Query 000483
Match_columns 1464
No_of_seqs 341 out of 1491
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 16:39:45 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000483.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_262-266//hhsearch_pdb/000483hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x6h_A GH13170P, VPS34, phosph 1.0 1 1 544.8 32.4 395 972-1463 277-693 (696)
2 1e7u_A Phosphatidylinositol 3- 1.0 1 1 533.3 29.0 414 895-1381 445-903 (961)
3 2y3a_A Phosphatidylinositol-4, 1.0 1 1 528.0 33.7 415 895-1381 592-1039(1092)
4 2wxf_A Phosphatidylinositol-4, 1.0 1 1 525.0 33.2 415 895-1381 439-887 (940)
5 3ls8_A Phosphatidylinositol 3- 1.0 1 1 517.1 29.0 376 973-1449 208-603 (614)
6 3hhm_A Phosphatidylinositol-4, 1.0 1 1 509.2 27.8 451 895-1449 585-1071(1091)
7 1w1n_A Phosphatidylinositol 3- 1.0 1 1 90.3 1.5 33 1432-1464 1-33 (33)
8 2xpi_A Anaphase-promoting comp 1.0 1 1 27.5 24.0 65 679-751 304-368 (597)
9 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 27.3 25.8 64 680-751 203-266 (388)
10 4gyw_A UDP-N-acetylglucosamine 1.0 1 1 24.6 13.2 57 684-748 115-171 (723)
No 1
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=1.00 E-value=1 Score=544.77 Aligned_cols=395 Identities=21% Similarity=0.346 Sum_probs=289.9
Q ss_pred HHHHHHHHHHHHHHCC---CHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Q ss_conf 9999999999998478---015556753124652000000132002113599999999999986------7999999999
Q 000483 972 QFALVSLVKKMAIDHP---YHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSS------YHGAIIRQMK 1042 (1464)
Q Consensus 972 ~~~L~~Ll~ri~~~hP---~h~l~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~il~~l~~------~~~~~~~~~~ 1042 (1464)
...|..+|++.+...| ++.+|.|.+....+.... . +...+.. .-....+.++..+.. .....+..-.
T Consensus 277 ~s~La~FLl~rA~~n~~i~h~l~W~L~~e~~~~~~~~-~--~~~~~~~-~~~~il~~~l~~l~~g~~~~~~~~~~l~~Q~ 352 (696)
T 2x6h_A 277 PANLCTFLIQRACTNATLANYFYWYLSIEVEEVESVR-K--QDERAHD-MYAMVLKMFLKVLENGNFNLRGIFYNLRKQR 352 (696)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHHHHHHHCC------C--CHHHHHH-HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCC-C--CCCHHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 7779999999985286668999987571234763112-1--1306899-9999999999986334753189999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCC-CHHHHHHHC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEECCCC
Q ss_conf 9999999998877101335433433-303442100--245556655545789887666788662111356-389823788
Q 000483 1043 QMVDVYIKLAELETRREQDTNKRIQ-LPREIRCLR--QLELVPVVTATVPIDCTCQYNEGSFPYFKGLAE-SVMVMNGIN 1118 (1464)
Q Consensus 1043 ~l~~~~~~la~~~~~~~~~~~~~~~-l~~~l~~l~--~l~~~p~~t~~lp~~~~~~y~~~~~~~i~~f~~-~~~v~~s~~ 1118 (1464)
.+++.+.+++...........++.. +...+.... ..++..+....+|.+|. ++|.+|.+ .+.|++|++
T Consensus 353 ~~~~~L~~i~~~ik~~~~~~~~k~e~L~~~L~~~~~~~~~l~~~~~~~lP~~p~--------v~I~~~~~~~~~V~~S~~ 424 (696)
T 2x6h_A 353 RFIDELVKLVKLVAKEPGNRNKKTEKFQKLLAEQDMFKVNFTNFEPIPFPLDPE--------IYITKIVPMRTSLFKSAL 424 (696)
T ss_dssp HHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHSTTSSSSCTTSCCCEECSSCTT--------SEEEEECGGGCEECSSSS
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCC--------EEEEEEECCEEEECCCCC
T ss_conf 999999999998711686378899999998532111000102378756799987--------699999437179833046
Q ss_pred CCEEEEEECCC-CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCEEEECCCCCCEEEECCCCCC
Q ss_conf 74289998189-96155877328631147799999999999999618122367720002128871899734687289875
Q 000483 1119 APKVVECFGSD-GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVP 1197 (1464)
Q Consensus 1119 ~Pk~i~~~gsd-G~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~R~L~i~tY~ViPLs~~~GlIE~v~~t~s 1197 (1464)
+||+|+|+|+| |+.|.||+|+| ||+|||+|++|+|++||.+|++++ |+|.+++|+|||+++++||||||+ +.|
T Consensus 425 ~P~~l~~~gsD~G~~y~~i~K~g-DDLRQD~rv~Ql~~lmn~il~~~~----~~L~i~~Y~Vipls~~~GLIE~V~-s~t 498 (696)
T 2x6h_A 425 MPAKLTFVTSIAHHEYAAIFKHG-DDLRQDQLILQMITLMDKLLRREN----LDLKLTPYKVLATSSKHGFLQYVD-SCT 498 (696)
T ss_dssp CCEEEEEEETTTTCEEEEEEECS-SCTHHHHHHHHHHHHHHHHHHHTT----CCCCCCCCCEEESSTTCEEEECCC-CEE
T ss_pred CCEEEEEEECCCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHHHHCC----CCCEEECCEEEECCCCCCEEEECC-CCC
T ss_conf 97489999637887045787437-654216899999999999998479----983775307996367787234579-755
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH----HHHHHHHH
Q ss_conf 58875210138998877688850167877520153768999999996232358999999818945899----99999897
Q 000483 1198 LGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWF----EKRLAYTR 1273 (1464)
Q Consensus 1198 l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w~----~~R~~ft~ 1273 (1464)
+++|+... + .+++||.+.||++..|| .+|.+|++
T Consensus 499 l~~i~~~~----------~--------------------------------~l~~~f~~~~p~~~~~~~~~~~ar~nF~~ 536 (696)
T 2x6h_A 499 VAEVLARE----------G--------------------------------NIHNFFRKHHPCDNGPYGISAEVMDTYIK 536 (696)
T ss_dssp HHHHHHHS----------S--------------------------------SHHHHHHHHSBCTTSSSSBCHHHHHHHHH
T ss_pred HHHHHHHC----------C--------------------------------HHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 99998706----------7--------------------------------09999998788962012427999999999
Q ss_pred HHCCCCHHHHEECCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH--HHHHHH
Q ss_conf 310000244104037889970678348991999542200011567999988971014010112443343101--288899
Q 000483 1274 SVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGV--FRRCCE 1351 (1464)
Q Consensus 1274 S~A~~SivgyilgLgDRH~~NILid~~tG~v~hIDfg~~f~~g~~l~~pE~VPFRLT~ni~~~mG~~g~eG~--F~~~~~ 1351 (1464)
|+|+|||+||||||||||++|||||. ||+++|||||++|+++ +.||+|||||||||+++||+.|+||. |+.+|+
T Consensus 537 SlA~~Svv~YILGlGDRH~~NILid~-tG~v~HIDFG~~f~~~---p~pe~VPFRLT~~mv~~mG~~g~eg~~~Fr~~c~ 612 (696)
T 2x6h_A 537 SCAGYCVITYLLGVGDRHLDNLLLTT-NGKLFHIDFGYILGRD---PKPMPPPMKLSKEMVEAMGGISSEHHHEFRKQCY 612 (696)
T ss_dssp HHHHHHHHHHHHTCCCCCTTTEEECT-TSCEEECCCCSCTTCC---SSSCCCSSCCCHHHHHHTTSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEC-CCCEEEEEEHHHHCCC---CCCCCCCEECCHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 99999999998348889976568807-8998988534553668---8776798631799999838977610899999999
Q ss_pred HHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999710959999999997018875222481679854310232212799999210135244899999998520699999
Q 000483 1352 KTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEGG 1431 (1464)
Q Consensus 1352 ~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~i~~v~~kL~g~~~~ 1431 (1464)
.++++||++++.|++++++|++|++.+|...+. .++..+++|+....+.
T Consensus 613 ~~~~~LR~~~~~il~ll~lml~~~lp~~~~~~~-------------------------------~~i~~l~~rf~l~lse 661 (696)
T 2x6h_A 613 TAYLHLRRHANVMLNLFSLMVDATVPDIALEPD-------------------------------KAVKKVEENLQLGLTD 661 (696)
T ss_dssp HHHHHHHHTHHHHHHHHHHTTTCCCTTTTSSGG-------------------------------GHHHHHHHHHTTTSCH
T ss_pred HHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCHH-------------------------------HHHHHHHHHHCCCCCH
T ss_conf 999999867899999999997589975466878-------------------------------9999999983799999
Q ss_pred CCCCHHHHHHHHHHHCCCCH--HHHHHCCCCCCC
Q ss_conf 87699999999999901902--256207343257
Q 000483 1432 EMRSVHGQVQQLIQDAIDPE--RFCLMFPGWGAW 1463 (1464)
Q Consensus 1432 ~~lsv~~~V~~LI~~Atd~~--nLa~m~~gW~pw 1463 (1464)
.....+|..||++|.+.- ++--++..|..|
T Consensus 662 --eea~~~~~~lI~~S~~s~~t~~~d~~h~~aq~ 693 (696)
T 2x6h_A 662 --EEAVQHLQSLLDVSITAVMPALVEQIHRFTQY 693 (696)
T ss_dssp --HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --99999999999999853448899999999999
No 2
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=1.00 E-value=1 Score=533.27 Aligned_cols=414 Identities=21% Similarity=0.288 Sum_probs=310.0
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHH---HH--HC------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 9999999988135897407899999978---64--03------------7628999999984100364420331222210
Q 000483 895 GLALEGYKRCLVIGDKYDVRVVFRLVSL---WF--SL------------SSRQNVIKNMVDTIDEVQSYKFIPLVYQIAS 957 (1464)
Q Consensus 895 ~~Ai~~Yl~sL~~~~~~~~~~~~RllsL---Wl--~~------------~~~~~v~~~i~~~l~~vPs~kfl~~~pQL~s 957 (1464)
..|+..+++|+.+.+......+..+|.- |= .. ..++.|.....+.+...|...++..+|||+.
T Consensus 445 p~aL~k~l~sv~w~~~~~v~e~~~lL~~~~~W~~~~~~~~~ALeLL~~~f~d~~VR~yAV~~L~~~~d~~l~~YL~QLVQ 524 (961)
T 1e7u_A 445 PKAYPKLFSSVKWGQQEIVAKTYQLLAKREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLEDDDVLHYLLQLVQ 524 (961)
T ss_dssp GGGHHHHHTSSCTTCHHHHHHHHHHHHCCHHHHHSCCCHHHHHHTTSTTCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 47887875456789989999999987336777788989999998568768997899999999982999999999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC---HHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHH---
Q ss_conf 3457854456241899999999999984780---1555675312465200000013200211359999999999998---
Q 000483 958 RMGSTKDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELS--- 1031 (1464)
Q Consensus 958 RL~~~~~~~~~~~f~~~L~~Ll~ri~~~hP~---h~l~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~il~~l~--- 1031 (1464)
.|.+..- ....|..+|++.|...+. +.+|.|.+..... .....|. ..+++.+.
T Consensus 525 aLkyE~~------~~s~L~~fLl~ra~~n~~i~h~l~W~l~~e~~~~---~~~~~r~------------~~ll~~~l~~~ 583 (961)
T 1e7u_A 525 AVKFEPY------HDSALARFLLKRGLRNKRIGHFLFWFLRSEIAQS---RHYQQRF------------AVILEAYLRGC 583 (961)
T ss_dssp HGGGCSS------SSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC---TTTHHHH------------HHHHHHHHTTS
T ss_pred HHHHCCC------CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC---HHHHHHH------------HHHHHHHHHHC
T ss_conf 9853334------6776999999998618377899998855231578---6689999------------99999998644
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--------HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -6799999999999999999988771013354334333--------0344210024555665554578988766678866
Q 000483 1032 -SYHGAIIRQMKQMVDVYIKLAELETRREQDTNKRIQL--------PREIRCLRQLELVPVVTATVPIDCTCQYNEGSFP 1102 (1464)
Q Consensus 1032 -~~~~~~~~~~~~l~~~~~~la~~~~~~~~~~~~~~~l--------~~~l~~l~~l~~~p~~t~~lp~~~~~~y~~~~~~ 1102 (1464)
......+..-..+++.+.+++....... ..+.++ ...+..+...+ +| .+..+|.+|. .
T Consensus 584 ~~~~~~~~~~q~~~~~~L~~i~~~ik~~~---~~~~~~~~~~~~~l~~~L~~l~~i~-vP-~~~~lP~dP~--------v 650 (961)
T 1e7u_A 584 GTAMLHDFTQQVQVIDMLQKVTIDIKSLS---AEKYDVSSQVISQLKQKLENLQNLN-LP-QSFRVPYDPG--------L 650 (961)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSGGGG---CCSSCCCHHHHHHHHHHHHHHHHTT-SC-SCEEETTEEE--------E
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCHHHHHHHHHHHHHHHHCCC-CC-CCCCCCCCCC--------E
T ss_conf 29899999999999999999999987640---0002311667999999998642075-89-8765799995--------4
Q ss_pred CCCCC-CCEEEEECCCCCCEEEEEECCCCC-----EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECC
Q ss_conf 21113-563898237887428999818996-----155877328631147799999999999999618122367720002
Q 000483 1103 YFKGL-AESVMVMNGINAPKVVECFGSDGH-----KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRT 1176 (1464)
Q Consensus 1103 ~i~~f-~~~~~v~~s~~~Pk~i~~~gsdG~-----~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~R~L~i~t 1176 (1464)
.|.+| .+.+.|++|+++|++|+++|+||+ .|.||+|+| ||+|||+|++|+|++||.+|+++ +|+|.+++
T Consensus 651 ~i~~i~~~~~~V~~S~~~P~~l~~~g~Dg~~~~~~~~~~i~K~g-DDLRQD~~v~Ql~~lmn~il~~~----~~~L~i~~ 725 (961)
T 1e7u_A 651 KAGALVIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHG-DDLRQDMLILQILRIMESIWETE----SLDLCLLP 725 (961)
T ss_dssp EEEEECGGGCEECSSTTCCEEEEEEESCTTCSCCCCEEEEEEES-SCCHHHHHHHHHHHHHHHHHHHT----TCCCCCCC
T ss_pred EEEEEECCEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECC-CCCCCCHHHHHHHHHHHHHHHHC----CCCEEEEE
T ss_conf 89876334379850257956999972687756677523898458-54434364999999999998635----88828883
Q ss_pred CEEEECCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12887189973468728987558875210138998877688850167877520153768999999996232358999999
Q 000483 1177 YKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLE 1256 (1464)
Q Consensus 1177 Y~ViPLs~~~GlIE~v~~t~sl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~ 1256 (1464)
|+|+|+++++||||||+|++|+++|+.... |....+ -.+++++||.+
T Consensus 726 Y~Vipls~~~GlIE~V~ns~tl~~I~~~~~---g~~~~f------------------------------~~~~L~~w~~~ 772 (961)
T 1e7u_A 726 YGCISTGDKIGMIEIVKDATTIAKIQQSTV---GNTGAF------------------------------KDEVLSHWLKE 772 (961)
T ss_dssp CCEEEEETTEEEEECCSSEEEHHHHHHHHS---CSSSCC------------------------------CSSHHHHHHHH
T ss_pred EEEEECCCCCCEEEECCCCCCHHHHHHHCC---CCCCCC------------------------------CHHHHHHHHHH
T ss_conf 049987788775776599746999998536---752224------------------------------41689999998
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCHHHHEECCCCCCCCEEEEECCCCEEEEEECCCCCCCCCC-CC-CCCCCCCCCCCCCC
Q ss_conf 81894589999999897310000244104037889970678348991999542200011567-99-99889710140101
Q 000483 1257 RFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LK-TPERVPFRLTRDII 1334 (1464)
Q Consensus 1257 ~f~~~~~w~~~R~~ft~S~A~~SivgyilgLgDRH~~NILid~~tG~v~hIDfg~~f~~g~~-l~-~pE~VPFRLT~ni~ 1334 (1464)
.+++++.|+.+|.+|++|+|+|||+||||||||||++|||||+ ||+++|||||++|++++. ++ .||+|||||||||+
T Consensus 773 ~~~~~~~~~~ar~~F~~S~A~ySvv~YILGigDRH~~NILid~-tG~v~HIDFG~~f~~~~~~l~~~pE~vPFRLT~~mv 851 (961)
T 1e7u_A 773 KCPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMISE-TGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFL 851 (961)
T ss_dssp HCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEET-TCCEEECCCCCC----------CCCCCSSCCCHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 5998689999999999988999899897005578876568835-777898853343246865567788889842479999
Q ss_pred CCCCCCCCC-----CHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 124433431-----01288899999997109599999999970188752224
Q 000483 1335 DGMGVTGVE-----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1381 (1464)
Q Consensus 1335 ~~mG~~g~e-----G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~ 1381 (1464)
++||+.|++ |.|+.+|+.++++||++++.|++++++|++||+.+|..
T Consensus 852 ~~mG~~g~e~s~~fg~F~~~c~~~~~~LR~~~~~l~~ll~lm~~~~lp~~~~ 903 (961)
T 1e7u_A 852 FVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLTS 903 (961)
T ss_dssp HHTTCCSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHSCSSCCC
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9856567766452789999999999999975899999999984699976586
No 3
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=1.00 E-value=1 Score=528.02 Aligned_cols=415 Identities=20% Similarity=0.266 Sum_probs=308.0
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 999999998813589740789999997864037------------62899999998410036442033122221034578
Q 000483 895 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 962 (1464)
Q Consensus 895 ~~Ai~~Yl~sL~~~~~~~~~~~~RllsLWl~~~------------~~~~v~~~i~~~l~~vPs~kfl~~~pQL~sRL~~~ 962 (1464)
..|+..+++|+.+.+......+..++.-|=..+ .++.|.....+.+...|...++..+|||+..|.+.
T Consensus 592 p~aL~k~l~sv~w~~~~e~~e~~~lL~~W~~i~p~~ALeLL~~~f~d~~VR~yAV~~L~~~~d~~l~~yLpQLVQaLkyE 671 (1092)
T 2y3a_A 592 PQSLPKLLLSIKWNKLEDVAQLQALLQIWPKLPPREALELLDFNYPDQYVREYAVGCLRQMSDEELSQYLLQLVQVLKYE 671 (1092)
T ss_dssp GGGHHHHHHHSCTTCHHHHHHHHHHHHTSCCCCHHHHGGGGSTTCCCTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 07889998416889988999999997058999999999866865899899999999997399999999999999998606
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCC---CHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHH----HHHH
Q ss_conf 5445624189999999999998478---01555675312465200000013200211359999999999998----6799
Q 000483 963 KDALGLHNFQFALVSLVKKMAIDHP---YHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELS----SYHG 1035 (1464)
Q Consensus 963 ~~~~~~~~f~~~L~~Ll~ri~~~hP---~h~l~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~il~~l~----~~~~ 1035 (1464)
.- ....|..+|++.+...| ++.+|.|.+...... .+.+. ..+++.+. ....
T Consensus 672 ~~------~~s~L~~fLl~ra~~n~~i~h~l~W~L~~e~~~~~----~~~r~------------~~lle~~~~~~~~~~~ 729 (1092)
T 2y3a_A 672 PF------LDCALSRFLLERALDNRRIGQFLFWHLRSEVHTPA----VSVQF------------GVILEAYCRGSVGHMK 729 (1092)
T ss_dssp SS------SSCHHHHHHHHHHTSCSSHHHHHHHHHHHHHTSHH----HHHHH------------HHHHHHHHHHTTTTHH
T ss_pred CC------CCCHHHHHHHHHHHHCHHHHHHHHHHEEECCCCCH----HHHHH------------HHHHHHHHHHCHHHHH
T ss_conf 55------65679999999986485778999977122206915----89999------------9999999842678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCC-CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EE
Q ss_conf 999999999999999988771013--3543343-3303442100245556655545789887666788662111356-38
Q 000483 1036 AIIRQMKQMVDVYIKLAELETRRE--QDTNKRI-QLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAE-SV 1111 (1464)
Q Consensus 1036 ~~~~~~~~l~~~~~~la~~~~~~~--~~~~~~~-~l~~~l~~l~~l~~~p~~t~~lp~~~~~~y~~~~~~~i~~f~~-~~ 1111 (1464)
.+.+| ..+++.+.+++....... .+..++. .+.+.+........+ +...+|.+| .+.|.+|.+ .+
T Consensus 730 ~l~~Q-~~~~~~L~~is~~ik~~~~~~~r~k~~e~L~~~l~~~~~~~~~--~~~~lP~~P--------~v~I~~~~~~~~ 798 (1092)
T 2y3a_A 730 VLSKQ-VEALNKLKTLNSLIKLNAVKLSRAKGKEAMHTCLKQSAYREAL--SDLQSPLNP--------CVILSELYVEKC 798 (1092)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHSTTHHHHT--SSSCCSSCS--------SBCCCCCCGGGC
T ss_pred HHHHH-HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHCC--CCCCCCCCC--------CEEEEEEECCCE
T ss_conf 99999-9999999999999852465443788999999986042112137--898789997--------547888844723
Q ss_pred EEECCCCCCEEEEEECCC--CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCEEEECCCCCCEE
Q ss_conf 982378874289998189--961558773286311477999999999999996181223677200021288718997346
Q 000483 1112 MVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGIL 1189 (1464)
Q Consensus 1112 ~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~R~L~i~tY~ViPLs~~~GlI 1189 (1464)
.|++|+++|++|+++|+| |+.|.||+|+| ||+|||+|++|+|++||.+|++++ |+|.+++|.|+|+++++|||
T Consensus 799 ~V~~S~~~P~rL~~~gsD~~G~~y~~L~K~g-DDLRQD~rv~Ql~~lmn~ll~~~~----~~L~i~~Y~Vipls~~~GLI 873 (1092)
T 2y3a_A 799 KYMDSKMKPLWLVYSSRAFGEDSVGVIFKNG-DDLRQDMLTLQMLRLMDLLWKEAG----LDLRMLPYGCLATGDRSGLI 873 (1092)
T ss_dssp EECSSTTCCEEEEEECTTTSSSEEEEEECCS-SCCHHHHHHHHHHHHHHHHHHHHS----CCCCCCCCCEECCSSSCCEE
T ss_pred EEECCCCCCEEEEEEECCCCCCEEEEEEECC-CCCCHHHHHHHHHHHHHHHHHHCC----CCEEEECCEEEEECCCCCEE
T ss_conf 8803112856999993377886145798448-321124899999999999998489----88188633489845988857
Q ss_pred EECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 872898755887521013899887768885016787752015376899999999623-2358999999818945899999
Q 000483 1190 EWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENF-RPVLHYFFLERFLQPAYWFEKR 1268 (1464)
Q Consensus 1190 E~v~~t~sl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~-~pvl~~~f~~~f~~~~~w~~~R 1268 (1464)
|||+|+.|+++|+... ++... . ..+ .+++++||.+.+ .++.|+.+|
T Consensus 874 E~V~ns~TL~~I~~~~---~~~~~---~--------------------------~~f~~~~L~~~~~~~~-~~~~~~~ar 920 (1092)
T 2y3a_A 874 EVVSTSETIADIQLNS---SNVAA---T--------------------------AAFNKDALLNWLKEYN-SGDDLDRAI 920 (1092)
T ss_dssp ECCTTCCBHHHHHSSS---CTTTT---T--------------------------SCSSTTHHHHHHHHHC-CTHHHHHHH
T ss_pred EECCCCCCHHHHHHHH---CCCHH---H--------------------------HCCCCHHHHHHHHHHC-CHHHHHHHH
T ss_conf 5579974599999863---56202---2--------------------------1048467999999769-888899999
Q ss_pred HHHHHHHCCCCHHHHEECCCCCCCCEEEEECCCCEEEEEECCCCCCCCC-CCC-CCCCCCCCCCCCCCCCCCCC--CCC-
Q ss_conf 9989731000024410403788997067834899199954220001156-799-99889710140101124433--431-
Q 000483 1269 LAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL-MLK-TPERVPFRLTRDIIDGMGVT--GVE- 1343 (1464)
Q Consensus 1269 ~~ft~S~A~~SivgyilgLgDRH~~NILid~~tG~v~hIDfg~~f~~g~-~l~-~pE~VPFRLT~ni~~~mG~~--g~e- 1343 (1464)
.+|++|+|+|||+||||||||||++|||||+ ||+++|||||++|+.++ .+. .||+|||||||||+++||+. |.+
T Consensus 921 ~nF~~SlA~ySvv~YILGlGDRH~~NILid~-tG~v~HIDFG~~f~~~~~~l~~~pE~VPFRLT~~mv~~mg~g~~~~s~ 999 (1092)
T 2y3a_A 921 EEFTLSCAGYCVASYVLGIGDRHSDNIMVKK-TGQLFHIDFGHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTE 999 (1092)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCTTTEEECT-TSCEEECCCSCCSSCCCCGGGCCCCCCCCCCCHHHHHHHHTTCSSCSS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC-CCCEEEEEEHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
T ss_conf 9999999999999998117789976378935-787899842334403776688888889804779999997068777775
Q ss_pred --CHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf --01288899999997109599999999970188752224
Q 000483 1344 --GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1381 (1464)
Q Consensus 1344 --G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~ 1381 (1464)
|.|+.+|+.++++||++++.|+++|++|++||+.+|..
T Consensus 1000 ~fg~Fr~~c~~a~~~LR~~~~~Il~ll~lml~~~Lp~~~~ 1039 (1092)
T 2y3a_A 1000 KFGRFRQCCEDAYLILRRHGNLFITLFALMLTAGLPELTS 1039 (1092)
T ss_dssp STTHHHHHHHHHHHHHHHTHHHHHHHHHHTSTTCCSSCSS
T ss_pred CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 4225999999999999868899999999994799953353
No 4
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=1.00 E-value=1 Score=525.02 Aligned_cols=415 Identities=18% Similarity=0.240 Sum_probs=305.4
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 999999998813589740789999997864037------------62899999998410036442033122221034578
Q 000483 895 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 962 (1464)
Q Consensus 895 ~~Ai~~Yl~sL~~~~~~~~~~~~RllsLWl~~~------------~~~~v~~~i~~~l~~vPs~kfl~~~pQL~sRL~~~ 962 (1464)
..|+..+++|+.+.+......+..++.-|=..+ .++.|.....+.+...|...++..+|||+..|.+.
T Consensus 439 p~aL~~~l~sv~w~~~~~~~~~~~ll~~W~~~~~~~ALeLL~~~f~d~~Vr~yAv~~L~~~~d~~l~~yL~QLVQaLkyE 518 (940)
T 2wxf_A 439 PEALARLLLVTKWNKHEDVAQMLYLLCSWPELPVLSALELLDFSFPDCYVGSFAIKSLRKLTDDELFQYLLQLVQVLKYE 518 (940)
T ss_dssp GGGHHHHHTTSCTTCHHHHHHHHHHHHTCCCCCHHHHHHHTSTTCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHGGGC
T ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
T ss_conf 16888988014789989999999997057899999999865875899899999999987299899999999999998605
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHH---CCCHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHH----HHHH
Q ss_conf 54456241899999999999984---7801555675312465200000013200211359999999999998----6799
Q 000483 963 KDALGLHNFQFALVSLVKKMAID---HPYHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELS----SYHG 1035 (1464)
Q Consensus 963 ~~~~~~~~f~~~L~~Ll~ri~~~---hP~h~l~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~il~~l~----~~~~ 1035 (1464)
.- ....|..+|++.+.. ..|+.+|.|.+...... .+.|. ..+++.+. ....
T Consensus 519 ~~------~~s~L~~fLl~ra~~n~~i~h~l~W~l~~e~~~~~----~~~r~------------~~ile~~~~~~~~~~~ 576 (940)
T 2wxf_A 519 SY------LDCELTKFLLGRALANRKIGHFLFWHLRSEMHVPS----VALRF------------GLIMEAYCRGSTHHMK 576 (940)
T ss_dssp SS------SSCHHHHHHHHHHHHCHHHHHHHHHHHHTTTTCHH----HHHHH------------HHHHHHHHHHCHHHHH
T ss_pred CC------CCCHHHHHHHHHHHHCHHHHHHHHHHHEECCCCCH----HHHHH------------HHHHHHHHHHCHHHHH
T ss_conf 44------65589999999987575778999988310316906----99999------------9999999842678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCC-CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEE
Q ss_conf 99999999999999998877101335--43343-330344210024555665554578988766678866211135-638
Q 000483 1036 AIIRQMKQMVDVYIKLAELETRREQD--TNKRI-QLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLA-ESV 1111 (1464)
Q Consensus 1036 ~~~~~~~~l~~~~~~la~~~~~~~~~--~~~~~-~l~~~l~~l~~l~~~p~~t~~lp~~~~~~y~~~~~~~i~~f~-~~~ 1111 (1464)
.+.+| ..+++.+.+++......... ..++. .+.+.+......... +...+|.+| ...|.+|. +.+
T Consensus 577 ~l~~q-~~~~~~L~~i~~~ik~~~~~~~r~k~~~~L~~~l~~~~~~~~~--~~~~lP~~P--------~~~I~~~~~~~~ 645 (940)
T 2wxf_A 577 VLMKQ-GEALSKLKALNDFVKVSSQKTTKPQTKEMMHMCMRQETYMEAL--SHLQSPLDP--------STLLEEVCVEQC 645 (940)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHTSHHHHHHH--SSEEETTEE--------EEEECEECGGGC
T ss_pred HHHHH-HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHCC--CCCCCCCCC--------CEEEEEECCCCE
T ss_conf 99999-9999999999999852465331789999999987141123306--898789998--------625777606714
Q ss_pred EEECCCCCCEEEEEECCC---CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCEEEECCCCCCE
Q ss_conf 982378874289998189---96155877328631147799999999999999618122367720002128871899734
Q 000483 1112 MVMNGINAPKVVECFGSD---GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGI 1188 (1464)
Q Consensus 1112 ~v~~s~~~Pk~i~~~gsd---G~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~R~L~i~tY~ViPLs~~~Gl 1188 (1464)
.|++|+++|++|+++|+| |+.|.||+|+| ||+|||+|++|+|++||.+|++++ |+|.+++|.|+|+++++||
T Consensus 646 ~V~~S~~~P~~l~~~gsD~~~G~~~~~i~K~g-DDLRqD~rv~Ql~~lmn~il~~~~----~~L~i~~Y~Vipls~~~Gl 720 (940)
T 2wxf_A 646 TFMDSKMKPLWIMYSSEEAGSAGNVGIIFKNG-DDLRQDMLTLQMIQLMDVLWKQEG----LDLRMTPYGCLPTGDRTGL 720 (940)
T ss_dssp EECSSTTCCEEEEEECTTTGGGGCEEEEEEES-SCCHHHHHHHHHHHHHHHHHHHTT----CCCCCCCCCEEEEETTEEE
T ss_pred EECCCCCCCEEEEEEECCCCCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHHHHCC----CCEEEEEEEEEEECCCCCE
T ss_conf 88331128749999834767786323798337-543312899999999999998389----9718995149982377886
Q ss_pred EEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCHHHHHH
Q ss_conf 6872898755887521013899887768885016787752015376899999999623-235899999981894589999
Q 000483 1189 LEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENF-RPVLHYFFLERFLQPAYWFEK 1267 (1464)
Q Consensus 1189 IE~v~~t~sl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~-~pvl~~~f~~~f~~~~~w~~~ 1267 (1464)
||||+|+.|+++|+... ++.... ..+ .+++++||.+.++ ++.|+.+
T Consensus 721 IE~V~ns~tl~~I~~~~---~~~~~~-----------------------------~~f~~~~l~~~~~~~~~-~~~~~~a 767 (940)
T 2wxf_A 721 IEVVLHSDTIANIQLNK---SNMAAT-----------------------------AAFNKDALLNWLKSKNP-GEALDRA 767 (940)
T ss_dssp EECCSSEEEHHHHHTCC---SSSTTC-----------------------------CSSGGGHHHHHHHHHSC-TTHHHHH
T ss_pred EEECCCCCCHHHHHHHH---CCCHHH-----------------------------HCCCCHHHHHHHHHHCC-HHHHHHH
T ss_conf 86779973699999861---663022-----------------------------02585569999997598-8889999
Q ss_pred HHHHHHHHCCCCHHHHEECCCCCCCCEEEEECCCCEEEEEECCCCCCCCC-CCCC-CCCCCCCCCCCCCCCCCCC--CCC
Q ss_conf 99989731000024410403788997067834899199954220001156-7999-9889710140101124433--431
Q 000483 1268 RLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL-MLKT-PERVPFRLTRDIIDGMGVT--GVE 1343 (1464)
Q Consensus 1268 R~~ft~S~A~~SivgyilgLgDRH~~NILid~~tG~v~hIDfg~~f~~g~-~l~~-pE~VPFRLT~ni~~~mG~~--g~e 1343 (1464)
|.+|++|+|+|||+||||||||||++|||||+ ||+++|||||++|++++ .+.+ ||+|||||||||+++||+. |.+
T Consensus 768 ~~~F~~S~A~~Svv~YILGlgDRH~~NILid~-tG~v~HIDFG~~f~~~~~~l~~~pE~VPFRLT~~mv~~mg~g~~~~s 846 (940)
T 2wxf_A 768 IEEFTLSCAGYCVATYVLGIGDRHSDNIMIRE-SGQLFHIDFGHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNS 846 (940)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCGGGEEEET-TSCEEECCCCCCTTCC---------CCCCCCCHHHHHHHTTTCSCCH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC-CCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
T ss_conf 99999988999999998006789844379955-88789884133330456656888888981477999999707877777
Q ss_pred ---CHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf ---01288899999997109599999999970188752224
Q 000483 1344 ---GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1381 (1464)
Q Consensus 1344 ---G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~ 1381 (1464)
|.|+.+|+.++++||++++.|+++|++|++||+.+|..
T Consensus 847 ~~~g~Fr~~c~~~~~~LR~~~~~ll~ll~lml~~~lp~~~~ 887 (940)
T 2wxf_A 847 EKFERFRGYCERAYTILRRHGLLFLHLFALMRAAGLPELSC 887 (940)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHGGGCCTTSCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 43456999999999999867899999999995799954576
No 5
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=1.00 E-value=1 Score=517.10 Aligned_cols=376 Identities=22% Similarity=0.353 Sum_probs=269.8
Q ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHCCCCCCCHH---HHCCCCCHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Q ss_conf 9999999999984780---15556753124652000---0001320021135999999999999867------9999999
Q 000483 973 FALVSLVKKMAIDHPY---HTIFQLLALANGDRIKD---KQRSRNSFVVDMDKKLAAENLLEELSSY------HGAIIRQ 1040 (1464)
Q Consensus 973 ~~L~~Ll~ri~~~hP~---h~l~~l~a~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~il~~l~~~------~~~~~~~ 1040 (1464)
..|..+|++.|...|. ..+|.|.+.+....... ..+.++.. ..+.++..+... ...++..
T Consensus 208 s~La~FLi~RAl~n~~ig~~lyW~L~~E~~~~~~~~~~~~~~~~Y~~--------vl~~~l~~l~~g~~~~~~~r~~L~~ 279 (614)
T 3ls8_A 208 QDLCTFLISRACKNSTLANYLYWYVIVECEDQDTQQRDPKTHEMYLN--------VMRRFSQALLKGDKSVRVMRSLLAA 279 (614)
T ss_dssp CCHHHHHHHHHHTCHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH--------HHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHH--------HHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 83899999987348888877776602323575322112278899999--------9999999987268146899999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCC-CHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEECCCC
Q ss_conf 999999999998877101335433433-303442100245556655545789887666788662111356-389823788
Q 000483 1041 MKQMVDVYIKLAELETRREQDTNKRIQ-LPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAE-SVMVMNGIN 1118 (1464)
Q Consensus 1041 ~~~l~~~~~~la~~~~~~~~~~~~~~~-l~~~l~~l~~l~~~p~~t~~lp~~~~~~y~~~~~~~i~~f~~-~~~v~~s~~ 1118 (1464)
-..+++.+.+++....+...+..++.. +...+............+..+|.+|. ++|.+|.+ .+.|++|++
T Consensus 280 Q~~~~~~L~~l~~~v~~~~~~~~kk~e~L~~~L~~~~~~~l~~~~~~~lPl~P~--------v~I~~i~p~~~~V~~Sk~ 351 (614)
T 3ls8_A 280 QQTFVDRLVHLMKAVQRESGNRKKKNERLQALLGDNEKMNLSDVELIPLPLEPQ--------VKIRGIIPETATLFKSAL 351 (614)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHCHHHHCCSSCSSEEETTEEE--------EEEEEECGGGCEECSSTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCC--------EEEEEEECCEEEEEECCC
T ss_conf 999999999999999850243688999999997150010124578878999986--------699999658068851146
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCEEEECCCCCCEEEECCCCCCH
Q ss_conf 74289998189961558773286311477999999999999996181223677200021288718997346872898755
Q 000483 1119 APKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPL 1198 (1464)
Q Consensus 1119 ~Pk~i~~~gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~R~L~i~tY~ViPLs~~~GlIE~v~~t~sl 1198 (1464)
+||+|+|+|+||+.|.||+|+| ||+|||++++|+|++||.+|+++. ++|.+++|+|+|+++++||||||++ .++
T Consensus 352 ~P~~l~~~gsDG~~y~~i~K~g-DDLRQD~~~~Ql~~l~n~il~~~~----ldL~i~~Y~Vipls~~~GlIE~V~~-~tl 425 (614)
T 3ls8_A 352 MPAQLFFKTEDGGKYPVIFKHG-DDLRQDQLILQIISLMDKLLRKEN----LDLKLTPYKVLATSTKHGFMQFIQS-VPV 425 (614)
T ss_dssp CCEEEEEEETTSCEEEEEEEES-SCCHHHHHHHHHHHHHHHHHHHTT----CCCCCCCCCEEESSSSEEEEECCCC-EEH
T ss_pred CEEEEEEECCCCCEEEEEEECC-CCCHHHHHHHHHHHHHHHHHHHCC----CCCEEECCEEEEECCCCCEEEEECC-CCH
T ss_conf 8279999926998877887438-851398999999999999999669----9844541079994598765887178-658
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHH
Q ss_conf 887521013899887768885016787752015376899999999623235899999981894589----9999998973
Q 000483 1199 GDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYW----FEKRLAYTRS 1274 (1464)
Q Consensus 1199 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w----~~~R~~ft~S 1274 (1464)
.+++.. ...+.+||.+.++++..| +.+|.+|++|
T Consensus 426 ~~il~~------------------------------------------~~~l~~~f~~~~~~~~~~~~~~~~a~~nF~~S 463 (614)
T 3ls8_A 426 AEVLDT------------------------------------------EGSIQNFFRKYAPSENGPNGISAEVMDTYVKS 463 (614)
T ss_dssp HHHHHH------------------------------------------TSSHHHHHHHHSBCTTSGGGBCHHHHHHHHHH
T ss_pred HHHHHC------------------------------------------CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 999870------------------------------------------58699999985888666544559999999998
Q ss_pred HCCCCHHHHEECCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHH
Q ss_conf 1000024410403788997067834899199954220001156799998897101401011244334310--12888999
Q 000483 1275 VAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEG--VFRRCCEK 1352 (1464)
Q Consensus 1275 ~A~~SivgyilgLgDRH~~NILid~~tG~v~hIDfg~~f~~g~~l~~pE~VPFRLT~ni~~~mG~~g~eG--~F~~~~~~ 1352 (1464)
+|+|||+||||||||||++||||| .||+++|||||++|+++ +.||+||||||+||+++||++|+|| .|+.+|+.
T Consensus 464 ~A~ySvv~YILGigDRH~~NILld-~tG~v~HIDFG~~f~~~---p~pe~vPFRLT~~mv~~mG~~~~e~f~~Fr~~c~~ 539 (614)
T 3ls8_A 464 CAGYCVITYILGVGDRHLDNLLLT-KTGKLFHIDFGYILGRD---PKPLPPPMKLNKEMVEGMGGTQSEQYQEFRKQCYT 539 (614)
T ss_dssp HHHHHHHHHHHTCCCCCTTSEEEC-TTSCEEECCCSSCTTCC---SSSSCCSSCCCHHHHHHTTCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHEEEECCCCCCCCEEEC-CCCCEEEEEHHHHHCCC---CCCCCCCEECCHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 777767510323468887666673-78988664117765358---87788874348999998399887218899999999
Q ss_pred HHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99997109599999999970188752224816798543102322127999992101352448999999985206999998
Q 000483 1353 TLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEGGE 1432 (1464)
Q Consensus 1353 t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~i~~v~~kL~g~~~~~ 1432 (1464)
++.+||++++.|++++++|+.+++.+|...+.+ ++..+++++.--.+
T Consensus 540 ~~~~LR~~~~~il~l~~lM~~s~lp~~~~~~~~-------------------------------~i~~l~~rf~l~ls-- 586 (614)
T 3ls8_A 540 AFLHLRRYSNLILNLFSLMVDANIPDIALEPDK-------------------------------TVKKVQDKFRLDLS-- 586 (614)
T ss_dssp HHHHHHHTHHHHHHHHHTTTTSCCHHHHTSGGG-------------------------------HHHHHHHHTTTTSC--
T ss_pred HHHHHHHCHHHHHHHHHHHHCCCCCCCCCCHHH-------------------------------HHHHHHHHCCCCCC--
T ss_conf 999998777899999999705999744557589-------------------------------99999997389999--
Q ss_pred CCCHHHHHHHHHHHCCC
Q ss_conf 76999999999999019
Q 000483 1433 MRSVHGQVQQLIQDAID 1449 (1464)
Q Consensus 1433 ~lsv~~~V~~LI~~Atd 1449 (1464)
..-...++..||+++.+
T Consensus 587 e~ea~~~~~~lI~~S~~ 603 (614)
T 3ls8_A 587 DEEAVHYMQSLIDESVH 603 (614)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999885
No 6
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=1.00 E-value=1 Score=509.18 Aligned_cols=451 Identities=18% Similarity=0.262 Sum_probs=324.6
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH-HCCCCCCHHHHHHHHHCCCCC
Q ss_conf 999999998813589740789999997864037------------6289999999841-003644203312222103457
Q 000483 895 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTI-DEVQSYKFIPLVYQIASRMGS 961 (1464)
Q Consensus 895 ~~Ai~~Yl~sL~~~~~~~~~~~~RllsLWl~~~------------~~~~v~~~i~~~l-~~vPs~kfl~~~pQL~sRL~~ 961 (1464)
..|+..+++|+.+++......+..+|.-|=..+ .++.|.....+.+ ...|....+..+|||+.-|.+
T Consensus 585 p~aL~k~L~sV~W~~~~e~~e~~~LL~~W~~i~~~~ALeLL~~~f~d~~VR~yAV~~L~~~~~ddeLl~YLlQLVQALKy 664 (1091)
T 3hhm_A 585 PEILPKLLLSVKWNSRDEVAQMYCLVKDWPPIKPEQAMELLDCNYPDPMVRGFAVRCLEKYLTDDKLSQYLIQLVQVLKY 664 (1091)
T ss_dssp GGGHHHHHTTSCTTCHHHHHHHHHHHHTCCCCCHHHHHHTTSTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 16888986327889989999999998557889988999857666899899999999987548889999999999999701
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCC---HHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 854456241899999999999984780---15556753124652000000132002113599999999999986799999
Q 000483 962 TKDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSYHGAII 1038 (1464)
Q Consensus 962 ~~~~~~~~~f~~~L~~Ll~ri~~~hP~---h~l~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~il~~l~~~~~~~~ 1038 (1464)
..- ....|..+|++.|...|. +.+|.|.+....... ..|...++ +.++.........+.
T Consensus 665 E~~------~ds~La~FLl~RAl~n~~igh~lfW~L~~E~~~~~~----~~r~~~lL--------e~~~~~~~~~~~~l~ 726 (1091)
T 3hhm_A 665 EQY------LDNLLVRFLLKKALTNQRIGHFFFWHLKSEMHNKTV----SQRFGLLL--------ESYCRACGMYLKHLN 726 (1091)
T ss_dssp CSS------SSCHHHHHHHHHHTTCHHHHHHHHHHHHTTTTCTTT----HHHHHHHH--------HHHHHHSCTHHHHHH
T ss_pred CCC------CCCHHHHHHHHHHHHCHHHHHHHHHHEEECCCCCHH----HHHHHHHH--------HHHHHHCHHHHHHHH
T ss_conf 433------554899999999860978888887770110258307----89999999--------999851899999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCC---CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEE
Q ss_conf 99999999999998877101335433---433303442100245556655545789887666788662111356-38982
Q 000483 1039 RQMKQMVDVYIKLAELETRREQDTNK---RIQLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAE-SVMVM 1114 (1464)
Q Consensus 1039 ~~~~~l~~~~~~la~~~~~~~~~~~~---~~~l~~~l~~l~~l~~~p~~t~~lp~~~~~~y~~~~~~~i~~f~~-~~~v~ 1114 (1464)
+|. .+++.+.+++........+..+ .-.+...+......+.. ..+.+|.+|. ..|.+|.+ .+.|+
T Consensus 727 rQ~-~~~~~L~~is~~ik~~~~~~~~~~k~~~L~~~L~~~~~~~~~--~~~~lPl~P~--------~~I~~i~~~~~~V~ 795 (1091)
T 3hhm_A 727 RQV-EAMEKLINLTDILKQEKKDETQKVQMKFLVEQMRRPDFMDAL--QGFLSPLNPA--------HQLGNLRLEECRIM 795 (1091)
T ss_dssp HHH-HHHHHHHHHHHHTTSTTCCSCHHHHHHHHHHHHHSHHHHHHS--SSEEETTEEE--------EEECSBCGGGCEEC
T ss_pred HHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHCC--CCCCCCCCCC--------EEEEEEEECEEEEE
T ss_conf 999-999999999999863144433688999999998351101024--6788999950--------08989861547986
Q ss_pred CCCCCCEEEEEECCC--CCEE----EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCEEEECCCCCCE
Q ss_conf 378874289998189--9615----5877328631147799999999999999618122367720002128871899734
Q 000483 1115 NGINAPKVVECFGSD--GHKY----RQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGI 1188 (1464)
Q Consensus 1115 ~s~~~Pk~i~~~gsd--G~~y----~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~R~L~i~tY~ViPLs~~~Gl 1188 (1464)
+|+++|++|+|+|+| |+.| .+++|.| ||+|||++++|+|++||.+|++++ ++|.+++|.|+|+++++||
T Consensus 796 ~S~~~P~~L~f~g~D~~G~~y~~~~~~i~K~g-DDLRQD~~v~Qli~lmn~il~~~~----~dL~l~~Y~Vip~s~~~Gl 870 (1091)
T 3hhm_A 796 SSAKRPLWLNWENPDIMSELLFQNNEIIFKNG-DDLRQDMLTLQIIRIMENIWQNQG----LDLRMLPYGCLSIGDCVGL 870 (1091)
T ss_dssp CSSSCCEEEEECCCSTTSTTTSCCEEEEEEES-SCCHHHHHHHHHHHHHHHHHHTTT----CCCCCCCCCEEEEETTEEE
T ss_pred ECCCCCEEEEEECCCCCCCCCCCCCEEEEECC-CCHHHHHHHHHHHHHHHHHHHHCC----CCCEEEEEEEEECCCCCCC
T ss_conf 21058179999547888761134432799748-633188999999999999998579----9806762269984698764
Q ss_pred EEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCHHHHHH
Q ss_conf 6872898755887521013899887768885016787752015376899999999623-235899999981894589999
Q 000483 1189 LEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENF-RPVLHYFFLERFLQPAYWFEK 1267 (1464)
Q Consensus 1189 IE~v~~t~sl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~-~pvl~~~f~~~f~~~~~w~~~ 1267 (1464)
||||+|++|+++|+.... .... ..+ .+++++||.+.| ++..|+.+
T Consensus 871 IE~V~ns~Tl~~I~~~~~----~~~~-----------------------------~~f~~~~L~~~f~~~~-~~~~~~~a 916 (1091)
T 3hhm_A 871 IEVVRNSHTIMQIQCKGG----LKGA-----------------------------LQFNSHTLHQWLKDKN-KGEIYDAA 916 (1091)
T ss_dssp EECCSSEEEHHHHHHSCT----TTCT-----------------------------TCCCTTHHHHHHHTTS-CTTSHHHH
T ss_pred EEECCCCHHHHHHHHHHC----CCCC-----------------------------CCCCCHHHHHHHHHCC-CHHHHHHH
T ss_conf 345387250999998618----6510-----------------------------0247467999998608-76899999
Q ss_pred HHHHHHHHCCCCHHHHEECCCCCCCCEEEEECCCCEEEEEECCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCC--CCCC
Q ss_conf 99989731000024410403788997067834899199954220001156--7999988971014010112443--3431
Q 000483 1268 RLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL--MLKTPERVPFRLTRDIIDGMGV--TGVE 1343 (1464)
Q Consensus 1268 R~~ft~S~A~~SivgyilgLgDRH~~NILid~~tG~v~hIDfg~~f~~g~--~l~~pE~VPFRLT~ni~~~mG~--~g~e 1343 (1464)
|.+|++|+|+|||+||||||||||++|||||+ ||+++|||||++|++++ ....||.||||||+||+++||+ .|+|
T Consensus 917 r~nF~~S~A~ysvv~YiLgigDRH~~NILid~-tG~v~HIDFG~~f~~~~~~~~~~~E~vPFrLT~~mv~vmg~G~~~~e 995 (1091)
T 3hhm_A 917 IDLFTRSCAGYCVATFILGIGDRHNSNIMVKD-DGQLFHIDFGHFLDHKKKKFGYKRERVPFVLTQDFLIVISKGAQECT 995 (1091)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCTTTEEEET-TSCEEECCCCCCSCC------------CCCCCHHHHHHSSCSSSCCS
T ss_pred HHHHHHHHHHHHHEEEEEEECCCCCCCEEEEC-CCCEEEEEEHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCCC
T ss_conf 99999976424243788760688876469907-99989870254540387667777678884327999999825777765
Q ss_pred -----CHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf -----012888999999971095999999999701887522248167985431023221279999921013524489999
Q 000483 1344 -----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERAL 1418 (1464)
Q Consensus 1344 -----G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~i 1418 (1464)
|.|+.+|+.++.+||++++.|++++++|+++++.+|...+ .+
T Consensus 996 ~s~~fg~Fr~~c~~a~~~LR~~~~~il~LlelM~~s~lp~~~~~~---------------------------------~i 1042 (1091)
T 3hhm_A 996 KTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQSFD---------------------------------DI 1042 (1091)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHGGGSCCTTCSSHH---------------------------------HH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH---------------------------------HH
T ss_conf 552077899999999999986567899999998069997657657---------------------------------99
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9998520699999876999999999999019
Q 000483 1419 IRVKQKLDGYEGGEMRSVHGQVQQLIQDAID 1449 (1464)
Q Consensus 1419 ~~v~~kL~g~~~~~~lsv~~~V~~LI~~Atd 1449 (1464)
..+++++.--.+ ..-...++..+|.+|..
T Consensus 1043 ~~lr~rf~l~ls--eeeA~~~f~~~i~~s~~ 1071 (1091)
T 3hhm_A 1043 AYIRKTLALDKT--EQEALEYFMKQMNDARH 1071 (1091)
T ss_dssp HHHHHHSCCSSC--HHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHCCCCC--HHHHHHHHHHHHHHHHH
T ss_conf 999997489989--99999999999999985
No 7
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=1.00 E-value=1 Score=90.25 Aligned_cols=33 Identities=36% Similarity=0.626 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCC
Q ss_conf 876999999999999019022562073432579
Q 000483 1432 EMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1464 (1464)
Q Consensus 1432 ~~lsv~~~V~~LI~~Atd~~nLa~m~~gW~pwl 1464 (1464)
+.+||++||++||++|||++|||+||+||+||+
T Consensus 1 ~~lsv~~QV~~LI~~At~~~NL~~my~GW~p~w 33 (33)
T 1w1n_A 1 NELDVPEQVDKLIQQATSIERLCQHYIGWCPFW 33 (33)
T ss_dssp CCSCSTHHHHHHHHHHHHHHHHHTTSCSCCTTC
T ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
T ss_conf 998889999999999659899998710003679
No 8
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=27.55 Aligned_cols=65 Identities=14% Similarity=-0.002 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8999999999998059936999999999631289999875233558899999999869958999999999963
Q 000483 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISEN 751 (1464)
Q Consensus 679 ~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~AklLW~~Ge~~~AI~~Lk~l~~~ 751 (1464)
....|...+....+.|++..|...+.++...... +..+....+..+...|+...|+..++.+...
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 368 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY--------NLDVYPLHLASLHESGEKNKLYLISNDLVDR 368 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC--------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 0999999999999846899999999999972955--------3799999999999827777999999999851
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=27.25 Aligned_cols=64 Identities=17% Similarity=0.075 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 999999999998059936999999999631289999875233558899999999869958999999999963
Q 000483 680 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISEN 751 (1464)
Q Consensus 680 ~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~AklLW~~Ge~~~AI~~Lk~l~~~ 751 (1464)
...|...+.+....|.+..|...+.++..+. |....+....+.++..+|+...|+..++..+..
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLS--------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 7999999999998578999999999998529--------687899999999999868899999999999864
No 10
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=1.00 E-value=1 Score=24.63 Aligned_cols=57 Identities=14% Similarity=-0.070 Sum_probs=25.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999998059936999999999631289999875233558899999999869958999999999
Q 000483 684 LESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYI 748 (1464)
Q Consensus 684 l~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~~~lE~AklLW~~Ge~~~AI~~Lk~l 748 (1464)
...+.+.++.|++..|...+.++..+.. .+..+....+.++...|+...|+..++..
T Consensus 115 ~~Lg~~~~~~g~~~eAi~~~~~Al~l~P--------~~~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 115 SNLASIHKDSGNIPEAIASYRTALKLKP--------DFPDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS--------CCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999986999999999999997399--------98577740556777401499999999999
Done!