Query 000483
Match_columns 1464
No_of_seqs 372 out of 1491
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 10:23:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000483.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000483hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0892 Protein kinase ATM/Tel 100.0 1E-174 2E-179 1682.8 79.7 1251 5-1464 1510-2806(2806)
2 KOG0890 Protein kinase of the 100.0 1E-156 3E-161 1510.5 81.6 1223 11-1464 1080-2382(2382)
3 KOG0891 DNA-dependent protein 100.0 2.2E-96 5E-101 983.1 49.9 1087 183-1464 1129-2341(2341)
4 COG5032 TEL1 Phosphatidylinosi 100.0 3.5E-76 7.6E-81 812.5 60.3 1085 183-1464 921-2105(2105)
5 KOG0889 Histone acetyltransfer 100.0 4.1E-74 8.9E-79 760.1 65.0 967 330-1464 2413-3550(3550)
6 cd05171 PIKKc_ATM Ataxia telan 100.0 7.2E-69 1.6E-73 615.7 25.7 273 1104-1380 1-278 (279)
7 cd05170 PIKKc_SMG1 Suppressor 100.0 3.5E-67 7.6E-72 608.3 24.7 276 1104-1380 1-306 (307)
8 cd05163 TRRAP TRansformation/t 100.0 5.9E-67 1.3E-71 590.0 23.3 247 1104-1380 1-252 (253)
9 cd05169 PIKKc_TOR TOR (Target 100.0 2.8E-66 6.1E-71 597.1 22.9 275 1104-1380 1-279 (280)
10 cd05172 PIKKc_DNA-PK DNA-depen 100.0 2.4E-64 5.3E-69 562.8 23.0 233 1104-1380 1-234 (235)
11 cd00892 PIKKc_ATR ATR (Ataxia 100.0 7.4E-63 1.6E-67 552.1 22.8 236 1104-1380 1-236 (237)
12 cd05164 PIKKc Phosphoinositide 100.0 1.7E-59 3.7E-64 520.5 22.3 222 1104-1374 1-222 (222)
13 cd00142 PI3Kc_like Phosphoinos 100.0 1.6E-54 3.6E-59 481.7 22.1 219 1104-1374 1-219 (219)
14 cd00891 PI3Kc Phosphoinositide 100.0 5.8E-53 1.3E-57 493.9 28.4 250 1084-1380 47-303 (352)
15 cd00896 PI3Kc_III Phosphoinosi 100.0 2.4E-52 5.1E-57 487.7 27.3 288 1084-1464 51-350 (350)
16 cd05166 PI3Kc_II Phosphoinosit 100.0 7.7E-52 1.7E-56 483.2 27.5 248 1085-1380 48-304 (353)
17 cd05165 PI3Kc_I Phosphoinositi 100.0 1E-50 2.2E-55 472.7 28.4 250 1085-1380 53-316 (366)
18 cd05168 PI4Kc_III_beta Phospho 100.0 2.1E-51 4.5E-56 468.3 19.3 268 1116-1462 14-287 (293)
19 cd05177 PI3Kc_C2_gamma Phospho 100.0 2.3E-50 4.9E-55 468.0 27.5 248 1085-1380 49-305 (354)
20 smart00146 PI3Kc Phosphoinosit 100.0 3.4E-51 7.4E-56 449.9 18.4 199 1134-1382 1-200 (202)
21 cd00894 PI3Kc_IB_gamma Phospho 100.0 1.5E-48 3.1E-53 453.0 25.4 248 1084-1378 53-313 (365)
22 cd05174 PI3Kc_IA_delta Phospho 100.0 1.3E-48 2.9E-53 452.7 24.1 249 1085-1378 52-309 (361)
23 cd00893 PI4Kc_III Phosphoinosi 100.0 9.6E-49 2.1E-53 445.7 19.9 223 1111-1380 8-238 (289)
24 cd05176 PI3Kc_C2_alpha Phospho 100.0 1.5E-47 3.2E-52 442.0 29.3 263 1068-1379 33-303 (353)
25 cd05173 PI3Kc_IA_beta Phosphoi 100.0 7E-48 1.5E-52 448.4 24.4 250 1085-1380 52-311 (362)
26 PF00454 PI3_PI4_kinase: Phosp 100.0 7.8E-49 1.7E-53 442.9 15.4 229 1132-1380 1-234 (235)
27 cd05167 PI4Kc_III_alpha Phosph 100.0 5.7E-47 1.2E-51 434.0 22.6 270 1108-1461 15-304 (311)
28 cd00895 PI3Kc_C2_beta Phosphoi 100.0 1.3E-44 2.7E-49 417.9 27.0 246 1085-1378 49-303 (354)
29 cd05175 PI3Kc_IA_alpha Phospho 100.0 5.9E-44 1.3E-48 412.4 25.4 247 1085-1378 52-314 (366)
30 KOG0905 Phosphoinositide 3-kin 100.0 4.5E-36 9.7E-41 366.2 25.6 415 897-1381 859-1299(1639)
31 KOG0906 Phosphatidylinositol 3 100.0 3E-35 6.5E-40 343.9 30.3 418 895-1384 308-793 (843)
32 PF02259 FAT: FAT domain; Int 100.0 9E-35 1.9E-39 346.9 30.8 317 509-921 1-352 (352)
33 KOG0904 Phosphatidylinositol 3 100.0 4.6E-34 1E-38 343.0 28.1 419 895-1380 578-1027(1076)
34 KOG0902 Phosphatidylinositol 4 100.0 2.2E-28 4.8E-33 305.2 27.0 419 896-1386 1284-1757(1803)
35 KOG0903 Phosphatidylinositol 4 99.9 2.8E-25 6E-30 266.1 21.0 198 1129-1373 584-786 (847)
36 PTZ00303 phosphatidylinositol 99.9 3.9E-24 8.6E-29 252.2 12.5 165 1118-1340 1026-1201(1374)
37 PF02260 FATC: FATC domain; I 99.3 2.4E-13 5.2E-18 103.8 0.9 32 1433-1464 2-33 (33)
38 KOG0892 Protein kinase ATM/Tel 98.8 2.8E-09 6.1E-14 143.9 7.4 451 890-1382 1949-2416(2806)
39 TIGR02917 PEP_TPR_lipo putativ 95.6 1.6 3.5E-05 58.3 25.9 59 683-749 840-898 (899)
40 smart00145 PI3Ka Phosphoinosit 93.4 0.22 4.7E-06 54.5 7.7 98 895-998 43-155 (184)
41 TIGR02917 PEP_TPR_lipo putativ 92.4 51 0.0011 44.1 37.2 85 337-435 436-529 (899)
42 cd00870 PI3Ka_III Phosphoinosi 92.3 0.21 4.6E-06 53.7 5.6 102 895-996 45-162 (166)
43 cd00872 PI3Ka_I Phosphoinositi 92.2 0.21 4.6E-06 53.9 5.3 98 895-998 38-150 (171)
44 PLN03218 maturation of RBCL 1; 90.7 40 0.00086 46.9 25.8 54 381-434 473-536 (1060)
45 cd00864 PI3Ka Phosphoinositide 90.3 0.44 9.6E-06 50.6 5.4 95 896-996 39-148 (152)
46 PLN03081 pentatricopeptide (PP 89.4 25 0.00053 46.8 22.0 290 381-751 260-557 (697)
47 PRK10747 putative protoheme IX 87.3 79 0.0017 39.0 23.1 59 680-747 328-386 (398)
48 PF00613 PI3Ka: Phosphoinositi 87.0 0.73 1.6E-05 50.5 4.5 98 895-998 44-156 (184)
49 PRK15174 Vi polysaccharide exp 86.7 1.2E+02 0.0027 40.1 25.8 113 334-490 44-165 (656)
50 cd00869 PI3Ka_II Phosphoinosit 86.6 1.1 2.4E-05 48.2 5.5 97 895-998 38-150 (169)
51 PLN03218 maturation of RBCL 1; 85.8 48 0.001 46.1 21.7 299 333-709 473-783 (1060)
52 PRK11447 cellulose synthase su 82.7 2.4E+02 0.0052 40.1 29.5 83 680-770 637-722 (1157)
53 PLN03077 Protein ECB2; Provisi 78.9 1.9E+02 0.0042 39.5 23.7 51 382-432 426-482 (857)
54 PF13575 DUF4135: Domain of un 77.5 11 0.00025 45.9 10.3 111 1128-1315 68-178 (370)
55 PLN03077 Protein ECB2; Provisi 75.0 3.3E+02 0.0071 37.3 30.2 80 380-488 323-408 (857)
56 TIGR02906 spore_CotS spore coa 74.3 43 0.00092 39.4 13.8 31 1280-1312 184-214 (313)
57 PRK15174 Vi polysaccharide exp 74.1 2.1E+02 0.0045 38.0 21.2 67 679-753 283-349 (656)
58 cd00871 PI4Ka Phosphoinositide 72.5 14 0.0003 40.2 8.1 64 929-1000 84-150 (175)
59 cd05145 RIO1_like RIO kinase f 71.8 4.6 0.0001 44.2 4.5 48 1288-1359 142-189 (190)
60 PF13432 TPR_16: Tetratricopep 69.1 21 0.00046 31.4 7.3 61 685-753 2-62 (65)
61 PLN03081 pentatricopeptide (PP 69.0 2.2E+02 0.0048 37.9 20.1 282 335-709 262-557 (697)
62 TIGR00990 3a0801s09 mitochondr 69.0 2.3E+02 0.0049 37.2 19.9 237 408-750 334-570 (615)
63 PF14559 TPR_19: Tetratricopep 67.3 12 0.00026 33.1 5.5 56 691-754 2-57 (68)
64 PRK11447 cellulose synthase su 66.0 5.7E+02 0.012 36.4 33.3 79 682-771 463-541 (1157)
65 TIGR02172 Fb_sc_TIGR02172 Fibr 62.2 83 0.0018 35.7 12.2 27 1284-1312 154-180 (226)
66 KOG1129 TPR repeat-containing 62.1 98 0.0021 36.7 12.4 85 336-435 227-320 (478)
67 cd05147 RIO1_euk RIO kinase fa 61.1 5 0.00011 44.2 2.0 47 1288-1358 142-188 (190)
68 PF12688 TPR_5: Tetratrico pep 61.0 24 0.00053 36.0 6.8 55 412-493 8-62 (120)
69 KOG4626 O-linked N-acetylgluco 59.6 5.1E+02 0.011 33.7 27.0 90 332-435 48-146 (966)
70 KOG3365 NADH:ubiquinone oxidor 59.3 5.6 0.00012 40.7 1.8 37 1417-1463 93-129 (145)
71 PF13176 TPR_7: Tetratricopept 54.9 16 0.00035 28.6 3.4 25 410-434 4-28 (36)
72 PF13371 TPR_9: Tetratricopept 54.8 56 0.0012 29.2 7.6 59 688-754 3-61 (73)
73 TIGR03843 conserved hypothetic 54.8 11 0.00023 42.9 3.2 45 1274-1319 134-178 (253)
74 PRK11788 tetratricopeptide rep 54.2 4.6E+02 0.01 31.5 29.1 94 683-788 252-348 (389)
75 PF14559 TPR_19: Tetratricopep 54.2 22 0.00048 31.4 4.7 51 417-497 3-53 (68)
76 PF04781 DUF627: Protein of un 53.4 36 0.00078 34.2 6.3 63 727-790 1-65 (111)
77 KOG0608 Warts/lats-like serine 52.1 9.7 0.00021 48.2 2.6 38 1274-1314 739-778 (1034)
78 COG5032 TEL1 Phosphatidylinosi 51.3 1.2E+03 0.026 35.5 26.7 107 383-524 1126-1234(2105)
79 PRK10370 formate-dependent nit 51.3 1.6E+02 0.0035 32.6 11.9 68 678-753 71-141 (198)
80 cd05151 ChoK Choline Kinase (C 50.3 13 0.00027 39.3 2.9 30 1282-1313 106-135 (170)
81 TIGR02795 tol_pal_ybgF tol-pal 49.9 1.7E+02 0.0036 28.3 10.8 84 682-770 4-87 (119)
82 PF13414 TPR_11: TPR repeat; P 49.8 74 0.0016 28.1 7.4 63 680-750 3-66 (69)
83 PF02985 HEAT: HEAT repeat; I 48.3 22 0.00047 27.0 3.1 29 94-122 1-29 (31)
84 KOG3087 Serine/threonine prote 47.4 1.1E+02 0.0023 34.1 9.1 28 1288-1315 137-166 (229)
85 PF13414 TPR_11: TPR repeat; P 46.7 44 0.00096 29.6 5.5 49 409-487 7-56 (69)
86 TIGR03724 arch_bud32 Kae1-asso 46.2 15 0.00033 40.0 2.8 24 1287-1312 113-136 (199)
87 KOG0594 Protein kinase PCTAIRE 45.1 15 0.00032 43.7 2.6 28 1288-1316 144-171 (323)
88 PF13429 TPR_15: Tetratricopep 44.9 30 0.00065 40.2 5.1 86 334-435 80-176 (280)
89 PF13424 TPR_12: Tetratricopep 44.6 75 0.0016 28.9 6.8 71 678-749 3-73 (78)
90 cd05144 RIO2_C RIO kinase fami 44.1 18 0.00038 39.7 3.0 31 1285-1316 146-176 (198)
91 PF08424 NRDE-2: NRDE-2, neces 44.0 1.6E+02 0.0035 35.3 11.2 98 639-737 82-211 (321)
92 COG0661 AarF Predicted unusual 43.5 15 0.00033 46.8 2.5 24 1288-1312 289-312 (517)
93 PRK04750 ubiB putative ubiquin 42.6 15 0.00032 47.1 2.2 25 1287-1312 283-311 (537)
94 PRK10359 lipopolysaccharide co 42.3 16 0.00035 41.7 2.3 23 1288-1312 159-181 (232)
95 cd05119 RIO RIO kinase family, 41.4 18 0.00039 38.9 2.5 26 1287-1314 138-163 (187)
96 PF06293 Kdo: Lipopolysacchari 40.7 46 0.00099 37.0 5.6 48 1148-1204 56-111 (206)
97 TIGR02521 type_IV_pilW type IV 40.2 2.7E+02 0.0059 29.8 11.7 86 335-434 34-128 (234)
98 PF13432 TPR_16: Tetratricopep 40.1 55 0.0012 28.7 5.0 50 411-490 3-52 (65)
99 PRK14879 serine/threonine prot 39.5 22 0.00048 39.1 2.8 25 1287-1313 118-142 (211)
100 smart00090 RIO RIO-like kinase 38.8 21 0.00046 40.8 2.6 28 1287-1316 172-199 (237)
101 TIGR01982 UbiB 2-polyprenylphe 37.2 22 0.00049 44.4 2.7 24 1288-1312 281-304 (437)
102 PF13428 TPR_14: Tetratricopep 36.9 1E+02 0.0022 25.2 5.7 31 725-755 4-34 (44)
103 cd00189 TPR Tetratricopeptide 36.8 2.4E+02 0.0052 24.6 9.0 62 683-752 3-64 (100)
104 cd04792 LanM-like LanM-like pr 36.5 2.8E+02 0.0061 37.7 13.1 107 1129-1315 112-218 (825)
105 TIGR02552 LcrH_SycD type III s 34.9 2.2E+02 0.0047 28.6 9.1 67 679-753 50-116 (135)
106 PF01636 APH: Phosphotransfera 34.7 28 0.00061 38.4 2.7 33 1280-1312 163-195 (239)
107 KOG0616 cAMP-dependent protein 34.6 22 0.00048 41.5 1.8 26 1288-1314 168-193 (355)
108 PF13429 TPR_15: Tetratricopep 33.9 1.6E+02 0.0036 34.0 9.0 87 335-435 149-244 (280)
109 PF01163 RIO1: RIO1 family; I 33.7 16 0.00036 40.2 0.6 27 1288-1316 131-157 (188)
110 PF00515 TPR_1: Tetratricopept 33.6 61 0.0013 24.5 3.6 26 410-435 6-31 (34)
111 KOG2076 RNA polymerase III tra 33.2 8.4E+02 0.018 33.0 15.5 153 707-948 124-276 (895)
112 KOG0603 Ribosomal protein S6 k 32.5 30 0.00065 44.2 2.6 40 1276-1315 427-466 (612)
113 KOG1126 DNA-binding cell divis 32.3 1.2E+03 0.025 30.6 16.2 169 718-944 420-588 (638)
114 PF13525 YfiO: Outer membrane 31.4 3.7E+02 0.008 29.8 10.9 82 681-767 6-87 (203)
115 PRK12274 serine/threonine prot 31.4 36 0.00077 38.4 2.7 25 1288-1313 115-140 (218)
116 PRK09550 mtnK methylthioribose 31.4 6.5E+02 0.014 31.3 13.8 30 1282-1313 222-251 (401)
117 PRK15179 Vi polysaccharide bio 30.9 2E+02 0.0043 38.4 9.9 117 335-495 89-215 (694)
118 PRK01723 3-deoxy-D-manno-octul 30.9 34 0.00074 39.1 2.6 26 1287-1313 165-190 (239)
119 COG3642 Mn2+-dependent serine/ 30.1 41 0.00089 37.2 2.8 33 1170-1203 57-91 (204)
120 PF07719 TPR_2: Tetratricopept 29.9 73 0.0016 23.8 3.5 26 411-436 7-32 (34)
121 TIGR03302 OM_YfiO outer membra 29.0 4E+02 0.0087 29.7 10.9 85 680-769 33-117 (235)
122 PF09976 TPR_21: Tetratricopep 28.7 1.5E+02 0.0032 30.8 6.8 62 682-748 50-111 (145)
123 cd05156 ChoK_euk Choline Kinas 28.5 74 0.0016 37.4 5.0 33 1280-1312 176-211 (302)
124 cd05120 APH_ChoK_like Aminogly 28.1 50 0.0011 33.2 3.0 25 1288-1313 113-137 (155)
125 PF13371 TPR_9: Tetratricopept 27.7 1.4E+02 0.003 26.6 5.5 50 413-492 3-52 (73)
126 PLN03088 SGT1, suppressor of 27.5 2.7E+02 0.0059 33.9 9.7 86 336-435 6-100 (356)
127 PF13424 TPR_12: Tetratricopep 26.3 1.3E+02 0.0028 27.4 5.1 26 409-434 9-34 (78)
128 PF12895 Apc3: Anaphase-promot 26.2 2E+02 0.0044 26.6 6.6 73 346-430 3-83 (84)
129 KOG1155 Anaphase-promoting com 26.2 1.3E+03 0.027 29.3 14.3 158 729-943 337-496 (559)
130 TIGR02521 type_IV_pilW type IV 25.9 6.4E+02 0.014 26.9 11.6 86 336-435 69-165 (234)
131 cd05154 ACAD10_11_like Acyl-Co 25.8 51 0.0011 36.1 2.8 32 1281-1312 172-204 (223)
132 PF13513 HEAT_EZ: HEAT-like re 25.8 87 0.0019 26.7 3.6 34 87-120 22-55 (55)
133 TIGR02795 tol_pal_ybgF tol-pal 25.4 3.8E+02 0.0081 25.8 8.7 70 681-755 40-109 (119)
134 PRK11788 tetratricopeptide rep 24.6 1.3E+03 0.027 27.7 29.0 63 682-752 109-171 (389)
135 TIGR00540 hemY_coli hemY prote 24.6 1.4E+03 0.03 28.2 21.1 60 681-747 336-395 (409)
136 cd05157 ETNK_euk Ethanolamine 24.2 1.3E+02 0.0027 33.8 5.7 32 1281-1312 168-199 (235)
137 PRK10866 outer membrane biogen 24.2 5.2E+02 0.011 29.7 10.7 82 681-767 33-114 (243)
138 PF06176 WaaY: Lipopolysacchar 24.1 60 0.0013 36.9 2.9 22 1288-1311 159-180 (229)
139 KOG1006 Mitogen-activated prot 24.1 46 0.001 38.5 2.0 59 1288-1347 192-268 (361)
140 PRK10803 tol-pal system protei 23.3 4.8E+02 0.01 30.4 10.2 83 682-769 144-227 (263)
141 TIGR03504 FimV_Cterm FimV C-te 23.3 1.3E+02 0.0028 25.2 3.9 39 725-764 2-40 (44)
142 PRK05685 fliS flagellar protei 22.6 4.6E+02 0.0099 27.2 8.9 48 548-595 39-93 (132)
143 PF14938 SNAP: Soluble NSF att 22.4 6.3E+02 0.014 29.5 11.2 109 679-792 34-145 (282)
144 PF13174 TPR_6: Tetratricopept 22.2 1.3E+02 0.0029 22.1 3.7 30 725-754 3-32 (33)
145 cd05155 APH_ChoK_like_1 Unchar 22.1 67 0.0015 36.3 2.9 30 1281-1312 162-192 (235)
146 PF01633 Choline_kinase: Choli 22.1 94 0.002 34.5 4.0 32 1281-1312 141-172 (211)
147 KOG1840 Kinesin light chain [C 21.6 1.7E+03 0.036 28.8 15.1 167 653-820 212-387 (508)
148 PF06702 DUF1193: Protein of u 21.6 86 0.0019 35.4 3.4 91 1274-1377 91-183 (221)
149 PF02202 Tachykinin: Tachykini 21.1 31 0.00068 20.4 -0.0 9 394-402 2-10 (11)
150 PRK15359 type III secretion sy 21.1 5.8E+02 0.013 26.5 9.5 67 679-753 57-123 (144)
151 PF12688 TPR_5: Tetratrico pep 21.0 3.7E+02 0.008 27.5 7.6 62 679-745 37-98 (120)
152 cd00180 PKc Catalytic domain o 20.9 5.3E+02 0.011 26.9 9.5 30 1285-1314 113-142 (215)
153 PF00069 Pkinase: Protein kina 20.8 90 0.0019 35.0 3.6 26 1287-1313 121-146 (260)
154 KOG0994 Extracellular matrix g 20.7 4.5E+02 0.0098 36.3 9.8 52 893-944 1475-1528(1758)
155 PLN02421 phosphotransferase, a 20.1 1.2E+02 0.0027 36.3 4.7 34 1281-1314 180-213 (330)
No 1
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1e-174 Score=1682.78 Aligned_cols=1251 Identities=40% Similarity=0.595 Sum_probs=1007.5
Q ss_pred cccCCChhHHHHHHHHHHhhcCCCcccHHHHHHHHHhhhCCCCCcEEEEecCCCccccccccCCCCCCCCCccceeccCc
Q 000483 5 VDWHSDHDIVHAVWTLVHMCCSDDASSIRAWVSDFISRVGIGDPHCVVFHLPRDSIYMHACRPINHGSGSATEFNFHLDA 84 (1464)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1464)
.+|+.+++++..+|..+++-....+-+.....-+|+.+++..|+|.++|++|+..+++|+-.-..+. .+.-+.-.+-.
T Consensus 1510 ~~~q~~~e~v~~~~~~~q~~~~~~~~~~~e~~~~~~~~v~~~~~~~L~~~~~~~~~~s~g~~i~~~~--~~~n~~~~~K~ 1587 (2806)
T KOG0892|consen 1510 WFWQKSPEIVDLVHYYPQTDPRLCDTSNYEPSKDFLWKVICQDDCSLLFKLPILLDSSIGIQIRMFF--EGSNIMELTKN 1587 (2806)
T ss_pred hHHhcCccceechhhcccCChhhhhhcccCchhhhhhchhccccceEEEEcCcccccchhhhhhhcc--ccchhhhhhhh
Confidence 4799999999999999999999999999999999999999999999999999998877754432222 23334444556
Q ss_pred cchHHHHHHHHHHHHHhhhcCcchhhchHHHHHHHHhccccccchhhchhHHHHHHHHhhhccCcchhhHhhhhhhhhhh
Q 000483 85 GISEELLIAVLKILKKYLMDDSVQIVDMTSQTLRGILSTEKGQRAVMSFDSYERSLLEVHSKGVNVELVETFLLDLERKF 164 (1464)
Q Consensus 85 ~~~~~~~~~il~~l~~~l~~~~~~~~~~a~~~L~~ils~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (1464)
++.++........+..+..+..+.+.....++....+++-.+......++.|.+.+++++
T Consensus 1588 ~i~~~dk~~~~~~~~~~~~~~~~~~~~il~~t~~es~s~w~s~~~ls~f~~c~~~~~~~~-------------------- 1647 (2806)
T KOG0892|consen 1588 LIFPLDKITLDSFLKTLVSEEGSFIIDILQQTNNESLSNWLSEFALKLFNMCGRSSTTHS-------------------- 1647 (2806)
T ss_pred hccchhHHHHHHHHHHHhhccchhHHHHHhhhhccchhhHHHHHHHHHHHHHhccCCchh--------------------
Confidence 788888888889999999999999999999999999999888888777888877776632
Q ss_pred hcCCCCCCCCCccccCCCCHHhhHHHHHHHhhccCCchhhhhcHHHHhccHhHHHHHhHHHHHHHhcCCCcchhHHHHHH
Q 000483 165 KANGISPEKSTVWETDGKTFETWICPLTYSLIGCCNDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGSKNVDVDLQKLIS 244 (1464)
Q Consensus 165 ~~~~~~~~~~~~w~~~~~s~~~Wi~~l~~~Ll~~~~~~~L~~~~~l~~~~~~~A~~LlP~~v~~i~~~~d~~~~~~~~ls 244 (1464)
|.++......|++.++..+|-.+.+.. |..+....--+-+.++|.+..+
T Consensus 1648 ------------~st~~~~~~t~i~~~i~~~l~~~s~~~---~~~~~~~~~yi~~~~~~sl~~n---------------- 1696 (2806)
T KOG0892|consen 1648 ------------LSTYMANFSTSICQLIICLLLLESDFN---PGNNLKQKDYIFELILSSLLKN---------------- 1696 (2806)
T ss_pred ------------hccccccccHHHHHHHHHHHHhhcccc---HHHHHHHHHHHHHHHhhccccc----------------
Confidence 444555578899999988874333222 4444444444444444443211
Q ss_pred HHHHhhhhhccchhhHHHHHHHHHHHHHhHhhHhhhccCCCCCcccccccccCCCCCCCccchhhhhhhhhhcccccccc
Q 000483 245 SQVQKYIFTESNKLIKSIQVFLNALNELRLCHVMERSSSVPPKRESSKYVKHSGSSAKPRSTSAKARDVVATSNATMTTS 324 (1464)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~q~~l~~~~~Lr~~~~~e~~~~~p~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 324 (1464)
.-....+-+|.+.++|.+ ++-.+ -+.
T Consensus 1697 -------------~~~~~~m~~ni~~~~~~~---~~~~~--------------------------------------~n~ 1722 (2806)
T KOG0892|consen 1697 -------------SNSIFKMDMNILKYLRRQ---LGCHA--------------------------------------FNP 1722 (2806)
T ss_pred -------------hhHHHHHHHHHHHHHHHh---hchhh--------------------------------------hcc
Confidence 011233345666666654 11100 013
Q ss_pred cccccccccCHHHHHHHHHHhchhhHHHHhhHhHHHHhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhc
Q 000483 325 WDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ 404 (1464)
Q Consensus 325 ~~~~~wL~Id~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPD~~yGi~~ 404 (1464)
|....|+++++...+-++.+|.+|-..++|.=+.-.+ ..+........+|+|.++|+.|++||++||+..
T Consensus 1723 ~~~~~~~~~~~~~~~~~~~~~~~~e~s~~~~t~~~~k----------~k~~e~~~~~lqDil~~~y~~I~~pD~lyG~~~ 1792 (2806)
T KOG0892|consen 1723 FEIYYWLPIVYSVAASTAYDCLLFEYSLLSLTIHSPK----------NKRDELDITLLQDILKKAYESINCPDALYGIKR 1792 (2806)
T ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHHHHHhhcCcc----------cchhHHHHHHHHHHHHHHHhhCCCcchhcccCC
Confidence 4455689999999999999998888888776541100 111122334456778888999999999999998
Q ss_pred ccchh-hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhc
Q 000483 405 SHKLS-SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVG 483 (1464)
Q Consensus 405 ~~~l~-~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG 483 (1464)
...++ .+++.+||+++|.+||..||..-. .|+ . ....|.+++|++.|
T Consensus 1793 ~~~~~~~~l~~~~he~~w~~aL~~~d~~~~------------------~~s-------------s-~~~~~~~~sLq~~g 1840 (2806)
T KOG0892|consen 1793 PTSLKNLILITAEHEKNWPRALSYYDLADM------------------YPS-------------S-EDEAGFINSLQNAG 1840 (2806)
T ss_pred cccccccccchhhhhhhHHHHHHhhcchhh------------------ccc-------------h-HhHhHHHHHHHHhc
Confidence 77777 689999999999999999998653 133 1 12379999999999
Q ss_pred hhhHHHHhhhccccccCCCCCCcchhHHHHHHHHhcCCCCCcccccCCCCCCCcCcccchhhhhHHHHHHHHhcCChHHH
Q 000483 484 CMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEF 563 (1464)
Q Consensus 484 ~~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~~L~al~~~d~~~f 563 (1464)
+.|++..|++|++... ..++++..+..|++|||+|+||...+++-+ +....+..||..+|.+|+|+++++++++
T Consensus 1841 ~~~I~~~y~~Gl~~~~--~~~~~~~~e~~Ye~awr~g~Wd~~t~~~~~----~~~~~~~~y~e~~f~~l~al~ere~e~~ 1914 (2806)
T KOG0892|consen 1841 FFHILEFYIDGLKSND--KIDEPSNEELVYEAAWRLGKWDILTLSLVD----QNKTKGDYYHESLFEALRALHEREIEGS 1914 (2806)
T ss_pred chhHHHHHhcChhhhh--hhhhhhhhhhhHHHHHhcCCcccCCcchhh----hhhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999998875 567788889999999999999986543311 1445677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHHH
Q 000483 564 YRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNT 643 (1464)
Q Consensus 564 ~~~i~~aR~~l~~~Ls~~s~ES~~~~y~~lvrLq~L~ELe~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 643 (1464)
..+++.+|+..+..++..+.|+....|+.+.+||.+.+||.+.++.+.... ......+..
T Consensus 1915 yl~le~a~~~~v~~i~~~see~~~~~y~~l~~L~~l~~l~~i~~l~~~~~~--------------------~~~~~~~~~ 1974 (2806)
T KOG0892|consen 1915 YLHLEDARNKKVLLINPNSEESSLSFYATLYDLQFLVTLEPIRCLQSTADK--------------------HQSNTDILQ 1974 (2806)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhhHhhhhhhcc--------------------hhhhhHHHH
Confidence 999999999999999999999999999999999999999999998663220 111233445
Q ss_pred HHHHHHHhhhhchhhhhhHHHHH---------------------HHHHHhcccchHHHHHHHHHHHHHHhcCChhHHHHH
Q 000483 644 EWSSILKRTQLHMNLLEPFMAFR---------------------RVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAA 702 (1464)
Q Consensus 644 ~W~~rl~~~~~~~~~~EpiL~~R---------------------~~vl~il~~~e~~~~~wl~~a~laRkag~~~~A~~a 702 (1464)
.|+.-++.....++..+-....+ ..++...++....+....+.+.+.++-.+ .+.+.
T Consensus 1975 k~~t~~q~~~~~~~~~~~~~~d~n~l~s~~~l~~~l~~~~~~~~~~~l~~~g~e~~~la~~~~~~~~~~~~~r--~~~~i 2052 (2806)
T KOG0892|consen 1975 KWKTNLQLSSQLMECLSLLIEDRNVLLSLLQLHKQLSESQLADLASLLKYYGLELCKLAESFLIADLLQNIAR--AFPVI 2052 (2806)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhchhhHHhHHH--hhHHH
Confidence 55555554444444333333333 33333333322222222222222222222 12222
Q ss_pred HHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHH-------------HHHHHH-HhhccCCCchhHHHHHHHHH
Q 000483 703 LHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAI-------------NLAKYI-SENYESNEEAPDVYRLVGKW 768 (1464)
Q Consensus 703 L~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai-------------~~Lk~l-~~~~~~~~~~a~~~~llG~w 768 (1464)
..+++.++ .++.|+..|+++....+- -.+... .++...+....++++.+|+|
T Consensus 2053 ~~~~~~~~--------------~~s~aq~~~k~~~~~~~e~iL~~~~~kne~~~~~s~~~~~~~~lk~~~~~~~a~~g~W 2118 (2806)
T KOG0892|consen 2053 MLSIKLLC--------------KFSLAQENLKHDIDKLSEAILWQRDEKNEAIISLSESLAKNNSLKEFPSDIYAVLGKW 2118 (2806)
T ss_pred HHHHHHHh--------------hhhhhhhhccchhhhhHHHHHHHHHhhhhHHHHHHhhhhhcchhhhhHHHHHHHHHHH
Confidence 33332222 233333333333322222 222211 22223334568899999999
Q ss_pred HHHhhcCChHHHHHHhhhhhhhcccccccch-hHHHHhhhhhhhhHHHhHHHHHHhHHHHhhhHHHHHHHHHHHhhHHHH
Q 000483 769 LAESRSSNSRIILENYLKPAVSFSEDQRTTD-KKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIEL 847 (1464)
Q Consensus 769 lae~~~e~~~~I~~~Y~~~a~~~~~~~~~~~-~~~~~~~~~~~~~lA~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~el 847 (1464)
++|++++++..|+++|+++|+.+++.++... ++.......+++++|+|.|.+|+.+++|+++.+|+.+++++++.++++
T Consensus 2119 laetk~ens~~i~e~yl~~a~~~ae~~d~e~~~~~~~~~s~a~~~~akysd~~~~~~~~~~~sse~et~~~l~k~~~~~~ 2198 (2806)
T KOG0892|consen 2119 LAETKSENSALISEKYLEKAVSLAEHYDNESCKALIYCQSFAQFCLAKYSDPDYQEDEERRSSSEFETLKDLQKLERSTV 2198 (2806)
T ss_pred HHHhhccchhhhHHHHHHHHHHHhhhcchhHHHHHHhHHHHHHHHHHhccCchhhhHHHHHhHHHHhhHHHHHHHHHhhh
Confidence 9999999999999999999999888763322 223344578999999999999999999999999999999999999888
Q ss_pred HHHHHHhhhcCcCccchhhHHHHHHHHHHhhhHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHhhhcC
Q 000483 848 EALIKRLKSSTKGEKTDYSIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS 927 (1464)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~e~~~l~~~~~~fl~~Al~~Yl~sL~~~~~~~~~~~~RllsLWl~~~ 927 (1464)
+.+.++-.... +.+..+.++++.+|+++++++..+|.+||..|++||++|+..|++|+...++|+|+|||+++
T Consensus 2199 ~~~~er~~q~~-------~~~~~~~~rq~~lDe~~l~~l~~~r~~fL~~Alt~Yl~cl~~~~~~D~~~i~R~cslWfsns 2271 (2806)
T KOG0892|consen 2199 EASNEREEQMR-------KNHHVRVQRQLILDEEELLALSEDRSKFLTLALTNYLNCLSESDEYDVDLIFRCCSLWFSNS 2271 (2806)
T ss_pred hhhHHHHHHHH-------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccccHHHHHHHhhhhcccc
Confidence 86654432211 13445778999999999999999999999999999999999999999989999999999999
Q ss_pred chHHHHHHHHHhhhcccccchhhhhhhhhccccCCccccccccHHHHHHHHHHHHHHhCCchhhhhHhhcccccc-chhh
Q 000483 928 SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDR-IKDK 1006 (1464)
Q Consensus 928 ~~~~v~~~~~~~l~~vPs~kfl~~ipQL~sRL~~~~~~~~~~~f~~~L~~Ll~~i~~~hP~~~l~~l~~~~~~~~-~~~~ 1006 (1464)
+..+++..|.+.+.+||+|||+||++||+|||+. .++..||+.|..|+.|++++||||++|+|+++.+..+ .++.
T Consensus 2272 ~~~evn~~mk~~i~~ipsyKFip~~yQlAaRl~~----~~~~~fq~~L~~Li~r~~~dhPyhtly~L~~L~~~~rd~e~~ 2347 (2806)
T KOG0892|consen 2272 HLKEVNNSLKHEIQTVPSYKFIPLVYQLAARLGN----SENNSFQKSLTSLIYRVGRDHPYHTLYQLLSLVNAVRDNEDE 2347 (2806)
T ss_pred chHHHHHHHHHHhccCCcchhHHHHHHHHHHhcc----ccCchHHHHHHHHHHHHhccCchHHHHHHHHHHhcCcChhhh
Confidence 9999999999999999999999999999999993 2467899999999999999999999999999998876 5666
Q ss_pred hccccchhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhh--hhccccccccc
Q 000483 1007 QRSRNSFVVDMDKKLAAENLLEELSSYHGAIIRQMKQMVDVYIKLAELETRREQDTNKRIQLPREIR--CLRQLELVPVV 1084 (1464)
Q Consensus 1007 ~~~~~~~~~~~~~~~~a~~il~~l~~~~~~~~~~~~~l~~~~~~la~~~~~~~~~~~~~~~~~~~l~--~l~~l~~~p~~ 1084 (1464)
.++|.+ ++.+|..+++.++.......++++++++.+|++|+.||+.++.......+.+.+|.... +..+++.+|+|
T Consensus 2348 n~sr~s--l~~~rki~a~l~~~~v~~~~~~~v~~v~~lc~~yI~lAnl~~~q~~t~~k~v~~p~~~~~~K~~nl~~v~~p 2425 (2806)
T KOG0892|consen 2348 NRSRGS--IDRDRKIAAELDLCDVNQGAGNMVRQLECLCEAYISLANLKTSQNDTTSKLVRLPGYQWFLKQLNLEGVPPP 2425 (2806)
T ss_pred hhcccc--cchhHHHHHHHhhhHhhccchhHHHHHHHHHHHHHHHhcCcccccchhhhhhcCccccHHHhhhhccCCCCC
Confidence 777776 78899999999999988889999999999999999999976655422223366776544 45567789999
Q ss_pred ccccCCCCCCcccCCCccccccccceEEEecCCCCceEEEEEcCCCceeeEEEecCccchhHHHHHHHHHHHHHHHHhhC
Q 000483 1085 TATVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNH 1164 (1464)
Q Consensus 1085 t~~lp~~~~~~y~~~~~~~i~~f~~~~~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~ 1164 (1464)
|+++++++++.| +++|+|.+|.++|.+++|++.||+|+|+||||++|++|+|+|+||||||++|+|+|+++|++|.++
T Consensus 2426 T~ev~v~~s~~~--~~~p~i~s~~~~v~~~~GinaPkiI~c~gSDG~~~kqLVK~gnDDLRQDAVMeQvF~~vN~lL~~~ 2503 (2806)
T KOG0892|consen 2426 TMNVKVNDSGDY--GNIPTVVSFDDTVTFAGGINAPKVITCVGSDGKTYKQLVKGGNDDLRQDAVMEQVFGQVNTFLQND 2503 (2806)
T ss_pred CCCccccCCccc--CCCceEEecccceeeecCccCCeEEEEEccCchhHHHHHhcccchHHHHHHHHHHHHHHHHHhhcc
Confidence 999999887755 568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCceeccceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchH-----hHHHHH
Q 000483 1165 RDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVK-----DKRIAF 1239 (1464)
Q Consensus 1165 ~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~-----~k~~~f 1239 (1464)
++|++|+|.||||+||||+|++|+||||.||+|+++++.... +|+|+||+|+||++.+||+.|++.+ +|+++|
T Consensus 2504 ~et~krkL~irTYKVvPls~~sGvlEwv~~tiplgeyLv~~~--~gah~ry~p~d~s~~~crk~m~~~q~k~~E~r~k~y 2581 (2806)
T KOG0892|consen 2504 RETRKRKLSIRTYKVIPLSPKAGVLEWVTNTIPLGEYLVVES--GGAHKRYRPNDWSLSKCRKLMSEVQKKSLETRLKAY 2581 (2806)
T ss_pred HHHHhcccceeEEeeeecCcccceeecccCCeehhhhhcccC--CccccccCCCCCChHHHHHHHHHHhcccHHHHHHHH
Confidence 999999999999999999999999999999999999997543 8999999999999999999998776 899999
Q ss_pred HHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeecccccccccCC
Q 000483 1240 QEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML 1319 (1464)
Q Consensus 1240 ~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~~l 1319 (1464)
.+||.+|.||||+||+++||+|.+||++|++||||+|+.|||||||||||||.+|||||..||+|||||||++||+|+.+
T Consensus 2582 ~~vc~n~~PvfryFflEkF~dP~~WFekrlaYTrsvA~sS~VGyILGLGDRH~qNILid~~taEviHIDlGiAFEQGkil 2661 (2806)
T KOG0892|consen 2582 DKVCRNIRPVFRYFFLEKFPDPADWFEKRLAYTRSVAASSMVGYILGLGDRHGQNILIDQQTAEVIHIDLGIAFEQGKIL 2661 (2806)
T ss_pred HHHHhhchHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHHHHhcccchhhhheeecccccceEEEeeeeehhcCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccccccccccccccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhHHHhhhhcccccccC
Q 000483 1320 KTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLET 1399 (1464)
Q Consensus 1320 ~~pE~VPFRLT~niv~~mG~~g~eG~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~ 1399 (1464)
|+||+|||||||+||||||++||||+||+|||.||.+||++++.+++|||+|+||||++|.++|.|+.++|++ ++..+.
T Consensus 2662 ptPE~VPFRLTRDiVdgmGItGveGvFrRccE~t~~vlR~~~~~lltileVl~yDPLf~W~msplK~~~~q~~-e~~e~~ 2740 (2806)
T KOG0892|consen 2662 PTPETVPFRLTRDIVDGMGITGVEGVFRRCCEFTLEVLRREKESLLTILEVLLYDPLFSWLMSPLKALKKQKE-EDEENF 2740 (2806)
T ss_pred CCCCcccceeehhhccccCccCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcchHHHhhcHHHHHHHHHh-hcchhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 333333
Q ss_pred CCCCCcccccc-chhHHHHHHHHHhhhcCCCCCCCcCHHHHHHHHHHHccCchhhhhhCcccccCC
Q 000483 1400 GLEGPEDEYEG-NKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1464 (1464)
Q Consensus 1400 ~~~~~~~~~~~-n~~a~~~l~rv~~KL~g~~~~~~lsv~~qV~~LI~~Atd~~NLa~m~~gW~pwl 1464 (1464)
+.++..+.... +..|.|++.|+.+||.|++.|..+||++||++||||||||.|||+|||||.||+
T Consensus 2741 n~~~~~~~~~~nd~~a~r~l~r~q~kl~g~e~g~~~sVe~qv~~LIqqA~dpsnLs~~fpGW~a~~ 2806 (2806)
T KOG0892|consen 2741 NLSGNITEDASNDRNAVRALMRAQRKLDGVEQGTMLSVEAQVQELIQQATDPSNLSLMFPGWSAFQ 2806 (2806)
T ss_pred ccccchhhhhccchHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHhcCchhhhhhcCCCcCcC
Confidence 43333333333 578999999999999999999999999999999999999999999999999996
No 2
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.3e-156 Score=1510.52 Aligned_cols=1223 Identities=26% Similarity=0.397 Sum_probs=919.9
Q ss_pred hhHHHHHHHHHHhhcCCCcccHHHHHHHHHhhhCCCCCcEEEEecCCCccccccccCCCCCCCCCccceeccCccchHHH
Q 000483 11 HDIVHAVWTLVHMCCSDDASSIRAWVSDFISRVGIGDPHCVVFHLPRDSIYMHACRPINHGSGSATEFNFHLDAGISEEL 90 (1464)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (1464)
+++.+.+=.|..=|-... +.+..+.|+||+.+|.-||.|--|+--+. ++.. -...+--+.|.-|-. .
T Consensus 1080 ~~l~ql~~~Ll~gc~k~~-~~~~~~~akcLg~lgaidp~~~~~k~q~~---------i~~~--~~~~~~~~~~~~i~~-~ 1146 (2382)
T KOG0890|consen 1080 EDLSQLLTVLLDGCQKKT-SQLEELCAKCLGELGAIDPSCHRFKEQET---------IPSI--LQVLPIECSDLPIKF-I 1146 (2382)
T ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccCchhhhhhcccc---------cchh--hhccccccCchhhhh-H
Confidence 455566666666555544 78888999999999999999877765311 1111 122233333333334 4
Q ss_pred HHHHHHHHHHhhhcCcchhhchHHHHHHHHhccccccchhhchhHHHHHHHHhhhccCcchhhHhhhhhhhhhh-hcCCC
Q 000483 91 LIAVLKILKKYLMDDSVQIVDMTSQTLRGILSTEKGQRAVMSFDSYERSLLEVHSKGVNVELVETFLLDLERKF-KANGI 169 (1464)
Q Consensus 91 ~~~il~~l~~~l~~~~~~~~~~a~~~L~~ils~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 169 (1464)
......++.-+++..+..-.+.++.+.+.++. ..|..-....+.-.--+|+.+..-.-..+ .|.+++.+.. .....
T Consensus 1147 ~~~~~~l~~~~~~~~~~~~q~~~~~~~qe~l~-~~~~~n~e~~~~~~~elW~~Fp~~~k~~~--~P~L~s~Y~sq~~~p~ 1223 (2382)
T KOG0890|consen 1147 DFAWDTLVKAFLCEPDQLKQDVVAYAIQEVLV-LGGSSNIEPLDRGMCELWERFPNEVKEEM--EPTLTSRYASQKPEPS 1223 (2382)
T ss_pred HHHHHHHHHHHhcCcChhhhhHHHHHHHHHHH-HhccccCccCCccHHHHHHHhHHHHHHHH--hhcccchhccCCCCCC
Confidence 56677888889999999999999999888887 22222111122222223332211111111 2233322220 00001
Q ss_pred CCCCCCccccCCCCHHhhHHHHHHHhhcc---C-CchhhhhcHHHHhccHhHHHHHhHHHHHHHhcCC--CcchhHHHHH
Q 000483 170 SPEKSTVWETDGKTFETWICPLTYSLIGC---C-NDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGSK--NVDVDLQKLI 243 (1464)
Q Consensus 170 ~~~~~~~w~~~~~s~~~Wi~~l~~~Ll~~---~-~~~~L~~~~~l~~~~~~~A~~LlP~~v~~i~~~~--d~~~~~~~~l 243 (1464)
.-...+++... .+|.+|+.+|+..|+.. + .++++.+|+.+...|-.++.+|+||++.+|+... +...++..++
T Consensus 1224 ~~~k~Piy~~~-lg~~eW~~~w~~~Li~ka~~s~~~~ifs~cs~~~k~D~~~t~fLlP~ill~vll~~~~e~~~~V~~ei 1302 (2382)
T KOG0890|consen 1224 VGEKKPIYKSS-LGYREWLSRWSLKLIAKAESSEASPLFSLCSIIVKDDFKVTRFLLPYILLDVLLVCEEEDRNSVTEEI 1302 (2382)
T ss_pred ccccccccccc-ccHHHHHHHHHHHHHHhccccccchHHHHHHHHHhccchhHHHHHHHHHHHHHHhccHhhHHHHHHHH
Confidence 12223333332 33999999999999954 2 3589999999999999999999999999985432 2355666666
Q ss_pred HHHHHhhhhhcc-----chhhHHHHHHHHHHHHHhHhhHhhhccCCCCCcccccccccCCC---CCCCccchhhhhhhhh
Q 000483 244 SSQVQKYIFTES-----NKLIKSIQVFLNALNELRLCHVMERSSSVPPKRESSKYVKHSGS---SAKPRSTSAKARDVVA 315 (1464)
Q Consensus 244 s~~~~~~~~~~~-----~~~~~~~q~~l~~~~~Lr~~~~~e~~~~~p~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~ 315 (1464)
-.++++...+.- ....-.+|++|..++||..|-...+. .+-. ..+-+...+| +..+..+. -.+++.
T Consensus 1303 l~vl~~~~~~t~ns~~~~~d~~~~~~VF~~ld~l~qw~r~~~q-~~~~---~k~~~sk~~R~~~~~~~~Tt~--~~~~~~ 1376 (2382)
T KOG0890|consen 1303 LSVLDEAATNTINSRGTASDRLCVQFVFYVLDYLYQWARHKKQ-ELAE---KKKIWSKVNRFWKSIMSWTTT--GEDIEG 1376 (2382)
T ss_pred HHHHhcccccccccccccccchhHHHHHHHHHHHHHHHHHHHH-HHHH---hhhhHHHhhhhheeeeccccC--CCchhh
Confidence 666776432211 12256899999999998766211111 0000 0000111122 11011110 011112
Q ss_pred hcccccccccccccccccCHHHHHHHHHHhchhhHHHHhhHhHHHHhhccccCCCCCCCccCCcchHHHHHHHHHhhCCC
Q 000483 316 TSNATMTTSWDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINE 395 (1464)
Q Consensus 316 ~~~~~~~~~~~~~~wL~Id~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdE 395 (1464)
+ ..|..-||-.++|+|..+|++|++|+||+|.+ ++ . +.. .+.......+|+.+|..|+|
T Consensus 1377 v----------~~fL~~iP~~tLa~aSfrc~~y~RalmylEs~----~~-----~-ek~-~~~~e~l~fllq~lY~~i~d 1435 (2382)
T KOG0890|consen 1377 V----------QSFLDLIPSDTLARASFRCKAYARALMYLESH----RS-----T-EKE-KETEEALYFLLQNLYGSIHD 1435 (2382)
T ss_pred h----------HHHHhhccHHHHHHHHHhhHHHHHHHHHHHHh----cc-----c-cch-hHHHHHHHHHHHHHHHhcCC
Confidence 1 22566889999999999999999999999985 11 1 111 12223445667779999999
Q ss_pred chhhhhhhc----ccchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccch
Q 000483 396 PDSLYGIIQ----SHKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKP 471 (1464)
Q Consensus 396 PD~~yGi~~----~~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~ 471 (1464)
|||+.|+.+ .+++..+|..+|..|+|.+|.+|||..++.+ |+ +..+
T Consensus 1436 pDgV~Gv~~~r~a~~sl~~qil~~e~~g~~~da~~Cye~~~q~~-----------------p~-------------~~~~ 1485 (2382)
T KOG0890|consen 1436 PDGVEGVSARRFADPSLYQQILEHEASGNWADAAACYERLIQKD-----------------PD-------------KEKH 1485 (2382)
T ss_pred cchhhhHHHHhhcCccHHHHHHHHHhhccHHHHHHHHHHhhcCC-----------------Cc-------------cccc
Confidence 999999976 4578999999999999999999999999975 33 2346
Q ss_pred hhHHHHHHHhhchhhHHHHhhhccccccCCCCCCcchhHHHHHHHHhcCCCCCcccccCCCCCCCcCcccchhhhh-HHH
Q 000483 472 YKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHEN-LHS 550 (1464)
Q Consensus 472 ~~GlmrcL~~LG~~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~~~~~~~~~~f~~~-L~~ 550 (1464)
+.|+++|+.+.|+..+.-...+|++.+.. ++-.++..+..|||||+++||.++++.. ..+...|... +++
T Consensus 1486 ~~g~l~sml~~~~l~t~i~~~dg~~~~~s--e~~~~~~s~~~eaaW~l~qwD~~e~~l~-------~~n~e~w~~~~~g~ 1556 (2382)
T KOG0890|consen 1486 HSGVLKSMLAIQHLSTEILHLDGLIINRS--EEVDELNSLGVEAAWRLSQWDLLESYLS-------DRNIEYWSVESIGK 1556 (2382)
T ss_pred hhhHHHhhhcccchhHHHhhhcchhhccC--HHHHHHHHHHHHHHhhhcchhhhhhhhh-------cccccchhHHHHHH
Confidence 78999999999999988888888876643 4556788889999999999999887642 2234455555 889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHHhHHHHHHHhhhhccCCccccccccccccCC
Q 000483 551 CLTALREGDSEEFYRKLKHSKQELVLSVACASEE-STEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSE 629 (1464)
Q Consensus 551 ~L~al~~~d~~~f~~~i~~aR~~l~~~Ls~~s~E-S~~~~y~~lvrLq~L~ELe~~~~l~~~~~~~~~~~~~~~~~~~~~ 629 (1464)
++.+..++|.-.+.+.|+.+|+.++++|++++.| ||.++|+.+++||++.||+..++...+.+++ ..+
T Consensus 1557 ~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~---------~~s-- 1625 (2382)
T KOG0890|consen 1557 LLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYD---------EDS-- 1625 (2382)
T ss_pred HHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcc---------ccc--
Confidence 9999999999999999999999999999999988 9999999999999999999999865444321 100
Q ss_pred CCCcchhhhhHHHHHHHHHHHhhhhchhhhhhHHHHHHHHHHhcc---cchHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 000483 630 PVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILS---CKDFTMQHLLESASTLRKGFRLSQAAAALHEL 706 (1464)
Q Consensus 630 ~~~~~~~~~~~l~~~W~~rl~~~~~~~~~~EpiL~~R~~vl~il~---~~e~~~~~wl~~a~laRkag~~~~A~~aL~~l 706 (1464)
.....+|..|++++++.+...|||+++||.++++.. .++.++++|+++|++||++|+++.|+++|..+
T Consensus 1626 ---------~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A 1696 (2382)
T KOG0890|consen 1626 ---------ANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNA 1696 (2382)
T ss_pred ---------cccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence 111268999999999999999999999999998743 46789999999999999999999999999886
Q ss_pred hhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCC---------Cc-----hhHHHHHHHHHHHHh
Q 000483 707 KFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESN---------EE-----APDVYRLVGKWLAES 772 (1464)
Q Consensus 707 ~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~---------~~-----~a~~~~llG~wlae~ 772 (1464)
+.. + .+ -+.+|.||++|.+|+...|+..||..+.+++.. .. ...+.+++|+|+.++
T Consensus 1697 ~e~------r-~~---~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es 1766 (2382)
T KOG0890|consen 1697 KES------R-LP---EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEES 1766 (2382)
T ss_pred hhc------c-cc---hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHh
Confidence 543 2 11 246999999999999999999999887544222 10 135678999999999
Q ss_pred hcCChHHHHHHhhhhhhhcccccccchhHHHHhhhhhhhhHHHhHHHHHHhHHHHhhhHHHHHHHHHHHhhHHHHHHHHH
Q 000483 773 RSSNSRIILENYLKPAVSFSEDQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIK 852 (1464)
Q Consensus 773 ~~e~~~~I~~~Y~~~a~~~~~~~~~~~~~~~~~~~~~~~~lA~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~ 852 (1464)
......+|++.|.+ |..+. ..+.+.||++|+|+|..+.... .
T Consensus 1767 ~n~~s~~ilk~Y~~-~~ail-----------~ewe~~hy~l~~yy~kll~~~~----~---------------------- 1808 (2382)
T KOG0890|consen 1767 GNFESKDILKYYHD-AKAIL-----------PEWEDKHYHLGKYYDKLLEDYK----S---------------------- 1808 (2382)
T ss_pred cchhHHHHHHHHHH-HHHHc-----------ccccCceeeHHHHHHHHhhhhh----c----------------------
Confidence 99999999999887 54331 2246799999999998775421 0
Q ss_pred HhhhcCcCccchhhHHHHHHHHHHhhhHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHhhhcCch---
Q 000483 853 RLKSSTKGEKTDYSIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSR--- 929 (1464)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~e~~~l~~~~~~fl~~Al~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~~--- 929 (1464)
.+.+ ++ +....|+. ++.+|.+++.+|+++.++++||++||||+++..
T Consensus 1809 -----~~~E------------~~------------g~~~~~l~-~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~ 1858 (2382)
T KOG0890|consen 1809 -----NKME------------KS------------GRVLSLLK-AIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISS 1858 (2382)
T ss_pred -----cccc------------cc------------ccHHHHHH-HHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcc
Confidence 0001 00 11234788 999999999999999999999999999997422
Q ss_pred --------------HHHHHHHHHhhhcccccchhhhhhhhhccccCCccccccccHHHHHHHHHHHHHHhCCchhhhhHh
Q 000483 930 --------------QNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLL 995 (1464)
Q Consensus 930 --------------~~v~~~~~~~l~~vPs~kfl~~ipQL~sRL~~~~~~~~~~~f~~~L~~Ll~~i~~~hP~~~l~~l~ 995 (1464)
..++..+.+++..+|+|.|+++++||+|||||+++ .+..+|.++|.++..+||||+||++.
T Consensus 1859 ~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y~f~ta~sQLlSRicH~~~-----dV~~vl~~II~~l~~~YPqq~lW~~~ 1933 (2382)
T KOG0890|consen 1859 VEKAPRGEIVSKNLKLINSLIEEALEHLPTYQFYTAYSQLLSRICHPNQ-----DVARVLKHIIAKLVLAYPQQTLWQSA 1933 (2382)
T ss_pred cccCChhhhhhhhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 13566677899999999999999999999999863 34479999999999999999999999
Q ss_pred hccccccchhhhccccchhhhhhHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhh
Q 000483 996 ALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELS---SYHGAIIRQMKQMVDVYIKLAELETRREQDTNKRIQLPREI 1072 (1464)
Q Consensus 996 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~il~~l~---~~~~~~~~~~~~l~~~~~~la~~~~~~~~~~~~~~~~~~~l 1072 (1464)
++.+++..+ |....+.||.... .....++.+...+.+.+.+||+.+... +.+..++...+
T Consensus 1934 a~~kS~~p~--------------R~~R~keIL~k~~~~~~~~~~l~~da~~lTe~L~~lcn~~v~~---ss~~~sl~t~F 1996 (2382)
T KOG0890|consen 1934 ALSKSNVPS--------------RVERCKEILTKSRRQKPDYKKLLSDAYDLTEKLTNLCNKKVNS---SSKVLSLKTDF 1996 (2382)
T ss_pred HHHhcccHH--------------HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhcCCCCc---ccccccHHHHH
Confidence 998886432 2234455666332 335567878888999999998855433 44566777766
Q ss_pred hhhccc-----cccccc---ccccCCCCC---Ccc----cCCCccccccccceEEEecCCCCceEEEEEcCCCceeeEEE
Q 000483 1073 RCLRQL-----ELVPVV---TATVPIDCT---CQY----NEGSFPYFKGLAESVMVMNGINAPKVVECFGSDGHKYRQLA 1137 (1464)
Q Consensus 1073 ~~l~~l-----~~~p~~---t~~lp~~~~---~~y----~~~~~~~i~~f~~~~~v~~s~~~Pk~i~~~gsdG~~y~~L~ 1137 (1464)
+++... ..+|.- ..++|..+. ..+ .++..|+|.+|.+.|+|++|+|+||+|+++||||+.|.+||
T Consensus 1997 ~kl~~~~~~s~iliP~~~~M~ptlP~~~~~~~~h~~~~~f~~~~~~IsgF~d~V~Il~SLqKPKkI~l~GsDGk~Y~~lC 2076 (2382)
T KOG0890|consen 1997 RKLVMNRRFSDILIPLQSIMDPTLPLIDNNHATHSPFPPFQSHLPYISGFSDEVKILNSLQKPKKIKLRGSDGKIYPFLC 2076 (2382)
T ss_pred HHhccccChhhhhhhHhhhcccccccccCcccccCCCCCCCCcchhhhcchHHHHHHHhccCCeEEEEEcCCCCEeEEEe
Confidence 644322 134432 223443322 111 11234689999999999999999999999999999999999
Q ss_pred ecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCcCC
Q 000483 1138 KSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGI 1217 (1464)
Q Consensus 1138 K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~ 1217 (1464)
|+ +||||+|+|+|+|..+||.+|+||.|+|||+|+||||+||||+.+|||||||||+.++++|+.+.+...|. +.+
T Consensus 2077 Kp-KDDLRKD~RlMeFn~lin~lL~KD~eSRrR~L~IRTYaViPLneeCGiIEWv~nt~slR~IL~klY~~rg~---~~~ 2152 (2382)
T KOG0890|consen 2077 KP-KDDLRKDARLMEFNELINKLLRKDQESRRRKLYIRTYAVIPLNEECGIIEWVPNTASLREILDKLYMTRGK---WMI 2152 (2382)
T ss_pred Cc-hhhhhhhhHHHHHHHHHHHHHhhCHHHhhhcceeeEEEEeecCCccceEEecCCcchHHHHHHHHHHhccc---cch
Confidence 97 79999999999999999999999999999999999999999999999999999999999999887733322 211
Q ss_pred CcchhHHHHhhh----cchHhHHHHHH-HHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhcccchhhheeccCCCCC
Q 000483 1218 GDWSFLKCREHM----SNVKDKRIAFQ-EVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHA 1292 (1464)
Q Consensus 1218 ~~~~~~~~r~~~----~~~~~k~~~f~-~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyilgLGDRH~ 1292 (1464)
. .+++... ....++.++|. ++++++||||++||.++||+|..||..|.+|+||+||||||||||||||||+
T Consensus 2153 ~----~~l~~~~~~~~~~~~~~~~~F~~~~lpkfPPVFheWFl~~FPeP~sW~~SR~~Y~rTtAVMSmVGyIlGLGDRHg 2228 (2382)
T KOG0890|consen 2153 K----KQLRSVHLKKQMAKEEKGKVFREKLLPKFPPVFHEWFLESFPEPGSWFASRNNYARTTAVMSMVGYILGLGDRHG 2228 (2382)
T ss_pred h----hHHHHhcCcHhhcccchhhhhHHhhcccCCcHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 1 1333222 12346778885 6799999999999999999999999999999999999999999999999999
Q ss_pred CeeEEecCCCeEEEeecccccccccCCCCCCCCCcccccccccccccccccchhHHHHHHHHHHHhcChHHHHHHHHHHc
Q 000483 1293 MNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFI 1372 (1464)
Q Consensus 1293 ~NILld~~tG~v~hIDfg~~f~~g~~l~~pE~VPFRLT~niv~~mG~~g~eG~F~~~~~~t~~~Lr~~~~~l~~iL~~f~ 1372 (1464)
+|||||..||++||+||+|.|++|..|++||.||||||+||+|||||+|+||.||++||.||++||+|++.||+||+.|+
T Consensus 2229 ENILFDs~TGdcVHVDFnCLFnKGetlevPEiVPFRLT~NMidamGp~G~EG~Frk~cEiTLrLlR~n~e~LMSiL~tF~ 2308 (2382)
T KOG0890|consen 2229 ENILFDSTTGDCVHVDFNCLFNKGETLEVPELVPFRLTQNMIDAMGPLGLEGSFRKVCEITLRLLRKNRETLMSILETFV 2308 (2382)
T ss_pred cceeeecCCCcEEEEeecccccCCcccCCCCccceecchhHHhhcCCcccchhHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccChhHHHhhhhcccccccCCCCCCccccccchhHHHHHHHHHhhhcCCC--CCCCcCHHHHHHHHHHHccCc
Q 000483 1373 HDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYE--GGEMRSVHGQVQQLIQDAIDP 1450 (1464)
Q Consensus 1373 ~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~rv~~KL~g~~--~~~~lsv~~qV~~LI~~Atd~ 1450 (1464)
||||+.|.....+.. ....|.+ .+++.+|++|++|.. +|.++||+|||+.||++|||+
T Consensus 2309 ~DPlvew~~~~k~~s-------------------~~~i~e~-~~~i~~i~~rlqG~~~~~glPLSveGq~~~LI~eATse 2368 (2382)
T KOG0890|consen 2309 YDPLVEWNRPSKGRS-------------------PKKINED-RLVIGRIRGRLQGAMKVDGLPLSVEGQASSLIEEATSE 2368 (2382)
T ss_pred hCchhhccCcccCCC-------------------cCcccch-HHHHhHHHHHHhccCcCCCCccchhhHHHHHHHHhcCH
Confidence 999999975432100 0011212 568999999999954 678899999999999999999
Q ss_pred hhhhhhCcccccCC
Q 000483 1451 ERFCLMFPGWGAWL 1464 (1464)
Q Consensus 1451 ~NLa~m~~gW~pwl 1464 (1464)
+|||+||.||+|||
T Consensus 2369 enL~~MYIGW~p~l 2382 (2382)
T KOG0890|consen 2369 ENLSEMYIGWMPFL 2382 (2382)
T ss_pred HHHHHHHhhhhccC
Confidence 99999999999997
No 3
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=100.00 E-value=2.2e-96 Score=983.12 Aligned_cols=1087 Identities=24% Similarity=0.370 Sum_probs=787.9
Q ss_pred CHHhhHHHHHHHhhccCCchhhhhcHHHHhccHhHHHHHhHHHHHHHhcCCCcchhHHHHHHHHHHhhhhhccchhhHHH
Q 000483 183 TFETWICPLTYSLIGCCNDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGSKNVDVDLQKLISSQVQKYIFTESNKLIKSI 262 (1464)
Q Consensus 183 s~~~Wi~~l~~~Ll~~~~~~~L~~~~~l~~~~~~~A~~LlP~~v~~i~~~~d~~~~~~~~ls~~~~~~~~~~~~~~~~~~ 262 (1464)
.|.+|++.....+++.++++++|+|..+...+.++|+.+||+++.+||.+.+ .+.+..+...+...... +..++.+
T Consensus 1129 ~~~e~~~~~~i~~lk~~~s~~lr~~~~l~~~~~~l~r~~f~~~~~s~w~e~~--~~~q~~l~~~le~~~~~--~~i~e~~ 1204 (2341)
T KOG0891|consen 1129 DWQEWIRRLSIELLKESPSHALRACSSLAQAYYPLARDLFNAAFVSCWTELD--SSYQNDLIKSLEIALSS--PDIPEII 1204 (2341)
T ss_pred cccchhhhhhHHHHHhcchhhHHHHHhhhhhccccchhhhhHHHHHHhhhcc--cchhhhhhhhHHHHHhC--CccHHHH
Confidence 4999999999999999999999999999999999999999999999999874 55666666666553322 2223888
Q ss_pred HHHHHHHHHHhHhhHhhhccCCCCCcccccccccCCCCCCCccchhhhhhhhhhcccccccccccccccccCHHHHHHHH
Q 000483 263 QVFLNALNELRLCHVMERSSSVPPKRESSKYVKHSGSSAKPRSTSAKARDVVATSNATMTTSWDKVYWLSVDYLRVAKSA 342 (1464)
Q Consensus 263 q~~l~~~~~Lr~~~~~e~~~~~p~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~wL~Id~~~lA~aA 342 (1464)
|+++|+ +|||+|. + + .++|+..+++..|
T Consensus 1205 q~l~nl---------~ef~eh~------~-----------------------------------~--plpi~~~~L~~~~ 1232 (2341)
T KOG0891|consen 1205 QTLLNL---------AEFMEHD------D-----------------------------------K--PLPIPIKTLGLYA 1232 (2341)
T ss_pred HhhhhH---------HHHHHhc------c-----------------------------------c--CCCcchhhHHHHH
Confidence 888886 5566441 1 1 3677777999999
Q ss_pred HHhchhhHHHHhhHhHHHHhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhcc----cchhhHHHHHHhh
Q 000483 343 VICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS----HKLSSQIVTLEHE 418 (1464)
Q Consensus 343 ~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPD~~yGi~~~----~~l~~~i~~yE~e 418 (1464)
..|++|++||+|.|+++... ...++++.|+.|.+.++.+|.+-|+... ..+..+..|||+.
T Consensus 1233 ~~c~a~~~~l~y~el~~~~~---------------~~~~~i~sl~~~~~~~q~~~~a~~i~~~a~~~~~l~~~e~w~e~l 1297 (2341)
T KOG0891|consen 1233 EKCRAYAKALHYKELEFLKE---------------PSPDTIESLISINNKLQQREAAIGVLKYAQQHSELQLKETWYEKL 1297 (2341)
T ss_pred HHHHHHHHHHHHHHHHhhhc---------------cchhHHHHHHhhcccchhHHHhccHHHHHHhHHHHHHhhhccccc
Confidence 99999999999999976442 2367899999999999999999999752 2467788999999
Q ss_pred CCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhchhhHHHHhhhccccc
Q 000483 419 GNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSW 498 (1464)
Q Consensus 419 g~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~~~~gl~~~ 498 (1464)
.+|++||.+|+.....+.. ..+...|.|+|+..+|.|+-+....+..|..
T Consensus 1298 ~~~~d~l~a~~~~~~~~~~------------------------------~~e~~~g~~~~~~~lg~w~~l~~~~~~~~~~ 1347 (2341)
T KOG0891|consen 1298 HRWEDALAAYELREKAGDS------------------------------SFELRMGKMRCLEALGDWDELSQLASEKWEV 1347 (2341)
T ss_pred ccchhHhhhhhcccchhhh------------------------------hHHHHhhhhhhhhhhhhHHHHhhhhcccCCC
Confidence 9999999999987653311 1234579999999999999987544443333
Q ss_pred cCCCCCCcchhHHHHHHHHhcCCCCCcccccCCCCCCCcCcccchhhhhHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh
Q 000483 499 KGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLSV 578 (1464)
Q Consensus 499 ~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~~L~al~~~d~~~f~~~i~~aR~~l~~~L 578 (1464)
.+ .+.+..+++.+..+||.+++|+.+.++ .+.++..+++..+| ++..++|.+++..+...+..+|+.++.++
T Consensus 1348 ~~-~~~~~~~ap~a~~~~~~~~~w~~~~~~--~s~~~~~~~~~~~~-----~a~~a~~~~~~~~~~~~~~~~~dll~~e~ 1419 (2341)
T KOG0891|consen 1348 AG-QEAKHKMAPLAAAAAWGLGQWDTMAEY--VSVMSEDSQDKAFF-----RAILALHRDEFEKAVKLIERARDLLDTEL 1419 (2341)
T ss_pred cc-hhHHHHHHHHHHHhhhccccchhhhhh--cccccccchhhHHH-----HHHHhhhhhHHHHHHHhcccHHHHHHHHH
Confidence 22 234567889999999999999987654 44454444555444 55669999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHHHHHHHHHHhhhhchhh
Q 000483 579 ACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNL 658 (1464)
Q Consensus 579 s~~s~ES~~~~y~~lvrLq~L~ELe~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~~~~~~~~ 658 (1464)
+++..|||+++|..+++.||+.|+|++++. +..+ ++...+...|.+++.+++...+.
T Consensus 1420 ~~~~~Es~sr~y~~~~~~~~~~e~E~~~~~--k~~~---------------------~r~~~i~~~~~~~l~~~q~~~~~ 1476 (2341)
T KOG0891|consen 1420 TAMAGESYNRAYGVMVRAQMLAELEEIIEY--KKLP---------------------ERRPIIAKTWWKRLQGCQKNVDD 1476 (2341)
T ss_pred HHHHhhHHhhchhhhhhhhhhhhHHHHHHh--hccc---------------------chhHHHHHHHHhhHHHhhccHHH
Confidence 999999999999999999999999999983 3221 12456788999999999999999
Q ss_pred hhhHHHHHHHHHHhcccchHHHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCC-----CCCCchhhhhHHHHHHHHHH
Q 000483 659 LEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGP-----GDQCSTVYWLGRLEEAKLLR 733 (1464)
Q Consensus 659 ~EpiL~~R~~vl~il~~~e~~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~-----~~q~~~~~~~~~lE~Ak~lW 733 (1464)
|+.++.+|..++.+ + +...+|++++.+|||+|+..++.+.+..+..-.... .-...|.+ .+...+++|
T Consensus 1477 wq~~lr~~~~v~~p---~-~~~~~~ik~a~~cr~s~~~~l~~~~l~~~L~~~~~~~~~~~~~~~~P~~---v~a~~~~~~ 1549 (2341)
T KOG0891|consen 1477 WQRILRVRSLVLSP---Q-EDMEMWIKFASLCRKSGRLALARKLLNELLERDPSSDLPLPLKARLPQV---VYAYLKYLW 1549 (2341)
T ss_pred HHHHHHHhhhccCC---C-cchHHHHHHHHHhHHhHHHHHHHHHHHHHHhcCccccccccccccChHH---HHHHHhHHH
Confidence 99999999888553 4 478999999999999999999999987764321110 11112323 366799999
Q ss_pred HcCChHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHhhcCChHHHHHHhhhhhhhcccccccchhHHHHhhhhhhhhH
Q 000483 734 AQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSEDQRTTDKKSIERQCQTHFHL 813 (1464)
Q Consensus 734 ~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~~~llG~wlae~~~e~~~~I~~~Y~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 813 (1464)
+.+....|++.++...... .++.++.. +... .+... .+
T Consensus 1550 ~~~~~~~~~~~~~~~~s~l----------------~~d~~~~~-~~~~----------~~~~~----~~----------- 1587 (2341)
T KOG0891|consen 1550 ATDSKDEAINTLQEFTSTL----------------NSDLGSDP-DELL----------SEPTE----AE----------- 1587 (2341)
T ss_pred hhccchHHHHHhHHHHHHH----------------HhhcCCCc-hhhh----------hcccc----hh-----------
Confidence 9999999999886544321 11111111 1100 00000 00
Q ss_pred HHhHHHHHHhHHHHhhhHHHHHHHHHHHhhHHHHHHHHHHhhhcCcCccchhhHHHHHHHHHHhhhHHHHHH--------
Q 000483 814 AHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQKQLAMDREEAQK-------- 885 (1464)
Q Consensus 814 A~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~e~~~-------- 885 (1464)
..+....+... +++.++|+..... .....-+..++..+..++..++.||+++-.-+...+.- ...++.
T Consensus 1588 ~~~~~~l~a~~--~l~~~~w~~~~~~-s~~~~~~~~~L~~y~~at~~d~~~ykawh~~a~a~f~~-V~~l~~~~~~~~~~ 1663 (2341)
T KOG0891|consen 1588 KQEYTKLLARC--FLKLGEWQQLLQD-SWRTSALDGILQSYLLATQFDRGWYKAWHQWALANFEV-VQMLKQVTKAKYAP 1663 (2341)
T ss_pred hhHHHHHHHHH--HHhhccccccccC-CccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-HHhhhhhhccccCC
Confidence 00000011110 1233444433221 12222333344455556667777777751100000000 000000
Q ss_pred ---------------hHHhHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHhhhcCchHHHHHHHHHhhhcccccchhh
Q 000483 886 ---------------LLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQSYKFIP 950 (1464)
Q Consensus 886 ---------------l~~~~~~fl~~Al~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~~~~v~~~~~~~l~~vPs~kfl~ 950 (1464)
-..-...|+.+|+++|++++..+.....+++.|+++|||.++++++|..++...+..+|.+.|+.
T Consensus 1664 ~~~~~~~~~~~~~~~~~~~~~~~~v~avk~ff~~~~~~~~s~lqdtlrl~~L~f~~g~~~~v~q~i~~~~~~~~i~~wl~ 1743 (2341)
T KOG0891|consen 1664 GANIWNMPDYLGSNSDLMLIHHYAVPAVKGFFRSISLSPGSSLQDTLRLLTLWFDFGDNKDVYQALLEGINLIPIDTWLE 1743 (2341)
T ss_pred ccccccchhhccCcCCccchHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCCCchHHHHHHhhhhHhhHHHHHH
Confidence 00112359999999999999999888889999999999999999999999999999999999999
Q ss_pred hhhhhhccccCCccccccccHHHHHHHHHHHHHHhCCchhhhhHhhccccccch---------hhhccccchhhhhhHHH
Q 000483 951 LVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRIK---------DKQRSRNSFVVDMDKKL 1021 (1464)
Q Consensus 951 ~ipQL~sRL~~~~~~~~~~~f~~~L~~Ll~~i~~~hP~~~l~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 1021 (1464)
++|||++||..+. ....+.+..++..+++.||+++.|++.+..++.... ++.+.+.+.++.++..+
T Consensus 1744 ~ipqLiari~~~~-----~~~~~l~~~ll~dig~~~pqA~iy~ltvas~s~~~~r~~~a~~ile~m~~~~~~Lv~~a~lv 1818 (2341)
T KOG0891|consen 1744 VIPQLIARIHTPD-----QLVVQLVLQLLSDIGRAHPQALVYPLTVASKSKSVARQKAALSILEKMREHSPTLVRQARLV 1818 (2341)
T ss_pred hHHHHHHHHhccc-----hHHHHHHHHHHHHhhhcchhhhhHHHHHHHhcchHHHHHhHHHHHHHHHHhhHhhhhhhhhh
Confidence 9999999999763 456789999999999999999999999876664321 12233344444444444
Q ss_pred HHHHHHH-------------HHH-hHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------------------
Q 000483 1022 AAENLLE-------------ELS-SYHGAIIRQMKQMVDVYIKLAELETRR----------------------------- 1058 (1464)
Q Consensus 1022 ~a~~il~-------------~l~-~~~~~~~~~~~~l~~~~~~la~~~~~~----------------------------- 1058 (1464)
.-+.|.. +.+ .+++ ..+++.+.+....+-++..+.
T Consensus 1819 s~elir~a~lwhe~w~e~ldeAsr~yf~--~~nv~~m~~~l~p~~~~l~~~~~t~~e~sFqqt~g~dl~ea~~~~~~~~~ 1896 (2341)
T KOG0891|consen 1819 SEELIRVAILWHEQWHEGLEEASRLYFS--DHNVEGMFAVLRPLHEMLERGPQTLKEHSFQQTYGRDLKEAYEWVQKFEQ 1896 (2341)
T ss_pred HHHHHHHHhhhHhhhhhccHHHHHHHhh--HhhHHHHHHHHhHHHHHhhcCCcchhhhhhHHhhChhhHHHHHHHHHHHh
Confidence 4433311 111 1111 222222222222111111000
Q ss_pred ---ccccccccc--------chhhhhhhccccccccc-----ccccCCCCCCcccCCC-ccccccccceEEEecCCCCce
Q 000483 1059 ---EQDTNKRIQ--------LPREIRCLRQLELVPVV-----TATVPIDCTCQYNEGS-FPYFKGLAESVMVMNGINAPK 1121 (1464)
Q Consensus 1059 ---~~~~~~~~~--------~~~~l~~l~~l~~~p~~-----t~~lp~~~~~~y~~~~-~~~i~~f~~~~~v~~s~~~Pk 1121 (1464)
..+.++.|. +.+.+..++.++...+. ...+++..++.|.++. ++.|.+|.+++.|+.|+++|+
T Consensus 1897 ~~~~~dL~qawdly~~vf~ki~~ql~~l~sl~l~~vSp~L~~~~dlel~vPgty~~~~~~i~i~~f~~~~~vitskqRpr 1976 (2341)
T KOG0891|consen 1897 SGDVKDLNQAWDIYYNVFKKIRKQLPQLTSLDLQYVSPKLLSAKDLELAVPGTYDPGKPIIRIQSFEPKFNVITSKQRPR 1976 (2341)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccccccccceeccCCccCCCceEEehhhccHHHHHHHHHhhhH
Confidence 001112222 12233444455444432 2345666677887662 347999999999999999999
Q ss_pred EEEEEcCCCceeeEEEecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceeEEcCCCCchHHH
Q 000483 1122 VVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDY 1201 (1464)
Q Consensus 1122 ~i~~~gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~i 1201 (1464)
++.|+|+||+.|+|++| |++|+|||+|+||+|++||.++..+.+|.||+|.|++|.|+|++++.|+|+||||+.+++..
T Consensus 1977 kl~i~gs~g~d~~~~lk-ghed~rQD~RvmQLf~Lvn~ll~~d~~~~rr~L~iq~Y~~i~ls~~sgL~gWv~~~dtlh~L 2055 (2341)
T KOG0891|consen 1977 KLVIRGSDGKDYQYLLK-GHEDLRQDERVMQLFGLVNTLLANDSETFRRNLTIQRYSVIPLSPDSGLIGWVPNCDTLHTL 2055 (2341)
T ss_pred HHhhcccchhhHHHHhh-chhhhhhHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhcCCCCCCceeeeecccccHHHH
Confidence 99999999999999999 78999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhccCCCCCCCcCCCcchhHHHHhh--hcchHhHHHHHHHHHhhhhh-hHHHHHHHHcCCchHHHHHHHHHHHhhccc
Q 000483 1202 LIGSTRNGGAHGRYGIGDWSFLKCREH--MSNVKDKRIAFQEVCENFRP-VLHYFFLERFLQPAYWFEKRLAYTRSVAAS 1278 (1464)
Q Consensus 1202 l~~~~~~~~~~~r~~~~~~~~~~~r~~--~~~~~~k~~~f~~i~~~~~p-vl~~~f~~~f~~~~~w~~~R~~ft~S~A~~ 1278 (1464)
+........ ..-........+..-. --...+|...|......... .+++-++-+.++++.|+.+|.+||+|.|+|
T Consensus 2056 ~r~~r~~k~--i~l~~eh~~~~~~~l~~~~ltl~qk~~vfe~~~~~t~G~dl~~~lwlkS~ssEaw~~rrt~yt~S~A~m 2133 (2341)
T KOG0891|consen 2056 IREYREKKK--IPLNIEHRVMLQMAPDYDHLTLMQKVEVFEYALSNTQGDDLYKVLWLKSPSSEAWLDRRTNYTRSLAVM 2133 (2341)
T ss_pred HHHHHHhhc--cCCcchHHHHHhcCccccchhhhhHHhHhHHHhhcCcHHHHHHHHHHhCCChhHHHHHhhhhHHHHHHH
Confidence 754322110 0000111111110000 00123577788776666665 677888899999999999999999999999
Q ss_pred chhhheeccCCCCCCeeEEecCCCeEEEeecccccccccC-CCCCCCCCcccccccccccccccccchhHHHHHHHHHHH
Q 000483 1279 SMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVM 1357 (1464)
Q Consensus 1279 S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~~-l~~pE~VPFRLT~niv~~mG~~g~eG~F~~~~~~t~~~L 1357 (1464)
||+|||+|+|||||+|.|+|+.||.++|||||.||+..+. .++||.+||||||+++++|.++|.+|.|+.+|+.+++++
T Consensus 2134 smvgyilGlGdrhpsNlmldr~tgkvihidfgdcfevA~~rek~pe~~pfRlTrmli~amev~gl~g~~~~t~e~v~~~l 2213 (2341)
T KOG0891|consen 2134 SMVGYILGLGDRHPSNLMLDRLTGKVIHIDFGDCFEVAMLREKFPEKVPFRLTRMLINAMEVTGIEGTYRITCEHVMRVL 2213 (2341)
T ss_pred HHHHHHhhccccchhhhhhhhcccceEEechHHHHHHHHhhccccccccHHHHHHHHHhHHHHhhhhHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999986 569999999999999999999999999999999999999
Q ss_pred hcChHHHHHHHHHHccCCCcccccChhHHHhhhhccc-------------------ccccCCCCCCccccccchhHHHHH
Q 000483 1358 RTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMD-------------------DDLETGLEGPEDEYEGNKDAERAL 1418 (1464)
Q Consensus 1358 r~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~n~~a~~~l 1418 (1464)
|.+++.++.++++|+|||+++|........+...... .+.....+........|..+.-++
T Consensus 2214 r~~~~sl~a~leafvydplinwr~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~~~~~~~~~e~~n~~~~~vl 2293 (2341)
T KOG0891|consen 2214 RTNKESLMAVLEAFVYDPLINWRLDDVLSPGKDEEEVGEKDPLKNRKELGLPRAMAGEEIAVLESSVKPEALNARAIQVL 2293 (2341)
T ss_pred cCChHHHHHHHHhhhcccchhhhcccccchhhhhcccCCCCcccchhhhccHHhhhccccccccccccccccChhhHHHH
Confidence 9999999999999999999999986332221111000 000000110111112255566789
Q ss_pred HHHHhhhcCCC--CCCCcCHHHHHHHHHHHccCchhhhhhCcccccCC
Q 000483 1419 IRVKQKLDGYE--GGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1464 (1464)
Q Consensus 1419 ~rv~~KL~g~~--~~~~lsv~~qV~~LI~~Atd~~NLa~m~~gW~pwl 1464 (1464)
.|+..|+.|.+ ....++|..||..||+|||+|+|||+.|+||||+|
T Consensus 2294 ~~~~~kltg~~~~~~~~l~v~~qv~~l~~qats~e~lc~~yigwcpfw 2341 (2341)
T KOG0891|consen 2294 KRISDKLTGRDFVHEEPLDVPEQVEKLIQQATSPENLCQCYIGWCPFW 2341 (2341)
T ss_pred HhcccccceeeccCcccCcHHHHHHHHHHhhcChHhhhcccccCCCCC
Confidence 99999999954 45679999999999999999999999999999953
No 4
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=100.00 E-value=3.5e-76 Score=812.45 Aligned_cols=1085 Identities=21% Similarity=0.244 Sum_probs=669.3
Q ss_pred CHHhhHHHHHHHhhccCCchhhhhcHHHHhccHhHHHHHhHHHHHHHhcCCCcchhHHHHHHHHHHhhhhhccchhhHHH
Q 000483 183 TFETWICPLTYSLIGCCNDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGSKNVDVDLQKLISSQVQKYIFTESNKLIKSI 262 (1464)
Q Consensus 183 s~~~Wi~~l~~~Ll~~~~~~~L~~~~~l~~~~~~~A~~LlP~~v~~i~~~~d~~~~~~~~ls~~~~~~~~~~~~~~~~~~ 262 (1464)
.|.+|+.++.++++.+.+...++.|.-++...-..+..++..++..+|.+.-. ...+.+-.-+.. ....+..++...
T Consensus 921 ~~q~~~~~~~~~~~~~~~~~~l~~~s~l~~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~~s~~~-~~~~~~~~~~~~ 997 (2105)
T COG5032 921 FWQEELDNLLVALLKELPFMALRDCSILSDLYFMLGRELWNSVSFECWLELMN--SYKRLLIKSLKS-KLHLPTIPILIL 997 (2105)
T ss_pred HHHHHHHHHHHHHHhccchHHhhhcchhHHHHhhccHHHHhHHhHHHHHHHhh--hhhHHHHHhHHH-HhhcCCCCchhh
Confidence 39999999999999888999999999999989999999999999999977521 111111111111 122223334444
Q ss_pred HHHHHHHHHHhHhhHhhhccCCCCCcccccccccCCCCCCCccchhhhhhhhhhcccccccccccccccccCHHHHHHHH
Q 000483 263 QVFLNALNELRLCHVMERSSSVPPKRESSKYVKHSGSSAKPRSTSAKARDVVATSNATMTTSWDKVYWLSVDYLRVAKSA 342 (1464)
Q Consensus 263 q~~l~~~~~Lr~~~~~e~~~~~p~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~wL~Id~~~lA~aA 342 (1464)
+..+...+ .+|++. ...+++.++...+...+
T Consensus 998 ~~~~~~~n------~~e~~~-------------------------------------------~~~~~~~~~~~~~~~~~ 1028 (2105)
T COG5032 998 QMLLDSKN------LTEFTE-------------------------------------------HQLKNLPLPSLSIGFYE 1028 (2105)
T ss_pred hhhhhhcc------hhhhhh-------------------------------------------hhhheecchhhhhhHHH
Confidence 44332211 133332 12346777777777999
Q ss_pred HHhchhhHHHHhhHhHHHHhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhccc----chhhHHHHHHhh
Q 000483 343 VICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH----KLSSQIVTLEHE 418 (1464)
Q Consensus 343 ~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPD~~yGi~~~~----~l~~~i~~yE~e 418 (1464)
..|+.++++++|.|.+.-+. . ....++.++++..++.+.|..-|+.... .....-.+++..
T Consensus 1029 ~~~~~~~~~~~~~~~~~~~~---------~------~~~si~t~ls~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 1093 (2105)
T COG5032 1029 SLCSFLAKLLHDEELYFFPL---------L------FVSSLETLLSVNYHINQLDLRPNILKHFGSFVRFQLKPHLVKYL 1093 (2105)
T ss_pred HHHHHHHHHhHHHHHHhccc---------c------hHHHHHHHHhhhhhhhhhhhccCcchhhhhhhHHhhhHHHHHHH
Confidence 99999999999999843221 0 1345788999999999999999954322 123336899999
Q ss_pred CCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhchhhHHHHhhhccccc
Q 000483 419 GNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSW 498 (1464)
Q Consensus 419 g~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~~~~gl~~~ 498 (1464)
++|.+++..|-....... + ......|.+++....|.|.......+--+-
T Consensus 1094 ~~~~~~l~~~~~~~~~~~--------~----------------------~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~- 1142 (2105)
T COG5032 1094 QRWYEALNRYFELLSKGD--------R----------------------LFAISFTKLRNVDALGKLELYSSLAEIDMF- 1142 (2105)
T ss_pred HHHHHHHHHHHHHHhhcc--------c----------------------hhHHHHhhhhhhhHHHHHHHHHHHHHHhhh-
Confidence 999999999988776420 0 111236888999999988775443332111
Q ss_pred cCCCCCCcchhHHHHHHHHhcCCCCCcccccCCCCCCCcCcccchhhhhHHHHHHHHhcCChHHHHHHH-HHHHHHHHHH
Q 000483 499 KGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKL-KHSKQELVLS 577 (1464)
Q Consensus 499 ~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~~L~al~~~d~~~f~~~i-~~aR~~l~~~ 577 (1464)
.+.+..+.-..++.+.++|.+|.|+....+- +.+.....+..++.. ......+.++.+.+.... ..++..++.+
T Consensus 1143 ~~~~~~r~~~~~~~~~~~~~~~~~~~~q~~~--e~~~~k~~~~~~~~s---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 1217 (2105)
T COG5032 1143 LSLHRRRKLLETLVATAYEQVGEWYKAQQLY--EVAQRKARSKEFPFS---LQYLYWHINDIDCADKLQSVLAELSLVTG 1217 (2105)
T ss_pred hccCcchhhhhHHHHHHHHHHHhHHHHHHHH--HHHhhhcccccCchh---hHHHHHcccchhhHhhhhhhhhhcccccc
Confidence 1112223334567788999999999754331 112122233333322 245577888988888888 6677788888
Q ss_pred hhhh-hhhhHHHHHHHHHHHHHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHHHHHHHHHHh---hh
Q 000483 578 VACA-SEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKR---TQ 653 (1464)
Q Consensus 578 Ls~~-s~ES~~~~y~~lvrLq~L~ELe~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~---~~ 653 (1464)
+... ..+++.+++-...+.+...|+++++...++...+ . . .-.-...+...|+.++.+ ++
T Consensus 1218 ~~~i~~~~~w~~a~~~~~~~~~~~~~~e~~~~~~~~~~~-------~------~---~~~~~~~~~~~~~~~l~~~~~~~ 1281 (2105)
T COG5032 1218 ISELLLEESWRRALFSNIKDSLESELEEIIDGMYKSNED-------F------G---ALMLLSLSAELWDKILEGRSSCS 1281 (2105)
T ss_pred hhhhccchhHHHHHhhhHHhhhhhhhhHHhhhhhhcccc-------h------H---HHHHHHHHHhccchhhcchhhhh
Confidence 8887 6789999998889999999999998854443311 0 0 000123355688888887 66
Q ss_pred hchhhhhhHHHHHHHHHHhcccchHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhhcC-CC---C---CCCchhhhhHH
Q 000483 654 LHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGF-RLSQAAAALHELKFLYT-GP---G---DQCSTVYWLGR 725 (1464)
Q Consensus 654 ~~~~~~EpiL~~R~~vl~il~~~e~~~~~wl~~a~laRkag-~~~~A~~aL~~l~~l~~-~~---~---~q~~~~~~~~~ 725 (1464)
..+..|-.....+..+. .. .....+|++++..|++.+ +.......+..+..-.. .. . ...++ .+ .
T Consensus 1282 ~~i~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~--~ 1354 (2105)
T COG5032 1282 KSIKLSLNIWLDLSIVV---SP-KDEPELFIKFVELCEASSIRSKLLEKNIQELLEKLEEIKSPLGTLRDRLPP-PW--A 1354 (2105)
T ss_pred HHHHHHHHHHHHHhhhc---CH-hhhhhHHHHHHHHHhhhhHHHHhcchhHHHHHhccccccchhhhhhhcCCC-Cc--h
Confidence 66665554444332221 12 223379999999999999 55555555544421110 00 0 00001 11 1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHhhcCChHHHHHHhhhhhhhcccccccchhHHHHh
Q 000483 726 LEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSEDQRTTDKKSIER 805 (1464)
Q Consensus 726 lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~~~llG~wlae~~~e~~~~I~~~Y~~~a~~~~~~~~~~~~~~~~~ 805 (1464)
+..-+..|+......+....+.+....... +..........-......+.. +.-.++......+-.
T Consensus 1355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----------- 1420 (2105)
T COG5032 1355 LLDLKRLLATWRQNAFLRINPELLPLLSSL-LNLQSSSLSKQLVSRGSSESA--ISINSFASVARKHFL----------- 1420 (2105)
T ss_pred hhhhhhhhhHHHHhhhhhhchhhccccchh-hhccchhccccccccchhhhh--HHHHHHHHHHHHhcC-----------
Confidence 233444554444443333222111100000 000000000000000000000 001111101000000
Q ss_pred hhhhhhhHHHhHHHHHHhHHHHhhhHHHHHHHHHHHhhHHHHHHHHHHhhhcCcCccchhhHHHH-----HHHHHHhhhH
Q 000483 806 QCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQ-----ELQKQLAMDR 880 (1464)
Q Consensus 806 ~~~~~~~lA~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~d~ 880 (1464)
+.+.|.+..++......+-. .+..+......++.+|++... ..+--..+..
T Consensus 1421 -----------------------~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1476 (2105)
T COG5032 1421 -----------------------PDNQLKKIYQLSNILISEAF-LLLRYLLLCRLGRRELKAGLNVWNLTNLELFSDIQE 1476 (2105)
T ss_pred -----------------------cHHHHHHHhhhhhhhcchHH-HHHHHHHHHHhhhHHHHHHHHhhcccchhHHHHHHH
Confidence 00111111110000000000 000000000011111211110 0000000000
Q ss_pred HHHH-HhHHhHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHhhhcCchHHHHHHHHHhhhcccccc-hhhhhhhhhcc
Q 000483 881 EEAQ-KLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQSYK-FIPLVYQIASR 958 (1464)
Q Consensus 881 ~e~~-~l~~~~~~fl~~Al~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~~~~v~~~~~~~l~~vPs~k-fl~~ipQL~sR 958 (1464)
.+.. ........+..++++..+.+...+..-+.++.+|.+.+|+..+....+.++...+........ |++++||+..+
T Consensus 1477 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1556 (2105)
T COG5032 1477 SEFFEWGKNLKLLSIIPPIEEIFLSNALSCYLQVKDLLKKLNLFELLGSLLSAKDAAGSYYKNFHIFDLEISVIPFIPQL 1556 (2105)
T ss_pred HHHHHhhhhhHHhccCCchhHHHHhhhccchHHHHHHHHhhHHHHHhhhhhhHHHHHHhhhhhcccccccccccchhhhh
Confidence 0111 111223455667788888888888777888899999999999987677777777777666655 78877777777
Q ss_pred ccCCccccccccHHHHHHHHHHHHHHhCCchhhhhHhhccccccc---------hhhhccccchhhhhhHHHHHHH----
Q 000483 959 MGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRI---------KDKQRSRNSFVVDMDKKLAAEN---- 1025 (1464)
Q Consensus 959 L~~~~~~~~~~~f~~~L~~Ll~~i~~~hP~~~l~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~a~~---- 1025 (1464)
+..... .-...+..++.++++.||++..+++.+..++... ....+.+....+........+.
T Consensus 1557 ~~~l~~-----~~~~~~~~~l~~~~~~~~~a~~~~L~~~~~s~~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~E~~~~~ 1631 (2105)
T COG5032 1557 LSSLSL-----LDLNSAQSLLSKIGKEHPQALVFTLRSAIESTALSKESVALSLENKSRTHDPSLVKEALELSDENIRIA 1631 (2105)
T ss_pred hhhcch-----hHHHHHHHHHHhhhhhchhhhhhhhhHHHHHhhhhhHhHHHHHhhhhhcCChhhHhHHHhhhhhhhhhh
Confidence 765321 1235689999999999999999999865443221 1111112111111111111111
Q ss_pred --------------HHHHHHhHHHH--HHHH-------------------------HHHHHHHHHHHHHHHhc-cccccc
Q 000483 1026 --------------LLEELSSYHGA--IIRQ-------------------------MKQMVDVYIKLAELETR-REQDTN 1063 (1464)
Q Consensus 1026 --------------il~~l~~~~~~--~~~~-------------------------~~~l~~~~~~la~~~~~-~~~~~~ 1063 (1464)
++..++..+.+ +--. ...+.+.+........+ +....+
T Consensus 1632 ~~l~~~~~~~~l~q~~~r~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 1711 (2105)
T COG5032 1632 YPLLHLLFEPILAQLLSRLSSENNKISVALLIDKPLHEERENFPSGLSLSSFQSSFLKELIKKSPRKIRKKFKIDISLLN 1711 (2105)
T ss_pred hhhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHhhhHHHHHHHHHhhhhhhh
Confidence 11111100110 0000 00000000000000000 000000
Q ss_pred cccc--------chhhhhhhccc---ccccccc--c-ccCCCCCCcccCC-CccccccccceEEEecC-CCCceEEEEEc
Q 000483 1064 KRIQ--------LPREIRCLRQL---ELVPVVT--A-TVPIDCTCQYNEG-SFPYFKGLAESVMVMNG-INAPKVVECFG 1127 (1464)
Q Consensus 1064 ~~~~--------~~~~l~~l~~l---~~~p~~t--~-~lp~~~~~~y~~~-~~~~i~~f~~~~~v~~s-~~~Pk~i~~~g 1127 (1464)
.... +++.+.++... ...|... . .+.+..+++|..+ ++|.|.+|.|++.+++| .++||+++++|
T Consensus 1712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~P~~~~~~k~~v~I~~f~p~~~~~~~~~~~p~rl~~rg 1791 (2105)
T COG5032 1712 LSRKLYISVLRSIRKRLKRLLELRLKKVSPKLLLFHAFLEIKLPGQYLLDKPFVLIERFEPEVSVVKSHLQRPRRLTIRG 1791 (2105)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHhccccccccCCcccccCCCCceEEEecCceeeeecccccceEEEEEe
Confidence 0000 01111111000 0011100 0 1122233455444 67899999999999987 99999999999
Q ss_pred CCCceeeEEEecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceeEEcCCCCchHHHhhhhcc
Q 000483 1128 SDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTR 1207 (1464)
Q Consensus 1128 sdG~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~ 1207 (1464)
+||+.|++++|+ +||+|||++|||++++||++|+++++|+||++.|++|+|+|+||++|+||||||++|++.|+....+
T Consensus 1792 sdG~~y~~i~K~-~dDlRQD~~~~Ql~~l~n~iL~~~~~~~~R~l~i~~Y~Vipls~~~GiIe~vpn~~tl~sI~~~~~~ 1870 (2105)
T COG5032 1792 SDGKLYSFIVKG-GDDLRQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVIPLSPGSGIIEWVPNSDTLHSILREYHK 1870 (2105)
T ss_pred cCCcEEEEEeec-CccchHHHHHHHHHHHHHHHHHhChHhhhcCccceeeeeEeccCCcceEEEecCcchHHHHHHHHhh
Confidence 999999999995 6999999999999999999999999999999999999999999999999999999999999976433
Q ss_pred CCCCCCCcCCCcchhHH--HHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhcccchhhhee
Q 000483 1208 NGGAHGRYGIGDWSFLK--CREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIV 1285 (1464)
Q Consensus 1208 ~~~~~~r~~~~~~~~~~--~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyil 1285 (1464)
++++......+ ++-.......|.+.|...+..++|+|++||+++|++|.+|+.+|+|||+|+|+|||+||||
T Consensus 1871 ------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~f~~~~~w~~aR~Ny~~SlA~ySvigYiL 1944 (2105)
T COG5032 1871 ------RKNISIDQEKKLAARLDNLKLLLKDEFFTKATLKSPPVLYDWFSESFPNPEDWLTARTNFARSLAVYSVIGYIL 1944 (2105)
T ss_pred ------hcCCChhHHhhhhhhhhhhcccchhHHhhhhhcCCCchHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 22222111111 1111112234677888888888899999999999999999999999999999999999999
Q ss_pred ccCCCCCCeeEEecCCCeEEEeecccccc-cccCCCCCCCCCcccccccccccccccccchhHHHHHHHHHHHhcChHHH
Q 000483 1286 GLGDRHAMNILIDQATAEVVHIDLGVAFE-QGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEAL 1364 (1464)
Q Consensus 1286 gLGDRH~~NILld~~tG~v~hIDfg~~f~-~g~~l~~pE~VPFRLT~niv~~mG~~g~eG~F~~~~~~t~~~Lr~~~~~l 1364 (1464)
|+|||||+|||||+.||+++|||||++|+ +|+.+++||.|||||||||+++||++|+||.||.+|+.++++||++.+.|
T Consensus 1945 glgDRH~~NIliD~~sG~viHiDFg~il~~~p~~~~~pE~vPFrLT~~iv~~mg~~g~EG~Fr~~c~~~~~~LRk~~~~L 2024 (2105)
T COG5032 1945 GLGDRHPGNILIDRSSGHVIHIDFGFILFNAPGRFPFPEKVPFRLTRNIVEAMGVSGVEGSFRELCETAFRALRKNADSL 2024 (2105)
T ss_pred cCCCcCCceEEEEcCCCcEEEehHHHHHhcCCCCCCCcccCcHhhhHHHHHhcCccchhhHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999999999977665 56679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCcccccChhHHHhhhhcccccccCCCCCCccccccchhHHHHHHHHHhhhcCCCC--CCCcCHHHHHHH
Q 000483 1365 LTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEG--GEMRSVHGQVQQ 1442 (1464)
Q Consensus 1365 ~~iL~~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~rv~~KL~g~~~--~~~lsv~~qV~~ 1442 (1464)
++++++|++|||++|...|- .. ...+.++..+.+|+..|+.|.+. ...++|+++|+.
T Consensus 2025 ~~~le~f~~d~l~~W~~~p~-------------------~~--~~~~~~~~~v~~rf~~kl~~~~~~~~~~l~I~~sv~~ 2083 (2105)
T COG5032 2025 MNVLELFVRDPLIEWRRLPC-------------------FR--EIQNNEIVNVLERFRLKLSEKDAEKFVDLLINKSVES 2083 (2105)
T ss_pred HHHHHHHhcCcchhhhcCcc-------------------cc--chHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHH
Confidence 99999999999999972210 00 12345666788999999998653 356899999999
Q ss_pred HHHHccCchhhhhhCcccccCC
Q 000483 1443 LIQDAIDPERFCLMFPGWGAWL 1464 (1464)
Q Consensus 1443 LI~~Atd~~NLa~m~~gW~pwl 1464 (1464)
||++|||+.|||+||+||+|||
T Consensus 2084 li~~a~d~~~L~~~yi~w~~f~ 2105 (2105)
T COG5032 2084 LITQATDPFQLATMYIGWMPFW 2105 (2105)
T ss_pred HHHHHcCHHHHHhhccccccCC
Confidence 9999999999999999999997
No 5
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.1e-74 Score=760.13 Aligned_cols=967 Identities=17% Similarity=0.226 Sum_probs=703.6
Q ss_pred ccccCHHHHHHHHHHhchhhHHHHhhHhHHHHhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhcccc--
Q 000483 330 WLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSHK-- 407 (1464)
Q Consensus 330 wL~Id~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPD~~yGi~~~~~-- 407 (1464)
.+++++.++..-+..-++|++++.++|.....+.. +. ........|+|-+||.+|+|-|.+||+|+..-
T Consensus 2413 ~~~lpp~Li~yl~kt~~~wh~~I~lLE~~~~~~~~-------~~--~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~~~ 2483 (3550)
T KOG0889|consen 2413 PIELPPHLIKYLGKTYNLWHTSIRLLEDHQSNKEM-------EN--TKGDESCLDSLAELYRSLNEEDMFYGLWRRRAKF 2483 (3550)
T ss_pred CCCCCHHHHHHHhccchHHHHHHHHHHHHHHHHHh-------hh--hhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhcc
Confidence 46889999999999999999999999987654410 10 11234567999999999999999999998653
Q ss_pred -hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhchhh
Q 000483 408 -LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMH 486 (1464)
Q Consensus 408 -l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~ 486 (1464)
-+.+...||..|.|++|+..||.++.+... | ..| +.++| |.-|++ .||+|.+.|.+|+
T Consensus 2484 ~eT~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~-------~-----~~~-----~~~~E--y~lWed--~WI~Ca~eL~QWd 2542 (3550)
T KOG0889|consen 2484 PETMVALSYEQLGFWEEAQSLYEKAQVKARE-------G-----AIP-----YSESE--YKLWED--HWIRCASELQQWD 2542 (3550)
T ss_pred HHHHHHHHHHHhhhHHHHhhHHHHHHHHHhc-------c-----cCC-----CCcHH--HHHHHH--HHHHHHHHHHHHH
Confidence 357779999999999999999999887533 1 112 34445 778986 5999999999999
Q ss_pred HHHHhhhccccccCCCCCCcchhHHHHHHHHhcCCCCCcccccCCCCCCCcCcccchhhhhHHHHHHHHhcCCh---HHH
Q 000483 487 VLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDS---EEF 563 (1464)
Q Consensus 487 ~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~~L~al~~~d~---~~f 563 (1464)
++..+++... -.++-.|+|||+.+|+.+....-.. .....+..+|...+|+++.++++.+. ..+
T Consensus 2543 vl~e~~k~~~-----------~~~llle~aWrlsdw~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 2609 (3550)
T KOG0889|consen 2543 VLTEFGKHEG-----------NYELLLECAWRLSDWNDQKDALEQK--AKSLSDVPGFRKELYDAFLALQKKNSNGVGEF 2609 (3550)
T ss_pred HHHHHHhccC-----------CceeeeehhccCCcchhHHHHHHHh--hhccCCCCcHHHHHHHHHHHHHHHHhhhhhHH
Confidence 9999886532 2356679999999999876543211 13345667888999999999987543 578
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHHH
Q 000483 564 YRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNT 643 (1464)
Q Consensus 564 ~~~i~~aR~~l~~~Ls~~s~ES~~~~y~~lvrLq~L~ELe~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 643 (1464)
..+|..+-+.-+.++.++..-++..-++.+..+|++.|++|+.++.-.+...+ .+. ......+++.+.+
T Consensus 2610 ~~~i~e~~~l~i~~w~~lP~~v~~~h~~lL~~~QqivEl~Ea~~I~s~l~~~n----~~n-------~~~~~~d~Ksil~ 2678 (3550)
T KOG0889|consen 2610 ERLIGEAIQLAIREWRQLPERVNHGHVPLLQAFQQIVELQEAAQIYSDLNDGN----VQN-------LDNKAQDIKSILQ 2678 (3550)
T ss_pred HHHHHHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHHHHhccccc----ccc-------cchhHHHHHHHHH
Confidence 88888888888888887765555555688888999999999999865444321 111 1112345788999
Q ss_pred HHHHHHHhhhhchhhhhhHHHHHHHHHHhcc----------------------cchHHHHHHHHHHHHHHhcCChhHHHH
Q 000483 644 EWSSILKRTQLHMNLLEPFMAFRRVLLQILS----------------------CKDFTMQHLLESASTLRKGFRLSQAAA 701 (1464)
Q Consensus 644 ~W~~rl~~~~~~~~~~EpiL~~R~~vl~il~----------------------~~e~~~~~wl~~a~laRkag~~~~A~~ 701 (1464)
+|+.|++.+++|+++|+.+..||+.+++++. .|+ .++..+.+|+.|||+|-..+|.+
T Consensus 2679 ~Wr~RlP~~~Dd~~~Wsdl~~WRq~~y~~I~~~~~~~~~~~~~~~ns~~~~~Gyhe-~A~~in~fakvArkh~l~~vcl~ 2757 (3550)
T KOG0889|consen 2679 TWRDRLPNVWDDMNQWSDLITWRQHAYSMINKAYLPLVPYKQNASNSNNLYRGYHE-LAWAINRFAKVARKHGLPDVCLN 2757 (3550)
T ss_pred HHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHhcccchhhhccCCcchHHHhHHH-HHHHHHHHHHHHHhcCChHHHHH
Confidence 9999999999999999999999999988742 223 67788999999999999999999
Q ss_pred HHHHHhhhcCCCCCCCchhhhhHHH-HHHHHHHHcC-ChHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHhhcCChHH
Q 000483 702 ALHELKFLYTGPGDQCSTVYWLGRL-EEAKLLRAQG-QHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRI 779 (1464)
Q Consensus 702 aL~~l~~l~~~~~~q~~~~~~~~~l-E~Ak~lW~~G-e~~~Ai~~Lk~l~~~~~~~~~~a~~~~llG~wlae~~~e~~~~ 779 (1464)
.|..+.+++. -+..+++.++ |+|+..-... |...+++.++......+...+.|+.+.+.|.++++.+...+..
T Consensus 2758 ~L~~iytlp~-----veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn 2832 (3550)
T KOG0889|consen 2758 QLAKIYTLPN-----VEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEAN 2832 (3550)
T ss_pred HHHHHhccCc-----chHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhH
Confidence 9999887743 2445777775 7888888765 8899999888777777778899999999999999977444433
Q ss_pred HHHHhhhhhhhcccccccchhHHHHhhhhhhhhHHHhHHHHHHhHHHHhhhHHHHHHHHHHHhhHHHHHHHHHHhhhcCc
Q 000483 780 ILENYLKPAVSFSEDQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTK 859 (1464)
Q Consensus 780 I~~~Y~~~a~~~~~~~~~~~~~~~~~~~~~~~~lA~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~ 859 (1464)
+. +..|+++. +..+++|+.||.|+|.+|+.- +.
T Consensus 2833 --~~-fs~AvQi~-----------~~l~KaW~~Wg~y~~~~f~~e---------------------------------~~ 2865 (3550)
T KOG0889|consen 2833 --KA-FSAAVQID-----------DGLGKAWAEWGKYLDNRFNKE---------------------------------PV 2865 (3550)
T ss_pred --HH-HHHHHHHH-----------hhhHHHHHHHHHHHHHHHhcc---------------------------------Cc
Confidence 23 44488764 235789999999999988630 00
Q ss_pred CccchhhHHHHHHHHHHhhhHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCccH-HHHHHHHHHhhhcCch--HHHHHHH
Q 000483 860 GEKTDYSIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDV-RVVFRLVSLWFSLSSR--QNVIKNM 936 (1464)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~d~~e~~~l~~~~~~fl~~Al~~Yl~sL~~~~~~~~-~~~~RllsLWl~~~~~--~~v~~~~ 936 (1464)
-..+.+.||.||++++...+.+.. ..+.|+ |||-.-++ ..+.+++
T Consensus 2866 ------------------------------ni~~a~~avsCyLqA~~~~~~skaRk~iakv--LwLls~dda~~~l~~~~ 2913 (3550)
T KOG0889|consen 2866 ------------------------------NISFACNAVSCYLQAARLYNSSKARKLIAKV--LWLLSFDDSLGTLGDVF 2913 (3550)
T ss_pred ------------------------------ccHHHHHHHHHHHHHhccccchhhHHHHHHH--HHHHHhccccchHHHHH
Confidence 024777999999999999876654 467787 88865433 3678999
Q ss_pred HHhhhcccccchhhhhhhhhccccCCccccccccHHHHHHHHHHHHHHhCCchhhhhHhhccccccchhhh---------
Q 000483 937 VDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRIKDKQ--------- 1007 (1464)
Q Consensus 937 ~~~l~~vPs~kfl~~ipQL~sRL~~~~~~~~~~~f~~~L~~Ll~~i~~~hP~~~l~~l~~~~~~~~~~~~~--------- 1007 (1464)
.+++..||.+.|++|+|||+..+.+.+. +.+..++.+||+.||||+.||+.+.+..-.+.+++
T Consensus 2914 ~k~l~~ip~~~wl~~IPQLl~sLs~~e~--------~~~~~iL~kia~~yPQal~f~lRta~~~~~i~qR~~~~~~~~~~ 2985 (3550)
T KOG0889|consen 2914 DKFLGEIPVWNWLYFIPQLLTSLSKKEA--------KLVRLILIKIAKSYPQALYFPLRTAREDLVIEQRQQVEVMGDKS 2985 (3550)
T ss_pred HHhhccCCchhhhhhhHHHHhhccccch--------hHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999998642 57889999999999999999998764321111000
Q ss_pred -----ccccchhhhhhH-----HHHHHHHHH--------------HHHhHH-------HHHHHHHHHH---------HHH
Q 000483 1008 -----RSRNSFVVDMDK-----KLAAENLLE--------------ELSSYH-------GAIIRQMKQM---------VDV 1047 (1464)
Q Consensus 1008 -----~~~~~~~~~~~~-----~~~a~~il~--------------~l~~~~-------~~~~~~~~~l---------~~~ 1047 (1464)
-.|.+.+....+ ..+.+.+++ .++..+ ..++.++..- ...
T Consensus 2986 ~~~~p~~r~~~i~~~~r~~~p~~~s~~~~ld~~~~~w~~~~~l~~il~~~~~~la~~~~~~~~~i~~~~~~~~~e~~~r~ 3065 (3550)
T KOG0889|consen 2986 DTTDPMGRPSKISQKQRNLHPILSSLEKILDSVQLVWERLFDLEEILKTAYQLLAKTLETLFDKIQARFKSTPEEHALRL 3065 (3550)
T ss_pred CCCCCCCcHHHHHHHhhccCcchhhHHhhhccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccHHHHHH
Confidence 011111111100 011111111 111111 1111111110 000
Q ss_pred HHHHHH-HHh----ccc--ccc---------------------------------cc-----cccchhhhhhhcc-----
Q 000483 1048 YIKLAE-LET----RRE--QDT---------------------------------NK-----RIQLPREIRCLRQ----- 1077 (1464)
Q Consensus 1048 ~~~la~-~~~----~~~--~~~---------------------------------~~-----~~~~~~~l~~l~~----- 1077 (1464)
+..+-+ ... +.. ... +. ...++..+.+++.
T Consensus 3066 v~al~~~~~~~~~~r~~ivt~~~~~~~~~~~~l~~~~~~vl~~~~~~~~k~dFi~~~~~~~~~~~l~~~i~klk~w~~~l 3145 (3550)
T KOG0889|consen 3066 VNALLNIDGIQNGNRLGIVTKNTKSLSDTEMNLNRFASNVLPDPVRKKFKEDFITNKDGMKCICDLENYIDKLRKWRSRL 3145 (3550)
T ss_pred HHHHHHHhhhccccccccccccccCCcchHHHHHHHHHHhcchHHHHHHHHHHHhcccCCcccccHHHHHHHHHHHHHHH
Confidence 111111 000 000 000 00 0011111111110
Q ss_pred ---cccccc----------cc-c---ccCCCCCCccc-----CCCccccccccceEEEe-cCCCCceEEEEEcCCCceee
Q 000483 1078 ---LELVPV----------VT-A---TVPIDCTCQYN-----EGSFPYFKGLAESVMVM-NGINAPKVVECFGSDGHKYR 1134 (1464)
Q Consensus 1078 ---l~~~p~----------~t-~---~lp~~~~~~y~-----~~~~~~i~~f~~~~~v~-~s~~~Pk~i~~~gsdG~~y~ 1134 (1464)
.+..|- +. + .-.+.-+++|. +..++.|.+|+|.|+++ ++..+-||++++|+||+.|.
T Consensus 3146 e~k~~~~pk~~~LE~~s~~L~~F~hq~~evEiPGqyl~~k~~~~~~v~I~RF~P~veiv~~~~~~~rRl~iRG~dGk~~~ 3225 (3550)
T KOG0889|consen 3146 ESKVDRFPKKLNLEEKSRFLSNFSHQFDEVEIPGQYLLDKSNNNYFVKIERFEPRVEIVRGHGMSYRRLYIRGSDGKIYP 3225 (3550)
T ss_pred HHHHhcccccccHHhhchHHhcccccCCcccCChHHhcccchhhhhhhHHHhccchhhhcccceeEEEEEEeccCCeecc
Confidence 011111 00 0 01122233442 12467899999999988 66788999999999999997
Q ss_pred EEEe-cCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCC
Q 000483 1135 QLAK-SGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHG 1213 (1464)
Q Consensus 1135 ~L~K-~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~ 1213 (1464)
|.+. +|.-+-|.++||+|+++++|..|.+++||+||++.+.++.+||++++++|+|.+|+.++|++|++.+....+
T Consensus 3226 ~~~~~~~~~~sRreErvlQL~r~lN~~l~~~~Et~rR~l~~~~p~~ipvs~q~rl~ed~ps~~tl~~I~~~~c~~~~--- 3302 (3550)
T KOG0889|consen 3226 FAVQYPGLRNSRREERVLQLFRMLNESLGKNKETRRRHLEFKLPIVIPVSSQMRLVEDKPSSITLQEIYEEYCARNN--- 3302 (3550)
T ss_pred eeeecccCCCccHHHHHHHHHHHHHHHhccChhhhhhhcCccCceeeeccCceEEecCCcchhhHHHHHHHHHHhcC---
Confidence 6554 366889999999999999999999999999999999999999999999999999999999999976433222
Q ss_pred CcCCCcc------hhHHHHhhhcc----hHhHHHHHHHHHhhhhh--hHHHHHHHHcCCchHHHHHHHHHHHhhcccchh
Q 000483 1214 RYGIGDW------SFLKCREHMSN----VKDKRIAFQEVCENFRP--VLHYFFLERFLQPAYWFEKRLAYTRSVAASSMV 1281 (1464)
Q Consensus 1214 r~~~~~~------~~~~~r~~~~~----~~~k~~~f~~i~~~~~p--vl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~v 1281 (1464)
+.+.+. .+.+|+..... .+.++.+|+.+...+.| ++++||.++|+++.++|.+|++|+.++|..++.
T Consensus 3303 -~~~D~~i~~~~d~l~~~~~~~~~~~~~~~lr~~i~e~i~~~~vp~sil~dy~~~tf~~~~d~w~frk~f~~qla~~~~~ 3381 (3550)
T KOG0889|consen 3303 -VSPDDPILLYFDRLAQAYSVLIGLTAAHQLRGQIFEDIQKTMVPRSILKDYFYKTFTNYSDFWTFRKQFTDQLAVFSFM 3381 (3550)
T ss_pred -CCcchhhHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCChhhhhhhHhHHHHHHHHHHHH
Confidence 222211 12233333211 24578899999999999 899999999999999999999999999999999
Q ss_pred hheeccCCCCCCeeEEecCCCeEEEeeccccc-ccccCCCCCCCCCcccccccccccccccccchhHHHHHHHHHHHhcC
Q 000483 1282 GYIVGLGDRHAMNILIDQATAEVVHIDLGVAF-EQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTN 1360 (1464)
Q Consensus 1282 gyilgLGDRH~~NILld~~tG~v~hIDfg~~f-~~g~~l~~pE~VPFRLT~niv~~mG~~g~eG~F~~~~~~t~~~Lr~~ 1360 (1464)
+|++.+|.|.|+.+++.+.||.|..-||-+.. +..+.+...|.|||||||||+.++|-.|+||.+...+.++.+||-++
T Consensus 3382 ~~~lni~~~~p~k~~~~~dsG~v~~~~~~~~~~~~~~~~~~~~~VpFRlTpni~~~i~~~~veg~l~~s~~a~ar~l~~p 3461 (3550)
T KOG0889|consen 3382 EYMLNINGRGPAKLTFAKDSGKVFNTDFLPSYISSKPIFHNNEPVPFRLTPNIQEFIGDFGVEGLLAGSMMAIARCLIEP 3461 (3550)
T ss_pred HHHHhcCCCCccceeeeeccccccchhhccCcccCccccccCCcCCeeecCCchhhhcchhhhhhhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999998 44567889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHccCCCcccccChhHHHhhhhcccccccCCCCCCccccccchhHHHHHHHHHhhhcCCC--CCCCcCHHH
Q 000483 1361 KEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYE--GGEMRSVHG 1438 (1464)
Q Consensus 1361 ~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~rv~~KL~g~~--~~~~lsv~~ 1438 (1464)
.+.+-.+|..|+||+++.|.....+... . ++..... ....++.|..|+.... +........
T Consensus 3462 ~~~l~~~l~~~~RDE~~~w~~~~~~~~~--------~-----~~~~~~~----v~~~v~~i~rrv~~~~~~~~ge~~~~~ 3524 (3550)
T KOG0889|consen 3462 DFELDPYLQLFFRDEIISWFKQQTKGVP--------A-----DPLLEEM----VNSNVDLIMRRVASLSSENSGELPDNQ 3524 (3550)
T ss_pred ccchhHHHHHHHHHHHHHHhhccccCCc--------C-----Chhhhhh----HHHHHHHHhhhhhhhccccccCCCCCc
Confidence 9999999999999999999753221100 0 0000011 1223444444443321 111223334
Q ss_pred HHHHHHHHccCchhhhhhCcccccCC
Q 000483 1439 QVQQLIQDAIDPERFCLMFPGWGAWL 1464 (1464)
Q Consensus 1439 qV~~LI~~Atd~~NLa~m~~gW~pwl 1464 (1464)
.+..||.+|+|++|||||+|.|+|||
T Consensus 3525 t~~~lis~A~s~~nLaqmDp~w~pWl 3550 (3550)
T KOG0889|consen 3525 TVIDLISQATSPDNLAQMDPTWHPWL 3550 (3550)
T ss_pred cHHHHHHHhcChhhhhcCCccccccC
Confidence 79999999999999999999999997
No 6
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=100.00 E-value=7.2e-69 Score=615.68 Aligned_cols=273 Identities=66% Similarity=1.167 Sum_probs=258.5
Q ss_pred cccccceEEEecCCCCceEEEEEcCCCceeeEEEecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcC
Q 000483 1104 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1183 (1464)
Q Consensus 1104 i~~f~~~~~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs 1183 (1464)
|.+|.|.|.|++|+++||+|+++|+||+.|.||+|. +||+|||+|+||||++||++|++++||++|+|.++||.|||||
T Consensus 1 ~~~f~~~v~v~~s~~~Pkri~~~gsdG~~y~fl~K~-~dDlR~D~rimQl~~~~n~il~~~~e~~~r~l~i~~y~vipls 79 (279)
T cd05171 1 VSKFKDVFTTAGGINAPKIITCVGSDGKKYKQLLKG-GDDDRQDAVMEQVFQLVNTLLERNKETRKRKLRIRTYKVVPLS 79 (279)
T ss_pred CCCccCeEEEecCCCCCEEEEEECCCCCEEEEEecC-CCcccHHHHHHHHHHHHHHHHhhChhhhhcCceeecceEEecC
Confidence 578999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred CCCceeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhc-----chHhHHHHHHHHHhhhhhhHHHHHHHHc
Q 000483 1184 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMS-----NVKDKRIAFQEVCENFRPVLHYFFLERF 1258 (1464)
Q Consensus 1184 ~~~GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~-----~~~~k~~~f~~i~~~~~pvl~~~f~~~f 1258 (1464)
+++||||||+|++||++|+.... |.+.++.|.++...+|++.+. ...+++++|++++++++|++++||+++|
T Consensus 80 ~~~GLIe~v~~~~tl~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~i~~~~~p~l~~~f~~~~ 156 (279)
T cd05171 80 PRAGILEWVDGTIPLGEYLVGAT---GAHERYRPGDWTARKCRKAMAEVQKESNEERLKVFLKICKNFRPVFRYFFLEKF 156 (279)
T ss_pred CCceEEEECCCChhHHHHHHHhh---hcccccCccchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHhCcHHHHHHHHHHC
Confidence 99999999999999999987543 567788887777666766652 2356889999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeecccccccccCCCCCCCCCcccccccccccc
Q 000483 1259 LQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMG 1338 (1464)
Q Consensus 1259 ~~~~~w~~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~~l~~pE~VPFRLT~niv~~mG 1338 (1464)
++|++||.+|++||+|+|++||+|||||||||||+||||++.||+|+|||||++|++|+.+++||.|||||||||+++||
T Consensus 157 ~~~~~~~~~r~~F~~S~A~~s~~~yilglgDRh~~NIll~~~tG~v~hiDf~~~f~~~~~l~~pe~vPFRLT~~~~~~lg 236 (279)
T cd05171 157 LDPQDWFERRLAYTRSVATSSIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFEQGKILPVPETVPFRLTRDIVDGMG 236 (279)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccEEEEcCcCcEEEEechhhhccCcCCCCCCcCChhhhHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000483 1339 VTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1380 (1464)
Q Consensus 1339 ~~g~eG~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1380 (1464)
++|++|.|+.+|++++++||++++.|+++|++|+|||+++|+
T Consensus 237 ~~g~~g~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~dpl~~W~ 278 (279)
T cd05171 237 ITGVEGVFRRCCEKTLEVLRDNKDAILTILEVLLYDPLYSWT 278 (279)
T ss_pred CCCCcchHHHHHHHHHHHHHcChHHHHHHHHHHHhCcccccc
Confidence 999999999999999999999999999999999999999996
No 7
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=100.00 E-value=3.5e-67 Score=608.31 Aligned_cols=276 Identities=37% Similarity=0.642 Sum_probs=245.2
Q ss_pred cccccceEEEecCCCCceEEEEEcCCCceeeEEEecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcC
Q 000483 1104 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1183 (1464)
Q Consensus 1104 i~~f~~~~~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs 1183 (1464)
|.+|.++|+|++|+++||+|+++|+||+.|+||+|+ +||||||+||||||++||.+|+++++|++|+|.|+||.||||+
T Consensus 1 I~~f~~~v~V~~Sk~~Pkri~~~gsDG~~y~fLlK~-~dDLR~D~RimQlf~l~N~ll~~~~~~~~r~L~i~tY~ViPLs 79 (307)
T cd05170 1 IESVGSTVTILPTKTKPKKLAFLGSDGKKYTYLFKG-REDLHLDERIMQFLSIVNTMFASIKDQESPRFRARHYSVTPLG 79 (307)
T ss_pred CccccCeEEEEecCCCceEEEEECCCCCEEEEEecC-CCcccHHHHHHHHHHHHHHHHHhChhhhccCceeecceEEEcC
Confidence 678999999999999999999999999999999994 6999999999999999999999999999999999999999999
Q ss_pred CCCceeEEcCCCCchHHHhhhhccCCCC----------C--CC----cCCCcchhHHHHhhhc-------------chHh
Q 000483 1184 PSAGILEWVDGTVPLGDYLIGSTRNGGA----------H--GR----YGIGDWSFLKCREHMS-------------NVKD 1234 (1464)
Q Consensus 1184 ~~~GlIE~v~~t~tl~~il~~~~~~~~~----------~--~r----~~~~~~~~~~~r~~~~-------------~~~~ 1234 (1464)
+++||||||+|+.||.+++..+.+..+. + .. ..+.+..+.+....+. ....
T Consensus 80 ~~~GLIEwv~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 159 (307)
T cd05170 80 PRSGLIQWVDGATPLFGLYKRWQQREAVLQAQKSQVGYQNPQIPGIVPRPSDLFYNKITPALKAHGLSLDVSRRDWPLSV 159 (307)
T ss_pred CCcceEEEcCCChhHHHHHHHHHHhhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHhhccccccchhhccHHH
Confidence 9999999999999999998653221110 0 00 0111111222222111 1134
Q ss_pred HHHHHHHHHhhhhh-hHHHHHHHHcCCchHHHHHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeeccccc
Q 000483 1235 KRIAFQEVCENFRP-VLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAF 1313 (1464)
Q Consensus 1235 k~~~f~~i~~~~~p-vl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f 1313 (1464)
++++|.+++++++| .++++++..+++|++||.+|++||+|+|++||+|||||||||||+||||++.||+|+|||||++|
T Consensus 160 ~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~w~~~r~~f~~s~A~~s~~~yilglgDRh~~NIli~~~tG~v~hiDf~~~f 239 (307)
T cd05170 160 LRQVLDELMQETPKDLLARELWCSSTTSSEWWSVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNVCF 239 (307)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCccEEEEcCCCcEEEEeeHhhh
Confidence 68899999999888 68889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccccccccccccccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000483 1314 EQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1380 (1464)
Q Consensus 1314 ~~g~~l~~pE~VPFRLT~niv~~mG~~g~eG~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1380 (1464)
++|+.+++||.|||||||||+++||++|++|.|+.+|+.++++||++++.|+++|++|+||||++|.
T Consensus 240 ~~~~~l~~pE~VPFRLT~~~~~~lg~~g~~G~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~DPl~~W~ 306 (307)
T cd05170 240 EKGKSLRIPEKVPFRMTQNIETALGLTGVEGVFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDWT 306 (307)
T ss_pred cccCCCCCCCCCCeeeCHHHHHHhCCCCCchhHHHHHHHHHHHHHcCHHHHHHHHHHHhhCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999995
No 8
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=100.00 E-value=5.9e-67 Score=589.95 Aligned_cols=247 Identities=23% Similarity=0.370 Sum_probs=236.8
Q ss_pred cccccceEEEe-cCCCCceEEEEEcCCCceeeEEEec-CccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEE
Q 000483 1104 FKGLAESVMVM-NGINAPKVVECFGSDGHKYRQLAKS-GNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVP 1181 (1464)
Q Consensus 1104 i~~f~~~~~v~-~s~~~Pk~i~~~gsdG~~y~~L~K~-G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViP 1181 (1464)
|.+|.|.++|+ ++.++||+|+++|+||+.|+||+|. |++|+|+|+||||||++||.+|.+++||++|+|.++||.|||
T Consensus 1 i~rf~p~~~iv~~~~~~pkri~i~gsdG~~y~fLvk~~~~~d~R~d~Ri~Ql~~liN~~l~~~~et~~r~l~i~~y~viP 80 (253)
T cd05163 1 IERFLPTVEIVRGHGYCYRRLTIRGHDGSIYPFLVQYPAARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLVVP 80 (253)
T ss_pred CcccCCeEEEEccCCCcCcEEEEECCCCCEEEEEEecCCchhHHHHHHHHHHHHHHHHHHhcCHHHHhCcccccceeEEE
Confidence 67899999987 7889999999999999999999994 468999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhh--hHHHHHHHHcC
Q 000483 1182 FTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRP--VLHYFFLERFL 1259 (1464)
Q Consensus 1182 Ls~~~GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~p--vl~~~f~~~f~ 1259 (1464)
|++++|||||++++.||.+++.. |+++|+++++++.| +|++||+++|+
T Consensus 81 Ls~~~gLie~~~~~~tl~~i~~~------------------------------~~~~~~~i~~~~~p~~~l~~~~~~~~~ 130 (253)
T cd05163 81 LSPQIRLVEDDPSYISLQEIYED------------------------------KLEIYNEIQKDMVPDTILKNYILSTFP 130 (253)
T ss_pred cCCccceEEECCCCccHHHHHHH------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHCC
Confidence 99999999999999999987631 77899999999766 99999999999
Q ss_pred CchHHHHHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeecccccccccC-CCCCCCCCcccccccccccc
Q 000483 1260 QPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMG 1338 (1464)
Q Consensus 1260 ~~~~w~~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~~-l~~pE~VPFRLT~niv~~mG 1338 (1464)
+|++||.+|++||+|+|++||+|||+|||||||+|||||..||+|+|||||++|++|+. +++||.|||||||||+++||
T Consensus 131 ~~~~~~~~r~~ft~s~A~~s~~gYilglgdRh~~nili~~~tG~v~hiDf~~~f~~~~~~~~~pE~VPFRLT~ni~~~~g 210 (253)
T cd05163 131 TYQDYWLFRKQFTYQLALLSFMTYILSINNRNPDKIFISRDTGNVYQSDLLPSINNNKPLFHNNEPVPFRLTPNIQHLIG 210 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhEEEEcCCCcEEEEeeeeeecCCCcCCCCCCcCCcccCHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999987 48999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000483 1339 VTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1380 (1464)
Q Consensus 1339 ~~g~eG~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1380 (1464)
++|+||+|+.+|++++++||++++.|+++|++|+||||++|.
T Consensus 211 ~~g~eG~f~~~~~~~~~~Lr~~~~~l~~~L~~fi~Dpl~~W~ 252 (253)
T cd05163 211 PIGLEGILTSSMMAIARCLTEPEFDLENALQLFIRDELIAWH 252 (253)
T ss_pred CcCcCCcHHHHHHHHHHHHhcCHHHHHHHHHHHHcChhhhhc
Confidence 999999999999999999999999999999999999999996
No 9
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=100.00 E-value=2.8e-66 Score=597.12 Aligned_cols=275 Identities=37% Similarity=0.681 Sum_probs=245.0
Q ss_pred cccccceEEEecCCCCceEEEEEcCCCceeeEEEecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcC
Q 000483 1104 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1183 (1464)
Q Consensus 1104 i~~f~~~~~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs 1183 (1464)
|.+|.|+|+|++|+++||+|+++|+||+.|+||+|. +||+|||+|++|+|++||.+|++++||++|+|.++||.|||++
T Consensus 1 I~~f~~~v~v~~s~~~pk~i~~~gsdG~~y~fl~K~-~dDlR~D~r~~ql~~~~n~il~~~~~~~~~~l~~~ty~Vipls 79 (280)
T cd05169 1 ISSFDPVLKVIPSKQRPRRLTIVGSDGKEYKFLLKG-HEDLRLDERVMQLFGLINTLLKNDSETSKRNLSIQTYSVIPLS 79 (280)
T ss_pred CccccCeEEEEeCCCCCeEEEEECCCCCEEEEeecC-CCcchHHHHHHHHHHHHHHHHHhChhhhhcCcceeeccEEecC
Confidence 678999999999999999999999999999999995 6999999999999999999999999999999999999999999
Q ss_pred CCCceeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHH--HhhhcchHhHHHHHHHHHhhhhh-hHHHHHHHHcCC
Q 000483 1184 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKC--REHMSNVKDKRIAFQEVCENFRP-VLHYFFLERFLQ 1260 (1464)
Q Consensus 1184 ~~~GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~--r~~~~~~~~k~~~f~~i~~~~~p-vl~~~f~~~f~~ 1260 (1464)
+++||||||+|+.||.+++.......+.+.......+....+ .+.+ ...+|.++|++++++.+| ++++||+..|++
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~~~~i~~~~~~~~l~~~~~~~~~~ 158 (280)
T cd05169 80 PNVGLIGWVPGCDTLHSLIREYRKKRNIPLNLEHRLMELKSAPDYDNL-TLIQKLEVFEYALNNTPGDDLRKILWLKSPS 158 (280)
T ss_pred CCcceEEeCCCCchHHHHHHHHHHHcCCChhHHHHHHHHHhhhhhhhC-CHHHHHHHHHHHHHhCCHHHHHHHHHHhCCC
Confidence 999999999999999999976543332211000000000000 0111 124678999999998776 899999999999
Q ss_pred chHHHHHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeecccccccccC-CCCCCCCCccccccccccccc
Q 000483 1261 PAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMGV 1339 (1464)
Q Consensus 1261 ~~~w~~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~~-l~~pE~VPFRLT~niv~~mG~ 1339 (1464)
|..|+.+|++|++|+|++||+|||||||||||+|||||+.||+++|||||++|++|+. +++||.|||||||||+++||+
T Consensus 159 ~~~w~~~r~~F~~S~A~~Sv~~YilglgDRH~~NIll~~~tG~v~HIDfg~~f~~~~~~~~~pE~VPFRLT~~~~~~lG~ 238 (280)
T cd05169 159 SEAWLERRTNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPFRLTRMLVNALGV 238 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhheeccCCCcceEEEEcCCCCEEEEecHHHHhhccccCCCCCcCCcccCHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999986 689999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000483 1340 TGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1380 (1464)
Q Consensus 1340 ~g~eG~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1380 (1464)
+|++|.|+.+|+.++++||++++.|+++|++|+||||++|.
T Consensus 239 ~g~~G~F~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~W~ 279 (280)
T cd05169 239 SGIEGTFRTTCEDVMNVLRENKESLMAVLEAFVHDPLLSWR 279 (280)
T ss_pred CCCCCchHHHHHHHHHHHhcChHHHHHHHHHHHhCcccccc
Confidence 99999999999999999999999999999999999999996
No 10
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=100.00 E-value=2.4e-64 Score=562.79 Aligned_cols=233 Identities=35% Similarity=0.663 Sum_probs=225.7
Q ss_pred cccccceEEEecCCCCceEEEEEcCCCceeeEEEecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcC
Q 000483 1104 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1183 (1464)
Q Consensus 1104 i~~f~~~~~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs 1183 (1464)
|.+|.++++|++|+++||+|+++|+||+.|+||+|. +||+|||+|+||+|++||.+|+++++|++|+|.++||+|+|++
T Consensus 1 i~~~~~~v~v~~S~~~Pkri~~~~~dG~~~~fl~K~-~dDlR~D~r~~Ql~~l~n~~l~~~~~~~~~~l~~~~y~vipls 79 (235)
T cd05172 1 IVGFDERVLVLSSLRKPKRITIRGSDEKEYPFLVKG-GEDLRQDQRIQQLFGVMNNILAQDTACRQRALQLRTYQVIPMT 79 (235)
T ss_pred CCCcCCceEEeccCCCCEEEEEECCCCCEEEEEEEC-CCcccHHHHHHHHHHHHHHHHHhChhhccCCceeecceEEEeC
Confidence 678999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred CCCceeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchH
Q 000483 1184 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 1263 (1464)
Q Consensus 1184 ~~~GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~ 1263 (1464)
+++||||||+|+.||++|+.. +++++||++.+++|++
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~-------------------------------------------~~l~~~~~~~~~~~~~ 116 (235)
T cd05172 80 PRFGLIEWLENTTPLKEILKN-------------------------------------------DLLRRALVEMSASPEA 116 (235)
T ss_pred CCCceEEEcCCchhHHHHHhh-------------------------------------------HHHHHHHHHHCCCHHH
Confidence 999999999999999998641 4678899999999999
Q ss_pred HHHHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeecccccccccC-CCCCCCCCcccccccccccccccc
Q 000483 1264 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMGVTGV 1342 (1464)
Q Consensus 1264 w~~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~~-l~~pE~VPFRLT~niv~~mG~~g~ 1342 (1464)
||.+|++|++|+|++|++|||||||||||+||||++.||+++|||||++|++|+. +++||.|||||||||+++||+.|+
T Consensus 117 ~~~~r~~F~~S~A~~S~~~YilglgDRH~~NIli~~~tG~v~HIDfg~~f~~~~~~~~~pE~vPFRLT~~~~~~~g~~g~ 196 (235)
T cd05172 117 FLSLRDHFAKSLAAMCVSHWILGIGDRHLSNFLVDLETGGLVGIDFGHAFGTATQFLPIPELMPFRLTPQFVNLMEPMKA 196 (235)
T ss_pred HHHHHHHHHHHHHHHHHHhheeeccCCCcccEEEECCCCcEEEEeeHhhhccCCccCCCCCCCCeeeCHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999999999999999999999986 999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000483 1343 EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1380 (1464)
Q Consensus 1343 eG~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1380 (1464)
+|.|+.+|+.++++||++++.|+++|++|+|||+++|.
T Consensus 197 ~G~f~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~w~ 234 (235)
T cd05172 197 DGLLRSCMVHTLRALRNERHLLLSTMDVFVKEPSLDWK 234 (235)
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHhhCchhhhc
Confidence 99999999999999999999999999999999999995
No 11
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=100.00 E-value=7.4e-63 Score=552.10 Aligned_cols=236 Identities=48% Similarity=0.912 Sum_probs=228.0
Q ss_pred cccccceEEEecCCCCceEEEEEcCCCceeeEEEecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcC
Q 000483 1104 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1183 (1464)
Q Consensus 1104 i~~f~~~~~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs 1183 (1464)
|.+|+++++|++|+++||+|+++|+||+.|+||+|. +||||||+|++|+|+++|.+|.++++|++|+|.++||+|+|++
T Consensus 1 i~~~~~~~~v~~s~~~P~~i~~~~~dG~~~~~l~K~-~dDLRqD~ri~ql~~l~n~il~~~~~~~~~~l~~~~y~Vipl~ 79 (237)
T cd00892 1 ISGFEDEVEILNSLQKPKKITLIGSDGNSYPFLCKP-KDDLRKDARLMEFNTLINRLLSKDPESRRRRLYIRTYAVIPLN 79 (237)
T ss_pred CccccCeEEEEeccCCceEEEEEcCCCCEEEEEEeC-CCcccHHHHHHHHHHHHHHHHHhCchhccCceeeEeceEEEcC
Confidence 678999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred CCCceeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchH
Q 000483 1184 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 1263 (1464)
Q Consensus 1184 ~~~GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~ 1263 (1464)
+++||||||+|++||++++... .+|++++||.++|++|.+
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~~----------------------------------------~~~~l~~~~~~~~~~~~~ 119 (237)
T cd00892 80 EECGIIEWVPNTATLRSILLEI----------------------------------------YPPVFHEWFLENFPDPSA 119 (237)
T ss_pred CCCceEEECCCCccHHHHHHHh----------------------------------------CCHHHHHHHHHHCcCHHH
Confidence 9999999999999999987531 046889999999999999
Q ss_pred HHHHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeecccccccccCCCCCCCCCccccccccccccccccc
Q 000483 1264 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE 1343 (1464)
Q Consensus 1264 w~~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~~l~~pE~VPFRLT~niv~~mG~~g~e 1343 (1464)
|+.+|++|+.|+|++|++|||||||||||+||||++.||+++|||||++|++|+.+++||+|||||||||+++||+.|++
T Consensus 120 ~~~~~~~F~~SlA~~s~~~YilgigDRh~~NIli~~~tG~~~HIDfg~~~~~~~~~~~pe~vPFRLT~~~~~~lg~~g~~ 199 (237)
T cd00892 120 WLKARNAYTRSTAVMSMVGYILGLGDRHGENILFDSNTGDVVHVDFNCLFDKGETLEVPERVPFRLTQNMVDAMGVLGVE 199 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcccEEEEcCCCcEEEEehHhhhcccccCCCCCCCCcccCHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000483 1344 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1380 (1464)
Q Consensus 1344 G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1380 (1464)
|.|+.+|+.++++||++++.|+++|++|+||||++|.
T Consensus 200 g~F~~~~~~~~~~Lr~~~~~l~~~l~~fi~dpl~~w~ 236 (237)
T cd00892 200 GLFRKSCEVTLRLLRSNKETLMSVLETFIHDPLVEWS 236 (237)
T ss_pred CchHHHHHHHHHHHHhCHHHHHHHHHHHhhccchhcc
Confidence 9999999999999999999999999999999999996
No 12
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=100.00 E-value=1.7e-59 Score=520.53 Aligned_cols=222 Identities=49% Similarity=0.878 Sum_probs=215.7
Q ss_pred cccccceEEEecCCCCceEEEEEcCCCceeeEEEecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcC
Q 000483 1104 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1183 (1464)
Q Consensus 1104 i~~f~~~~~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs 1183 (1464)
|.+|.++|+|++|+++||+|+++|+||+.|.||+|. .||+|||+|++|+|+++|.+|++++||++|++.++||.|+|++
T Consensus 1 i~~~~~~v~v~~S~~~P~~i~~~~~dG~~~~fl~K~-~dDlR~D~rv~ql~~~~n~il~~~~~~~~~~l~~~~y~vipls 79 (222)
T cd05164 1 IASFDDAVRILGSKQKPKKITLTGSDGKKYLFLVKG-GEDLRQDQRIMQLFQFCNTLLAKDAECRRRKLTIRTYAVIPLN 79 (222)
T ss_pred CccccCeeEEecccCCCEEEEEECCCCCEEEEEEeC-CCcccHHHHHHHHHHHHHHHHHhCchhccCceEeecceEEEcC
Confidence 678999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred CCCceeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchH
Q 000483 1184 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 1263 (1464)
Q Consensus 1184 ~~~GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~ 1263 (1464)
+++||||||+|+.|+++ ++++||+..|+++++
T Consensus 80 ~~~GliE~v~~~~sl~~------------------------------------------------~l~~~~~~~~~~~~~ 111 (222)
T cd05164 80 SRSGLIEWVEGTTTLKP------------------------------------------------VLKKWFWLQFPDPEQ 111 (222)
T ss_pred CCCceEEEcCCcchHHH------------------------------------------------HHHHHHHHHCcCHHH
Confidence 99999999999999873 456788999999999
Q ss_pred HHHHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeecccccccccCCCCCCCCCccccccccccccccccc
Q 000483 1264 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE 1343 (1464)
Q Consensus 1264 w~~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~~l~~pE~VPFRLT~niv~~mG~~g~e 1343 (1464)
||.+|++|+.|+|++|++|||||||||||+||||++.||+++|||||++|++|+.+++||.|||||||||+++||+.|++
T Consensus 112 ~~~~r~~F~~SlA~~s~~~YvlglgDRh~~NIli~~~tG~v~hIDf~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~g~~ 191 (222)
T cd05164 112 WFAARKNYTRSTAVMSIVGYILGLGDRHLDNILIDRETGEVVHIDFGCIFEKGKTLPVPELVPFRLTRNIINGMGITGVE 191 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCceEEEECCCCcEEEEccHHhhccCCCCCCCCCCCEEeCHHHHHHhCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHccC
Q 000483 1344 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHD 1374 (1464)
Q Consensus 1344 G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~D 1374 (1464)
|.|+.+|+.++++||++++.|+++|++|+||
T Consensus 192 G~f~~~~~~~~~~Lr~~~~~l~s~l~~fv~d 222 (222)
T cd05164 192 GLFRKICEQTLEVFRKHRDTLIAFLEVFVYD 222 (222)
T ss_pred ChHHHHHHHHHHHHHhCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999997
No 13
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=100.00 E-value=1.6e-54 Score=481.69 Aligned_cols=219 Identities=36% Similarity=0.616 Sum_probs=210.5
Q ss_pred cccccceEEEecCCCCceEEEEEcCCCceeeEEEecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcC
Q 000483 1104 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1183 (1464)
Q Consensus 1104 i~~f~~~~~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs 1183 (1464)
+..|.+.++|++|+++||+|+++|+||+.|+||+|. +||+|||+|++|+++++|.+|++++ ++++.+++|.|+|++
T Consensus 1 ~~~~~~~~~v~~s~~~P~~l~~~~~dg~~~~~l~K~-~ddlR~D~~~~ql~~~~n~il~~~~---~~~l~~~~y~vipls 76 (219)
T cd00142 1 IAIDVKICRIMPSKTRPKKLTLIGADGKEYRILFKN-GDDLRQDERVLQFIRLMNKILKKEL---GLDLFLTTYSVIPLS 76 (219)
T ss_pred CCccCCceEEEcccCCCEEEEEEccCCCEEEEEEeC-CCchhHHHHHHHHHHHHHHHHHhCC---CCCceEEeEEEEEec
Confidence 356889999999999999999999999999999996 5999999999999999999999876 689999999999999
Q ss_pred CCCceeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchH
Q 000483 1184 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 1263 (1464)
Q Consensus 1184 ~~~GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~ 1263 (1464)
+++||||||+|+.|++ +++++||...++++++
T Consensus 77 ~~~GlIE~v~~~~sl~------------------------------------------------~~l~~~~~~~~~~~~~ 108 (219)
T cd00142 77 PRSGLIEVVPGSVTLE------------------------------------------------DDLSKWLKRKSPDEDE 108 (219)
T ss_pred CCceEEEEeCCCchhH------------------------------------------------HHHHHHHHHHCcCHHH
Confidence 9999999999999987 3567899999999999
Q ss_pred HHHHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeecccccccccCCCCCCCCCccccccccccccccccc
Q 000483 1264 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE 1343 (1464)
Q Consensus 1264 w~~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~~l~~pE~VPFRLT~niv~~mG~~g~e 1343 (1464)
|+.+|++|+.|+|++|++|||||||||||+||||++.||+++|||||++|++++.+..||+|||||||||+++||+.|++
T Consensus 109 ~~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~~G~~~hIDfg~~~~~~~~~~~~e~vPFRLT~~~~~~~g~~~~~ 188 (219)
T cd00142 109 WQEARENFISSLAGYSVAGYILGIGDRHPDNIMIDLDTGKLFHIDFGFIFGKRKKFLGRERVPFRLTPDLVNALGTGGVF 188 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCccEEEECCCCeEEEEeeHHhhCcCcCCCCCCCCCEeccHHHHHHhCCcchh
Confidence 99999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHccC
Q 000483 1344 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHD 1374 (1464)
Q Consensus 1344 G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~D 1374 (1464)
|.|+.+|+.++++||++++.|+++|++|++|
T Consensus 189 g~F~~~~~~~~~~lr~~~~~i~~ll~~~~~~ 219 (219)
T cd00142 189 GPFRSLCVKAMLILRRHAGLLLNLLSLMLRD 219 (219)
T ss_pred hhHHHHHHHHHHHHHhChHHHHHHHHHhccC
Confidence 9999999999999999999999999999987
No 14
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=100.00 E-value=5.8e-53 Score=493.95 Aligned_cols=250 Identities=25% Similarity=0.383 Sum_probs=221.1
Q ss_pred cccccCCCCCCcccCCCcccccccc-ceEEEecCCCCceEEEEEcCC--CceeeEEEecCccchhHHHHHHHHHHHHHHH
Q 000483 1084 VTATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTF 1160 (1464)
Q Consensus 1084 ~t~~lp~~~~~~y~~~~~~~i~~f~-~~~~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~G~dDlRqD~r~~Qlf~liN~l 1160 (1464)
.++.+|.+|+. .+.+|. ++++|++|+++|++|++.|+| |+.|.+|+|.| ||||||++++|++++||.+
T Consensus 47 ~~~~lP~~p~~--------~i~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~g-DDLRqD~l~~Ql~~l~~~i 117 (352)
T cd00891 47 QEFTLPLDPRL--------EIKGLIIEKCKVMDSKKKPLWLVFKNADPSGEPIKVIFKVG-DDLRQDMLTLQMIRLMDKI 117 (352)
T ss_pred CCccCCCCCce--------EEEEEeccceEEeccccCCcEEEEEecCCCCCEEEEEeccC-CchhHHHHHHHHHHHHHHH
Confidence 45678887743 345554 569999999999999999999 99999999965 9999999999999999999
Q ss_pred HhhCcccccCCceeccceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHH
Q 000483 1161 LRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQ 1240 (1464)
Q Consensus 1161 L~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~ 1240 (1464)
|+++. .+|.+++|+|+|+++++||||||+|+.|+++|........+ +|.
T Consensus 118 ~~~~~----ldl~l~~Y~Vip~~~~~GlIE~V~ns~tl~~I~~~~~~~~~---------------------------~~~ 166 (352)
T cd00891 118 WKKEG----LDLRMTPYGCIATGDGVGMIEVVPNSETIAKIQKKAGGVGG---------------------------AFK 166 (352)
T ss_pred HHHCC----CCeeeEEEEEEEccCCceEEEEeCCCccHHHHHHhcCcccc---------------------------ccc
Confidence 99875 78999999999999999999999999999998764221111 111
Q ss_pred HHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeecccccccccC-C
Q 000483 1241 EVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-L 1319 (1464)
Q Consensus 1241 ~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~~-l 1319 (1464)
.+.+++||...++++..|..+|.+|++|+|+|||+||||||||||++|||||+ +|+++|||||++|+.++. +
T Consensus 167 ------~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysv~~YiLgigDRH~~NILi~~-~G~~~HIDFG~ilg~~~~~~ 239 (352)
T cd00891 167 ------DNPLMNWLKKKNKGEEDYEKAVENFTYSCAGYCVATYVLGIGDRHNDNIMLTK-TGHLFHIDFGHFLGNFKKKF 239 (352)
T ss_pred ------cchHHHHHHHhCCCHHHHHHHHHHHhhhHHHHHHHHHHccccccCCCceEECC-CCCEEEEehHHhhccCCccC
Confidence 12467899999999999999999999999999999999999999999999994 999999999999997653 4
Q ss_pred C-CCCCCCccccccccccccccccc--chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000483 1320 K-TPERVPFRLTRDIIDGMGVTGVE--GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1380 (1464)
Q Consensus 1320 ~-~pE~VPFRLT~niv~~mG~~g~e--G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1380 (1464)
+ .||+||||||++|+++||+.|.+ |.|+.+|+.++.+||+|.+.|++++++|+++++.+|.
T Consensus 240 ~~~~E~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~l~~lm~~~~lp~~~ 303 (352)
T cd00891 240 GIKRERAPFVLTPDMAYVMGGGDSEKFQRFEDLCCKAYNILRKHGNLFINLFSLMLSAGIPELQ 303 (352)
T ss_pred CCCCCCCCeeecHHHHHHhCCCCCcccchHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCCccC
Confidence 4 69999999999999999999976 9999999999999999999999999999999998874
No 15
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=100.00 E-value=2.4e-52 Score=487.74 Aligned_cols=288 Identities=23% Similarity=0.432 Sum_probs=247.3
Q ss_pred cccccCCCCCCcccCCCccccccc-cceEEEecCCCCceEEEEEcCCC---ceeeEEEecCccchhHHHHHHHHHHHHHH
Q 000483 1084 VTATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDG---HKYRQLAKSGNDDLRQDAVMEQFFGLVNT 1159 (1464)
Q Consensus 1084 ~t~~lp~~~~~~y~~~~~~~i~~f-~~~~~v~~s~~~Pk~i~~~gsdG---~~y~~L~K~G~dDlRqD~r~~Qlf~liN~ 1159 (1464)
++..+|++|+. .|.++ .+++.|++|+++|+++++.|+|| +.|.+|+|.| ||||||++++|++++||.
T Consensus 51 ~~~~lP~dp~~--------~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~~~~i~K~g-DDLRqD~l~~Ql~~lm~~ 121 (350)
T cd00896 51 EPIPLPLDPSI--------EITGIIPEESSVFKSALMPLKLTFKTEKGNEEGEYPVIFKVG-DDLRQDQLVIQIISLMDR 121 (350)
T ss_pred CCCcCCCCCCe--------EEEEEecCceEEeccccCceEEEEEeCCCCCCceEEEEecCC-cchhHhHHHHHHHHHHHH
Confidence 34667887753 23343 36799999999999999999999 9999999965 999999999999999999
Q ss_pred HHhhCcccccCCceeccceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHH
Q 000483 1160 FLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAF 1239 (1464)
Q Consensus 1160 lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f 1239 (1464)
+|+++. ++|.++||+|+|+++++||||||+ +.|+++|+....
T Consensus 122 il~~~~----ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~~i~~~~~--------------------------------- 163 (350)
T cd00896 122 LLKKEN----LDLKLTPYKVLATSPTDGLVEFIP-SVTLASILKKYG--------------------------------- 163 (350)
T ss_pred HHHhCC----CCceeEEEEEEEcCCCCcceEEEe-cccHHHHHHHHH---------------------------------
Confidence 999875 899999999999999999999999 999999864310
Q ss_pred HHHHhhhhhhHHHHHHHHcCCchHH----HHHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeeccccccc
Q 000483 1240 QEVCENFRPVLHYFFLERFLQPAYW----FEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQ 1315 (1464)
Q Consensus 1240 ~~i~~~~~pvl~~~f~~~f~~~~~w----~~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~ 1315 (1464)
.+.+||...++++..| ..+|.+|++|+|+|||+||||||||||++||||+. ||+++|||||++|++
T Consensus 164 ---------~l~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLGigDRH~~NILi~~-~G~~~HIDFG~ilg~ 233 (350)
T cd00896 164 ---------GILNYLRKLNPDDGGPLGISPEVMDTFVKSCAGYCVITYILGVGDRHLDNLLLTK-DGKLFHIDFGYILGR 233 (350)
T ss_pred ---------HHHHHHHHHCCCccccccchHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEcC-CCCEEEEEhHHhhCC
Confidence 0567888888888774 79999999999999999999999999999999995 999999999999998
Q ss_pred ccCCCCCCCCCcccccccccccccccccc--hhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhHHHhhhhcc
Q 000483 1316 GLMLKTPERVPFRLTRDIIDGMGVTGVEG--VFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEM 1393 (1464)
Q Consensus 1316 g~~l~~pE~VPFRLT~niv~~mG~~g~eG--~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~ 1393 (1464)
++ .|++||||||++|+++||+.|.+| .|+..|+.++.+||++.+.|++++++|+++|+.+|...
T Consensus 234 ~p---~~~~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~lR~~~~~il~l~~lm~~~~ip~~~~~----------- 299 (350)
T cd00896 234 DP---KPFPPPMKLCKEMVEAMGGAQSEGYQEFKSYCCEAYNILRKSANLILNLFSLMVDANIPDIALD----------- 299 (350)
T ss_pred CC---CCCCCCeeccHHHHHHhCCCCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHcCCCCcccccC-----------
Confidence 85 578899999999999999999999 99999999999999999999999999999999877422
Q ss_pred cccccCCCCCCccccccchhHHHHHHHHHhhhcCCCCCCCcCHHHHHHHHHHHccCc--hhhhhhCcccccCC
Q 000483 1394 DDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDP--ERFCLMFPGWGAWL 1464 (1464)
Q Consensus 1394 ~~~~~~~~~~~~~~~~~n~~a~~~l~rv~~KL~g~~~~~~lsv~~qV~~LI~~Atd~--~NLa~m~~gW~pwl 1464 (1464)
...++..+++|+.-..+. -.....+..||++|.+. .++.-++..|+.||
T Consensus 300 --------------------~~~~i~~l~~rf~l~~s~--~ea~~~~~~lI~~s~~~~~t~~~d~~h~~aq~~ 350 (350)
T cd00896 300 --------------------PDKAILKVQEKFRLDLSD--EEAIKHFQNLINDSVNALFPVVVDRLHAWAQYW 350 (350)
T ss_pred --------------------HHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 123578888888642221 22456799999999987 37777888887765
No 16
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=100.00 E-value=7.7e-52 Score=483.21 Aligned_cols=248 Identities=20% Similarity=0.346 Sum_probs=217.0
Q ss_pred ccccCCCCCCcccCCCcccccccc-ceEEEecCCCCceEEEEEcCC--CceeeEEEecCccchhHHHHHHHHHHHHHHHH
Q 000483 1085 TATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1161 (1464)
Q Consensus 1085 t~~lp~~~~~~y~~~~~~~i~~f~-~~~~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL 1161 (1464)
.+.+|++|+.. +.++. ++++|++|+++|++|+|.|+| |+.|.+|+|.| ||||||++++|++++||++|
T Consensus 48 ~~~lP~~p~~~--------~~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~g-DDLRQD~l~~Qli~lm~~i~ 118 (353)
T cd05166 48 KCRLPLNPALD--------VKGIDVRECSYFNSNALPLKISFVNADPMGENISVIFKAG-DDLRQDMLVLQMINIMDKIW 118 (353)
T ss_pred CCccCCCCceE--------EEeEEcCceEEeccccCceEEEEEecCCCCCEEEEEEeCC-CcccHHHHHHHHHHHHHHHH
Confidence 45678877532 23333 679999999999999999999 99999999964 99999999999999999999
Q ss_pred hhCcccccCCceeccceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHH
Q 000483 1162 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1241 (1464)
Q Consensus 1162 ~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~ 1241 (1464)
+++. .+|.+++|.|+|+++++|+||||+|+.|+++|...... ... |.
T Consensus 119 ~~~~----ldL~l~~Y~vip~~~~~GlIE~V~ns~tl~~I~~~~g~----~~~------------------------~~- 165 (353)
T cd05166 119 LQEG----LDLRMITFRCLSTGYDRGMVELVPDAETLRKIQVEEGL----TGS------------------------FK- 165 (353)
T ss_pred HhCC----CCceeEEEEEEEcCCCcceEEEeCCchhHHHHHHHhCc----ccc------------------------cc-
Confidence 9864 78999999999999999999999999999998753210 000 00
Q ss_pred HHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeecccccccccCCC-
Q 000483 1242 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLK- 1320 (1464)
Q Consensus 1242 i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~~l~- 1320 (1464)
.+.+++||.+.++++.+|..+|.+|++|+|+|||+||||||||||++||||+ .+|+++|||||++|++++.+.
T Consensus 166 -----~~~l~~~l~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLgigDRH~~NILl~-~~G~l~HIDFG~~lg~~~~~~~ 239 (353)
T cd05166 166 -----DRPIAKWLMKHNPSELEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLT-KSGHMFHIDFGKFLGHAQMFGG 239 (353)
T ss_pred -----chhHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEEeeHHhccccccccc
Confidence 1257889999999999999999999999999999999999999999999999 599999999999999876432
Q ss_pred -CCCCCCcccccccccccccc----cccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000483 1321 -TPERVPFRLTRDIIDGMGVT----GVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1380 (1464)
Q Consensus 1321 -~pE~VPFRLT~niv~~mG~~----g~eG~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1380 (1464)
.||+||||||++|+++||.. +..|.|+..|+.++.+||++.+.|++++++|+++++.+|.
T Consensus 240 ~~~E~~PFrLT~emv~~~ggg~~~s~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~ 304 (353)
T cd05166 240 FKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELS 304 (353)
T ss_pred CCCCCCCccccHHHHHHhcCCCCCcchHhHHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccC
Confidence 48999999999999999854 3457999999999999999999999999999999999985
No 17
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=100.00 E-value=1e-50 Score=472.73 Aligned_cols=250 Identities=23% Similarity=0.368 Sum_probs=217.5
Q ss_pred ccccCCCCCCcccCCCccccccc-cceEEEecCCCCceEEEEEcCC-----CceeeEEEecCccchhHHHHHHHHHHHHH
Q 000483 1085 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSD-----GHKYRQLAKSGNDDLRQDAVMEQFFGLVN 1158 (1464)
Q Consensus 1085 t~~lp~~~~~~y~~~~~~~i~~f-~~~~~v~~s~~~Pk~i~~~gsd-----G~~y~~L~K~G~dDlRqD~r~~Qlf~liN 1158 (1464)
.+.+|++|+.. +.++ .++++|++|+++|++|++.|+| |+.|.+|+|.| ||||||++++|+|++||
T Consensus 53 ~~~lPl~P~~~--------v~~i~~~~~~v~~Sk~~P~~l~f~~~d~~~~~g~~~~~IfK~g-DDLRQD~l~lQli~lm~ 123 (366)
T cd05165 53 SFQSPLNPSLK--------LGELRIEKCKVMDSKKKPLWLVFENADPTALSNENVGIIFKNG-DDLRQDMLTLQILRIMD 123 (366)
T ss_pred cCCCCCCCcee--------EeeeecCceEEehhhcCCcEEEEEccCcccccCCceeEEEecC-CcccHHHHHHHHHHHHH
Confidence 45678887542 3333 3568999999999999999998 69999999965 99999999999999999
Q ss_pred HHHhhCcccccCCceeccceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHH
Q 000483 1159 TFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIA 1238 (1464)
Q Consensus 1159 ~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~ 1238 (1464)
.+|+++. .+|.+++|+|+|+++++|+||||+|+.|+++|........ ...
T Consensus 124 ~i~~~~~----ldL~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~~~~--------------------------~~~ 173 (366)
T cd05165 124 SIWKEEG----LDLRMLPYGCLSTGDKIGLIEVVRDSTTIANIQQETGGNA--------------------------TAA 173 (366)
T ss_pred HHHHhCC----CCceeEEEEEEEecCCceEEEEeCCchhHHHHHHhccccc--------------------------ccc
Confidence 9999865 7899999999999999999999999999999875321100 000
Q ss_pred HHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeecccccccccC
Q 000483 1239 FQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM 1318 (1464)
Q Consensus 1239 f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~~ 1318 (1464)
|. .+.+.+||.+.++++..|..+|.+|++|+|+||++||||||||||++||||+. ||+++|||||++|+.++.
T Consensus 174 f~------~~~l~~wl~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRH~~NILi~~-~G~l~HIDFG~ilg~~~~ 246 (366)
T cd05165 174 FK------KEALLHWLKEKNPTEEKLDAAIEEFTLSCAGYCVATFVLGIGDRHNDNIMVKE-TGQLFHIDFGHILGNYKS 246 (366)
T ss_pred cC------cHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcceEEcC-CCCEEEEehHHhhccCCc
Confidence 10 13577899999998899999999999999999999999999999999999996 999999999999998753
Q ss_pred -CC-CCCCCCccccccccccccccccc------chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000483 1319 -LK-TPERVPFRLTRDIIDGMGVTGVE------GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1380 (1464)
Q Consensus 1319 -l~-~pE~VPFRLT~niv~~mG~~g~e------G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1380 (1464)
++ .||+||||||++|+++||+.|.+ |.|+.+|+.++.+||++.+.|++++++|+..++.++.
T Consensus 247 ~~~i~~E~~PFkLT~emv~~mg~~~~~~~s~~f~~F~~~c~~a~~~LR~~~~~il~l~~lM~~s~ip~~~ 316 (366)
T cd05165 247 KFGINRERVPFVLTPDFVHVIGRGKKDNTSEHFQRFQDLCEKAYLALRRHGNLLIILFSMMLMSGLPELT 316 (366)
T ss_pred cCCCCCCCCCeeecHHHHHHhcccCCcCCChhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCcccC
Confidence 55 49999999999999999988776 9999999999999999999999999999998888764
No 18
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=100.00 E-value=2.1e-51 Score=468.29 Aligned_cols=268 Identities=21% Similarity=0.331 Sum_probs=229.1
Q ss_pred CCCCceEEEEEcCCCc--eeeEEEecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceeEEcC
Q 000483 1116 GINAPKVVECFGSDGH--KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVD 1193 (1464)
Q Consensus 1116 s~~~Pk~i~~~gsdG~--~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~ 1193 (1464)
-++|||+.+..|+.+. .|.+|+|. +||||||+++||+|++||.+|+++ +++|.++||+|+|+++++||||||+
T Consensus 14 ~~~r~r~~s~~~~~~~~~~~~~i~K~-gDDLRqD~l~~Ql~~~~~~i~~~~----~l~l~l~~Y~vip~~~~~GlIE~V~ 88 (293)
T cd05168 14 KKERIRKSSPYGHLKSWDLRSVIVKT-GDDLRQELLAMQLIQQFDRIFKEE----GLPLWLRPYEILVTSSNSGLIETIP 88 (293)
T ss_pred HHHHhhhcCccCcCCCCCEEEEEEeC-CCCccHHHHHHHHHHHHHHHHHHC----CCCceeeeEEEEEccCCceeEEEeC
Confidence 3578899989888765 89999996 599999999999999999999976 4889999999999999999999999
Q ss_pred CCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCc-hHHHHHHHHHH
Q 000483 1194 GTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQP-AYWFEKRLAYT 1272 (1464)
Q Consensus 1194 ~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~-~~w~~~R~~ft 1272 (1464)
|+.|+++|...... ..|.+++||.+.|++| +.|+.+|.+|+
T Consensus 89 ns~tl~~i~k~~~~--------------------------------------~~~~l~~~f~~~~~~~~~~~~~a~~nF~ 130 (293)
T cd05168 89 DTVSIDSLKKKLTS--------------------------------------KFKSLLDFFKKTFGDPSERFREAQKNFI 130 (293)
T ss_pred CchhHHHHHHHhcc--------------------------------------CCchHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 99999998643110 1357889999999885 68999999999
Q ss_pred HhhcccchhhheeccCCCCCCeeEEecCCCeEEEeecccccccccCCCCCCCCCccccccccccccccccc--chhHHHH
Q 000483 1273 RSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE--GVFRRCC 1350 (1464)
Q Consensus 1273 ~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~~l~~pE~VPFRLT~niv~~mG~~g~e--G~F~~~~ 1350 (1464)
+|+|++||+||||||||||++||||++ +|+++|||||++|+.++....||+|||||||+|+++||+.|.+ |.|+.+|
T Consensus 131 ~S~A~ySvv~YvLGigDRH~~NILi~~-~G~liHIDFG~~fg~~~~~~~~E~vPFrLT~~mv~~mGg~~s~~~~~F~~~c 209 (293)
T cd05168 131 ESLAGYSLICYLLQIKDRHNGNILIDN-DGHIIHIDFGFMLSNSPGNVGFETAPFKLTQEYIEVMGGVNSDLFNYFKKLF 209 (293)
T ss_pred HHHHHHHHHHHHhhccccCCCceEEcC-CCCEEEEehHHhhcccccCCCCCCCCEEecHHHHHHhCCCCCchhHHHHHHH
Confidence 999999999999999999999999997 9999999999999999887789999999999999999999987 9999999
Q ss_pred HHHHHHHhcChHHHHHHHHHHccCCCc-ccccChhHHHhhhhcccccccCCCCCCccccccchhHHHHHHHHHhhhcCCC
Q 000483 1351 EKTLSVMRTNKEALLTIVEVFIHDPLY-KWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYE 1429 (1464)
Q Consensus 1351 ~~t~~~Lr~~~~~l~~iL~~f~~DpL~-~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~rv~~KL~g~~ 1429 (1464)
+.++.+||++++.|++++++|+++|-+ .... ....+..+++|+....
T Consensus 210 ~~~~~~LR~~~~~il~ll~~m~~~~~lp~f~~--------------------------------~~~~i~~l~~r~~l~~ 257 (293)
T cd05168 210 LKGFMALRKHVDRIILLVEIMQSDSKLPCFKA--------------------------------GEFTIQQLRDRFMLNL 257 (293)
T ss_pred HHHHHHHHhchHHHHHHHHHHccCCCCccccC--------------------------------chHHHHHHHHHhCCCC
Confidence 999999999999999999999999533 2110 1124677778775422
Q ss_pred CCCCcCHHHHHHHHHHHccCchhhhhhCccccc
Q 000483 1430 GGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGA 1462 (1464)
Q Consensus 1430 ~~~~lsv~~qV~~LI~~Atd~~NLa~m~~gW~p 1462 (1464)
+ ...+..++..||++|.+. .-.++|-.|+-
T Consensus 258 s--e~~a~~~~~~lI~~s~~~-~~t~~yD~~q~ 287 (293)
T cd05168 258 T--EEQLEVFVDELINQSLDN-WRTRLYDKFQY 287 (293)
T ss_pred C--HHHHHHHHHHHHHHHHhc-hhHHHHHHHHH
Confidence 1 234678999999999984 66667766654
No 19
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=2.3e-50 Score=468.01 Aligned_cols=248 Identities=20% Similarity=0.341 Sum_probs=217.3
Q ss_pred ccccCCCCCCcccCCCccccccccc-eEEEecCCCCceEEEEEcCC--CceeeEEEecCccchhHHHHHHHHHHHHHHHH
Q 000483 1085 TATVPIDCTCQYNEGSFPYFKGLAE-SVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1161 (1464)
Q Consensus 1085 t~~lp~~~~~~y~~~~~~~i~~f~~-~~~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL 1161 (1464)
+..+|++|+. .|.+|.+ +++|++|+++|++|++.++| |+.|.+|+|.| ||||||++++|++++||.+|
T Consensus 49 ~~~lPl~P~~--------~i~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~g-DDLRQD~l~lQli~lmd~i~ 119 (354)
T cd05177 49 SCCLPLNPAL--------RVKGIDADACSYFTSNAAPLKISFINANPLAKNISIIFKTG-DDLRQDMLVLQIVRVMDNIW 119 (354)
T ss_pred CCccCCCCCe--------EEEEEecCccEEehhhcCCCEEEEEecCCCCCeEEEEEeCC-CcccHHHHHHHHHHHHHHHH
Confidence 4668888743 4556654 69999999999999999999 89999999975 99999999999999999999
Q ss_pred hhCcccccCCceeccceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHH
Q 000483 1162 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1241 (1464)
Q Consensus 1162 ~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~ 1241 (1464)
+++. .+|.+++|+|+|+++++|+||||+|+.|+++|....... + . |.
T Consensus 120 ~~~~----ldl~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~~~-~---~------------------------~~- 166 (354)
T cd05177 120 LQEG----LDMQMIIYRCLSTGKTQGLVQMVPDAVTLAKIHRESGLI-G---P------------------------LK- 166 (354)
T ss_pred HHcC----CCceEEEEEEEecCCCceEEEEeCChHhHHHHHHhhCCC-c---c------------------------cc-
Confidence 9874 789999999999999999999999999999987542100 0 0 00
Q ss_pred HHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeecccccccccCCC-
Q 000483 1242 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLK- 1320 (1464)
Q Consensus 1242 i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~~l~- 1320 (1464)
.+.+.+||...++++.+|..+|.+|++|+|+|||+||||||||||++||||+ .||+++|||||++|++++.+.
T Consensus 167 -----~~~l~~~~~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRHn~NILi~-~~G~~~HIDFG~ilg~~~~~~~ 240 (354)
T cd05177 167 -----ENTIEKWFHMHNKLKEDYDKAVRNFFHSCAGWCVVTFILGVCDRHNDNIMLT-HSGHMFHIDFGKFLGHAQTFGS 240 (354)
T ss_pred -----hhhHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCceeEc-CCCCEEEEehHHhcCCCccccC
Confidence 1246789999999999999999999999999999999999999999999999 599999999999999987654
Q ss_pred -CCCCCCcccccccccccccccccc----hhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000483 1321 -TPERVPFRLTRDIIDGMGVTGVEG----VFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1380 (1464)
Q Consensus 1321 -~pE~VPFRLT~niv~~mG~~g~eG----~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1380 (1464)
.||+||||||++|+++||..|.++ .|+..|..++.+||+|.+.|++++++|+++|+.+|.
T Consensus 241 ~~~E~~PF~LT~emv~~~~~GG~~s~~f~~F~~~c~~a~~~lR~~~~~il~l~~lm~~s~iP~~~ 305 (354)
T cd05177 241 IKRDRAPFIFTSEMEYFITEGGKKPQRFQRFVELCCRAYNIVRKHSQLLLNLLEMMLHAGLPELK 305 (354)
T ss_pred CCcCCCCeeccHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccC
Confidence 489999999999998776656553 699999999999999999999999999999999985
No 20
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=100.00 E-value=3.4e-51 Score=449.87 Aligned_cols=199 Identities=39% Similarity=0.690 Sum_probs=190.6
Q ss_pred eEEEecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCC
Q 000483 1134 RQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHG 1213 (1464)
Q Consensus 1134 ~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~ 1213 (1464)
.|++|. +||+|||+|++|+|+++|.+|++++|+++|++.++||.|+|+++++||||||+|+.|++++
T Consensus 1 ~~~~K~-~dDlR~D~~~~ql~~~~n~il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~sl~~i------------ 67 (202)
T smart00146 1 AVIFKG-GDDLRQDERVLQLLRLMNKILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNSTTLHQI------------ 67 (202)
T ss_pred CeeecC-CCcccHHHHHHHHHHHHHHHHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCchhHHHH------------
Confidence 378995 5999999999999999999999999999999999999999999999999999999999875
Q ss_pred CcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhcccchhhheeccCCCCCC
Q 000483 1214 RYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAM 1293 (1464)
Q Consensus 1214 r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyilgLGDRH~~ 1293 (1464)
+++||.+.|++|..|+.+|++|++|+|++|++|||||||||||+
T Consensus 68 ------------------------------------l~~~~~~~~~~~~~~~~~~~~F~~SlA~~s~~~YilglgDRh~~ 111 (202)
T smart00146 68 ------------------------------------LYDWFKKKFPDPEDYFEARKNFTRSCAGYSVITYILGLGDRHND 111 (202)
T ss_pred ------------------------------------HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 56789999999999999999999999999999999999999999
Q ss_pred eeEEecCCCeEEEeecccccccccCCCCC-CCCCcccccccccccccccccchhHHHHHHHHHHHhcChHHHHHHHHHHc
Q 000483 1294 NILIDQATAEVVHIDLGVAFEQGLMLKTP-ERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFI 1372 (1464)
Q Consensus 1294 NILld~~tG~v~hIDfg~~f~~g~~l~~p-E~VPFRLT~niv~~mG~~g~eG~F~~~~~~t~~~Lr~~~~~l~~iL~~f~ 1372 (1464)
||||+ .||+++|||||++|++++.+..| |.|||||||||+++||+.|++|.|+.+|+.++++||++++.|+++|++|+
T Consensus 112 NIli~-~~G~v~hIDfg~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~~~~g~F~~~~~~~~~~Lr~~~~~i~~~l~~~~ 190 (202)
T smart00146 112 NIMLD-KTGHLFHIDFGFILGNGPKLFGFPERVPFRLTPEMVDVMGDSGYFGLFRSLCERALRALRKNSNLIMSLLELML 190 (202)
T ss_pred cEEEe-CCCCEEEEechhhhCccccCCCCCCCCCeecCHHHHHHhCCCcccchHHHHHHHHHHHHHcCHHHHHHHHHHHc
Confidence 99999 79999999999999999876555 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccC
Q 000483 1373 HDPLYKWALS 1382 (1464)
Q Consensus 1373 ~DpL~~W~~~ 1382 (1464)
+||+.+|...
T Consensus 191 ~d~l~~~~~~ 200 (202)
T smart00146 191 YDGLPDWRSG 200 (202)
T ss_pred CCCChhhcCC
Confidence 9999999743
No 21
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=1.5e-48 Score=453.00 Aligned_cols=248 Identities=25% Similarity=0.388 Sum_probs=214.5
Q ss_pred cccccCCCCCCcccCCCccccccc-cceEEEecCCCCceEEEEEcCCC-----ceeeEEEecCccchhHHHHHHHHHHHH
Q 000483 1084 VTATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDG-----HKYRQLAKSGNDDLRQDAVMEQFFGLV 1157 (1464)
Q Consensus 1084 ~t~~lp~~~~~~y~~~~~~~i~~f-~~~~~v~~s~~~Pk~i~~~gsdG-----~~y~~L~K~G~dDlRqD~r~~Qlf~li 1157 (1464)
..+.+|++|+.. +.++ .++++|++|+++|.++++.+.|| ..|.+|+|.| ||||||++++|++++|
T Consensus 53 ~~~~lPl~P~~~--------~~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~IfK~G-DDLRQD~l~lQli~lm 123 (365)
T cd00894 53 ESFRVPYDPGLR--------AGALVIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHG-DDLRQDMLILQILRIM 123 (365)
T ss_pred CCCCCCCCCceE--------EEEEEcCceEEEcccCCceEEEEECCCCCccCCCceeEEEeCC-CcccHHHHHHHHHHHH
Confidence 457788888542 2222 46799999999999999999886 5799999975 9999999999999999
Q ss_pred HHHHhhCcccccCCceeccceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHH
Q 000483 1158 NTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRI 1237 (1464)
Q Consensus 1158 N~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~ 1237 (1464)
|.+|+++. ++|++++|+|+|+++++|+||||+|+.|+++|........|.
T Consensus 124 d~i~~~~~----ldL~l~pY~vi~tg~~~GlIE~V~ns~tl~~I~~~~~~~~~~-------------------------- 173 (365)
T cd00894 124 ESIWETES----LDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTGA-------------------------- 173 (365)
T ss_pred HHHHHHcC----CCeEEEEEEEEEecCCceEEEEcCCchhHHHHHHhccccccc--------------------------
Confidence 99998754 899999999999999999999999999999987532111000
Q ss_pred HHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeeccccccccc
Q 000483 1238 AFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL 1317 (1464)
Q Consensus 1238 ~f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~ 1317 (1464)
|. .+.+.+||.+.+++++.|..++.+|++|+|+||++||||||||||++||||+. +|+++|||||++|+.++
T Consensus 174 -~k------~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLGIgDRHndNImi~~-~G~lfHIDFG~ilg~~~ 245 (365)
T cd00894 174 -FK------DEVLSHWLKEKCPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMITE-TGNLFHIDFGHILGNYK 245 (365)
T ss_pred -cc------chhHHHHHHHhCCCHHHHHHHHHHHHHHhHHHHHHHHhccccCccccceeEcC-CCCEEEEeeHHhhCCCC
Confidence 00 12578899999999999999999999999999999999999999999999995 99999999999999887
Q ss_pred C-CC-CCCCCCccccccccccccccccc-----chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcc
Q 000483 1318 M-LK-TPERVPFRLTRDIIDGMGVTGVE-----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYK 1378 (1464)
Q Consensus 1318 ~-l~-~pE~VPFRLT~niv~~mG~~g~e-----G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~ 1378 (1464)
. +. .||+||||||++|+++||+.|.+ +.|+..|+.++.+||++.+.|++++++|+...+.+
T Consensus 246 ~~~gi~~E~~PFkLT~e~v~vmg~~gg~~s~~f~~F~~~c~~a~~~LRk~~~lil~L~~lM~~sgip~ 313 (365)
T cd00894 246 SFLGINKERVPFVLTPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQ 313 (365)
T ss_pred ccCCCCCCCCCeeecHHHHHHhCccCCcCChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcc
Confidence 5 34 49999999999999999988766 47999999999999999999999999998665544
No 22
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=1.3e-48 Score=452.68 Aligned_cols=249 Identities=21% Similarity=0.322 Sum_probs=208.0
Q ss_pred ccccCCCCCCcccCCCccccccccceEEEecCCCCceEEEEEcCC--CceeeEEEecCccchhHHHHHHHHHHHHHHHHh
Q 000483 1085 TATVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLR 1162 (1464)
Q Consensus 1085 t~~lp~~~~~~y~~~~~~~i~~f~~~~~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~ 1162 (1464)
++.+|++|+... ..-+.++++|++|+++|++|++.+.| |+.|.+|+|. +||||||++++|++++||.+|+
T Consensus 52 ~~~lPl~p~~~~-------~~~~~~~~~v~~Sk~~Pl~l~f~~~~~~g~~~~~IfK~-gDDLRQD~l~~Qli~lmd~i~k 123 (361)
T cd05174 52 HLQSPLSPSIIL-------CEVCVDQCTFMDSKMKPLWIMYKNEEAGGGSVGIIFKN-GDDLRQDMLTLQMIQLMDVLWK 123 (361)
T ss_pred cCCCCCCCceEE-------EEEEcCcEEEEeccCCceEEEEeecCCCCCEEEEEEeC-CCchhHHHHHHHHHHHHHHHHH
Confidence 356788885432 23356889999999999999999976 9999999996 4999999999999999999999
Q ss_pred hCcccccCCceeccceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHH
Q 000483 1163 NHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEV 1242 (1464)
Q Consensus 1163 ~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i 1242 (1464)
++. ++|.+++|+|+|+++++||||||+|+.|+++|....... +. ...|+
T Consensus 124 ~~~----ldL~l~pY~vi~tg~~~GlIE~V~ns~Tl~~I~~~~~~~-~~------------------------~~~f~-- 172 (361)
T cd05174 124 QEG----LDLRMTPYGCLSTGDKTGLIEVVKNSDTIANIQLNKSNM-AA------------------------TAAFN-- 172 (361)
T ss_pred HCC----CCeeeEEEEEEEecCCceEEEEeCCchhHHHHHHhhccc-ch------------------------hcccc--
Confidence 864 899999999999999999999999999999987531100 00 00111
Q ss_pred HhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeeccccccccc--CCC
Q 000483 1243 CENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL--MLK 1320 (1464)
Q Consensus 1243 ~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~--~l~ 1320 (1464)
.+.+.+||.+.+|+ +.|..++.+|++|+|+||++||||||||||++||||++ +|+++|||||++|+..+ ...
T Consensus 173 ----~~~l~~~l~~~~~~-~~~~~A~~nF~~S~AgysVvtYiLGIGDRHn~NILi~~-~G~l~HIDFG~ilg~~~~~~~~ 246 (361)
T cd05174 173 ----KDALLNWLKSKNPG-DALDQAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRE-SGQLFHIDFGHFLGNFKTKFGI 246 (361)
T ss_pred ----chHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHHHHHHhcccCcCccceeEcC-CCCEEEEehHHhhcCCcccCCC
Confidence 13567888887765 35567799999999999999999999999999999995 99999999999999753 344
Q ss_pred CCCCCCcccccccccccccccc-----cchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcc
Q 000483 1321 TPERVPFRLTRDIIDGMGVTGV-----EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYK 1378 (1464)
Q Consensus 1321 ~pE~VPFRLT~niv~~mG~~g~-----eG~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~ 1378 (1464)
.||+||||||++|+++||..|. .|.|+.+|+.++.+||+|.+.|++++++|+...+.+
T Consensus 247 ~~E~vPFkLT~e~v~vmg~G~~~~s~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~~sgip~ 309 (361)
T cd05174 247 NRERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCEQAYKILRRHGTLFLHLFALMKAAGLPE 309 (361)
T ss_pred CCCCCCeeccHHHHHHHccCCCCCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 7999999999999999974322 269999999999999999999999999998665544
No 23
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=100.00 E-value=9.6e-49 Score=445.67 Aligned_cols=223 Identities=22% Similarity=0.379 Sum_probs=196.2
Q ss_pred EEEecCC-CCceEEEEEcCCC--ceeeEEEecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCc
Q 000483 1111 VMVMNGI-NAPKVVECFGSDG--HKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAG 1187 (1464)
Q Consensus 1111 ~~v~~s~-~~Pk~i~~~gsdG--~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~G 1187 (1464)
.+++++. ..|-.+.+.-.|| ..|.+|+|. +||||||++++|+|++||.+|++. +++|.++||+|+|+++++|
T Consensus 8 ~k~~~~~~~~P~~~~~~~~~~~~~~~~~i~K~-gDDLRqD~l~~Ql~~l~~~i~~~~----~l~l~l~~Y~vi~~s~~~G 82 (289)
T cd00893 8 PKILQSALKIPYLELKKLTDSTLINSEFIVKC-GDDLRQDILATQIITELQKIFELM----FLDLWLNPYLVLPVSKTGG 82 (289)
T ss_pred chHHHHhhcCchhhccCccCCCCeeEEEEEEC-CCcccHHHHHHHHHHHHHHHHHHc----CCCceeEEEEEEECCCCce
Confidence 3455555 3566665555554 589999996 599999999999999999999876 4899999999999999999
Q ss_pred eeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcC--CchHHH
Q 000483 1188 ILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFL--QPAYWF 1265 (1464)
Q Consensus 1188 lIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~--~~~~w~ 1265 (1464)
+||||+|++|++++.... .+.+++||.+.|. ++..|+
T Consensus 83 lIE~V~ns~tl~~i~~~~-----------------------------------------~~~l~~~~~~~~~~~~~~~~~ 121 (289)
T cd00893 83 IIEFIPNSISIHEIKKQQ-----------------------------------------INSLYDYFLELYGSYTTEAFL 121 (289)
T ss_pred eEEEeCCchhHHHHHHhc-----------------------------------------cccHHHHHHHHcCCCCcHHHH
Confidence 999999999999986421 1235677888887 467899
Q ss_pred HHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeecccccccccCC-CCCCCCCccccccccccccccccc-
Q 000483 1266 EKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-KTPERVPFRLTRDIIDGMGVTGVE- 1343 (1464)
Q Consensus 1266 ~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~~l-~~pE~VPFRLT~niv~~mG~~g~e- 1343 (1464)
.+|.+|++|+|++||+||||||||||++|||||+ +|+++|||||++|+.++.. ..||+||||||++|+++||+.|.+
T Consensus 122 ~a~~nF~~SlA~ySvv~YiLgigDRH~~NILid~-~G~liHIDFG~ilg~~p~~~~~~E~~PFrLT~emv~~mGg~~s~~ 200 (289)
T cd00893 122 QARYNFIESMAGYSLLCYLLQIKDRHNGNILLDS-DGHIIHIDFGFILDSSPGNNLGFEPAAFKFTKEMVDFMGGKKSDD 200 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCceEECC-CCCEEEEehHHhhCcCCcCCCCCCCCCeeecHHHHHHhCCCCChh
Confidence 9999999999999999999999999999999996 9999999999999998654 557999999999999999999987
Q ss_pred -chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000483 1344 -GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1380 (1464)
Q Consensus 1344 -G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1380 (1464)
|.|+.+|+.++.+||++.+.|++++++|+++|+.+|.
T Consensus 201 f~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~ 238 (289)
T cd00893 201 FKKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPCFR 238 (289)
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcccC
Confidence 7899999999999999999999999999999999884
No 24
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=1.5e-47 Score=442.02 Aligned_cols=263 Identities=18% Similarity=0.294 Sum_probs=215.8
Q ss_pred chhhhhhhcccccccccccccCCCCCCcccCCCccccccccceEEEecCCCCceEEEEEcCC--CceeeEEEecCccchh
Q 000483 1068 LPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLR 1145 (1464)
Q Consensus 1068 ~~~~l~~l~~l~~~p~~t~~lp~~~~~~y~~~~~~~i~~f~~~~~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~G~dDlR 1145 (1464)
+.+.+..++... ..++..+|++|..... + + ..+.++|++|+++|+++++.++| |+.|.+|+|.| ||||
T Consensus 33 l~~~~~~l~~~~--~~~~~~lPl~p~~~~~-~-~-----~~~~c~v~~S~~~Pl~l~f~~~d~~g~~~~~ifK~g-DDLR 102 (353)
T cd05176 33 LQEGMERVQSFF--QKNKCRLPLSPSLVAK-E-L-----NIKVCSFFSSNAVPLKIALVNADPLGEEINVMFKVG-EDLR 102 (353)
T ss_pred HHHHHHHHHhhc--CCCCCCCCCCcceeEc-c-E-----ehheeEEecccCCceEEEEEccCCCCCEEEEEEeCC-CCcc
Confidence 444444444332 1235678888853221 1 1 23568999999999999999999 99999999975 9999
Q ss_pred HHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHH
Q 000483 1146 QDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKC 1225 (1464)
Q Consensus 1146 qD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~ 1225 (1464)
||++++|++++||++|++.. .+|.+++|+|+|+++++|+||||||+.|+++|..... ....+
T Consensus 103 QD~l~lQli~lmd~i~~~~~----ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~~----~~~~~---------- 164 (353)
T cd05176 103 QDMLALQMIKIMDKIWLQEG----LDLRMVIFKCLSTGKDRGMVELVPASETLRKIQVEYG----VTGSF---------- 164 (353)
T ss_pred HHHHHHHHHHHHHHHHHHCC----CCeEEEEEEEEEcCCCceEEEEeCCcHhHHHHHHHhC----cCCcc----------
Confidence 99999999999999999764 7899999999999999999999999999999875321 10010
Q ss_pred HhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEE
Q 000483 1226 REHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVV 1305 (1464)
Q Consensus 1226 r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~ 1305 (1464)
. ...+.+|+...+|++.+|..+|.+|++|+|+||++||||||||||++||||+ .+|+++
T Consensus 165 --------------~------~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsv~tYiLGIgDRHn~NILi~-~~Ghl~ 223 (353)
T cd05176 165 --------------K------DKPLAEWLRKYNPAEEEYEKASENFIYSCAGCCVATYVLGICDRHNDNIMLR-STGHMF 223 (353)
T ss_pred --------------c------cchHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhhhccccCcCCcceEEc-CCCCEE
Confidence 0 0135678888888889999999999999999999999999999999999999 599999
Q ss_pred EeecccccccccCC--CCCCCCCcccccccccccccccc----cchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCccc
Q 000483 1306 HIDLGVAFEQGLML--KTPERVPFRLTRDIIDGMGVTGV----EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKW 1379 (1464)
Q Consensus 1306 hIDfg~~f~~g~~l--~~pE~VPFRLT~niv~~mG~~g~----eG~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W 1379 (1464)
|||||++|+.++.+ ..||+||||||++|+++||..+. -..|+..|..++.+||++.+.|++++++|+.-.+.+.
T Consensus 224 HIDFG~ilg~~~~~g~~~~e~~PFkLT~emv~~mgG~~~~s~~f~~F~~lc~~af~~LRk~~~~il~L~~lM~~s~iP~~ 303 (353)
T cd05176 224 HIDFGKFLGHAQMFGSFKRDRAPFVLTSDMAYVINGGEKPTIRFQLFVDLCCQAYNLIRKHSNLFLNLLSLMTQSGLPEL 303 (353)
T ss_pred EEeeHHhcCCCccccCCCCCCCCeeecHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCccc
Confidence 99999999988754 35899999999999999984321 1359999999999999999999999999987666554
No 25
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=100.00 E-value=7e-48 Score=448.45 Aligned_cols=250 Identities=26% Similarity=0.382 Sum_probs=207.6
Q ss_pred ccccCCCCCCcccCCCcccccccc-ceEEEecCCCCceEEEEEcC--CCceeeEEEecCccchhHHHHHHHHHHHHHHHH
Q 000483 1085 TATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGS--DGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1161 (1464)
Q Consensus 1085 t~~lp~~~~~~y~~~~~~~i~~f~-~~~~v~~s~~~Pk~i~~~gs--dG~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL 1161 (1464)
...+|++|+. .+.++. ++++|++|+++|++|++.+. +|..|.+|+|.| ||||||++++|++++||++|
T Consensus 52 ~~~lPldP~~--------~v~~i~~~~~~v~~S~~~Pl~l~f~~~~~~g~~~~~IfK~g-DDLRQD~l~lQli~lm~~i~ 122 (362)
T cd05173 52 DLQSPLNPSI--------ILSELNVEKCKYMDSKMKPLWIVYNNKLFGGDSLGIIFKNG-DDLRQDMLTLQILRLMDTLW 122 (362)
T ss_pred CCCCCCCCce--------EEEEEEcCceEEecccCCCeEEEEeecCCCCCEEEEEEeCC-CchhHHHHHHHHHHHHHHHH
Confidence 3457777753 233443 45999999999999999764 799999999965 99999999999999999999
Q ss_pred hhCcccccCCceeccceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHH
Q 000483 1162 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1241 (1464)
Q Consensus 1162 ~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~ 1241 (1464)
++.. ++|.+++|+|+|+++++|+||||+|+.|+++|....... +. ...|.
T Consensus 123 k~~~----ldL~l~pY~vi~t~~~~GlIE~V~ns~tl~~I~~~~~~~-~~------------------------~~~f~- 172 (362)
T cd05173 123 KEAG----LDLRIVPYGCLATGDRSGLIEVVSSAETIADIQLNSSNV-AA------------------------AAAFN- 172 (362)
T ss_pred HHCC----CCeeeEEEEEEEccCCceEEEEeCCchhHHHHHHhcccc-ch------------------------hcccC-
Confidence 9864 889999999999999999999999999999987431100 00 00111
Q ss_pred HHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeecccccccc--cCC
Q 000483 1242 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQG--LML 1319 (1464)
Q Consensus 1242 i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g--~~l 1319 (1464)
.+.+.+||.+.++ +..|..++.+|++|+|+|||+||||||||||++||||+ .+|+++|||||++|+.. +..
T Consensus 173 -----~~~l~~~l~~~~~-~~~~~~a~~nF~~S~AgYsvvtYILGIGDRHn~NILi~-~~G~l~HIDFG~ilg~~~~~~~ 245 (362)
T cd05173 173 -----KDALLNWLKEYNS-GDDLERAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVR-KNGQLFHIDFGHILGNFKSKFG 245 (362)
T ss_pred -----hhHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEEehHHhhccCCcccC
Confidence 1246778776543 34677789999999999999999999999999999999 59999999999999974 334
Q ss_pred CCCCCCCcccccccccccc--ccc---ccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000483 1320 KTPERVPFRLTRDIIDGMG--VTG---VEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1380 (1464)
Q Consensus 1320 ~~pE~VPFRLT~niv~~mG--~~g---~eG~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1380 (1464)
..||+||||||++|+++|| ..| .+|.|+.+|+.++.+||+|.+.|++++++|+..++.++.
T Consensus 246 ~~~E~vPFkLT~emv~vm~~G~~g~s~~~~~F~~~c~~a~~~LRk~~~lil~l~~lM~~s~ip~~~ 311 (362)
T cd05173 246 IKRERVPFILTYDFIHVIQQGKTGNTEKFGRFRQYCEDAYLILRKNGNLFITLFALMLTAGLPELT 311 (362)
T ss_pred CCCCCCCeeecHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccc
Confidence 5699999999999999985 333 468999999999999999999999999999998887764
No 26
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=100.00 E-value=7.8e-49 Score=442.94 Aligned_cols=229 Identities=42% Similarity=0.772 Sum_probs=177.5
Q ss_pred eeeEEEecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCC
Q 000483 1132 KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGA 1211 (1464)
Q Consensus 1132 ~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~ 1211 (1464)
.|+||+|. +||+|||+|+||+|+++|.+|.+++++++ +++|.|+|+++++||||||+++.||.+++.......+.
T Consensus 1 ~y~~l~K~-~dDlr~D~~~~ql~~~~n~~l~~~~~~~~----~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~ 75 (235)
T PF00454_consen 1 EYSFLVKG-GDDLRQDERVMQLFRLMNRILKKEGETRE----IRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGH 75 (235)
T ss_dssp -EEEEEEE-SS-CHHHHHHHHHHHHHHHHHHHTT-------------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTT
T ss_pred CceEEEEC-CchhhchhHHHHHHHHHHHHHhcCCCCce----EEEeEEEecCCCCceeEEeccccchhHhhccccccccc
Confidence 49999995 59999999999999999999999987765 99999999999999999999999999999764432222
Q ss_pred CCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhh-hhhhHHHHHHHHcCCchHHHHHHHHHHHhhcccchhhheeccCCC
Q 000483 1212 HGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCEN-FRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDR 1290 (1464)
Q Consensus 1212 ~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~-~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyilgLGDR 1290 (1464)
...+.... .+...+...+.. ..+.+.+||++.++++++|+.+|++|++|+|++|+++||||+|||
T Consensus 76 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDR 141 (235)
T PF00454_consen 76 SNDNPSRK--------------YKAKLFEKQSSKVPKDGLRQYFLKSFPSAEEWFEARKNFTRSLAAYSILDYILGLGDR 141 (235)
T ss_dssp TCSC--------------------------------TTHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS-
T ss_pred cccccccc--------------cccccccccccccccchHHHHHHhcCCChhhhHhhhHhhHHHHHHHhhceEEEeecCC
Confidence 11110000 000012222333 334899999999999999999999999999999999999999999
Q ss_pred CCCeeEEecCCCeEEEeecccccccccCCCCCCCCCccccccccccc----ccccccchhHHHHHHHHHHHhcChHHHHH
Q 000483 1291 HAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGM----GVTGVEGVFRRCCEKTLSVMRTNKEALLT 1366 (1464)
Q Consensus 1291 H~~NILld~~tG~v~hIDfg~~f~~g~~l~~pE~VPFRLT~niv~~m----G~~g~eG~F~~~~~~t~~~Lr~~~~~l~~ 1366 (1464)
||+||||+..||+++|||||++|+ ++.+++||.|||||||||+++| |+.|++|.|+.+|+.++++||++++.|++
T Consensus 142 h~~Nili~~~~g~~~hIDfg~~f~-~~~~~~~e~vPFrLT~~~~~~~~~~l~~~~~~g~f~~~~~~~~~~lr~~~~~l~~ 220 (235)
T PF00454_consen 142 HPGNILIDKKTGELIHIDFGFIFG-GKHLPVPETVPFRLTRNMVNAMGGYLGPSGVEGLFRSSCEAILRALRRNKDLLLS 220 (235)
T ss_dssp -TTTEEE-ETTSEEEE--HSSCTT-HHHGSSSS--SSTTHHHHHHHTTTSSSTSHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CchhheeccccceeeeEEeHHhhh-ccccCCCCCCCeEeCHHHHHHHhccCCCchhHhHHHHHHHHHHHHHhcChHHHHH
Confidence 999999999999999999999999 8888999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHccCCCcccc
Q 000483 1367 IVEVFIHDPLYKWA 1380 (1464)
Q Consensus 1367 iL~~f~~DpL~~W~ 1380 (1464)
+|++|++||+++|+
T Consensus 221 ll~~~~~d~l~~w~ 234 (235)
T PF00454_consen 221 LLELFLRDPLIDWR 234 (235)
T ss_dssp HHHHTTTSCSTTSS
T ss_pred HHHHHHhCCCCCCC
Confidence 99999999999996
No 27
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=100.00 E-value=5.7e-47 Score=434.01 Aligned_cols=270 Identities=23% Similarity=0.324 Sum_probs=222.8
Q ss_pred cceEEEecCC-CCceEEEEEcCCCc-------------eeeEEEecCccchhHHHHHHHHHHHHHHHHhhCcccccCCce
Q 000483 1108 AESVMVMNGI-NAPKVVECFGSDGH-------------KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLG 1173 (1464)
Q Consensus 1108 ~~~~~v~~s~-~~Pk~i~~~gsdG~-------------~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~ 1173 (1464)
.++++++.|+ .+|.++++...|+. .|..++|.| ||||||++++|++++||.+|++.. ++|.
T Consensus 15 ~~~~~~~~S~ak~P~~l~F~~~~~~~~~~~~~~~~~~~~~~~IfK~g-DDLRQD~l~~Qli~lm~~i~~~~~----ldl~ 89 (311)
T cd05167 15 YKSGTPLQSHAKAPILVTFKVKDRGGDELEEVDDGKVSWQACIFKVG-DDCRQDMLALQLISLFKNIFQSAG----LDLY 89 (311)
T ss_pred ccccEEeccCCCCceEEEEEecCCCccccccccccccceEEEEEeCC-CCccHHHHHHHHHHHHHHHHHHCC----CCeE
Confidence 3568999997 57999999987764 489999965 999999999999999999999764 8999
Q ss_pred eccceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHH
Q 000483 1174 VRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYF 1253 (1464)
Q Consensus 1174 i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~ 1253 (1464)
+++|+|+|+++++|+||||+|+.|+++|... ..+.+.+|
T Consensus 90 l~~Y~vi~t~~~~GlIE~V~ns~s~~~i~~~-----------------------------------------~~~~l~~~ 128 (311)
T cd05167 90 LFPYRVVATGPGCGVIEVVPNSKSRDQIGRT-----------------------------------------TDNGLYEY 128 (311)
T ss_pred eEEEeEEecCCCceEEEEeCCcHHHHHHHhh-----------------------------------------cccHHHHH
Confidence 9999999999999999999999999986321 01246788
Q ss_pred HHHHcCC--chHHHHHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeecccccccccCC-CCCCCCCcccc
Q 000483 1254 FLERFLQ--PAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-KTPERVPFRLT 1330 (1464)
Q Consensus 1254 f~~~f~~--~~~w~~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~~l-~~pE~VPFRLT 1330 (1464)
|.+.|.+ +..|..+|.+|++|+|+|||+||||||||||++|||||. +|+++|||||++|+.++.- ..+|+||||||
T Consensus 129 f~~~~~~~~~~~~~~a~~nF~~S~Agysv~tYiLgigDRHn~NILid~-~G~l~HIDFG~il~~~p~~~~~~E~~PFkLT 207 (311)
T cd05167 129 FTSKYGDESSLAFQKARENFIRSMAAYSLISYLLQIKDRHNGNIMIDD-DGHIIHIDFGFIFEISPGGNLKFESAPFKLT 207 (311)
T ss_pred HHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCccceEEcC-CCCEEEEeeHHhhccCCCCCCCcCCCCEeec
Confidence 8888865 479999999999999999999999999999999999997 9999999999999987532 35799999999
Q ss_pred cccccccccccccc---hhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhHHHhhhhcccccccCCCCCCccc
Q 000483 1331 RDIIDGMGVTGVEG---VFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDE 1407 (1464)
Q Consensus 1331 ~niv~~mG~~g~eG---~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1407 (1464)
++|+++||+.+.+| .|+..|..++.+||++.+.|++++++|+..++.++.
T Consensus 208 ~emv~~mGg~~~s~~f~~F~~~~~~~~~~lR~~~~~il~l~~lm~~s~lp~~~--------------------------- 260 (311)
T cd05167 208 KEMVQIMGGSMEATPFKWFVELCVRAFLAVRPYMDEIVSLVELMLDSGLPCFR--------------------------- 260 (311)
T ss_pred HHHHHHhCCCCcchhHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCchhhh---------------------------
Confidence 99999999988765 677789999999999999999999999877665542
Q ss_pred cccchhHHHHHHHHHhhhcCCCCCCCcCHHHHHHHHHHHccCchhhhhhCcccc
Q 000483 1408 YEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFPGWG 1461 (1464)
Q Consensus 1408 ~~~n~~a~~~l~rv~~KL~g~~~~~~lsv~~qV~~LI~~Atd~~NLa~m~~gW~ 1461 (1464)
..++..+++|+.-..+ ..-...++..||+.|.+. --.++|-.|+
T Consensus 261 -------~~~i~~l~~rf~l~~s--e~~a~~~~~~lI~~s~~~-~~t~~yD~~q 304 (311)
T cd05167 261 -------GDTIKNLRQRFAPEKS--EREAAEFMLSLIAESYEK-FRTKGYDQFQ 304 (311)
T ss_pred -------HHHHHHHHHHhCCCCC--HHHHHHHHHHHHHHHHhc-hhHHHHHHHH
Confidence 1246667777743111 123566889999999874 2224444443
No 28
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=100.00 E-value=1.3e-44 Score=417.87 Aligned_cols=246 Identities=20% Similarity=0.339 Sum_probs=210.6
Q ss_pred ccccCCCCCCcccCCCccccccc-cceEEEecCCCCceEEEEEcCC--CceeeEEEecCccchhHHHHHHHHHHHHHHHH
Q 000483 1085 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1161 (1464)
Q Consensus 1085 t~~lp~~~~~~y~~~~~~~i~~f-~~~~~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL 1161 (1464)
+..+|++|+... .++ .++++|+.|+.+|.++++.+.| |..|.+++|.| ||||||+.++|++++||++|
T Consensus 49 ~~~lPldP~~~v--------~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~G-DDLRQD~l~lQli~lmd~i~ 119 (354)
T cd00895 49 SCRLPLSPSLLV--------KGIVPRDCSYFNSNAVPLKLSFQNVDPLGENIRVIFKCG-DDLRQDMLTLQMIRIMNKIW 119 (354)
T ss_pred CCcCCCCCCeEE--------EEEEcCceEEecccCCCeEEEEEecCCCCCeEEEEEeCC-CCccHHHHHHHHHHHHHHHH
Confidence 467888885432 222 3568999999999999999999 89999999987 99999999999999999999
Q ss_pred hhCcccccCCceeccceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHH
Q 000483 1162 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1241 (1464)
Q Consensus 1162 ~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~ 1241 (1464)
++.. .+|.+++|+|+|+++++|+||||||+.|+++|.... |....+.
T Consensus 120 ~~~~----ldl~l~pY~vl~tg~~~G~IE~V~ns~tl~~I~~~~----g~~g~~~------------------------- 166 (354)
T cd00895 120 VQEG----LDMRMVIFRCFSTGRGRGMVEMIPNAETLRKIQVEH----GVTGSFK------------------------- 166 (354)
T ss_pred HHcC----CCceEEEEEEEecCCCceEEEEeCChhhHHHHHHHh----CcCcccc-------------------------
Confidence 9875 789999999999999999999999999999997531 1111110
Q ss_pred HHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeecccccccccCC--
Q 000483 1242 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-- 1319 (1464)
Q Consensus 1242 i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~~l-- 1319 (1464)
...+.+||.+.+|++..|..+|.+|++|+|+||++|||||+||||++||||+ .+|+++|||||++|+.++.+
T Consensus 167 -----~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLgIgDRHndNImi~-~~GhlfHIDFG~iLg~~~~~g~ 240 (354)
T cd00895 167 -----DRPLADWLQKHNPTEDEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLK-TTGHMFHIDFGRFLGHAQMFGN 240 (354)
T ss_pred -----cchHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHccccccCCCceeEc-CCCCEEEEeeHHhcCCCcccCC
Confidence 0136788988899999999999999999999999999999999999999999 59999999999999987543
Q ss_pred CCCCCCCccccccccccccccccc----chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcc
Q 000483 1320 KTPERVPFRLTRDIIDGMGVTGVE----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYK 1378 (1464)
Q Consensus 1320 ~~pE~VPFRLT~niv~~mG~~g~e----G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~ 1378 (1464)
..+|++||+||++|+++||..|.+ ..|+..|..++.+||+|.+.|++++++|+.-.+.+
T Consensus 241 ~~re~~PF~Lt~emv~vm~gg~~~S~~f~~F~~lc~~ay~~lRk~~~~il~L~~lM~~sgiP~ 303 (354)
T cd00895 241 IKRDRAPFVFTSDMAYVINGGDKPSSRFHDFVDLCCQAYNLIRKHTHLFLNLLGLMLSCGIPE 303 (354)
T ss_pred CCcCCCCccccHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCcc
Confidence 358999999999999999753432 36999999999999999999999999998654443
No 29
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=5.9e-44 Score=412.43 Aligned_cols=247 Identities=23% Similarity=0.376 Sum_probs=205.7
Q ss_pred ccccCCCCCCcccCCCccccccc-cceEEEecCCCCceEEEEEcCCC------ceeeEEEecCccchhHHHHHHHHHHHH
Q 000483 1085 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDG------HKYRQLAKSGNDDLRQDAVMEQFFGLV 1157 (1464)
Q Consensus 1085 t~~lp~~~~~~y~~~~~~~i~~f-~~~~~v~~s~~~Pk~i~~~gsdG------~~y~~L~K~G~dDlRqD~r~~Qlf~li 1157 (1464)
.+.+|++|+.. +.++ .++++|++|+.+|.+|++.++|| ..|..++|.| ||||||++++|++++|
T Consensus 52 ~~~lPl~P~~~--------~~~i~~e~c~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~~IfK~G-DDLRQD~l~lQli~lm 122 (366)
T cd05175 52 GFTSPLNPAHQ--------LGNLRLEECRIMSSAKRPLWLNWENPDIMSELLFQNNEIIFKNG-DDLRQDMLTLQIIRIM 122 (366)
T ss_pred CCCCCCCCceE--------EEEEEeccceeechhcCCeEEEEEcCCcccccccCCcceEEeCC-CCccHHHHHHHHHHHH
Confidence 45678887532 3333 34689999999999999999998 4699999976 9999999999999999
Q ss_pred HHHHhhCcccccCCceeccceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHH
Q 000483 1158 NTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRI 1237 (1464)
Q Consensus 1158 N~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~ 1237 (1464)
|.+|++.. .+|++++|+|+|+++++|+||||+|+.|+++|.... +....+
T Consensus 123 d~i~~~~~----ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~----~~~~~~---------------------- 172 (366)
T cd05175 123 ENIWQNQG----LDLRMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKG----GLKGAL---------------------- 172 (366)
T ss_pred HHHHHHCC----CCeEEEEEEEEEecCCceEEEEcCCchhHHHHHhcc----cccccc----------------------
Confidence 99999865 899999999999999999999999999999986431 100000
Q ss_pred HHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeeccccccccc
Q 000483 1238 AFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL 1317 (1464)
Q Consensus 1238 ~f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~ 1317 (1464)
.| -.+.+++|+.+.++ .+.|..+|.+|++|+|+||++||||||||||++||||+. +|+++|||||++|+.++
T Consensus 173 ~~------~~~~l~~~l~~~~~-~~~~~~a~~nF~~S~AgYsV~tYiLGIgDRHndNImi~~-~G~l~HIDFG~iLg~~p 244 (366)
T cd05175 173 QF------NSHTLHQWLKDKNK-GEMYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVKD-DGQLFHIDFGHFLDHKK 244 (366)
T ss_pred cc------CchhHHHHHhhcCC-cHHHHHHHHHHHHHHHHHHHHHHHhcccccCccceeEcC-CCCEEEEehHHhhcCCC
Confidence 00 01356677777665 457889999999999999999999999999999999995 99999999999999876
Q ss_pred C-C-CCCCCCCccccccccccccccc-----cc--chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcc
Q 000483 1318 M-L-KTPERVPFRLTRDIIDGMGVTG-----VE--GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYK 1378 (1464)
Q Consensus 1318 ~-l-~~pE~VPFRLT~niv~~mG~~g-----~e--G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~ 1378 (1464)
. + ..||+||||||++|+..||.-+ .+ +.|+..|..++.+||++.+.|+++++.++.-.+.+
T Consensus 245 ~~~~~~~E~~PFkLT~emv~v~~gg~~~~~~s~~f~~F~~lc~~ay~~lRk~~~~ii~L~~lM~~sgiP~ 314 (366)
T cd05175 245 KKFGYKRERVPFVLTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPE 314 (366)
T ss_pred ccCCCCCCCCCeEecHHHHHHhccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 4 4 4699999999999999997432 23 58999999999999999999999999997655544
No 30
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-36 Score=366.19 Aligned_cols=415 Identities=18% Similarity=0.245 Sum_probs=305.5
Q ss_pred HHHHHHHHhccCCCccHHHHHHHHHHhhhc------------CchHHHHHHHHHhhhcccccchhhhhhhhhccccCCcc
Q 000483 897 ALEGYKRCLVIGDKYDVRVVFRLVSLWFSL------------SSRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKD 964 (1464)
Q Consensus 897 Al~~Yl~sL~~~~~~~~~~~~RllsLWl~~------------~~~~~v~~~~~~~l~~vPs~kfl~~ipQL~sRL~~~~~ 964 (1464)
|+---|.|....+....-++.-+|-=|=.. ..+.+|.+...+.+.+++....+..+|||+..|.+.-
T Consensus 859 aLPlVL~Sap~W~~~~l~~~y~lL~~Wa~l~Pl~ALelL~~kfPDqeVR~~AVqwi~~ls~DeL~d~LPQlVQALK~E~- 937 (1639)
T KOG0905|consen 859 ALPLVLASAPSWDWGNLMDVYQLLHQWAPLRPLIALELLLPKFPDQEVRAHAVQWIARLSNDELLDYLPQLVQALKFEL- 937 (1639)
T ss_pred hhHHHHhcCCCCchhhHHHHHHHHHhccccCHHHHHHhhcccCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH-
Confidence 444445555544544454566666666544 3456788999999999999999999999999999853
Q ss_pred ccccccHHHHHHHHHHHHHHhCCc--hhhhhHhhccccccchhhhccccchhhhhhHHHHHHHHHHHHHhHH----HHHH
Q 000483 965 ALGLHNFQFALVSLVKKMAIDHPY--HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSYH----GAII 1038 (1464)
Q Consensus 965 ~~~~~~f~~~L~~Ll~~i~~~hP~--~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~il~~l~~~~----~~~~ 1038 (1464)
...+.|.++|...+...++ |-+|+++.-.-.+. .-..|. +.++..+-... .+-+
T Consensus 938 -----yl~S~Lv~FLL~rsl~sl~~ah~lYWlLk~~l~d~---qfs~rY------------q~ll~aLl~~~gk~L~~ef 997 (1639)
T KOG0905|consen 938 -----YLKSALVQFLLSRSLVSLQFAHELYWLLKDALDDS---QFSLRY------------QNLLAALLDCCGKNLREEF 997 (1639)
T ss_pred -----hccCHHHHHHHHHHhcchHHHHHHHHHHhhccccc---eeehHH------------HHHHHHHHHHhCHHHHHHH
Confidence 2336788999888888777 44555554221110 001111 22222222111 1112
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhcccccccccccccCCCCCCcccCCCccccccccceEEEecCCC
Q 000483 1039 RQMKQMVDVYIKLAELETRREQDTNKRIQLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAESVMVMNGIN 1118 (1464)
Q Consensus 1039 ~~~~~l~~~~~~la~~~~~~~~~~~~~~~~~~~l~~l~~l~~~p~~t~~lp~~~~~~y~~~~~~~i~~f~~~~~v~~s~~ 1118 (1464)
..-++|++.+..+|+...... ...+...+.+.+..+.+- ..-.+|..||+.|...... +.| ..+.+++|..
T Consensus 998 ~~Q~~Lv~~L~~iae~Vr~as-~s~Rq~vL~~~l~~v~~f-f~~n~tcrLPL~Pal~vkG---v~i----~~CSyFnSNA 1068 (1639)
T KOG0905|consen 998 KKQHKLVNELGSIAEDVRSAS-GSARQHVLRTGLGRVDSF-FLQNNTCRLPLCPALDVKG---VRI----RECSYFNSNA 1068 (1639)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHhHHHHHHH-HHhCCceecccCchheecc---ccc----cccccccCCC
Confidence 223567777777777432221 122222333333333221 1223466788877543221 111 4578899999
Q ss_pred CceEEEEEc--CCCceeeEEEecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceeEEcCCCC
Q 000483 1119 APKVVECFG--SDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTV 1196 (1464)
Q Consensus 1119 ~Pk~i~~~g--sdG~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~ 1196 (1464)
.|-+|+|+| -+|+.++.++|.| ||||||+.++|++++||++|.++. .+|.+-+|+++|.+-+.|++|-|+|+.
T Consensus 1069 ~PLKitFvnadp~geni~iIfK~g-DDLRQDml~lQmI~iMdkIWl~eg----LDlrMViFrc~stG~~rgMvElVp~a~ 1143 (1639)
T KOG0905|consen 1069 LPLKITFVNADPLGENISIIFKCG-DDLRQDMLVLQMIRIMDKIWLQEG----LDLRMVIFRCLSTGYDRGMVELVPNAE 1143 (1639)
T ss_pred cceEEEEecCCCccccceeeeecC-chHHHHHHHHHHHHHHHHHHHhcC----CceeEEEEEeecccccccceeecccHH
Confidence 999999999 7799999999987 999999999999999999999886 899999999999999999999999999
Q ss_pred chHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhc
Q 000483 1197 PLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVA 1276 (1464)
Q Consensus 1197 tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A 1276 (1464)
||++|...+. ..+-+. | -.+.+|+.+..|++.++-.+-.||+.|||
T Consensus 1144 TLrKIQve~G----ltGsfk--D----------------------------~pla~WL~KhNp~e~eYekA~eNFiySCA 1189 (1639)
T KOG0905|consen 1144 TLRKIQVEEG----LTGSFK--D----------------------------RPLAKWLMKHNPSEFEYEKAVENFIYSCA 1189 (1639)
T ss_pred HHHHHHHHhc----cccccc--c----------------------------chHHHHHHhcCCCHHHHHHHHHHHHHhcc
Confidence 9999886533 211110 0 03678999999999999999999999999
Q ss_pred ccchhhheeccCCCCCCeeEEecCCCeEEEeecccccccccCCC--CCCCCCcccccccccccccccc----cchhHHHH
Q 000483 1277 ASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLK--TPERVPFRLTRDIIDGMGVTGV----EGVFRRCC 1350 (1464)
Q Consensus 1277 ~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~~l~--~pE~VPFRLT~niv~~mG~~g~----eG~F~~~~ 1350 (1464)
.+|+++||||++|||.+|||+.+ ||++||||||-..+...++. ...++||-+|-+|..++..-+- ...|...|
T Consensus 1190 G~cVaTYVLGIcDRHNDNIMl~~-sGHmFHIDFGKFLGhaQMfg~fKRDRaPFVfTSdMayvINgG~kpt~~fq~FVDlC 1268 (1639)
T KOG0905|consen 1190 GWCVATYVLGICDRHNDNIMLTK-SGHMFHIDFGKFLGHAQMFGGFKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLC 1268 (1639)
T ss_pred cceeeeEeeecccccCCceEEec-cCcEEEEehhhhcchHHHhcccccccCCeEEeccchhhhcCCCCCchHHHHHHHHH
Confidence 99999999999999999999995 99999999999988765543 4789999999999999975443 35799999
Q ss_pred HHHHHHHhcChHHHHHHHHHHccCCCccccc
Q 000483 1351 EKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1381 (1464)
Q Consensus 1351 ~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~ 1381 (1464)
..++..+|+|.+.++++|..|+.-.+..-..
T Consensus 1269 CrAyNiiRK~t~lllnlL~lM~~agiPeln~ 1299 (1639)
T KOG0905|consen 1269 CRAYNIIRKNTNLLLNLLRLMACAGIPELNS 1299 (1639)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCCCCccc
Confidence 9999999999999999999999988876543
No 31
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-35 Score=343.87 Aligned_cols=418 Identities=21% Similarity=0.351 Sum_probs=284.9
Q ss_pred HHHHHHHHHHhccCCCccHHHHHHHHHHhhhcCc------------hHHHHHHHHHhhhcccccchhhhhhhhhccccCC
Q 000483 895 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 962 (1464)
Q Consensus 895 ~~Al~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~------------~~~v~~~~~~~l~~vPs~kfl~~ipQL~sRL~~~ 962 (1464)
.+|+..|++|..+.+......+++++-=|=+..- ++.|.......+.....-..+-.++||+..++..
T Consensus 308 kKALtK~L~sv~W~~~qe~kqal~lM~~W~~id~~dalellss~f~~~sVrayavsrl~~a~deelllYL~qlvqal~ye 387 (843)
T KOG0906|consen 308 KKALTKFLRSVNWRDPQEVKQALALMDKWEEIDVEDALELLSSYFTHPSVRAYAVSRLKGADDEELLLYLLQLVQALKYE 387 (843)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHhhccccchhhhhhhhccccccCHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 5799999999999988766568888888876642 2456666666666666666777788888777664
Q ss_pred c----cc--------ccc---------------------------ccHHHHHHHHHHHHHHhCCc---hhhhhHhhcccc
Q 000483 963 K----DA--------LGL---------------------------HNFQFALVSLVKKMAIDHPY---HTIFQLLALANG 1000 (1464)
Q Consensus 963 ~----~~--------~~~---------------------------~~f~~~L~~Ll~~i~~~hP~---~~l~~l~~~~~~ 1000 (1464)
+ .+ .+. ....+-|..+|++.|...|+ ...|.+.+....
T Consensus 388 ~~~~~p~~~~~~~v~s~~~~si~s~~t~pl~s~ss~~~ts~tke~p~~~s~La~fLi~Ral~n~~l~nflywyl~~e~Ed 467 (843)
T KOG0906|consen 388 NGQQLPEEGNPVPVVSEREGSIPSVATTPLESLSSRDMTSTTKEAPKAASDLATFLISRALVNPQLANFLYWYLKVEIED 467 (843)
T ss_pred hhccCCcccCcCcccccccccccccccCccccccCCCccccccccccccchHHHHHHHHHhcCccccceEEEEEEEEecC
Confidence 4 10 000 00112467778887887787 223444333222
Q ss_pred ccchhhhccccchhhhhhHHHHHHHHHHHHHh--HHH---HHHHHHHHHHHHHHHHHHHHhccccccccccc-chhhhhh
Q 000483 1001 DRIKDKQRSRNSFVVDMDKKLAAENLLEELSS--YHG---AIIRQMKQMVDVYIKLAELETRREQDTNKRIQ-LPREIRC 1074 (1464)
Q Consensus 1001 ~~~~~~~~~~~~~~~~~~~~~~a~~il~~l~~--~~~---~~~~~~~~l~~~~~~la~~~~~~~~~~~~~~~-~~~~l~~ 1074 (1464)
....+ +.. ......++.+++ ..+ ..+.+-..+++.++.+++.........++++. +..-|..
T Consensus 468 ~~~~k----ry~--------si~~~f~~~l~K~~d~r~~~~~L~~Q~~lVd~L~~i~~~v~~~~g~~~kK~e~L~~lL~~ 535 (843)
T KOG0906|consen 468 TPYSK----RYL--------SIMSSFLEALSKRPDGRAIRGSLEAQQALVDELRRIMKEVKRGSGRRKKKIERLRGLLGD 535 (843)
T ss_pred ChHHH----HHH--------HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHhc
Confidence 11100 000 011122222222 111 22333345666666666543322211112111 1111111
Q ss_pred hcccccccccccccCCCCCCcccCCCcccccccc-ceEEEecCCCCceEEEEEcCCCc-eeeEEEecCccchhHHHHHHH
Q 000483 1075 LRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSDGH-KYRQLAKSGNDDLRQDAVMEQ 1152 (1464)
Q Consensus 1075 l~~l~~~p~~t~~lp~~~~~~y~~~~~~~i~~f~-~~~~v~~s~~~Pk~i~~~gsdG~-~y~~L~K~G~dDlRqD~r~~Q 1152 (1464)
.+...+.-+-...+|.+|+. .|.++. ++.+++.|-..|-+|+|...+|. +|+.++|.| ||||||+.+.|
T Consensus 536 ~~~~~l~~~~~i~lpldp~v--------~i~~Iip~t~~~FkSsl~Pl~l~fkt~~g~g~y~vIFK~G-DDLrQDqlV~Q 606 (843)
T KOG0906|consen 536 HKHMNLLDVRLIALPLDPDV--------LIKGIIPDTASLFKSSLMPLKLTFKTDDGGGKYPVIFKKG-DDLRQDQLVLQ 606 (843)
T ss_pred ccccccccceeeccCCCCCc--------eEeeecCchhhhhhhccCceeEEEEecCCCCceeEEEecC-cchhHHHHHHH
Confidence 11111122223456777743 344433 45788999999999999999998 999999987 99999999999
Q ss_pred HHHHHHHHHhhCcccccCCceeccceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcch
Q 000483 1153 FFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNV 1232 (1464)
Q Consensus 1153 lf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~ 1232 (1464)
+.++|+.+|++.. .+|.+++|+|+|+++.-|++|+|++ .|+..|+.....
T Consensus 607 ii~lMd~LLkken----lDLkLtpYkVLatg~~eG~vefI~s-~~la~Ils~~~~------------------------- 656 (843)
T KOG0906|consen 607 IIRLMDRLLKKEN----LDLKLTPYKVLATGPKEGFVEFIPS-KPLARILSEYHS------------------------- 656 (843)
T ss_pred HHHHHHHHhcccc----ccccceeeEEeccCCCcccEEeecC-CcHHHHHHHHHH-------------------------
Confidence 9999999999876 7899999999999999999999987 888888753110
Q ss_pred HhHHHHHHHHHhhhhhhHHHHHHHHcCCc----hHHHHHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEee
Q 000483 1233 KDKRIAFQEVCENFRPVLHYFFLERFLQP----AYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHID 1308 (1464)
Q Consensus 1233 ~~k~~~f~~i~~~~~pvl~~~f~~~f~~~----~~w~~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hID 1308 (1464)
...|+.+..|+- ..=+..+.+|.+|||.+|+++||||+||||++|+|+.+ +|++||||
T Consensus 657 -----------------I~~ylke~~p~e~ap~gi~~~v~dnfVkScaGYsVitYILGvGDRhldNLllT~-dGk~FHiD 718 (843)
T KOG0906|consen 657 -----------------ILMYLKEDRPDENAPFGISPEVMDNFVKSCAGYSVITYILGVGDRHLDNLLLTK-DGKLFHID 718 (843)
T ss_pred -----------------HHHHHHhhCCCcCCCCCCChhHHHHHHHhhccceeeeeeecccCCCcCceEEcc-CCcEEEEe
Confidence 111222223321 23356788999999999999999999999999999996 99999999
Q ss_pred cccccccccCCCCCCCCCccccccccccccccccc--chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChh
Q 000483 1309 LGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE--GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPL 1384 (1464)
Q Consensus 1309 fg~~f~~g~~l~~pE~VPFRLT~niv~~mG~~g~e--G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~~~~ 1384 (1464)
||++|+.. |.|-+.|..|++.|+++||....+ -.|+..|..++..||++.+.|+++.++|+..-+.+....|.
T Consensus 719 FgyIlGRD---PKP~pp~MkL~kemve~mgg~es~~Yq~F~s~c~~Af~~LRRssnlIlnLf~LM~~~~IPDia~dp~ 793 (843)
T KOG0906|consen 719 FGYILGRD---PKPFPPPMKLAKEMVEGMGGAESKQYQEFRSYCYEAFLILRRSSNLILNLFSLMADANIPDIAFDPN 793 (843)
T ss_pred eeeeccCC---CCCCCCccccCHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCceeeCcc
Confidence 99999988 456678999999999999955442 47999999999999999999999999998776655544443
No 32
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=100.00 E-value=9e-35 Score=346.86 Aligned_cols=317 Identities=29% Similarity=0.393 Sum_probs=255.2
Q ss_pred hHHHHHHHHhcCCCCCcccccCCCCCCCcCcccchhhhhHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 000483 509 TKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEESTEY 588 (1464)
Q Consensus 509 ~~~~~eaAWrlg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~~L~al~~~d~~~f~~~i~~aR~~l~~~Ls~~s~ES~~~ 588 (1464)
+|+++|||||||+||.+..+... . .....+..+|+++.++++||++.|...|+++|..++.++++++.|||.+
T Consensus 1 ~~~~~eaaWrl~~Wd~l~~~~~~--~-----~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~ 73 (352)
T PF02259_consen 1 APLAAEAAWRLGDWDLLEEYLSQ--S-----NEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQR 73 (352)
T ss_pred ChHHHHHHHhcCChhhHHHHHhh--c-----cCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 58999999999999987664321 1 1122267789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHHHHHHHHHHhhhhchhhhhhHHHHHHH
Q 000483 589 IYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRV 668 (1464)
Q Consensus 589 ~y~~lvrLq~L~ELe~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~~~~~~~~~EpiL~~R~~ 668 (1464)
+|+.+++||+|.|||+++++...... ....+..+.+.|++|++.+++++++|+|||++|+.
T Consensus 74 ~y~~l~~lq~L~Elee~~~~~~~~~~-------------------~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~ 134 (352)
T PF02259_consen 74 AYPSLVKLQQLVELEEIIELKSNLSQ-------------------NPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRL 134 (352)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcc-------------------cHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999999996422210 12346789999999999999999999999999999
Q ss_pred HHHhcccchHHHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHH
Q 000483 669 LLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYI 748 (1464)
Q Consensus 669 vl~il~~~e~~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l 748 (1464)
+++++...++...+|+++|++|||+|++++|.++|.++..+....... .| ...+|+||++|++|++..||..|+.+
T Consensus 135 ~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-~~---~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 135 VLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-LP---RVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-Cc---chHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999777778899999999999999999999999999987654221111 12 34699999999999999999999888
Q ss_pred Hhh-ccC------------------------------CCchhHHHHHHHHHHHHh----hcCChHHHHHHhhhhhhhccc
Q 000483 749 SEN-YES------------------------------NEEAPDVYRLVGKWLAES----RSSNSRIILENYLKPAVSFSE 793 (1464)
Q Consensus 749 ~~~-~~~------------------------------~~~~a~~~~llG~wlae~----~~e~~~~I~~~Y~~~a~~~~~ 793 (1464)
+.+ ... ....++++.++|+|+.+. ..++.+++++.|.+ |+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~-a~~~~- 288 (352)
T PF02259_consen 211 LKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKE-ATKLD- 288 (352)
T ss_pred HHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH-HHHhC-
Confidence 762 110 123578999999999999 88899999988877 65442
Q ss_pred ccccchhHHHHhhhhhhhhHHHhHHHHHHhHHHHhhhHHHHHHHHHHHhhHHHHHHHHHHhhhcCcCccchhhHHHHHHH
Q 000483 794 DQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQ 873 (1464)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~lA~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (1464)
....++|+++|.|+|..+..... + ....
T Consensus 289 ----------~~~~k~~~~~a~~~~~~~~~~~~----~--------------------------~~~~------------ 316 (352)
T PF02259_consen 289 ----------PSWEKAWHSWALFNDKLLESDPR----E--------------------------KEES------------ 316 (352)
T ss_pred ----------hhHHHHHHHHHHHHHHHHHhhhh----c--------------------------cccc------------
Confidence 23467999999999998875210 0 0000
Q ss_pred HHHhhhHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCccHHHHHHHHH
Q 000483 874 KQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVS 921 (1464)
Q Consensus 874 ~~~~~d~~e~~~l~~~~~~fl~~Al~~Yl~sL~~~~~~~~~~~~Rlls 921 (1464)
. +..+..|+..||+||++|+.+|+++..+++||+||
T Consensus 317 ----------~--~~~~~~~~~~ai~~y~~al~~~~~~~~~~~~RlLt 352 (352)
T PF02259_consen 317 ----------S--QEDRSEYLEQAIEGYLKALSLGSKYVRQDLPRLLT 352 (352)
T ss_pred ----------c--hhHHHHHHHHHHHHHHHHHhhCCCchHHHhhHhcC
Confidence 0 02345799999999999999999999999999975
No 33
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-34 Score=343.05 Aligned_cols=419 Identities=21% Similarity=0.301 Sum_probs=292.3
Q ss_pred HHHHHHHHHHhccCCCccHHHHHHHHHHhhhcC------------chHHHHHHHHHhhhcccccchhhhhhhhhccccCC
Q 000483 895 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 962 (1464)
Q Consensus 895 ~~Al~~Yl~sL~~~~~~~~~~~~RllsLWl~~~------------~~~~v~~~~~~~l~~vPs~kfl~~ipQL~sRL~~~ 962 (1464)
..++---+.|+.+++.-+.-.+.-+|.-|=..+ .+..|.+...+++..+....+...+-||+.-|.+.
T Consensus 578 Pe~L~kLllsvkW~~redvAqmy~LL~~Wp~l~v~~aleLLd~nypD~~VR~fAV~~L~~Lsdd~l~~YLLqLVQalKyE 657 (1076)
T KOG0904|consen 578 PEALPKLLLSVKWNKREDVAQMYYLLKDWPPLSVELALELLDCNYPDPNVRAFAVRCLEQLSDDDLLQYLLQLVQALKYE 657 (1076)
T ss_pred hHHHHHHHheeeeccHHHHHHHHHHHhhCCCCCHHHHHHHhcCCCCcHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcc
Confidence 345555677777777655555777777775543 34567777788999999999999999999999984
Q ss_pred ccccccccHHHHHHHHHHHHHHhC---CchhhhhHhhccccccchhhhccccchhhhhhHHHHHHHHHHHHHhHHHHHHH
Q 000483 963 KDALGLHNFQFALVSLVKKMAIDH---PYHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSYHGAIIR 1039 (1464)
Q Consensus 963 ~~~~~~~~f~~~L~~Ll~~i~~~h---P~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~il~~l~~~~~~~~~ 1039 (1464)
+..+..|..+|.+.|... -|..+|+|.+....... ..|.+.++ |..+..-..+...+-+
T Consensus 658 ------pylds~L~rFLL~RAL~N~RIGHflFWhLRSEm~~~~~----~~RfgllL--------EaYlRGc~~hlk~l~k 719 (1076)
T KOG0904|consen 658 ------PYLDSALVRFLLKRALRNQRIGHFLFWHLRSEMAQPSV----QQRFGLLL--------EAYLRGCTHHLKVLTK 719 (1076)
T ss_pred ------chhHhHHHHHHHHHHhhccccchhhhhhHHHHhccHHH----HHHHHHHH--------HHHHhccHHHHHHHHH
Confidence 345677888887777643 34678999886543211 11111111 1111111111122222
Q ss_pred HHHHHHHHHHHHHHHHhccccccccc--cc-chhhhhhhcccccccccccccCCCCCCcccCCCccccccccceEEEecC
Q 000483 1040 QMKQMVDVYIKLAELETRREQDTNKR--IQ-LPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAESVMVMNG 1116 (1464)
Q Consensus 1040 ~~~~l~~~~~~la~~~~~~~~~~~~~--~~-~~~~l~~l~~l~~~p~~t~~lp~~~~~~y~~~~~~~i~~f~~~~~v~~s 1116 (1464)
|++ .++.+.++..+-.....+.+++ +. +...++.....+. ...+.-|.+|.... |. . +.++++||+|
T Consensus 720 Qve-~l~kLk~lt~~iK~~~~K~~~~~~~~~l~~~lr~~~~~~~--lq~l~sPLdP~~~l--ge-l----~iekckvM~S 789 (1076)
T KOG0904|consen 720 QVE-ALEKLKKLTDLIKLSAEKEDVSQVKEQLKLCLRQLANSEA--LQNLQSPLDPSLKL--GE-L----IIEKCKVMDS 789 (1076)
T ss_pred HHH-HHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhHHHHHH--HHhccCCCChhhhh--cc-h----hhhhhhhhhc
Confidence 322 2222222222111011011110 10 1111111111110 01223466664322 11 1 2367999999
Q ss_pred CCCceEEEEE----cCCCceeeEEEecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceeEEc
Q 000483 1117 INAPKVVECF----GSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWV 1192 (1464)
Q Consensus 1117 ~~~Pk~i~~~----gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v 1192 (1464)
+.+|-.+.+- |+++ .-..++|+| ||||||..+.|+.++|+.+|+... .+|.+..|.++|++...||||.|
T Consensus 790 kkrPLwl~~~Np~~~s~~-~v~iIFKNG-DDLRQDMLtLQmLriMd~iWk~~g----lDlrm~PYgcls~Gd~iGlIEVV 863 (1076)
T KOG0904|consen 790 KKRPLWLVFENPDAGSNL-SVGIIFKNG-DDLRQDMLTLQMLRIMDNIWKTEG----LDLRMLPYGCLSTGDRIGLIEVV 863 (1076)
T ss_pred cCCceEEEecCCCcccCC-ceeEEEcCC-chHHHHHHHHHHHHHHHHHHHhcC----CCeeccccccccccceeeeEEEe
Confidence 9999999884 4444 556899998 999999999999999999999876 89999999999999999999999
Q ss_pred CCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhh-hHHHHHHHHcCCchHHHHHHHHH
Q 000483 1193 DGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRP-VLHYFFLERFLQPAYWFEKRLAY 1271 (1464)
Q Consensus 1193 ~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~p-vl~~~f~~~f~~~~~w~~~R~~f 1271 (1464)
+|+.|+.+|........ +. .-|.+ .|.+|+.++.|....+=.+-..|
T Consensus 864 ~~s~TIa~IQ~~~g~~~-at-------------------------------~afn~~~L~~WLKekNp~e~kld~AIe~F 911 (1076)
T KOG0904|consen 864 RNSETIANIQLNTGNMA-AT-------------------------------AAFNKDALLNWLKEKNPGEDKLDAAIEEF 911 (1076)
T ss_pred cCchhhhhhhhccccce-ee-------------------------------ccCCHHHHHHHHhhcCchHHHHHHHHHHH
Confidence 99999999875321110 10 11223 68889888888777688899999
Q ss_pred HHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeecccccccccC-CC-CCCCCCccccccccccccccccc------
Q 000483 1272 TRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LK-TPERVPFRLTRDIIDGMGVTGVE------ 1343 (1464)
Q Consensus 1272 t~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~~-l~-~pE~VPFRLT~niv~~mG~~g~e------ 1343 (1464)
|.|||.||+++|||||||||.+|||+.+ ||++||||||.+.+.++. |. ..|+|||=||++++..|+-.+..
T Consensus 912 t~SCAGYcVATyVLGIgDRHsDNIMvke-~GqlFHIDFGHiLGh~KsKlGi~RERvPFvLT~dFl~VI~~G~~~~~~~eF 990 (1076)
T KOG0904|consen 912 TLSCAGYCVATYVLGIGDRHSDNIMVKE-TGQLFHIDFGHILGHFKSKLGINRERVPFVLTYDFLHVIQKGKTKNSEKEF 990 (1076)
T ss_pred HHhhccceeeeeeecccccccCceEEec-cCcEEEEEhhhhhccchhhcCcccccCceEeecceeeeecccCCCCchhHH
Confidence 9999999999999999999999999996 999999999999998864 54 47999999999999999865542
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000483 1344 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1380 (1464)
Q Consensus 1344 G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1380 (1464)
+.|+.+|+.++-+||+|.+.+++++..|+--.|.+-+
T Consensus 991 ~kFq~~C~~AYl~lr~H~nLfi~LFsmMl~~glPELs 1027 (1076)
T KOG0904|consen 991 QKFQELCEKAYLALRRHGNLFISLFSMMLGTGLPELS 1027 (1076)
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHhcCCCccc
Confidence 6799999999999999999999999999998887653
No 34
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=99.96 E-value=2.2e-28 Score=305.21 Aligned_cols=419 Identities=18% Similarity=0.214 Sum_probs=268.2
Q ss_pred HHHHHHHHHhccCCCccHHHHHHHHHHhhhcCc--------------------------------hHHHHHHHHHhhhcc
Q 000483 896 LALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSS--------------------------------RQNVIKNMVDTIDEV 943 (1464)
Q Consensus 896 ~Al~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~--------------------------------~~~v~~~~~~~l~~v 943 (1464)
+++..+..-+...+..+.-.+++-+.+.+.... ++.+.....+.+...
T Consensus 1284 ~~~~~~~~~~v~~~~~~~~~i~~al~~~~~~~~~~~~~~dl~~~l~Wa~~~~~~~l~~l~p~~~~~p~~~~~~~~~l~s~ 1363 (1803)
T KOG0902|consen 1284 PSLKEEVTRLVRFDPADLVHIPEALKLFVTQKTTEESRSDLSHTLYWAPVSPLGVLDLLTPIRKPHPRLMQYAVRVLRSY 1363 (1803)
T ss_pred hhhhHHhhHHhhcChhhhhccHHHHHHHhccCcccccccchhheeeccccCcccchhhcccccCCCcHHHHHHHHHHHhC
Confidence 345555555555565555556666666666421 233455667788899
Q ss_pred cccchhhhhhhhhccccCCccccccccHHHHHHHHHHHHHH---hCCchhhhhHhhccccccchhhhccccchhhhhhHH
Q 000483 944 QSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAI---DHPYHTIFQLLALANGDRIKDKQRSRNSFVVDMDKK 1020 (1464)
Q Consensus 944 Ps~kfl~~ipQL~sRL~~~~~~~~~~~f~~~L~~Ll~~i~~---~hP~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1020 (1464)
|...-+..+|||++.|..+. . .-+..++.+.+. -+-|+.+|.|.+-...+. . +.........-.
T Consensus 1364 ~~~~~~fyvPQiVq~lryDk------m--~~v~~~il~~a~~s~l~aHqliWnm~~n~y~d~----~-~~~~~~~~~~l~ 1430 (1803)
T KOG0902|consen 1364 SPNEMLFYVPQIVQALRYDK------M--GYVEEYILWAAGKSQLFAHQLIWNMKANLYVDE----E-AIVKADIGEILD 1430 (1803)
T ss_pred ChhhhhhhhHHHHHHHhhcc------h--hHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccc----c-cccchhHHHHHH
Confidence 99999999999999998743 1 134555555443 366789999986432221 0 000000000111
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhcccccccccccccCCCCCCcccCCC
Q 000483 1021 LAAENLLEELSSYHGAIIRQMKQMVDVYIKLAELETRREQDTNKRIQLPREIRCLRQLELVPVVTATVPIDCTCQYNEGS 1100 (1464)
Q Consensus 1021 ~~a~~il~~l~~~~~~~~~~~~~l~~~~~~la~~~~~~~~~~~~~~~~~~~l~~l~~l~~~p~~t~~lp~~~~~~y~~~~ 1100 (1464)
...+.|++.++....++...-..+++....+...-.+-.+...++..+.+.+.+++.-..++.|+..-.+-...+|..|.
T Consensus 1431 ~~~e~i~~~~s~~a~df~~rEf~ff~~vT~ISg~l~P~~k~~erk~~i~~~l~kik~~~~~YlPs~P~~~v~~i~~~Sg~ 1510 (1803)
T KOG0902|consen 1431 RVREEITGSLSGPARDFYEREFDFFNKVTSISGKLKPYPKGDERKKAILEELSKIKVQPGCYLPSNPDAVVLDIDYKSGT 1510 (1803)
T ss_pred HHHHHHHhcCCchhhHHHHHHhHHHHHhhhccceeecCCCcHHHHHHHHHHHHhhcccCceecCCCCCceEEEeecCCCc
Confidence 22344444444333444443334444443333211111111122333333444433222233222211111112232221
Q ss_pred ccccccccceEEEecCCCCceEEEEEc----CCCc----------eeeEEEecCccchhHHHHHHHHHHHHHHHHhhCcc
Q 000483 1101 FPYFKGLAESVMVMNGINAPKVVECFG----SDGH----------KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRD 1166 (1464)
Q Consensus 1101 ~~~i~~f~~~~~v~~s~~~Pk~i~~~g----sdG~----------~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~e 1166 (1464)
| .-+....|-.++|.- .||- ...-++|.| ||+|||....|++.++..+++.-.
T Consensus 1511 -p----------lQS~aK~PfmatF~vkr~~~~g~~~~~k~~~~~WQa~IFKvG-DDcRQD~LaLQiislf~~if~~~g- 1577 (1803)
T KOG0902|consen 1511 -P----------LQSAAKAPFMATFKVKRLEKDGLQCRSKSQKISWQAAIFKVG-DDCRQDMLALQIISLFKNIFQLVG- 1577 (1803)
T ss_pred -c----------chhhccCCeeEEEeeeeccCCcccccccccchhhhhhhhhcC-chHHHHHHHHHHHHHHHHHHHHcC-
Confidence 1 001112232222221 2221 112689987 999999999999999999999765
Q ss_pred cccCCceeccceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhh
Q 000483 1167 TWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENF 1246 (1464)
Q Consensus 1167 t~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~ 1246 (1464)
.++.+-+|+|+|.+|.||+||.|||+.+=+.+=. ..
T Consensus 1578 ---Ld~~lfPYrV~aT~pGcGVIEviPn~~SRdqlGr--------~t--------------------------------- 1613 (1803)
T KOG0902|consen 1578 ---LDLYLFPYRVVATAPGCGVIEVIPNSKSRDQLGR--------ET--------------------------------- 1613 (1803)
T ss_pred ---CceEEeeeeeeccCCCCceEEeCCCCccHHHhcc--------cc---------------------------------
Confidence 8899999999999999999999999998665311 00
Q ss_pred hhhHHHHHHHHcCC--chHHHHHHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeecccccccccCC-CCCC
Q 000483 1247 RPVLHYFFLERFLQ--PAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-KTPE 1323 (1464)
Q Consensus 1247 ~pvl~~~f~~~f~~--~~~w~~~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~~l-~~pE 1323 (1464)
..-|++||..+|.+ +..|.++|.||.+|+|+||+++|.|.+.|||.+|||||. -|+++|||||+.||..+.- -.-|
T Consensus 1614 ~~glyeyF~~~~G~~~s~~fq~Ar~NF~~S~A~Ysv~s~lLq~KDRHNGNim~Dd-~G~~iHIDFGf~~e~sPGgnl~fE 1692 (1803)
T KOG0902|consen 1614 DNGLYEYFTRKYGDESSEAFQTARYNFVRSMAGYSVLSYLLQIKDRHNGNIMIDD-QGHIIHIDFGFMFESSPGGNLGFE 1692 (1803)
T ss_pred cccHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcccccccCCceeEcc-CCCEEEEeeeeEEecCCCCccCcC
Confidence 01257788888764 679999999999999999999999999999999999995 8999999999999976542 2346
Q ss_pred CCCcccccccccccccccc---cchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhHH
Q 000483 1324 RVPFRLTRDIIDGMGVTGV---EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKA 1386 (1464)
Q Consensus 1324 ~VPFRLT~niv~~mG~~g~---eG~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~~~~~~ 1386 (1464)
. ||.||.+|+..||+.-- -..|...|...+-+.|.+.+.|.+.++.|+.-.|.++...+.+.
T Consensus 1693 ~-~fKLt~Em~~~mgG~~~~~~f~~f~elcVk~yLA~R~~~~~iv~~V~~mldsgLPCfrg~~i~n 1757 (1803)
T KOG0902|consen 1693 P-PFKLTKEMVMLMGGKMEAKPFKWFQELCVKGYLAARPYMDAIVSLVQSMLDSGLPCFRGQTIGN 1757 (1803)
T ss_pred C-CccchHHHHHHhCCCCCCCcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhcCCCccCcchHHH
Confidence 6 99999999999993221 13588899999999999999999999999999999997665543
No 35
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.8e-25 Score=266.10 Aligned_cols=198 Identities=23% Similarity=0.380 Sum_probs=173.9
Q ss_pred CCceeeEEEecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceeEEcCCCCchHHHhhhhccC
Q 000483 1129 DGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRN 1208 (1464)
Q Consensus 1129 dG~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~ 1208 (1464)
+......++|.| |||||+....||+..|-.+|...+ -.|+||.|+|+-+|.++||||-|+|++++|.|-...
T Consensus 584 nWdL~SVIVKtG-dDLrQE~fA~Qli~~f~~IW~Eeg----vplWlRpykIlvtss~sGLIEtI~da~SIHsIKk~l--- 655 (847)
T KOG0903|consen 584 NWDLRSVIVKTG-DDLRQELFAYQLISAFKDIWQEEG----VPLWLRPYKILVTSSDSGLIETIVDAMSIHSIKKRL--- 655 (847)
T ss_pred CcceEEEeeecC-chHHHHHHHHHHHHHHHHHHHHcC----CcceeeeEEEEEEecCccceeeccchhhHHHHHHhc---
Confidence 345567899987 999999999999999999999876 689999999999999999999999999999974321
Q ss_pred CCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHc-CCchHHHHHHHHHHHhhcccchhhheecc
Q 000483 1209 GGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERF-LQPAYWFEKRLAYTRSVAASSMVGYIVGL 1287 (1464)
Q Consensus 1209 ~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f-~~~~~w~~~R~~ft~S~A~~S~vgyilgL 1287 (1464)
+.. -.|++||...+ ++...|-.+.+||..|+|+||+|+|+|.+
T Consensus 656 --------~~~----------------------------~~l~~F~~~~g~~NS~~yk~AQrNFvqSlagYSLvcYlLQv 699 (847)
T KOG0903|consen 656 --------PNL----------------------------ASLRHFFAAFGKPNSEKYKSAQRNFVQSLAGYSLVCYLLQV 699 (847)
T ss_pred --------chh----------------------------hhHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 000 02445665555 36788999999999999999999999999
Q ss_pred CCCCCCeeEEecCCCeEEEeecccccccccCCCCCCCCCcccccccccccccccccc----hhHHHHHHHHHHHhcChHH
Q 000483 1288 GDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEG----VFRRCCEKTLSVMRTNKEA 1363 (1464)
Q Consensus 1288 GDRH~~NILld~~tG~v~hIDfg~~f~~g~~l~~pE~VPFRLT~niv~~mG~~g~eG----~F~~~~~~t~~~Lr~~~~~ 1363 (1464)
.|||..|||||. -|+++|||||+.+...+..---|..||.||.++++.|| |++| -|+..|...+..+|+|.+.
T Consensus 700 KDRHNGNILiD~-EGHIIHIDFGFmLsnsPgnvgFEsAPFKLT~EylEvmg--G~~~d~FdyfK~L~l~gf~a~RKhadr 776 (847)
T KOG0903|consen 700 KDRHNGNILIDE-EGHIIHIDFGFMLSNSPGNVGFESAPFKLTTEYLEVMG--GLDSDMFDYFKSLMLQGFMALRKHADR 776 (847)
T ss_pred ccccCCceEecC-CCCEEEEeeeeEecCCCCCcccccCchhhHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999996 89999999999999988777789999999999999999 8887 4788999999999999999
Q ss_pred HHHHHHHHcc
Q 000483 1364 LLTIVEVFIH 1373 (1464)
Q Consensus 1364 l~~iL~~f~~ 1373 (1464)
|..+.|+|-.
T Consensus 777 Iv~lvEiMq~ 786 (847)
T KOG0903|consen 777 IVLLVEIMQD 786 (847)
T ss_pred HHHHHHHhhc
Confidence 9999999854
No 36
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.90 E-value=3.9e-24 Score=252.22 Aligned_cols=165 Identities=20% Similarity=0.355 Sum_probs=136.1
Q ss_pred CCceEEEEEcCCCce-----------eeEEEecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCC
Q 000483 1118 NAPKVVECFGSDGHK-----------YRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSA 1186 (1464)
Q Consensus 1118 ~~Pk~i~~~gsdG~~-----------y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~ 1186 (1464)
.+|.-+-+...+|.. |.+|+|. +|||||+.|.|++++|+.+|+++. .+|.+.+|+|+|++++.
T Consensus 1026 ~~pv~~p~~~~~gvs~~~~~~~~~q~~~iIyK~--gDLRQDQLVLQmIrLMDrLLKkEn----LDLKLTPYRVLATG~ds 1099 (1374)
T PTZ00303 1026 SAPVTSPVTAVNGVSPESLHDSLPQECMFLYKR--ENVERDQLMCISSRLLQMLLSSEI----GNAEMLDYSVLPLSCDS 1099 (1374)
T ss_pred ccceeeeeeccCCcCccccccccchheeEEEec--CcHHHHHHHHHHHHHHHHHHHhcC----CCccccceEEEeccCCc
Confidence 478888888888887 9999995 699999999999999999999986 79999999999999999
Q ss_pred ceeEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHH
Q 000483 1187 GILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFE 1266 (1464)
Q Consensus 1187 GlIE~v~~t~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w~~ 1266 (1464)
|+||+|++. ++.+|... + +.+||. +.++.
T Consensus 1100 GLIEfVps~-tLAsI~~~------------------------------------~--------Il~YLr--~~~t~---- 1128 (1374)
T PTZ00303 1100 GLIEKAEGR-ELSNLDNM------------------------------------D--------IASYVL--YRGTR---- 1128 (1374)
T ss_pred ccEEEecch-HHHHhhhh------------------------------------H--------HHHHHH--hcCcH----
Confidence 999999974 56655310 0 122222 22222
Q ss_pred HHHHHHHhhcccchhhheeccCCCCCCeeEEecCCCeEEEeecccccccccCCCCCCCCCcccccccccccccc
Q 000483 1267 KRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVT 1340 (1464)
Q Consensus 1267 ~R~~ft~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~~l~~pE~VPFRLT~niv~~mG~~ 1340 (1464)
...||++|+|.||+++||||+||||++||||+. +|+++|||||++|+....-+.+-+-|.|+-.+|..++|.+
T Consensus 1129 ~~~NFi~S~AGYsViTYILgIgDRHngNILId~-dGhLfHIDFGFILg~rtfkeKl~~s~vR~D~~l~eav~~~ 1201 (1374)
T PTZ00303 1129 SCINFLASAKLFLLLNYIFSIGDRHKGNVLIGT-NGALLHIDFRFIFSEKTFVEKLARSTVRIDDAFLAAVEQC 1201 (1374)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccCCceeEcC-CCCEEEEecceeecCchhhhccCCCceehhHHHHHHHHHH
Confidence 246999999999999999999999999999996 9999999999999977644556667899999888776543
No 37
>PF02260 FATC: FATC domain; InterPro: IPR003152 The FATC domain is found at the C-terminal end of the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding; PDB: 2KIT_A 1W1N_A 2KIO_A.
Probab=99.33 E-value=2.4e-13 Score=103.76 Aligned_cols=32 Identities=44% Similarity=0.794 Sum_probs=27.7
Q ss_pred CcCHHHHHHHHHHHccCchhhhhhCcccccCC
Q 000483 1433 MRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1464 (1464)
Q Consensus 1433 ~lsv~~qV~~LI~~Atd~~NLa~m~~gW~pwl 1464 (1464)
++||++||++||++|||++|||+||+||+|||
T Consensus 2 ~lsv~~qV~~LI~~At~~~nLa~my~GW~pw~ 33 (33)
T PF02260_consen 2 PLSVEQQVDELISEATDPENLARMYIGWMPWW 33 (33)
T ss_dssp -S-STHHHHHHHHHHHHHHHHHHHCTSS-TT-
T ss_pred CCCHHHHHHHHHHHHcCHHHHHHHhcchhccC
Confidence 58999999999999999999999999999997
No 38
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=2.8e-09 Score=143.91 Aligned_cols=451 Identities=8% Similarity=-0.112 Sum_probs=251.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHhhhcCchHHHHHHHHHhhhcccccchhhhhhhhhccccCCccccccc
Q 000483 890 RDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLH 969 (1464)
Q Consensus 890 ~~~fl~~Al~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~~~~v~~~~~~~l~~vPs~kfl~~ipQL~sRL~~~~~~~~~~ 969 (1464)
+..++.++.++|.+++ +.........+..+.|-...+...+...+.+....+++.+ ++..||..+...... +-.
T Consensus 1949 ~l~~l~~i~~l~~~~~--~~~~~~~~~~k~~t~~q~~~~~~~~~~~~~~d~n~l~s~~--~l~~~l~~~~~~~~~--~~l 2022 (2806)
T KOG0892|consen 1949 FLVTLEPIRCLQSTAD--KHQSNTDILQKWKTNLQLSSQLMECLSLLIEDRNVLLSLL--QLHKQLSESQLADLA--SLL 2022 (2806)
T ss_pred HHhhhhhhHhhhhhhc--chhhhhHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--HHH
Confidence 4467778888888443 3344445688999999999999999999988888888777 555555555332100 001
Q ss_pred cHHHHHHHHHHHHHHhCCchhhhhHh--hccccccchh--hhccccch-h------hhhhHHHHHHHHHHHHHhHHHHHH
Q 000483 970 NFQFALVSLVKKMAIDHPYHTIFQLL--ALANGDRIKD--KQRSRNSF-V------VDMDKKLAAENLLEELSSYHGAII 1038 (1464)
Q Consensus 970 ~f~~~L~~Ll~~i~~~hP~~~l~~l~--~~~~~~~~~~--~~~~~~~~-~------~~~~~~~~a~~il~~l~~~~~~~~ 1038 (1464)
.+.-+....+.+.-..+|.+.-.... +...+.+..- ..+...-. + .......+.+.+..-++.......
T Consensus 2023 ~~~g~e~~~la~~~~~~~~~~~~~r~~~~i~~~~~~~~~~s~aq~~~k~~~~~~~e~iL~~~~~kne~~~~~s~~~~~~~ 2102 (2806)
T KOG0892|consen 2023 KYYGLELCKLAESFLIADLLQNIARAFPVIMLSIKLLCKFSLAQENLKHDIDKLSEAILWQRDEKNEAIISLSESLAKNN 2102 (2806)
T ss_pred HHhhhHHHHHHHHHhchhhHHhHHHhhHHHHHHHHHHhhhhhhhhhccchhhhhHHHHHHHHHhhhhHHHHHHhhhhhcc
Confidence 12222333333333333332221110 0000000000 00000000 0 000111111222111121111111
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhccc-ccccccccccCCCCCCcccCCCcc--ccccccceEEEec
Q 000483 1039 RQMKQMVDVYIKLAELETRREQDTNKRIQLPREIRCLRQL-ELVPVVTATVPIDCTCQYNEGSFP--YFKGLAESVMVMN 1115 (1464)
Q Consensus 1039 ~~~~~l~~~~~~la~~~~~~~~~~~~~~~~~~~l~~l~~l-~~~p~~t~~lp~~~~~~y~~~~~~--~i~~f~~~~~v~~ 1115 (1464)
....-..+.|..+.+..... ...+...-+++.+.+-..+ +.. +.+.-.+ ..|.- ++. .+.+|.+. -..
T Consensus 2103 ~lk~~~~~~~a~~g~Wlaet-k~ens~~i~e~yl~~a~~~ae~~---d~e~~~~--~~~~~-s~a~~~~akysd~--~~~ 2173 (2806)
T KOG0892|consen 2103 SLKEFPSDIYAVLGKWLAET-KSENSALISEKYLEKAVSLAEHY---DNESCKA--LIYCQ-SFAQFCLAKYSDP--DYQ 2173 (2806)
T ss_pred hhhhhHHHHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHhhhc---chhHHHH--HHhHH-HHHHHHHHhccCc--hhh
Confidence 11122233333333332211 1223333344443321111 000 0000000 00100 122 23444442 235
Q ss_pred CCCCceEEEEEcCCCceeeEEEecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceeEEcCCC
Q 000483 1116 GINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGT 1195 (1464)
Q Consensus 1116 s~~~Pk~i~~~gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t 1195 (1464)
+...|+..+..++++...+...| +.+++|+++.+++. +...++.|++.|-..+|+++++....+|-+|+.|+
T Consensus 2174 ~~~~~~~sse~et~~~l~k~~~~-~~~~~~er~~q~~~-------~~~~~~~rq~~lDe~~l~~l~~~r~~fL~~Alt~Y 2245 (2806)
T KOG0892|consen 2174 EDEERRSSSEFETLKDLQKLERS-TVEASNEREEQMRK-------NHHVRVQRQLILDEEELLALSEDRSKFLTLALTNY 2245 (2806)
T ss_pred hHHHHHhHHHHhhHHHHHHHHHh-hhhhhHHHHHHHHH-------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhH
Confidence 66778888899999887776666 67999999999886 23334455678889999999999999999999997
Q ss_pred CchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHH---HcCCchHHHHHHHHHH
Q 000483 1196 VPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLE---RFLQPAYWFEKRLAYT 1272 (1464)
Q Consensus 1196 ~tl~~il~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~---~f~~~~~w~~~R~~ft 1272 (1464)
......-... ..+.+.|+.+..+....+.+.+.. -+.++++.=+-+|.|+++++--+ .+.++-.|...+..|.
T Consensus 2246 l~cl~~~~~~--D~~~i~R~cslWfsns~~~evn~~--mk~~i~~ipsyKFip~~yQlAaRl~~~~~~~fq~~L~~Li~r 2321 (2806)
T KOG0892|consen 2246 LNCLSESDEY--DVDLIFRCCSLWFSNSHLKEVNNS--LKHEIQTVPSYKFIPLVYQLAARLGNSENNSFQKSLTSLIYR 2321 (2806)
T ss_pred HHHHhhcccc--cHHHHHHHhhhhccccchHHHHHH--HHHHhccCCcchhHHHHHHHHHHhccccCchHHHHHHHHHHH
Confidence 7655432211 011223332222222222221111 12222222244677776665432 3567889999999999
Q ss_pred HhhcccchhhheeccCCCCCCeeEEecCCCeEEEeecccccccccCCCCCCCCCcccccccccccccccccchhHHHHHH
Q 000483 1273 RSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEK 1352 (1464)
Q Consensus 1273 ~S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~~l~~pE~VPFRLT~niv~~mG~~g~eG~F~~~~~~ 1352 (1464)
.+.+.-.-..|+|+.+++|--+. .-+-.|.+ | ++.+++||++|+...++++++.++.++++.|++.
T Consensus 2322 ~~~dhPyhtly~L~~L~~~~rd~-----e~~n~sr~-------s--l~~~rki~a~l~~~~v~~~~~~~v~~v~~lc~~y 2387 (2806)
T KOG0892|consen 2322 VGRDHPYHTLYQLLSLVNAVRDN-----EDENRSRG-------S--IDRDRKIAAELDLCDVNQGAGNMVRQLECLCEAY 2387 (2806)
T ss_pred HhccCchHHHHHHHHHHhcCcCh-----hhhhhccc-------c--cchhHHHHHHHhhhHhhccchhHHHHHHHHHHHH
Confidence 99999999999999998887761 11122322 2 7789999999999999999999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHccCCCcccccC
Q 000483 1353 TLSVMRTNKEALLTIVEVFIHDPLYKWALS 1382 (1464)
Q Consensus 1353 t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~~ 1382 (1464)
+.-+- -......++.+....++...|...
T Consensus 2388 I~lAn-l~~~q~~t~~k~v~~p~~~~~~K~ 2416 (2806)
T KOG0892|consen 2388 ISLAN-LKTSQNDTTSKLVRLPGYQWFLKQ 2416 (2806)
T ss_pred HHHhc-CcccccchhhhhhcCccccHHHhh
Confidence 98888 667777888888888888888754
No 39
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.63 E-value=1.6 Score=58.29 Aligned_cols=59 Identities=17% Similarity=-0.068 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000483 683 LLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYIS 749 (1464)
Q Consensus 683 wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~ 749 (1464)
|...+.+....|++..|...+.++..+.. .+....+..|.++|..|+...|+.+++.++
T Consensus 840 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 840 LDTLGWLLVEKGEADRALPLLRKAVNIAP--------EAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34445556666666666665555433211 111223445666666666666666665543
No 40
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=93.42 E-value=0.22 Score=54.54 Aligned_cols=98 Identities=14% Similarity=0.174 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhccCCCccHHHHHHHHHHhhhcCc------------hHHHHHHHHHhhhcccccchhhhhhhhhccccCC
Q 000483 895 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 962 (1464)
Q Consensus 895 ~~Al~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~------------~~~v~~~~~~~l~~vPs~kfl~~ipQL~sRL~~~ 962 (1464)
..|+..|++|+..++......+..++.-|=..+. +..|.....+.+.+.|...+...+|||+..|..+
T Consensus 43 p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~aL~LL~~~~~~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQaLr~E 122 (184)
T smart00145 43 PKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPEDALELLSPKFPDPFVRAYAVERLESASDEELLLYLLQLVQALKYE 122 (184)
T ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHHHHHhCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcc
Confidence 5788899999999998867778999999976643 4567788889999999999999999999999875
Q ss_pred ccccccccHHHHHHHHHHHHHHhCCc---hhhhhHhhcc
Q 000483 963 KDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALA 998 (1464)
Q Consensus 963 ~~~~~~~~f~~~L~~Ll~~i~~~hP~---~~l~~l~~~~ 998 (1464)
.. -...|..+|.+.|...|. +.+|.|.+..
T Consensus 123 ~~------~~~~L~~fLl~ra~~s~~~~~~l~W~L~~e~ 155 (184)
T smart00145 123 PY------LDSALARFLLERALKNQRLGHFFYWYLKSEL 155 (184)
T ss_pred cc------cccHHHHHHHHHHhhCHHHHHHHHHHHHHHc
Confidence 21 125799999999998886 6678777654
No 41
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=92.43 E-value=51 Score=44.09 Aligned_cols=85 Identities=12% Similarity=0.072 Sum_probs=52.0
Q ss_pred HHHHHHHHhchhhHHHHhhHhHHHHhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhc-----cc----c
Q 000483 337 RVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ-----SH----K 407 (1464)
Q Consensus 337 ~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPD~~yGi~~-----~~----~ 407 (1464)
.++....+.+-+..|+-.++...... | ..+.....+-.+|...+++|.+..+.. .+ .
T Consensus 436 ~l~~~~~~~~~~~~A~~~~~~~~~~~--------~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 501 (899)
T TIGR02917 436 LLILSYLRSGQFDKALAAAKKLEKKQ--------P------DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA 501 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhC--------C------CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Confidence 45667777888888888887654321 1 113344556667777777766555531 11 1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000483 408 LSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1464)
Q Consensus 408 l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1464)
......-|...|++++|...|+..++..
T Consensus 502 ~~~la~~~~~~g~~~~A~~~~~~~~~~~ 529 (899)
T TIGR02917 502 AANLARIDIQEGNPDDAIQRFEKVLTID 529 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2344566777788888888877777643
No 42
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=92.31 E-value=0.21 Score=53.68 Aligned_cols=102 Identities=16% Similarity=0.239 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhccCCCccHHHHHHHHHHhhhcCc------------hHHHHHHHHHhhhcccccchhhhhhhhhccccCC
Q 000483 895 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 962 (1464)
Q Consensus 895 ~~Al~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~------------~~~v~~~~~~~l~~vPs~kfl~~ipQL~sRL~~~ 962 (1464)
..|+..|++|+...+......+..++.-|-..+. +..|.+...+.+..++...+...+|||+..|.+.
T Consensus 45 p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~aLeLL~~~f~~~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE 124 (166)
T cd00870 45 KKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIEDALELLSPYFTNPVVRKYAVSRLKLASDEELLLYLLQLVQALKYE 124 (166)
T ss_pred cHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHcCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 4688899999999888777678899999977653 3467788889999999999999999999999986
Q ss_pred cccc-ccccHHHHHHHHHHHHHHhCCc---hhhhhHhh
Q 000483 963 KDAL-GLHNFQFALVSLVKKMAIDHPY---HTIFQLLA 996 (1464)
Q Consensus 963 ~~~~-~~~~f~~~L~~Ll~~i~~~hP~---~~l~~l~~ 996 (1464)
.... +.......|..+|++.|...|. +.+|.|.+
T Consensus 125 ~~~~~~~~~~~s~La~fLl~Ral~s~~ig~~lfW~Lk~ 162 (166)
T cd00870 125 NLDLSPLPRLDSPLADFLIERALKNPKLANFLYWYLKV 162 (166)
T ss_pred ccccccccccccHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 4200 0001236799999999998886 45566654
No 43
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=92.15 E-value=0.21 Score=53.90 Aligned_cols=98 Identities=15% Similarity=0.213 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhccCCCccHHHHHHHHHHhhhcCc------------hHHHHHHHHHhhhcccccchhhhhhhhhccccCC
Q 000483 895 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 962 (1464)
Q Consensus 895 ~~Al~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~------------~~~v~~~~~~~l~~vPs~kfl~~ipQL~sRL~~~ 962 (1464)
..|+..+++|+...+......+..++.-|=..+. +..|.+...+.+.++|...+...+|||+..|.+.
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aLeLL~~~f~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE 117 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQALELLDCNFPDEHVREFAVRCLEKLSDDELLQYLLQLVQVLKYE 117 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcc
Confidence 5789999999999998877778999999976643 3567788889999999999999999999999985
Q ss_pred ccccccccHHHHHHHHHHHHHHhCCc---hhhhhHhhcc
Q 000483 963 KDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALA 998 (1464)
Q Consensus 963 ~~~~~~~~f~~~L~~Ll~~i~~~hP~---~~l~~l~~~~ 998 (1464)
.. ..+.|..+|.+.|...|. +.+|.+.+..
T Consensus 118 ~~------~ds~La~FLl~Ral~n~~igh~lfW~L~~E~ 150 (171)
T cd00872 118 PY------HDSDLVRFLLKRALRNQRIGHFFFWHLRSEM 150 (171)
T ss_pred cc------cCCHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Confidence 31 125799999999998886 5567776543
No 44
>PLN03218 maturation of RBCL 1; Provisional
Probab=90.71 E-value=40 Score=46.94 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhhCCCchhhhhhhcc-------c---chhhHHHHHHhhCCHHHHHHHHHHHHhh
Q 000483 381 RHIEILVSAVTQINEPDSLYGIIQS-------H---KLSSQIVTLEHEGNWSKALEYYELQVRS 434 (1464)
Q Consensus 381 ~~~e~L~~IY~~IdEPD~~yGi~~~-------~---~l~~~i~~yE~eg~W~kAL~~Yd~~l~~ 434 (1464)
..+..|+..|...++.|.+..+... + .....|.-|-+.|++++|+..|+.-...
T Consensus 473 ~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4566777777777777777666431 1 2346677788888888888887765543
No 45
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=90.29 E-value=0.44 Score=50.59 Aligned_cols=95 Identities=15% Similarity=0.219 Sum_probs=75.3
Q ss_pred HHHHHHHHHhccCCCccHHHHHHHHHHhhhcC------------chHHHHHHHHHhhhcccccchhhhhhhhhccccCCc
Q 000483 896 LALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTK 963 (1464)
Q Consensus 896 ~Al~~Yl~sL~~~~~~~~~~~~RllsLWl~~~------------~~~~v~~~~~~~l~~vPs~kfl~~ipQL~sRL~~~~ 963 (1464)
.++.-+++|+...+......+..++.-|=..+ .+..|.....+.+.+.|.......+|||+..|.++.
T Consensus 39 ~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~aL~LL~~~~~~~~vr~yAv~~L~~~~~~~l~~ylpQLVQaLkye~ 118 (152)
T cd00864 39 KALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPEDALELLSPKYPDPVVRQYAVRVLESASDDELLLYLPQLVQALKYEP 118 (152)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHHHHHHcCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 67788889999887777777888888885554 235677888899999999999999999999998753
Q ss_pred cccccccHHHHHHHHHHHHHHhCCc---hhhhhHhh
Q 000483 964 DALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLA 996 (1464)
Q Consensus 964 ~~~~~~~f~~~L~~Ll~~i~~~hP~---~~l~~l~~ 996 (1464)
. ....|..+|.+.|...|. +.+|.|.+
T Consensus 119 ~------~~~~L~~fLl~ra~~s~~~~~~l~W~L~~ 148 (152)
T cd00864 119 Y------LDSYLARFLLERALKSQRLGHQLYWNLKS 148 (152)
T ss_pred c------CCCHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1 125799999999999886 55666654
No 46
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=89.39 E-value=25 Score=46.79 Aligned_cols=290 Identities=11% Similarity=0.049 Sum_probs=144.0
Q ss_pred hHHHHHHHHHhhCCCchhhhhhhccc------chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCc
Q 000483 381 RHIEILVSAVTQINEPDSLYGIIQSH------KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPS 454 (1464)
Q Consensus 381 ~~~e~L~~IY~~IdEPD~~yGi~~~~------~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~ 454 (1464)
.....|++.|.+-++.|.+..+...- .....+.-|.+.|++++|+..|+.-.+.+ ..|+
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g---------------~~pd 324 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG---------------VSID 324 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------------CCCC
Confidence 34678999999999999988886521 34678899999999999999998765543 2244
Q ss_pred cCCCCCchhhhhhccchhhHHHHHHHhhchhhHHHHhhhccccccCCCCCCcchhHHHHHHHHhcCCCCCcccccCCCCC
Q 000483 455 VHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFP 534 (1464)
Q Consensus 455 ~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~ 534 (1464)
. ..+..+++++-.+|..+......+.+.... ...+....-....+--+.|+++....+ ... +
T Consensus 325 --------~------~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g--~~~d~~~~~~Li~~y~k~G~~~~A~~v-f~~-m 386 (697)
T PLN03081 325 --------Q------FTFSIMIRIFSRLALLEHAKQAHAGLIRTG--FPLDIVANTALVDLYSKWGRMEDARNV-FDR-M 386 (697)
T ss_pred --------H------HHHHHHHHHHHhccchHHHHHHHHHHHHhC--CCCCeeehHHHHHHHHHCCCHHHHHHH-HHh-C
Confidence 1 134578888888887654422222111110 111111112223334445555432221 111 1
Q ss_pred CCcCcccchhhhhHHHHHHHH-hcCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH-HHHHhHHHHHHHhhhhc
Q 000483 535 SGQNIKSGHFHENLHSCLTAL-REGDSEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVK-LQILCHLGVAWDIRWKS 612 (1464)
Q Consensus 535 ~~~~~~~~~f~~~L~~~L~al-~~~d~~~f~~~i~~aR~~l~~~Ls~~s~ES~~~~y~~lvr-Lq~L~ELe~~~~l~~~~ 612 (1464)
. .++...|+..+ .+. +.|+.+++.+..++.... .+ .--...|..++. +-....+++..++...+
T Consensus 387 ~--~~d~~t~n~lI----~~y~~~G~~~~A~~lf~~M~~~---g~-----~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 387 P--RKNLISWNALI----AGYGNHGRGTKAVEMFERMIAE---GV-----APNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred C--CCCeeeHHHHH----HHHHHcCCHHHHHHHHHHHHHh---CC-----CCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 0 12333454322 222 568888887777765432 11 111111333333 11222233333322111
Q ss_pred cCCccccccccccccCCCCCcchhhhhHHHHHHHHHHHhhhhchhhhhhHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Q 000483 613 SGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRK 692 (1464)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~~~~~~~~~EpiL~~R~~vl~il~~~e~~~~~wl~~a~laRk 692 (1464)
... ..+.|.. ..+...+...-+.-.+-|. ... ++-.+. .....+|......|++
T Consensus 453 ~~~-------------~g~~p~~-------~~y~~li~~l~r~G~~~eA----~~~-~~~~~~-~p~~~~~~~Ll~a~~~ 506 (697)
T PLN03081 453 SEN-------------HRIKPRA-------MHYACMIELLGREGLLDEA----YAM-IRRAPF-KPTVNMWAALLTACRI 506 (697)
T ss_pred HHh-------------cCCCCCc-------cchHhHHHHHHhcCCHHHH----HHH-HHHCCC-CCCHHHHHHHHHHHHH
Confidence 100 0000010 0111111111111011111 111 111122 1245568778889999
Q ss_pred cCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 000483 693 GFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISEN 751 (1464)
Q Consensus 693 ag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~ 751 (1464)
.|+++.|..+..++..+... +.....-.++.+=..|+.+.|.++.+.+..+
T Consensus 507 ~g~~~~a~~~~~~l~~~~p~--------~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 507 HKNLELGRLAAEKLYGMGPE--------KLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred cCCcHHHHHHHHHHhCCCCC--------CCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999887776544221 1111233466777889999999988777654
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=87.31 E-value=79 Score=39.04 Aligned_cols=59 Identities=14% Similarity=-0.118 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHH
Q 000483 680 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKY 747 (1464)
Q Consensus 680 ~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~ 747 (1464)
....+-.+++|-+.|.+..|...+.++..+. |.. ...++.|.+++..|+++.|.++-+.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--------P~~-~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQR--------PDA-YDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3445667899999999999999988765442 111 2247889999999999999887653
No 48
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=86.96 E-value=0.73 Score=50.54 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhccCCCccHHHHHHHHHHhhhcCc------------hHHHHHHHHHhhhcccccchhhhhhhhhccccCC
Q 000483 895 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 962 (1464)
Q Consensus 895 ~~Al~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~------------~~~v~~~~~~~l~~vPs~kfl~~ipQL~sRL~~~ 962 (1464)
..|+..+++|+...+......+..++.-|=..+. ++.|.....+.+...|...+...+|||+.-|.+.
T Consensus 44 p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~AL~LL~~~f~~~~VR~yAv~~L~~~~d~~l~~yLpQLVQaLr~e 123 (184)
T PF00613_consen 44 PEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDALELLSPNFPDPFVRQYAVRRLESLSDEELLFYLPQLVQALRYE 123 (184)
T ss_dssp GGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHHHHCTSTT---HHHHHHHHHHHCTS-HHHHHHHHHHHHHHGGGS
T ss_pred chHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHHHHHHHhhccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHheec
Confidence 3578889999988877666678888888876542 3567788889999999999999999999999875
Q ss_pred ccccccccHHHHHHHHHHHHHHhCCc---hhhhhHhhcc
Q 000483 963 KDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALA 998 (1464)
Q Consensus 963 ~~~~~~~~f~~~L~~Ll~~i~~~hP~---~~l~~l~~~~ 998 (1464)
.. -...|..+|++.|...|. +.+|.|.+..
T Consensus 124 ~~------~~s~L~~fLl~ra~~s~~ia~~l~W~L~~e~ 156 (184)
T PF00613_consen 124 PY------HDSPLARFLLRRALKSPRIAHQLFWYLKAEL 156 (184)
T ss_dssp SS------SS-HHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cc------cccHHHHHHHHHHHhCHHHHHHHHHHHHHhc
Confidence 21 125799999999998886 5667776654
No 49
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=86.66 E-value=1.2e+02 Score=40.06 Aligned_cols=113 Identities=7% Similarity=-0.008 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHhchhhHHHHhhHhHHHHhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhcc-----c-c
Q 000483 334 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-K 407 (1464)
Q Consensus 334 d~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPD~~yGi~~~-----~-~ 407 (1464)
+...++.+..+-|-+..|+-.++...... | ..++.+..|.-..-..+++|.+.-.... + .
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--------p------~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~ 109 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA--------K------NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ 109 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC--------C------CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC
Confidence 56678888899999999988888754332 1 1133445555566667777766655431 1 1
Q ss_pred ---hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhch
Q 000483 408 ---LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGC 484 (1464)
Q Consensus 408 ---l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~ 484 (1464)
......-|...|++++|...|+..+... |+ +...+..+.+++..+|.
T Consensus 110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-----------------P~-------------~~~a~~~la~~l~~~g~ 159 (656)
T PRK15174 110 PEDVLLVASVLLKSKQYATVADLAEQAWLAF-----------------SG-------------NSQIFALHLRTLVLMDK 159 (656)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------CC-------------cHHHHHHHHHHHHHCCC
Confidence 2344567888999999999999998864 33 12245677888999998
Q ss_pred hhHHHH
Q 000483 485 MHVLDM 490 (1464)
Q Consensus 485 ~~~L~~ 490 (1464)
.+....
T Consensus 160 ~~eA~~ 165 (656)
T PRK15174 160 ELQAIS 165 (656)
T ss_pred hHHHHH
Confidence 765543
No 50
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=86.57 E-value=1.1 Score=48.22 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhc-cCCCccHHHHHHHHHHhhhcCc------------hHHHHHHHHHhhhcccccchhhhhhhhhccccC
Q 000483 895 GLALEGYKRCLV-IGDKYDVRVVFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGS 961 (1464)
Q Consensus 895 ~~Al~~Yl~sL~-~~~~~~~~~~~RllsLWl~~~~------------~~~v~~~~~~~l~~vPs~kfl~~ipQL~sRL~~ 961 (1464)
..|+..|++|+. .+++ ....+..++.-|=..+. +..|.....+.+..++.......+|||+.-|.+
T Consensus 38 p~aLp~~L~s~~~w~~~-~~~e~~~LL~~W~p~~p~~ALeLL~~~f~d~~VR~yAV~~L~~~~ddeL~~yLpQLVQaLky 116 (169)
T cd00869 38 PNALPLVLASAPSWDWA-NLMDVYQLLHQWAPLRPLIALELLLPKFPDQEVRAHAVQWLARLSNDELLDYLPQLVQALKF 116 (169)
T ss_pred cHHHHHHHHhcccCcHH-HHHHHHHHHhCCCCCCHHHHHHHcCCcCCChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 478888999874 4443 34457888888876653 346788888999999999999999999999998
Q ss_pred CccccccccHHHHHHHHHHHHHHhCCc---hhhhhHhhcc
Q 000483 962 TKDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALA 998 (1464)
Q Consensus 962 ~~~~~~~~~f~~~L~~Ll~~i~~~hP~---~~l~~l~~~~ 998 (1464)
+.. -...|..+|.+.|...|. +.+|.|.+..
T Consensus 117 E~~------~~s~L~~FLl~RAl~n~~i~h~lfW~Lk~e~ 150 (169)
T cd00869 117 ELY------LKSALVRFLLSRSLVSLRFAHELYWLLKDAL 150 (169)
T ss_pred ccc------CcChHHHHHHHHHhcCHHHHHHHHHHhHHHc
Confidence 531 125799999999988776 5667776644
No 51
>PLN03218 maturation of RBCL 1; Provisional
Probab=85.76 E-value=48 Score=46.12 Aligned_cols=299 Identities=13% Similarity=0.143 Sum_probs=156.6
Q ss_pred cCHHHHHHHHHHhchhhHHHHhhHhHHHHhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhcc-------
Q 000483 333 VDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS------- 405 (1464)
Q Consensus 333 Id~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPD~~yGi~~~------- 405 (1464)
.-|..+-.+..+||.+..|+-.++.-.+. + ..+.......|+..|.+.++.|.+..+...
T Consensus 473 ~tynsLI~~y~k~G~vd~A~~vf~eM~~~-------G------v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 473 KLYTTLISTCAKSGKVDAMFEVFHEMVNA-------G------VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHc-------C------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 34667888888999999999877753211 0 112345678999999999999998877531
Q ss_pred c---chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhh
Q 000483 406 H---KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQV 482 (1464)
Q Consensus 406 ~---~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~L 482 (1464)
+ .....|.-|-+.|++++|+..|+.-...... ..|+ ...+.-++.++-..
T Consensus 540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-------------i~PD--------------~vTynaLI~ay~k~ 592 (1060)
T PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP-------------IDPD--------------HITVGALMKACANA 592 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC-------------CCCc--------------HHHHHHHHHHHHHC
Confidence 1 2457889999999999999999887653210 2244 11345688888888
Q ss_pred chhhHHHHhhhccccccCCCCCCcchhHHHHHHHHhcCCCCCcccccCCCCC-CCcCcccchhhhhHHHHHHHHhcCChH
Q 000483 483 GCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFP-SGQNIKSGHFHENLHSCLTALREGDSE 561 (1464)
Q Consensus 483 G~~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~-~~~~~~~~~f~~~L~~~L~al~~~d~~ 561 (1464)
|.++......+.+.... .............+-=+.|+++....+. .... ....++...|+..+ .+ ..+.|+.+
T Consensus 593 G~ldeA~elf~~M~e~g--i~p~~~tynsLI~ay~k~G~~deAl~lf-~eM~~~Gv~PD~~TynsLI-~a--~~k~G~~e 666 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYN--IKGTPEVYTIAVNSCSQKGDWDFALSIY-DDMKKKGVKPDEVFFSALV-DV--AGHAGDLD 666 (1060)
T ss_pred CCHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHH-HH--HHhCCCHH
Confidence 88766544433332211 1111111112233344566665433211 0000 01123333343222 11 12457777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH-HHHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhH
Q 000483 562 EFYRKLKHSKQELVLSVACASEESTEYIYSAIVK-LQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSW 640 (1464)
Q Consensus 562 ~f~~~i~~aR~~l~~~Ls~~s~ES~~~~y~~lvr-Lq~L~ELe~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (1464)
.+.+.++.++.. ........|.+++. +-....++++.++...+... + ..| +
T Consensus 667 eA~~l~~eM~k~--------G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~--------g---~~P---d------ 718 (1060)
T PLN03218 667 KAFEILQDARKQ--------GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI--------K---LRP---T------ 718 (1060)
T ss_pred HHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--------C---CCC---C------
Confidence 777777665432 11111223444433 22223344444332221100 0 011 1
Q ss_pred HHHHHHHHHHhhhhchhhhhhHHHHHHHHHHhcccchHHHHHHHHHHHHHHhcCChhHHHHHHHHHhhh
Q 000483 641 LNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFL 709 (1464)
Q Consensus 641 l~~~W~~rl~~~~~~~~~~EpiL~~R~~vl~il~~~e~~~~~wl~~a~laRkag~~~~A~~aL~~l~~l 709 (1464)
..+|...+...-..-.+-+.+--++...-.=+.+...+...++ ..|.+.|+++.|...+.++...
T Consensus 719 -vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL---~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 719 -VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL---VASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHc
Confidence 1357777766544444444333333222111123333444444 6788899999998888877644
No 52
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=82.73 E-value=2.4e+02 Score=40.10 Aligned_cols=83 Identities=18% Similarity=0.001 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCC---
Q 000483 680 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNE--- 756 (1464)
Q Consensus 680 ~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~--- 756 (1464)
...++..+.+..+.|++..|...+.++.... |.+.......|.++-..|+...|+..++.++.......
T Consensus 637 ~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 708 (1157)
T PRK11447 637 ADARLGLIEVDIAQGDLAAARAQLAKLPATA--------NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSM 708 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcch
Confidence 4567777888889999999988877654321 11122334557777788999999998888776432211
Q ss_pred chhHHHHHHHHHHH
Q 000483 757 EAPDVYRLVGKWLA 770 (1464)
Q Consensus 757 ~~a~~~~llG~wla 770 (1464)
..+.++..+|....
T Consensus 709 ~~a~~~~~~a~~~~ 722 (1157)
T PRK11447 709 ESALVLRDAARFEA 722 (1157)
T ss_pred hhHHHHHHHHHHHH
Confidence 12344444554443
No 53
>PLN03077 Protein ECB2; Provisional
Probab=78.95 E-value=1.9e+02 Score=39.49 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhCCCchhhhhhhcc---c---chhhHHHHHHhhCCHHHHHHHHHHHH
Q 000483 382 HIEILVSAVTQINEPDSLYGIIQS---H---KLSSQIVTLEHEGNWSKALEYYELQV 432 (1464)
Q Consensus 382 ~~e~L~~IY~~IdEPD~~yGi~~~---~---~l~~~i~~yE~eg~W~kAL~~Yd~~l 432 (1464)
....|++.|.+.++.|.+.-+... . +.+..|.-|.+.|++++|+..|+...
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345566666666666666666431 1 23456666666777777776666554
No 54
>PF13575 DUF4135: Domain of unknown function (DUF4135)
Probab=77.45 E-value=11 Score=45.94 Aligned_cols=111 Identities=21% Similarity=0.199 Sum_probs=83.1
Q ss_pred CCCceeeEEEecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceeEEcCCCCchHHHhhhhcc
Q 000483 1128 SDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTR 1207 (1464)
Q Consensus 1128 sdG~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~ 1207 (1464)
++|. +.+.|| .+++-|..+..|+..+|.-.... .+.++++++++-+..-|-.|||++..--.
T Consensus 68 ~~g~--kivYKP--Rsl~~d~~f~~l~~~ln~~~~~~------~~~l~~~~~l~~g~~YgW~EfI~~~~c~~-------- 129 (370)
T PF13575_consen 68 SSGK--KIVYKP--RSLSIDKAFNDLLEWLNEKNGTP------SLDLPTPKVLDRGDGYGWQEFIEHEPCNS-------- 129 (370)
T ss_pred CCCC--EEEEeC--cccHHHHHHHHHHHHHhhhcccc------ccccccceeeeccCcceeEEEecCCCCCC--------
Confidence 3553 467886 68999999999999999874321 36688889999877799999998621100
Q ss_pred CCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhcccchhhheecc
Q 000483 1208 NGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGL 1287 (1464)
Q Consensus 1208 ~~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyilgL 1287 (1464)
.. --..|=+-++....+.|+||.
T Consensus 130 ------------------------~~---------------------------------ev~~yY~r~G~llal~y~L~~ 152 (370)
T PF13575_consen 130 ------------------------EE---------------------------------EVERYYYRLGVLLALLYLLNG 152 (370)
T ss_pred ------------------------HH---------------------------------HHHHHHHHHHHHHHHHHHhCC
Confidence 00 011344567788889999999
Q ss_pred CCCCCCeeEEecCCCeEEEeeccccccc
Q 000483 1288 GDRHAMNILIDQATAEVVHIDLGVAFEQ 1315 (1464)
Q Consensus 1288 GDRH~~NILld~~tG~v~hIDfg~~f~~ 1315 (1464)
.|-|-+||.-+ -+..|=||+-..|..
T Consensus 153 ~DlH~ENIIa~--g~~PvlIDlETlf~~ 178 (370)
T PF13575_consen 153 TDLHFENIIAS--GEYPVLIDLETLFHP 178 (370)
T ss_pred CcccccceEEe--CCCcEEEehhhhCCc
Confidence 99999999997 478899999888875
No 55
>PLN03077 Protein ECB2; Provisional
Probab=75.01 E-value=3.3e+02 Score=37.27 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=59.0
Q ss_pred chHHHHHHHHHhhCCCchhhhhhhcc---c---chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCC
Q 000483 380 PRHIEILVSAVTQINEPDSLYGIIQS---H---KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLP 453 (1464)
Q Consensus 380 ~~~~e~L~~IY~~IdEPD~~yGi~~~---~---~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p 453 (1464)
......|+..|.+.++.|.+..+... + +....+.-|-+.|++++|+..|+.-.+.+ ..|
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g---------------~~P 387 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN---------------VSP 387 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC---------------CCC
Confidence 45678899999999999998888642 1 35688999999999999999998765543 235
Q ss_pred ccCCCCCchhhhhhccchhhHHHHHHHhhchhhHH
Q 000483 454 SVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVL 488 (1464)
Q Consensus 454 ~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L 488 (1464)
+ + .....++.++-..|..+..
T Consensus 388 d--------~------~t~~~ll~a~~~~g~~~~a 408 (857)
T PLN03077 388 D--------E------ITIASVLSACACLGDLDVG 408 (857)
T ss_pred C--------c------eeHHHHHHHHhccchHHHH
Confidence 5 1 1345678888778865544
No 56
>TIGR02906 spore_CotS spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.
Probab=74.31 E-value=43 Score=39.40 Aligned_cols=31 Identities=26% Similarity=0.106 Sum_probs=26.1
Q ss_pred hhhheeccCCCCCCeeEEecCCCeEEEeecccc
Q 000483 1280 MVGYIVGLGDRHAMNILIDQATAEVVHIDLGVA 1312 (1464)
Q Consensus 1280 ~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~ 1312 (1464)
...+.+.=||=|++||+++. |.+.-|||+.+
T Consensus 184 ~~~~~liHgD~~~~Nil~~~--~~i~lIDfd~~ 214 (313)
T TIGR02906 184 KKIRGFCHQDYAYHNILLKD--NEVYVIDFDYC 214 (313)
T ss_pred cCcCceEcCCCCcccEEEeC--CcEEEEECccc
Confidence 34577889999999999996 78999999954
No 57
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=74.09 E-value=2.1e+02 Score=37.98 Aligned_cols=67 Identities=16% Similarity=-0.007 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 000483 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 753 (1464)
Q Consensus 679 ~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~ 753 (1464)
....+...+.++.+.|+++.|...+.++..+.. ....+..-.+.++...|+...|+..++.++...+
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P--------~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP--------DLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 456778889999999999999998888765521 1122345678999999999999999988776543
No 58
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=72.50 E-value=14 Score=40.22 Aligned_cols=64 Identities=11% Similarity=0.056 Sum_probs=53.4
Q ss_pred hHHHHHHHHHhhhcccccchhhhhhhhhccccCCccccccccHHHHHHHHHHHHHHhCCc---hhhhhHhhcccc
Q 000483 929 RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALANG 1000 (1464)
Q Consensus 929 ~~~v~~~~~~~l~~vPs~kfl~~ipQL~sRL~~~~~~~~~~~f~~~L~~Ll~~i~~~hP~---~~l~~l~~~~~~ 1000 (1464)
++.|.....+.+.+.|....+..+|||+..|.++.. ..|..+|.+.|+..+. +.+|.|.+.+..
T Consensus 84 ~~~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLryd~~--------~~l~~FLl~~A~~s~~faHql~W~lkae~~~ 150 (175)
T cd00871 84 HPLVLQYAVRVLESYPVETVFFYIPQIVQALRYDKM--------GYVEEYILETAKRSQLFAHQIIWNMQTNCYK 150 (175)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccc--------chHHHHHHHHHhhhHHHHHHHHHHHHHhccC
Confidence 567888999999999999999999999999998632 4688999999887654 788988886544
No 59
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=71.83 E-value=4.6 Score=44.22 Aligned_cols=48 Identities=27% Similarity=0.322 Sum_probs=36.1
Q ss_pred CCCCCCeeEEecCCCeEEEeecccccccccCCCCCCCCCcccccccccccccccccchhHHHHHHHHHHHhc
Q 000483 1288 GDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRT 1359 (1464)
Q Consensus 1288 GDRH~~NILld~~tG~v~hIDfg~~f~~g~~l~~pE~VPFRLT~niv~~mG~~g~eG~F~~~~~~t~~~Lr~ 1359 (1464)
+|-||+|||++ +|++.=||||.+..-. .| ...|.+++-++.++..+|+
T Consensus 142 rDlkP~NIll~--~~~~~liDFG~a~~~~----~~------------------~~~~~~~~~~~~~~~~~~~ 189 (190)
T cd05145 142 GDLSEYNILYH--DGKPYIIDVSQAVELD----HP------------------NALEFLRRDIRNINRFFRK 189 (190)
T ss_pred CCCChhhEEEE--CCCEEEEEcccceecC----CC------------------CHHHHHHHHHHHHHHHhhc
Confidence 79999999999 7999999999865321 11 3456677777777777665
No 60
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=69.08 E-value=21 Score=31.40 Aligned_cols=61 Identities=16% Similarity=-0.008 Sum_probs=45.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 000483 685 ESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 753 (1464)
Q Consensus 685 ~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~ 753 (1464)
..|...-+.|++..|.+.+.++... .|.+..+.+..+.+++.+|+...|+..++.++...+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3467888999999999998886433 133444568889999999999999999988776543
No 61
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=69.03 E-value=2.2e+02 Score=37.86 Aligned_cols=282 Identities=11% Similarity=0.072 Sum_probs=150.3
Q ss_pred HHHHHHHHHHhchhhHHHHhhHhHHHHhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhcc---------
Q 000483 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS--------- 405 (1464)
Q Consensus 335 ~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPD~~yGi~~~--------- 405 (1464)
+..+..+-.+||-+..|...++.- . .+.......|+..|.+-+++|.+..+...
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m----------~-------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGM----------P-------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC----------C-------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 455677778899999998877641 0 11234567899999999999998887531
Q ss_pred -cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhch
Q 000483 406 -HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGC 484 (1464)
Q Consensus 406 -~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~ 484 (1464)
.+....+..|-+.|++++|...|+...+.+ ..|+ ...+..++..+-..|.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g---------------~~~d--------------~~~~~~Li~~y~k~G~ 375 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTG---------------FPLD--------------IVANTALVDLYSKWGR 375 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhC---------------CCCC--------------eeehHHHHHHHHHCCC
Confidence 135678899999999999999999887754 1133 1234578888888887
Q ss_pred hhHHHHhhhccccccCCCCCCcchhHHHHHHHHhcCCCCCcccccCCCC-CCCcCcccchhhhhHHHHHHHH-hcCChHH
Q 000483 485 MHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANF-PSGQNIKSGHFHENLHSCLTAL-REGDSEE 562 (1464)
Q Consensus 485 ~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~-~~~~~~~~~~f~~~L~~~L~al-~~~d~~~ 562 (1464)
.+......+.+.... -..+. ....+-=+.|+++...... ... .....++...|... |.+. +.|+.++
T Consensus 376 ~~~A~~vf~~m~~~d-----~~t~n-~lI~~y~~~G~~~~A~~lf-~~M~~~g~~Pd~~T~~~l----l~a~~~~g~~~~ 444 (697)
T PLN03081 376 MEDARNVFDRMPRKN-----LISWN-ALIAGYGNHGRGTKAVEMF-ERMIAEGVAPNHVTFLAV----LSACRYSGLSEQ 444 (697)
T ss_pred HHHHHHHHHhCCCCC-----eeeHH-HHHHHHHHcCCHHHHHHHH-HHHHHhCCCCCHHHHHHH----HHHHhcCCcHHH
Confidence 666544433332110 00111 1122222344444222110 000 00112333344332 2233 5677777
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHH
Q 000483 563 FYRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLN 642 (1464)
Q Consensus 563 f~~~i~~aR~~l~~~Ls~~s~ES~~~~y~~lvrLq~L~ELe~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 642 (1464)
..+..+.....- .+ .-..+.|...=..+.|... ++++.++..+. |..|+ .
T Consensus 445 a~~~f~~m~~~~--g~-~p~~~~y~~li~~l~r~G~---~~eA~~~~~~~-----------------~~~p~-------~ 494 (697)
T PLN03081 445 GWEIFQSMSENH--RI-KPRAMHYACMIELLGREGL---LDEAYAMIRRA-----------------PFKPT-------V 494 (697)
T ss_pred HHHHHHHHHHhc--CC-CCCccchHhHHHHHHhcCC---HHHHHHHHHHC-----------------CCCCC-------H
Confidence 766666543210 01 0112334333333333333 44444432111 11112 1
Q ss_pred HHHHHHHHhhhh--chhhhhhHHHHHHHHHHhcccchHHHHHHHHHHHHHHhcCChhHHHHHHHHHhhh
Q 000483 643 TEWSSILKRTQL--HMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFL 709 (1464)
Q Consensus 643 ~~W~~rl~~~~~--~~~~~EpiL~~R~~vl~il~~~e~~~~~wl~~a~laRkag~~~~A~~aL~~l~~l 709 (1464)
..|...+..+.. +++.-+ . ..-+++++......+....+++.-++|+++.|...+.+++..
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~--~----~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGR--L----AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHH--H----HHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 358888877653 333222 1 222222222222334445567888999999999988877654
No 62
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=68.96 E-value=2.3e+02 Score=37.16 Aligned_cols=237 Identities=11% Similarity=0.085 Sum_probs=0.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhchhhH
Q 000483 408 LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHV 487 (1464)
Q Consensus 408 l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~ 487 (1464)
+.....-|...|++++|+..|+..+..+ |. ..+.+..+..++..+|.++.
T Consensus 334 ~~~lg~~~~~~g~~~eA~~~~~kal~l~-----------------P~-------------~~~~~~~la~~~~~~g~~~e 383 (615)
T TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIELD-----------------PR-------------VTQSYIKRASMNLELGDPDK 383 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------CC-------------cHHHHHHHHHHHHHCCCHHH
Q ss_pred HHHhhhccccccCCCCCCcchhHHHHHHHHhcCCCCCcccccCCCCCCCcCcccchhhhhHHHHHHHHhcCChHHHHHHH
Q 000483 488 LDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKL 567 (1464)
Q Consensus 488 L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~~L~al~~~d~~~f~~~i 567 (1464)
...+.+..... ....+...-....+...+|+|+.-..+... .-..........+..+......|+++.+...+
T Consensus 384 A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k----al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 384 AEEDFDKALKL---NSEDPDIYYHRAQLHFIKGEFAQAGKDYQK----SIDLDPDFIFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----HHHcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHHHHHHH
Q 000483 568 KHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSS 647 (1464)
Q Consensus 568 ~~aR~~l~~~Ls~~s~ES~~~~y~~lvrLq~L~ELe~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~ 647 (1464)
+.+... ........+..-.-+..+..++++.. .+++
T Consensus 457 ~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~------------------------------------~~~~ 492 (615)
T TIGR00990 457 RRCKKN--------FPEAPDVYNYYGELLLDQNKFDEAIE------------------------------------KFDT 492 (615)
T ss_pred HHHHHh--------CCCChHHHHHHHHHHHHccCHHHHHH------------------------------------HHHH
Q ss_pred HHHhhhhchhhhhhHHHHHHHHHHhcccchHHHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHH
Q 000483 648 ILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLE 727 (1464)
Q Consensus 648 rl~~~~~~~~~~EpiL~~R~~vl~il~~~e~~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE 727 (1464)
-+.....+-..+..++.+ +.....+.+..|++..|...+.++..+ .|....+.+.
T Consensus 493 Al~l~p~~~~~~~~~~~l-----------------~~~a~~~~~~~~~~~eA~~~~~kAl~l--------~p~~~~a~~~ 547 (615)
T TIGR00990 493 AIELEKETKPMYMNVLPL-----------------INKALALFQWKQDFIEAENLCEKALII--------DPECDIAVAT 547 (615)
T ss_pred HHhcCCccccccccHHHH-----------------HHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcHHHHHH
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh
Q 000483 728 EAKLLRAQGQHEMAINLAKYISE 750 (1464)
Q Consensus 728 ~Ak~lW~~Ge~~~Ai~~Lk~l~~ 750 (1464)
.|++++.+|+...|+..++..+.
T Consensus 548 la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 548 MAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
No 63
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=67.26 E-value=12 Score=33.12 Aligned_cols=56 Identities=20% Similarity=-0.011 Sum_probs=42.4
Q ss_pred HhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccC
Q 000483 691 RKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYES 754 (1464)
Q Consensus 691 Rkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~ 754 (1464)
-+.|+++.|...+.++.... |.+..+.+..|+++...|+.+.|..+++.+....+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 46788999999888775442 223345689999999999999999999888776543
No 64
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=66.03 E-value=5.7e+02 Score=36.40 Aligned_cols=79 Identities=22% Similarity=0.160 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhHH
Q 000483 682 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDV 761 (1464)
Q Consensus 682 ~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~ 761 (1464)
.+...+..+...|++..|...+.++..+.. .+..+.+..|.+++..|+...|+..++.++...+ ..++.
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P--------~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P---~~~~~ 531 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDP--------GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP---NDPEQ 531 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCHHH
Confidence 456678889999999999999888765522 1222457889999999999999999998876443 23444
Q ss_pred HHHHHHHHHH
Q 000483 762 YRLVGKWLAE 771 (1464)
Q Consensus 762 ~~llG~wlae 771 (1464)
+..+|.++.+
T Consensus 532 ~~a~al~l~~ 541 (1157)
T PRK11447 532 VYAYGLYLSG 541 (1157)
T ss_pred HHHHHHHHHh
Confidence 4455555443
No 65
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=62.17 E-value=83 Score=35.66 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=22.5
Q ss_pred eeccCCCCCCeeEEecCCCeEEEeecccc
Q 000483 1284 IVGLGDRHAMNILIDQATAEVVHIDLGVA 1312 (1464)
Q Consensus 1284 ilgLGDRH~~NILld~~tG~v~hIDfg~~ 1312 (1464)
++-=||=||.||+++. +| +.=|||+.+
T Consensus 154 ~~~HgD~~~~Nii~~~-~~-~~iIDwe~a 180 (226)
T TIGR02172 154 TCLHGDFQIGNLITSG-KG-TYWIDLGDF 180 (226)
T ss_pred ceEecCCCCCcEEEcC-CC-cEEEechhc
Confidence 3457999999999996 56 999999865
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=62.10 E-value=98 Score=36.74 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=63.2
Q ss_pred HHHHHHHHHhchhhHHHHhhHhHHHHhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhcc-----c----
Q 000483 336 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H---- 406 (1464)
Q Consensus 336 ~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPD~~yGi~~~-----~---- 406 (1464)
..+++.=.+-|+|-+|=-++....+. .+.++..-+|.++|..||+|..+--+... +
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---------------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT 291 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---------------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT 291 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---------------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh
Confidence 36788888888888876555442211 13467788999999999999987655321 1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000483 407 KLSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1464)
Q Consensus 407 ~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1464)
-+.-+.+-||-.|+.++|+..|...+...
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~ 320 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVLKLH 320 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 14467899999999999999999998854
No 67
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=61.15 E-value=5 Score=44.19 Aligned_cols=47 Identities=21% Similarity=0.336 Sum_probs=33.9
Q ss_pred CCCCCCeeEEecCCCeEEEeecccccccccCCCCCCCCCcccccccccccccccccchhHHHHHHHHHHHh
Q 000483 1288 GDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMR 1358 (1464)
Q Consensus 1288 GDRH~~NILld~~tG~v~hIDfg~~f~~g~~l~~pE~VPFRLT~niv~~mG~~g~eG~F~~~~~~t~~~Lr 1358 (1464)
||-+|+|||++ +|++.=||||.+-..+ .| +.+..+++-|+...+-.|
T Consensus 142 rDlkP~NIli~--~~~v~LiDFG~a~~~~----~~------------------~~~~~~~~d~~~~~~~f~ 188 (190)
T cd05147 142 ADLSEYNLLYH--DGKLYIIDVSQSVEHD----HP------------------HALEFLRMDCVNVNDFFR 188 (190)
T ss_pred CCCCHHHEEEE--CCcEEEEEccccccCC----Cc------------------CHHHHHHHHHHHHHHHhc
Confidence 89999999998 5999999999864322 22 245566776666666554
No 68
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=61.03 E-value=24 Score=36.00 Aligned_cols=55 Identities=13% Similarity=0.153 Sum_probs=39.2
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhchhhHHHHh
Q 000483 412 IVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMY 491 (1464)
Q Consensus 412 i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~~ 491 (1464)
...|...|+.++|..+|+..+..+.. + + ...+...++-.+|.++|..+.....
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~----------------~--------~---~~~~a~i~lastlr~LG~~deA~~~ 60 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLS----------------G--------A---DRRRALIQLASTLRNLGRYDEALAL 60 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC----------------c--------h---HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45688899999999999999985411 1 0 1234567888899999987765443
Q ss_pred hh
Q 000483 492 CK 493 (1464)
Q Consensus 492 ~~ 493 (1464)
.+
T Consensus 61 L~ 62 (120)
T PF12688_consen 61 LE 62 (120)
T ss_pred HH
Confidence 33
No 69
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.63 E-value=5.1e+02 Score=33.66 Aligned_cols=90 Identities=20% Similarity=0.184 Sum_probs=61.1
Q ss_pred ccCHHHHHHHHHHhchhhHHHHhhHhHHHHhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhh-hhhc-cc---
Q 000483 332 SVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLY-GIIQ-SH--- 406 (1464)
Q Consensus 332 ~Id~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPD~~y-Gi~~-~~--- 406 (1464)
+.|-+.+|..-.+-|-|..|+-|.-... . ++| ...+..-+|-.||.+..+-|.-. |... ..
T Consensus 48 ~~~~l~lah~~yq~gd~~~a~~h~nmv~----~----~d~------t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~ 113 (966)
T KOG4626|consen 48 SDDRLELAHRLYQGGDYKQAEKHCNMVG----Q----EDP------TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP 113 (966)
T ss_pred chhHHHHHHHHHhccCHHHHHHHHhHhh----c----cCC------Ccccceeeehhhhhcccchhhhhhhhhhhhhccc
Confidence 6678999999999999999987766522 1 111 12233446778999998888643 3321 11
Q ss_pred ----chhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000483 407 ----KLSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1464)
Q Consensus 407 ----~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1464)
.+....--|.--|+.++||..|+..++.+
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~ 146 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELK 146 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC
Confidence 12334456677799999999999999975
No 70
>KOG3365 consensus NADH:ubiquinone oxidoreductase, NDUFA5/B13 subunit [Energy production and conversion]
Probab=59.28 E-value=5.6 Score=40.67 Aligned_cols=37 Identities=22% Similarity=0.543 Sum_probs=32.7
Q ss_pred HHHHHHhhhcCCCCCCCcCHHHHHHHHHHHccCchhhhhhCcccccC
Q 000483 1417 ALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAW 1463 (1464)
Q Consensus 1417 ~l~rv~~KL~g~~~~~~lsv~~qV~~LI~~Atd~~NLa~m~~gW~pw 1463 (1464)
.++.++++|.| |||.++|.||-+.=|+.+|-..|.||
T Consensus 93 d~K~ledql~g----------GqIEE~i~qa~~el~m~~k~~~wk~w 129 (145)
T KOG3365|consen 93 DVKKLEDQLQG----------GQIEEVIEQAEAELNMGRKMFEWKPW 129 (145)
T ss_pred HHHHHHHHhcC----------CchHHHHHHHHHHHHHHhhhhccccc
Confidence 46667777776 68999999999999999999999999
No 71
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=54.91 E-value=16 Score=28.61 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=20.1
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhh
Q 000483 410 SQIVTLEHEGNWSKALEYYELQVRS 434 (1464)
Q Consensus 410 ~~i~~yE~eg~W~kAL~~Yd~~l~~ 434 (1464)
.....|.+.|+|++|..+|+.++..
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4557899999999999999996653
No 72
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=54.78 E-value=56 Score=29.22 Aligned_cols=59 Identities=17% Similarity=-0.062 Sum_probs=45.6
Q ss_pred HHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccC
Q 000483 688 STLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYES 754 (1464)
Q Consensus 688 ~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~ 754 (1464)
.++...++++.|...+-.+..+. |.+....+..|.++...|+...|+..++..+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--------PDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 56678889999998888775552 223344578999999999999999999888765553
No 73
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=54.77 E-value=11 Score=42.85 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=38.8
Q ss_pred hhcccchhhheeccCCCCCCeeEEecCCCeEEEeecccccccccCC
Q 000483 1274 SVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML 1319 (1464)
Q Consensus 1274 S~A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~g~~l 1319 (1464)
.+.-|+++=+++.=.|||..|||..+ +|+++-||=|+||.....|
T Consensus 134 ~l~riaVfDi~inNaDRk~GhiL~~~-dg~l~~IDHGl~f~~~~kl 178 (253)
T TIGR03843 134 QLRRMAVFDALVNNADRKGGHVLPGP-DGRVWGVDHGVCFHVEPKL 178 (253)
T ss_pred HHhhhhhheeeeecCCCCCCcEeEcC-CCcEEEecCceecCCCCcc
Confidence 45567888899999999999999997 8999999999999865444
No 74
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=54.23 E-value=4.6e+02 Score=31.55 Aligned_cols=94 Identities=22% Similarity=0.140 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhHHH
Q 000483 683 LLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVY 762 (1464)
Q Consensus 683 wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~~ 762 (1464)
+...+.+..+.|++..|...+.++..+... ... ..-.++++..+|+...|+..++..++..+ ....+.
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~--------~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P---~~~~~~ 319 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPG--------ADL-LLALAQLLEEQEGPEAAQALLREQLRRHP---SLRGFH 319 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------chH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCc---CHHHHH
Confidence 344466777889999999988876554211 111 25578999999999999999988776543 344555
Q ss_pred HHHHHHHHHh---hcCChHHHHHHhhhhh
Q 000483 763 RLVGKWLAES---RSSNSRIILENYLKPA 788 (1464)
Q Consensus 763 ~llG~wlae~---~~e~~~~I~~~Y~~~a 788 (1464)
.+++.++... +..+.-.+++..++..
T Consensus 320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 320 RLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 6677777644 3334444555555544
No 75
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=54.16 E-value=22 Score=31.43 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=39.5
Q ss_pred hhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhchhhHHHHhhhccc
Q 000483 417 HEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLT 496 (1464)
Q Consensus 417 ~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~~~~gl~ 496 (1464)
..|+|++|+..|+..++.. |+ +.+...++.+|+-..|.++......+.+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-----------------p~-------------~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-----------------PD-------------NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-----------------TT-------------SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHC-----------------CC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5799999999999999975 33 22356789999999999988876666654
Q ss_pred c
Q 000483 497 S 497 (1464)
Q Consensus 497 ~ 497 (1464)
.
T Consensus 53 ~ 53 (68)
T PF14559_consen 53 K 53 (68)
T ss_dssp G
T ss_pred H
Confidence 4
No 76
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=53.35 E-value=36 Score=34.25 Aligned_cols=63 Identities=24% Similarity=0.271 Sum_probs=42.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHH--hhcCChHHHHHHhhhhhhh
Q 000483 727 EEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAE--SRSSNSRIILENYLKPAVS 790 (1464)
Q Consensus 727 E~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~~~llG~wlae--~~~e~~~~I~~~Y~~~a~~ 790 (1464)
|.|+-+|++|++..|+.++++++...........++.+-|.-..+ ...++|+ +-..|+..+|+
T Consensus 1 e~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d-~k~~yLl~sve 65 (111)
T PF04781_consen 1 EKAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPD-VKFRYLLGSVE 65 (111)
T ss_pred ChHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCch-HHHHHHHHhHH
Confidence 468999999999999999999987765554444556666654422 2345553 44566665654
No 77
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=52.06 E-value=9.7 Score=48.18 Aligned_cols=38 Identities=32% Similarity=0.493 Sum_probs=28.3
Q ss_pred hhcccch--hhheeccCCCCCCeeEEecCCCeEEEeecccccc
Q 000483 1274 SVAASSM--VGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFE 1314 (1464)
Q Consensus 1274 S~A~~S~--vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~ 1314 (1464)
.||+=|+ +||| =-|--|+|||||+ .|.+=-.|||.|-+
T Consensus 739 tcAiesVHkmGFI--HRDiKPDNILIDr-dGHIKLTDFGLCTG 778 (1034)
T KOG0608|consen 739 TCAIESVHKMGFI--HRDIKPDNILIDR-DGHIKLTDFGLCTG 778 (1034)
T ss_pred HHHHHHHHhccce--ecccCccceEEcc-CCceeeeecccccc
Confidence 3455554 2333 3588899999997 99999999999854
No 78
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=51.34 E-value=1.2e+03 Score=35.53 Aligned_cols=107 Identities=19% Similarity=0.247 Sum_probs=70.9
Q ss_pred HHHHHHHHhhCCCchhhhhhhcccch--hhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCC
Q 000483 383 IEILVSAVTQINEPDSLYGIIQSHKL--SSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPS 460 (1464)
Q Consensus 383 ~e~L~~IY~~IdEPD~~yGi~~~~~l--~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 460 (1464)
.+...++|.+|.+-|+++|.+....+ ......|+..|.|..++..|+........ +.. |.
T Consensus 1126 ~~~~~~~~~~L~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~q~~~e~~~~k~~~-------~~~-----~~------ 1187 (2105)
T COG5032 1126 ALGKLELYSSLAEIDMFLSLHRRRKLLETLVATAYEQVGEWYKAQQLYEVAQRKARS-------KEF-----PF------ 1187 (2105)
T ss_pred HHHHHHHHHHHHHHhhhhccCcchhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhccc-------ccC-----ch------
Confidence 45678899999999999999987654 34557899999999999999998775422 000 11
Q ss_pred chhhhhhccchhhHHHHHHHhhchhhHHHHhhhccccccCCCCCCcchhHHHHHHHHhcCCCCC
Q 000483 461 TSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDF 524 (1464)
Q Consensus 461 ~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD~ 524 (1464)
+ .++..+ +.+.+.|+..+-+ ++ ... .-...+.++..+.+|+...|-.
T Consensus 1188 -s-~~~~~~--~~~~~~~a~~~~~--~~---~~~--------~~~~~~~~i~~~~~w~~a~~~~ 1234 (2105)
T COG5032 1188 -S-LQYLYW--HINDIDCADKLQS--VL---AEL--------SLVTGISELLLEESWRRALFSN 1234 (2105)
T ss_pred -h-hHHHHH--cccchhhHhhhhh--hh---hhc--------ccccchhhhccchhHHHHHhhh
Confidence 1 112333 3567777776653 11 111 0113566777888999888865
No 79
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=51.34 E-value=1.6e+02 Score=32.62 Aligned_cols=68 Identities=10% Similarity=-0.159 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHH-HcCC--hHHHHHHHHHHHhhcc
Q 000483 678 FTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLR-AQGQ--HEMAINLAKYISENYE 753 (1464)
Q Consensus 678 ~~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW-~~Ge--~~~Ai~~Lk~l~~~~~ 753 (1464)
.....|...+.++...|++..|..++.++..+.. .+.......|.++| ..|+ ...|+.+++..++..+
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P--------~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP 141 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG--------ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA 141 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 3577899999999999999999999988776632 12233467799875 5576 4899999987776543
No 80
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=50.29 E-value=13 Score=39.33 Aligned_cols=30 Identities=23% Similarity=0.148 Sum_probs=25.3
Q ss_pred hheeccCCCCCCeeEEecCCCeEEEeeccccc
Q 000483 1282 GYIVGLGDRHAMNILIDQATAEVVHIDLGVAF 1313 (1464)
Q Consensus 1282 gyilgLGDRH~~NILld~~tG~v~hIDfg~~f 1313 (1464)
.+.+.=||=||+||+++ .|++.-|||+.+-
T Consensus 106 ~~~~~HgD~~~~Nil~~--~~~~~liDf~~a~ 135 (170)
T cd05151 106 DLVPCHNDLLPGNFLLD--DGRLWLIDWEYAG 135 (170)
T ss_pred CceeecCCCCcCcEEEE--CCeEEEEeccccc
Confidence 55666799999999999 6889999999743
No 81
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=49.91 E-value=1.7e+02 Score=28.31 Aligned_cols=84 Identities=20% Similarity=0.144 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhHH
Q 000483 682 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDV 761 (1464)
Q Consensus 682 ~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~ 761 (1464)
.+.+.+....+.|++..|...+.++.... +.. +....+.+..+.++...|+...|+..++.++...+.....+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKS---TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCc---cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH
Confidence 45666778888999999999887765431 111 1111235778999999999999999999888766554444555
Q ss_pred HHHHHHHHH
Q 000483 762 YRLVGKWLA 770 (1464)
Q Consensus 762 ~~llG~wla 770 (1464)
+..+|.-+.
T Consensus 79 ~~~~~~~~~ 87 (119)
T TIGR02795 79 LLKLGMSLQ 87 (119)
T ss_pred HHHHHHHHH
Confidence 656565544
No 82
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=49.76 E-value=74 Score=28.14 Aligned_cols=63 Identities=10% Similarity=-0.130 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHh
Q 000483 680 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQG-QHEMAINLAKYISE 750 (1464)
Q Consensus 680 ~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~G-e~~~Ai~~Lk~l~~ 750 (1464)
...|...|..+...|++..|.....++-.+. |.+..+.+-.+.+.+.+| +...|+..++..++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4568888999999999999999888876553 223344567899999999 68999988765543
No 83
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=48.26 E-value=22 Score=27.00 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=24.2
Q ss_pred HHHHHHHhhhcCcchhhchHHHHHHHHhc
Q 000483 94 VLKILKKYLMDDSVQIVDMTSQTLRGILS 122 (1464)
Q Consensus 94 il~~l~~~l~~~~~~~~~~a~~~L~~ils 122 (1464)
||..+.+++.|++.+|+..|..||..|..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46677888999999999999999998753
No 84
>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]
Probab=47.44 E-value=1.1e+02 Score=34.07 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=25.4
Q ss_pred CCCCCCeeEEecCCCeE--EEeeccccccc
Q 000483 1288 GDRHAMNILIDQATAEV--VHIDLGVAFEQ 1315 (1464)
Q Consensus 1288 GDRH~~NILld~~tG~v--~hIDfg~~f~~ 1315 (1464)
||-..+||++....+++ +-||||..+-+
T Consensus 137 GDLTTSNill~~~~~~~~~~lIdfgls~~s 166 (229)
T KOG3087|consen 137 GDLTTSNILLRSDGNQITPILIDFGLSSVS 166 (229)
T ss_pred ccccccceEEecCCCcCceEEEeecchhcc
Confidence 89999999999999998 89999987754
No 85
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=46.75 E-value=44 Score=29.58 Aligned_cols=49 Identities=20% Similarity=0.360 Sum_probs=37.5
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhc-hhhH
Q 000483 409 SSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVG-CMHV 487 (1464)
Q Consensus 409 ~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG-~~~~ 487 (1464)
......|.+.|+|++|+.+|+..++.+ |+ +...+.++-.|+..+| .+..
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~~-----------------p~-------------~~~~~~~~g~~~~~~~~~~~~ 56 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIELD-----------------PN-------------NAEAYYNLGLAYMKLGKDYEE 56 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHS-----------------TT-------------HHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------CC-------------CHHHHHHHHHHHHHhCccHHH
Confidence 345678889999999999999999976 33 2335667888888888 5544
No 86
>TIGR03724 arch_bud32 Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.
Probab=46.23 E-value=15 Score=40.03 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.8
Q ss_pred cCCCCCCeeEEecCCCeEEEeecccc
Q 000483 1287 LGDRHAMNILIDQATAEVVHIDLGVA 1312 (1464)
Q Consensus 1287 LGDRH~~NILld~~tG~v~hIDfg~~ 1312 (1464)
=||-||.||+++ .|++.-||||.+
T Consensus 113 H~Dl~~~Nil~~--~~~~~liDfg~a 136 (199)
T TIGR03724 113 HGDLTTSNIIVR--DDKLYLIDFGLG 136 (199)
T ss_pred cCCCCcceEEEE--CCcEEEEECCCC
Confidence 499999999999 799999999864
No 87
>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]
Probab=45.13 E-value=15 Score=43.71 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.5
Q ss_pred CCCCCCeeEEecCCCeEEEeecccccccc
Q 000483 1288 GDRHAMNILIDQATAEVVHIDLGVAFEQG 1316 (1464)
Q Consensus 1288 GDRH~~NILld~~tG~v~hIDfg~~f~~g 1316 (1464)
-|-.|+||||+. +|.+=-+|||.+-..+
T Consensus 144 RDLKPQNlLi~~-~G~lKlaDFGlAra~~ 171 (323)
T KOG0594|consen 144 RDLKPQNLLISS-SGVLKLADFGLARAFS 171 (323)
T ss_pred ccCCcceEEECC-CCcEeeeccchHHHhc
Confidence 688999999997 9999999999876443
No 88
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=44.86 E-value=30 Score=40.21 Aligned_cols=86 Identities=19% Similarity=0.180 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHhchhhHHHHhhHhHHHHhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhcc----c---
Q 000483 334 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS----H--- 406 (1464)
Q Consensus 334 d~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPD~~yGi~~~----~--- 406 (1464)
++..++.. ..=+-|.+|+-++|...++. ..+.....++.+|.+.++.+.+..+... .
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~---------------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERD---------------GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAP 143 (280)
T ss_dssp ------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---
T ss_pred cccccccc-cccccccccccccccccccc---------------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC
Confidence 45555555 56788888888887643221 1134455677778888888777777542 1
Q ss_pred -c---hhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000483 407 -K---LSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1464)
Q Consensus 407 -~---l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1464)
+ +-.....|++.|++++|+.+|+..+...
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~ 176 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELD 176 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 1 2345678999999999999999999976
No 89
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=44.63 E-value=75 Score=28.91 Aligned_cols=71 Identities=11% Similarity=-0.142 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000483 678 FTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYIS 749 (1464)
Q Consensus 678 ~~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~ 749 (1464)
.+...+...|.+.+..|+++.|...+.+...+.... +...+.........|.+.-..|+.+.|+..++..+
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQL-GDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356677788999999999999998877766552111 11112223334677889999999999999886543
No 90
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=44.09 E-value=18 Score=39.75 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=26.0
Q ss_pred eccCCCCCCeeEEecCCCeEEEeecccccccc
Q 000483 1285 VGLGDRHAMNILIDQATAEVVHIDLGVAFEQG 1316 (1464)
Q Consensus 1285 lgLGDRH~~NILld~~tG~v~hIDfg~~f~~g 1316 (1464)
+-=||-+|+||+++. +|++.=||||.++..+
T Consensus 146 i~H~Dl~p~Nill~~-~~~~~liDfg~~~~~~ 176 (198)
T cd05144 146 IIHGDLSEFNILVDD-DEKIYIIDWPQMVSTD 176 (198)
T ss_pred CCcCCCCcccEEEcC-CCcEEEEECCccccCC
Confidence 334799999999996 8999999999986644
No 91
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=43.99 E-value=1.6e+02 Score=35.33 Aligned_cols=98 Identities=20% Similarity=0.272 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHhhhhchhhhhhHHHHHHHHHH------h----------cc---------------cchHHHHHHHHHH
Q 000483 639 SWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQ------I----------LS---------------CKDFTMQHLLESA 687 (1464)
Q Consensus 639 ~~l~~~W~~rl~~~~~~~~~~EpiL~~R~~vl~------i----------l~---------------~~e~~~~~wl~~a 687 (1464)
+.+.+.|++.+..-..++.+|..+|.+++.=+. + |. ..+.+....++.+
T Consensus 82 ~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~ 161 (321)
T PF08424_consen 82 EKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLC 161 (321)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Confidence 346677887777666677888877777755211 1 10 1234667788899
Q ss_pred HHHHhcCChhHHHHHHHHHhhhcC-CCCCCCchhhhhHHHHHHHHHHHcCC
Q 000483 688 STLRKGFRLSQAAAALHELKFLYT-GPGDQCSTVYWLGRLEEAKLLRAQGQ 737 (1464)
Q Consensus 688 ~laRkag~~~~A~~aL~~l~~l~~-~~~~q~~~~~~~~~lE~Ak~lW~~Ge 737 (1464)
...|.+|+...|.+.+-.+..+.. .+........ ..+++.-.-+|+.|-
T Consensus 162 ~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~-~~~~~~fe~FWeS~v 211 (321)
T PF08424_consen 162 RFLRQAGYTERAVALWQALLEFNFFRPESLSSSSF-SERLESFEEFWESEV 211 (321)
T ss_pred HHHHHCCchHHHHHHHHHHHHHHcCCccccccccH-HHHHHHHHHHhCcCC
Confidence 999999999999887555444432 1111111110 145677778888864
No 92
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=43.53 E-value=15 Score=46.78 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=22.2
Q ss_pred CCCCCCeeEEecCCCeEEEeecccc
Q 000483 1288 GDRHAMNILIDQATAEVVHIDLGVA 1312 (1464)
Q Consensus 1288 GDRH~~NILld~~tG~v~hIDfg~~ 1312 (1464)
+|-||+||+++. .|+++-+|||..
T Consensus 289 aDpHpGNi~v~~-~g~i~~lDfGi~ 312 (517)
T COG0661 289 ADPHPGNILVRS-DGRIVLLDFGIV 312 (517)
T ss_pred cCCCccceEEec-CCcEEEEcCcce
Confidence 899999999997 699999999974
No 93
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=42.59 E-value=15 Score=47.13 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.1
Q ss_pred cCCCCCCeeEEecCCC----eEEEeecccc
Q 000483 1287 LGDRHAMNILIDQATA----EVVHIDLGVA 1312 (1464)
Q Consensus 1287 LGDRH~~NILld~~tG----~v~hIDfg~~ 1312 (1464)
=+|=||+||+++. .| +++-+|||+.
T Consensus 283 HaDpHPGNIlv~~-~g~~~~~i~llDFGiv 311 (537)
T PRK04750 283 HADMHPGNIFVSY-DPPENPRYIALDFGIV 311 (537)
T ss_pred eCCCChHHeEEec-CCCCCCeEEEEecceE
Confidence 4899999999996 55 9999999986
No 94
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=42.30 E-value=16 Score=41.66 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.2
Q ss_pred CCCCCCeeEEecCCCeEEEeecccc
Q 000483 1288 GDRHAMNILIDQATAEVVHIDLGVA 1312 (1464)
Q Consensus 1288 GDRH~~NILld~~tG~v~hIDfg~~ 1312 (1464)
||=||+||+++. .| ++-||||..
T Consensus 159 ~Dikp~Nili~~-~g-i~liDfg~~ 181 (232)
T PRK10359 159 GDPHKGNFIVSK-NG-LRIIDLSGK 181 (232)
T ss_pred CCCChHHEEEeC-CC-EEEEECCCc
Confidence 799999999986 67 999999853
No 95
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=41.39 E-value=18 Score=38.93 Aligned_cols=26 Identities=42% Similarity=0.535 Sum_probs=23.0
Q ss_pred cCCCCCCeeEEecCCCeEEEeecccccc
Q 000483 1287 LGDRHAMNILIDQATAEVVHIDLGVAFE 1314 (1464)
Q Consensus 1287 LGDRH~~NILld~~tG~v~hIDfg~~f~ 1314 (1464)
=||-||+||+++ +|.+.=||||.+-.
T Consensus 138 H~Dl~p~Nili~--~~~~~liDfg~a~~ 163 (187)
T cd05119 138 HGDLSEYNILVD--DGKVYIIDVPQAVE 163 (187)
T ss_pred cCCCChhhEEEE--CCcEEEEECccccc
Confidence 479999999999 89999999998743
No 96
>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane
Probab=40.75 E-value=46 Score=37.04 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCC--------CceeEEcCCCCchHHHhhh
Q 000483 1148 AVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPS--------AGILEWVDGTVPLGDYLIG 1204 (1464)
Q Consensus 1148 ~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~--------~GlIE~v~~t~tl~~il~~ 1204 (1464)
.+..+=+..++.+.+ ..|.|+.+|-.... .=+.|.++++.+|.+++..
T Consensus 56 ~ra~~E~~~~~~L~~---------~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~ 111 (206)
T PF06293_consen 56 SRAKREWRNLQRLRE---------AGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQ 111 (206)
T ss_pred hHHHHHHHHHHHHHH---------cCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHh
Confidence 345555555555554 46888888877665 2267899999999988753
No 97
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=40.25 E-value=2.7e+02 Score=29.84 Aligned_cols=86 Identities=15% Similarity=0.140 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhchhhHHHHhhHhHHHHhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhcc-----cc--
Q 000483 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----HK-- 407 (1464)
Q Consensus 335 ~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPD~~yGi~~~-----~~-- 407 (1464)
+..+|.....-+-|..|+-+++..++.. |. .....-.+-.+|...+++|........ +.
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~--------p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD--------PD------DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--------cc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 4567888888899999999998754321 11 123445567777778887776665431 11
Q ss_pred --hhhHHHHHHhhCCHHHHHHHHHHHHhh
Q 000483 408 --LSSQIVTLEHEGNWSKALEYYELQVRS 434 (1464)
Q Consensus 408 --l~~~i~~yE~eg~W~kAL~~Yd~~l~~ 434 (1464)
......-|...|++++|+.+|+..+..
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIED 128 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 123345677788888888888887763
No 98
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=40.06 E-value=55 Score=28.67 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=37.8
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhchhhHHHH
Q 000483 411 QIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDM 490 (1464)
Q Consensus 411 ~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~ 490 (1464)
+...|-..|++++|...|+..++.. |. +.+...++-+|+...|.+.....
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-----------------P~-------------~~~a~~~lg~~~~~~g~~~~A~~ 52 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-----------------PD-------------NPEAWYLLGRILYQQGRYDEALA 52 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-----------------TT-------------HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-----------------CC-------------CHHHHHHHHHHHHHcCCHHHHHH
Confidence 4567889999999999999999965 33 33456788889999998765533
No 99
>PRK14879 serine/threonine protein kinase; Provisional
Probab=39.50 E-value=22 Score=39.12 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=22.1
Q ss_pred cCCCCCCeeEEecCCCeEEEeeccccc
Q 000483 1287 LGDRHAMNILIDQATAEVVHIDLGVAF 1313 (1464)
Q Consensus 1287 LGDRH~~NILld~~tG~v~hIDfg~~f 1313 (1464)
=||-+|.|||++ .|.+.-||||.+-
T Consensus 118 H~Dl~p~Nil~~--~~~~~liDf~~a~ 142 (211)
T PRK14879 118 HGDLTTSNMILS--GGKIYLIDFGLAE 142 (211)
T ss_pred cCCCCcccEEEE--CCCEEEEECCccc
Confidence 389999999999 7999999999753
No 100
>smart00090 RIO RIO-like kinase.
Probab=38.80 E-value=21 Score=40.78 Aligned_cols=28 Identities=36% Similarity=0.490 Sum_probs=24.2
Q ss_pred cCCCCCCeeEEecCCCeEEEeecccccccc
Q 000483 1287 LGDRHAMNILIDQATAEVVHIDLGVAFEQG 1316 (1464)
Q Consensus 1287 LGDRH~~NILld~~tG~v~hIDfg~~f~~g 1316 (1464)
=||=+|+||+++ +|++.=||||.+...+
T Consensus 172 H~Dikp~NIli~--~~~i~LiDFg~a~~~~ 199 (237)
T smart00090 172 HGDLSEYNILVH--DGKVVIIDVSQSVELD 199 (237)
T ss_pred eCCCChhhEEEE--CCCEEEEEChhhhccC
Confidence 379999999999 8999999999876544
No 101
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=37.21 E-value=22 Score=44.45 Aligned_cols=24 Identities=25% Similarity=0.592 Sum_probs=22.1
Q ss_pred CCCCCCeeEEecCCCeEEEeecccc
Q 000483 1288 GDRHAMNILIDQATAEVVHIDLGVA 1312 (1464)
Q Consensus 1288 GDRH~~NILld~~tG~v~hIDfg~~ 1312 (1464)
||=||+||+++. +|+++=+|||.+
T Consensus 281 ~D~hPgNilv~~-~g~i~liDfG~~ 304 (437)
T TIGR01982 281 ADLHPGNIFVLK-DGKIIALDFGIV 304 (437)
T ss_pred CCCCcccEEECC-CCcEEEEeCCCe
Confidence 799999999975 899999999975
No 102
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=36.93 E-value=1e+02 Score=25.16 Aligned_cols=31 Identities=23% Similarity=0.132 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhccCC
Q 000483 725 RLEEAKLLRAQGQHEMAINLAKYISENYESN 755 (1464)
Q Consensus 725 ~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~ 755 (1464)
.+..|+.++..|+.+.|+.+++.+++..+.+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3667999999999999999999998866543
No 103
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=36.79 E-value=2.4e+02 Score=24.59 Aligned_cols=62 Identities=16% Similarity=-0.112 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 000483 683 LLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 752 (1464)
Q Consensus 683 wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~ 752 (1464)
|...|......|++..|...+.++..... ....+.+..|.+++..|+...|+..++..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 64 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP--------DNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45667778889999999988877644321 111335678999999999999999988776543
No 104
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=36.53 E-value=2.8e+02 Score=37.75 Aligned_cols=107 Identities=26% Similarity=0.344 Sum_probs=75.0
Q ss_pred CCceeeEEEecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceeEEcCCCCchHHHhhhhccC
Q 000483 1129 DGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRN 1208 (1464)
Q Consensus 1129 dG~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GlIE~v~~t~tl~~il~~~~~~ 1208 (1464)
||+ +.+.|| .+++-|+...+++..+|.-... ..+++++|+.-+ +-|-.|||+.. +..+
T Consensus 112 ~g~--kivYKP--r~l~~d~~f~~~l~~ln~~~~~--------~~~~~~~~l~~~-~ygw~EfI~~~-~c~~-------- 169 (825)
T cd04792 112 SGL--KLVYKP--RSLSVDALFQELLEWLNSFLGA--------LPLRTPKVLDRG-DYGWEEFIEHQ-PCQS-------- 169 (825)
T ss_pred CCC--EEEECC--CCchHHHHHHHHHHHHHhcCCc--------cccccceeeecC-CcceEEeecCC-CCCC--------
Confidence 555 457786 6999999999999999875432 234788888755 56999999761 1100
Q ss_pred CCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhcccchhhheeccC
Q 000483 1209 GGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLG 1288 (1464)
Q Consensus 1209 ~~~~~r~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyilgLG 1288 (1464)
.. + -.+|=+-++.+-.+.|+||-.
T Consensus 170 -----------------------~~-------e--------------------------~~~fY~r~G~llal~y~L~~t 193 (825)
T cd04792 170 -----------------------KE-------E--------------------------VERYYYRLGGLLALLYLLNAT 193 (825)
T ss_pred -----------------------HH-------H--------------------------HHHHHHHHHHHHHHHHHcCCc
Confidence 00 0 013445677788899999999
Q ss_pred CCCCCeeEEecCCCeEEEeeccccccc
Q 000483 1289 DRHAMNILIDQATAEVVHIDLGVAFEQ 1315 (1464)
Q Consensus 1289 DRH~~NILld~~tG~v~hIDfg~~f~~ 1315 (1464)
|-|-+||.-+ -+..|=||+--+|..
T Consensus 194 D~H~ENiIA~--g~~PvlIDlETlf~~ 218 (825)
T cd04792 194 DLHFENIIAS--GEYPVLIDLETLFHP 218 (825)
T ss_pred ccchhhheee--CCCceEEeeHHhcCC
Confidence 9999999544 366788888766654
No 105
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=34.86 E-value=2.2e+02 Score=28.64 Aligned_cols=67 Identities=18% Similarity=-0.029 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 000483 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 753 (1464)
Q Consensus 679 ~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~ 753 (1464)
....|...+....+.|++..|...+.++..+.. ......+..|.+++..|+...|+..++..++..+
T Consensus 50 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 50 NSRYWLGLAACCQMLKEYEEAIDAYALAAALDP--------DDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 345667778888899999999888777644421 1222346789999999999999999987776543
No 106
>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily.; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....
Probab=34.66 E-value=28 Score=38.39 Aligned_cols=33 Identities=30% Similarity=0.340 Sum_probs=24.0
Q ss_pred hhhheeccCCCCCCeeEEecCCCeEEEeecccc
Q 000483 1280 MVGYIVGLGDRHAMNILIDQATAEVVHIDLGVA 1312 (1464)
Q Consensus 1280 ~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~ 1312 (1464)
-....+.=||=||+|||++...|+|--|||+.+
T Consensus 163 ~~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a 195 (239)
T PF01636_consen 163 PLPPVLIHGDLHPGNILVDPSDGRIGIIDFEDA 195 (239)
T ss_dssp CSCEEEE-SS-SGGGEEEESSTTEEEE--GTT-
T ss_pred CCCcEEEEeccccccceeeeccceeEEEecccc
Confidence 467788889999999999976788879999865
No 107
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=34.58 E-value=22 Score=41.54 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.2
Q ss_pred CCCCCCeeEEecCCCeEEEeecccccc
Q 000483 1288 GDRHAMNILIDQATAEVVHIDLGVAFE 1314 (1464)
Q Consensus 1288 GDRH~~NILld~~tG~v~hIDfg~~f~ 1314 (1464)
-|--|+|||||+ +|.+=-+|||++=.
T Consensus 168 RDLKPENiLlD~-~G~iKitDFGFAK~ 193 (355)
T KOG0616|consen 168 RDLKPENLLLDQ-NGHIKITDFGFAKR 193 (355)
T ss_pred ccCChHHeeecc-CCcEEEEeccceEE
Confidence 488999999996 99999999998754
No 108
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=33.92 E-value=1.6e+02 Score=34.01 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhchhhHHHHhhHhHHHHhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhc--------cc
Q 000483 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ--------SH 406 (1464)
Q Consensus 335 ~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPD~~yGi~~--------~~ 406 (1464)
+...|....+.|-+..|+-+.+..++.. | ..++....|.-++-..++.+-+--+.. .+
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~--------P------~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~ 214 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALELD--------P------DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP 214 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH---------T------T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--------C------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH
Confidence 3567888899999999999999877553 2 124455667777777777775333321 12
Q ss_pred c-hhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000483 407 K-LSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1464)
Q Consensus 407 ~-l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1464)
. ......-|...|+.++|+.+|+..+...
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcccccccccccccccccccc
Confidence 2 2466789999999999999999998865
No 109
>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.
Probab=33.75 E-value=16 Score=40.23 Aligned_cols=27 Identities=41% Similarity=0.650 Sum_probs=20.9
Q ss_pred CCCCCCeeEEecCCCeEEEeecccccccc
Q 000483 1288 GDRHAMNILIDQATAEVVHIDLGVAFEQG 1316 (1464)
Q Consensus 1288 GDRH~~NILld~~tG~v~hIDfg~~f~~g 1316 (1464)
||-++.|||++. |+++-||||-+++..
T Consensus 131 GDLs~~NIlv~~--~~~~iIDf~qav~~~ 157 (188)
T PF01163_consen 131 GDLSEYNILVDD--GKVYIIDFGQAVDSS 157 (188)
T ss_dssp SS-STTSEEEET--TCEEE--GTTEEETT
T ss_pred cCCChhhEEeec--ceEEEEecCcceecC
Confidence 999999999996 599999999887754
No 110
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=33.65 E-value=61 Score=24.50 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=21.7
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000483 410 SQIVTLEHEGNWSKALEYYELQVRSD 435 (1464)
Q Consensus 410 ~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1464)
....-|.+.|++++|+.+|+..++.+
T Consensus 6 ~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 6 NLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 34568899999999999999999975
No 111
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=33.16 E-value=8.4e+02 Score=33.04 Aligned_cols=153 Identities=16% Similarity=0.157 Sum_probs=0.0
Q ss_pred hhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHhhcCChHHHHHHhhh
Q 000483 707 KFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLK 786 (1464)
Q Consensus 707 ~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~~~llG~wlae~~~e~~~~I~~~Y~~ 786 (1464)
+........+..+.+....+-+|+.+.+.|+.+.|..++.++++..+.+ ...+..||.--.+-+ +-..-..-.+.
T Consensus 124 k~~~~~r~~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~---~~ay~tL~~IyEqrG--d~eK~l~~~ll 198 (895)
T KOG2076|consen 124 KRGRRSRGKSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRN---PIAYYTLGEIYEQRG--DIEKALNFWLL 198 (895)
T ss_pred ccCCCCCcccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccc---hhhHHHHHHHHHHcc--cHHHHHHHHHH
Q ss_pred hhhhcccccccchhHHHHhhhhhhhhHHHhHHHHHHhHHHHhhhHHHHHHHHHHHhhHHHHHHHHHHhhhcCcCccchhh
Q 000483 787 PAVSFSEDQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYS 866 (1464)
Q Consensus 787 ~a~~~~~~~~~~~~~~~~~~~~~~~~lA~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~ 866 (1464)
.| +...++.. -|..+|.+..++
T Consensus 199 AA---HL~p~d~e---------~W~~ladls~~~---------------------------------------------- 220 (895)
T KOG2076|consen 199 AA---HLNPKDYE---------LWKRLADLSEQL---------------------------------------------- 220 (895)
T ss_pred HH---hcCCCChH---------HHHHHHHHHHhc----------------------------------------------
Q ss_pred HHHHHHHHHHhhhHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHhhhcCchHHHHHHHHHhhhccccc
Q 000483 867 IKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQSY 946 (1464)
Q Consensus 867 ~~~~~~~~~~~~d~~e~~~l~~~~~~fl~~Al~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~~~~v~~~~~~~l~~vPs~ 946 (1464)
.++.+|.-+|-++|.+... +.+.+.+=.+|.-+.|+.....+...+.+...|..
T Consensus 221 -------------------------~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~ 274 (895)
T KOG2076|consen 221 -------------------------GNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV 274 (895)
T ss_pred -------------------------ccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch
Q ss_pred ch
Q 000483 947 KF 948 (1464)
Q Consensus 947 kf 948 (1464)
-|
T Consensus 275 d~ 276 (895)
T KOG2076|consen 275 DI 276 (895)
T ss_pred hH
No 112
>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]
Probab=32.51 E-value=30 Score=44.20 Aligned_cols=40 Identities=23% Similarity=0.100 Sum_probs=30.3
Q ss_pred cccchhhheeccCCCCCCeeEEecCCCeEEEeeccccccc
Q 000483 1276 AASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQ 1315 (1464)
Q Consensus 1276 A~~S~vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~~ 1315 (1464)
|+-.+=+.=.=.+|-||+|||++..-|.+--+|||..-+.
T Consensus 427 Av~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~ 466 (612)
T KOG0603|consen 427 AVDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSEL 466 (612)
T ss_pred HHHHHHhcCeeecCCChhheeecCCCCcEEEEEechhhhC
Confidence 3334444445579999999999767899999999987653
No 113
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=32.28 E-value=1.2e+03 Score=30.65 Aligned_cols=169 Identities=15% Similarity=0.172 Sum_probs=90.2
Q ss_pred chhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHhhcCChHHHHHHhhhhhhhccccccc
Q 000483 718 STVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSEDQRT 797 (1464)
Q Consensus 718 ~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~~~llG~wlae~~~e~~~~I~~~Y~~~a~~~~~~~~~ 797 (1464)
.|.-|-+ ..+++=-|++|+.||...+.-++ ..+..+-+|.++|+=...+ +.-+.-..||.+|+.+.. .
T Consensus 420 sPesWca---~GNcfSLQkdh~~Aik~f~RAiQ---ldp~faYayTLlGhE~~~~---ee~d~a~~~fr~Al~~~~---r 487 (638)
T KOG1126|consen 420 SPESWCA---LGNCFSLQKDHDTAIKCFKRAIQ---LDPRFAYAYTLLGHESIAT---EEFDKAMKSFRKALGVDP---R 487 (638)
T ss_pred CcHHHHH---hcchhhhhhHHHHHHHHHHHhhc---cCCccchhhhhcCChhhhh---HHHHhHHHHHHhhhcCCc---h
Confidence 4555522 36777779999999988765443 2344567788999644432 344556678888875421 1
Q ss_pred chhHHHHhhhhhhhhHHHhHHHHHHhHHHHhhhHHHHHHHHHHHhhHHHHHHHHHHhhhcCcCccchhhHHHHHHHHHHh
Q 000483 798 TDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQKQLA 877 (1464)
Q Consensus 798 ~~~~~~~~~~~~~~~lA~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (1464)
.=.|||-++. . |++.+.++.++-- +.+.+.-+.. ..-...++.....
T Consensus 488 --------hYnAwYGlG~----v------y~Kqek~e~Ae~~----------fqkA~~INP~--nsvi~~~~g~~~~--- 534 (638)
T KOG1126|consen 488 --------HYNAWYGLGT----V------YLKQEKLEFAEFH----------FQKAVEINPS--NSVILCHIGRIQH--- 534 (638)
T ss_pred --------hhHHHHhhhh----h------eeccchhhHHHHH----------HHhhhcCCcc--chhHHhhhhHHHH---
Confidence 1235554442 1 1222222211100 1111110000 0000001111111
Q ss_pred hhHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHhhhcCchHHHHHHHHHhhhccc
Q 000483 878 MDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQ 944 (1464)
Q Consensus 878 ~d~~e~~~l~~~~~~fl~~Al~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~~~~v~~~~~~~l~~vP 944 (1464)
+...-.+||.-|=+++.+..+..+. .+.--.+-|..+.+++....+++.-.-+|
T Consensus 535 ------------~~k~~d~AL~~~~~A~~ld~kn~l~-~~~~~~il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 535 ------------QLKRKDKALQLYEKAIHLDPKNPLC-KYHRASILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred ------------HhhhhhHHHHHHHHHHhcCCCCchh-HHHHHHHHHhhcchHHHHHHHHHHHHhCc
Confidence 1223347899999999998887764 66666777888777777766666666666
No 114
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=31.43 E-value=3.7e+02 Score=29.78 Aligned_cols=82 Identities=20% Similarity=0.121 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhH
Q 000483 681 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPD 760 (1464)
Q Consensus 681 ~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~ 760 (1464)
+.+-+.|..+=..|++..|...+..+...- +.+.. ...+.+..|......|+...|+...+.++.+++.++....
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~---a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRY--PNSPY---APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCChH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence 445556777888999999999988876431 11111 1134688899999999999999999999999988888888
Q ss_pred HHHHHHH
Q 000483 761 VYRLVGK 767 (1464)
Q Consensus 761 ~~~llG~ 767 (1464)
++.++|.
T Consensus 81 A~Y~~g~ 87 (203)
T PF13525_consen 81 ALYMLGL 87 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777774
No 115
>PRK12274 serine/threonine protein kinase; Provisional
Probab=31.41 E-value=36 Score=38.45 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.9
Q ss_pred CCC-CCCeeEEecCCCeEEEeeccccc
Q 000483 1288 GDR-HAMNILIDQATAEVVHIDLGVAF 1313 (1464)
Q Consensus 1288 GDR-H~~NILld~~tG~v~hIDfg~~f 1313 (1464)
+|- .|+|||++. .|++.=||||.+-
T Consensus 115 rDL~kp~NILv~~-~g~i~LIDFG~A~ 140 (218)
T PRK12274 115 NDLAKEANWLVQE-DGSPAVIDFQLAV 140 (218)
T ss_pred CCCCCcceEEEcC-CCCEEEEECCCce
Confidence 888 589999995 8999999999864
No 116
>PRK09550 mtnK methylthioribose kinase; Reviewed
Probab=31.37 E-value=6.5e+02 Score=31.31 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=24.6
Q ss_pred hheeccCCCCCCeeEEecCCCeEEEeeccccc
Q 000483 1282 GYIVGLGDRHAMNILIDQATAEVVHIDLGVAF 1313 (1464)
Q Consensus 1282 gyilgLGDRH~~NILld~~tG~v~hIDfg~~f 1313 (1464)
+..|-=||=|+.|||+.. +.+.-|||-++|
T Consensus 222 ~~~l~HgDl~~gni~~~~--~~~~viD~E~a~ 251 (401)
T PRK09550 222 AEALLHGDLHTGSIFVTE--EETKVIDPEFAF 251 (401)
T ss_pred CCceeeccCCcccEEeeC--CCcEEEeccccc
Confidence 344888999999999985 469999997665
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=30.94 E-value=2e+02 Score=38.37 Aligned_cols=117 Identities=16% Similarity=0.177 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhchhhHHHHhhHhHHHHhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhcc------cc-
Q 000483 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS------HK- 407 (1464)
Q Consensus 335 ~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPD~~yGi~~~------~~- 407 (1464)
+..||.+++++|.|.-|+..+|..++.. |++ ....-.+..|-.+.+..|.+-..... .+
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~--------Pd~------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~ 154 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQRF--------PDS------SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA 154 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhC--------CCc------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Confidence 5689999999999999999999866432 332 12222344555666666666555431 11
Q ss_pred --hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhchh
Q 000483 408 --LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 485 (1464)
Q Consensus 408 --l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~ 485 (1464)
+.....-..+.|+.++|.+.|+..+... |+ ..+...++-.+|..+|..
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-----------------p~-------------~~~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFERLSRQH-----------------PE-------------FENGYVGWAQSLTRRGAL 204 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhcC-----------------CC-------------cHHHHHHHHHHHHHcCCH
Confidence 2345578899999999999999999843 33 223567888899999975
Q ss_pred hHH-HHhhhcc
Q 000483 486 HVL-DMYCKGL 495 (1464)
Q Consensus 486 ~~L-~~~~~gl 495 (1464)
+-. ..|.+.+
T Consensus 205 ~~A~~~~~~a~ 215 (694)
T PRK15179 205 WRARDVLQAGL 215 (694)
T ss_pred HHHHHHHHHHH
Confidence 443 4444443
No 118
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=30.91 E-value=34 Score=39.10 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=22.3
Q ss_pred cCCCCCCeeEEecCCCeEEEeeccccc
Q 000483 1287 LGDRHAMNILIDQATAEVVHIDLGVAF 1313 (1464)
Q Consensus 1287 LGDRH~~NILld~~tG~v~hIDfg~~f 1313 (1464)
=+|-+|+|||++. +|++.=||||.+-
T Consensus 165 HrDlkp~NILv~~-~~~v~LIDfg~~~ 190 (239)
T PRK01723 165 HADLNAHNILLDP-DGKFWLIDFDRGE 190 (239)
T ss_pred CCCCCchhEEEcC-CCCEEEEECCCcc
Confidence 4799999999996 7899999999643
No 119
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.06 E-value=41 Score=37.17 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=25.4
Q ss_pred CCceeccceEEEcCCCCce--eEEcCCCCchHHHhh
Q 000483 1170 RRLGVRTYKVVPFTPSAGI--LEWVDGTVPLGDYLI 1203 (1464)
Q Consensus 1170 r~L~i~tY~ViPLs~~~Gl--IE~v~~t~tl~~il~ 1203 (1464)
+.+.+.+|.|.-+-|..|+ +|+|++. .+.+++.
T Consensus 57 ~~~GV~~P~v~dvD~~~~~I~me~I~G~-~lkd~l~ 91 (204)
T COG3642 57 REAGVPVPIVYDVDPDNGLIVMEYIEGE-LLKDALE 91 (204)
T ss_pred HHcCCCCCeEEEEcCCCCEEEEEEeCCh-hHHHHHH
Confidence 3568999999999999975 5899884 4665553
No 120
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=29.95 E-value=73 Score=23.79 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=21.5
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000483 411 QIVTLEHEGNWSKALEYYELQVRSDV 436 (1464)
Q Consensus 411 ~i~~yE~eg~W~kAL~~Yd~~l~~~~ 436 (1464)
....|.+.|+|++|..+|+..++..|
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 45678999999999999999999753
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=29.04 E-value=4e+02 Score=29.68 Aligned_cols=85 Identities=20% Similarity=0.080 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchh
Q 000483 680 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAP 759 (1464)
Q Consensus 680 ~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a 759 (1464)
...+...+..+.+.|+++.|...+.++...... .+....+.+..|.++-..|+...|+..++.++...+.+....
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPF-----SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 445666778888999999999988877544211 111112346779999999999999999999988777665555
Q ss_pred HHHHHHHHHH
Q 000483 760 DVYRLVGKWL 769 (1464)
Q Consensus 760 ~~~~llG~wl 769 (1464)
.++.++|.-.
T Consensus 108 ~a~~~~g~~~ 117 (235)
T TIGR03302 108 YAYYLRGLSN 117 (235)
T ss_pred HHHHHHHHHH
Confidence 5555555433
No 122
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=28.73 E-value=1.5e+02 Score=30.84 Aligned_cols=62 Identities=26% Similarity=0.157 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHH
Q 000483 682 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYI 748 (1464)
Q Consensus 682 ~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l 748 (1464)
..+..|+.+-..|.+..|...|..+..-. ..+.....+++-.|+++..+|+...|+..|+.+
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~ 111 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLARILLQQGQYDEALATLQQI 111 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 34667889999999999999998864321 111222345788899999999999999999654
No 123
>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer
Probab=28.52 E-value=74 Score=37.37 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=29.0
Q ss_pred hhhheeccCCCCCCeeEEecC---CCeEEEeecccc
Q 000483 1280 MVGYIVGLGDRHAMNILIDQA---TAEVVHIDLGVA 1312 (1464)
Q Consensus 1280 ~vgyilgLGDRH~~NILld~~---tG~v~hIDfg~~ 1312 (1464)
-...++.=||=|+.|||++.. +|.+.-|||.++
T Consensus 176 ~~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya 211 (302)
T cd05156 176 GSPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYA 211 (302)
T ss_pred CCCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCC
Confidence 467899999999999999965 589999999875
No 124
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=28.08 E-value=50 Score=33.18 Aligned_cols=25 Identities=40% Similarity=0.372 Sum_probs=22.6
Q ss_pred CCCCCCeeEEecCCCeEEEeeccccc
Q 000483 1288 GDRHAMNILIDQATAEVVHIDLGVAF 1313 (1464)
Q Consensus 1288 GDRH~~NILld~~tG~v~hIDfg~~f 1313 (1464)
||=+|+|||++. +|.+.=+|||.+.
T Consensus 113 ~Dl~~~Nil~~~-~~~~~l~Df~~~~ 137 (155)
T cd05120 113 GDLHPGNILVDD-GKILGIIDWEYAG 137 (155)
T ss_pred cCCCcceEEEEC-CcEEEEEeccccc
Confidence 899999999997 8999999998754
No 125
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=27.69 E-value=1.4e+02 Score=26.65 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=36.4
Q ss_pred HHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhchhhHHHHhh
Q 000483 413 VTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYC 492 (1464)
Q Consensus 413 ~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~~~ 492 (1464)
..|-+.++|++|+.+++..+..+ |+ +.......-.|+..+|.++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-----------------p~-------------~~~~~~~~a~~~~~~g~~~~A~~~l 52 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-----------------PD-------------DPELWLQRARCLFQLGRYEEALEDL 52 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-----------------cc-------------cchhhHHHHHHHHHhccHHHHHHHH
Confidence 45788999999999999999975 33 1223456777899999876654333
No 126
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=27.49 E-value=2.7e+02 Score=33.86 Aligned_cols=86 Identities=9% Similarity=-0.047 Sum_probs=65.0
Q ss_pred HHHHHHHHHhchhhHHHHhhHhHHHHhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhccc-----c---
Q 000483 336 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH-----K--- 407 (1464)
Q Consensus 336 ~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPD~~yGi~~~~-----~--- 407 (1464)
..-|..|..-+-|..|+-+++..+... |. .....-.+-.+|..+++.+.+....... .
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~--------P~------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~ 71 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLD--------PN------NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAK 71 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH
Confidence 456899999999999999988766432 21 2445566778899999999888775421 1
Q ss_pred -hhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000483 408 -LSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1464)
Q Consensus 408 -l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1464)
.-....-|.+.|++++|+.+|+..+..+
T Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 72 AYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 2244578889999999999999999965
No 127
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=26.26 E-value=1.3e+02 Score=27.38 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=21.6
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhh
Q 000483 409 SSQIVTLEHEGNWSKALEYYELQVRS 434 (1464)
Q Consensus 409 ~~~i~~yE~eg~W~kAL~~Yd~~l~~ 434 (1464)
.....-|...|+|++|+.+|+..++.
T Consensus 9 ~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 9 NNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45567889999999999999999886
No 128
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=26.19 E-value=2e+02 Score=26.61 Aligned_cols=73 Identities=19% Similarity=0.205 Sum_probs=50.9
Q ss_pred chhhHHHHhhHhHHHHhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhcccc-----hh---hHHHHHHh
Q 000483 346 GSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSHK-----LS---SQIVTLEH 417 (1464)
Q Consensus 346 ~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPD~~yGi~~~~~-----l~---~~i~~yE~ 417 (1464)
|.|..|+.+.|..++.. |. .......-.|-.+|-+.++.+.++.+.+... .. ....-|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~--------~~----~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELD--------PT----NPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLK 70 (84)
T ss_dssp T-HHHHHHHHHHHHHHH--------CG----THHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHC--------CC----ChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 56889999999977653 10 0012334447899999999999999985321 11 23478999
Q ss_pred hCCHHHHHHHHHH
Q 000483 418 EGNWSKALEYYEL 430 (1464)
Q Consensus 418 eg~W~kAL~~Yd~ 430 (1464)
.|+|++|+..|+.
T Consensus 71 l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 71 LGKYEEAIKALEK 83 (84)
T ss_dssp TT-HHHHHHHHHH
T ss_pred hCCHHHHHHHHhc
Confidence 9999999999875
No 129
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=26.17 E-value=1.3e+03 Score=29.35 Aligned_cols=158 Identities=22% Similarity=0.254 Sum_probs=89.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHhhcCChHHHHHHhhhhhhhcccccccchhHHHHhhhh
Q 000483 729 AKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSEDQRTTDKKSIERQCQ 808 (1464)
Q Consensus 729 Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~~~llG~wlae~~~e~~~~I~~~Y~~~a~~~~~~~~~~~~~~~~~~~~ 808 (1464)
|++.=.++||+.|+..-|.-++ .++...-+..++||=--|-. +....++.|=. ||++.. .....|.+ .++
T Consensus 337 aNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmK--Nt~AAi~sYRr-Avdi~p---~DyRAWYG-LGQ 406 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMK--NTHAAIESYRR-AVDINP---RDYRAWYG-LGQ 406 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhc--ccHHHHHHHHH-HHhcCc---hhHHHHhh-hhH
Confidence 5666678999999987764443 34566777888887655543 44556677755 876642 12234432 344
Q ss_pred hhhhHH--HhHHHHHHhHHHHhhhHHHHHHHHHHHhhHHHHHHHHHHhhhcCcCccchhhHHHHHHHHHHhhhHHHHHHh
Q 000483 809 THFHLA--HYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQKQLAMDREEAQKL 886 (1464)
Q Consensus 809 ~~~~lA--~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~e~~~l 886 (1464)
+|..+. -|+=-- |+++..++-.-.+-...+-+.| ++
T Consensus 407 aYeim~Mh~YaLyY------------fqkA~~~kPnDsRlw~aLG~CY-----------------------------~k- 444 (559)
T KOG1155|consen 407 AYEIMKMHFYALYY------------FQKALELKPNDSRLWVALGECY-----------------------------EK- 444 (559)
T ss_pred HHHHhcchHHHHHH------------HHHHHhcCCCchHHHHHHHHHH-----------------------------HH-
Confidence 443311 111111 1222222111111111111111 11
Q ss_pred HHhHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHhhhcCchHHHHHHHHHhhhcc
Q 000483 887 LDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEV 943 (1464)
Q Consensus 887 ~~~~~~fl~~Al~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~~~~v~~~~~~~l~~v 943 (1464)
..-+..||+||-+++..||.... ...|+-.|.=+.++.++....+.+++...
T Consensus 445 ----l~~~~eAiKCykrai~~~dte~~-~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 445 ----LNRLEEAIKCYKRAILLGDTEGS-ALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred ----hccHHHHHHHHHHHHhccccchH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 12245799999999999997443 57898888888888888777777777643
No 130
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=25.94 E-value=6.4e+02 Score=26.88 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=57.4
Q ss_pred HHHHHHHHHhchhhHHHHhhHhHHHHhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhccc---------
Q 000483 336 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH--------- 406 (1464)
Q Consensus 336 ~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPD~~yGi~~~~--------- 406 (1464)
..+|.....-|-|..|+-+.+...+.. +. .....-.+-.+|...+++|...-.....
T Consensus 69 ~~la~~~~~~~~~~~A~~~~~~al~~~--------~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 134 (234)
T TIGR02521 69 LALALYYQQLGELEKAEDSFRRALTLN--------PN------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQP 134 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--------CC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc
Confidence 457788888899999999988765331 11 1233444666677777776655543210
Q ss_pred --chhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000483 407 --KLSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1464)
Q Consensus 407 --~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1464)
.......-|...|++++|..+|+..++..
T Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 135 ARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 12234567889999999999999998864
No 131
>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain
Probab=25.79 E-value=51 Score=36.14 Aligned_cols=32 Identities=22% Similarity=0.143 Sum_probs=26.1
Q ss_pred hhheeccCCCCCCeeEEecC-CCeEEEeecccc
Q 000483 1281 VGYIVGLGDRHAMNILIDQA-TAEVVHIDLGVA 1312 (1464)
Q Consensus 1281 vgyilgLGDRH~~NILld~~-tG~v~hIDfg~~ 1312 (1464)
.-..+-=||=||+||+++.. +|.+.=|||+.+
T Consensus 172 ~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~ 204 (223)
T cd05154 172 SRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELA 204 (223)
T ss_pred CCcEEEECCCCcccEEEcCCCCcEEEEEecccc
Confidence 56778889999999999975 455678999864
No 132
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=25.78 E-value=87 Score=26.72 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHhhhcCcchhhchHHHHHHHH
Q 000483 87 SEELLIAVLKILKKYLMDDSVQIVDMTSQTLRGI 120 (1464)
Q Consensus 87 ~~~~~~~il~~l~~~l~~~~~~~~~~a~~~L~~i 120 (1464)
....+..++..|...|.|++..|+..|..||-+|
T Consensus 22 ~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 22 LQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4567888999999999999999999999998764
No 133
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=25.36 E-value=3.8e+02 Score=25.76 Aligned_cols=70 Identities=14% Similarity=0.064 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCC
Q 000483 681 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESN 755 (1464)
Q Consensus 681 ~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~ 755 (1464)
..+...+.+..+.|+++.|...+..+..... .....+ .+.+..+.++...|+...|+..++.++...+.+
T Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 40 NAHYWLGEAYYAQGKYADAAKAFLAVVKKYP--KSPKAP---DALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHCC--CCCccc---HHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 3445568899999999999999888754421 111111 234667888999999999999999888776543
No 134
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=24.56 E-value=1.3e+03 Score=27.71 Aligned_cols=63 Identities=14% Similarity=-0.012 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 000483 682 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 752 (1464)
Q Consensus 682 ~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~ 752 (1464)
.+...+...-+.|++..|...+.++.... +....+....+.++..+|+...|+..++.+++..
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEG--------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCC--------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 44555777788899999998887764331 1122334667889999999999999998877643
No 135
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=24.55 E-value=1.4e+03 Score=28.17 Aligned_cols=60 Identities=13% Similarity=-0.048 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHH
Q 000483 681 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKY 747 (1464)
Q Consensus 681 ~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~ 747 (1464)
..+...+.++-+.|+++.|...+-.++.+..+ |..+. ....+.++|..|+...|.++-++
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~-----p~~~~--~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQ-----LDAND--LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC-----CCHHH--HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45567789999999999999988743333211 11122 24679999999999999887654
No 136
>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes. ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo
Probab=24.22 E-value=1.3e+02 Score=33.83 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=27.5
Q ss_pred hhheeccCCCCCCeeEEecCCCeEEEeecccc
Q 000483 1281 VGYIVGLGDRHAMNILIDQATAEVVHIDLGVA 1312 (1464)
Q Consensus 1281 vgyilgLGDRH~~NILld~~tG~v~hIDfg~~ 1312 (1464)
...++.=||=|+.|||++..+|.+.=|||-++
T Consensus 168 ~~~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a 199 (235)
T cd05157 168 SPIVFCHNDLLSGNIIYNEEKNSVKFIDYEYA 199 (235)
T ss_pred CCEEEEcCCCCcCcEEEeCCCCCEEEEEcccC
Confidence 45678889999999999975688999999865
No 137
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=24.18 E-value=5.2e+02 Score=29.68 Aligned_cols=82 Identities=12% Similarity=-0.002 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhH
Q 000483 681 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPD 760 (1464)
Q Consensus 681 ~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~ 760 (1464)
..+-.-|..+-+.|++..|...+.++...-. .+ +.-..+.+..|......|+...|+...+.+++..+.++..+.
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP--~s---~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYP--FG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 3345567778889999999999888765422 11 111123578899999999999999999999999998888888
Q ss_pred HHHHHHH
Q 000483 761 VYRLVGK 767 (1464)
Q Consensus 761 ~~~llG~ 767 (1464)
++.++|.
T Consensus 108 a~Y~~g~ 114 (243)
T PRK10866 108 VLYMRGL 114 (243)
T ss_pred HHHHHHH
Confidence 8888873
No 138
>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process
Probab=24.12 E-value=60 Score=36.90 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.7
Q ss_pred CCCCCCeeEEecCCCeEEEeeccc
Q 000483 1288 GDRHAMNILIDQATAEVVHIDLGV 1311 (1464)
Q Consensus 1288 GDRH~~NILld~~tG~v~hIDfg~ 1311 (1464)
||=||+|+++. .|++.-|||+.
T Consensus 159 GD~hpgNFlv~--~~~i~iID~~~ 180 (229)
T PF06176_consen 159 GDPHPGNFLVS--NNGIRIIDTQG 180 (229)
T ss_pred CCCCcCcEEEE--CCcEEEEECcc
Confidence 99999999999 47799999974
No 139
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=24.10 E-value=46 Score=38.45 Aligned_cols=59 Identities=27% Similarity=0.317 Sum_probs=40.7
Q ss_pred CCCCCCeeEEecCCCeEEEeecccccc------cccC-CCCCCCCCcccccccc--------ccccccccc---chhH
Q 000483 1288 GDRHAMNILIDQATAEVVHIDLGVAFE------QGLM-LKTPERVPFRLTRDII--------DGMGVTGVE---GVFR 1347 (1464)
Q Consensus 1288 GDRH~~NILld~~tG~v~hIDfg~~f~------~g~~-l~~pE~VPFRLT~niv--------~~mG~~g~e---G~F~ 1347 (1464)
-|--|+|||+|+ +|.|=--|||.|=. +..- -=.|=..|=|++|+=- =-+|++-+| |.|.
T Consensus 192 RDvKPSNILldr-~G~vKLCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fP 268 (361)
T KOG1006|consen 192 RDVKPSNILLDR-HGDVKLCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFP 268 (361)
T ss_pred ccCChhheEEec-CCCEeeecccchHhHHHHHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCC
Confidence 577899999997 99999999998821 1110 1236667778888743 236666655 7664
No 140
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.28 E-value=4.8e+02 Score=30.41 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=58.6
Q ss_pred HHHHHHH-HHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhH
Q 000483 682 HLLESAS-TLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPD 760 (1464)
Q Consensus 682 ~wl~~a~-laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~ 760 (1464)
.+...|- +..+.|++..|..++..+... .+.+...+ .+.+-.+++++.+|+...|+...+.++++++.+....+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~---~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQP---NANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 3444444 335678999998887766433 22211111 24577899999999999999999999999888777888
Q ss_pred HHHHHHHHH
Q 000483 761 VYRLVGKWL 769 (1464)
Q Consensus 761 ~~~llG~wl 769 (1464)
++..+|.-.
T Consensus 219 Al~klg~~~ 227 (263)
T PRK10803 219 AMFKVGVIM 227 (263)
T ss_pred HHHHHHHHH
Confidence 887777544
No 141
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=23.25 E-value=1.3e+02 Score=25.23 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhHHHHH
Q 000483 725 RLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRL 764 (1464)
Q Consensus 725 ~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~~~~~a~~~~l 764 (1464)
+++.|+.+-..|+.+.|..+|++++.+. ...+..++..+
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~-~~~q~~eA~~L 40 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEG-DEAQRQEARAL 40 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcC-CHHHHHHHHHH
Confidence 5778999999999999999999998543 23344444433
No 142
>PRK05685 fliS flagellar protein FliS; Validated
Probab=22.64 E-value=4.6e+02 Score=27.25 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhh-------hHHHHHHHHHH
Q 000483 548 LHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEE-------STEYIYSAIVK 595 (1464)
Q Consensus 548 L~~~L~al~~~d~~~f~~~i~~aR~~l~~~Ls~~s~E-------S~~~~y~~lvr 595 (1464)
+..+-.|+.+||++.+...+.+|+.-+.+-.+++-.| ....+|.++.+
T Consensus 39 l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~LY~y~~~ 93 (132)
T PRK05685 39 LAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSALYDYMIR 93 (132)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHH
Confidence 3456678889999999999999988664433433332 23445655554
No 143
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=22.39 E-value=6.3e+02 Score=29.46 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhc---cCC
Q 000483 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY---ESN 755 (1464)
Q Consensus 679 ~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~---~~~ 755 (1464)
......+-|..-|.+|++..|-.+..+.-.+.... ..+..++..++.|-..+.+++...|+..++..+.-+ ...
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~---~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~ 110 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL---GDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRF 110 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT---T-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcH
Confidence 34444555677777888877777665543322110 112233334666777778889999999887554322 222
Q ss_pred CchhHHHHHHHHHHHHhhcCChHHHHHHhhhhhhhcc
Q 000483 756 EEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSFS 792 (1464)
Q Consensus 756 ~~~a~~~~llG~wlae~~~e~~~~I~~~Y~~~a~~~~ 792 (1464)
...+.++..+|+.+.+. ..+++..++.|.+ |.++-
T Consensus 111 ~~aA~~~~~lA~~ye~~-~~d~e~Ai~~Y~~-A~~~y 145 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQ-LGDYEKAIEYYQK-AAELY 145 (282)
T ss_dssp HHHHHHHHHHHHHHCCT-T--HHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHH-cCCHHHHHHHHHH-HHHHH
Confidence 34577888888866553 2467788888877 65443
No 144
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=22.18 E-value=1.3e+02 Score=22.06 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhccC
Q 000483 725 RLEEAKLLRAQGQHEMAINLAKYISENYES 754 (1464)
Q Consensus 725 ~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~~ 754 (1464)
.+..|.+.-..|+...|+..++.++.+++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 356678888899999999999999987753
No 145
>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members. The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista
Probab=22.13 E-value=67 Score=36.31 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=23.8
Q ss_pred hhheeccCCCCCCeeEEecCCCeE-EEeecccc
Q 000483 1281 VGYIVGLGDRHAMNILIDQATAEV-VHIDLGVA 1312 (1464)
Q Consensus 1281 vgyilgLGDRH~~NILld~~tG~v-~hIDfg~~ 1312 (1464)
..+.|-=||=|++|||++. |++ --|||+.+
T Consensus 162 ~~~~l~HGD~~~~Nvlv~~--~~i~giIDw~~a 192 (235)
T cd05155 162 GPPVWFHGDLAPGNLLVQD--GRLSAVIDFGCL 192 (235)
T ss_pred CCceEEeCCCCCCcEEEEC--CCEEEEEeCccc
Confidence 3556777999999999984 565 48999964
No 146
>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2.7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....
Probab=22.06 E-value=94 Score=34.45 Aligned_cols=32 Identities=31% Similarity=0.324 Sum_probs=22.9
Q ss_pred hhheeccCCCCCCeeEEecCCCeEEEeecccc
Q 000483 1281 VGYIVGLGDRHAMNILIDQATAEVVHIDLGVA 1312 (1464)
Q Consensus 1281 vgyilgLGDRH~~NILld~~tG~v~hIDfg~~ 1312 (1464)
...++.=+|-+|.|||++..+|++.-|||-++
T Consensus 141 ~~~v~cHnDl~~~Nil~~~~~~~~~lIDfEya 172 (211)
T PF01633_consen 141 SPLVFCHNDLNPGNILINNKDGEVKLIDFEYA 172 (211)
T ss_dssp GGEEEE-S--SGGGEEETSSSSCEEE--GTT-
T ss_pred CCceEeeccCccccEEeccCCCeEEEecHHHH
Confidence 34788999999999999777999999999876
No 147
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=21.63 E-value=1.7e+03 Score=28.77 Aligned_cols=167 Identities=18% Similarity=0.105 Sum_probs=0.0
Q ss_pred hhchhhhhhHHHHH-HHHHHhcccchHHHHHHHH-HHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHH
Q 000483 653 QLHMNLLEPFMAFR-RVLLQILSCKDFTMQHLLE-SASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAK 730 (1464)
Q Consensus 653 ~~~~~~~EpiL~~R-~~vl~il~~~e~~~~~wl~-~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak 730 (1464)
+.+|+.-+++...= +.+-...|+....+...++ +|.+.|..+++..|....-++.++....-+...|..+....-.|.
T Consensus 212 ~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ 291 (508)
T KOG1840|consen 212 QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV 291 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q ss_pred HHHHcCChHHHHHHHH---HHHhhccCCCchhHHHHHHHHHHHHhhcCChHHHHHHhhhhhhhcccccccch----hHHH
Q 000483 731 LLRAQGQHEMAINLAK---YISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSEDQRTTD----KKSI 803 (1464)
Q Consensus 731 ~lW~~Ge~~~Ai~~Lk---~l~~~~~~~~~~a~~~~llG~wlae~~~e~~~~I~~~Y~~~a~~~~~~~~~~~----~~~~ 803 (1464)
++..+|....|-...+ .|..+ .......++-..+.+--+--.+.+-.+--.+|++.+..+.....+.. .+..
T Consensus 292 ly~~~GKf~EA~~~~e~Al~I~~~-~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~ 370 (508)
T KOG1840|consen 292 LYYKQGKFAEAEEYCERALEIYEK-LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIY 370 (508)
T ss_pred HHhccCChHHHHHHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHH
Q ss_pred HhhhhhhhhHHHhHHHH
Q 000483 804 ERQCQTHFHLAHYADAL 820 (1464)
Q Consensus 804 ~~~~~~~~~lA~f~D~~ 820 (1464)
.+.+..++..++|.+..
T Consensus 371 ~nl~~l~~~~gk~~ea~ 387 (508)
T KOG1840|consen 371 ANLAELYLKMGKYKEAE 387 (508)
T ss_pred HHHHHHHHHhcchhHHH
No 148
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=21.63 E-value=86 Score=35.37 Aligned_cols=91 Identities=18% Similarity=0.213 Sum_probs=58.9
Q ss_pred hhcccchhhheeccCCCCCCeeEE-ecCCCeEEEeecccccccccCCCCCCCCCcccccccccccccccccchhHHHHHH
Q 000483 1274 SVAASSMVGYIVGLGDRHAMNILI-DQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEK 1352 (1464)
Q Consensus 1274 S~A~~S~vgyilgLGDRH~~NILl-d~~tG~v~hIDfg~~f~~g~~l~~pE~VPFRLT~niv~~mG~~g~eG~F~~~~~~ 1352 (1464)
.+.=++|+=|++|=+|||-.|+.= .-+.|-++|+|=|-.|+.-..=+.+=..| .--=-.||++-..
T Consensus 91 dliDm~IFDFLigN~DRhhye~f~~fgn~~~l~~LDNgrgFG~~~~de~sIlaP-------------L~QcC~iRrST~~ 157 (221)
T PF06702_consen 91 DLIDMAIFDFLIGNMDRHHYETFNKFGNEGFLLHLDNGRGFGRPSHDELSILAP-------------LYQCCRIRRSTWE 157 (221)
T ss_pred HHHHHHHHHHHhcCCcchhhhhhhccCCCceEEEEeCCcccCCCCCCccchhcc-------------HHHhhhccccHHH
Confidence 344577888999999999888653 22346699999998885322111111122 1111367777777
Q ss_pred HHHHHhcChHHHHHHHHH-HccCCCc
Q 000483 1353 TLSVMRTNKEALLTIVEV-FIHDPLY 1377 (1464)
Q Consensus 1353 t~~~Lr~~~~~l~~iL~~-f~~DpL~ 1377 (1464)
.++.|.+....|..+|.- +..||+.
T Consensus 158 rL~~l~~~~~~Ls~~m~~s~~~D~l~ 183 (221)
T PF06702_consen 158 RLQLLSKGGYRLSDLMRESLSRDPLA 183 (221)
T ss_pred HHHHhccCCCcHHHHHHHHhccCccC
Confidence 888888777788777764 5677664
No 149
>PF02202 Tachykinin: Tachykinin family; InterPro: IPR002040 This family includes peptides, which belong to the tachykinin family. Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. Tachykinins, like most other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Tachykinins are from ten to twelve residues long.; GO: 0007217 tachykinin receptor signaling pathway, 0007268 synaptic transmission; PDB: 1MYU_A 1N6T_A 2GFR_A.
Probab=21.13 E-value=31 Score=20.45 Aligned_cols=9 Identities=44% Similarity=1.184 Sum_probs=7.0
Q ss_pred CCchhhhhh
Q 000483 394 NEPDSLYGI 402 (1464)
Q Consensus 394 dEPD~~yGi 402 (1464)
.+||.|||+
T Consensus 2 p~pd~F~GL 10 (11)
T PF02202_consen 2 PKPDQFYGL 10 (11)
T ss_dssp -CHHHHCCC
T ss_pred CCcccceec
Confidence 379999996
No 150
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=21.06 E-value=5.8e+02 Score=26.53 Aligned_cols=67 Identities=10% Similarity=-0.091 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 000483 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 753 (1464)
Q Consensus 679 ~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~Lk~l~~~~~ 753 (1464)
....|...+.++-+.|++..|.....++..+.. .+..+.+..+.++-..|+...|+..++..+...+
T Consensus 57 ~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p--------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 57 SWRAHIALAGTWMMLKEYTTAINFYGHALMLDA--------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 456677778888888899988888877655422 1223346678888888999999988877665443
No 151
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=21.04 E-value=3.7e+02 Score=27.51 Aligned_cols=62 Identities=29% Similarity=0.156 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHHHHHHHHHHHcCChHHHHHHH
Q 000483 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLA 745 (1464)
Q Consensus 679 ~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~Ak~lW~~Ge~~~Ai~~L 745 (1464)
-...+++.++..|.-|+...|.+.|.+... ..+.... ....+.-.|-.|+..|++++|+..+
T Consensus 37 ~~~a~i~lastlr~LG~~deA~~~L~~~~~--~~p~~~~---~~~l~~f~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 37 RRRALIQLASTLRNLGRYDEALALLEEALE--EFPDDEL---NAALRVFLALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCccc---cHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 456788999999999999999999887532 2211111 1123445688999999999999876
No 152
>cd00180 PKc Catalytic domain of Protein Kinases. Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which
Probab=20.88 E-value=5.3e+02 Score=26.89 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=25.1
Q ss_pred eccCCCCCCeeEEecCCCeEEEeecccccc
Q 000483 1285 VGLGDRHAMNILIDQATAEVVHIDLGVAFE 1314 (1464)
Q Consensus 1285 lgLGDRH~~NILld~~tG~v~hIDfg~~f~ 1314 (1464)
+--||-+|+||+++..+|.+.=+|||.+-.
T Consensus 113 ~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~ 142 (215)
T cd00180 113 IIHRDLKPENILLDSDNGKVKLADFGLSKL 142 (215)
T ss_pred eeccCCCHhhEEEeCCCCcEEEecCCceEE
Confidence 344899999999997689999999997753
No 153
>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity. Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....
Probab=20.75 E-value=90 Score=34.97 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=23.4
Q ss_pred cCCCCCCeeEEecCCCeEEEeeccccc
Q 000483 1287 LGDRHAMNILIDQATAEVVHIDLGVAF 1313 (1464)
Q Consensus 1287 LGDRH~~NILld~~tG~v~hIDfg~~f 1313 (1464)
=+|-.|+||+++ ..|++.-+|||.+.
T Consensus 121 H~dikp~NIl~~-~~~~~~l~Dfg~~~ 146 (260)
T PF00069_consen 121 HRDIKPENILLD-ENGEVKLIDFGSSV 146 (260)
T ss_dssp ESSBSGGGEEES-TTSEEEESSGTTTE
T ss_pred cccccccccccc-cccccccccccccc
Confidence 378899999999 69999999999885
No 154
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=20.69 E-value=4.5e+02 Score=36.29 Aligned_cols=52 Identities=10% Similarity=0.064 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhccCCCccHHHHHHHHHHhhhcCchH--HHHHHHHHhhhccc
Q 000483 893 FLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQ--NVIKNMVDTIDEVQ 944 (1464)
Q Consensus 893 fl~~Al~~Yl~sL~~~~~~~~~~~~RllsLWl~~~~~~--~v~~~~~~~l~~vP 944 (1464)
-|.+.|.+|+..=..+....-...-++|.||+...... .+...|.+.+.++|
T Consensus 1475 ~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~ 1528 (1758)
T KOG0994|consen 1475 NLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLP 1528 (1758)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcc
Confidence 45678999988766665555566779999999987542 34455555555554
No 155
>PLN02421 phosphotransferase, alcohol group as acceptor/kinase
Probab=20.05 E-value=1.2e+02 Score=36.33 Aligned_cols=34 Identities=12% Similarity=0.194 Sum_probs=29.5
Q ss_pred hhheeccCCCCCCeeEEecCCCeEEEeecccccc
Q 000483 1281 VGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFE 1314 (1464)
Q Consensus 1281 vgyilgLGDRH~~NILld~~tG~v~hIDfg~~f~ 1314 (1464)
...++.=+|-+++|||++...|.+.-|||.++--
T Consensus 180 ~~~v~CHnDl~~~NiL~~~~~~~l~lID~EYag~ 213 (330)
T PLN02421 180 APVVFAHNDLLSGNLMLNEDEGKLYFIDFEYGSY 213 (330)
T ss_pred CCeEEEECCCCcccEEEeCCCCcEEEEcccccCC
Confidence 4568899999999999998778999999998743
Done!