Query 000482
Match_columns 1464
No_of_seqs 650 out of 4048
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 16:00:33 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000482.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_262-266//hhsearch_pdb/000482hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 1.0 1 1 1017.5 39.2 705 100-838 36-788 (800)
2 1z3i_X Similar to RAD54-like; 1.0 1 1 674.9 36.7 475 286-780 54-572 (644)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 604.4 37.5 455 280-779 31-496 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 461.2 26.8 420 286-756 152-633 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 389.2 30.1 421 286-755 8-492 (494)
6 2fwr_A DNA repair protein RAD2 1.0 1 1 358.3 18.5 377 284-754 90-470 (472)
7 1z5z_A Helicase of the SNF2/RA 1.0 1 1 352.5 20.3 252 517-780 12-268 (271)
8 4a2w_A RIG-I, retinoic acid in 1.0 1 1 347.4 27.3 434 285-774 246-782 (936)
9 4a2q_A RIG-I, retinoic acid in 1.0 1 1 341.1 29.8 435 284-774 245-782 (797)
10 4a2p_A RIG-I, retinoic acid in 1.0 1 1 327.1 31.0 429 286-774 6-541 (556)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=1017.48 Aligned_cols=705 Identities=41% Similarity=0.714 Sum_probs=587.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 8875544444443567569998322441---1256788776504887544444562457776311915899998676520
Q 000482 100 PLNDIDKILDCEMRPTVAGDSDVSKLGS---KQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM 176 (1464)
Q Consensus 100 ~~~didkiL~~r~rp~~~~~~~~~~~~~---k~~~~~EYLVKWkg~Sy~H~tWvpe~~L~~~~~~~~~lk~kl~~f~kk~ 176 (1464)
....||+||++|.+++..........-. ......||||||||+||+||||+|+++|.+. +++ .++.+|.++.
T Consensus 36 ~~~~ve~vl~~r~~~~~~~~~~~~~~~~~~~~~~~~~eylvKWkg~s~~hntWe~~e~L~~~----~~~-~~~~~~~k~~ 110 (800)
T 3mwy_W 36 DFHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQV----RGL-KRLDNYCKQF 110 (800)
T ss_dssp CCCBCSEEEEEECCCC--------CCSCCHHHHHHHCEEEEECSSSCTTSCEEECHHHHCSC----BTT-HHHHHHHHHH
T ss_pred CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEECCCCCHHHHHHC----CHH-HHHHHHHHHH
T ss_conf 88740212016546545677410136767678867627999968861110541387877434----157-9999999986
Q ss_pred CC--------CCCCHHH----------HCCCCCCCCCHHHHHHHCC-----CCCCCEEEEEEECCCCCCCCCCCCCCCC-
Q ss_conf 14--------9996022----------1018987631123522126-----8997138988712455643223345545-
Q 000482 177 SS--------NNNAEED----------FVAIRPEWTTVDRILACRG-----EDDEKEYLVKYKELSYDECYWEYESDIS- 232 (1464)
Q Consensus 177 ~~--------~~~~~ed----------~~~i~pe~~~veRII~~r~-----~~~~~eyLVKWkgL~Y~~~TWE~~~~~~- 232 (1464)
.. ...+.++ .....++|+.|||||+++. ..+..+|||||++|||++||||....+.
T Consensus 111 ~~~~~~~~~~~~~~~e~~e~~~~~~e~~~~~~~~~~~veRii~~~~~~~~~~~~~~~yLvKW~~L~y~~~tWe~~~~~~~ 190 (800)
T 3mwy_W 111 IIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVK 190 (800)
T ss_dssp THHHHHHTCSTTSCHHHHHHHHHHHHHHHHHHTTTTCEEEECCCCCEECTTSCEECBCCEEETTSCSTTCBCCBHHHHTT
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHH
T ss_conf 32778875189998788888756665420001113534689864113467898865999981578734264336344333
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 43689999998751136444675789996543357897222233479887889999688999999999854059727999
Q 000482 233 AFQPEIERFIKIQSRSHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILA 312 (1464)
Q Consensus 233 ~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~LrpyQlegvnwL~~~~~~~~~~ILA 312 (1464)
..+..++.|..+......... ........+.|..+..+|+++.+++|||||++|++||+..|.++.+||||
T Consensus 191 ~~~~~i~~~~~r~~~~~~~~~---------~~~~~~~~~~~~~~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILa 261 (800)
T 3mwy_W 191 LAPEQVKHFQNRENSKILPQY---------SSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILA 261 (800)
T ss_dssp TCHHHHHHHHHTTTCTTCSTT---------CCCCCSCCCCCCCCSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEEC
T ss_pred HHHHHHHHHHHHHHCCCCCCC---------HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 319999999976313447751---------01034557764002569986579975899999999999985138998998
Q ss_pred ECCCCCHHHHHHHHHHHHHH--CCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 05899508999999999871--8999599998432099999999988799909999858157889997521278991111
Q 000482 313 DEMGLGKTIQSIAFLASLFG--ERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKV 390 (1464)
Q Consensus 313 DemGLGKTiqaIa~l~~L~~--~~~~p~LIVvP~sll~qW~~El~k~~P~l~vv~y~G~~~~R~~i~~~e~~~~~~~~~~ 390 (1464)
|+||||||+|+|+++.+++. ...+|+|||||.+++.||.+||.+|+|++++++|+|....+..++.++++.......
T Consensus 262 demGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~- 340 (800)
T 3mwy_W 262 DEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKG- 340 (800)
T ss_dssp CCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----
T ss_pred ECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCC-
T ss_conf 2787532999999999999860779988999880389999999999779964999827777788988877622630013-
Q ss_pred HCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf 00136763223322345553999217888720012478740378704433248821399999981113537860366667
Q 000482 391 KKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQ 470 (1464)
Q Consensus 391 ~k~~~~~~~~~~~~~~~kfdViItSYe~l~~d~~~L~~i~w~~IIiDEAHrlKN~~Sk~~~~l~~l~~~~rLLLTGTPlq 470 (1464)
....+++|+||||+++..+...|..+.|++|||||||++||..+++++++..+.+.+||+|||||+|
T Consensus 341 -------------~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiq 407 (800)
T 3mwy_W 341 -------------KKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQ 407 (800)
T ss_dssp --------------CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCS
T ss_pred -------------CCCCCCCEEEECHHHHHHHHHHHHCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCC
T ss_conf -------------4456678899069999864999833773256413444414710199999997522438972278577
Q ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 99989999997422798899588999983232499999999862234677877667311898514510135899999999
Q 000482 471 NNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYY 550 (1464)
Q Consensus 471 Nnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~lL~p~llRR~K~dv~~~LPpk~e~iv~v~Ls~~Qk~~Y 550 (1464)
|++.|||++++||.|+.|.....|............+..|+.++.|+++||++.++...+|++.+.++.|+|++.|+.+|
T Consensus 408 N~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y 487 (800)
T 3mwy_W 408 NNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYY 487 (800)
T ss_dssp SCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHH
T ss_conf 99999999999858663674344232223146899999999997577753208766431688279999707999999999
Q ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHCCCCCCCCCCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999899998720-89602699999999997178653468899--------9435068999988310179999999999
Q 000482 551 KAILTRNYQILTRR-GGAQISLINVVMELRKLCCHPYMLEGVEP--------DIEDTNESFKQLLESSGKLQLLDKMMVK 621 (1464)
Q Consensus 551 ~~il~~~~~~l~~~-~~~~~~l~nil~~LRk~cnHP~L~~~~e~--------~~~~~~~~~~~li~~SgKl~~L~kLL~~ 621 (1464)
+.++.++...+... .+...+++++++.||++|+||+++...+. ...........++..|+|+.+|.++|..
T Consensus 488 ~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~ 567 (800)
T 3mwy_W 488 KNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTR 567 (800)
T ss_dssp HHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999999998610354544699999999987358654235578998861566555778888766427699999999999
Q ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 98608639999232125899999986269708999767799999999999833599960899623654445586678899
Q 000482 622 LKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 701 (1464)
Q Consensus 622 l~~~g~KVLIFSq~~~~LdiLe~~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~V 701 (1464)
+.+.|+||||||||+.++++|+++|...|+++.+|+|+++..+|+.+|++||++++..++||+||+|||+||||+.|++|
T Consensus 568 ~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~V 647 (800)
T 3mwy_W 568 LKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTV 647 (800)
T ss_dssp HTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEE
T ss_pred HHHCCCEEEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEE
T ss_conf 75279818999635999999999998679978999699999999999999608999825999745445678776016368
Q ss_pred EEECCCCCHHCHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC--------CCCCCHHHHH
Q ss_conf 99559999001798988331029998079999973899999999999998899999963200--------0689999999
Q 000482 702 IIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK--------AQNINQEELD 773 (1464)
Q Consensus 702 Ii~DsdWNP~~d~QA~gRahRiGQ~k~V~VyrLit~~TvEE~I~e~a~~K~~L~~~Vig~~~--------~~~~~~~el~ 773 (1464)
|+||++|||+.++||+||+||+||+++|.||+|++++|+||+|++++.+|+.|+++|++.+. ...++.+++.
T Consensus 648 I~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~ 727 (800)
T 3mwy_W 648 VIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELS 727 (800)
T ss_dssp EESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------------CCCCHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 99468788116899999988558986379999861998999999999998889999970375665321123478999999
Q ss_pred HHHHHCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC--CCHHHHHHHHHHHCCC
Q ss_conf 9998202322035676688854556898899998436887774457897--2024477673641100
Q 000482 774 DIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLDD--EDEDGFLKAFKVANFE 838 (1464)
Q Consensus 774 ~ll~~ga~~lf~~~~~~~~~~~~~~~~d~~id~ll~r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 838 (1464)
+||++|+..+|...+.. ..+.+.+||.||+|++...+..++.. ..+++|+++|++++|.
T Consensus 728 ~ll~~g~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (800)
T 3mwy_W 728 AILKFGAGNMFTATDNQ------KKLEDLNLDDVLNHAEDHVTTPDLGESHLGGEEFLKQFEVTDYK 788 (800)
T ss_dssp HHHSSCSSSSCCSHHHH------HHHHTCCHHHHHHHCEECCCSCCCCCCEESCHHHHHTTC-----
T ss_pred HHHHCCHHHHHHCCCCC------CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCEEEECC
T ss_conf 99971657651145764------32540579999874343244646556565568898612003023
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=674.88 Aligned_cols=475 Identities=33% Similarity=0.552 Sum_probs=399.6
Q ss_pred CCCCHHHHHHHHHHHHHH-----CCCCCEEEEECCCCCHHHHHHHHHHHHHHCC------CCCEEEEECCCCHHHHHHHH
Q ss_conf 999688999999999854-----0597279990589950899999999987189------99599998432099999999
Q 000482 286 GSLHPYQLEGLNFLRFSW-----SKQTHVILADEMGLGKTIQSIAFLASLFGER------ISPHLVVAPLSTLRNWEREF 354 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~-----~~~~~~ILADemGLGKTiqaIa~l~~L~~~~------~~p~LIVvP~sll~qW~~El 354 (1464)
..|+|||.+|++||...+ ..+.+|||||+||+|||+|+|+++..+.... .+++|||||.+++.||.+||
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E~ 133 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEV 133 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHH
T ss_conf 03519999999999984233544588875961078742999999999999974866567778579996589988799999
Q ss_pred HHHCCC-CEEEEEECCH-HHHH-HHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCCE
Q ss_conf 988799-9099998581-5788-999752127899111100136763223322345553999217888720012478740
Q 000482 355 ATWAPQ-MNVVMYVGTS-QARN-IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 431 (1464)
Q Consensus 355 ~k~~P~-l~vv~y~G~~-~~R~-~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdViItSYe~l~~d~~~L~~i~w 431 (1464)
.+|+|. +.++.+++.. ..+. .+..+ .... .....++|+|+||+++..+...+....|
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~------------------~~~~~~~vvi~ty~~l~~~~~~l~~~~~ 193 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNF--ISQQ------------------GMRIPTPILIISYETFRLHAEVLHKGKV 193 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHH--HCCC------------------SSCCSCCEEEEEHHHHHHHTTTTTTSCC
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHH--HHHC------------------CCCCCCCEEEEEHHHHHHHHHHHHCCCC
T ss_conf 9975887259998089889999999999--8733------------------7777875799638998765787504886
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH----------
Q ss_conf 3787044332488213999999811135378603666679998999999742279889958899998323----------
Q 000482 432 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---------- 501 (1464)
Q Consensus 432 ~~IIiDEAHrlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~---------- 501 (1464)
++||+||||++||..++.++++..+.+.+||+|||||+||++.|||++++|+.|+.|++...|...|...
T Consensus 194 ~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~ 273 (644)
T 1z3i_X 194 GLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADAS 273 (644)
T ss_dssp CEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCC
T ss_pred CEEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHCCCCCCC
T ss_conf 57998786224780459999998555673799846734588999999998618876899999998632615416776778
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHH
Q ss_conf -----24999999998622346778776673118985145101358999999999999989999872-089602699999
Q 000482 502 -----NQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTR-RGGAQISLINVV 575 (1464)
Q Consensus 502 -----~~~~~i~~L~~lL~p~llRR~K~dv~~~LPpk~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~-~~~~~~~l~nil 575 (1464)
.....+..|+.++.|+++||++.++...||++.+.+++|+|++.|+.+|+.++......... .+......+..+
T Consensus 274 ~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l 353 (644)
T 1z3i_X 274 DKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSI 353 (644)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 88999999999999999889998710876764279836999983799899999999999899999876276214599999
Q ss_pred HHHHHHHCCCCCCCCC----CCCCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHH
Q ss_conf 9999971786534688----99943506-------8999988310179999999999986-0863999923212589999
Q 000482 576 MELRKLCCHPYMLEGV----EPDIEDTN-------ESFKQLLESSGKLQLLDKMMVKLKE-QGHRVLIYSQFQHMLDLLE 643 (1464)
Q Consensus 576 ~~LRk~cnHP~L~~~~----e~~~~~~~-------~~~~~li~~SgKl~~L~kLL~~l~~-~g~KVLIFSq~~~~LdiLe 643 (1464)
+.||++|+||+++... +....... .........|+|+..|..++..+.. .++|+||||+++.++++|+
T Consensus 354 ~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~ 433 (644)
T 1z3i_X 354 TSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFE 433 (644)
T ss_dssp HHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
T ss_conf 99999957999888887415400355776454211100057011748999999999986469987999980599999999
Q ss_pred HHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHCHHHHHHHHHHC
Q ss_conf 99862697089997677999999999998335999608996236544455866788999955999900179898833102
Q 000482 644 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 723 (1464)
Q Consensus 644 ~~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QA~gRahRi 723 (1464)
.+|...|+.+.+++|+++..+|+.++++|+++.+..++||+||++||+||||+.|++||+||++|||..+.||+||+||+
T Consensus 434 ~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~ 513 (644)
T 1z3i_X 434 KLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 513 (644)
T ss_dssp HHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSST
T ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99997799789983999999999999996399999679998445566784652389899979999813799998840322
Q ss_pred CCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCHHHHHHHHHHCH
Q ss_conf 999807999997389999999999999889999996320--006899999999998202
Q 000482 724 GQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRL--KAQNINQEELDDIIRYGS 780 (1464)
Q Consensus 724 GQ~k~V~VyrLit~~TvEE~I~e~a~~K~~L~~~Vig~~--~~~~~~~~el~~ll~~ga 780 (1464)
||+++|.||+|++.+|+||+|++++..|..|...|++.. ....++.+++.+++.++.
T Consensus 514 Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~Lf~~~~ 572 (644)
T 1z3i_X 514 GQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSLNE 572 (644)
T ss_dssp TCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHHHTCCCS
T ss_pred CCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHCCCC
T ss_conf 89872699998879889999999999999999998568605433789999999867898
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=604.43 Aligned_cols=455 Identities=31% Similarity=0.584 Sum_probs=397.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHHHC
Q ss_conf 8878899996889999999998540597279990589950899999999987189-995999984320999999999887
Q 000482 280 PEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWA 358 (1464)
Q Consensus 280 P~~l~~~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~-~~p~LIVvP~sll~qW~~El~k~~ 358 (1464)
|..+. ..|+|||.+|++|+...+..+.++||||+||+|||+++++++..+...+ .+++|||||.+++.||.+||.+|+
T Consensus 31 p~~~~-~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 31 PYNIK-ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKFA 109 (500)
T ss_dssp CCSCS-SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHHHHHHHHHHC
T ss_pred CHHHH-CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHC
T ss_conf 83320-03369999999999997417998899808997389999999998875589997899903899999999999977
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf 99909999858157889997521278991111001367632233223455539992178887200124787403787044
Q 000482 359 PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDE 438 (1464)
Q Consensus 359 P~l~vv~y~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdViItSYe~l~~d~~~L~~i~w~~IIiDE 438 (1464)
|.+++.+++|.... .....++|+|+||+++..+.. +....|++||+||
T Consensus 110 ~~~~v~~~~g~~~~-------------------------------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDE 157 (500)
T 1z63_A 110 PHLRFAVFHEDRSK-------------------------------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDE 157 (500)
T ss_dssp TTSCEEECSSSTTS-------------------------------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEET
T ss_pred CCCEEEEEECCCHH-------------------------------CCCCCCCEEEEEHHHHHCCCH-HCCCCCCEEEEEC
T ss_conf 99559997267021-------------------------------003577689963799726302-1178728799808
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHH
Q ss_conf 332488213999999811135378603666679998999999742279889958899998323---24999999998622
Q 000482 439 GHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---NQEEQISRLHRMLA 515 (1464)
Q Consensus 439 AHrlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~---~~~~~i~~L~~lL~ 515 (1464)
||+++|..++.++++..+.+.++|+|||||++|++.|||++++|+.|+.|++...|...|... ........|+.++.
T Consensus 158 aH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~ 237 (500)
T 1z63_A 158 AQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIIS 237 (500)
T ss_dssp GGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 41017876899999996004718997467777999999999998587757998999998525111466889999999976
Q ss_pred HHHHHHHHHH--HHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 3467787766--73118985145101358999999999999989999872089--6026999999999971786534688
Q 000482 516 PHLLRRVKKD--VMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGG--AQISLINVVMELRKLCCHPYMLEGV 591 (1464)
Q Consensus 516 p~llRR~K~d--v~~~LPpk~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~--~~~~l~nil~~LRk~cnHP~L~~~~ 591 (1464)
++++||++.+ +...+|++.+..+.++|++.|+..|+.+.......+....+ ....++..++.||++|+||.++...
T Consensus 238 ~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~ 317 (500)
T 1z63_A 238 PFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGG 317 (500)
T ss_dssp TTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCS
T ss_pred HHEEEECCCCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHCCC
T ss_conf 67455025542411229997589998189999999999999999999986423210679999999999881799884385
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHH
Q ss_conf 9994350689999883101799999999999860863999923212589999998626-970899976779999999999
Q 000482 592 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRID 670 (1464)
Q Consensus 592 e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiLe~~L~~~-g~~~~ridGs~~~~eRq~~Id 670 (1464)
+. ....++|+..+.+++..+...++|+||||++..+++.|..+|... |+.+.+++|+++..+|+.+++
T Consensus 318 ~~-----------~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~ 386 (500)
T 1z63_A 318 EQ-----------SVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIIS 386 (500)
T ss_dssp CC-----------CSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHH
T ss_pred CC-----------HHHCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
T ss_conf 20-----------1111552999999999987268868999721889999999998853887699979999999999999
Q ss_pred HHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHCHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 98335999608996236544455866788999955999900179898833102999807999997389999999999999
Q 000482 671 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 750 (1464)
Q Consensus 671 ~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QA~gRahRiGQ~k~V~VyrLit~~TvEE~I~e~a~~ 750 (1464)
.|++++... ++|++|+++|+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++++|+||+|++++..
T Consensus 387 ~F~~~~~~~-vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~ 465 (500)
T 1z63_A 387 KFQNNPSVK-FIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAF 465 (500)
T ss_dssp HHHHCTTCC-CCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTT
T ss_pred HHCCCCCCC-EEEEECCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHH
T ss_conf 960899987-7999533355777445588899958998954589999988873898706999977489899999999999
Q ss_pred HHHHHHHHHCCC--CCCCCCHHHHHHHHHHC
Q ss_conf 889999996320--00689999999999820
Q 000482 751 KMVLEHLVVGRL--KAQNINQEELDDIIRYG 779 (1464)
Q Consensus 751 K~~L~~~Vig~~--~~~~~~~~el~~ll~~g 779 (1464)
|..+...+++.. ....++.+++.+++.+.
T Consensus 466 K~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~ 496 (500)
T 1z63_A 466 KRSLFKDIISSGDSWITELSTEELRKVIELS 496 (500)
T ss_dssp CSSSSSSGGGSTTGGGGSSCHHHHHHHHSCC
T ss_pred HHHHHHHHHHCCCCHHCCCCHHHHHHHHCCC
T ss_conf 9999999860685021159999999996468
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=461.22 Aligned_cols=420 Identities=20% Similarity=0.264 Sum_probs=323.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 9996889999999998540597279990589950899999999987189-995999984320999999999887999099
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNVV 364 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~-~~p~LIVvP~sll~qW~~El~k~~P~l~vv 364 (1464)
.+|+|||.++++|+.. ..+.++||||+||+|||+++++++..+...+ .+++|||||.+++.||..||.+|+ ++++.
T Consensus 152 ~~LrpyQ~eav~~~l~--~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~v~ 228 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGR--RHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRF-NLRFA 228 (968)
T ss_dssp SCCCHHHHHHHHHHHH--SSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHHHHHHHHHHS-CCCCE
T ss_pred CCCCHHHHHHHHHHHH--HCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHH-CCCEE
T ss_conf 9970999999999997--05898898789997599999999999998189982999957888999999999986-99879
Q ss_pred EEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHC---CCCCCCEEEEEECCCCC
Q ss_conf 998581578899975212789911110013676322332234555399921788872001---24787403787044332
Q 000482 365 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKWQCMIVDEGHR 441 (1464)
Q Consensus 365 ~y~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdViItSYe~l~~d~~---~L~~i~w~~IIiDEAHr 441 (1464)
+++|.......... ......++|+|+||+++..+.. .+....|++|||||||+
T Consensus 229 v~~~~~~~~~~~~~------------------------~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~ 284 (968)
T 3dmq_A 229 LFDDERYAEAQHDA------------------------YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHH 284 (968)
T ss_dssp ECCHHHHHHHHHTT------------------------CSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSC
T ss_pred EECCCHHHHHHHHC------------------------CCCCCCCCEEEECHHHHHHCHHHHHHHHHCCCCEEEEHHHHH
T ss_conf 98062055543200------------------------364456898997689986487888876415877897444676
Q ss_pred CCCCCHH---HHHHHHHC--CCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH----------
Q ss_conf 4882139---99999811--13537860366667999899999974227988995889999832324999----------
Q 000482 442 LKNKDSK---LFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ---------- 506 (1464)
Q Consensus 442 lKN~~Sk---~~~~l~~l--~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~---------- 506 (1464)
++|..+. .++.+..+ .+.++|+|||||++|++.|+|++++|+.|..|++...|...+........
T Consensus 285 ~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~ 364 (968)
T 3dmq_A 285 LVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNK 364 (968)
T ss_dssp CCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCC
T ss_pred HCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 25888754299999999862578589997687669879999999825930118989999999857889999998742678
Q ss_pred ------------------------------------HHHHHHHH-----HHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
Q ss_conf ------------------------------------99999862-----2346778776673118985145101358999
Q 000482 507 ------------------------------------ISRLHRML-----APHLLRRVKKDVMKELPPKKELILRVELSSK 545 (1464)
Q Consensus 507 ------------------------------------i~~L~~lL-----~p~llRR~K~dv~~~LPpk~e~iv~v~Ls~~ 545 (1464)
...+..++ ...++|+++..+ ..+|++....+.+.+++.
T Consensus 365 ~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l~~~~~ 443 (968)
T 3dmq_A 365 LSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKLPLPTQ 443 (968)
T ss_dssp CCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEECCCHH
T ss_pred CCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-CCCCHHHEEEEECCCCHH
T ss_conf 9988999999884203367887503622233379999999999986173326563226554-556711157523689999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999989999872089602699999999997178653-4688999435068999988310179999999999986
Q 000482 546 QKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM-LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKE 624 (1464)
Q Consensus 546 Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~cnHP~L-~~~~e~~~~~~~~~~~~li~~SgKl~~L~kLL~~l~~ 624 (1464)
....|..... ..+...... ....+ .+|.. +....... ......+.|+..|.+++.. .
T Consensus 444 ~~~~~~~~~~-----~~~~~~~~~-------~~~~~-l~pe~~~~~l~~~~-------~~~~~~~~K~~~L~~ll~~--~ 501 (968)
T 3dmq_A 444 YQTAIKVSGI-----MGARKSAED-------RARDM-LYPERIYQEFEGDN-------ATWWNFDPRVEWLMGYLTS--H 501 (968)
T ss_dssp HHHHHHHHHH-----TTCCSSGGG-------GTHHH-HCSGGGTTTTTSSS-------CCTTTTSHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHH-----HHHHHHHHH-------HHHHH-CCHHHHHHHHHHHH-------HCCCCCCHHHHHHHHHHHH--C
T ss_conf 9999998754-----302126677-------77641-08598998764333-------1356856799999999983--7
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf 086399992321258999999862-6970899976779999999999983359996089962365444558667889999
Q 000482 625 QGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 703 (1464)
Q Consensus 625 ~g~KVLIFSq~~~~LdiLe~~L~~-~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi 703 (1464)
.+.|+||||++..+++.|...|.. .|+++..++|+++..+|+.+++.|+++.+ .+.+|++|+++++|||++.+++||+
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~-~~~vLvaT~v~~~GlDl~~~~~VI~ 580 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDT-GAQVLLCSEIGSEGRNFQFASHMVM 580 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTS-SCEEEECSCCTTCSSCCTTCCEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCC-CCCEEEECCHHHCCCCCCCCCEEEE
T ss_conf 999789996959999999999998749838998499999999999999747997-6308985334316888556767999
Q ss_pred ECCCCCHHCHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 55999900179898833102999807999997389999999999999889999
Q 000482 704 YDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEH 756 (1464)
Q Consensus 704 ~DsdWNP~~d~QA~gRahRiGQ~k~V~VyrLit~~TvEE~I~e~a~~K~~L~~ 756 (1464)
||++|||..+.|++||++|+||++.|.||++++.+|+|++|++...+|+.+..
T Consensus 581 ~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~ 633 (968)
T 3dmq_A 581 FDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFE 633 (968)
T ss_dssp SSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSS
T ss_pred ECCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEE
T ss_conf 56999878999870114307998508999805777199999999986787635
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=389.17 Aligned_cols=421 Identities=14% Similarity=0.173 Sum_probs=298.2
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC-CCHHHHHHHHHHHC--CCCE
Q ss_conf 99968899999999985405972799905899508999999999871899959999843-20999999999887--9990
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQMN 362 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~El~k~~--P~l~ 362 (1464)
.+|+|||.+++.|+ ..+ ++||+++||+|||++++.++..+......++|||||. +++.||.++|.+|+ |...
T Consensus 8 ~~l~~~Q~~~i~~~----~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 82 (494)
T 1wp9_A 8 IQPRIYQEVIYAKC----KET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (494)
T ss_dssp HCCCHHHHHHHHHG----GGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CCCCHHHHHHHHHH----HHC-CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHCCCHHH
T ss_conf 78639999999999----619-9899918998789999999999986479859999788899999999999874756111
Q ss_pred EEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHC--CCCCCCEEEEEECCCC
Q ss_conf 99998581578899975212789911110013676322332234555399921788872001--2478740378704433
Q 000482 363 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDEGH 440 (1464)
Q Consensus 363 vv~y~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdViItSYe~l~~d~~--~L~~i~w~~IIiDEAH 440 (1464)
+..++|.......... ...++|+|+||+.+..... .+....|++||+||||
T Consensus 83 v~~~~g~~~~~~~~~~---------------------------~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 135 (494)
T 1wp9_A 83 IVALTGEKSPEERSKA---------------------------WARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAH 135 (494)
T ss_dssp EEEECSCSCHHHHHHH---------------------------HHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGG
T ss_pred EEEEECCCCHHHHHHH---------------------------CCCCCEEEECHHHHHHHHHCCCCCHHHCEEEEEECCC
T ss_conf 6876077533556653---------------------------3579899963999999986087156541089997875
Q ss_pred CCCCCCHHH--HHHHHH-CCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCC---CHHHHHHHH-H-------HHHHHHH
Q ss_conf 248821399--999981-1135378603666679998999999742279889---958899998-3-------2324999
Q 000482 441 RLKNKDSKL--FSSLKQ-YSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFG---SLEEFQEEF-K-------DINQEEQ 506 (1464)
Q Consensus 441 rlKN~~Sk~--~~~l~~-l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~---~~~~F~~~f-~-------~~~~~~~ 506 (1464)
++++..+.. ...+.. ....++++|||||. ++..+++.++.++...... ....+...+ . .......
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (494)
T 1wp9_A 136 RAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEI 214 (494)
T ss_dssp GCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHH
T ss_pred CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHHEEECCCCCCHHHHHHCCCCCEEEEECCCCHH
T ss_conf 66888819999999973288776999956998-88578999998507000502678758788752787426895688588
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-----------------------
Q ss_conf 999998622346778776673118985145101358999999999999989999872-----------------------
Q 000482 507 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTR----------------------- 563 (1464)
Q Consensus 507 i~~L~~lL~p~llRR~K~dv~~~LPpk~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~----------------------- 563 (1464)
...+...+.+++.++.+......+..... ..++........ ......+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (494)
T 1wp9_A 215 YKEVRKLLREMLRDALKPLAETGLLESSS----PDIPKKEVLRAG---QIINEEMAKGNHDLRGLLLYHAMALKLHHAIE 287 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCC----TTSCHHHHHHHH---HHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCCHHHHHHHH---HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999989899999999999735565457----773355789999---99998753356311347999988888999999
Q ss_pred --CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH----------HHHHHHHHHHHHHHHHHHH--HCCCEE
Q ss_conf --08960269999999999717865346889994350689999----------8831017999999999998--608639
Q 000482 564 --RGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQ----------LLESSGKLQLLDKMMVKLK--EQGHRV 629 (1464)
Q Consensus 564 --~~~~~~~l~nil~~LRk~cnHP~L~~~~e~~~~~~~~~~~~----------li~~SgKl~~L~kLL~~l~--~~g~KV 629 (1464)
.......+...+..+...+.|+...... . ......+.. ....++|+..|.++|.... ..++|+
T Consensus 288 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~ 364 (494)
T 1wp9_A 288 LLETQGLSALRAYIKKLYEEAKAGSTKASK--E-IFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKI 364 (494)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTCCHHHH--H-HHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCE
T ss_pred HHHHHCHHHHHHHHHHHHHHHCCCCCHHHH--H-HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 998525799999999998752232114556--6-6650788989999998874589986999999999998436899759
Q ss_pred EEEECCHHHHHHHHHHHHHCCCEEEEEEC--------CCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 99923212589999998626970899976--------7799999999999833599960899623654445586678899
Q 000482 630 LIYSQFQHMLDLLEDYLTFKKWQYERIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 701 (1464)
Q Consensus 630 LIFSq~~~~LdiLe~~L~~~g~~~~ridG--------s~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~V 701 (1464)
||||++..+++.|.++|...|+.+.+++| +++..+|+.+++.|+++.. .+|++|.++++||||+.+++|
T Consensus 365 lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~---~vLv~T~~~~~Gldl~~~~~V 441 (494)
T 1wp9_A 365 IVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEF---NVLVATSVGEEGLDVPEVDLV 441 (494)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSC---SEEEECGGGGGGGGSTTCCEE
T ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCC---EEEEECCCCCCCCCCHHCCEE
T ss_conf 99976689999999999975998079965665444445899999999999866994---699988841258871437989
Q ss_pred EEECCCCCHHCHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 995599990017989883310299980799999738999999999999988999
Q 000482 702 IIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLE 755 (1464)
Q Consensus 702 Ii~DsdWNP~~d~QA~gRahRiGQ~k~V~VyrLit~~TvEE~I~e~a~~K~~L~ 755 (1464)
|+||++|||..+.|++||++|.|| +.+|+|++.+|+||+++.++.+|..+.
T Consensus 442 i~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~ 492 (494)
T 1wp9_A 442 VFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIM 492 (494)
T ss_dssp EESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC------
T ss_pred EEECCCCCHHHHHHHHHHCCCCCC---CEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 992898878999998752257788---469999956987899999888789873
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=358.31 Aligned_cols=377 Identities=16% Similarity=0.217 Sum_probs=278.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC-CCHHHHHHHHHHHCCCCE
Q ss_conf 8999968899999999985405972799905899508999999999871899959999843-209999999998879990
Q 000482 284 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMN 362 (1464)
Q Consensus 284 ~~~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~El~k~~P~l~ 362 (1464)
.+.+|+|||.++++++ ..+.++||+++||+|||++++.++..+ ..++|||||. +++.||.++|.+| +..
T Consensus 90 ~~~~l~~~Q~~ai~~i----~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~~--~~~ 159 (472)
T 2fwr_A 90 AEISLRDYQEKALERW----LVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGIF--GEE 159 (472)
T ss_dssp CCCCBCHHHHHHHHHH----TTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGGG--CGG
T ss_pred CCCCCCHHHHHHHHHH----HHCCCEEEEECCCCCHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHHHHHHC--CCC
T ss_conf 8998688999999999----965987999699998899999999980----999999987999999999999967--996
Q ss_pred -EEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf -9999858157889997521278991111001367632233223455539992178887200124787403787044332
Q 000482 363 -VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHR 441 (1464)
Q Consensus 363 -vv~y~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdViItSYe~l~~d~~~L~~i~w~~IIiDEAHr 441 (1464)
+.+++|... ...+|+|+||+.+......+. -.|++||+||||+
T Consensus 160 ~v~~~~g~~~-----------------------------------~~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~ 203 (472)
T 2fwr_A 160 YVGEFSGRIK-----------------------------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHH 203 (472)
T ss_dssp GEEEBSSSCB-----------------------------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGG
T ss_pred CEEEECCCCC-----------------------------------CCCCEEEEECHHHHHHHHHHC-CCCCEEEEECCCC
T ss_conf 3699878767-----------------------------------767789997689997799736-8777899989757
Q ss_pred CCCCCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 48821399999981113537860366667999899999974227988995889999832324999999998622346778
Q 000482 442 LKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRR 521 (1464)
Q Consensus 442 lKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~lL~p~llRR 521 (1464)
+.+.... ..+..+...++++|||||.+++..+ ..+...+.+.+.++
T Consensus 204 ~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~--------------------------------~~l~~~~~~~~~~~ 249 (472)
T 2fwr_A 204 LPAESYV--QIAQMSIAPFRLGLTATFEREDGRH--------------------------------EILKEVVGGKVFEL 249 (472)
T ss_dssp TTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGG--------------------------------GSHHHHTCCEEEEC
T ss_pred CCCHHHH--HHHHHCCCCEEEEEECCCCCCCCHH--------------------------------HHHHHHHCCEEEEC
T ss_conf 8976899--9997357781899932766889778--------------------------------99999729857654
Q ss_pred HHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf 7766731-189851451013589999999999999899998720896026999999999971786534688999435068
Q 000482 522 VKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNE 600 (1464)
Q Consensus 522 ~K~dv~~-~LPpk~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~cnHP~L~~~~e~~~~~~~~ 600 (1464)
...++.. .+++.....+.+++++.+...|..+.......+............ +..+-.++. ..............
T Consensus 250 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~ 325 (472)
T 2fwr_A 250 FPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAED-FNKIVMASG---YDERAYEALRAWEE 325 (472)
T ss_dssp CHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSS-STTTTTTTC---CSSSSSTTTHHHHH
T ss_pred CHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH-HHHHHHHHC---CCHHHHHHHHHHHH
T ss_conf 78987067678818999985899899999999999999999864754224466-899998723---69889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCE
Q ss_conf 99998831017999999999998608639999232125899999986269708999767799999999999833599960
Q 000482 601 SFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRF 680 (1464)
Q Consensus 601 ~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiLe~~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~ 680 (1464)
........+.|+..|.+++.. ..++++||||++..+++.|...|. +..++|.++..+|+.+++.|+++...
T Consensus 326 ~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~-- 396 (472)
T 2fwr_A 326 ARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFR-- 396 (472)
T ss_dssp HHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCS--
T ss_pred HHHHHHCCHHHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHC-----CCEEECCCCHHHHHHHHHHHHCCCCC--
T ss_conf 999763373899999999985--789838999797999999999748-----65562899999999999998679988--
Q ss_pred EEEEECCCCCCCCCCCCCCEEEEECCCCCHHCHHHHHHHHHHCCCC-CCEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 8996236544455866788999955999900179898833102999-8079999973899999999999998899
Q 000482 681 CFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT-NKVMIFRLITRGSIEERMMQMTKKKMVL 754 (1464)
Q Consensus 681 vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QA~gRahRiGQ~-k~V~VyrLit~~TvEE~I~e~a~~K~~L 754 (1464)
+|++|+++++|||++.+++||++|++|||..+.|+.||++|.||. +.|.||+|++++|+|+++.++..+|..+
T Consensus 397 -vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~ 470 (472)
T 2fwr_A 397 -AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKG 470 (472)
T ss_dssp -BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC--------------
T ss_pred -EEEECCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf -89985705148462028689998999988899998763157779985399999981998537999999876505
No 7
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=352.54 Aligned_cols=252 Identities=27% Similarity=0.443 Sum_probs=224.0
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 46778776673118985145101358999999999999989999872089--6026999999999971786534688999
Q 000482 517 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGG--AQISLINVVMELRKLCCHPYMLEGVEPD 594 (1464)
Q Consensus 517 ~llRR~K~dv~~~LPpk~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~--~~~~l~nil~~LRk~cnHP~L~~~~e~~ 594 (1464)
--+||+|++|..+|||+.+.+++|+||+.|+.+|+.++.+....+....+ ....+++.++.||++|+||+++....
T Consensus 12 ~~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~-- 89 (271)
T 1z5z_A 12 SGLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE-- 89 (271)
T ss_dssp ----------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSC--
T ss_pred CCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCC--
T ss_conf 564164877875199977999981899999999999999999999740352128899999999999848998846873--
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 4350689999883101799999999999860863999923212589999998626-970899976779999999999983
Q 000482 595 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFN 673 (1464)
Q Consensus 595 ~~~~~~~~~~li~~SgKl~~L~kLL~~l~~~g~KVLIFSq~~~~LdiLe~~L~~~-g~~~~ridGs~~~~eRq~~Id~Fn 673 (1464)
.+...|+|+..|.++|..+.+.++|+||||+++.++++|+.+|... |+++.+++|+++..+|+.+++.|+
T Consensus 90 ---------~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~ 160 (271)
T 1z5z_A 90 ---------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQ 160 (271)
T ss_dssp ---------CCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHH
T ss_pred ---------CCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHC
T ss_conf ---------22346899999999999998679969999551999999999998733984799979999999999999832
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHCHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 35999608996236544455866788999955999900179898833102999807999997389999999999999889
Q 000482 674 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMV 753 (1464)
Q Consensus 674 ~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QA~gRahRiGQ~k~V~VyrLit~~TvEE~I~e~a~~K~~ 753 (1464)
++.... +||+||++||+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++.+|+||+|++++..|..
T Consensus 161 ~~~~~~-v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~ 239 (271)
T 1z5z_A 161 NNPSVK-FIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRS 239 (271)
T ss_dssp HCTTCC-EEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHH
T ss_pred CCCCCC-EEEEEHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 899997-8997223515886764489999979999851899999852323899856999985498899999999999999
Q ss_pred HHHHHHCCCC--CCCCCHHHHHHHHHHCH
Q ss_conf 9999963200--06899999999998202
Q 000482 754 LEHLVVGRLK--AQNINQEELDDIIRYGS 780 (1464)
Q Consensus 754 L~~~Vig~~~--~~~~~~~el~~ll~~ga 780 (1464)
+...+++... ...++.+++.+++.++.
T Consensus 240 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 268 (271)
T 1z5z_A 240 LFKDIISSGDSWITELSTEELRKVIELSV 268 (271)
T ss_dssp HHTTGGGGTTHHHHTSCHHHHHHHHSCCC
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHCCCC
T ss_conf 99999716705432389999999965588
No 8
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=347.37 Aligned_cols=434 Identities=14% Similarity=0.171 Sum_probs=263.8
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC----CCCEEEEECC-CCHHHHHHHHHHHCC
Q ss_conf 99996889999999998540597279990589950899999999987189----9959999843-209999999998879
Q 000482 285 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWAP 359 (1464)
Q Consensus 285 ~~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~----~~p~LIVvP~-sll~qW~~El~k~~P 359 (1464)
..+|+|||.+++.++ ..+.++|++++||+|||++++..+..+.... .+++|||+|. +++.||.++|.+|++
T Consensus 246 ~~~~r~~Q~~ai~~i----l~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH----HCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 898779999999999----8099899996998459999999999999736556898599996989999999999999712
Q ss_pred --CCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHCC--C-CCCCEEEE
Q ss_conf --990999985815788999752127899111100136763223322345553999217888720012--4-78740378
Q 000482 360 --QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--L-KPIKWQCM 434 (1464)
Q Consensus 360 --~l~vv~y~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdViItSYe~l~~d~~~--L-~~i~w~~I 434 (1464)
++.+..++|....+..... ....++|+|+||+.+...... + ....|++|
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~--------------------------~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~li 375 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEK--------------------------VIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375 (936)
T ss_dssp TTTCCEEEECCC-----CCHH--------------------------HHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEE
T ss_pred CCCCEEEEEECCCCHHHHHHH--------------------------HCCCCCEEEECHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 169559999799631257897--------------------------416999999449999999871764533678799
Q ss_pred EECCCCCCCCCCHHHHHHHHHC-C--------CCCEEEECCCCCCCCHHHHHH-------HHHHHCCCCC----CCHHHH
Q ss_conf 7044332488213999999811-1--------353786036666799989999-------9974227988----995889
Q 000482 435 IVDEGHRLKNKDSKLFSSLKQY-S--------TRHRVLLTGTPLQNNLDELFM-------LMHFLDAGKF----GSLEEF 494 (1464)
Q Consensus 435 IiDEAHrlKN~~Sk~~~~l~~l-~--------~~~rLLLTGTPlqNnl~EL~s-------LL~fL~p~~f----~~~~~F 494 (1464)
|+||||++.+..+ ....+..+ . ...+++|||||.+++..++.. +...|....+ .....+
T Consensus 376 ViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l 454 (936)
T 4a2w_A 376 IFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQEL 454 (936)
T ss_dssp EEETGGGCSTTCH-HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred EEECCCCCCCCCC-HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHH
T ss_conf 9987313599866-999999999986313788673998638855454020899999999999854971553465448999
Q ss_pred HHHHHHHH-------------H----HHHHHHHHHHHHHH----------------------HHHHHHHHHHHCCCCCEE
Q ss_conf 99983232-------------4----99999999862234----------------------677877667311898514
Q 000482 495 QEEFKDIN-------------Q----EEQISRLHRMLAPH----------------------LLRRVKKDVMKELPPKKE 535 (1464)
Q Consensus 495 ~~~f~~~~-------------~----~~~i~~L~~lL~p~----------------------llRR~K~dv~~~LPpk~e 535 (1464)
...+.... . ...+..++.++..+ +....+......+|..
T Consensus 455 ~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~-- 532 (936)
T 4a2w_A 455 QRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDK-- 532 (936)
T ss_dssp HHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCH--
T ss_pred HHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC--
T ss_conf 875367762377336556757999999999999999998876655532022332257799999999998877405532--
Q ss_pred EEECCCCCHHHHHHHHHHHHH------HHHHH--HHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH----HH
Q ss_conf 510135899999999999998------99998--7208960269999999999717865346889994350689----99
Q 000482 536 LILRVELSSKQKEYYKAILTR------NYQIL--TRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNES----FK 603 (1464)
Q Consensus 536 ~iv~v~Ls~~Qk~~Y~~il~~------~~~~l--~~~~~~~~~l~nil~~LRk~cnHP~L~~~~e~~~~~~~~~----~~ 603 (1464)
..+...+..+... ....+ ....+ .......+...+....- .+..+........ ..
T Consensus 533 --------~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~----~~~~~~~l~~~~~~~~~-~~~~~~e~~l~~~~~~~~~ 599 (936)
T 4a2w_A 533 --------EEESRICRALFICTEHLRKYNDALIISEDAR----IIDALSYLTEFFTNVKN-GPYTELEQHLTAKFQEKEP 599 (936)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----HHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
T ss_conf --------1035799999999999999888875002042----88899999999998763-2588789999998999999
Q ss_pred HH-------HHHHHHHHHHHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHHC------------CCEEEEEECCCCH
Q ss_conf 98-------831017999999999998--60863999923212589999998626------------9708999767799
Q 000482 604 QL-------LESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFK------------KWQYERIDGKVGG 662 (1464)
Q Consensus 604 ~l-------i~~SgKl~~L~kLL~~l~--~~g~KVLIFSq~~~~LdiLe~~L~~~------------g~~~~ridGs~~~ 662 (1464)
.+ ...++|+..|.++|.... ..++|+||||+++.+++.|.++|... |..+..++|+++.
T Consensus 600 ~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~ 679 (936)
T 4a2w_A 600 ELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTL 679 (936)
T ss_dssp HHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC--------------
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCH
T ss_conf 99976405677897999999999998535899749999697999999999986373536666169965787656788899
Q ss_pred HHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHCHHHHHHHHHHCCCCCCEEEEEEEECCCHH
Q ss_conf 999999999833-5999608996236544455866788999955999900179898833102999807999997389999
Q 000482 663 AERQIRIDRFNA-KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIE 741 (1464)
Q Consensus 663 ~eRq~~Id~Fn~-~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QA~gRahRiGQ~k~V~VyrLit~~TvE 741 (1464)
.+|+.+++.|++ +.. .+|++|+++++|||++.+++||+||++|||..++|++|| |+.+++.+|.|++.+|++
T Consensus 680 ~eR~~il~~Fr~~g~~---~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 680 PSQKGVLDAFKTSKDN---RLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVV 752 (936)
T ss_dssp --------------CC---SEEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHH
T ss_pred HHHHHHHHHHHCCCCE---EEEEEECCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHH
T ss_conf 9999999986315981---599980726427760558989993899988999996487----788887799998698899
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 999999999889999996320006899999999
Q 000482 742 ERMMQMTKKKMVLEHLVVGRLKAQNINQEELDD 774 (1464)
Q Consensus 742 E~I~e~a~~K~~L~~~Vig~~~~~~~~~~el~~ 774 (1464)
++.. ....|..+...++..+. .++.+++..
T Consensus 753 e~~~-~~~~ke~~~~~~i~~l~--~~~~~~~~~ 782 (936)
T 4a2w_A 753 ENEK-CNRYKEEMMNKAVEKIQ--KWDEETFAK 782 (936)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHH--TSCHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHH--CCCHHHHHH
T ss_conf 9999-98899999999999864--479999999
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=341.06 Aligned_cols=435 Identities=14% Similarity=0.154 Sum_probs=265.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC----CCCEEEEECC-CCHHHHHHHHHHHC
Q ss_conf 899996889999999998540597279990589950899999999987189----9959999843-20999999999887
Q 000482 284 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWA 358 (1464)
Q Consensus 284 ~~~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~----~~p~LIVvP~-sll~qW~~El~k~~ 358 (1464)
...+|+|||.+++.++ ..+.++|++++||+|||++++..+..+.... .+++|||||. +++.||.++|.+|+
T Consensus 245 g~~~l~~~Q~~~i~~~----l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 245 ETKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ---CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH----HHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 8899999999999999----809998999699972999999999999984665679969999698999999999999861
Q ss_pred C--CCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHC--CC-CCCCEEE
Q ss_conf 9--99099998581578899975212789911110013676322332234555399921788872001--24-7874037
Q 000482 359 P--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SL-KPIKWQC 433 (1464)
Q Consensus 359 P--~l~vv~y~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdViItSYe~l~~d~~--~L-~~i~w~~ 433 (1464)
+ ++.+..++|........... ....+|+|+|++.+..... .+ ....|++
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~--------------------------~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~ 374 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKV--------------------------IEDSDIIVVTPQILVNSFEDGTLTSLSIFTL 374 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHH--------------------------HHTCSEEEECHHHHHHHHHSSSCCCGGGCSE
T ss_pred CCCCCEEEEEECCCCHHHHHHHH--------------------------HCCCCEEEECHHHHHHHHHHCCCCCCCCCCE
T ss_conf 43794699996996232469974--------------------------0799999976699999998265465133778
Q ss_pred EEECCCCCCCCCCHHHHHHHHHC-C--------CCCEEEECCCCCCCCH----------HHHHHHHHHHCCC-CCCCHHH
Q ss_conf 87044332488213999999811-1--------3537860366667999----------8999999742279-8899588
Q 000482 434 MIVDEGHRLKNKDSKLFSSLKQY-S--------TRHRVLLTGTPLQNNL----------DELFMLMHFLDAG-KFGSLEE 493 (1464)
Q Consensus 434 IIiDEAHrlKN~~Sk~~~~l~~l-~--------~~~rLLLTGTPlqNnl----------~EL~sLL~fL~p~-~f~~~~~ 493 (1464)
||+||||++.+..+ ....+..+ . ...+++|||||.+++. .+|+..++.-... .......
T Consensus 375 iViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~ 453 (797)
T 4a2q_A 375 MIFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQE 453 (797)
T ss_dssp EEETTGGGCSTTSH-HHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHH
T ss_pred EEEECCCCCCCCCC-HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf 99988635588764-99999999997631478878599972775545522489999999999985498488545431788
Q ss_pred HHHHHHHHH-----------------HHHHHHHHHHHHHHHH----------------------HHHHHHHHHHCCCCCE
Q ss_conf 999983232-----------------4999999998622346----------------------7787766731189851
Q 000482 494 FQEEFKDIN-----------------QEEQISRLHRMLAPHL----------------------LRRVKKDVMKELPPKK 534 (1464)
Q Consensus 494 F~~~f~~~~-----------------~~~~i~~L~~lL~p~l----------------------lRR~K~dv~~~LPpk~ 534 (1464)
+...+.... ....+..++..+..++ ....+......++
T Consensus 454 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--- 530 (797)
T 4a2q_A 454 LQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLE--- 530 (797)
T ss_dssp HHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCS---
T ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC---
T ss_conf 99735888548884577778678999999999999999998756776530000114056778999999987774034---
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHH------HHH--HHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-------HH
Q ss_conf 451013589999999999999899------998--720896026999999999971786534688999435-------06
Q 000482 535 ELILRVELSSKQKEYYKAILTRNY------QIL--TRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED-------TN 599 (1464)
Q Consensus 535 e~iv~v~Ls~~Qk~~Y~~il~~~~------~~l--~~~~~~~~~l~nil~~LRk~cnHP~L~~~~e~~~~~-------~~ 599 (1464)
....+...|..+..... ..+ ....+ .......++..+.+..- .+..+.... ..
T Consensus 531 -------~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 598 (797)
T 4a2q_A 531 -------DKEEESRICRALFICTEHLRKYNDALIISEDAR----IIDALSYLTEFFTNVKN-GPYTELEQHLTAKFQEKE 598 (797)
T ss_dssp -------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----HHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHTTH
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHH
T ss_conf -------320256799999999999999998876541325----88899999999998750-476689999999999999
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHH------------CCCEEEEEECCCC
Q ss_conf 89999----8831017999999999998--6086399992321258999999862------------6970899976779
Q 000482 600 ESFKQ----LLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTF------------KKWQYERIDGKVG 661 (1464)
Q Consensus 600 ~~~~~----li~~SgKl~~L~kLL~~l~--~~g~KVLIFSq~~~~LdiLe~~L~~------------~g~~~~ridGs~~ 661 (1464)
..+.. ....++|+..|.++|.... ..++|+||||+++.+++.|.++|.. .|..+..++|+++
T Consensus 599 ~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~ 678 (797)
T 4a2q_A 599 PELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMT 678 (797)
T ss_dssp HHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf 99987630788899599999999999850589970899979589999999999747564665521898447754578989
Q ss_pred HHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHCHHHHHHHHHHCCCCCCEEEEEEEECCCH
Q ss_conf 9999999999833-599960899623654445586678899995599990017989883310299980799999738999
Q 000482 662 GAERQIRIDRFNA-KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSI 740 (1464)
Q Consensus 662 ~~eRq~~Id~Fn~-~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QA~gRahRiGQ~k~V~VyrLit~~Tv 740 (1464)
..+|+.+++.|++ +... +|++|+++++|||++.+++||+||++|||..++|++|| |+.+++.+|.|++.+++
T Consensus 679 ~~eR~~~l~~F~~~g~~~---vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR----GR~~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 679 LPSQKGVLDAFKTSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEV 751 (797)
T ss_dssp ---------------CCS---EEEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHH
T ss_pred HHHHHHHHHHHHCCCCCE---EEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCH
T ss_conf 999999999851369704---99974805447975108989994899988999985388----87878659999728768
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 9999999999889999996320006899999999
Q 000482 741 EERMMQMTKKKMVLEHLVVGRLKAQNINQEELDD 774 (1464)
Q Consensus 741 EE~I~e~a~~K~~L~~~Vig~~~~~~~~~~el~~ 774 (1464)
+++ ......|..+...++..+ +.++.+++..
T Consensus 752 ee~-~~~~~~ke~~~~~~i~~l--~~~~~~~~~~ 782 (797)
T 4a2q_A 752 VEN-EKCNRYKEEMMNKAVEKI--QKWDEETFAK 782 (797)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHH--HTSCHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHH--HCCCHHHHHH
T ss_conf 899-998889999999999987--4579899999
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=327.07 Aligned_cols=429 Identities=14% Similarity=0.190 Sum_probs=264.5
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC----CCCEEEEECC-CCHHHHHHHHHHHCC-
Q ss_conf 9996889999999998540597279990589950899999999987189----9959999843-209999999998879-
Q 000482 286 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWAP- 359 (1464)
Q Consensus 286 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~----~~p~LIVvP~-sll~qW~~El~k~~P- 359 (1464)
.+|+|||.+++.++ ..+.++|++++||+|||++++..+..+.... ..++|||||. +++.||.++|.++++
T Consensus 6 ~~~~~~Q~~~i~~~----~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHH----HCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 78779999999999----74998999819997189999999999998374567986999928899999999999987240
Q ss_pred -CCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHCC--C-CCCCEEEEE
Q ss_conf -990999985815788999752127899111100136763223322345553999217888720012--4-787403787
Q 000482 360 -QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--L-KPIKWQCMI 435 (1464)
Q Consensus 360 -~l~vv~y~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdViItSYe~l~~d~~~--L-~~i~w~~II 435 (1464)
++++..++|........... ....+|+|+|++.+...... + ..-.|++||
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~--------------------------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vV 135 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKV--------------------------IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMI 135 (556)
T ss_dssp GTCCEEECCCC-----CHHHH--------------------------HHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEE
T ss_pred CCCEEEEEECCCCCCHHHHHH--------------------------HCCCCEEEECHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 694599982898742228986--------------------------179999998899999999837502503077999
Q ss_pred ECCCCCCCCCCHHHHHHHHHC--------CCCCEEEECCCCCCCCH-------HHHHHHHHHHCCCCCC----CHHHHHH
Q ss_conf 044332488213999999811--------13537860366667999-------8999999742279889----9588999
Q 000482 436 VDEGHRLKNKDSKLFSSLKQY--------STRHRVLLTGTPLQNNL-------DELFMLMHFLDAGKFG----SLEEFQE 496 (1464)
Q Consensus 436 iDEAHrlKN~~Sk~~~~l~~l--------~~~~rLLLTGTPlqNnl-------~EL~sLL~fL~p~~f~----~~~~F~~ 496 (1464)
+||||++.+...........+ ....+++|||||.+++. ..+..+...+....+. ....+..
T Consensus 136 iDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~ 215 (556)
T 4a2p_A 136 FDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQR 215 (556)
T ss_dssp EETGGGCSTTSHHHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHH
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCHHCCHHHHHH
T ss_conf 98875358864599999999985301368887699994785667516699999999999985398484333202677874
Q ss_pred HHHHHH-------------HHH----HHHHHHHHHHH----------------------HHHHHHHHHHHHCCCCCEEEE
Q ss_conf 983232-------------499----99999986223----------------------467787766731189851451
Q 000482 497 EFKDIN-------------QEE----QISRLHRMLAP----------------------HLLRRVKKDVMKELPPKKELI 537 (1464)
Q Consensus 497 ~f~~~~-------------~~~----~i~~L~~lL~p----------------------~llRR~K~dv~~~LPpk~e~i 537 (1464)
.+.... ... .+..++..+.. ++....+......+|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------ 289 (556)
T 4a2p_A 216 FMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLE------ 289 (556)
T ss_dssp HTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---------
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC------
T ss_conf 27998537998278767759999999999999999888632012103333443356789999999987764054------
Q ss_pred ECCCCCHHHHHHHHHHHHHHHH------HH--HHCCCCHHHHHHHHHH-HHHHHCCCCCCCCCCCCCCCHHHHH------
Q ss_conf 0135899999999999998999------98--7208960269999999-9997178653468899943506899------
Q 000482 538 LRVELSSKQKEYYKAILTRNYQ------IL--TRRGGAQISLINVVME-LRKLCCHPYMLEGVEPDIEDTNESF------ 602 (1464)
Q Consensus 538 v~v~Ls~~Qk~~Y~~il~~~~~------~l--~~~~~~~~~l~nil~~-LRk~cnHP~L~~~~e~~~~~~~~~~------ 602 (1464)
....+...|..+...... .+ ....+.. .....+.. +.....+.+ ......+
T Consensus 290 ----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~ 355 (556)
T 4a2p_A 290 ----DKEEESRICRALFICTEHLRKYNDALIISEDARII-DALSYLTEFFTNVKNGPY---------TELEQHLTAKFQE 355 (556)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHHHSCC---------CHHHHHHHHHHHT
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHH
T ss_conf ----32016789999999999999999999886112078-999999999999873379---------8789999998766
Q ss_pred -----HHH----HHHHHHHHHHHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHHC------------CCEEEEEECC
Q ss_conf -----998----831017999999999998--60863999923212589999998626------------9708999767
Q 000482 603 -----KQL----LESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFK------------KWQYERIDGK 659 (1464)
Q Consensus 603 -----~~l----i~~SgKl~~L~kLL~~l~--~~g~KVLIFSq~~~~LdiLe~~L~~~------------g~~~~ridGs 659 (1464)
... ...++|+..|.++|.... ..++|+||||++..+++.|.++|... |..+..++|+
T Consensus 356 ~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~ 435 (556)
T 4a2p_A 356 KEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTG 435 (556)
T ss_dssp THHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCC
T ss_conf 78876421037899996999999999998347998549999765899999999998587755000147873677655656
Q ss_pred CCHHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHCHHHHHHHHHHCCCCCCEEEEEEEECC
Q ss_conf 799999999999833-5999608996236544455866788999955999900179898833102999807999997389
Q 000482 660 VGGAERQIRIDRFNA-KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 738 (1464)
Q Consensus 660 ~~~~eRq~~Id~Fn~-~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QA~gRahRiGQ~k~V~VyrLit~~ 738 (1464)
++..+|+.+++.|++ +... +|++|+++++|||++.+++||+||++|||..++|++|| |+.+++.+|.|++.+
T Consensus 436 ~~~~~R~~~~~~F~~~g~~~---vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~ 508 (556)
T 4a2p_A 436 MTLPSQKGVLDAFKTSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKT 508 (556)
T ss_dssp ------------------CC---EEEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCH
T ss_pred CCHHHHHHHHHHHCCCCCEE---EEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECC
T ss_conf 69899999999840469658---99976704337775217889991899978899886387----878884189998276
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 999999999999889999996320006899999999
Q 000482 739 SIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDD 774 (1464)
Q Consensus 739 TvEE~I~e~a~~K~~L~~~Vig~~~~~~~~~~el~~ 774 (1464)
+++++ ......|..+...++..+ +.++.+++..
T Consensus 509 ~~~~~-~~~~~~k~~~~~~~i~~i--~~~~~~~~~~ 541 (556)
T 4a2p_A 509 EVVEN-EKCNRYKEEMMNKAVEKI--QKWDEETFAK 541 (556)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHH--HTSCHHHHHH
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHH--HCCCHHHHHH
T ss_conf 36777-775579999999999972--0689678999
Done!