Query 000484
Match_columns 1464
No_of_seqs 590 out of 2906
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 10:25:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 6E-228 1E-232 2103.1 101.7 1303 1-1406 71-1403(1463)
2 PTZ00014 myosin-A; Provisional 100.0 3E-192 6E-197 1806.2 70.4 706 1-711 101-818 (821)
3 cd01384 MYSc_type_XI Myosin mo 100.0 9E-185 2E-189 1720.5 64.9 669 1-669 6-674 (674)
4 KOG0164 Myosin class I heavy c 100.0 5E-181 1E-185 1553.2 59.4 721 2-739 14-755 (1001)
5 KOG0160 Myosin class V heavy c 100.0 6E-180 1E-184 1646.4 66.8 745 1-758 13-758 (862)
6 cd01380 MYSc_type_V Myosin mot 100.0 3E-180 7E-185 1690.3 62.8 660 1-665 5-691 (691)
7 cd01381 MYSc_type_VII Myosin m 100.0 7E-180 2E-184 1678.8 62.2 657 1-665 5-671 (671)
8 cd01377 MYSc_type_II Myosin mo 100.0 2E-179 4E-184 1684.2 63.9 660 1-665 10-693 (693)
9 cd01378 MYSc_type_I Myosin mot 100.0 2E-178 5E-183 1669.4 62.3 658 1-665 5-674 (674)
10 cd01383 MYSc_type_VIII Myosin 100.0 8E-178 2E-182 1658.4 61.5 650 1-665 13-677 (677)
11 cd01385 MYSc_type_IX Myosin mo 100.0 3E-177 6E-182 1660.8 64.8 657 1-665 12-688 (692)
12 cd01387 MYSc_type_XV Myosin mo 100.0 3E-177 7E-182 1656.5 62.7 656 1-665 6-677 (677)
13 cd01382 MYSc_type_VI Myosin mo 100.0 2E-176 4E-181 1658.6 64.0 657 1-664 9-715 (717)
14 cd01379 MYSc_type_III Myosin m 100.0 1E-174 3E-179 1623.9 63.1 635 1-665 5-653 (653)
15 KOG0162 Myosin class I heavy c 100.0 3E-174 6E-179 1495.5 52.8 688 1-699 23-725 (1106)
16 smart00242 MYSc Myosin. Large 100.0 1E-173 3E-178 1635.1 63.2 661 1-666 11-677 (677)
17 KOG0161 Myosin class II heavy 100.0 6E-172 1E-176 1680.6 77.8 905 1-982 87-1018(1930)
18 cd00124 MYSc Myosin motor doma 100.0 1E-171 3E-176 1622.8 63.1 658 1-665 5-679 (679)
19 KOG0163 Myosin class VI heavy 100.0 1E-168 2E-173 1448.9 75.0 730 2-747 63-842 (1259)
20 cd01386 MYSc_type_XVIII Myosin 100.0 7E-171 2E-175 1608.3 61.7 657 1-665 5-767 (767)
21 PF00063 Myosin_head: Myosin h 100.0 1E-163 2E-168 1573.4 54.0 650 1-654 4-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 3E-112 7E-117 1072.5 29.4 746 1-760 66-1008(1062)
23 KOG1892 Actin filament-binding 100.0 7.5E-31 1.6E-35 311.5 20.8 263 1092-1431 595-865 (1629)
24 PF01843 DIL: DIL domain; Int 99.9 1.6E-27 3.6E-32 233.5 6.1 105 1282-1389 1-105 (105)
25 KOG0161 Myosin class II heavy 99.5 3.6E-10 7.9E-15 153.0 44.9 626 287-985 324-1007(1930)
26 cd01363 Motor_domain Myosin an 98.7 3.3E-08 7.2E-13 107.8 7.0 90 66-164 8-98 (186)
27 COG5022 Myosin heavy chain [Cy 98.4 0.00013 2.9E-09 95.9 31.4 78 719-796 746-823 (1463)
28 KOG0160 Myosin class V heavy c 98.4 1.8E-06 3.8E-11 110.0 13.0 87 717-806 672-758 (862)
29 KOG0520 Uncharacterized conser 98.4 5.2E-07 1.1E-11 114.5 7.7 121 669-789 809-937 (975)
30 KOG0520 Uncharacterized conser 97.9 2.9E-05 6.4E-10 99.1 10.6 116 694-813 811-938 (975)
31 KOG1029 Endocytic adaptor prot 97.5 0.01 2.2E-07 73.1 23.0 24 1302-1325 1008-1031(1118)
32 PF09726 Macoilin: Transmembra 97.4 0.037 8E-07 71.6 26.6 145 815-965 459-610 (697)
33 KOG0971 Microtubule-associated 97.3 0.33 7.2E-06 61.5 32.0 29 1252-1280 897-925 (1243)
34 KOG0996 Structural maintenance 97.1 0.89 1.9E-05 59.9 34.5 48 1337-1387 1169-1219(1293)
35 PRK11637 AmiB activator; Provi 97.1 0.084 1.8E-06 65.5 25.4 24 952-975 229-252 (428)
36 TIGR02169 SMC_prok_A chromosom 97.1 3 6.6E-05 58.8 45.0 8 454-461 38-45 (1164)
37 KOG0164 Myosin class I heavy c 97.0 0.0085 1.8E-07 73.4 14.4 85 716-810 694-788 (1001)
38 TIGR02169 SMC_prok_A chromosom 97.0 3.6 7.7E-05 58.1 44.0 29 949-977 455-483 (1164)
39 KOG0250 DNA repair protein RAD 96.9 2.3 4.9E-05 56.3 35.5 45 1263-1307 914-958 (1074)
40 KOG0933 Structural maintenance 96.9 0.5 1.1E-05 61.0 28.8 21 88-112 30-50 (1174)
41 KOG0250 DNA repair protein RAD 96.9 0.56 1.2E-05 61.6 29.3 12 629-640 161-172 (1074)
42 PF00612 IQ: IQ calmodulin-bin 96.8 0.0014 3.1E-08 44.4 3.3 19 719-737 2-20 (21)
43 PRK04863 mukB cell division pr 96.8 2 4.3E-05 60.6 36.3 41 945-985 438-478 (1486)
44 PRK11637 AmiB activator; Provi 96.8 0.15 3.3E-06 63.2 23.7 32 951-982 221-252 (428)
45 KOG0996 Structural maintenance 96.7 1.5 3.3E-05 57.9 31.4 40 946-985 546-585 (1293)
46 KOG0971 Microtubule-associated 96.7 3.3 7.1E-05 53.1 34.4 41 945-985 507-547 (1243)
47 KOG2128 Ras GTPase-activating 96.7 0.035 7.7E-07 73.6 17.4 114 676-789 513-645 (1401)
48 KOG0933 Structural maintenance 96.7 0.98 2.1E-05 58.5 29.1 10 343-352 317-326 (1174)
49 PF07888 CALCOCO1: Calcium bin 96.7 0.22 4.8E-06 61.6 22.9 17 594-610 40-56 (546)
50 KOG4229 Myosin VII, myosin IXB 96.6 0.00072 1.6E-08 89.1 1.6 268 539-808 644-1008(1062)
51 PF09726 Macoilin: Transmembra 96.6 0.51 1.1E-05 61.3 26.7 65 916-980 589-653 (697)
52 KOG0163 Myosin class VI heavy 96.5 1.7 3.6E-05 54.4 28.5 15 287-301 319-333 (1259)
53 PF00612 IQ: IQ calmodulin-bin 96.5 0.002 4.3E-08 43.7 2.4 18 695-712 3-20 (21)
54 COG4942 Membrane-bound metallo 96.5 0.75 1.6E-05 55.3 25.2 54 931-984 199-252 (420)
55 PF12718 Tropomyosin_1: Tropom 96.5 0.46 9.9E-06 49.4 20.9 98 855-966 35-132 (143)
56 TIGR02168 SMC_prok_B chromosom 96.5 2.5 5.5E-05 59.6 35.5 8 633-640 125-132 (1179)
57 TIGR02168 SMC_prok_B chromosom 96.4 0.88 1.9E-05 64.2 30.4 7 454-460 38-44 (1179)
58 KOG1029 Endocytic adaptor prot 96.3 5.1 0.00011 50.6 37.5 34 816-849 444-477 (1118)
59 COG1196 Smc Chromosome segrega 96.3 9.7 0.00021 53.6 43.5 17 1313-1329 946-962 (1163)
60 KOG0925 mRNA splicing factor A 96.3 0.0035 7.6E-08 74.0 4.1 59 34-101 22-80 (699)
61 KOG4643 Uncharacterized coiled 96.2 0.64 1.4E-05 60.0 23.4 33 818-850 403-435 (1195)
62 PF07888 CALCOCO1: Calcium bin 96.1 4.4 9.5E-05 50.6 29.7 31 956-986 371-401 (546)
63 KOG1853 LIS1-interacting prote 96.1 0.89 1.9E-05 49.8 20.7 20 961-980 162-181 (333)
64 PF12128 DUF3584: Protein of u 96.1 12 0.00027 52.7 41.6 15 1392-1406 1066-1081(1201)
65 KOG2128 Ras GTPase-activating 96.0 0.096 2.1E-06 69.7 15.6 119 696-814 510-647 (1401)
66 COG1579 Zn-ribbon protein, pos 96.0 0.98 2.1E-05 50.6 21.3 35 907-941 89-123 (239)
67 KOG0995 Centromere-associated 96.0 1.8 3.9E-05 53.4 24.9 53 908-960 426-478 (581)
68 PRK09039 hypothetical protein; 95.9 0.63 1.4E-05 55.8 21.0 28 822-849 52-79 (343)
69 PRK02224 chromosome segregatio 95.9 2.1 4.5E-05 58.5 28.7 10 650-659 132-141 (880)
70 PF14662 CCDC155: Coiled-coil 95.9 0.96 2.1E-05 48.4 19.4 77 910-986 63-139 (193)
71 KOG0976 Rho/Rac1-interacting s 95.9 1.3 2.8E-05 55.7 23.0 34 906-939 350-383 (1265)
72 PF08317 Spc7: Spc7 kinetochor 95.8 1.6 3.5E-05 52.1 23.8 80 905-984 207-290 (325)
73 PRK03918 chromosome segregatio 95.8 1.1 2.4E-05 61.2 25.6 19 85-103 25-43 (880)
74 PF05667 DUF812: Protein of un 95.8 1.4 3.1E-05 56.3 24.2 73 906-978 446-527 (594)
75 PRK02224 chromosome segregatio 95.8 9.3 0.0002 52.3 34.3 9 452-460 36-44 (880)
76 PF14662 CCDC155: Coiled-coil 95.7 2 4.3E-05 46.1 21.0 35 906-940 101-135 (193)
77 PF00261 Tropomyosin: Tropomyo 95.7 0.26 5.6E-06 56.0 16.0 10 911-920 96-105 (237)
78 PRK09039 hypothetical protein; 95.7 1.2 2.7E-05 53.3 22.2 12 793-804 38-49 (343)
79 PF00261 Tropomyosin: Tropomyo 95.7 2.3 4.9E-05 48.4 23.4 40 944-983 178-217 (237)
80 COG4372 Uncharacterized protei 95.7 6.2 0.00013 46.2 28.6 69 909-977 212-280 (499)
81 PHA02562 46 endonuclease subun 95.6 2.1 4.5E-05 55.3 26.0 26 906-931 298-323 (562)
82 PTZ00014 myosin-A; Provisional 95.6 0.018 3.8E-07 75.9 6.9 41 719-759 778-818 (821)
83 KOG0980 Actin-binding protein 95.6 8.6 0.00019 49.7 29.2 10 1368-1377 934-943 (980)
84 PHA02562 46 endonuclease subun 95.6 2.5 5.4E-05 54.6 26.4 18 906-923 305-322 (562)
85 COG4372 Uncharacterized protei 95.5 3.5 7.6E-05 48.1 23.6 67 905-971 215-281 (499)
86 PRK03918 chromosome segregatio 95.5 2.8 6.1E-05 57.3 27.8 14 1392-1405 824-837 (880)
87 PF08317 Spc7: Spc7 kinetochor 95.5 2.9 6.4E-05 49.9 24.3 11 604-614 13-23 (325)
88 KOG0980 Actin-binding protein 95.4 7.4 0.00016 50.3 27.9 37 1341-1380 850-887 (980)
89 PF09755 DUF2046: Uncharacteri 95.4 7.1 0.00015 45.2 25.6 61 925-985 139-200 (310)
90 PF00038 Filament: Intermediat 95.3 8.4 0.00018 45.7 31.0 38 815-852 67-104 (312)
91 smart00015 IQ Short calmodulin 95.3 0.018 3.8E-07 41.3 2.9 20 718-737 3-22 (26)
92 COG3883 Uncharacterized protei 95.3 3.5 7.7E-05 46.8 22.3 72 905-976 146-217 (265)
93 PF12128 DUF3584: Protein of u 95.3 23 0.00049 50.1 39.8 32 675-706 227-258 (1201)
94 KOG1103 Predicted coiled-coil 95.2 3.9 8.5E-05 46.7 22.2 51 935-985 245-295 (561)
95 PF06785 UPF0242: Uncharacteri 95.0 7.8 0.00017 44.6 23.9 26 961-986 199-224 (401)
96 KOG0977 Nuclear envelope prote 95.0 2.5 5.4E-05 52.7 21.9 21 678-698 49-69 (546)
97 KOG0976 Rho/Rac1-interacting s 95.0 2.2 4.8E-05 53.7 20.9 63 911-973 376-441 (1265)
98 KOG1853 LIS1-interacting prote 94.9 7.4 0.00016 42.9 23.5 41 945-985 136-179 (333)
99 PF15619 Lebercilin: Ciliary p 94.9 5.8 0.00012 43.5 22.3 70 908-977 119-192 (194)
100 KOG0612 Rho-associated, coiled 94.9 11 0.00024 50.6 27.9 18 965-982 676-693 (1317)
101 KOG4360 Uncharacterized coiled 94.8 0.71 1.5E-05 55.5 16.0 10 1269-1278 507-516 (596)
102 PF05667 DUF812: Protein of un 94.8 1.4 3E-05 56.3 19.8 42 944-985 442-483 (594)
103 TIGR00606 rad50 rad50. This fa 94.8 7.6 0.00017 55.3 29.2 21 84-104 29-49 (1311)
104 COG1579 Zn-ribbon protein, pos 94.7 3.5 7.6E-05 46.3 20.3 35 908-942 97-131 (239)
105 PF15066 CAGE1: Cancer-associa 94.7 2.2 4.9E-05 50.9 19.4 29 815-843 330-358 (527)
106 KOG0999 Microtubule-associated 94.7 3.7 8.1E-05 49.9 21.3 22 949-970 170-191 (772)
107 PF15070 GOLGA2L5: Putative go 94.6 20 0.00043 46.4 31.8 36 906-941 152-187 (617)
108 KOG0977 Nuclear envelope prote 94.6 2.4 5.2E-05 52.8 20.4 78 908-985 107-184 (546)
109 smart00787 Spc7 Spc7 kinetocho 94.6 6.4 0.00014 46.5 23.2 52 908-959 205-256 (312)
110 TIGR00606 rad50 rad50. This fa 94.5 16 0.00035 52.1 31.4 23 1095-1117 1142-1164(1311)
111 PF13207 AAA_17: AAA domain; P 94.5 0.028 6.2E-07 56.4 3.2 23 85-107 1-23 (121)
112 PF09789 DUF2353: Uncharacteri 94.4 11 0.00025 44.1 24.3 25 854-878 78-102 (319)
113 COG1196 Smc Chromosome segrega 94.4 35 0.00075 48.2 44.4 29 949-977 460-488 (1163)
114 COG4942 Membrane-bound metallo 94.2 7.6 0.00016 47.0 22.6 8 862-869 94-101 (420)
115 KOG1003 Actin filament-coating 94.1 5.9 0.00013 42.5 19.1 75 907-981 109-183 (205)
116 TIGR03185 DNA_S_dndD DNA sulfu 94.1 13 0.00029 48.8 27.3 62 921-982 398-461 (650)
117 PF04091 Sec15: Exocyst comple 94.0 0.32 6.9E-06 57.5 11.1 132 1252-1384 177-311 (311)
118 KOG4674 Uncharacterized conser 93.8 44 0.00095 47.6 31.4 79 907-985 805-887 (1822)
119 KOG2129 Uncharacterized conser 93.7 13 0.00028 43.9 22.4 28 905-932 251-278 (552)
120 KOG1937 Uncharacterized conser 93.7 10 0.00022 45.5 21.9 34 597-640 75-108 (521)
121 PF13851 GAS: Growth-arrest sp 93.7 9.9 0.00021 42.1 21.1 38 906-943 92-129 (201)
122 PF10168 Nup88: Nuclear pore c 93.6 5.5 0.00012 52.4 22.0 21 555-575 421-441 (717)
123 KOG0612 Rho-associated, coiled 93.6 19 0.00041 48.5 26.1 11 1262-1272 1025-1035(1317)
124 smart00015 IQ Short calmodulin 93.6 0.071 1.5E-06 38.2 2.8 19 694-712 4-22 (26)
125 PF10174 Cast: RIM-binding pro 93.5 7.8 0.00017 51.1 23.1 61 817-881 302-362 (775)
126 KOG4673 Transcription factor T 93.4 28 0.00062 43.8 28.4 13 742-754 413-425 (961)
127 smart00787 Spc7 Spc7 kinetocho 93.4 19 0.00042 42.5 24.1 9 604-612 9-17 (312)
128 KOG0982 Centrosomal protein Nu 93.3 20 0.00042 42.9 23.2 9 976-984 409-417 (502)
129 PF13401 AAA_22: AAA domain; P 93.3 0.062 1.3E-06 54.6 3.0 29 81-109 2-30 (131)
130 KOG0994 Extracellular matrix g 93.2 40 0.00087 45.0 37.9 36 19-55 193-229 (1758)
131 PF13238 AAA_18: AAA domain; P 92.9 0.074 1.6E-06 53.7 3.0 22 86-107 1-22 (129)
132 PRK01156 chromosome segregatio 92.9 52 0.0011 45.2 35.6 23 1257-1279 732-754 (895)
133 COG5185 HEC1 Protein involved 92.8 28 0.0006 42.1 23.9 32 954-985 478-509 (622)
134 PF15619 Lebercilin: Ciliary p 92.7 18 0.0004 39.7 22.0 24 953-976 161-184 (194)
135 PRK09270 nucleoside triphospha 92.7 0.28 6E-06 55.5 7.4 34 79-112 29-62 (229)
136 KOG0964 Structural maintenance 92.6 8 0.00017 50.4 20.3 16 1368-1383 946-961 (1200)
137 PF05911 DUF869: Plant protein 92.6 26 0.00056 46.3 25.6 86 907-992 120-212 (769)
138 KOG0946 ER-Golgi vesicle-tethe 92.5 16 0.00035 46.9 22.4 28 487-514 389-416 (970)
139 cd02019 NK Nucleoside/nucleoti 92.5 0.11 2.4E-06 46.8 3.1 22 86-107 2-23 (69)
140 TIGR02322 phosphon_PhnN phosph 92.4 0.098 2.1E-06 56.6 3.2 24 84-107 2-25 (179)
141 KOG0979 Structural maintenance 92.3 17 0.00036 48.0 22.9 31 1253-1283 834-865 (1072)
142 PF13191 AAA_16: AAA ATPase do 92.3 0.094 2E-06 56.7 3.0 33 78-110 19-51 (185)
143 KOG4593 Mitotic checkpoint pro 92.3 42 0.00091 42.9 30.0 20 966-985 295-314 (716)
144 KOG0946 ER-Golgi vesicle-tethe 92.3 9.4 0.0002 48.9 20.0 21 288-308 143-163 (970)
145 PF15070 GOLGA2L5: Putative go 92.2 20 0.00043 46.4 23.8 11 1419-1429 594-604 (617)
146 PF08614 ATG16: Autophagy prot 92.2 0.91 2E-05 50.0 10.5 61 924-984 119-179 (194)
147 KOG1003 Actin filament-coating 92.2 19 0.00042 38.8 19.8 24 917-940 133-156 (205)
148 TIGR03015 pepcterm_ATPase puta 92.1 0.15 3.1E-06 59.1 4.5 28 81-108 41-68 (269)
149 cd00009 AAA The AAA+ (ATPases 92.1 0.19 4.1E-06 51.4 4.8 29 80-108 16-44 (151)
150 PF07111 HCR: Alpha helical co 92.1 45 0.00097 42.7 25.6 30 908-937 198-227 (739)
151 COG0444 DppD ABC-type dipeptid 92.0 0.098 2.1E-06 60.5 2.7 28 81-108 29-56 (316)
152 PRK10884 SH3 domain-containing 91.9 1.7 3.7E-05 48.0 12.1 77 906-985 92-168 (206)
153 PRK04863 mukB cell division pr 91.8 82 0.0018 45.2 37.8 9 647-655 182-190 (1486)
154 PRK06696 uridine kinase; Valid 91.8 0.21 4.6E-06 56.2 5.2 40 68-109 9-48 (223)
155 TIGR00150 HI0065_YjeE ATPase, 91.7 0.27 5.9E-06 50.4 5.2 27 81-107 20-46 (133)
156 PF10168 Nup88: Nuclear pore c 91.7 19 0.00041 47.5 23.2 52 475-527 377-433 (717)
157 PF04156 IncA: IncA protein; 91.7 5.8 0.00013 43.4 16.1 60 919-978 128-187 (191)
158 PF13870 DUF4201: Domain of un 91.4 24 0.00052 38.2 21.1 22 954-975 150-171 (177)
159 cd00820 PEPCK_HprK Phosphoenol 91.4 0.16 3.5E-06 49.9 3.1 23 82-104 14-36 (107)
160 PF09789 DUF2353: Uncharacteri 91.3 34 0.00074 40.3 22.2 21 963-983 196-216 (319)
161 KOG4593 Mitotic checkpoint pro 91.2 54 0.0012 42.0 30.9 25 1365-1389 631-662 (716)
162 PRK05480 uridine/cytidine kina 91.2 0.18 3.9E-06 56.1 3.8 27 81-107 4-30 (209)
163 PF01583 APS_kinase: Adenylyls 91.2 0.22 4.8E-06 52.4 4.1 29 83-111 2-30 (156)
164 COG0194 Gmk Guanylate kinase [ 91.1 0.15 3.2E-06 54.6 2.8 26 82-107 3-28 (191)
165 PF15254 CCDC14: Coiled-coil d 91.1 58 0.0013 42.1 25.1 58 913-970 493-550 (861)
166 PF09730 BicD: Microtubule-ass 91.1 31 0.00068 45.0 23.6 60 922-981 122-181 (717)
167 KOG4674 Uncharacterized conser 91.1 95 0.0021 44.5 37.3 72 821-892 764-835 (1822)
168 PRK00300 gmk guanylate kinase; 91.0 0.16 3.4E-06 56.3 3.0 26 82-107 4-29 (205)
169 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.0 21 0.00045 36.7 19.2 32 954-985 96-127 (132)
170 KOG2891 Surface glycoprotein [ 91.0 21 0.00046 39.8 18.9 28 588-615 107-138 (445)
171 cd01131 PilT Pilus retraction 91.0 0.17 3.7E-06 55.8 3.3 25 85-109 3-27 (198)
172 PF00004 AAA: ATPase family as 91.0 0.16 3.4E-06 51.5 2.8 23 86-108 1-23 (132)
173 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.9 10 0.00023 38.9 16.0 65 906-973 65-129 (132)
174 PRK13833 conjugal transfer pro 90.9 0.25 5.4E-06 58.5 4.7 34 74-109 137-170 (323)
175 cd01918 HprK_C HprK/P, the bif 90.9 0.19 4.1E-06 52.5 3.3 25 82-106 13-37 (149)
176 PF10481 CENP-F_N: Cenp-F N-te 90.8 4.2 9.1E-05 45.5 13.4 40 949-988 95-134 (307)
177 PF00485 PRK: Phosphoribulokin 90.7 0.17 3.8E-06 55.5 3.0 25 86-110 2-26 (194)
178 KOG0994 Extracellular matrix g 90.7 76 0.0016 42.7 35.4 11 970-980 1731-1741(1758)
179 PF09755 DUF2046: Uncharacteri 90.7 39 0.00085 39.4 25.8 63 909-977 137-199 (310)
180 COG1340 Uncharacterized archae 90.7 38 0.00083 39.2 25.8 17 957-973 229-245 (294)
181 cd02023 UMPK Uridine monophosp 90.6 0.18 3.9E-06 55.6 3.1 22 86-107 2-23 (198)
182 cd01129 PulE-GspE PulE/GspE Th 90.6 0.28 6E-06 56.7 4.7 34 74-108 72-105 (264)
183 KOG0964 Structural maintenance 90.6 62 0.0014 42.8 25.0 77 909-985 420-496 (1200)
184 PF15397 DUF4618: Domain of un 90.6 36 0.00078 38.8 23.6 33 954-986 191-223 (258)
185 TIGR01843 type_I_hlyD type I s 90.4 35 0.00077 42.1 23.5 25 913-937 202-226 (423)
186 PF05483 SCP-1: Synaptonemal c 90.4 62 0.0013 41.2 26.9 44 945-988 583-626 (786)
187 KOG0018 Structural maintenance 90.4 80 0.0017 42.4 28.7 83 902-985 809-892 (1141)
188 TIGR00235 udk uridine kinase. 90.3 0.24 5.2E-06 55.1 3.6 28 81-108 4-31 (207)
189 PRK06547 hypothetical protein; 90.2 0.4 8.7E-06 51.6 5.2 28 80-107 12-39 (172)
190 KOG0982 Centrosomal protein Nu 90.2 46 0.00099 39.9 21.7 28 957-984 361-388 (502)
191 PRK05541 adenylylsulfate kinas 90.2 0.21 4.6E-06 53.9 3.1 29 81-109 5-33 (176)
192 TIGR03420 DnaA_homol_Hda DnaA 90.2 0.43 9.2E-06 53.6 5.6 38 72-109 27-64 (226)
193 PTZ00301 uridine kinase; Provi 90.1 0.22 4.7E-06 55.4 3.2 24 85-108 5-28 (210)
194 PHA02544 44 clamp loader, smal 90.1 0.32 7E-06 57.8 4.8 52 52-107 13-67 (316)
195 PRK12402 replication factor C 90.1 0.38 8.3E-06 57.6 5.5 32 77-108 30-61 (337)
196 KOG4360 Uncharacterized coiled 90.0 18 0.0004 44.1 18.7 18 915-932 234-251 (596)
197 PRK08233 hypothetical protein; 90.0 0.19 4.2E-06 54.3 2.5 25 84-108 4-28 (182)
198 COG3883 Uncharacterized protei 90.0 41 0.00089 38.5 23.9 22 819-840 41-62 (265)
199 smart00382 AAA ATPases associa 90.0 0.21 4.6E-06 50.4 2.7 28 83-110 2-29 (148)
200 PRK06762 hypothetical protein; 89.9 0.27 5.9E-06 52.4 3.6 25 83-107 2-26 (166)
201 PF10473 CENP-F_leu_zip: Leuci 89.8 18 0.00038 37.5 16.2 12 860-871 22-33 (140)
202 PF13851 GAS: Growth-arrest sp 89.7 37 0.0008 37.6 21.3 48 906-953 85-132 (201)
203 TIGR03007 pepcterm_ChnLen poly 89.7 26 0.00057 44.5 21.9 16 905-920 252-267 (498)
204 PRK07261 topology modulation p 89.7 0.24 5.2E-06 53.3 3.0 23 85-107 2-24 (171)
205 TIGR02173 cyt_kin_arch cytidyl 89.7 0.23 4.9E-06 53.1 2.8 23 85-107 2-24 (171)
206 COG1660 Predicted P-loop-conta 89.7 0.21 4.5E-06 55.8 2.4 19 85-103 3-21 (286)
207 cd00227 CPT Chloramphenicol (C 89.7 0.28 6.2E-06 52.9 3.5 25 83-107 2-26 (175)
208 PRK04778 septation ring format 89.6 35 0.00075 44.2 22.9 179 795-984 254-432 (569)
209 cd02020 CMPK Cytidine monophos 89.6 0.26 5.7E-06 51.1 3.1 22 86-107 2-23 (147)
210 cd02028 UMPK_like Uridine mono 89.5 0.27 5.8E-06 53.4 3.1 24 86-109 2-25 (179)
211 KOG1937 Uncharacterized conser 89.4 58 0.0013 39.4 22.9 19 965-983 497-515 (521)
212 PF03668 ATP_bind_2: P-loop AT 89.4 0.24 5.3E-06 56.8 2.8 20 84-103 2-21 (284)
213 PRK08084 DNA replication initi 89.3 0.57 1.2E-05 53.2 5.8 40 70-109 32-71 (235)
214 PRK08118 topology modulation p 89.1 0.31 6.7E-06 52.3 3.2 24 84-107 2-25 (167)
215 cd02025 PanK Pantothenate kina 89.1 0.28 6.2E-06 55.0 3.1 23 86-108 2-24 (220)
216 TIGR02680 conserved hypothetic 89.1 1.3E+02 0.0029 43.1 29.7 27 84-110 25-51 (1353)
217 TIGR02680 conserved hypothetic 89.1 58 0.0013 46.6 26.1 13 810-822 241-253 (1353)
218 PF13245 AAA_19: Part of AAA d 89.0 0.51 1.1E-05 43.5 4.1 28 82-109 9-36 (76)
219 PF04111 APG6: Autophagy prote 89.0 2.1 4.5E-05 50.7 10.2 32 953-984 103-134 (314)
220 PF05010 TACC: Transforming ac 89.0 42 0.0009 37.2 22.8 18 860-877 81-98 (207)
221 PRK00131 aroK shikimate kinase 89.0 0.35 7.5E-06 51.8 3.6 26 82-107 3-28 (175)
222 PF07724 AAA_2: AAA domain (Cd 88.8 0.36 7.8E-06 52.0 3.5 24 85-108 5-28 (171)
223 KOG0018 Structural maintenance 88.8 1E+02 0.0022 41.5 34.2 40 719-758 211-250 (1141)
224 PRK14737 gmk guanylate kinase; 88.8 0.29 6.2E-06 53.5 2.7 26 82-107 3-28 (186)
225 cd01130 VirB11-like_ATPase Typ 88.7 0.3 6.5E-06 53.4 2.9 25 83-107 25-49 (186)
226 PRK10078 ribose 1,5-bisphospho 88.7 0.26 5.7E-06 53.8 2.4 25 83-107 2-26 (186)
227 PRK12377 putative replication 88.7 0.69 1.5E-05 52.8 5.8 44 65-110 85-128 (248)
228 KOG0978 E3 ubiquitin ligase in 88.6 89 0.0019 40.6 37.9 59 930-988 561-619 (698)
229 PF08614 ATG16: Autophagy prot 88.6 4.8 0.0001 44.3 12.2 66 912-977 114-179 (194)
230 PRK10929 putative mechanosensi 88.6 59 0.0013 44.9 24.4 22 964-985 266-287 (1109)
231 PF00910 RNA_helicase: RNA hel 88.5 0.33 7.2E-06 47.9 2.8 25 86-110 1-25 (107)
232 cd00071 GMPK Guanosine monopho 88.5 0.27 6E-06 50.8 2.3 22 86-107 2-23 (137)
233 TIGR02782 TrbB_P P-type conjug 88.5 0.62 1.3E-05 54.9 5.5 27 83-109 132-158 (299)
234 KOG4403 Cell surface glycoprot 88.5 34 0.00074 40.8 19.0 23 827-849 256-278 (575)
235 cd02024 NRK1 Nicotinamide ribo 88.5 0.31 6.7E-06 53.2 2.7 22 86-107 2-23 (187)
236 PTZ00121 MAEBL; Provisional 88.5 1.2E+02 0.0026 42.0 33.9 32 68-100 249-283 (2084)
237 TIGR01843 type_I_hlyD type I s 88.4 47 0.001 41.0 22.5 33 906-938 202-234 (423)
238 PRK00889 adenylylsulfate kinas 88.3 0.5 1.1E-05 50.9 4.3 29 82-110 3-31 (175)
239 TIGR01313 therm_gnt_kin carboh 88.2 0.28 6.1E-06 52.1 2.2 22 86-107 1-22 (163)
240 PF04437 RINT1_TIP1: RINT-1 / 88.1 11 0.00024 47.9 16.7 124 1252-1381 353-491 (494)
241 PRK14961 DNA polymerase III su 88.1 0.81 1.8E-05 55.5 6.3 54 51-108 7-63 (363)
242 COG1102 Cmk Cytidylate kinase 88.1 0.38 8.3E-06 50.2 2.9 23 86-108 3-25 (179)
243 PF05729 NACHT: NACHT domain 88.1 0.44 9.5E-06 50.3 3.6 27 85-111 2-28 (166)
244 PRK13851 type IV secretion sys 87.8 0.43 9.3E-06 57.1 3.6 26 83-108 162-187 (344)
245 KOG0963 Transcription factor/C 87.8 89 0.0019 39.6 27.5 11 974-984 348-358 (629)
246 PRK14738 gmk guanylate kinase; 87.8 0.41 8.9E-06 53.2 3.2 26 81-106 11-36 (206)
247 TIGR01420 pilT_fam pilus retra 87.7 0.37 8E-06 58.0 3.0 34 74-108 114-147 (343)
248 PF12846 AAA_10: AAA-like doma 87.7 0.43 9.4E-06 55.8 3.6 29 83-111 1-29 (304)
249 PLN03025 replication factor C 87.7 0.67 1.4E-05 55.2 5.2 56 51-108 4-59 (319)
250 TIGR00554 panK_bact pantothena 87.7 0.83 1.8E-05 53.3 5.7 29 81-109 60-88 (290)
251 PF05701 WEMBL: Weak chloropla 87.6 95 0.0021 39.7 33.4 12 972-983 339-350 (522)
252 KOG0804 Cytoplasmic Zn-finger 87.6 18 0.00039 43.6 16.3 12 967-978 432-443 (493)
253 cd02027 APSK Adenosine 5'-phos 87.6 0.44 9.6E-06 50.0 3.1 24 86-109 2-25 (149)
254 PF04111 APG6: Autophagy prote 87.6 6 0.00013 46.9 12.9 77 909-985 45-121 (314)
255 COG4608 AppF ABC-type oligopep 87.5 0.38 8.2E-06 54.6 2.7 30 81-110 37-66 (268)
256 TIGR02928 orc1/cdc6 family rep 87.5 0.58 1.3E-05 56.8 4.7 36 74-109 31-66 (365)
257 TIGR03263 guanyl_kin guanylate 87.5 0.32 7E-06 52.6 2.1 24 84-107 2-25 (180)
258 PF13671 AAA_33: AAA domain; P 87.4 0.35 7.7E-06 49.9 2.3 23 86-108 2-24 (143)
259 PRK06217 hypothetical protein; 87.3 0.4 8.7E-06 52.2 2.8 23 85-107 3-25 (183)
260 KOG0979 Structural maintenance 87.3 57 0.0012 43.4 21.8 37 941-977 317-353 (1072)
261 PRK13900 type IV secretion sys 87.2 0.59 1.3E-05 55.8 4.3 24 84-107 161-184 (332)
262 PRK08903 DnaA regulatory inact 87.2 0.89 1.9E-05 51.2 5.6 29 81-109 40-68 (227)
263 PF10186 Atg14: UV radiation r 87.1 17 0.00037 42.7 16.6 29 909-937 72-100 (302)
264 TIGR02524 dot_icm_DotB Dot/Icm 87.1 0.5 1.1E-05 57.0 3.6 28 82-109 133-160 (358)
265 PF00038 Filament: Intermediat 86.9 73 0.0016 37.7 34.1 36 906-941 215-250 (312)
266 COG1125 OpuBA ABC-type proline 86.9 0.41 8.8E-06 53.5 2.5 26 83-108 27-52 (309)
267 COG0572 Udk Uridine kinase [Nu 86.9 0.48 1E-05 52.4 3.0 23 86-108 11-33 (218)
268 PRK03846 adenylylsulfate kinas 86.7 0.74 1.6E-05 50.8 4.5 31 80-110 21-51 (198)
269 TIGR02525 plasmid_TraJ plasmid 86.7 0.48 1E-05 57.3 3.2 27 83-109 149-175 (372)
270 COG0529 CysC Adenylylsulfate k 86.5 0.94 2E-05 48.1 4.7 43 68-111 9-51 (197)
271 KOG0249 LAR-interacting protei 86.5 56 0.0012 41.7 20.1 20 1303-1330 756-775 (916)
272 cd00464 SK Shikimate kinase (S 86.5 0.51 1.1E-05 49.4 2.9 23 85-107 1-23 (154)
273 PTZ00112 origin recognition co 86.5 1.3 2.8E-05 57.8 6.8 45 66-110 764-808 (1164)
274 PRK10751 molybdopterin-guanine 86.4 0.54 1.2E-05 50.5 3.1 27 84-110 7-33 (173)
275 TIGR01005 eps_transp_fam exopo 86.4 34 0.00074 45.9 20.8 12 630-641 85-96 (754)
276 PRK00440 rfc replication facto 86.4 0.85 1.8E-05 54.1 5.1 55 52-108 9-63 (319)
277 PF00437 T2SE: Type II/IV secr 86.4 0.47 1E-05 55.1 2.8 28 82-109 126-153 (270)
278 cd01120 RecA-like_NTPases RecA 86.3 0.58 1.3E-05 49.0 3.3 24 86-109 2-25 (165)
279 COG2433 Uncharacterized conser 86.2 6.1 0.00013 49.2 12.0 34 950-983 475-508 (652)
280 COG4172 ABC-type uncharacteriz 86.0 0.45 9.7E-06 56.3 2.3 27 83-109 36-62 (534)
281 PRK01156 chromosome segregatio 86.0 1.6E+02 0.0034 40.6 35.2 32 952-983 412-443 (895)
282 PF03205 MobB: Molybdopterin g 85.7 0.68 1.5E-05 48.1 3.3 27 85-111 2-28 (140)
283 PHA00729 NTP-binding motif con 85.7 1.1 2.4E-05 50.1 5.2 38 70-108 5-42 (226)
284 PF00769 ERM: Ezrin/radixin/mo 85.7 24 0.00052 40.4 16.0 7 966-972 106-112 (246)
285 COG0563 Adk Adenylate kinase a 85.7 0.61 1.3E-05 50.5 3.0 22 86-107 3-24 (178)
286 COG0419 SbcC ATPase involved i 85.6 1.6E+02 0.0035 40.5 28.1 39 1257-1295 739-777 (908)
287 KOG0999 Microtubule-associated 85.6 1E+02 0.0022 38.2 26.8 16 1263-1278 621-636 (772)
288 PRK14956 DNA polymerase III su 85.6 1 2.3E-05 55.7 5.4 54 52-109 10-66 (484)
289 KOG4460 Nuclear pore complex, 85.5 87 0.0019 38.8 20.6 27 906-932 661-687 (741)
290 cd02021 GntK Gluconate kinase 85.4 0.57 1.2E-05 49.0 2.6 22 86-107 2-23 (150)
291 KOG1899 LAR transmembrane tyro 85.3 28 0.0006 43.4 16.6 22 1308-1329 706-727 (861)
292 PF02367 UPF0079: Uncharacteri 85.3 0.69 1.5E-05 46.8 3.0 27 81-107 13-39 (123)
293 PF10146 zf-C4H2: Zinc finger- 85.3 8.7 0.00019 43.3 11.9 40 906-945 38-77 (230)
294 PF08826 DMPK_coil: DMPK coile 85.3 10 0.00022 33.3 9.7 45 932-976 15-59 (61)
295 COG1124 DppF ABC-type dipeptid 85.3 0.65 1.4E-05 51.8 3.1 28 81-108 31-58 (252)
296 PRK00411 cdc6 cell division co 85.3 0.95 2.1E-05 55.6 4.9 34 77-110 49-82 (394)
297 PRK14964 DNA polymerase III su 85.2 0.96 2.1E-05 56.6 4.8 57 52-111 5-63 (491)
298 PRK09825 idnK D-gluconate kina 85.2 0.72 1.6E-05 49.9 3.3 26 83-108 3-28 (176)
299 COG1123 ATPase components of v 85.2 0.5 1.1E-05 58.9 2.3 30 81-110 33-62 (539)
300 COG5185 HEC1 Protein involved 85.1 1E+02 0.0022 37.6 24.9 19 1063-1081 502-520 (622)
301 PRK05057 aroK shikimate kinase 85.1 0.71 1.5E-05 49.8 3.2 25 83-107 4-28 (172)
302 TIGR01360 aden_kin_iso1 adenyl 85.0 0.67 1.5E-05 50.3 3.1 23 85-107 5-27 (188)
303 PRK06893 DNA replication initi 85.0 1.4 3E-05 49.8 5.7 40 70-110 27-66 (229)
304 PF03266 NTPase_1: NTPase; In 84.9 0.72 1.6E-05 49.5 3.2 24 86-109 2-25 (168)
305 TIGR02533 type_II_gspE general 84.9 0.82 1.8E-05 57.5 4.1 35 73-108 233-267 (486)
306 PF13555 AAA_29: P-loop contai 84.8 0.83 1.8E-05 40.2 2.9 22 85-106 25-46 (62)
307 PRK04182 cytidylate kinase; Pr 84.7 0.64 1.4E-05 50.0 2.7 23 85-107 2-24 (180)
308 PRK13764 ATPase; Provisional 84.7 0.74 1.6E-05 58.7 3.6 27 83-109 257-283 (602)
309 TIGR02902 spore_lonB ATP-depen 84.7 1.1 2.3E-05 57.2 5.1 33 76-108 79-111 (531)
310 COG2884 FtsE Predicted ATPase 84.7 0.67 1.5E-05 49.7 2.7 26 82-107 27-52 (223)
311 cd02029 PRK_like Phosphoribulo 84.7 0.77 1.7E-05 52.5 3.3 24 86-109 2-25 (277)
312 PRK05342 clpX ATP-dependent pr 84.6 1.6 3.4E-05 53.7 6.3 63 45-107 59-132 (412)
313 PRK04040 adenylate kinase; Pro 84.6 0.71 1.5E-05 50.5 3.0 24 84-107 3-26 (188)
314 PRK06645 DNA polymerase III su 84.6 1.2 2.6E-05 56.0 5.4 56 52-110 13-70 (507)
315 PRK09111 DNA polymerase III su 84.6 0.88 1.9E-05 58.5 4.2 55 52-110 16-73 (598)
316 PRK08727 hypothetical protein; 84.5 1.4 3E-05 50.0 5.4 31 80-110 38-68 (233)
317 PF09730 BicD: Microtubule-ass 84.5 71 0.0015 41.9 20.9 10 1197-1206 446-455 (717)
318 PF00308 Bac_DnaA: Bacterial d 84.4 1.5 3.3E-05 49.2 5.6 42 69-110 18-61 (219)
319 PRK08116 hypothetical protein; 84.3 1.7 3.7E-05 50.4 6.1 45 66-110 96-141 (268)
320 PF15397 DUF4618: Domain of un 84.2 84 0.0018 36.0 25.1 34 947-980 191-224 (258)
321 PRK14527 adenylate kinase; Pro 84.2 0.9 1.9E-05 49.8 3.6 28 81-108 4-31 (191)
322 KOG0995 Centromere-associated 84.1 1.3E+02 0.0028 38.0 33.2 25 734-758 265-289 (581)
323 PF10498 IFT57: Intra-flagella 83.9 15 0.00032 44.3 13.8 7 573-579 63-69 (359)
324 PF07475 Hpr_kinase_C: HPr Ser 83.8 0.89 1.9E-05 48.3 3.1 23 83-105 18-40 (171)
325 PF10146 zf-C4H2: Zinc finger- 83.6 15 0.00033 41.4 12.9 72 906-984 31-102 (230)
326 PRK07667 uridine kinase; Provi 83.6 1.4 3E-05 48.4 4.8 26 84-109 18-43 (193)
327 PRK11281 hypothetical protein; 83.6 75 0.0016 44.1 21.7 178 801-981 58-259 (1113)
328 KOG0978 E3 ubiquitin ligase in 83.6 1.6E+02 0.0034 38.5 30.9 24 959-982 576-599 (698)
329 COG3074 Uncharacterized protei 83.5 9 0.00019 33.8 8.4 46 940-985 16-61 (79)
330 PRK06761 hypothetical protein; 83.5 0.76 1.7E-05 53.3 2.7 26 84-109 4-29 (282)
331 PRK13894 conjugal transfer ATP 83.3 0.88 1.9E-05 54.0 3.2 27 83-109 148-174 (319)
332 PRK05537 bifunctional sulfate 83.3 1.2 2.5E-05 57.2 4.6 45 63-109 374-418 (568)
333 KOG1962 B-cell receptor-associ 83.3 5.9 0.00013 43.6 9.2 57 917-973 154-210 (216)
334 PRK05416 glmZ(sRNA)-inactivati 83.2 0.79 1.7E-05 53.5 2.8 21 83-103 6-26 (288)
335 PRK15453 phosphoribulokinase; 83.2 0.91 2E-05 52.3 3.2 26 82-107 4-29 (290)
336 PF14197 Cep57_CLD_2: Centroso 83.2 11 0.00025 34.0 9.4 64 912-975 3-66 (69)
337 PF07728 AAA_5: AAA domain (dy 83.2 0.92 2E-05 46.7 3.0 22 86-107 2-23 (139)
338 PRK08356 hypothetical protein; 83.1 0.77 1.7E-05 50.5 2.5 22 84-105 6-27 (195)
339 PRK12704 phosphodiesterase; Pr 83.1 48 0.001 42.3 18.5 14 1339-1352 415-428 (520)
340 cd03115 SRP The signal recogni 83.1 1.1 2.4E-05 48.1 3.7 27 85-111 2-28 (173)
341 PRK13342 recombination factor 83.1 1.4 3E-05 54.6 5.0 43 64-107 18-60 (413)
342 PF03215 Rad17: Rad17 cell cyc 83.0 1.2 2.5E-05 56.4 4.3 59 49-107 8-69 (519)
343 PRK14974 cell division protein 83.0 1.9 4.2E-05 51.4 6.0 31 81-111 138-168 (336)
344 COG2805 PilT Tfp pilus assembl 83.0 0.94 2E-05 51.9 3.1 78 21-109 70-151 (353)
345 PRK08154 anaerobic benzoate ca 83.0 1.5 3.3E-05 51.9 5.1 48 60-107 106-157 (309)
346 PF03193 DUF258: Protein of un 83.0 1.1 2.3E-05 47.6 3.4 25 82-106 34-58 (161)
347 PRK00698 tmk thymidylate kinas 82.9 1.2 2.6E-05 49.1 3.9 28 83-110 3-30 (205)
348 COG0802 Predicted ATPase or ki 82.7 2.3 4.9E-05 44.3 5.5 29 81-109 23-51 (149)
349 PF00158 Sigma54_activat: Sigm 82.7 1.5 3.2E-05 47.2 4.4 25 81-105 20-44 (168)
350 PF04665 Pox_A32: Poxvirus A32 82.7 0.93 2E-05 51.2 2.9 27 83-109 13-39 (241)
351 PF10234 Cluap1: Clusterin-ass 82.6 31 0.00067 39.7 14.9 14 598-611 2-15 (267)
352 TIGR03499 FlhF flagellar biosy 82.5 1.2 2.6E-05 52.1 3.9 45 66-110 169-221 (282)
353 TIGR00064 ftsY signal recognit 82.5 2.3 5E-05 49.4 6.2 47 65-111 45-100 (272)
354 KOG0056 Heavy metal exporter H 82.5 1.2 2.6E-05 53.7 3.9 42 81-122 562-603 (790)
355 PRK05896 DNA polymerase III su 82.5 1.9 4.1E-05 55.0 5.9 58 50-111 6-66 (605)
356 PF10174 Cast: RIM-binding pro 82.4 1.9E+02 0.0041 38.7 34.2 14 542-555 153-166 (775)
357 KOG4809 Rab6 GTPase-interactin 82.3 80 0.0017 39.2 18.6 34 816-849 331-364 (654)
358 TIGR00176 mobB molybdopterin-g 82.3 1.2 2.5E-05 47.2 3.4 26 86-111 2-27 (155)
359 PF10212 TTKRSYEDQ: Predicted 82.3 1.1E+02 0.0025 38.2 20.4 10 441-450 110-119 (518)
360 TIGR02881 spore_V_K stage V sp 82.3 1.1 2.3E-05 51.8 3.4 31 81-111 40-70 (261)
361 TIGR00455 apsK adenylylsulfate 82.3 1.6 3.5E-05 47.4 4.6 29 81-109 16-44 (184)
362 COG4172 ABC-type uncharacteriz 82.2 0.72 1.6E-05 54.6 1.9 31 80-110 310-340 (534)
363 COG1382 GimC Prefoldin, chaper 82.2 26 0.00056 35.1 12.2 41 944-984 72-112 (119)
364 PRK15093 antimicrobial peptide 82.2 1 2.2E-05 54.0 3.2 27 81-107 31-57 (330)
365 PRK14732 coaE dephospho-CoA ki 82.2 1.2 2.5E-05 49.2 3.4 47 86-137 2-53 (196)
366 PRK11308 dppF dipeptide transp 82.1 1 2.2E-05 53.9 3.2 27 81-107 39-65 (327)
367 PF00625 Guanylate_kin: Guanyl 82.1 1.1 2.5E-05 48.6 3.4 25 83-107 2-26 (183)
368 TIGR01359 UMP_CMP_kin_fam UMP- 82.1 1 2.2E-05 48.8 2.9 23 86-108 2-24 (183)
369 cd03293 ABC_NrtD_SsuB_transpor 82.1 1 2.2E-05 50.6 3.0 27 81-107 28-54 (220)
370 PRK09112 DNA polymerase III su 82.1 1.8 3.9E-05 52.1 5.3 41 69-109 30-71 (351)
371 PRK14955 DNA polymerase III su 82.0 1.9 4.2E-05 53.0 5.7 55 53-109 9-64 (397)
372 PRK06620 hypothetical protein; 82.0 1.8 4E-05 48.4 5.0 20 84-103 45-64 (214)
373 TIGR03319 YmdA_YtgF conserved 82.0 66 0.0014 41.0 19.2 126 853-990 20-145 (514)
374 TIGR02868 CydC thiol reductant 82.0 0.75 1.6E-05 58.9 2.1 28 81-108 359-386 (529)
375 PRK14528 adenylate kinase; Pro 81.9 1.2 2.5E-05 48.7 3.3 24 84-107 2-25 (186)
376 PRK15177 Vi polysaccharide exp 81.9 1.1 2.3E-05 50.2 3.1 27 81-107 11-37 (213)
377 TIGR01166 cbiO cobalt transpor 81.9 1.1 2.4E-05 49.0 3.1 26 81-106 16-41 (190)
378 cd02034 CooC The accessory pro 81.8 1.4 3E-05 44.3 3.5 25 86-110 2-26 (116)
379 TIGR02673 FtsE cell division A 81.8 1.1 2.3E-05 50.0 3.1 27 81-107 26-52 (214)
380 PF00005 ABC_tran: ABC transpo 81.7 1 2.2E-05 46.1 2.7 26 82-107 10-35 (137)
381 PRK10646 ADP-binding protein; 81.7 2.3 5.1E-05 44.7 5.3 25 83-107 28-52 (153)
382 KOG0249 LAR-interacting protei 81.7 98 0.0021 39.7 19.5 25 910-934 233-257 (916)
383 PRK04195 replication factor C 81.6 1.5 3.2E-05 55.5 4.6 26 82-107 38-63 (482)
384 TIGR00960 3a0501s02 Type II (G 81.6 1.1 2.4E-05 50.0 3.1 27 81-107 27-53 (216)
385 PRK06835 DNA replication prote 81.6 2.6 5.5E-05 50.3 6.3 29 82-110 182-210 (329)
386 PRK06921 hypothetical protein; 81.6 1.5 3.3E-05 50.7 4.3 28 82-109 116-143 (266)
387 PRK15079 oligopeptide ABC tran 81.6 1.1 2.3E-05 53.8 3.1 27 81-107 45-71 (331)
388 PRK09473 oppD oligopeptide tra 81.6 1 2.2E-05 53.9 2.9 27 81-107 40-66 (330)
389 PRK14957 DNA polymerase III su 81.5 2.1 4.6E-05 54.3 5.8 54 52-109 8-64 (546)
390 PRK04220 2-phosphoglycerate ki 81.4 1.7 3.7E-05 50.7 4.6 27 81-107 90-116 (301)
391 PF01695 IstB_IS21: IstB-like 81.4 2.1 4.6E-05 46.4 5.1 30 81-110 45-74 (178)
392 TIGR02788 VirB11 P-type DNA tr 81.4 0.89 1.9E-05 53.9 2.4 25 83-107 144-168 (308)
393 COG4088 Predicted nucleotide k 81.4 1.6 3.4E-05 47.4 3.9 26 85-110 3-28 (261)
394 TIGR03574 selen_PSTK L-seryl-t 81.2 1.1 2.5E-05 51.2 3.1 24 86-109 2-25 (249)
395 cd03260 ABC_PstB_phosphate_tra 81.2 1.2 2.6E-05 50.2 3.2 27 81-107 24-50 (227)
396 PF06785 UPF0242: Uncharacteri 81.2 1.2E+02 0.0025 35.5 21.4 17 1069-1085 308-324 (401)
397 PRK14969 DNA polymerase III su 81.2 1.9 4.2E-05 54.9 5.4 55 52-109 8-64 (527)
398 PRK03839 putative kinase; Prov 81.2 1.2 2.6E-05 48.2 3.1 23 85-107 2-24 (180)
399 cd03225 ABC_cobalt_CbiO_domain 81.2 1.2 2.6E-05 49.5 3.2 27 81-107 25-51 (211)
400 PRK10416 signal recognition pa 81.2 1.5 3.2E-05 52.1 4.1 31 81-111 112-142 (318)
401 PRK00106 hypothetical protein; 81.1 84 0.0018 40.0 19.4 134 839-981 38-171 (535)
402 TIGR02903 spore_lon_C ATP-depe 81.1 2 4.3E-05 55.8 5.5 35 76-110 168-202 (615)
403 TIGR03007 pepcterm_ChnLen poly 81.0 1.7E+02 0.0037 37.2 23.8 29 912-940 315-343 (498)
404 cd03259 ABC_Carb_Solutes_like 81.0 1.2 2.7E-05 49.6 3.2 27 81-107 24-50 (213)
405 TIGR00634 recN DNA repair prot 81.0 1.3E+02 0.0029 38.9 22.0 9 647-655 105-113 (563)
406 PRK15422 septal ring assembly 81.0 11 0.00024 34.5 8.3 35 950-984 26-60 (79)
407 PRK14531 adenylate kinase; Pro 80.9 1.3 2.9E-05 48.1 3.4 24 84-107 3-26 (183)
408 KOG2129 Uncharacterized conser 80.9 1.3E+02 0.0029 36.0 20.0 28 910-937 249-276 (552)
409 PRK13768 GTPase; Provisional 80.7 1.3 2.9E-05 50.8 3.4 27 85-111 4-30 (253)
410 cd03255 ABC_MJ0796_Lo1CDE_FtsE 80.7 1.2 2.7E-05 49.7 3.1 27 81-107 28-54 (218)
411 TIGR02880 cbbX_cfxQ probable R 80.7 1.3 2.8E-05 51.9 3.3 28 85-112 60-87 (284)
412 cd03116 MobB Molybdenum is an 80.7 1.6 3.4E-05 46.4 3.7 28 84-111 2-29 (159)
413 COG2274 SunT ABC-type bacterio 80.7 0.9 1.9E-05 59.5 2.2 29 81-109 497-525 (709)
414 PRK11022 dppD dipeptide transp 80.7 1.2 2.6E-05 53.3 3.1 27 81-107 31-57 (326)
415 PF10186 Atg14: UV radiation r 80.6 29 0.00063 40.7 14.9 17 916-932 72-88 (302)
416 PF00769 ERM: Ezrin/radixin/mo 80.6 53 0.0011 37.6 16.1 32 947-978 80-111 (246)
417 PHA02530 pseT polynucleotide k 80.6 1.1 2.5E-05 52.7 2.9 24 84-107 3-26 (300)
418 PRK14959 DNA polymerase III su 80.6 2 4.3E-05 55.1 5.1 55 51-109 7-64 (624)
419 KOG4673 Transcription factor T 80.6 1.8E+02 0.0039 37.2 38.9 55 821-875 578-632 (961)
420 PF04102 SlyX: SlyX; InterPro 80.4 7.3 0.00016 35.2 7.3 51 926-976 2-52 (69)
421 COG1493 HprK Serine kinase of 80.4 1.2 2.6E-05 51.2 2.7 24 83-106 145-168 (308)
422 KOG0804 Cytoplasmic Zn-finger 80.4 79 0.0017 38.4 17.4 8 363-370 76-83 (493)
423 TIGR03608 L_ocin_972_ABC putat 80.4 1.3 2.8E-05 49.0 3.1 27 81-107 22-48 (206)
424 COG1123 ATPase components of v 80.3 1.2 2.7E-05 55.6 3.1 28 81-108 315-342 (539)
425 PLN02796 D-glycerate 3-kinase 80.3 1.3 2.7E-05 52.8 3.0 24 85-108 102-125 (347)
426 cd03229 ABC_Class3 This class 80.3 1.4 3E-05 47.7 3.2 27 81-107 24-50 (178)
427 PRK09087 hypothetical protein; 80.3 2.1 4.6E-05 48.3 4.8 24 82-105 43-66 (226)
428 COG1126 GlnQ ABC-type polar am 80.2 1.4 3E-05 48.5 3.0 22 81-102 26-47 (240)
429 cd03292 ABC_FtsE_transporter F 80.2 1.3 2.9E-05 49.3 3.1 27 81-107 25-51 (214)
430 cd03296 ABC_CysA_sulfate_impor 80.2 1.3 2.9E-05 50.3 3.2 27 81-107 26-52 (239)
431 TIGR02640 gas_vesic_GvpN gas v 80.2 2.4 5.3E-05 48.9 5.4 42 63-107 4-45 (262)
432 cd01124 KaiC KaiC is a circadi 80.1 1.5 3.2E-05 47.6 3.3 27 85-111 1-27 (187)
433 COG0419 SbcC ATPase involved i 80.1 2.1E+02 0.0045 39.5 24.6 16 452-467 38-54 (908)
434 COG2433 Uncharacterized conser 80.1 25 0.00055 44.1 13.8 30 940-969 479-508 (652)
435 PRK05439 pantothenate kinase; 80.0 2.9 6.2E-05 49.4 5.8 30 80-109 83-112 (311)
436 COG4619 ABC-type uncharacteriz 80.0 1.3 2.7E-05 46.6 2.6 24 82-105 28-51 (223)
437 cd01983 Fer4_NifH The Fer4_Nif 79.9 1.7 3.7E-05 41.0 3.4 25 86-110 2-26 (99)
438 cd02026 PRK Phosphoribulokinas 79.9 1.3 2.8E-05 51.5 3.0 22 86-107 2-23 (273)
439 smart00072 GuKc Guanylate kina 79.9 1.3 2.7E-05 48.3 2.8 23 85-107 4-26 (184)
440 TIGR00678 holB DNA polymerase 79.9 2.4 5.3E-05 46.2 5.0 36 74-109 4-40 (188)
441 PF12325 TMF_TATA_bd: TATA ele 79.9 25 0.00053 35.5 11.5 36 946-981 72-107 (120)
442 cd03258 ABC_MetN_methionine_tr 79.9 1.4 3E-05 49.9 3.2 27 81-107 29-55 (233)
443 PRK14963 DNA polymerase III su 79.9 2 4.3E-05 54.3 4.8 45 63-110 19-63 (504)
444 PRK10436 hypothetical protein; 79.8 1.2 2.7E-05 55.3 3.0 34 74-108 210-243 (462)
445 PRK14970 DNA polymerase III su 79.8 3 6.5E-05 50.8 6.2 57 51-109 8-65 (367)
446 PRK12608 transcription termina 79.8 1.8 3.9E-05 51.9 4.2 43 67-109 117-159 (380)
447 cd03235 ABC_Metallic_Cations A 79.7 1.3 2.8E-05 49.3 2.9 27 81-107 23-49 (213)
448 PRK00023 cmk cytidylate kinase 79.6 1.4 3.1E-05 49.6 3.1 26 83-108 4-29 (225)
449 PF11559 ADIP: Afadin- and alp 79.6 26 0.00057 36.8 12.5 83 903-985 55-148 (151)
450 KOG0243 Kinesin-like protein [ 79.4 1.3E+02 0.0028 40.8 20.7 20 240-259 99-118 (1041)
451 PLN02348 phosphoribulokinase 79.4 2.3 5E-05 51.3 4.9 28 81-108 47-74 (395)
452 PLN02318 phosphoribulokinase/u 79.4 2.2 4.7E-05 53.9 4.8 41 66-106 47-88 (656)
453 PRK05201 hslU ATP-dependent pr 79.4 3.7 8E-05 50.0 6.6 60 48-107 6-74 (443)
454 PRK14962 DNA polymerase III su 79.4 2.7 5.8E-05 52.7 5.7 54 52-109 6-62 (472)
455 PRK11176 lipid transporter ATP 79.4 1.2 2.6E-05 57.7 2.9 28 81-108 367-394 (582)
456 cd03223 ABCD_peroxisomal_ALDP 79.3 1.5 3.4E-05 46.8 3.2 27 81-107 25-51 (166)
457 KOG0243 Kinesin-like protein [ 79.3 84 0.0018 42.5 19.0 9 601-609 182-190 (1041)
458 PRK13341 recombination factor 79.3 2.4 5.1E-05 55.9 5.4 36 72-107 41-76 (725)
459 KOG2991 Splicing regulator [RN 79.2 1.1E+02 0.0025 34.2 27.2 12 908-919 218-229 (330)
460 cd03256 ABC_PhnC_transporter A 79.2 1.5 3.2E-05 49.9 3.1 27 81-107 25-51 (241)
461 KOG1962 B-cell receptor-associ 79.2 12 0.00026 41.3 9.8 60 928-987 151-210 (216)
462 TIGR03864 PQQ_ABC_ATP ABC tran 79.1 1.5 3.3E-05 49.7 3.2 27 81-107 25-51 (236)
463 cd03224 ABC_TM1139_LivF_branch 79.1 1.5 3.3E-05 49.1 3.2 26 81-106 24-49 (222)
464 PRK11124 artP arginine transpo 79.1 1.5 3.3E-05 49.9 3.2 26 81-106 26-51 (242)
465 PF14532 Sigma54_activ_2: Sigm 79.1 0.95 2E-05 46.8 1.4 25 81-105 19-43 (138)
466 PRK02496 adk adenylate kinase; 79.0 1.6 3.4E-05 47.5 3.1 22 86-107 4-25 (184)
467 KOG4302 Microtubule-associated 79.0 1.3E+02 0.0029 39.0 20.1 122 814-937 59-190 (660)
468 PRK12726 flagellar biosynthesi 79.0 4.4 9.5E-05 48.8 6.9 50 61-110 175-233 (407)
469 cd01672 TMPK Thymidine monopho 79.0 1.7 3.6E-05 47.5 3.4 24 86-109 3-26 (200)
470 PF13479 AAA_24: AAA domain 79.0 1.3 2.8E-05 49.5 2.5 22 82-103 2-23 (213)
471 PF13604 AAA_30: AAA domain; P 79.0 2.9 6.3E-05 46.1 5.2 38 72-110 8-45 (196)
472 PLN03188 kinesin-12 family pro 78.9 2.6E+02 0.0057 38.8 23.4 36 65-100 148-183 (1320)
473 KOG3354 Gluconate kinase [Carb 78.9 1.7 3.6E-05 45.1 2.9 25 84-108 13-37 (191)
474 TIGR02315 ABC_phnC phosphonate 78.9 1.5 3.3E-05 49.8 3.2 27 81-107 26-52 (243)
475 cd03268 ABC_BcrA_bacitracin_re 78.8 1.6 3.4E-05 48.4 3.2 27 81-107 24-50 (208)
476 PF06160 EzrA: Septation ring 78.8 2.1E+02 0.0046 37.0 30.1 13 907-919 201-213 (560)
477 PRK05642 DNA replication initi 78.8 3.4 7.4E-05 46.9 5.9 26 84-109 46-71 (234)
478 KOG4809 Rab6 GTPase-interactin 78.8 1.8E+02 0.0039 36.3 21.2 19 855-873 338-356 (654)
479 PRK03731 aroL shikimate kinase 78.8 1.7 3.6E-05 46.6 3.2 24 84-107 3-26 (171)
480 PRK07952 DNA replication prote 78.7 2.1 4.6E-05 48.7 4.2 28 83-110 99-126 (244)
481 KOG4364 Chromatin assembly fac 78.6 60 0.0013 41.1 16.3 9 1281-1289 654-662 (811)
482 cd03297 ABC_ModC_molybdenum_tr 78.6 1.6 3.4E-05 48.8 3.0 26 81-107 22-47 (214)
483 TIGR01184 ntrCD nitrate transp 78.6 1.6 3.5E-05 49.4 3.1 27 81-107 9-35 (230)
484 PF07106 TBPIP: Tat binding pr 78.6 22 0.00047 38.2 11.6 65 906-970 71-137 (169)
485 cd03230 ABC_DR_subfamily_A Thi 78.5 1.7 3.6E-05 46.8 3.1 26 81-106 24-49 (173)
486 TIGR00382 clpX endopeptidase C 78.4 3.6 7.8E-05 50.5 6.3 66 42-107 62-140 (413)
487 cd03266 ABC_NatA_sodium_export 78.4 1.6 3.6E-05 48.7 3.2 24 81-104 29-52 (218)
488 PRK13539 cytochrome c biogenes 78.4 1.7 3.6E-05 48.3 3.2 24 81-104 26-49 (207)
489 cd03219 ABC_Mj1267_LivG_branch 78.3 1.5 3.3E-05 49.6 2.9 24 81-104 24-47 (236)
490 COG2804 PulE Type II secretory 78.3 1.6 3.4E-05 53.8 3.1 22 86-107 261-282 (500)
491 PRK06526 transposase; Provisio 78.2 1.8 4E-05 49.7 3.5 30 82-111 97-126 (254)
492 TIGR01005 eps_transp_fam exopo 78.2 2.6E+02 0.0056 37.7 27.1 225 766-998 167-418 (754)
493 cd03226 ABC_cobalt_CbiO_domain 78.1 1.7 3.6E-05 48.2 3.0 24 81-104 24-47 (205)
494 TIGR00017 cmk cytidylate kinas 78.1 1.8 3.8E-05 48.6 3.3 23 85-107 4-26 (217)
495 cd03265 ABC_DrrA DrrA is the A 78.1 1.7 3.7E-05 48.7 3.2 24 81-104 24-47 (220)
496 PRK10908 cell division protein 78.1 1.7 3.7E-05 48.8 3.2 24 81-104 26-49 (222)
497 TIGR00635 ruvB Holliday juncti 78.1 3.3 7.1E-05 48.9 5.7 43 65-107 11-54 (305)
498 cd03269 ABC_putative_ATPase Th 78.1 1.7 3.7E-05 48.2 3.2 24 81-104 24-47 (210)
499 cd03262 ABC_HisP_GlnQ_permease 78.0 1.7 3.7E-05 48.3 3.2 24 81-104 24-47 (213)
500 TIGR00972 3a0107s01c2 phosphat 78.0 1.7 3.7E-05 49.7 3.2 24 81-104 25-48 (247)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=5.5e-228 Score=2103.12 Aligned_cols=1303 Identities=35% Similarity=0.536 Sum_probs=1014.4
Q ss_pred CCCCCCCCcHHHHHHHHHHhccCcceeecCCeeEEecCCCCCCCCCCHHHHHHhhccccCCCCchHHHHHHHHHHHHHhc
Q 000484 1 MTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINE 80 (1464)
Q Consensus 1 ~~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~ 80 (1464)
||.|+|||||+|||||++||.+++||||+|.||||||||..+| ||+.++|+.|++++..+++|||||||++||+.|...
T Consensus 71 Lt~LSyLNEpsVl~nL~kRY~n~~IYTYSGlvLIAvNPy~~L~-iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~ 149 (1463)
T COG5022 71 LTELSYLNEPAVLHNLEKRYNNGQIYTYSGLVLIAVNPYRDLG-IYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSE 149 (1463)
T ss_pred hhhhhccCcHHHHHHHHHHhhcCceeEEeeeEEEEecCcccCC-CccHHHHHHhccCccccCCchHHHHHHHHHHHHHhc
Confidence 7999999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCCCCCccHHHHHhhhchHHHhhcCCcccCCCCCCCccceEEEEEcCC
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKN 160 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~sn~ileaFGnAkT~~N~nSSRfgk~~~l~f~~~ 160 (1464)
++||||||||||||||||+||+||+|||++++.++....+||++|+++||||||||||||+|||||||||||++|.||.+
T Consensus 150 ~eNQtIiISGESGAGKTe~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~ 229 (1463)
T COG5022 150 KENQTIIISGESGAGKTENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDEN 229 (1463)
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCC
Confidence 99999999999999999999999999999998776667799999999999999999999999999999999999999999
Q ss_pred CCccceeEEEeecccccccccCCCCCcceeecccccCChh-HHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHhh
Q 000484 161 GRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCAAPPE-VREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRRA 239 (1464)
Q Consensus 161 g~i~ga~i~~ylLEksRv~~~~~~ErnfHiFYql~~~~~~-~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~~~~a 239 (1464)
|.|+||+|+||||||||||+|+.+|||||||||||+++++ .++.+++..|.+|.||++|+|..++|+||+++|..|++|
T Consensus 230 g~I~GA~I~~YLLEKSRVV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~A 309 (1463)
T COG5022 230 GEICGAKIETYLLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDA 309 (1463)
T ss_pred CceechhhhhhhhhhhhhccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999996544 455566689999999999999999999999999999999
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhcCeeEEecCCCCccccccccchhHHHHHHHhcCCCHHHHHHHHhhcccccCCceee
Q 000484 240 MDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEVIT 319 (1464)
Q Consensus 240 l~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~e~~~ 319 (1464)
|+++||+.++|.+||+|||||||||||+|..+++ +++.+.+. ..++.+|.|||||++.|.+||+++.|.+++|.|.
T Consensus 310 lktiGi~~eeq~~IF~iLAaILhiGNIef~~~r~-g~a~~~~~---~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~ 385 (1463)
T COG5022 310 LKTIGIDEEEQDQIFKILAAILHIGNIEFKEDRN-GAAIFSDN---SVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIV 385 (1463)
T ss_pred HHHhCCChHHHHHHHHHHHHHHhhcceeeeeccc-chhhcCCc---hHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEE
Confidence 9999999999999999999999999999998654 44444443 3699999999999999999999999999999999
Q ss_pred ccCChhHHhhhHHHHHHHHHHHHHHHHHHhhccccccCCCCCeEeeeeccCCcccCCCCChHHHHHHHhHHHHHHHHHHH
Q 000484 320 RTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQH 399 (1464)
Q Consensus 320 ~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNE~Lq~~f~~~ 399 (1464)
+|++..||..+||||||+||++||+|||++||.+|..++...+|||||||||||+|+.|||||||||||||||||+||+|
T Consensus 386 ~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h 465 (1463)
T COG5022 386 VPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQH 465 (1463)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999987777899999999999999999999999999999999999999
Q ss_pred HHHHhHHHhhhcCcccccccccChHHHHHHhhc-CCCcccccccccccCCCCchHHHHHHHHHHhc--CCCCccCCCCCC
Q 000484 400 VFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEK-KPGGIIALLDEACMFPKSTHETFAQKLYQTFK--SNKRFIKPKLSR 476 (1464)
Q Consensus 400 ~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~-~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~--~~~~~~~~~~~~ 476 (1464)
||++||++|.+|||+|++|+|.|||+||||||+ .|.|||++|||||.+|.|+|++|.+||++.+. +++.|.+||+..
T Consensus 466 ~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~ 545 (1463)
T COG5022 466 MFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRD 545 (1463)
T ss_pred HHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccccccCC
Confidence 999999999999999999999999999999997 25599999999999999999999999999886 467899999999
Q ss_pred CCeEEEeccceeeeechhhhhhcccccHHHHHHHHhhCCchhHhhcCCCCCCCccCCCCCccchHHHHHHHHHHHHHhcc
Q 000484 477 TSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNS 556 (1464)
Q Consensus 477 ~~F~I~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~ 556 (1464)
..|+|+||||+|+|+++||++||+|.+++++++|+.+|+|+||..||+...+ ..++++++|+|+.||.||.+||++|++
T Consensus 546 ~~FvvkHYAgDVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~-~~~K~~~pT~gs~~K~sl~~Lm~tl~s 624 (1463)
T COG5022 546 NKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEEN-IESKGRFPTLGSRFKESLNSLMSTLNS 624 (1463)
T ss_pred CceEEEeecccceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhhh-ccccCCCCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999995433 334468899999999999999999999
Q ss_pred CCCeEEEeccCCCCCCCCCCChhhHHHhhcccChhhHHHHHhhcCCCccChHHHHHhhhccCCCCCCC-----CCchHHH
Q 000484 557 TEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG-----NYDDKVA 631 (1464)
Q Consensus 557 t~~h~irCIkpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~~-----~~~~~~~ 631 (1464)
|+||||||||||..|.|+.||+.+|++|||||||+|+|||+|+|||+||+|+||+.||++|.|...+. ..|.+.+
T Consensus 625 TqphyIRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~ 704 (1463)
T COG5022 625 TQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNA 704 (1463)
T ss_pred cCCceeEeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999974321 2467999
Q ss_pred HHHHHHhcCCC--CceeccceeeccchhhHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 000484 632 CEKILDKMGLK--GYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILAC 709 (1464)
Q Consensus 632 ~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r~~~l~~~a~~IQ~~~R~~l~Rk~~~~~r~aai~iQ~~~Rg~laR 709 (1464)
|..||..+.++ .||+|+||||||+|+++.||.+|+..+..+++.||++|||++.|++|.+..+.+..+|...+|+..|
T Consensus 705 ~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~ 784 (1463)
T COG5022 705 VKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLR 784 (1463)
T ss_pred HHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 99999998765 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHhhhHHHHHHHHHHHHHHHHHhhHHHHhHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 710 KLYEQLRREAAALKIQKNFHSYTARTSYLTARSSAIQLQ-TGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSL 788 (1464)
Q Consensus 710 ~~~~~~r~~~AAi~IQ~~~R~~~~Rr~y~~lr~a~i~IQ-s~~Rg~laRk~~~~lr~~~aAi~IQ~~~R~~~~rr~~~~~ 788 (1464)
+.+..--...+++.+|+.||....|..|......++.+| ..+|....+.........++++.+|+.||.+..+++|..+
T Consensus 785 ~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L 864 (1463)
T COG5022 785 RLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLL 864 (1463)
T ss_pred hhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHh
Confidence 887666666799999999999999999999999999999 7777777777666667778999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 789 KKAAVITQCGWRRRVARRELRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQ 868 (1464)
Q Consensus 789 ~~a~~~iQs~~R~~~arkel~~lk~~a~e~~~l~~~~~~Le~~~~el~~~l~~e~~~~~~le~~k~~e~~~L~~~~~eLe 868 (1464)
.+..+.+|+.+|...|++++..++.+.+++..+......++.++.++...++........... +....++..+...+
T Consensus 865 ~k~~i~~~~~~r~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~~s~~~~~~~~k~---e~~a~lk~~l~~~d 941 (1463)
T COG5022 865 KKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKT---ELIARLKKLLNNID 941 (1463)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhccchhhhhhhHHHH---HHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999998888766642211111110 11112211111100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccccccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHH
Q 000484 869 LQVEEANFRILKEQEAARKAIEEAPPIVKETPVIV-HDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTEL 947 (1464)
Q Consensus 869 ~~lee~~~~l~~e~e~l~~~~ee~~~~~~e~~~l~-~~~~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l 947 (1464)
+++...++ ....++..+.....++++...+.+.-++..+....+... .
T Consensus 942 ---------------------------~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~----~ 990 (1463)
T COG5022 942 ---------------------------LEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNK----A 990 (1463)
T ss_pred ---------------------------ccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccc----H
Confidence 00000000 000122333333333333222222222222211111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHhhcCCCccccccCcchhhhccCCCCC-CCC-CCCcccC
Q 000484 948 VKKLEDTEEKVGQLQESMQRLEEKLCNSESE---NQVIRQQALAMSPTGKSLSARPKTLVIQRTPENG-NVQ-NGEMKVT 1022 (1464)
Q Consensus 948 ~~~l~~~e~e~~~L~~e~~~Leekl~~Le~e---n~~L~q~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~ 1022 (1464)
..++.....++.....+...+.++...++.. +..+....... +......+...+-..+... ... +...+..
T Consensus 991 ~~el~~~~~~l~~~~~~~~~l~~~~~~lk~~~~~~~~l~~~~~~~----~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1066 (1463)
T COG5022 991 NSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKII----SSESTELSILKPLQKLKGLLLLENNQLQARY 1066 (1463)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhh----ccchhhhhccCcccchhhhhhHHHHHhhhhH
Confidence 1122222222222222222222222222222 22222211100 0000000000000000000 000 0000000
Q ss_pred CccccccccCCCCCcccccccchhHHh---hhhhHHHHHhhc-cCCCCcCC-ccchHHH-HHHHHhhhcc-cchhhHHHH
Q 000484 1023 PDVTLAVTSAREPESEEKPQKSLNEKQ---QENQDLLIKCVS-QNLGFSRS-KPVAASV-IYKCLLHWRS-FEVERTTVF 1095 (1464)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~~~~e~~---~e~~~~l~~~~~-~~~~~~~~-kp~pA~i-lf~cl~~~~~-~~~e~~~ll 1095 (1464)
... ....+ .....+.+ .+....+.+.+. +++...+. -+.||.. .+....+|+. ...+...++
T Consensus 1067 ~~l----~~~r~-------~~~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~ 1135 (1463)
T COG5022 1067 KAL----KLRRE-------NSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFL 1135 (1463)
T ss_pred hhh----hhcCc-------ccchhHHHHHHHHhhhhhhhhhccchhhhhcccccchhhHHHHHHHHhhccchHHhhhhHH
Confidence 000 00000 00111111 122222333333 22333221 1224444 3444466765 445556667
Q ss_pred HHHHHHHHHHhhh---cCCccccchhhHHHHHHHHHHHHhhhhcCCCCCCccccccccchhhhcccccccCCCCCCCccc
Q 000484 1096 DRIIQTIASAIEV---QDNNDVLAYWLSNSSTLLLLLQHTLKASGAASLTPQRRRTTSASLFGRMSQGLRASPQSAGLSF 1172 (1464)
Q Consensus 1096 ~~ii~~I~~~v~~---~~d~~~layWLSN~~~Ll~~lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 1172 (1464)
...+..++.+... .+-.....||.+|...+++.-.-. ...+.+.. ..++ .+.+
T Consensus 1136 ~~~~~~le~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~--------------~d~~- 1191 (1463)
T COG5022 1136 SQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFA-------ALSEKRLY--QSAL--------------YDEK- 1191 (1463)
T ss_pred HHHHhhccchhccccchhccccccccccccccCCCCCchh-------hcchhhhh--Hhhh--------------hccc-
Confidence 7667666666553 222346789999999876311000 00000000 0000 0000
Q ss_pred ccCCCcccccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh-hcC-CCCcccccccCCCcchhhhhh
Q 000484 1173 LNGRGLGRLDDLRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKDISPLLGLC-IQA-PRTSRASLVKGRSQANAVAQQ 1250 (1464)
Q Consensus 1173 ~~~~~~~~~~~~~~v~~~~p~~~~~qqL~~~~~~iy~~l~~~i~~~l~~~L~~~-i~~-~~~~~~~~~~~~~~~~~~~~~ 1250 (1464)
+.. ..++ .-..+..+..+..++|..|.... ++.+.+... ++. .....+++. .++..+..
T Consensus 1192 -~~~---s~s~---------v~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~----~~~~~~~~ 1252 (1463)
T COG5022 1192 -SKL---SSSE---------VNDLKNELIALFSKIFSGWPRGD--KLKKLISEGWVPTEYSTSLKGFN----NLNKKFDT 1252 (1463)
T ss_pred -ccc---cHHH---------HHHHHHHHHHHHHhccccchhhh--hhhhhhhhccchhhhcccccccc----chhhcccC
Confidence 000 0011 22457788889999999998765 333333211 000 000011110 01112223
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCcccchhHHhhchhHHHHHHhhccc
Q 000484 1251 ALIAHWQSIVKSLNSYLKTMKVNYVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEQWCYDATE 1330 (1464)
Q Consensus 1251 ~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~ 1330 (1464)
+...+.+.++.+++++.+.++.+.+.+.+..-.++++.-++|+.+||.|..|..-..|+.|.++.+|.+.+++||+.++
T Consensus 1253 ~~~~~~~~ll~~~n~i~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~~~~~n~~~~~~w~~~~~- 1331 (1463)
T COG5022 1253 PASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEELDDWCREFE- 1331 (1463)
T ss_pred cccCcHHHHHHHHHHHHHHHHHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhcccccccchhhhHHHHhhc-
Confidence 3455678899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccchHHHhhHHHHHHHHHhhcCCCcCCHHHHHHhhCCCCCHHHHHHHHhcCccCCCCCCCCCHHHHHHHHhhhc
Q 000484 1331 EYAGSAWDELKHIRQAVGFLVINQKPKKTLNEITKELCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRVLMT 1406 (1464)
Q Consensus 1331 ~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~c~~Ln~~Ql~kiL~~Y~~d~~e~~~v~~~~i~~v~~~~~ 1406 (1464)
...+..+|++++||++.+++.++...+++++ .+.|.+|+|.|+.+|+.+|.|.++| .++|.++.++|.....
T Consensus 1332 --i~~~~~~l~~l~q~~k~~~~~~~dl~~~~~~-~~~~~~l~~~~~~~L~~~y~~~~~e-~~l~ke~~~~~~a~~~ 1403 (1463)
T COG5022 1332 --ISDVDEELEELIQAVKVLQLLKDDLNKLDEL-LDACYSLNPAEIQNLKSRYDPADKE-NNLPKEILKKIEALLI 1403 (1463)
T ss_pred --ccchHHHHHHHHhhhhhhhhhhCCHHHHHHH-HHHHHhcCHHHHHHHHHhhhhhccc-CCChHHHHHHHhhhhh
Confidence 5667789999999999999987777777666 7999999999999999999999998 5999999976655444
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=3e-192 Score=1806.24 Aligned_cols=706 Identities=38% Similarity=0.595 Sum_probs=658.3
Q ss_pred CCCCCCCCcHHHHHHHHHHhccCcceeecCCeeEEecCCCCCCCCCCHHHHHHhhcc-ccCCCCchHHHHHHHHHHHHHh
Q 000484 1 MTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGA-QFGELSPHVFAIADVAYRAMIN 79 (1464)
Q Consensus 1 ~~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~-~~~~~~PHifaiA~~Ay~~m~~ 79 (1464)
|+.|+|||||+|||+|+.||..+.||||+|++|||||||+++| +|++++++.|++. ..+++||||||||+.||++|..
T Consensus 101 l~~L~~lnE~~vL~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~ 179 (821)
T PTZ00014 101 IGLLPHTNIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLG-NTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHG 179 (821)
T ss_pred hhhCCCCCHHHHHHHHHHHHcCCCCeeeECCEEEEECCCCCCC-CCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999999997 9999999999985 5789999999999999999999
Q ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCCCCCccHHHHHhhhchHHHhhcCCcccCCCCCCCccceEEEEEcC
Q 000484 80 EGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDK 159 (1464)
Q Consensus 80 ~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~sn~ileaFGnAkT~~N~nSSRfgk~~~l~f~~ 159 (1464)
.++||||||||||||||||+||++|+|||.+++.. ...+|+++|+++||||||||||||+|||||||||||++|+||.
T Consensus 180 ~~~~QsIiiSGESGAGKTe~tK~im~yla~~~~~~--~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~ 257 (821)
T PTZ00014 180 VKKSQTIIVSGESGAGKTEATKQIMRYFASSKSGN--MDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGE 257 (821)
T ss_pred cCCCceEEEEcCCCCCchHHHHHHHHHHHHhccCC--CcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcC
Confidence 99999999999999999999999999999986532 2357999999999999999999999999999999999999999
Q ss_pred CCCccceeEEEeecccccccccCCCCCcceeeccccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHh
Q 000484 160 NGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRR 238 (1464)
Q Consensus 160 ~g~i~ga~i~~ylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~~~~ 238 (1464)
+|.|+||+|.+|||||||||+|++||||||||||||+ ++++++++|+|.++.+|+||++ +|..++++||+++|.+|+.
T Consensus 258 ~g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~-~~~~~~~~dD~~~f~~~~~ 336 (821)
T PTZ00014 258 EGGIRYGSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINP-KCLDVPGIDDVKDFEEVME 336 (821)
T ss_pred CCcEeeEEEEEEeccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCC-CCccCCCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999 7889999999999999999995 5889999999999999999
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHHHhcCeeEEecCC---CCccccccccchhHHHHHHHhcCCCHHHHHHHHhhcccccCC
Q 000484 239 AMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE---ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE 315 (1464)
Q Consensus 239 al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~ 315 (1464)
||++|||+++++.+||+|||||||||||+|.+... .+++.+.+. +...++.||+|||||+++|.++||++++.+++
T Consensus 337 A~~~lg~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~-~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~ 415 (821)
T PTZ00014 337 SFDSMGLSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDE-SLEVFNEACELLFLDYESLKKELTVKVTYAGN 415 (821)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccCC-CHHHHHHHHHHhCCCHHHHHHHhhceEEEeCC
Confidence 99999999999999999999999999999986432 345555443 34579999999999999999999999999999
Q ss_pred ceeeccCChhHHhhhHHHHHHHHHHHHHHHHHHhhccccccCCCCCeEeeeeccCCcccCCCCChHHHHHHHhHHHHHHH
Q 000484 316 EVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQH 395 (1464)
Q Consensus 316 e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNE~Lq~~ 395 (1464)
+.++++++++||..+||||||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||||||||||||||+
T Consensus 416 e~i~~~~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~ 495 (821)
T PTZ00014 416 QKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKN 495 (821)
T ss_pred eeEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEecccccccCcchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988766778999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHhhhcCcccccccccChHHHHHHhhcCCCcccccccccccCCCCchHHHHHHHHHHhcCCCCccCCCC-
Q 000484 396 FNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKPKL- 474 (1464)
Q Consensus 396 f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~~- 474 (1464)
|++|||+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|+|||++|++||++++++|++|.+|+.
T Consensus 496 F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~ 575 (821)
T PTZ00014 496 FVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAKVD 575 (821)
T ss_pred HHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCeEEEeccceeeeechhhhhhcccccHHHHHHHHhhCCchhHhhcCCCCCCCccCCCCCccchHHHHHHHHHHHHHh
Q 000484 475 SRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETL 554 (1464)
Q Consensus 475 ~~~~F~I~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l 554 (1464)
....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+......++..+.+||+++|+.||+.||++|
T Consensus 576 ~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~s~Fk~qL~~Lm~~L 655 (821)
T PTZ00014 576 SNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKGKLAKGQLIGSQFLNQLDSLMSLI 655 (821)
T ss_pred CCCceEEEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhcccccccccccCCCcHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999998654333344466899999999999999999
Q ss_pred ccCCCeEEEeccCCCCCCCCCCChhhHHHhhcccChhhHHHHHhhcCCCccChHHHHHhhhccCCCCCCC-CCchHHHHH
Q 000484 555 NSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG-NYDDKVACE 633 (1464)
Q Consensus 555 ~~t~~h~irCIkpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~~-~~~~~~~~~ 633 (1464)
++|+||||||||||+.|.|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|.+..... ..|+++.|+
T Consensus 656 ~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~ 735 (821)
T PTZ00014 656 NSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAE 735 (821)
T ss_pred hccCCeEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998875432 358899999
Q ss_pred HHHHhcCC--CCceeccceeeccchhhHHHHHHHHHhhh---hHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 000484 634 KILDKMGL--KGYQIGKTKVFLRAGQMAELDARRAEVLG---NAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILA 708 (1464)
Q Consensus 634 ~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r~~~l~---~~a~~IQ~~~R~~l~Rk~~~~~r~aai~iQ~~~Rg~la 708 (1464)
.||..+++ ++|++|+||||||++++..||.+|.+++. .+++.||++||||++|++|++.+.+++.||++||||++
T Consensus 736 ~il~~~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~ 815 (821)
T PTZ00014 736 KLLERSGLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLV 815 (821)
T ss_pred HHHHHcCCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999876 58999999999999999999998887764 57788888888888888888888788878888877777
Q ss_pred hhH
Q 000484 709 CKL 711 (1464)
Q Consensus 709 R~~ 711 (1464)
++.
T Consensus 816 ~~~ 818 (821)
T PTZ00014 816 IAE 818 (821)
T ss_pred Hhc
Confidence 653
No 3
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=9.2e-185 Score=1720.52 Aligned_cols=669 Identities=87% Similarity=1.338 Sum_probs=643.4
Q ss_pred CCCCCCCCcHHHHHHHHHHhccCcceeecCCeeEEecCCCCCCCCCCHHHHHHhhccccCCCCchHHHHHHHHHHHHHhc
Q 000484 1 MTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINE 80 (1464)
Q Consensus 1 ~~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~ 80 (1464)
|+.|++|||++|||+|+.||.++.||||+|+||||||||+++|++|++++|+.|+++..+++|||||+||++||++|.+.
T Consensus 6 l~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~ 85 (674)
T cd01384 6 MTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYRAMINE 85 (674)
T ss_pred HhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCCCCCccHHHHHhhhchHHHhhcCCcccCCCCCCCccceEEEEEcCC
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKN 160 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~sn~ileaFGnAkT~~N~nSSRfgk~~~l~f~~~ 160 (1464)
++||||||||||||||||++|++|+||+.+++..+....+|+++|+++||||||||||||++||||||||||++|+||.+
T Consensus 86 ~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~ 165 (674)
T cd01384 86 GKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDDY 165 (674)
T ss_pred CCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEEEECCC
Confidence 99999999999999999999999999999987655556789999999999999999999999999999999999999999
Q ss_pred CCccceeEEEeecccccccccCCCCCcceeecccccCChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHhhh
Q 000484 161 GRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCAAPPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRRAM 240 (1464)
Q Consensus 161 g~i~ga~i~~ylLEksRv~~~~~~ErnfHiFYql~~~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~~~~al 240 (1464)
|.|+||+|.+|||||||||+|++||||||||||||++++++++.|+|.++.+|+||++++|..++++||+++|.+++.||
T Consensus 166 g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~~~~~al 245 (674)
T cd01384 166 GRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAAPPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLATRRAM 245 (674)
T ss_pred CcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcCCHHHHHHcCCCChHhCccccCCCCccccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHhcCeeEEecCCCCccccccccchhHHHHHHHhcCCCHHHHHHHHhhcccccCCceeec
Q 000484 241 DIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEVITR 320 (1464)
Q Consensus 241 ~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~e~~~~ 320 (1464)
+.|||+++++.+||+|||||||||||+|.+..+.|++.+.+..+...++.||.||||++++|.++|+++++.++++.+++
T Consensus 246 ~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~ 325 (674)
T cd01384 246 DVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTPEEVITK 325 (674)
T ss_pred HHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEe
Confidence 99999999999999999999999999998765556666666555578999999999999999999999999999999999
Q ss_pred cCChhHHhhhHHHHHHHHHHHHHHHHHHhhccccccCCCCCeEeeeeccCCcccCCCCChHHHHHHHhHHHHHHHHHHHH
Q 000484 321 TLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHV 400 (1464)
Q Consensus 321 ~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNE~Lq~~f~~~~ 400 (1464)
++++++|..+||+|||+||++||+|||.+||.+|+++.....+||||||||||+|+.|||||||||||||+|||+|+++|
T Consensus 326 ~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~i 405 (674)
T cd01384 326 PLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHV 405 (674)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccCcCCHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887778999999999999999999999999999999999999999
Q ss_pred HHHhHHHhhhcCcccccccccChHHHHHHhhcCCCcccccccccccCCCCchHHHHHHHHHHhcCCCCccCCCCCCCCeE
Q 000484 401 FKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKPKLSRTSFT 480 (1464)
Q Consensus 401 f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~~~~~~F~ 480 (1464)
|+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|++||++|++||++.+++|++|.+|+..+..|+
T Consensus 406 f~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~~~~F~ 485 (674)
T cd01384 406 FKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPKLSRTAFT 485 (674)
T ss_pred HHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred EEeccceeeeechhhhhhcccccHHHHHHHHhhCCchhHhhcCCCCCCCccCCCCCccchHHHHHHHHHHHHHhccCCCe
Q 000484 481 ISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNSTEPH 560 (1464)
Q Consensus 481 I~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h 560 (1464)
|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+..+..+.+.++++||+++||.||+.||++|++|+||
T Consensus 486 I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~~~fk~~L~~L~~~L~~t~~h 565 (674)
T cd01384 486 IDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSKFSSIGSRFKQQLQSLMETLSTTEPH 565 (674)
T ss_pred EEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHhccCCe
Confidence 99999999999999999999999999999999999999999998766555555678999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCChhhHHHhhcccChhhHHHHHhhcCCCccChHHHHHhhhccCCCCCCCCCchHHHHHHHHHhcC
Q 000484 561 YIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNYDDKVACEKILDKMG 640 (1464)
Q Consensus 561 ~irCIkpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~il~~~~ 640 (1464)
||||||||+.++|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|++.......+++..|+.||..++
T Consensus 566 fIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~il~~~~ 645 (674)
T cd01384 566 YIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVLKGSSDDKAACKKILDKMG 645 (674)
T ss_pred EEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccccCCCcHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999876656688999999999999
Q ss_pred CCCceeccceeeccchhhHHHHHHHHHhh
Q 000484 641 LKGYQIGKTKVFLRAGQMAELDARRAEVL 669 (1464)
Q Consensus 641 ~~~~~iGkTkVFlr~~~~~~Le~~r~~~l 669 (1464)
.++|++|+||||||++++..||.+|.+.+
T Consensus 646 ~~~~~~GktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 646 LKGYQIGKTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred CCCEEecCeeEEEcCCHHHHHHHHHHhcC
Confidence 99999999999999999999999998753
No 4
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=5.5e-181 Score=1553.20 Aligned_cols=721 Identities=40% Similarity=0.700 Sum_probs=669.3
Q ss_pred CCCCCCCcHHHHHHHHHHhccCcceeecCCeeEEecCCCCCCCCCCHHHHHHhhccccCCCCchHHHHHHHHHHHHHhcC
Q 000484 2 TKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEG 81 (1464)
Q Consensus 2 ~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~ 81 (1464)
+-|+.++|++++.||+.||..+.||||+|+|||+||||+.++ ||++++|++|+|..+.+.|||+||||+.||+.|.+.+
T Consensus 14 VLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~-IYg~~ti~kYkgre~yE~~PHlfAiad~aYrslk~r~ 92 (1001)
T KOG0164|consen 14 VLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLN-IYGPETIEKYKGREFYERPPHLFAIADAAYRSLKRRS 92 (1001)
T ss_pred EeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcC-ccCHHHHHHhCCeeecccCchHHHhHHHHHHHHHhcc
Confidence 457889999999999999999999999999999999999996 9999999999999999999999999999999999999
Q ss_pred CCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCCC-CCccHHHHHhhhchHHHhhcCCcccCCCCCCCccceEEEEEcCC
Q 000484 82 KSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV-EGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKN 160 (1464)
Q Consensus 82 ~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~-~~~~i~~~il~sn~ileaFGnAkT~~N~nSSRfgk~~~l~f~~~ 160 (1464)
+||||+|||||||||||++|+||+|+|.+.+.+.. +...|.+.+|.|||||||||||||.||||||||||||.|.||.+
T Consensus 93 rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYMDInFDfK 172 (1001)
T KOG0164|consen 93 RDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYMDINFDFK 172 (1001)
T ss_pred CCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhcceeeecccc
Confidence 99999999999999999999999999999865442 23568889999999999999999999999999999999999999
Q ss_pred CCccceeEEEeecccccccccCCCCCcceeeccccc-CChhHHhhcCCC-CCCCCccccCCCccccCCCCcHHHHHHHHh
Q 000484 161 GRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLG-DPKSFHYLNQSNCYALDGVDDTEEYLATRR 238 (1464)
Q Consensus 161 g~i~ga~i~~ylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~l~L~-~~~~~~yl~~~~~~~~~~~~d~~~f~~~~~ 238 (1464)
|..+|+.|.+|||||||||.|.+|||||||||||+. +++.+..+|+|. ++..|+||++| |..+.+++|+.+|..++.
T Consensus 173 GdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~~dfk~V~~ 251 (1001)
T KOG0164|consen 173 GDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDASDFKAVQK 251 (1001)
T ss_pred CCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccHHHHHHHHH
Confidence 999999999999999999999999999999999999 788889999995 89999999998 888999999999999999
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHHHhcCeeEEecCCCCccccccccchhHHHHHHHhcCCCHHHHHHHHhhcccccCCcee
Q 000484 239 AMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEVI 318 (1464)
Q Consensus 239 al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~e~~ 318 (1464)
||.++||+++|+.++|+|+|||||||||+|.+++ |++.+.+. ..+..+|+||++.+++|+++||.|++.+++|.+
T Consensus 252 Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~e--d~~~~~~~---~~l~~~aell~v~~del~~aL~~Rtvaa~~e~v 326 (1001)
T KOG0164|consen 252 AMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNE--DSSGIVNG---AQLKYIAELLSVTGDELERALTSRTVAAGGEIV 326 (1001)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhccceEEeecC--cccccchh---HHHHHHHHHHcCCHHHHHHHHHHHHHHhccchh
Confidence 9999999999999999999999999999999854 44444443 379999999999999999999999999999999
Q ss_pred eccCChhHHhhhHHHHHHHHHHHHHHHHHHhhccccccC-----CCCCeEeeeeccCCcccCCCCChHHHHHHHhHHHHH
Q 000484 319 TRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQD-----PNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQ 393 (1464)
Q Consensus 319 ~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~-----~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNE~Lq 393 (1464)
.+++++.||..+||||||++|+|||+|||.+||+++... ......||||||||||+|+.||||||||||+|||||
T Consensus 327 ~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcINYCNEKLQ 406 (1001)
T KOG0164|consen 327 LKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCINYCNEKLQ 406 (1001)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999542 123589999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHhhhcCcccccccccChHHHHHHhhcCCCcccccccccccCCC-CchHHHHHHHHHHhcCCCCccCC
Q 000484 394 QHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPK-STHETFAQKLYQTFKSNKRFIKP 472 (1464)
Q Consensus 394 ~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~~~Gil~lLdee~~~~~-~~d~~~~~kl~~~~~~~~~~~~~ 472 (1464)
|.|++-+++.|||||.+|||+|..|+|.+|.-++||+|.+..|||++|||||+.|+ -||.+|+++|.+.+++|++|...
T Consensus 407 QlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~H~Hy~sr 486 (1001)
T KOG0164|consen 407 QLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKKHPHYTSR 486 (1001)
T ss_pred HHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhhCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999997 69999999999999999999643
Q ss_pred C-------CCCCCeEEEeccceeeeechhhhhhcccccHHHHHHHHhhCCchhHhhcCCCCCCCcc-CCCCCccchHHHH
Q 000484 473 K-------LSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESS-KSSKFSSIGSRFK 544 (1464)
Q Consensus 473 ~-------~~~~~F~I~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~-~~~~~~tv~~~f~ 544 (1464)
+ .+..+|.|.||||+|+|++.||++||+|.+..|+-.+|..|+++++++||+....... ...+++|+|++|+
T Consensus 487 ~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~~~~~tkRP~Tagt~Fk 566 (1001)
T KOG0164|consen 487 KLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPDIAEVTKRPPTAGTLFK 566 (1001)
T ss_pred hccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChhHHhhhcCCCcHHHHHH
Confidence 2 2347899999999999999999999999999999999999999999999996543222 2236789999999
Q ss_pred HHHHHHHHHhccCCCeEEEeccCCCCCCCCCCChhhHHHhhcccChhhHHHHHhhcCCCccChHHHHHhhhccCCCCCCC
Q 000484 545 LQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG 624 (1464)
Q Consensus 545 ~~l~~L~~~l~~t~~h~irCIkpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~~ 624 (1464)
.|+..||+.|.+-+|+||||||||+.|.|+.||...|.+|.+|+|+||.+|++++||.+|.+|+.|+.||+++++..|..
T Consensus 567 ~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL~RYKmi~~~TWPn 646 (1001)
T KOG0164|consen 567 NSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFLLRYKMICESTWPN 646 (1001)
T ss_pred HHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHhhCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876532
Q ss_pred --CCchHHHHHHHHHhcCC-CCceeccceeeccchh-hHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000484 625 --NYDDKVACEKILDKMGL-KGYQIGKTKVFLRAGQ-MAELDARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAIVLQ 700 (1464)
Q Consensus 625 --~~~~~~~~~~il~~~~~-~~~~iGkTkVFlr~~~-~~~Le~~r~~~l~~~a~~IQ~~~R~~l~Rk~~~~~r~aai~iQ 700 (1464)
..++++.|..+++..+. +++.+|+||||+|.+. +-.||..|.+++...++.||+.||||++|.+|++++++++.|+
T Consensus 647 ~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~ 726 (1001)
T KOG0164|consen 647 WRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLARQRYRRMKASATIIR 726 (1001)
T ss_pred CCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24578999999999886 5899999999999975 6899999999999999999999999999999999999999988
Q ss_pred hhhhhhhhhhHhHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q 000484 701 SYWRGILACKLYEQLRREAAALKIQKNFHSYTARTSYLT 739 (1464)
Q Consensus 701 ~~~Rg~laR~~~~~~r~~~AAi~IQ~~~R~~~~Rr~y~~ 739 (1464)
|||.+. ...++..||+.+||+..++.|.+
T Consensus 727 -wyR~~K---------~ks~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 727 -WYRRYK---------LKSYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred -HHHHHH---------HHHHHHHHHHHHHhhhhccccCC
Confidence 888443 22567789999999999998864
No 5
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=6.4e-180 Score=1646.36 Aligned_cols=745 Identities=64% Similarity=1.006 Sum_probs=716.7
Q ss_pred CCCCCCCCcHHHHHHHHHHhccCcceeecCCeeEEecCCCCCCCCCCHHHHHHhhccccCCCCchHHHHHHHHHHHHHhc
Q 000484 1 MTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINE 80 (1464)
Q Consensus 1 ~~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~ 80 (1464)
||.|+|||||+||+||+.||..+.||||+|++|||||||+++|++|++++|..|+ ...+++.||+||||+.||+.|...
T Consensus 13 lt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~favA~~ay~~m~~~ 91 (862)
T KOG0160|consen 13 LTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAVAEEAYRDMTPD 91 (862)
T ss_pred cccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhHHHHHHHHhhhc
Confidence 7899999999999999999999999999999999999999999999999999999 889999999999999999999999
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCCCCCccHHHHHhhhchHHHhhcCCcccCCCCCCCccceEEEEEcCC
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKN 160 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~sn~ileaFGnAkT~~N~nSSRfgk~~~l~f~~~ 160 (1464)
+.||+||||||||||||+++|++|+||++++++ ..+.+||++|+++||||||||||||++||||||||||++|+||.+
T Consensus 92 ~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~--~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~iei~Fd~~ 169 (862)
T KOG0160|consen 92 GVNQSIIVSGESGAGKTETAKYLMEYLASVGGS--VEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKVIEITFDQQ 169 (862)
T ss_pred cCCceeeeeCCCCCchhHHHHHHHHHHHHHhcc--chhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhHHHHhhhhh
Confidence 999999999999999999999999999999876 445799999999999999999999999999999999999999999
Q ss_pred CCccceeEEEeecccccccccCCCCCcceeecccccCChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHhhh
Q 000484 161 GRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCAAPPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRRAM 240 (1464)
Q Consensus 161 g~i~ga~i~~ylLEksRv~~~~~~ErnfHiFYql~~~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~~~~al 240 (1464)
|+|+||.|+||||||||||.++++|||||||||+|++.++++++|+|+++..|+|++|++|..++++||+.+|..++.||
T Consensus 170 ~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~e~~~t~~A~ 249 (862)
T KOG0160|consen 170 GRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAPEELEKLKLGTLRRFSYLNQSACVLISGVSDAEEFLSTTEAM 249 (862)
T ss_pred cccccceeeeEEeecceeeecCccccchHHHHHHhcCCchhhhccCcCccccceecccccchhhcccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999954499999999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHhcCeeEEecCCCCccccccccchhHHHHHHHhcCCCHHHHHHHHhhcccccCCceeec
Q 000484 241 DIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEVITR 320 (1464)
Q Consensus 241 ~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~e~~~~ 320 (1464)
..+||+.++|..||++||||||||||+|..+.+.+++...++ ++..+|.|||++.+.|..+|+.|.+.++++.|++
T Consensus 250 ~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~----~~~~~a~Llg~~~~~l~~~L~~r~i~~~~e~i~k 325 (862)
T KOG0160|consen 250 LFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD----HLWTAAELLGCDEEALEQWLSKRKILTARESIVK 325 (862)
T ss_pred HHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch----HHHHHHHHhCCCHHHHHHHHHHHHhhcccceeec
Confidence 999999999999999999999999999998776555555543 7899999999999999999999999999999999
Q ss_pred cCChhHHhhhHHHHHHHHHHHHHHHHHHhhcccccc-CCCCCeEeeeeccCCcccCCCCChHHHHHHHhHHHHHHHHHHH
Q 000484 321 TLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQ-DPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQH 399 (1464)
Q Consensus 321 ~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~-~~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNE~Lq~~f~~~ 399 (1464)
+++..+|...||++||.||++||+|+|++||.+|+. ++....+||||||||||.|+.|||||||||||||||||+||+|
T Consensus 326 ~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkLqq~fnqH 405 (862)
T KOG0160|consen 326 PLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKLQQQFNQH 405 (862)
T ss_pred ccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHhhHHHHHH
Confidence 999999999999999999999999999999999987 4556899999999999999999999999999999999999999
Q ss_pred HHHHhHHHhhhcCcccccccccChHHHHHHhhcCCCcccccccccccCCCCchHHHHHHHHHHhcCCCCccCCCCCCCCe
Q 000484 400 VFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKPKLSRTSF 479 (1464)
Q Consensus 400 ~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~~~~~~F 479 (1464)
||+.||++|.+|||+|+.|+|.||++|+++|++ |.|+++||||+|++|.++|++|..||+..+.+|+.|.+|+.++..|
T Consensus 406 vfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f~kpr~~~~~f 484 (862)
T KOG0160|consen 406 VFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRFTKPRLSRTDF 484 (862)
T ss_pred HHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCccCCCCCCcCCc
Confidence 999999999999999999999999999999998 8899999999999999999999999999999999999999999999
Q ss_pred EEEeccceeeeechhhhhhcccccHHHHHHHHhhCCchhHhhcCCCCCCCccCCCCCccchHHHHHHHHHHHHHhccCCC
Q 000484 480 TISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNSTEP 559 (1464)
Q Consensus 480 ~I~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~ 559 (1464)
+|.||||+|+|++.||++||||.|++++.+++..|+++|+..+|++...++.+.++++||+++|+.+|..||.+|++|+|
T Consensus 485 ~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~tv~s~fk~~l~~Lm~~l~~t~p 564 (862)
T KOG0160|consen 485 RVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSSAKSKRSTVGSQFKLQLISLMETLNSTPP 564 (862)
T ss_pred ccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchhhhhhcccHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999976666555668899999999999999999999999
Q ss_pred eEEEeccCCCCCCCCCCChhhHHHhhcccChhhHHHHHhhcCCCccChHHHHHhhhccCCCCCCCCCchHHHHHHHHHhc
Q 000484 560 HYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNYDDKVACEKILDKM 639 (1464)
Q Consensus 560 h~irCIkpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~il~~~ 639 (1464)
|||||||||+.+.|+.|+..+|++|||+|||||+|||+++|||.|++|.||+.||++|+| ... ..|++..|+.||+..
T Consensus 565 hyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~~~-~~~~~~~~~~il~~~ 642 (862)
T KOG0160|consen 565 HYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-NDS-ASDDLSLCKVILEKL 642 (862)
T ss_pred CCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-chh-cccchHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999 333 346699999999999
Q ss_pred CCCCceeccceeeccchhhHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHhHHHhhhH
Q 000484 640 GLKGYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKLYEQLRREA 719 (1464)
Q Consensus 640 ~~~~~~iGkTkVFlr~~~~~~Le~~r~~~l~~~a~~IQ~~~R~~l~Rk~~~~~r~aai~iQ~~~Rg~laR~~~~~~r~~~ 719 (1464)
+.+.||+|+||||+|+|+++.||.+|..++.++++.||+.+|+|+.|++|..+|++++.||+.+||+++|+ ..+ +..
T Consensus 643 ~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~ 719 (862)
T KOG0160|consen 643 GLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REA 719 (862)
T ss_pred chhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 334 678
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHhhHHHHH
Q 000484 720 AALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARN 758 (1464)
Q Consensus 720 AAi~IQ~~~R~~~~Rr~y~~lr~a~i~IQs~~Rg~laRk 758 (1464)
||+.||+.||+|..|++|..++.+++.+|+.+||+++|+
T Consensus 720 aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 720 AAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999987
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=3.1e-180 Score=1690.28 Aligned_cols=660 Identities=53% Similarity=0.867 Sum_probs=621.3
Q ss_pred CCCCCCCCcHHHHHHHHHHhccCcceeecCCeeEEecCCCCCCCCCCHHHHHHhhccccCCCCchHHHHHHHHHHHHHhc
Q 000484 1 MTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINE 80 (1464)
Q Consensus 1 ~~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~ 80 (1464)
|+.|++|||++|||+|+.||..+.||||+|+||||||||+++| +|++++++.|+++..+++|||||+||++||++|.++
T Consensus 5 l~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~ 83 (691)
T cd01380 5 LTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLP-IYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQMTRD 83 (691)
T ss_pred hhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCC-cCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999999999999999998 799999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCC--CCCccHHHHHhhhchHHHhhcCCcccCCCCCCCccceEEEEEc
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG--VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFD 158 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~--~~~~~i~~~il~sn~ileaFGnAkT~~N~nSSRfgk~~~l~f~ 158 (1464)
++||||||||||||||||++|+||+|||.+++... ....+|+++|+++||||||||||||++||||||||||++|+||
T Consensus 84 ~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~ 163 (691)
T cd01380 84 EKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQILFD 163 (691)
T ss_pred CCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEEEEEC
Confidence 99999999999999999999999999999986532 2246899999999999999999999999999999999999999
Q ss_pred CCCCccceeEEEeecccccccccCCCCCcceeeccccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHH
Q 000484 159 KNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATR 237 (1464)
Q Consensus 159 ~~g~i~ga~i~~ylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~~~ 237 (1464)
.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|..|+
T Consensus 164 ~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f~~~~ 243 (691)
T cd01380 164 KRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDFNATV 243 (691)
T ss_pred CCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999 68899999999999999999999999999999999999999
Q ss_pred hhhhhcCCCHHHHHHHHHHHHHHHHhcCeeEEecCCCCccccccccchhHHHHHHHhcCCCHHHHHHHHhhcccccCCce
Q 000484 238 RAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEV 317 (1464)
Q Consensus 238 ~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~e~ 317 (1464)
.||+.|||+++++.+||+|||||||||||+|.+.++ +.+.+.. +...++.||+||||++++|.++|+++++.+++|.
T Consensus 244 ~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~-~~~~~~~--~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~ 320 (691)
T cd01380 244 QALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRN-DSSSISP--KDENLQIACELLGVDASDLRKWLVKRQIVTRSEK 320 (691)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCC-ccceecC--ChHHHHHHHHHhCCCHHHHHHHHHhCEEEECCee
Confidence 999999999999999999999999999999987543 3322221 2347999999999999999999999999999999
Q ss_pred eeccCChhHHhhhHHHHHHHHHHHHHHHHHHhhccccccC---CCCCeEeeeeccCCcccCCCCChHHHHHHHhHHHHHH
Q 000484 318 ITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQD---PNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQ 394 (1464)
Q Consensus 318 ~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~---~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNE~Lq~ 394 (1464)
+++++++++|.++||+|||+||++||+|||++||.+|.++ .....+||||||||||+|+.|||||||||||||+||+
T Consensus 321 i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~ 400 (691)
T cd01380 321 IVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQ 400 (691)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhHHHHH
Confidence 9999999999999999999999999999999999999876 4567899999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHhhhcCcccccccccChHHHHHHhhcCCCcccccccccccCCCCchHHHHHHHHHHhc--CCCCccCC
Q 000484 395 HFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFK--SNKRFIKP 472 (1464)
Q Consensus 395 ~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~--~~~~~~~~ 472 (1464)
+|++|+|+.||++|.+|||+|++|+|.||++|||||+++ .|||++|||||++|+|||++|++||++.++ +|+.|.+|
T Consensus 401 ~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~-~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~ 479 (691)
T cd01380 401 QFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESK-LGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPHFEKP 479 (691)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhCC-CchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCCccCC
Confidence 999999999999999999999999999999999999975 699999999999999999999999999998 89999999
Q ss_pred CCCCCCeEEEeccceeeeechhhhhhcccccHHHHHHHHhhCCchhHhhcCCCCCCCc-----------------cCCCC
Q 000484 473 KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES-----------------SKSSK 535 (1464)
Q Consensus 473 ~~~~~~F~I~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-----------------~~~~~ 535 (1464)
+.....|+|+||||+|+|+++||++||+|.++++++++|+.|+++||+.||+.....+ .+..+
T Consensus 480 ~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (691)
T cd01380 480 RFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPKRAKQH 559 (691)
T ss_pred CCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccccccccccccccccccccccccC
Confidence 9888999999999999999999999999999999999999999999999997532110 01125
Q ss_pred CccchHHHHHHHHHHHHHhccCCCeEEEeccCCCCCCCCCCChhhHHHhhcccChhhHHHHHhhcCCCccChHHHHHhhh
Q 000484 536 FSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFG 615 (1464)
Q Consensus 536 ~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~ 615 (1464)
.+||+++|+.||+.||++|++|+||||||||||+.++|+.||.+.|++||||+||||+|||+++|||+|++|++|+.||+
T Consensus 560 ~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~ry~ 639 (691)
T cd01380 560 KPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFAQRYR 639 (691)
T ss_pred CCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCchHHHHHHHHHhcCC--CCceeccceeeccchhhHHHHHHH
Q 000484 616 VLAPDVLDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 665 (1464)
Q Consensus 616 ~L~~~~~~~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 665 (1464)
+|+|.......|++..|+.||..+.. ++|++|+||||||++++..||.+|
T Consensus 640 ~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 640 VLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 99998664456889999999999864 589999999999999999999875
No 7
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=7.2e-180 Score=1678.84 Aligned_cols=657 Identities=46% Similarity=0.769 Sum_probs=620.9
Q ss_pred CCCCCCCCcHHHHHHHHHHhccCcceeecCCeeEEecCCCCCCCCCCHHHHHHhhccccCCCCchHHHHHHHHHHHHHhc
Q 000484 1 MTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINE 80 (1464)
Q Consensus 1 ~~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~ 80 (1464)
|+.|++|||++|||+|+.||..+.||||+|++|||||||+++| +|++++++.|+++..+++|||||+||++||++|.++
T Consensus 5 l~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~ 83 (671)
T cd01381 5 MITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILP-IYTADEIKLYKNKSIGELPPHIFAISDNAYTNMQRE 83 (671)
T ss_pred hhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCC-CCCHHHHHHHhcCCccccCCCHHHHHHHHHHHHHHc
Confidence 7899999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCCCCCccHHHHHhhhchHHHhhcCCcccCCCCCCCccceEEEEEcCC
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKN 160 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~sn~ileaFGnAkT~~N~nSSRfgk~~~l~f~~~ 160 (1464)
++||||||||||||||||++|++|+|||.+++.. ..++++|++|||||||||||||++||||||||||++|+||.+
T Consensus 84 ~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~~ 159 (671)
T cd01381 84 KKNQCIIISGESGAGKTESTKLILQYLAAISGKH----SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKR 159 (671)
T ss_pred CCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCC
Confidence 9999999999999999999999999999997542 469999999999999999999999999999999999999999
Q ss_pred CCccceeEEEeecccccccccCCCCCcceeeccccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHhh
Q 000484 161 GRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRRA 239 (1464)
Q Consensus 161 g~i~ga~i~~ylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~~~~a 239 (1464)
|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|..++.|
T Consensus 160 g~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~a 239 (671)
T cd01381 160 GAIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFADIRSA 239 (671)
T ss_pred CcEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 7889999999999999999999999999999999999999999
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhcCeeEEecCC--CCccccccccchhHHHHHHHhcCCCHHHHHHHHhhcccccCCce
Q 000484 240 MDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE--ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEV 317 (1464)
Q Consensus 240 l~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~e~ 317 (1464)
|+.|||+++++.+||+|||||||||||+|.+.+. .+.+.+.+. ..++.||.||||++++|.++||++++.++++.
T Consensus 240 l~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~---~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~ 316 (671)
T cd01381 240 MKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDT---PNLQRVAQLLGVPIQDLMDALTSRTIFTRGET 316 (671)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCCh---HHHHHHHHHhCCCHHHHhhhhceEEEEeCCce
Confidence 9999999999999999999999999999987532 345555543 47999999999999999999999999999999
Q ss_pred eeccCChhHHhhhHHHHHHHHHHHHHHHHHHhhccccccC-CCCCeEeeeeccCCcccCCCCChHHHHHHHhHHHHHHHH
Q 000484 318 ITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQD-PNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHF 396 (1464)
Q Consensus 318 ~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNE~Lq~~f 396 (1464)
+++++++++|..+||||||+||++||+|||.+||.+|..+ .....+||||||||||+|+.||||||||||||||||++|
T Consensus 317 i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f 396 (671)
T cd01381 317 VVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENLQQFF 396 (671)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999765 456789999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHhhhcCcccccccccChHHHHHHhhcCCCcccccccccccCCCCchHHHHHHHHHHhcCCCCccCCCC-C
Q 000484 397 NQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKPKL-S 475 (1464)
Q Consensus 397 ~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~~-~ 475 (1464)
++|||+.||++|.+|||+|.+|+|.||++|||||+++|.|||++|||||++|+|+|++|++|+++.+++|++|.+|+. .
T Consensus 397 ~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~~ 476 (671)
T cd01381 397 VQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKPKSTQ 476 (671)
T ss_pred HHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998865 4
Q ss_pred CCCeEEEeccceeeeechhhhhhcccccHHHHHHHHhhCCchhHhhcCCCCCCCc-cCCCCCccchHHHHHHHHHHHHHh
Q 000484 476 RTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES-SKSSKFSSIGSRFKLQLQSLMETL 554 (1464)
Q Consensus 476 ~~~F~I~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-~~~~~~~tv~~~f~~~l~~L~~~l 554 (1464)
...|+|+||||+|+|+++||++||+|.++++++++|+.|+|++|+.||+.....+ ....+.+||+++|+.||+.||++|
T Consensus 477 ~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~k~~tv~~~fk~qL~~L~~~L 556 (671)
T cd01381 477 ETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAETRKKKPTLSSQFRRSLDLLMRTL 556 (671)
T ss_pred CCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccccccccccCCcHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999999999998754221 223366899999999999999999
Q ss_pred ccCCCeEEEeccCCCCCCCCCCChhhHHHhhcccChhhHHHHHhhcCCCccChHHHHHhhhccCCCCCCC--CCchHHHH
Q 000484 555 NSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG--NYDDKVAC 632 (1464)
Q Consensus 555 ~~t~~h~irCIkpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~~--~~~~~~~~ 632 (1464)
++|+||||||||||+.++|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++..... ..+.+..|
T Consensus 557 ~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~~~~~ 636 (671)
T cd01381 557 SSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQDCLAGLA 636 (671)
T ss_pred hcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccccccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999875432 34678899
Q ss_pred HHHHHhcCC--CCceeccceeeccchhhHHHHHHH
Q 000484 633 EKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 665 (1464)
Q Consensus 633 ~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 665 (1464)
+.|++.+.+ ++|++|+||||||++++..||..|
T Consensus 637 ~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 637 QRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 999998754 589999999999999999999865
No 8
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=1.6e-179 Score=1684.16 Aligned_cols=660 Identities=46% Similarity=0.787 Sum_probs=619.6
Q ss_pred CCCCCCCCcHHHHHHHHHHhccCcceeecCCeeEEecCCCCCCCCCCHHHHHHhhccccCCCCchHHHHHHHHHHHHHhc
Q 000484 1 MTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINE 80 (1464)
Q Consensus 1 ~~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~ 80 (1464)
|+.|++|||++||++|+.||..+.||||+|+||||||||+++| +|++++++.|+++..+++|||||+||++||++|...
T Consensus 10 l~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHiyaiA~~Ay~~m~~~ 88 (693)
T cd01377 10 MAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLP-IYTEEVVEMYRGKKREEMPPHIFAIADNAYRSMLQD 88 (693)
T ss_pred hhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCC------CCCccHHHHHhhhchHHHhhcCCcccCCCCCCCccceEE
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG------VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 154 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~------~~~~~i~~~il~sn~ileaFGnAkT~~N~nSSRfgk~~~ 154 (1464)
++||||||||||||||||++|+||+||+.+++... .....|+++|+++||||||||||||++||||||||||++
T Consensus 89 ~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~ 168 (693)
T cd01377 89 RENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSSRFGKFIR 168 (693)
T ss_pred CCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCccccceeEE
Confidence 99999999999999999999999999999986532 123579999999999999999999999999999999999
Q ss_pred EEEcCCCCccceeEEEeecccccccccCCCCCcceeeccccc-CChhHHhhcCCCCC-CCCccccCCCccccCCCCcHHH
Q 000484 155 LQFDKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDP-KSFHYLNQSNCYALDGVDDTEE 232 (1464)
Q Consensus 155 l~f~~~g~i~ga~i~~ylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~-~~~~yl~~~~~~~~~~~~d~~~ 232 (1464)
|+||.+|+|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++ .+|+||++++| .++++||+++
T Consensus 169 l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~-~~~~~~d~~~ 247 (693)
T cd01377 169 IHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGEL-TIPGVDDAEE 247 (693)
T ss_pred EEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCc-cCCCCcHHHH
Confidence 999999999999999999999999999999999999999999 78899999999876 99999999876 4789999999
Q ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHHHhcCeeEEecCCCCccccccccchhHHHHHHHhcCCCHHHHHHHHhhcccc
Q 000484 233 YLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMV 312 (1464)
Q Consensus 233 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~ 312 (1464)
|.+++.||+.|||+++++.+||+|||||||||||+|.+..+.+.+.+.+. ..+..||.||||++++|.++||++++.
T Consensus 248 f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~l~~~~~~ 324 (693)
T cd01377 248 FKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGT---EEADKAAHLLGVNSADLLKALLHPRIK 324 (693)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCCh---HHHHHHHHHhCCCHHHHHHHhcceEEE
Confidence 99999999999999999999999999999999999998644555555543 479999999999999999999999999
Q ss_pred cCCceeeccCChhHHhhhHHHHHHHHHHHHHHHHHHhhccccccCCCCCeEeeeeccCCcccCCCCChHHHHHHHhHHHH
Q 000484 313 TPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKL 392 (1464)
Q Consensus 313 ~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNE~L 392 (1464)
++++.+++|+++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||||||||||+|
T Consensus 325 ~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkL 404 (693)
T cd01377 325 VGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIFDFNSFEQLCINYTNEKL 404 (693)
T ss_pred ECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEecccccccCCCCHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999998877789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHhhhcCccccccccc-ChHHHHHHhhcCCCcccccccccccCCCCchHHHHHHHHHHhcCCCCc--
Q 000484 393 QQHFNQHVFKMEQEEYTKEEINWSYIEFV-DNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRF-- 469 (1464)
Q Consensus 393 q~~f~~~~f~~eq~~y~~EgI~~~~i~~~-dn~~~l~li~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~-- 469 (1464)
|++|++|||+.||++|.+|||+|+.|+|. ||++|||||+++|.|||++|||||++|+|||++|++||++.++++++|
T Consensus 405 Q~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~~~~~~~~ 484 (693)
T cd01377 405 QQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHLGKSKFKK 484 (693)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhcCCCcccc
Confidence 99999999999999999999999999994 999999999999999999999999999999999999999999999887
Q ss_pred cCCCCCCCCeEEEeccceeeeechhhhhhcccccHHHHHHHHhhCCchhHhhcCCCCCCCc----------cCCCCCccc
Q 000484 470 IKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEES----------SKSSKFSSI 539 (1464)
Q Consensus 470 ~~~~~~~~~F~I~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~----------~~~~~~~tv 539 (1464)
.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+...... .+.++++||
T Consensus 485 ~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~tv 564 (693)
T cd01377 485 PKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGDGGGGGGKKKKGGSFRTV 564 (693)
T ss_pred cCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccccccccCCCCcCCccccH
Confidence 4455567899999999999999999999999999999999999999999999998542211 112245899
Q ss_pred hHHHHHHHHHHHHHhccCCCeEEEeccCCCCCCCCCCChhhHHHhhcccChhhHHHHHhhcCCCccChHHHHHhhhccCC
Q 000484 540 GSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAP 619 (1464)
Q Consensus 540 ~~~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~ 619 (1464)
+++|+.||+.||++|++|+||||||||||+.++|+.||.+.|++||||+||||+|||+++|||+|++|++|++||++|+|
T Consensus 565 ~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~rY~~L~~ 644 (693)
T cd01377 565 SQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQRYEILAP 644 (693)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC-CCCCchHHHHHHHHHhcCC--CCceeccceeeccchhhHHHHHHH
Q 000484 620 DVL-DGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 665 (1464)
Q Consensus 620 ~~~-~~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 665 (1464)
..+ ....|.++.|+.||..+++ ++|++|+||||||++++..||.+|
T Consensus 645 ~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 645 NAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred ccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 764 2345889999999998876 489999999999999999999875
No 9
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=2.1e-178 Score=1669.41 Aligned_cols=658 Identities=45% Similarity=0.770 Sum_probs=622.0
Q ss_pred CCCCCCCCcHHHHHHHHHHhccCcceeecCCeeEEecCCCCCCCCCCHHHHHHhhccccCCCCchHHHHHHHHHHHHHhc
Q 000484 1 MTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINE 80 (1464)
Q Consensus 1 ~~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~ 80 (1464)
|+.|++|||++|||+|+.||.+|.||||+|++|||||||+++| +|++++++.|+++..+++|||||+||++||++|..+
T Consensus 5 l~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~m~~~ 83 (674)
T cd01378 5 LVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLP-IYTDETIELYKGKSRYELPPHIYALADNAYRSMKSE 83 (674)
T ss_pred hhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCC-CCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHc
Confidence 7899999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCCCCCccHHHHHhhhchHHHhhcCCcccCCCCCCCccceEEEEEcCC
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKN 160 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~sn~ileaFGnAkT~~N~nSSRfgk~~~l~f~~~ 160 (1464)
++||||||||||||||||++|++|+||+.++++.. ....++++|+++||||||||||||++||||||||||++|+|+.+
T Consensus 84 ~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~-~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~~~ 162 (674)
T cd01378 84 NENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQ-KVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFDFK 162 (674)
T ss_pred CCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEECCC
Confidence 99999999999999999999999999999986532 23569999999999999999999999999999999999999999
Q ss_pred CCccceeEEEeecccccccccCCCCCcceeeccccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHhh
Q 000484 161 GRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRRA 239 (1464)
Q Consensus 161 g~i~ga~i~~ylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~~~~a 239 (1464)
|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++++|+||++++|+.++++||+++|.+++.|
T Consensus 163 g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~a 242 (674)
T cd01378 163 GDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKETQNA 242 (674)
T ss_pred CCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 7889999999999999999999999999999999999999999
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhcCeeEEecCCCCccccccccchhHHHHHHHhcCCCHHHHHHHHhhcccccCC----
Q 000484 240 MDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE---- 315 (1464)
Q Consensus 240 l~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~---- 315 (1464)
|+.|||+++++.+||+|||||||||||+|...++ +.+.+.+ ...++.||.||||++++|.++|+++++.+++
T Consensus 243 l~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~-~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~ 318 (674)
T cd01378 243 MKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGD-GAAVISD---KDVLDFAAYLLGVDPSELEKALTSRTIETGGGGRG 318 (674)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCC-CccccCC---hHHHHHHHHHcCCCHHHHHHHhcccEEEeCCCCCc
Confidence 9999999999999999999999999999987543 2334443 3479999999999999999999999999998
Q ss_pred ceeeccCChhHHhhhHHHHHHHHHHHHHHHHHHhhccccccC-CCCCeEeeeeccCCcccCCCCChHHHHHHHhHHHHHH
Q 000484 316 EVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQD-PNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQ 394 (1464)
Q Consensus 316 e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNE~Lq~ 394 (1464)
|.+++|+++++|..+||+|||+||++||+|||.+||.+|.+. .....+||||||||||+|+.||||||||||||||||+
T Consensus 319 e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~ 398 (674)
T cd01378 319 EVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQ 398 (674)
T ss_pred eeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999876 5567899999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHhhhcCcccccccccChHHHHHHhhc-CCCcccccccccccCC-CCchHHHHHHHHHHhcCCCCccCC
Q 000484 395 HFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEK-KPGGIIALLDEACMFP-KSTHETFAQKLYQTFKSNKRFIKP 472 (1464)
Q Consensus 395 ~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~-~~~Gil~lLdee~~~~-~~~d~~~~~kl~~~~~~~~~~~~~ 472 (1464)
+||+|+|+.||++|.+|||+|++|+|.||++|||||++ +|.|||++|||||++| ++||++|++||++.+++|+++.+|
T Consensus 399 ~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~~~~~ 478 (674)
T cd01378 399 IFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPHSDHF 478 (674)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCCCCCC
Confidence 99999999999999999999999999999999999999 8999999999999999 999999999999999999998888
Q ss_pred CCCCCCeEEEeccceeeeechhhhhhcccccHHHHHHHHhhCCchhHhhcCCCCCCCccCCCCCccchHHHHHHHHHHHH
Q 000484 473 KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLME 552 (1464)
Q Consensus 473 ~~~~~~F~I~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~ 552 (1464)
+.....|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+......+ ..+.+||+++||.||+.||+
T Consensus 479 ~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~-~~~~~tv~~~fk~qL~~Lm~ 557 (674)
T cd01378 479 SSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDADS-KKRPTTAGFKIKTSANALVE 557 (674)
T ss_pred CCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcccccccc-cCCCCcHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999986433322 23568999999999999999
Q ss_pred HhccCCCeEEEeccCCCCCCCCCCChhhHHHhhcccChhhHHHHHhhcCCCccChHHHHHhhhccCCCCC-CCCCchHHH
Q 000484 553 TLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVL-DGNYDDKVA 631 (1464)
Q Consensus 553 ~l~~t~~h~irCIkpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~-~~~~~~~~~ 631 (1464)
+|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.+|++||++|++... ....|++++
T Consensus 558 ~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~~k~~ 637 (674)
T cd01378 558 TLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKTWPTWPGDAKSG 637 (674)
T ss_pred HHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcccccccCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998743 234588999
Q ss_pred HHHHHHhcCC--CCceeccceeeccch-hhHHHHHHH
Q 000484 632 CEKILDKMGL--KGYQIGKTKVFLRAG-QMAELDARR 665 (1464)
Q Consensus 632 ~~~il~~~~~--~~~~iGkTkVFlr~~-~~~~Le~~r 665 (1464)
|+.||..+++ ++|++|+||||||++ ++..||..|
T Consensus 638 ~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 638 VEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 9999999875 489999999999997 688999765
No 10
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=8.4e-178 Score=1658.41 Aligned_cols=650 Identities=48% Similarity=0.828 Sum_probs=608.4
Q ss_pred CCCCCCCCcHHHHHHHHHHhccCcceeecCCeeEEecCCCCCCCCCCHHHHHHhhccccCCCCchHHHHHHHHHHHHHhc
Q 000484 1 MTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINE 80 (1464)
Q Consensus 1 ~~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~ 80 (1464)
|+.|++|||++|||+|+.||.++.||||+|+||||||||+.+| +|++++++.|+++. .+|||||+||++||+.|..+
T Consensus 13 l~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~y~~~~--~~~PHifaiA~~Ay~~m~~~ 89 (677)
T cd01383 13 LMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVP-LYGNDYIEAYRKKS--NDSPHVYAIADTAYNEMMRD 89 (677)
T ss_pred hhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCC-CCCHHHHHHhhCCC--CCCCCHHHHHHHHHHHHHHc
Confidence 6899999999999999999999999999999999999999997 99999999999764 46999999999999999999
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCCCCCccHHHHHhhhchHHHhhcCCcccCCCCCCCccceEEEEEcCC
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKN 160 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~sn~ileaFGnAkT~~N~nSSRfgk~~~l~f~~~ 160 (1464)
++||||||||||||||||++|++|+||+.+++. ..++++|+++||||||||||||++||||||||||++|+||.+
T Consensus 90 ~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~-----~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l~f~~~ 164 (677)
T cd01383 90 EVNQSIIISGESGAGKTETAKIAMQYLASLGGG-----SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSET 164 (677)
T ss_pred CCCceEEEecCCCCCcchHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEEEECCC
Confidence 999999999999999999999999999999753 368999999999999999999999999999999999999999
Q ss_pred CCccceeEEEeecccccccccCCCCCcceeeccccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHhh
Q 000484 161 GRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRRA 239 (1464)
Q Consensus 161 g~i~ga~i~~ylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~~~~a 239 (1464)
|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|..|+.|
T Consensus 165 g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f~~~~~a 244 (677)
T cd01383 165 GKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRFHTLVEA 244 (677)
T ss_pred CcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 7889999999999999999999999999999999999999999
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhcCeeEEecCCCCccccccccchhHHHHHHHhcCCCHHHHHHHHhhcccccCCceee
Q 000484 240 MDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEVIT 319 (1464)
Q Consensus 240 l~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~e~~~ 319 (1464)
|+.|||+++++.+||+|||||||||||+|.+.++.+.+.+.+ ...+..||.||||++++|.++||++++.++++.++
T Consensus 245 l~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~ 321 (677)
T cd01383 245 LDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVA---DEALSTAAKLIGCNIEDLMLALSTRKMHVNNDNIV 321 (677)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCC---hHHHHHHHHHhCCCHHHHHHHhhhcEEEeCCceEe
Confidence 999999999999999999999999999998754333333333 24699999999999999999999999999999999
Q ss_pred ccCChhHHhhhHHHHHHHHHHHHHHHHHHhhccccccCCC-CCeEeeeeccCCcccCCCCChHHHHHHHhHHHHHHHHHH
Q 000484 320 RTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPN-SRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQ 398 (1464)
Q Consensus 320 ~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~-~~~~IgiLDi~GFE~f~~NsfeQlcINyaNE~Lq~~f~~ 398 (1464)
+++++++|..+||+|||+||++||+|||.+||.+|.+... ...+||||||||||+|+.||||||||||||||||++|++
T Consensus 322 ~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~ 401 (677)
T cd01383 322 QKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHFNR 401 (677)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987543 467999999999999999999999999999999999999
Q ss_pred HHHHHhHHHhhhcCcccccccccChHHHHHHhhcCCCcccccccccccCCCCchHHHHHHHHHHhcCCCCccCCCCCCCC
Q 000484 399 HVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKPKLSRTS 478 (1464)
Q Consensus 399 ~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~~~~~~ 478 (1464)
+||+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|+|||++|++||++++++|+.|.+++ ...
T Consensus 402 ~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~--~~~ 479 (677)
T cd01383 402 HLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRGER--GGA 479 (677)
T ss_pred HHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCCCC--CCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998775 468
Q ss_pred eEEEeccceeeeechhhhhhcccccHHHHHHHHhhCCchhHhhcCCCC-----CC-C-----ccCCCCCccchHHHHHHH
Q 000484 479 FTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPL-----PE-E-----SSKSSKFSSIGSRFKLQL 547 (1464)
Q Consensus 479 F~I~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~-----~~-~-----~~~~~~~~tv~~~f~~~l 547 (1464)
|+|+||||+|+|+++||++||+|.++++++++|++|+++++. +|... +. . ..+.++..||+++|+.||
T Consensus 480 F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~-~f~~~~~~~s~~~~~~~~~~~~~~~~~tv~~~fk~qL 558 (677)
T cd01383 480 FTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQ-LFASSMLIQSPVVGPLYVASAADSQKLSVGTKFKGQL 558 (677)
T ss_pred eEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHH-HHHhhhhccccccccccccccccccCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999876 55421 10 0 111235689999999999
Q ss_pred HHHHHHhccCCCeEEEeccCCCCCCCCCCChhhHHHhhcccChhhHHHHHhhcCCCccChHHHHHhhhccCCCCCCCCCc
Q 000484 548 QSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNYD 627 (1464)
Q Consensus 548 ~~L~~~l~~t~~h~irCIkpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~ 627 (1464)
+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+++|||+|++|.+|++||++|++.... ..|
T Consensus 559 ~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~-~~~ 637 (677)
T cd01383 559 FKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLENIA-SQD 637 (677)
T ss_pred HHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCccccC-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997544 357
Q ss_pred hHHHHHHHHHhcCC--CCceeccceeeccchhhHHHHHHH
Q 000484 628 DKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 665 (1464)
Q Consensus 628 ~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 665 (1464)
++..|+.||+.+++ ++|++|+||||||+++++.||..|
T Consensus 638 ~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 638 PLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred HHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 88999999998875 489999999999999999999865
No 11
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=2.6e-177 Score=1660.78 Aligned_cols=657 Identities=41% Similarity=0.685 Sum_probs=615.7
Q ss_pred CCCCCCCCcHHHHHHHHHHhccCcceeecCCeeEEecCCCCCCCCCCHHHHHHhhccc-cCCCCchHHHHHHHHHHHHHh
Q 000484 1 MTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQ-FGELSPHVFAIADVAYRAMIN 79 (1464)
Q Consensus 1 ~~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~-~~~~~PHifaiA~~Ay~~m~~ 79 (1464)
|+.|++|||++||++|+.||.+++||||+|++|||||||+++| +|++++++.|+++. .+++|||||+||++||++|..
T Consensus 12 l~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay~~m~~ 90 (692)
T cd01385 12 LCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLP-IYNPKYVRLYENQQRLGKLPPHIFAIADVAYYNMLR 90 (692)
T ss_pred hhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCC-CCCHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999999999999998 99999999999887 789999999999999999999
Q ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCCCCCccHHHHHhhhchHHHhhcCCcccCCCCCCCccceEEEEEcC
Q 000484 80 EGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDK 159 (1464)
Q Consensus 80 ~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~sn~ileaFGnAkT~~N~nSSRfgk~~~l~f~~ 159 (1464)
+++||||||||||||||||++|+||+||+.+++.. ..+..|+++|+++||||||||||||++||||||||||++|+|+.
T Consensus 91 ~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~-~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~ 169 (692)
T cd01385 91 KKVNQCIVISGESGSGKTESTNFLIHHLTALSQKG-YAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYRE 169 (692)
T ss_pred cCCCceEEEecCCCCCchHHHHHHHHHHHHhccCC-ccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECC
Confidence 99999999999999999999999999999997532 23467999999999999999999999999999999999999999
Q ss_pred CCCccceeEEEeecccccccccCCCCCcceeeccccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHh
Q 000484 160 NGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRR 238 (1464)
Q Consensus 160 ~g~i~ga~i~~ylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~~~~ 238 (1464)
+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++++|.++.+|+||++++|...+++||+.+|..++.
T Consensus 170 ~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f~~~~~ 249 (692)
T cd01385 170 NGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEFERLKQ 249 (692)
T ss_pred CCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 688999999998888999999998887789999999999999
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHHHhcCeeEEecCC---CCccccccccchhHHHHHHHhcCCCHHHHHHHHhhcccccCC
Q 000484 239 AMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE---ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE 315 (1464)
Q Consensus 239 al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~ 315 (1464)
||+.|||++++++.||+|||||||||||+|.+..+ .+++.+.+ ...+..||.||||++++|.++||++++.++|
T Consensus 250 al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 326 (692)
T cd01385 250 AMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGN---PEVVDLLSQLLKVKRETLMEALTKKRTVTVN 326 (692)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCC---HHHHHHHHHHhCCCHHHHHHHhccCeEEeCC
Confidence 99999999999999999999999999999987432 34444444 3579999999999999999999999999999
Q ss_pred ceeeccCChhHHhhhHHHHHHHHHHHHHHHHHHhhccccccCC---CCCeEeeeeccCCcccCCC-CChHHHHHHHhHHH
Q 000484 316 EVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDP---NSRTIIGVLDIYGFESFKL-NSFEQFCINFTNEK 391 (1464)
Q Consensus 316 e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~---~~~~~IgiLDi~GFE~f~~-NsfeQlcINyaNE~ 391 (1464)
+.+++|+++++|..+||+|||+||++||+|||++||.+|.+.. ....+||||||||||+|+. ||||||||||||||
T Consensus 327 e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcINyaNEk 406 (692)
T cd01385 327 ETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCINYANEQ 406 (692)
T ss_pred CeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhhHHHHHH
Confidence 9999999999999999999999999999999999999998643 2468999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHhHHHhhhcCcccccccccChHHHHHHhhcCCCcccccccccccCCCCchHHHHHHHHHHhcCCCCccC
Q 000484 392 LQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIK 471 (1464)
Q Consensus 392 Lq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~ 471 (1464)
||++|++|||+.||++|.+|||+|++|+|.||++|||||++||.|||++|||||++|++||++|++|+++.+++|+.|.+
T Consensus 407 LQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~~~~~~~ 486 (692)
T cd01385 407 LQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKDNKYYEG 486 (692)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCCCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEeccceeeeechhhhhhcccccHHHHHHHHhhCCchhHhhcCCCCCCCcc---------CCCCCccchHH
Q 000484 472 PKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESS---------KSSKFSSIGSR 542 (1464)
Q Consensus 472 ~~~~~~~F~I~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~---------~~~~~~tv~~~ 542 (1464)
|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+|++|+.||+..+.... ++.+.+||+++
T Consensus 487 ~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~tV~~~ 566 (692)
T cd01385 487 PQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRWAVLRAAFRAMAAPSVSAQ 566 (692)
T ss_pred CCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCcccccccccccccccCccCCcHHHH
Confidence 988788999999999999999999999999999999999999999999999976432211 11234799999
Q ss_pred HHHHHHHHHHHhccCCCeEEEeccCCCCCCCCCCChhhHHHhhcccChhhHHHHHhhcCCCccChHHHHHhhhccCCCCC
Q 000484 543 FKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVL 622 (1464)
Q Consensus 543 f~~~l~~L~~~l~~t~~h~irCIkpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~ 622 (1464)
|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.+|++||++|+|...
T Consensus 567 f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~L~~~~~ 646 (692)
T cd01385 567 FQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRILLPKGA 646 (692)
T ss_pred HHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred CCCCchHHHHHHHHHhcCCC--CceeccceeeccchhhHHHHHHH
Q 000484 623 DGNYDDKVACEKILDKMGLK--GYQIGKTKVFLRAGQMAELDARR 665 (1464)
Q Consensus 623 ~~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r 665 (1464)
...++.|+.||+.++++ +|++|+||||||+++++.||...
T Consensus 647 ---~~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~ 688 (692)
T cd01385 647 ---QSCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETL 688 (692)
T ss_pred ---cchHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHH
Confidence 23467799999998764 89999999999999999999753
No 12
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=3.1e-177 Score=1656.48 Aligned_cols=656 Identities=41% Similarity=0.725 Sum_probs=612.5
Q ss_pred CCCCCCCCcHHHHHHHHHHhccCcceeecCCeeEEecCCCCCCCCCCHHHHHHhhccccCCCCchHHHHHHHHHHHHHhc
Q 000484 1 MTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINE 80 (1464)
Q Consensus 1 ~~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~ 80 (1464)
|+.|++|||++||++|+.||..|.||||+|+||||||||+.+| +|++++++.|+++..+++|||||+||++||+.|..+
T Consensus 6 l~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~m~~~ 84 (677)
T cd01387 6 MTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFP-IYGPEQVQQYAGRALGENPPHLFAIANLAFAKMLDA 84 (677)
T ss_pred hhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCCCCCccHHHHHhhhchHHHhhcCCcccCCCCCCCccceEEEEEcCC
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKN 160 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~sn~ileaFGnAkT~~N~nSSRfgk~~~l~f~~~ 160 (1464)
++||||||||||||||||++|++|+||+.+++.. ...++++|+++||||||||||||++||||||||||++|+|+ +
T Consensus 85 ~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f~-~ 160 (677)
T cd01387 85 KQNQCVIISGESGSGKTEATKLILRYLAAMNQGG---SAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLE-G 160 (677)
T ss_pred CCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCC---cchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEec-C
Confidence 9999999999999999999999999999987532 24689999999999999999999999999999999999995 7
Q ss_pred CCccceeEEEeecccccccccCCCCCcceeeccccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHhh
Q 000484 161 GRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRRA 239 (1464)
Q Consensus 161 g~i~ga~i~~ylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~~~~a 239 (1464)
|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|..+++.+|+++|..|+.|
T Consensus 161 g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~a 240 (677)
T cd01387 161 GVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFRRLLAA 240 (677)
T ss_pred CcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 7889999999999999999999999989999999999999999
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhcCeeEEecCC--CCccccccccchhHHHHHHHhcCCCHHHHHHHHhhcccccCCce
Q 000484 240 MDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE--ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEV 317 (1464)
Q Consensus 240 l~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~e~ 317 (1464)
|+.|||+++++.+||+|||||||||||+|....+ .+.+.+.++ ..+..||+||||++++|.++||++++.+++|.
T Consensus 241 l~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~ 317 (677)
T cd01387 241 MEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVSA---REIQAVAELLQISPEGLQKAITFKVTETRREK 317 (677)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCCH---HHHHHHHHHhCCCHHHHHHHhccCeEEeCCce
Confidence 9999999999999999999999999999987532 223344433 47999999999999999999999999999999
Q ss_pred eeccCChhHHhhhHHHHHHHHHHHHHHHHHHhhccccccCCCCCeEeeeeccCCcccCCCCChHHHHHHHhHHHHHHHHH
Q 000484 318 ITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFN 397 (1464)
Q Consensus 318 ~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNE~Lq~~f~ 397 (1464)
+.+++++++|..+||+|||+||++||+|||.+||.+|.+. ....+||||||||||+|+.||||||||||||||||++||
T Consensus 318 i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~ 396 (677)
T cd01387 318 IFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT-QDTLSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFN 396 (677)
T ss_pred EeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999864 456799999999999999999999999999999999999
Q ss_pred HHHHHHhHHHhhhcCcccccccccChHHHHHHhhcCCCcccccccccccCCCCchHHHHHHHHHHhcCCCCccCCCCCCC
Q 000484 398 QHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKPKLSRT 477 (1464)
Q Consensus 398 ~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~~~~~ 477 (1464)
+|||+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|+++|++|++|++..+++|+.|.+|+.+..
T Consensus 397 ~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~~~~~~ 476 (677)
T cd01387 397 KIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKPKMPLP 476 (677)
T ss_pred HHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred CeEEEeccceeeeechhhhhhcccccHHHHHHHHhhCCchhHhhcCCCCCCC---------c--cCCCCCccchHHHHHH
Q 000484 478 SFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEE---------S--SKSSKFSSIGSRFKLQ 546 (1464)
Q Consensus 478 ~F~I~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~---------~--~~~~~~~tv~~~f~~~ 546 (1464)
.|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+..... + .+..+.+||+++|+.|
T Consensus 477 ~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~s~~~~~~~~~tv~~~f~~s 556 (677)
T cd01387 477 EFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRLGKSSSGTRLYKAHTVAAKFQQS 556 (677)
T ss_pred eeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccccCCCccccccCCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999753110 0 0112457999999999
Q ss_pred HHHHHHHhccCCCeEEEeccCCCCCCCCCCChhhHHHhhcccChhhHHHHHhhcCCCccChHHHHHhhhccCCCCCCCCC
Q 000484 547 LQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNY 626 (1464)
Q Consensus 547 l~~L~~~l~~t~~h~irCIkpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~~~~ 626 (1464)
|+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|+|||+|++|++|++||++|+|.......
T Consensus 557 L~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~ 636 (677)
T cd01387 557 LLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALKLARPA 636 (677)
T ss_pred HHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987543322
Q ss_pred chHHHHHHHHHhcCC--CCceeccceeeccchhhHHHHHHH
Q 000484 627 DDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 665 (1464)
Q Consensus 627 ~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 665 (1464)
+.+..+..++..+++ +.|++|+||||||++++..||..|
T Consensus 637 ~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 637 PGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred cHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 334455778877765 479999999999999999999865
No 13
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=1.9e-176 Score=1658.57 Aligned_cols=657 Identities=43% Similarity=0.733 Sum_probs=612.7
Q ss_pred CCCCCCCCcHHHHHHHHHHhccCcceeecCCeeEEecCCCCCCCCCCHHHHHHhhccccCCCCchHHHHHHHHHHHHHhc
Q 000484 1 MTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINE 80 (1464)
Q Consensus 1 ~~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~ 80 (1464)
|+.|++|||++|||+|+.||.++.||||+|+||||||||+.+|++|++++++.|+++..+++|||||+||++||++|..+
T Consensus 9 l~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~ 88 (717)
T cd01382 9 NCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAYRDMKVL 88 (717)
T ss_pred hhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCCCCCccHHHHHhhhchHHHhhcCCcccCCCCCCCccceEEEEEcCC
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKN 160 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~sn~ileaFGnAkT~~N~nSSRfgk~~~l~f~~~ 160 (1464)
++||||||||||||||||++|++|+||+.+++++ ..|+++|+++||||||||||||++||||||||||++|+||.+
T Consensus 89 ~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~ 164 (717)
T cd01382 89 KMSQSIIVSGESGAGKTENTKFVLRYLTESYGSG----QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEK 164 (717)
T ss_pred CCCCeEEEecCCCCChhHHHHHHHHHHHhhccCC----ccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEEEEECCC
Confidence 9999999999999999999999999999986542 579999999999999999999999999999999999999999
Q ss_pred CCccceeEEEeecccccccccCCCCCcceeeccccc-CChhHHhhcCCCCCCCCccccCCC-------------------
Q 000484 161 GRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSN------------------- 220 (1464)
Q Consensus 161 g~i~ga~i~~ylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~------------------- 220 (1464)
|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||+++.
T Consensus 165 g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~~~~~~s 244 (717)
T cd01382 165 NSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQILQNRKS 244 (717)
T ss_pred CCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCcccccccccccccccccccc
Confidence 999999999999999999999999999999999999 788999999999999999999753
Q ss_pred -------ccccCCCCcHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHhcCeeEEecCC-CCccccccccchhHHHHHH
Q 000484 221 -------CYALDGVDDTEEYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE-ADSSVIKDEKSRFHLNTTA 292 (1464)
Q Consensus 221 -------~~~~~~~~d~~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~-~~~~~~~~~~~~~~l~~~a 292 (1464)
|...+++||+++|.+|+.||++|||+++++..||+|||||||||||+|.+... .+.|.+.+ .+...+..||
T Consensus 245 ~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~-~~~~~l~~~a 323 (717)
T cd01382 245 PEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKN-QSEQSLEYCA 323 (717)
T ss_pred cccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecC-CCHHHHHHHH
Confidence 23457899999999999999999999999999999999999999999987432 23444433 2345799999
Q ss_pred HhcCCCHHHHHHHHhhcccc-----cCCceeeccCChhHHhhhHHHHHHHHHHHHHHHHHHhhccccccCCCCCeEeeee
Q 000484 293 ELLKCDAKSLEDALINRVMV-----TPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVL 367 (1464)
Q Consensus 293 ~lLgv~~~~L~~~l~~~~~~-----~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiL 367 (1464)
.||||++++|.++|++|++. ++++.+++|+++++|..+||+|||+||++||+|||.+||.++..+. ...+||||
T Consensus 324 ~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~-~~~~IgiL 402 (717)
T cd01382 324 ELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFET-SSNFIGVL 402 (717)
T ss_pred HHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCcEEEEE
Confidence 99999999999999999987 6789999999999999999999999999999999999999997643 56789999
Q ss_pred ccCCcccCCCCChHHHHHHHhHHHHHHHHHHHHHHHhHHHhhhcCcccccccccChHHHHHHhhcCCCcccccccccccC
Q 000484 368 DIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMF 447 (1464)
Q Consensus 368 Di~GFE~f~~NsfeQlcINyaNE~Lq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~~~Gil~lLdee~~~ 447 (1464)
||||||+|+.||||||||||||||||++|+++||+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++
T Consensus 403 DIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~~ 482 (717)
T cd01382 403 DIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENRL 482 (717)
T ss_pred eccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhcCCCCccCCCCC----------CCCeEEEeccceeeeechhhhhhcccccHHHHHHHHhhCCch
Q 000484 448 PKSTHETFAQKLYQTFKSNKRFIKPKLS----------RTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCP 517 (1464)
Q Consensus 448 ~~~~d~~~~~kl~~~~~~~~~~~~~~~~----------~~~F~I~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~ 517 (1464)
|++||++|++||++.+++|++|..|+.+ ...|+|+||||+|+|+++||++||+|.++++++++|++|+++
T Consensus 483 p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ll~~S~n~ 562 (717)
T cd01382 483 PQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESKDK 562 (717)
T ss_pred CCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHHHHhCchH
Confidence 9999999999999999999988776532 357999999999999999999999999999999999999999
Q ss_pred hHhhcCCCCCCC---ccC--CCCCccchHHHHHHHHHHHHHhccCCCeEEEeccCCCCCCCCCCChhhHHHhhcccChhh
Q 000484 518 FVSGLFPPLPEE---SSK--SSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLE 592 (1464)
Q Consensus 518 ~v~~lf~~~~~~---~~~--~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~~~~fd~~~v~~QLr~~gvle 592 (1464)
+|+.||+..... ..+ ..++.||+++||.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||
T Consensus 563 ~i~~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE 642 (717)
T cd01382 563 FLRSLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQLQCSGMVS 642 (717)
T ss_pred HHHHHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHHHHhcchHH
Confidence 999999864321 111 225679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCccChHHHHHhhhccCCCCCCCCCchHHHHHHHHHhcCC--CCceeccceeeccchhhHHHHHH
Q 000484 593 AIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDAR 664 (1464)
Q Consensus 593 ~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~ 664 (1464)
+|||+++|||+|++|.+|++||+.|+|.... ..|++..|+.||+.+++ ++|++|+||||||+|+++.||++
T Consensus 643 ~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~-~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~~ 715 (717)
T cd01382 643 VLDLMQGGFPSRASFHELYNMYKKYMPPKLV-RLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQI 715 (717)
T ss_pred HHHHHHccCchhhhHHHHHHHHHHhCCcccC-CCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHHH
Confidence 9999999999999999999999999986544 35789999999999876 48999999999999999999986
No 14
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=1.3e-174 Score=1623.86 Aligned_cols=635 Identities=39% Similarity=0.708 Sum_probs=597.5
Q ss_pred CCCCCCCCcHHHHHHHHHHhccCcceeecCCeeEEecCCCCCCCCCCHHHHHHhhccccCCCCchHHHHHHHHHHHHHhc
Q 000484 1 MTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINE 80 (1464)
Q Consensus 1 ~~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~ 80 (1464)
|+.|++|||++||++|+.||..+.||||+|+||||||||+.+| +|++++++.|+++..+++|||||+||+.||+.|...
T Consensus 5 l~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~ 83 (653)
T cd01379 5 LATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLG-LYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSLVTY 83 (653)
T ss_pred hhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999999999999999996 999999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCCCCCccHHHHHhhhchHHHhhcCCcccCCCCCCCccceEEEEEcCC
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKN 160 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~sn~ileaFGnAkT~~N~nSSRfgk~~~l~f~~~ 160 (1464)
++||||||||||||||||++|++|+||+.+++.. ..+|+++|+++||||||||||||++||||||||||++|+|+.+
T Consensus 84 ~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~~ 160 (653)
T cd01379 84 NQDQCIVISGESGSGKTESAHLLVQQLTVLGKAN---NRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRS 160 (653)
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHHHHhcCCC---CccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEECCC
Confidence 9999999999999999999999999999986532 3579999999999999999999999999999999999999999
Q ss_pred CCccceeEEEeecccccccccCCCCCcceeeccccc-CChhHH-hhcCCCCCCCCccccCCCccccCCCC----cHHHHH
Q 000484 161 GRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVR-EKFKLGDPKSFHYLNQSNCYALDGVD----DTEEYL 234 (1464)
Q Consensus 161 g~i~ga~i~~ylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~-~~l~L~~~~~~~yl~~~~~~~~~~~~----d~~~f~ 234 (1464)
|.|+||+|.+|||||||||+|++||||||||||||+ ++++++ +.|+|.++.+|+||++++|..+++++ |+++|.
T Consensus 161 g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~~~f~ 240 (653)
T cd01379 161 GAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYKDQFE 240 (653)
T ss_pred CcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHHHHHH
Confidence 999999999999999999999999999999999999 454554 78999999999999999887777765 468999
Q ss_pred HHHhhhhhcCCCHHHHHHHHHHHHHHHHhcCeeEEecCC---CCccccccccchhHHHHHHHhcCCCHHHHHHHHhhccc
Q 000484 235 ATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE---ADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVM 311 (1464)
Q Consensus 235 ~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~ 311 (1464)
.|+.||.+|||+++++..||+|||||||||||+|.+... .+.+.+.+ ...+..||.||||++++|.++|+++++
T Consensus 241 ~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~---~~~l~~~A~LLgv~~~~L~~~L~~~~~ 317 (653)
T cd01379 241 QIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSN---VAALENAASLLCIRSDELQEALTSHCV 317 (653)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhcccEE
Confidence 999999999999999999999999999999999986432 22334433 357999999999999999999999999
Q ss_pred ccCCceeeccCChhHHhhhHHHHHHHHHHHHHHHHHHhhccccccCCC-----CCeEeeeeccCCcccCCCCChHHHHHH
Q 000484 312 VTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPN-----SRTIIGVLDIYGFESFKLNSFEQFCIN 386 (1464)
Q Consensus 312 ~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~-----~~~~IgiLDi~GFE~f~~NsfeQlcIN 386 (1464)
.++|+.+++++++++|..+||+|||+||++||+|||.+||.+|.++.. ...+||||||||||+|+.|||||||||
T Consensus 318 ~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcIN 397 (653)
T cd01379 318 VTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQLCIN 397 (653)
T ss_pred EeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHHHHhh
Confidence 999999999999999999999999999999999999999999986542 357999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHhHHHhhhcCcccccccccChHHHHHHhhcCCCcccccccccccCCCCchHHHHHHHHHHhcCC
Q 000484 387 FTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSN 466 (1464)
Q Consensus 387 yaNE~Lq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~ 466 (1464)
|||||||++|+++||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|++|++.+++ +
T Consensus 398 yaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~~~-~ 476 (653)
T cd01379 398 IANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDNLK-S 476 (653)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHhcC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999886 4
Q ss_pred CCccCCCCCCCCeEEEeccceeeeechhhhhhcccccHHHHHHHHhhCCchhHhhcCCCCCCCccCCCCCccchHHHHHH
Q 000484 467 KRFIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQ 546 (1464)
Q Consensus 467 ~~~~~~~~~~~~F~I~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~ 546 (1464)
+.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++| +||+++||.|
T Consensus 477 ~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S----------------------~tv~~~fr~~ 534 (653)
T cd01379 477 KFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS----------------------QTVASYFRYS 534 (653)
T ss_pred CCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC----------------------cHHHHHHHHH
Confidence 678888888889999999999999999999999999999999999987 4899999999
Q ss_pred HHHHHHHhccCCCeEEEeccCCCCCCCCCCChhhHHHhhcccChhhHHHHHhhcCCCccChHHHHHhhhccCCCCCCCCC
Q 000484 547 LQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNY 626 (1464)
Q Consensus 547 l~~L~~~l~~t~~h~irCIkpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~~~~ 626 (1464)
|++||++|++|+||||||||||+.+.|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|++.......
T Consensus 535 l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~~~~~~~~ 614 (653)
T cd01379 535 LMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAYRFEEEPV 614 (653)
T ss_pred HHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987544445
Q ss_pred chHHHHHHHHHhcCCCCceeccceeeccchhhHHHHHHH
Q 000484 627 DDKVACEKILDKMGLKGYQIGKTKVFLRAGQMAELDARR 665 (1464)
Q Consensus 627 ~~~~~~~~il~~~~~~~~~iGkTkVFlr~~~~~~Le~~r 665 (1464)
+.++.|+.||..++.++|++||||||||+++++.||.+|
T Consensus 615 ~~~~~~~~il~~~~~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 615 SSPESCALILEKAKLDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred ChHHHHHHHHHhCCCCCEEecceEEEEecCHHHHHHhcC
Confidence 789999999999999999999999999999999999864
No 15
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.9e-174 Score=1495.47 Aligned_cols=688 Identities=41% Similarity=0.720 Sum_probs=644.4
Q ss_pred CCCCCCCCcHHHHHHHHHHhccCcceeecCCeeEEecCCCCCCCCCCHHHHHHhhccccCCCCchHHHHHHHHHHHHHhc
Q 000484 1 MTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINE 80 (1464)
Q Consensus 1 ~~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~ 80 (1464)
||-|+-++|.+|..||+.||..+.||||+|+|||+||||+.+| +|++..|..|+|+...+.||||||+|+.+|++|.-.
T Consensus 23 m~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~-~ft~~~~~~YqG~~q~E~pPHiyAladnmY~nM~~~ 101 (1106)
T KOG0162|consen 23 MVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMP-YFTEKEMELYQGAAQYENPPHIYALADNMYRNMKID 101 (1106)
T ss_pred eeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccc-cchHHHHHHhhchhhccCCchhhhhHHHHHHHhhhc
Confidence 7889999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCCCCCccHHHHHhhhchHHHhhcCCcccCCCCCCCccceEEEEEcCC
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKN 160 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~sn~ileaFGnAkT~~N~nSSRfgk~~~l~f~~~ 160 (1464)
.+|||||||||||||||++||+||+|++.+++ .+.+...|.+-||++||+|||||||||+||+||||||||+||+|+..
T Consensus 102 ~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~-~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~Ei~Fs~g 180 (1106)
T KOG0162|consen 102 NENQCVIISGESGAGKTVAAKRIMQYISRVSG-GGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYLEIQFSRG 180 (1106)
T ss_pred cccceEEEecCCCCCchHHHHHHHHHHHHhcc-CCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceEEEEecCC
Confidence 99999999999999999999999999999984 45566788899999999999999999999999999999999999999
Q ss_pred CCccceeEEEeecccccccccCCCCCcceeeccccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHhh
Q 000484 161 GRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRRA 239 (1464)
Q Consensus 161 g~i~ga~i~~ylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~~~~a 239 (1464)
|..+||+|.+|||||||||.|.++||||||||||++ |+.+.|..||+..|+.|.||+.++|+.++++||..+|.+|+.|
T Consensus 181 geP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kdfq~Tl~A 260 (1106)
T KOG0162|consen 181 GEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKDFQETLHA 260 (1106)
T ss_pred CCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHHHHHHHHH
Confidence 999999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhcCeeEEecCCCCccccccccchhHHHHHHHhcCCCHHHHHHHHhhcccccC----C
Q 000484 240 MDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTP----E 315 (1464)
Q Consensus 240 l~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~----~ 315 (1464)
|+++|+.+++|+.||++||+|||||||.|.+. ...+.+.+. ..++-.|.|||||...|++.||.|.|.+. .
T Consensus 261 M~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee--~~~a~V~~~---~~~~f~ayLlgi~s~~l~~~Lt~R~M~s~~G~kr 335 (1106)
T KOG0162|consen 261 MKVIGINQEEQDEVLRMVAGILHLGNISFIEE--GNYAAVSDK---SVLEFPAYLLGIDSARLEEKLTSRIMESKWGGKR 335 (1106)
T ss_pred heeccCChHHHHHHHHHHHHHHhccceeEEee--CCcceeccc---hHHHhHHHHhcCCHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999983 233444443 36899999999999999999999998753 5
Q ss_pred ceeeccCChhHHhhhHHHHHHHHHHHHHHHHHHhhccccccCCC-CCeEeeeeccCCcccCCCCChHHHHHHHhHHHHHH
Q 000484 316 EVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPN-SRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQ 394 (1464)
Q Consensus 316 e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~-~~~~IgiLDi~GFE~f~~NsfeQlcINyaNE~Lq~ 394 (1464)
+.+.+||+++||...||||||+||.+||||||++||.++...+. ...+||||||||||+|++||||||||||.||||||
T Consensus 336 ~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINfVNEKLQQ 415 (1106)
T KOG0162|consen 336 EVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINFVNEKLQQ 415 (1106)
T ss_pred eeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999975443 57899999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHhhhcCcccccccccChHHHHHHhhc-CCCcccccccccccCC----CCchHHHHHHHHHHhcCCCCc
Q 000484 395 HFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEK-KPGGIIALLDEACMFP----KSTHETFAQKLYQTFKSNKRF 469 (1464)
Q Consensus 395 ~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~-~~~Gil~lLdee~~~~----~~~d~~~~~kl~~~~~~~~~~ 469 (1464)
.|++-+++.|||+|.+|||.|++|+|.||.-|+||||. .|.||+++|||.|.-. .|.|++|+++|...+++|++|
T Consensus 416 IFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~~~s~phF 495 (1106)
T KOG0162|consen 416 IFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKLFGSHPHF 495 (1106)
T ss_pred HHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999996 4679999999999753 467999999999999999999
Q ss_pred cCCCCCCCCeEEEeccceeeeechhhhhhcccccHHHHHHHHhhCCchhHhhcCCCCCCCccCCCCCccchHHHHHHHHH
Q 000484 470 IKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQS 549 (1464)
Q Consensus 470 ~~~~~~~~~F~I~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~ 549 (1464)
.. ....|+|+||||+|+||++||.+||||.|..|++.|+..|+++|++.||+...+.. +..+.+|.|++.++|.++
T Consensus 496 ~~---~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~d-skrRP~Tag~kIkkqANd 571 (1106)
T KOG0162|consen 496 ES---RSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDAD-SKRRPPTAGDKIKKQAND 571 (1106)
T ss_pred cc---ccCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhccc-ccCCCCCchhhHHhhHHH
Confidence 74 34789999999999999999999999999999999999999999999999754443 344779999999999999
Q ss_pred HHHHhccCCCeEEEeccCCCCCCCCCCChhhHHHhhcccChhhHHHHHhhcCCCccChHHHHHhhhccCCCCCC-CCCch
Q 000484 550 LMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLD-GNYDD 628 (1464)
Q Consensus 550 L~~~l~~t~~h~irCIkpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~-~~~~~ 628 (1464)
|++||..|.||||||||||+.|.|+.||...|.+|+.|+|+-|.|||+|+||.+|..|+.|+.||.+|.|..+. +..|+
T Consensus 572 LVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyailsp~t~~twqGD~ 651 (1106)
T KOG0162|consen 572 LVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAILSPQTWPTWQGDE 651 (1106)
T ss_pred HHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheecCcccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998643 34689
Q ss_pred HHHHHHHHHhcCC--CCceeccceeeccchh-hHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 000484 629 KVACEKILDKMGL--KGYQIGKTKVFLRAGQ-MAELDARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAIVL 699 (1464)
Q Consensus 629 ~~~~~~il~~~~~--~~~~iGkTkVFlr~~~-~~~Le~~r~~~l~~~a~~IQ~~~R~~l~Rk~~~~~r~aai~i 699 (1464)
+.+|+.||....+ +.||+|.||||++... +..||.+|+......|.+||++||.|++|++|.++|.-+..+
T Consensus 652 ~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~ree~t~l 725 (1106)
T KOG0162|consen 652 KQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMREEATKL 725 (1106)
T ss_pred HHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998755 5899999999999864 688999999999999999999999999999999998766543
No 16
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=1.5e-173 Score=1635.08 Aligned_cols=661 Identities=54% Similarity=0.915 Sum_probs=624.8
Q ss_pred CCCCCCCCcHHHHHHHHHHhccCcceeecCCeeEEecCCCCCCCCCCHHHHHHhhccccCCCCchHHHHHHHHHHHHHhc
Q 000484 1 MTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINE 80 (1464)
Q Consensus 1 ~~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~ 80 (1464)
|+.|++|||++||++|+.||.++.||||+|++|||||||+++| +|++++++.|+++..+++|||||+||++||+.|..+
T Consensus 11 l~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~ 89 (677)
T smart00242 11 LVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLP-IYTDEVIKKYRGKSRGELPPHVFAIADNAYRNMLND 89 (677)
T ss_pred hhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCC-CCCHHHHHHccCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCCCCCccHHHHHhhhchHHHhhcCCcccCCCCCCCccceEEEEEcCC
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKN 160 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~sn~ileaFGnAkT~~N~nSSRfgk~~~l~f~~~ 160 (1464)
++||||||||||||||||++|++|+||+.++++.. ...+|+++|+++||||||||||||++||||||||||++|+||.+
T Consensus 90 ~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~-~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~l~f~~~ 168 (677)
T smart00242 90 KENQSIIISGESGAGKTENTKKIMQYLAAVSGSNT-SVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFIEIHFDAK 168 (677)
T ss_pred CCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCccchheeEEEEECCC
Confidence 99999999999999999999999999999986532 34679999999999999999999999999999999999999999
Q ss_pred CCccceeEEEeecccccccccCCCCCcceeeccccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHhh
Q 000484 161 GRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRRA 239 (1464)
Q Consensus 161 g~i~ga~i~~ylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~~~~a 239 (1464)
|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|.+++.|
T Consensus 169 g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~a 248 (677)
T smart00242 169 GKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAEEFKETLNA 248 (677)
T ss_pred CcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 6889999999999999999999999999999999999999999
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhcCeeEEecCCCCcc-ccccccchhHHHHHHHhcCCCHHHHHHHHhhcccccCCcee
Q 000484 240 MDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSS-VIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEVI 318 (1464)
Q Consensus 240 l~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~-~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~e~~ 318 (1464)
|+.|||+++++.+||+|||||||||||+|.+.++.++. .+. +...++.||.||||++++|.++|+++++.+++|.+
T Consensus 249 l~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~ 325 (677)
T smart00242 249 MRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVK---DKEELENAAELLGVDPEELEKALTKRKIKTGGEVI 325 (677)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccC---CHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceE
Confidence 99999999999999999999999999999875432221 233 34579999999999999999999999999999999
Q ss_pred eccCChhHHhhhHHHHHHHHHHHHHHHHHHhhccccccCCCCCeEeeeeccCCcccCCCCChHHHHHHHhHHHHHHHHHH
Q 000484 319 TRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQ 398 (1464)
Q Consensus 319 ~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNE~Lq~~f~~ 398 (1464)
++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||||||||||++|++
T Consensus 326 ~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkLq~~f~~ 405 (677)
T smart00242 326 TKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKLQQFFNQ 405 (677)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecccccccccCCHHHHHhHhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999998767789999999999999999999999999999999999999
Q ss_pred HHHHHhHHHhhhcCcccccccccChHHHHHHhhcCCCcccccccccccCCCCchHHHHHHHHHHhcCCCCccCCC-CCCC
Q 000484 399 HVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKPK-LSRT 477 (1464)
Q Consensus 399 ~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~-~~~~ 477 (1464)
++|+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|++||++|++||++.+++|+.|.+|+ ....
T Consensus 406 ~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~~~~~~~~ 485 (677)
T smart00242 406 HVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSKPRKKGRT 485 (677)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999984 4567
Q ss_pred CeEEEeccceeeeechhhhhhcccccHHHHHHHHhhCCchhHhhcCCCCCCCccCCCCCccchHHHHHHHHHHHHHhccC
Q 000484 478 SFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNST 557 (1464)
Q Consensus 478 ~F~I~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t 557 (1464)
.|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.......+..+.+||+++|+.||+.||++|++|
T Consensus 486 ~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~tv~~~fk~~L~~L~~~l~~t 565 (677)
T smart00242 486 EFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNAGSKKRFRTVGSQFKESLNKLMDTLNST 565 (677)
T ss_pred eEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccccccCCCCcHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999998754433334467899999999999999999999
Q ss_pred CCeEEEeccCCCCCCCCCCChhhHHHhhcccChhhHHHHHhhcCCCccChHHHHHhhhccCCCCCCC-CCchHHHHHHHH
Q 000484 558 EPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDG-NYDDKVACEKIL 636 (1464)
Q Consensus 558 ~~h~irCIkpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~~-~~~~~~~~~~il 636 (1464)
+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.+|+.||++|++..... ..++++.|+.||
T Consensus 566 ~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~k~~~~~iL 645 (677)
T smart00242 566 NPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGGDAKEACEALL 645 (677)
T ss_pred CCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcccccccCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999865432 346899999999
Q ss_pred HhcCC--CCceeccceeeccchhhHHHHHHHH
Q 000484 637 DKMGL--KGYQIGKTKVFLRAGQMAELDARRA 666 (1464)
Q Consensus 637 ~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r~ 666 (1464)
..+++ ++|++|+||||||++++..||++|.
T Consensus 646 ~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 646 QSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred HhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 99864 5899999999999999999998873
No 17
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=5.7e-172 Score=1680.57 Aligned_cols=905 Identities=40% Similarity=0.653 Sum_probs=737.1
Q ss_pred CCCCCCCCcHHHHHHHHHHhccCcceeecCCeeEEecCCCCCCCCCCHHHHHHhhccccCCCCchHHHHHHHHHHHHHhc
Q 000484 1 MTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINE 80 (1464)
Q Consensus 1 ~~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~ 80 (1464)
|+.|+|||||+|||||+.||.++.||||+|..||+||||+++| ||++++++.|+|+...++||||||||+.||+.|+..
T Consensus 87 Ma~LT~lNeasVL~nL~~RY~~~lIyTYSGLFcVviNPyk~lp-iYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~ 165 (1930)
T KOG0161|consen 87 MAELTFLNEASVLHNLKQRYASDLIYTYSGLFCVVINPYKRLP-IYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQD 165 (1930)
T ss_pred HHHhcccChHHHHhhHHHHHHhChHHHcccceeEEecCCcCCC-CCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCCCC---CccHHHHHhhhchHHHhhcCCcccCCCCCCCccceEEEEE
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVE---GRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQF 157 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~---~~~i~~~il~sn~ileaFGnAkT~~N~nSSRfgk~~~l~f 157 (1464)
+.||||+|+|||||||||+||.|++|||.+++++... +.+++++|+++||||||||||+|++|+|||||||||.|+|
T Consensus 166 renQSiLiTGESGAGKTeNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F 245 (1930)
T KOG0161|consen 166 RENQSILITGESGAGKTENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHF 245 (1930)
T ss_pred CCCceEeeecCCCCCcchhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEec
Confidence 9999999999999999999999999999998754221 1578999999999999999999999999999999999999
Q ss_pred cCCCCccceeEEEeecccccccccCCCCCcceeeccccc-CChhHHhhcCCCC-CCCCccccCCCccccCCCCcHHHHHH
Q 000484 158 DKNGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGD-PKSFHYLNQSNCYALDGVDDTEEYLA 235 (1464)
Q Consensus 158 ~~~g~i~ga~i~~ylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~-~~~~~yl~~~~~~~~~~~~d~~~f~~ 235 (1464)
|..|.|+||.|.+||||||||++|+++||||||||||++ +++..+..|.|.+ +.+|.|+.++.. .++|+||+++|..
T Consensus 246 ~~~G~i~~a~Ie~yLLEKsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef~~ 324 (1930)
T KOG0161|consen 246 DATGKIAGADIETYLLEKSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEFQE 324 (1930)
T ss_pred CCCCccchhhHHHHHHHHhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHHHHHH
Confidence 999999999999999999999999999999999999999 7888899999975 899999999887 8999999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHHhcCeeEEecCCCCccccccccchhHHHHHHHhcCCCHHHHHHHHhhcccccCC
Q 000484 236 TRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPE 315 (1464)
Q Consensus 236 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~ 315 (1464)
|..||+++||+++++.+||+|+|||||||||.|......+...+.+. .....+|.||||+.++|.+++++..+.+++
T Consensus 325 t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~---~~a~ka~~llg~~~~~~~~al~~priKvg~ 401 (1930)
T KOG0161|consen 325 TDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNT---EVADKACHLLGINVEEFLKALLRPRIKVGR 401 (1930)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCc---hHHHHHHHHcCCCHHHHHHHhcccceeccc
Confidence 99999999999999999999999999999999998644444444432 468999999999999999999999999999
Q ss_pred ceeeccCChhHHhhhHHHHHHHHHHHHHHHHHHhhccccccCCCCCeEeeeeccCCcccCCCCChHHHHHHHhHHHHHHH
Q 000484 316 EVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQH 395 (1464)
Q Consensus 316 e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNE~Lq~~ 395 (1464)
+-+.+..+.+|+..+..+|||++|+|||.|+|.+||.+|.......+|||||||+|||+|+.||||||||||+||||||+
T Consensus 402 e~v~k~q~~~q~~~~v~alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqf 481 (1930)
T KOG0161|consen 402 EWVSKAQNVEQVLFAVEALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQF 481 (1930)
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999987767789999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHhhhcCcccccccc-cChHHHHHHhhcCCCcccccccccccCCCCchHHHHHHHHHHh-cCCCCccCCC
Q 000484 396 FNQHVFKMEQEEYTKEEINWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTF-KSNKRFIKPK 473 (1464)
Q Consensus 396 f~~~~f~~eq~~y~~EgI~~~~i~~-~dn~~~l~li~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~-~~~~~~~~~~ 473 (1464)
||+|+|.+||++|.+|||.|.+|+| .|=+||||||++ |.||+++|||||++|++||.+|++||...| ++|+.|.+|+
T Consensus 482 Fnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~k 560 (1930)
T KOG0161|consen 482 FNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKFQKPK 560 (1930)
T ss_pred hcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccccCcc
Confidence 9999999999999999999999999 588999999995 559999999999999999999999999999 8999999997
Q ss_pred --CCCCCeEEEeccceeeeechhhhhhcccccHHHHHHHHhhCCchhHhhcCCCCCC-----------CccCCCCCccch
Q 000484 474 --LSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPE-----------ESSKSSKFSSIG 540 (1464)
Q Consensus 474 --~~~~~F~I~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~-----------~~~~~~~~~tv~ 540 (1464)
....+|.|.||||+|.|++.||++||+|+++..++++|..|++++|+.||.+... ...|++.|.||+
T Consensus 561 ~~~~~~~F~l~HyaG~V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~~~~~~~~~~~~K~g~F~Tvs 640 (1930)
T KOG0161|consen 561 GKKAEAHFALVHYAGTVDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAAAAKGGEALKKTKKGSFRTVS 640 (1930)
T ss_pred cccchhhhheeeecceeccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccchhhhhhhhhcccCCcchhhHH
Confidence 4568999999999999999999999999999999999999999999999987211 133455678999
Q ss_pred HHHHHHHHHHHHHhccCCCeEEEeccCCCCCCCCCCChhhHHHhhcccChhhHHHHHhhcCCCccChHHHHHhhhccCCC
Q 000484 541 SRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPD 620 (1464)
Q Consensus 541 ~~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~ 620 (1464)
..++.||+.||++|++|.|||||||.||..|.|+.+|.+.|+.||||.||||+|||.|.|||.|++|.+|..||.++.|.
T Consensus 641 ~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~ 720 (1930)
T KOG0161|consen 641 QLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAAD 720 (1930)
T ss_pred HHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999955554
Q ss_pred CC-CCCCchHHHHHHHHHhcCC--CCceeccceeeccchhhHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000484 621 VL-DGNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTYIARKEFIALRKAAI 697 (1464)
Q Consensus 621 ~~-~~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r~~~l~~~a~~IQ~~~R~~l~Rk~~~~~r~aai 697 (1464)
.. .+..|.+.+|..++..+.. .-|++|.||||||+|+++.||.+|+..+....+.+|..+|||++|+.|.+.
T Consensus 721 ~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr----- 795 (1930)
T KOG0161|consen 721 EPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKR----- 795 (1930)
T ss_pred hccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 33 3356779999999998754 369999999999999999999999998887766666666666666555332
Q ss_pred HhhhhhhhhhhhhHhHHHhhhHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 698 VLQSYWRGILACKLYEQLRREAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLR 777 (1464)
Q Consensus 698 ~iQ~~~Rg~laR~~~~~~r~~~AAi~IQ~~~R~~~~Rr~y~~lr~a~i~IQs~~Rg~laRk~~~~lr~~~aAi~IQ~~~R 777 (1464)
..+..|+.+||+.+|.|...+.|.+.+- |.
T Consensus 796 -----------------~~~~~ai~~iQ~N~r~~~~lr~w~W~~L-----------f~---------------------- 825 (1930)
T KOG0161|consen 796 -----------------LQQLDAIKVIQRNIRAYLKLRTWPWWRL-----------FT---------------------- 825 (1930)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHhhccCHHHHH-----------HH----------------------
Confidence 1244678889999999988777765332 10
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 778 RHTACSYYKSLKKAAVITQCGWRRRVARRELR----NLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEK 853 (1464)
Q Consensus 778 ~~~~rr~~~~~~~a~~~iQs~~R~~~arkel~----~lk~~a~e~~~l~~~~~~Le~~~~el~~~l~~e~~~~~~le~~k 853 (1464)
+++..+......-+......++. .+...+.....+.....++..+..+++..++.++...++.++.
T Consensus 826 ---------kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~- 895 (1930)
T KOG0161|consen 826 ---------KVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEEL- 895 (1930)
T ss_pred ---------HHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 00000000000000000011111 2233334445555666677777777777777666555544333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 854 AQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEA 933 (1464)
Q Consensus 854 ~~e~~~L~~~~~eLe~~lee~~~~l~~e~e~l~~~~ee~~~~~~e~~~l~~~~~~~~~Le~e~~~lk~el~~le~~~~~l 933 (1464)
...+.....+++.++.++..++..+.+.......+..+.. ..++..++.+++++..+.+++.++...+.+++++
T Consensus 896 ---~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~---~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l 969 (1930)
T KOG0161|consen 896 ---LERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLE---QEVQELKEQLEELELTLQKLELEKNAAENKLKNL 969 (1930)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333322211111111000 1122234455555555555555555555555555
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000484 934 RKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVI 982 (1464)
Q Consensus 934 e~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L 982 (1464)
++++...++.+.++.++.+.+|+.+.++.++++..++++.++.....++
T Consensus 970 ~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kl 1018 (1930)
T KOG0161|consen 970 EEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKL 1018 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555444444444444333333
No 18
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=1.4e-171 Score=1622.83 Aligned_cols=658 Identities=53% Similarity=0.866 Sum_probs=616.7
Q ss_pred CCCCCCCCcHHHHHHHHHHhccCcceeecCCeeEEecCCCCCCCCCCHHHHHHhhccccCCCCchHHHHHHHHHHHHHhc
Q 000484 1 MTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINE 80 (1464)
Q Consensus 1 ~~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~ 80 (1464)
|+.|++|||++||++|+.||.++.||||+|++|||||||+++| +|++++++.|+++..+++|||||+||++||++|.++
T Consensus 5 l~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~ 83 (679)
T cd00124 5 LASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLP-NYGPETIRKYRGKSRSELPPHVFAIADRAYRNMLRD 83 (679)
T ss_pred hhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 6889999999999999999999999999999999999999998 799999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCCCCCccHHHHHhhhchHHHhhcCCcccCCCCCCCccceEEEEEcCC
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKN 160 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~sn~ileaFGnAkT~~N~nSSRfgk~~~l~f~~~ 160 (1464)
++||||||||||||||||++|++|+||+.+++.. ...++++|+++||||||||||||++||||||||||++|+||.+
T Consensus 84 ~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f~~~ 160 (679)
T cd00124 84 RRNQSIIISGESGAGKTENTKLIMKYLASLAGSN---DTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDET 160 (679)
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHHHhccCCC---cchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEEECCC
Confidence 9999999999999999999999999999997643 3579999999999999999999999999999999999999999
Q ss_pred CCccceeEEEeecccccccccCCCCCcceeeccccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHhh
Q 000484 161 GRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRRA 239 (1464)
Q Consensus 161 g~i~ga~i~~ylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~~~~a 239 (1464)
|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++++|+||++++|..++++||+++|.+++.|
T Consensus 161 g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~a 240 (679)
T cd00124 161 GKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEELKEA 240 (679)
T ss_pred CcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 6889999999999999999999999888999999999999999
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhcCeeEEecCCCCc--cccccccchhHHHHHHHhcCCCHHHHHHHHhhcccccCCce
Q 000484 240 MDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADS--SVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEV 317 (1464)
Q Consensus 240 l~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~--~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~e~ 317 (1464)
|++|||+++++.+||+|||||||||||+|.+..+.+. +.+. +...++.+|.||||++++|.++|+++++.++++.
T Consensus 241 l~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~ 317 (679)
T cd00124 241 LKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVK---NTEVLSKAAELLGLDPEELEEALTYKVTKVGGEV 317 (679)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecC---CHHHHHHHHHHhCCCHHHHHHHhhccEEEeCCce
Confidence 9999999999999999999999999999987543332 3333 3457999999999999999999999999999999
Q ss_pred eeccCChhHHhhhHHHHHHHHHHHHHHHHHHhhccccccCCCCCeEeeeeccCCcccCCCCChHHHHHHHhHHHHHHHHH
Q 000484 318 ITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFN 397 (1464)
Q Consensus 318 ~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNE~Lq~~f~ 397 (1464)
+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||||||||||+||++|+
T Consensus 318 ~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~ 397 (679)
T cd00124 318 ITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFN 397 (679)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccCCCCCHHHHhcccchHHHHHHHH
Confidence 99999999999999999999999999999999999998876778899999999999999999999999999999999999
Q ss_pred HHHHHHhHHHhhhcCcccccccccChHHHHHHhhcCCCcccccccccccCCCCchHHHHHHHHHHhcCCCCccC-CCCCC
Q 000484 398 QHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIK-PKLSR 476 (1464)
Q Consensus 398 ~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~-~~~~~ 476 (1464)
+++|+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|+++|++|++||.+.+++|++|.. ++...
T Consensus 398 ~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~~~~~ 477 (679)
T cd00124 398 QHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAKKNAP 477 (679)
T ss_pred HHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988644 44456
Q ss_pred CCeEEEeccceeeeechhhhhhcccccHHHHHHHHhhCCchhHhhcCCCCCCC-----------ccCCCCCccchHHHHH
Q 000484 477 TSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEE-----------SSKSSKFSSIGSRFKL 545 (1464)
Q Consensus 477 ~~F~I~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~-----------~~~~~~~~tv~~~f~~ 545 (1464)
..|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+..... ..+..+.+||+++|+.
T Consensus 478 ~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~ 557 (679)
T cd00124 478 TEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTGSTSSKGKKKKGQTVGSQFRT 557 (679)
T ss_pred CceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccccccccccccccCCCcHHHHHHH
Confidence 89999999999999999999999999999999999999999999999863211 1122366899999999
Q ss_pred HHHHHHHHhccCCCeEEEeccCCCCCCCCCCChhhHHHhhcccChhhHHHHHhhcCCCccChHHHHHhhhccCCCCCCCC
Q 000484 546 QLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGN 625 (1464)
Q Consensus 546 ~l~~L~~~l~~t~~h~irCIkpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~~~ 625 (1464)
||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+++|||+|++|++|+.||++|++......
T Consensus 558 qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~~~~~ 637 (679)
T cd00124 558 SLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDLLEKV 637 (679)
T ss_pred HHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765433
Q ss_pred CchHHHHHHHHHhcCC--CCceeccceeeccchhhHHHHHHH
Q 000484 626 YDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 665 (1464)
Q Consensus 626 ~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 665 (1464)
....+.|+.++..+++ ++|++|+||||||++++..||..|
T Consensus 638 ~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 638 SLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred CCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 3344459999998876 489999999999999999999764
No 19
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=1e-168 Score=1448.93 Aligned_cols=730 Identities=41% Similarity=0.694 Sum_probs=661.6
Q ss_pred CCCCCCCcHHHHHHHHHHhccCcceeecCCeeEEecCCCCCCCCCCHHHHHHhhccccCCCCchHHHHHHHHHHHHHhcC
Q 000484 2 TKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEG 81 (1464)
Q Consensus 2 ~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~ 81 (1464)
+.|-||||+.+|+|++.||..|.||||+.+||||||||..++.+|+++.+..|+|+.+|.+||||||||+.|||.|...+
T Consensus 63 C~Lm~LNEATlL~Nik~RY~k~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k 142 (1259)
T KOG0163|consen 63 CELMHLNEATLLNNIKLRYYKDKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYK 142 (1259)
T ss_pred cceeeccHHHHhhhhhhhhccCchhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHh
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCCCCCccHHHHHhhhchHHHhhcCCcccCCCCCCCccceEEEEEcCCC
Q 000484 82 KSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKNG 161 (1464)
Q Consensus 82 ~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~sn~ileaFGnAkT~~N~nSSRfgk~~~l~f~~~g 161 (1464)
.+|||||||||||||||++|++++||+.--|+ +..|+++|+.+||||||||||||+||+||||||||++|||+.+|
T Consensus 143 ~SQSIIVSGESGAGKTEstK~vLrYLces~gs----ag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~ 218 (1259)
T KOG0163|consen 143 LSQSIIVSGESGAGKTESTKAVLRYLCESWGS----AGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKG 218 (1259)
T ss_pred hcccEEEecCCCCCcchhHHHHHHHHHhccCC----CCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCC
Confidence 99999999999999999999999999986544 35799999999999999999999999999999999999999999
Q ss_pred CccceeEEEeecccccccccCCCCCcceeeccccc-CChhHHhhcCCCCCCCCccccCCCc-------------------
Q 000484 162 RISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNC------------------- 221 (1464)
Q Consensus 162 ~i~ga~i~~ylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~------------------- 221 (1464)
.++|+-+..||||||||+.|+.+|||||||||||| ++++.++.|.|+.|++|+||+.|-.
T Consensus 219 ~VvGGyvSHYLLEkSRiC~Qaa~ERNYHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~nr~S~ 298 (1259)
T KOG0163|consen 219 QVVGGYVSHYLLEKSRICRQAAEERNYHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPGNRKSK 298 (1259)
T ss_pred ceechhhhHHHHHHhHHHHhhhcccchhHHHHHHcCCCHHHHHHhccCCchhhhHHhcchhhhccCcchhhcCcccccCc
Confidence 99999999999999999999999999999999999 7889999999999999999985411
Q ss_pred -------cccCCCCcHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHhcCeeEEecCC--CCccccccccchhHHHHHH
Q 000484 222 -------YALDGVDDTEEYLATRRAMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEE--ADSSVIKDEKSRFHLNTTA 292 (1464)
Q Consensus 222 -------~~~~~~~d~~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a 292 (1464)
..-+-+||..+|..+..||..+|++++|...||+++|||||||||+|.+..+ ..+|.+.+. +...|..+|
T Consensus 299 ~~~~~~~~kD~iidD~~dF~rl~~Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n~-seqsL~~~a 377 (1259)
T KOG0163|consen 299 NHQQKGSLKDPIIDDYQDFHRLEKALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSNG-SEQSLTIAA 377 (1259)
T ss_pred cccccCcccCcccccHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceecccC-chhhHHHHH
Confidence 1112368999999999999999999999999999999999999999987542 456777664 556899999
Q ss_pred HhcCCCHHHHHHHHhhcccccC-----CceeeccCChhHHhhhHHHHHHHHHHHHHHHHHHhhccccccCCCCCeEeeee
Q 000484 293 ELLKCDAKSLEDALINRVMVTP-----EEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVL 367 (1464)
Q Consensus 293 ~lLgv~~~~L~~~l~~~~~~~~-----~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiL 367 (1464)
.|||+|+++|...||.|.+.+. |..|.+||.+.+|..+||||||++|++||||||.+||+++.-. .+..|||||
T Consensus 378 ~LLGld~~elr~~L~aRvMqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe-~St~fiGVL 456 (1259)
T KOG0163|consen 378 ELLGLDQTELRTGLCARVMQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFE-KSTFFIGVL 456 (1259)
T ss_pred HHhCCCHHHHHHHHHHHHHHhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccccc-cccceeEEE
Confidence 9999999999999999998653 4578999999999999999999999999999999999998543 467899999
Q ss_pred ccCCcccCCCCChHHHHHHHhHHHHHHHHHHHHHHHhHHHhhhcCcccccccccChHHHHHHhhcCCCcccccccccccC
Q 000484 368 DIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMF 447 (1464)
Q Consensus 368 Di~GFE~f~~NsfeQlcINyaNE~Lq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~~~Gil~lLdee~~~ 447 (1464)
||.|||-|.+||||||||||+|||||+|||+.+++.||+.|.+||++...|+|.||++||+|||.|..|||+|||||.++
T Consensus 457 DiAGFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEakl 536 (1259)
T KOG0163|consen 457 DIAGFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKL 536 (1259)
T ss_pred eeccceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhcCCCCccCCCCC----------CCCeEEEeccceeeeechhhhhhcccccHHHHHHHHhhCCch
Q 000484 448 PKSTHETFAQKLYQTFKSNKRFIKPKLS----------RTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCP 517 (1464)
Q Consensus 448 ~~~~d~~~~~kl~~~~~~~~~~~~~~~~----------~~~F~I~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~ 517 (1464)
|+.+++.|....++.+++|-+..-|+.+ ...|.|+||||.|.|++..|+|||.|.+...+..|+..|+++
T Consensus 537 P~~s~qhFT~~vHe~~k~HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ 616 (1259)
T KOG0163|consen 537 PKPSYQHFTARVHESNKNHFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNP 616 (1259)
T ss_pred CCcchHHHHHHHHHhhhcceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccch
Confidence 9999999999999999998887777643 357999999999999999999999999999999999999999
Q ss_pred hHhhcCCCCCCCccC--CC--CCccchHHHHHHHHHHHHHhccCCCeEEEeccCCCCCCCCCCChhhHHHhhcccChhhH
Q 000484 518 FVSGLFPPLPEESSK--SS--KFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEA 593 (1464)
Q Consensus 518 ~v~~lf~~~~~~~~~--~~--~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~~~~fd~~~v~~QLr~~gvle~ 593 (1464)
|+.+||++....+.+ .+ ++-|||++|+.||..||+.|++|..|||||||||....|+.||...++.||.|+|+...
T Consensus 617 ll~sLF~S~s~t~a~~~~gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SV 696 (1259)
T KOG0163|consen 617 LLVSLFPSGSSTSAKQTRGKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISV 696 (1259)
T ss_pred HHHHHccCCCCCccccccceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHH
Confidence 999999976433222 22 56799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCccChHHHHHhhhccCCCCCCCCCchHHHHHHHHHhcCCC--CceeccceeeccchhhHHHHHHHHHhhhh
Q 000484 594 IRISCAGYPTRRTFYEFLHRFGVLAPDVLDGNYDDKVACEKILDKMGLK--GYQIGKTKVFLRAGQMAELDARRAEVLGN 671 (1464)
Q Consensus 594 iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r~~~l~~ 671 (1464)
++++..|||+|..|.|.+.-|+-.+|+.+. ..|++..|+.+...+|++ +|+||.||||||.|-.+..+++....-..
T Consensus 697 L~LMq~GyPSR~~F~dLYamYkk~lPpkLa-rLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~ 775 (1259)
T KOG0163|consen 697 LELMQHGYPSRTSFADLYAMYKKVLPPKLA-RLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPET 775 (1259)
T ss_pred HHHHhcCCCccccHHHHHHHHHhhCCHhhh-cCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHH
Confidence 999999999999999999999988887655 368999999999999885 89999999999999999999988777777
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHhHHHhhhHHHHHHHHHHHHHHHHHhhHHHHhHHHHH
Q 000484 672 AARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKLYEQLRREAAALKIQKNFHSYTARTSYLTARSSAIQL 747 (1464)
Q Consensus 672 ~a~~IQ~~~R~~l~Rk~~~~~r~aai~iQ~~~Rg~laR~~~~~~r~~~AAi~IQ~~~R~~~~Rr~y~~lr~a~i~I 747 (1464)
.+..|++ +..|+.|.+|++...++..+-..- .+- .-+..+++++|+++|||++|+++........++
T Consensus 776 m~~lv~k-Vn~WLv~sRWkk~q~~a~sVIKLk----NkI----~yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~ 842 (1259)
T KOG0163|consen 776 MLELVAK-VNKWLVRSRWKKSQYGALSVIKLK----NKI----IYRAECVLKAQRIARGYLARKRHRPRIAGIRKI 842 (1259)
T ss_pred HHHHHHH-HHHHHHHhHHHHhhhhhhheeehh----hHH----HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Confidence 7777765 678999999988776665432211 111 124467889999999999999987655444333
No 20
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=7.3e-171 Score=1608.25 Aligned_cols=657 Identities=31% Similarity=0.497 Sum_probs=586.9
Q ss_pred CCCCCCCCcHHHHHHHHHHhccCcceeecCCeeEEecCCCCCCCCCCHHHHHHhhccccCCCCchHHHHHHHHHHHHHhc
Q 000484 1 MTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINE 80 (1464)
Q Consensus 1 ~~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~ 80 (1464)
|+.|++|||++|||+|+.||.+|.||||+|++|||||||+.+| +|++++++.|+++..+++|||||+||+.||+.|..+
T Consensus 5 l~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~-iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~ 83 (767)
T cd01386 5 LASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLA-LYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRALLET 83 (767)
T ss_pred hhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCC-CCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHc
Confidence 7899999999999999999999999999999999999999996 999999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCCCCCccHHHHHhhhchHHHhhcCCcccCCCCCCCccceEEEEEcCC
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKN 160 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~sn~ileaFGnAkT~~N~nSSRfgk~~~l~f~~~ 160 (1464)
++||||||||||||||||++|+||+|||.+++..+. ..++ ++|+++||||||||||||++||||||||||++|+||.+
T Consensus 84 ~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~-~~~~-e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~~ 161 (767)
T cd01386 84 RRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDG-RVSV-EKVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQT 161 (767)
T ss_pred CCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCc-ccHH-HHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEECCC
Confidence 999999999999999999999999999999764321 1234 57999999999999999999999999999999999999
Q ss_pred CCccceeEEEeecccccccccCCCCCcceeeccccc-CChhHHhhcCCCCCCCCccccCCC-ccccCCCCcHHHHHHHHh
Q 000484 161 GRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSN-CYALDGVDDTEEYLATRR 238 (1464)
Q Consensus 161 g~i~ga~i~~ylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~-~~~~~~~~d~~~f~~~~~ 238 (1464)
|.|+||+|.+|||||||||+|++||||||||||||+ ++++++++|+|.++..+.+.+.++ +...+++||+++|.+|+.
T Consensus 162 g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~~~~ 241 (767)
T cd01386 162 GQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSRLQQ 241 (767)
T ss_pred CcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHHHHH
Confidence 999999999999999999999999999999999999 688999999998765543333322 334577899999999999
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHHHhcCeeEEecCCCCccccccccchhHHHHHHHhcCCCHHHHHHHHhhcccccCCc--
Q 000484 239 AMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEE-- 316 (1464)
Q Consensus 239 al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~e-- 316 (1464)
||++|||+++++..||+|||||||||||+|.+.. +.+.+.+ .+.++.||.||||++++|.++|+++++..+++
T Consensus 242 Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~~--~~~~~~~---~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~~~~ 316 (767)
T cd01386 242 AMEVLGISEGEQRAIWRVLAAIYHLGAAGATKVA--GRKQFAR---PEWAQKAAELLGCPLEELSSATFKHTLRGGINQM 316 (767)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhccCceeeecC--CccccCC---HHHHHHHHHHhCCCHHHHHHHhcccEEeecceee
Confidence 9999999999999999999999999999998622 2233333 24699999999999999999999887655432
Q ss_pred -----------eeeccCChhHHhhhHHHHHHHHHHHHHHHHHHhhccccccCCCCCeEeeeeccCCcccCCC------CC
Q 000484 317 -----------VITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTIIGVLDIYGFESFKL------NS 379 (1464)
Q Consensus 317 -----------~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~------Ns 379 (1464)
.++.++++.+|.++||||||+||++||+|||.+||.+|.++.....+||||||||||+|+. ||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~n~~~~~Ns 396 (767)
T cd01386 317 TTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKDRAAT 396 (767)
T ss_pred eccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecccccccccccccCCCC
Confidence 3445678899999999999999999999999999999988766678999999999999984 89
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHhHHHhhhcCcccccccc-cChHHHHHHhhcCC--------------Cccccccccc
Q 000484 380 FEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEF-VDNQDVLDLIEKKP--------------GGIIALLDEA 444 (1464)
Q Consensus 380 feQlcINyaNE~Lq~~f~~~~f~~eq~~y~~EgI~~~~i~~-~dn~~~l~li~~~~--------------~Gil~lLdee 444 (1464)
|||||||||||||||+|+++||+.||++|.+|||+|+++.+ .||++|||||+++| .|||++||||
T Consensus 397 fEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLDEe 476 (767)
T cd01386 397 FEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEE 476 (767)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhhHh
Confidence 99999999999999999999999999999999999987554 79999999999865 4999999999
Q ss_pred ccCCCCchHHHHHHHHHHhcCCCCccCCC------CCCCCeEEEeccce--eeeechhhhhhccccc-HHHHHHHHhhCC
Q 000484 445 CMFPKSTHETFAQKLYQTFKSNKRFIKPK------LSRTSFTISHYAGE--VTYLADLFLDKNKDYV-VAEHQVLLTASK 515 (1464)
Q Consensus 445 ~~~~~~~d~~~~~kl~~~~~~~~~~~~~~------~~~~~F~I~Hyag~--V~Y~~~~fl~kN~d~~-~~~~~~ll~~S~ 515 (1464)
|++|++||++|++||++.+++|++|.++. .....|+|+||||. |+|+++||+|||||.+ +.+++++|++|+
T Consensus 477 c~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll~~S~ 556 (767)
T cd01386 477 ALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLLQDSK 556 (767)
T ss_pred hcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHHHhCC
Confidence 99999999999999999999988887622 12468999999995 9999999999999975 689999999999
Q ss_pred chhHhhcCCCCCC-------------Ccc----------C--------CCCCccchHHHHHHHHHHHHHhccCCCeEEEe
Q 000484 516 CPFVSGLFPPLPE-------------ESS----------K--------SSKFSSIGSRFKLQLQSLMETLNSTEPHYIRC 564 (1464)
Q Consensus 516 ~~~v~~lf~~~~~-------------~~~----------~--------~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irC 564 (1464)
+++|+.||+.... ..+ + ..+..||+++||.||+.||++|++|+||||||
T Consensus 557 ~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~phfIRC 636 (767)
T cd01386 557 REEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLHFVHC 636 (767)
T ss_pred cHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhccCCeeEEE
Confidence 9999999953210 000 0 01345899999999999999999999999999
Q ss_pred ccCCCCCC----------------------CCCCChhhHHHhhcccChhhHHHHHhhcCCCccChHHHHHhhhccCCCCC
Q 000484 565 VKPNNALR----------------------PAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVL 622 (1464)
Q Consensus 565 IkpN~~~~----------------------~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~ 622 (1464)
||||+.|. |+.||.+.|++||||+||||+|||+|+|||+|++|.+|+.||++|++..+
T Consensus 637 IKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~~~~~ 716 (767)
T cd01386 637 YLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAEGLT 716 (767)
T ss_pred eCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhChhhc
Confidence 99999874 78999999999999999999999999999999999999999999988643
Q ss_pred C------CCCchHHHHHHHHHhcCC--CCceeccceeeccchhhHHHHHHH
Q 000484 623 D------GNYDDKVACEKILDKMGL--KGYQIGKTKVFLRAGQMAELDARR 665 (1464)
Q Consensus 623 ~------~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 665 (1464)
. ...|++++|+.||..+++ ++|++|+||||||++++..||..|
T Consensus 717 ~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 717 KKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred ccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 2 235889999999999876 489999999999999999999865
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=1e-163 Score=1573.37 Aligned_cols=650 Identities=50% Similarity=0.876 Sum_probs=576.2
Q ss_pred CCCCCCCCcHHHHHHHHHHhccCcceeecCCeeEEecCCCCCCCCCCHHHHHHhhccccCCCCchHHHHHHHHHHHHHhc
Q 000484 1 MTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINE 80 (1464)
Q Consensus 1 ~~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~ 80 (1464)
|+.|++|||++||++|+.||..|.||||+|++|||||||+++| +|++++++.|+++..+++|||||+||++||++|+++
T Consensus 4 l~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m~~~ 82 (689)
T PF00063_consen 4 LASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLP-LYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQMLRT 82 (689)
T ss_dssp GGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--S-TSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHHHHH
T ss_pred hhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhh-hhhhhhhhhhhhhccccccCccchhhhccccccccc
Confidence 6889999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCC-CCCccHHHHHhhhchHHHhhcCCcccCCCCCCCccceEEEEEcC
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG-VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDK 159 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~-~~~~~i~~~il~sn~ileaFGnAkT~~N~nSSRfgk~~~l~f~~ 159 (1464)
++||||||||||||||||++|+||+||+.++.... .....++++|+++||||||||||||++|+||||||||++|+||.
T Consensus 83 ~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~f~~ 162 (689)
T PF00063_consen 83 RQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQFDD 162 (689)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEET
T ss_pred ccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEEecc
Confidence 99999999999999999999999999999986543 23467999999999999999999999999999999999999999
Q ss_pred CCCccceeEEEeecccccccccCCCCCcceeeccccc-CChhHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHh
Q 000484 160 NGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYALDGVDDTEEYLATRR 238 (1464)
Q Consensus 160 ~g~i~ga~i~~ylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~~~~ 238 (1464)
+|.++||+|.+||||||||+.+++||||||||||||+ ++++++++|+|.++++|+||+++++..+++.||+++|..++.
T Consensus 163 ~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~l~~ 242 (689)
T PF00063_consen 163 SGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQELKD 242 (689)
T ss_dssp TSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHHHHH
T ss_pred cccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhhhhh
Confidence 9999999999999999999999999999999999999 788899999999999999999999999999999999999999
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHHHhcCeeEEecCCCCccccccccchhHHHHHHHhcCCCHHHHHHHHhhcccccCCcee
Q 000484 239 AMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGEEADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEEVI 318 (1464)
Q Consensus 239 al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~e~~ 318 (1464)
||++|||+++++.+||+|||||||||||+|.+..+.+.+.+.+. ..++.||.||||++++|.++||++++.++++.+
T Consensus 243 al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~ 319 (689)
T PF00063_consen 243 ALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENS---EELQKAAELLGVDSEELEKALTTRTIKVGGETV 319 (689)
T ss_dssp HHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTS---HHHHHHHHHTTS-HHHHHHHHHSEEEESTTSEE
T ss_pred hhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechH---HHHHHhhhhcCCCHHHHHHHHhhcccccccccc
Confidence 99999999999999999999999999999998765555555543 359999999999999999999999999999999
Q ss_pred eccCChhHHhhhHHHHHHHHHHHHHHHHHHhhccccccCC-CCCeEeeeeccCCcccCCCCChHHHHHHHhHHHHHHHHH
Q 000484 319 TRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDP-NSRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFN 397 (1464)
Q Consensus 319 ~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~-~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNE~Lq~~f~ 397 (1464)
++++++++|..+||+|||+||++||+|||++||.+|++.. ....+||||||||||+|..|||||||||||||+||++|+
T Consensus 320 ~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~ 399 (689)
T PF00063_consen 320 TKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQFFN 399 (689)
T ss_dssp EEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccceee
Confidence 9999999999999999999999999999999999998876 678899999999999999999999999999999999999
Q ss_pred HHHHHHhHHHhhhcCcccccccc-cChHHHHHHhhcCCCcccccccccccCCCCchHHHHHHHHHHh-cCCCCccCCC--
Q 000484 398 QHVFKMEQEEYTKEEINWSYIEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTF-KSNKRFIKPK-- 473 (1464)
Q Consensus 398 ~~~f~~eq~~y~~EgI~~~~i~~-~dn~~~l~li~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~-~~~~~~~~~~-- 473 (1464)
+++|+.||++|.+|||+|..++| .||++|||||+++|.|||++|||||++|+++|++|++++...+ ++|+.|.+|+
T Consensus 400 ~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~~~~~ 479 (689)
T PF00063_consen 400 QHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVKPRFS 479 (689)
T ss_dssp HHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEECTSSS
T ss_pred eecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCcccccccc
Confidence 99999999999999999999999 9999999999999999999999999999999999999999999 8889998885
Q ss_pred --CCCCCeEEEeccceeeeechhhhhhcccccHHHHHHHHhhCCchhHhhcCCCCCC--------------C-------c
Q 000484 474 --LSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPE--------------E-------S 530 (1464)
Q Consensus 474 --~~~~~F~I~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~--------------~-------~ 530 (1464)
.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+.... . .
T Consensus 480 ~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (689)
T PF00063_consen 480 RSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQSRSS 559 (689)
T ss_dssp TSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTTSSCC
T ss_pred cccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCccccccccccccccccccccccccccccccccccc
Confidence 3678999999999999999999999999999999999999999999999976421 0 0
Q ss_pred cCCCCCccchHHHHHHHHHHHHHhccCCCeEEEeccCCCCCCCCCCChhhHHHhhcccChhhHHHHHhhcCCCccChHHH
Q 000484 531 SKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEF 610 (1464)
Q Consensus 531 ~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F 610 (1464)
....+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||...|++|||++||+|++||++.|||+|++|.+|
T Consensus 560 ~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~~eF 639 (689)
T PF00063_consen 560 GSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTFDEF 639 (689)
T ss_dssp CGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEHHHH
T ss_pred ccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecchhhh
Confidence 01124589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCCCC----CCchHHHHHHHHHhcCC--CCceeccceeecc
Q 000484 611 LHRFGVLAPDVLDG----NYDDKVACEKILDKMGL--KGYQIGKTKVFLR 654 (1464)
Q Consensus 611 ~~ry~~L~~~~~~~----~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr 654 (1464)
++||++|++..... ..++++.|+.||+.+++ +.|++|+||||||
T Consensus 640 ~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 640 LRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 99999999975532 36889999999999987 6899999999997
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=3.2e-112 Score=1072.53 Aligned_cols=746 Identities=36% Similarity=0.573 Sum_probs=656.3
Q ss_pred CCCCCCCCcHHHHHHHHHHhccCcceeecCCeeEEecCCCCCCCCCCHHHHHHhhccccCCCCchHHHHHHHHHHHHHhc
Q 000484 1 MTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINE 80 (1464)
Q Consensus 1 ~~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~ 80 (1464)
|+.|.+++|+.++++|..||..+.||||+|++|++||||+.+|.+|.+..+..|.++.++++|||||++|+.||++|.+.
T Consensus 66 l~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~~y~~m~~~ 145 (1062)
T KOG4229|consen 66 LAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIADLAYQDMLRE 145 (1062)
T ss_pred HhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhhhhHHHhhhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCCCCCccHHHHHhhhchHHHhhcCCcccCCCCCCCccceEEEEEcCC
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVELQFDKN 160 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~sn~ileaFGnAkT~~N~nSSRfgk~~~l~f~~~ 160 (1464)
..|||||||||||||||++|+++++||+.++. .....++++|+.+||+|||||||+|.+||||||||||+++.|...
T Consensus 146 ~~~QcivisGesgsGktest~l~~~~Ls~Lsq---~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i~~~~~~~ 222 (1062)
T KOG4229|consen 146 KEDQCIVISGESGSGKTESTKLLWQFLSILSQ---GNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYIKVNFRKT 222 (1062)
T ss_pred ccceeEEEecccCCCCchhhHHHHHHHHHHhc---CCCCchhhhhhcchHHHHHhcccCCcccCchhhhhheEEeccccC
Confidence 99999999999999999999999999999983 122568899999999999999999999999999999999999999
Q ss_pred CCccceeEEEeecccccccccCCCCCcceeeccccc-CChhHHhhcCCCCCCCCccccCCCcccc-CCCCcHHHHHHHHh
Q 000484 161 GRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCA-APPEVREKFKLGDPKSFHYLNQSNCYAL-DGVDDTEEYLATRR 238 (1464)
Q Consensus 161 g~i~ga~i~~ylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~l~L~~~~~~~yl~~~~~~~~-~~~~d~~~f~~~~~ 238 (1464)
|.|.||.+.-||||||||+.|+.+||||||||++++ .+.+++..+.|+.+++|.||+++.+..+ ++.++..+|..+..
T Consensus 223 g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~~~~~~l~~ 302 (1062)
T KOG4229|consen 223 GIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDVAQFIRLEA 302 (1062)
T ss_pred CCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999 6778899999999999999999999999 99999999999999
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHHHhcCeeEEecC--CCCccccccccchhHHHHHHHhcCCCHHHHHHHHhhcccccCCc
Q 000484 239 AMDIVGISEEEQDAIFRVVAAILHLGNIEFAKGE--EADSSVIKDEKSRFHLNTTAELLKCDAKSLEDALINRVMVTPEE 316 (1464)
Q Consensus 239 al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~--~~~~~~~~~~~~~~~l~~~a~lLgv~~~~L~~~l~~~~~~~~~e 316 (1464)
||..+||+.+++.+||+++|||||+|||+|..-. ..|.+.+.+ ...+..+|.||+++++.|.++++.++.+++|+
T Consensus 303 ~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~---~~~v~~vA~lL~~~~~~l~~alt~~~~~~~ge 379 (1062)
T KOG4229|consen 303 AMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVEN---EEAVERVACLLLIKEKLLQEALTARVNVTRGE 379 (1062)
T ss_pred HHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhccc---chHHHHHHHHhhcCHHHhhhhhcccceeeehh
Confidence 9999999999999999999999999999997532 234445544 34799999999999999999999999999999
Q ss_pred eeeccCChhHHhhhHHHHHHHHHHHHHHHHHHhhccccccCCC--CCeEeeeeccCCcccCCCCChHHHHHHHhHHHHHH
Q 000484 317 VITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPN--SRTIIGVLDIYGFESFKLNSFEQFCINFTNEKLQQ 394 (1464)
Q Consensus 317 ~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~--~~~~IgiLDi~GFE~f~~NsfeQlcINyaNE~Lq~ 394 (1464)
.+..+++.++|.++||++||.||++||.|||.+||..+.++.. ....||||||||||+|+.|||||+|||||||+||.
T Consensus 380 ~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~Ane~lQ~ 459 (1062)
T KOG4229|consen 380 LLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINLANEQLQY 459 (1062)
T ss_pred hhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999977654 36899999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHhhhcCcccccccccChHHHHHHhhcCCCcccccccccccCCCCchHHHHHHHHHHhcCCCCccCCCC
Q 000484 395 HFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKSNKRFIKPKL 474 (1464)
Q Consensus 395 ~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~~~Gil~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~~ 474 (1464)
+|++|||..||+||..|+|+|..|.|.||.+|+|+|..||.||+.+||||+.+|+++|.+++.|+..+++.+..|..|+.
T Consensus 460 ~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~~~y~~~k~ 539 (1062)
T KOG4229|consen 460 YFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSNNLYVFPKS 539 (1062)
T ss_pred HHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998777777765
Q ss_pred -CCCCeEEEeccceeeeechhhhhhcccccHHHHHHHHhhCCchhHhhcCCCCCCCcc----------------------
Q 000484 475 -SRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLLTASKCPFVSGLFPPLPEESS---------------------- 531 (1464)
Q Consensus 475 -~~~~F~I~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~---------------------- 531 (1464)
....|+|.||||.|.|++.||+|||+|.++.+++.++++|.+.+++.++...+....
T Consensus 540 ~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~~~~~~~~ 619 (1062)
T KOG4229|consen 540 RVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPVPLEVTLRR 619 (1062)
T ss_pred cccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhhhcccccccchhhhcc
Confidence 457999999999999999999999999999999999999998888877653110000
Q ss_pred --------------------------------------------------------------------------C-----
Q 000484 532 --------------------------------------------------------------------------K----- 532 (1464)
Q Consensus 532 --------------------------------------------------------------------------~----- 532 (1464)
+
T Consensus 620 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 699 (1062)
T KOG4229|consen 620 PVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTAT 699 (1062)
T ss_pred ccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccC
Confidence 0
Q ss_pred -----CC--------------C--------------------------------------------------CccchH--
Q 000484 533 -----SS--------------K--------------------------------------------------FSSIGS-- 541 (1464)
Q Consensus 533 -----~~--------------~--------------------------------------------------~~tv~~-- 541 (1464)
.. + ...++.
T Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~t~~~ 779 (1062)
T KOG4229|consen 700 PSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRERVTQLR 779 (1062)
T ss_pred CCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccchhhhHH
Confidence 00 0 000011
Q ss_pred --------------HHHHHHHHHHHHhccCCCeEEEeccCCCCCCCCCCChhhHHHhhcccChhhHHHHHhhcCCCccCh
Q 000484 542 --------------RFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTF 607 (1464)
Q Consensus 542 --------------~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~Gyp~r~~~ 607 (1464)
++......++..+....|.|++|++-|..+....|+...|..|+++.|+++..+++..+++..+++
T Consensus 780 l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~ 859 (1062)
T KOG4229|consen 780 LHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISP 859 (1062)
T ss_pred HHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccc
Confidence 122334446677777788999999999888888999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCCCCCCCCchHHHHHHHHHh--cCCCCceeccceeeccchhhHHHHH-HHHHhhhhHHHHHHHHHhHHH
Q 000484 608 YEFLHRFGVLAPDVLDGNYDDKVACEKILDK--MGLKGYQIGKTKVFLRAGQMAELDA-RRAEVLGNAARIIQRQIRTYI 684 (1464)
Q Consensus 608 ~~F~~ry~~L~~~~~~~~~~~~~~~~~il~~--~~~~~~~iGkTkVFlr~~~~~~Le~-~r~~~l~~~a~~IQ~~~R~~l 684 (1464)
.+|...+++..|.... ......... .+.++++.|++++|+.......++. +..+.....+...|++++...
T Consensus 860 ~~~~~~~~i~~~~~~~------~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~ 933 (1062)
T KOG4229|consen 860 QDSVNQSRIGLPETVD------TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTL 933 (1062)
T ss_pred hhccccccccCCccch------hhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhh
Confidence 9999999988873211 111112221 2446899999999998766544433 222222213677899999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHhH-HHhhhHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHhhHHHHHHH
Q 000484 685 ARKEFIALRKAAIVLQSYWRGILACKLYE-QLRREAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEF 760 (1464)
Q Consensus 685 ~Rk~~~~~r~aai~iQ~~~Rg~laR~~~~-~~r~~~AAi~IQ~~~R~~~~Rr~y~~lr~a~i~IQs~~Rg~laRk~~ 760 (1464)
.++.+.++..+.+.+| |++++.|+... ......+|..+|..|+.+..+..+.-.+.+.+.+|..+++...+..+
T Consensus 934 ~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1008 (1062)
T KOG4229|consen 934 ERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMIF 1008 (1062)
T ss_pred ccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhhH
Confidence 9999999999999999 88888887554 23455688899999999999999999999999999999988766654
No 23
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=99.97 E-value=7.5e-31 Score=311.49 Aligned_cols=263 Identities=17% Similarity=0.340 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHHHHhhhc-CCccccchhhHHHHHHHHHHHHhhhhcCCCCCCccccccccchhhhcccccccCCCCCCCc
Q 000484 1092 TTVFDRIIQTIASAIEVQ-DNNDVLAYWLSNSSTLLLLLQHTLKASGAASLTPQRRRTTSASLFGRMSQGLRASPQSAGL 1170 (1464)
Q Consensus 1092 ~~ll~~ii~~I~~~v~~~-~d~~~layWLSN~~~Ll~~lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1170 (1464)
..||.+++++++.++..+ ++-..|+|||+|.++++||+++.- +
T Consensus 595 i~f~~~~~s~~~~viQeq~~~~~~LaFWmANaSEflhfik~Dr-----------------------------------~- 638 (1629)
T KOG1892|consen 595 IAFVNKMVSMMEGVIQEQKNIAGALAFWMANASEFLHFIKQDR-----------------------------------D- 638 (1629)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHhhcCHHHHHHHHHhcc-----------------------------------c-
Confidence 789999999999999984 555599999999999999999820 0
Q ss_pred ccccCCCcccccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCCCcccccccCCCcchhhhhh
Q 000484 1171 SFLNGRGLGRLDDLRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKDISPLLGLCIQAPRTSRASLVKGRSQANAVAQQ 1250 (1464)
Q Consensus 1171 ~~~~~~~~~~~~~~~~v~~~~p~~~~~qqL~~~~~~iy~~l~~~i~~~l~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~ 1250 (1464)
+..+ .+..+..|..+|+.+|..|+.+++.+|++.+...+.-. .
T Consensus 639 -------------ls~~-----~~~aq~vla~~vq~aFr~LV~clqsel~~~~~afLden-------------------~ 681 (1629)
T KOG1892|consen 639 -------------LSRI-----TLDAQDVLAHLVQMAFRYLVHCLQSELNNYMPAFLDEN-------------------S 681 (1629)
T ss_pred -------------hhhe-----ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------------------c
Confidence 0001 22334558889999999999999999999886655211 0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhhc--CCCCcccchhHHhhchhHHHHHHhhc
Q 000484 1251 ALIAHWQSIVKSLNSYLKTMKVNYVPPFLVRKVFTQIFSFINVQLFNSLLLR--RECCSFSNGEYVKAGLAELEQWCYDA 1328 (1464)
Q Consensus 1251 ~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r--~~~cs~s~G~qIr~nls~Le~W~~~~ 1328 (1464)
...+.+++++.+|+..|.+|+.|+|+..|+.|+|+|||||||+++||+|+.. ..+|+--||--|++.|..||.||+..
T Consensus 682 ~~~~a~gdVlh~L~~aM~llRrCrvNAALTIQLfsqLfH~iN~~~FN~lVt~~~s~~cs~~wGk~~~~rl~~ie~waErq 761 (1629)
T KOG1892|consen 682 LQRPAIGDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNRLVTDPDSGLCSHYWGKIIRQRLGHIEAWAERQ 761 (1629)
T ss_pred ccCccccchHHHhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 1234677899999999999999999999999999999999999999999998 68999999999999999999999999
Q ss_pred ccccccchHHHhhHHHHHHHHHhhcCCCcCCHHHHHHhhCCCCCHHHHHHHHhcCccCCCCCCCCCHHHHHHHHhhhccc
Q 000484 1329 TEEYAGSAWDELKHIRQAVGFLVINQKPKKTLNEITKELCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRVLMTED 1408 (1464)
Q Consensus 1329 ~~~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~c~~Ln~~Ql~kiL~~Y~~d~~e~~~v~~~~i~~v~~~~~~~ 1408 (1464)
|.+++.+| ||..|+||++||+++|....|+..+ ...|.+||+.|+.+||..|++++.| .++|.+++..+..+..+.
T Consensus 762 GlElAAdC--HL~ri~Qaa~lL~~~K~a~ddi~~l-~stCfkLNSLQ~~alLq~~~~~~~e-~~~p~dlvd~v~r~AE~~ 837 (1629)
T KOG1892|consen 762 GLELAADC--HLSRIVQAATLLTMDKYAPDDIPNL-NSTCFKLNSLQLQALLQNYHCAPDE-PFIPTDLVDNVVRVAENT 837 (1629)
T ss_pred cchHhhhc--cHHHHHHHHHHHhccccChhhHHhh-ccchhhcchHHHHHHHhcCCCCCCC-CCCchHHHHHHHHHHHhh
Confidence 98888776 9999999999999997767777667 7899999999999999999999999 499999999998877765
Q ss_pred C-----CCCCCCcccccCCCCCcccccc
Q 000484 1409 S-----NNAVSSSFLLDDDSSIPFTVDD 1431 (1464)
Q Consensus 1409 ~-----~~~~~~~lllD~~~~~Pf~~~~ 1431 (1464)
+ .++..-+|-.+++..+||++|+
T Consensus 838 ADeLtr~DGreV~LEEspeL~LpfLlP~ 865 (1629)
T KOG1892|consen 838 ADELTRSDGREVQLEESPELQLPFLLPE 865 (1629)
T ss_pred hhHhhhccCceeecccCcccccceeecC
Confidence 4 2233456777888899999998
No 24
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.94 E-value=1.6e-27 Score=233.47 Aligned_cols=105 Identities=36% Similarity=0.667 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhHHHHHHhhhcCCCCcccchhHHhhchhHHHHHHhhcccccccchHHHhhHHHHHHHHHhhcCCCcCCHH
Q 000484 1282 KVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEQWCYDATEEYAGSAWDELKHIRQAVGFLVINQKPKKTLN 1361 (1464)
Q Consensus 1282 Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~ 1361 (1464)
|+|+|+|||||+.+||+||.|+++|+|++|+|||+||+.||+||+++|.+ ..++++|.|++||++|||++|.+..|++
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~--~~~~~~l~~l~Qa~~lL~~~k~~~~d~~ 78 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLE--EAAEEHLQPLSQAANLLQLRKSTLQDWD 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTST--TH-HHHCHHHHHHHHHCCC--SSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 89999999999999999999999999999999999999999999999932 2378999999999999999755555554
Q ss_pred HHHHhhCCCCCHHHHHHHHhcCccCCCC
Q 000484 1362 EITKELCPVLSIQQLYRISTMYWDDKYG 1389 (1464)
Q Consensus 1362 ~i~~~~c~~Ln~~Ql~kiL~~Y~~d~~e 1389 (1464)
.+ +++||+|||.||++||++|+||++|
T Consensus 79 ~~-~~~c~~Ln~~Qi~~iL~~Y~~~~~e 105 (105)
T PF01843_consen 79 SL-RETCPSLNPAQIRKILSNYQPDDYE 105 (105)
T ss_dssp HH-CCCTTTS-HHHHHHHHCCB---TTS
T ss_pred HH-HHHcccCCHHHHHHHHHhCCCcCCC
Confidence 45 8999999999999999999999986
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.47 E-value=3.6e-10 Score=152.97 Aligned_cols=626 Identities=15% Similarity=0.130 Sum_probs=291.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhcc--cccCCceeeccCChhHHhhhHHHHHHHHHHHHHHHHHHhhccccccCCCCCeEe
Q 000484 287 HLNTTAELLKCDAKSLEDALINRV--MVTPEEVITRTLDPVAAVGSRDALAKTVYSRLFDWLVDKINSSIGQDPNSRTII 364 (1464)
Q Consensus 287 ~l~~~a~lLgv~~~~L~~~l~~~~--~~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiv~~iN~~l~~~~~~~~~I 364 (1464)
.+..+-..||+++++....+---. +..++=.+...-..++|.-.....|-.+-. |+..=+.-...++..+ ...+.
T Consensus 324 ~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~~-llg~~~~~~~~al~~p--riKvg 400 (1930)
T KOG0161|consen 324 ETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKACH-LLGINVEEFLKALLRP--RIKVG 400 (1930)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCchHHHHHHH-HcCCCHHHHHHHhccc--ceecc
Confidence 466777899999988766553221 112221122111344444444333332211 1111111122222111 12244
Q ss_pred eeeccCCcccCCCCChHHHHHHHhHHHHHHHHHHHHHHHhHHHhhhcCcccccccccChHHHHHHhhcCCCccccccccc
Q 000484 365 GVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEA 444 (1464)
Q Consensus 365 giLDi~GFE~f~~NsfeQlcINyaNE~Lq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~l~li~~~~~Gil~lLdee 444 (1464)
+-.++.|+. -+| .+++=+-|...-...+|. ..-.+...+++|. .+-..+|.+++-...=||..
T Consensus 401 ~e~v~k~q~------~~q--~~~~v~alAk~lYerlF~-wlV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~---- 463 (1930)
T KOG0161|consen 401 REWVSKAQN------VEQ--VLFAVEALAKALYERLFG-WLVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEF---- 463 (1930)
T ss_pred chhhhhcch------HHH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhc----cccCCcceeeeeccccccCc----
Confidence 456666664 334 677777777766666665 4566777888886 34444555555332222222
Q ss_pred ccCCCCchHH----H-HHHHHHHhcCCCCccCC----CCCCCCeEEEeccceeeeechhhhhhcccccHHHHHHHH----
Q 000484 445 CMFPKSTHET----F-AQKLYQTFKSNKRFIKP----KLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQVLL---- 511 (1464)
Q Consensus 445 ~~~~~~~d~~----~-~~kl~~~~~~~~~~~~~----~~~~~~F~I~Hyag~V~Y~~~~fl~kN~d~~~~~~~~ll---- 511 (1464)
.|=+. | .+||.+-| +|.-|+.- +--.-.+..-|| |-=-=.+.+-|+|=. .+..+|
T Consensus 464 -----nSFEQLciNytnEkLQqfF-nh~mFvlEqeeY~~EgIew~fidf-G~Dlq~~idLIEkp~-----Gi~slLdEEc 531 (1930)
T KOG0161|consen 464 -----NSFEQLCINYTNEKLQQFF-NHHMFVLEQEEYQREGIEWDFIDF-GLDLQPTIDLIEKPM-----GILSLLDEEC 531 (1930)
T ss_pred -----CCHHHHHHHHHHHHHHhhh-cchhhhhhHHHHHHhCCceeeecc-ccchhhhHHHHhchh-----hHHHHHHHHH
Confidence 11111 1 13444433 34444321 001235666677 222223334444422 333333
Q ss_pred ---hhCCchhHhhcCCCCCCCccCCCCCccchHHHHHHHHHHHHHhccCCCeEEEeccCCCCCCCCCCChhhHHHhhccc
Q 000484 512 ---TASKCPFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENANIIQQLRCG 588 (1464)
Q Consensus 512 ---~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~~~~fd~~~v~~QLr~~ 588 (1464)
.+|...|+..|+.... ++.++|.... ..+...-+....-+.+ |+|.-+|--.++..-.+..|+.+|+++
T Consensus 532 ~~PkAtd~tf~~kL~~~~~---gk~~~f~~~k---~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s 603 (1930)
T KOG0161|consen 532 VVPKATDKTFLEKLCDQHL---GKHPKFQKPK---GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQS 603 (1930)
T ss_pred hcCCCccchHHHHHHHHhh---ccCccccCcc---cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHHhc
Confidence 2344455555543211 1111221111 2233344444444444 999999988888888889999999999
Q ss_pred ChhhHHHHHhhcCCCccChHHHHHhhhccCCCCCCCC-----CchHHHHHHHHHhcCCCCceeccceeec---cchh---
Q 000484 589 GVLEAIRISCAGYPTRRTFYEFLHRFGVLAPDVLDGN-----YDDKVACEKILDKMGLKGYQIGKTKVFL---RAGQ--- 657 (1464)
Q Consensus 589 gvle~iri~~~Gyp~r~~~~~F~~ry~~L~~~~~~~~-----~~~~~~~~~il~~~~~~~~~iGkTkVFl---r~~~--- 657 (1464)
+ .+.|..--.| +..+..+..++.. ......+. .-.+.....++..+..+.-.|=+--|+. ++|.
T Consensus 604 ~-~~~v~~l~~~---~~~~~~~~~~~~~-~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~ 678 (1930)
T KOG0161|consen 604 T-NKLVSSLFQD---YAGAAAAAKGGEA-LKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDA 678 (1930)
T ss_pred c-cHHHHHHhhh---hhccchhhhhhhh-hcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCH
Confidence 9 8888766655 6667777666654 21111111 1122223333333322211111111111 1111
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHH--HHHHHhhhhhhhhhh-----hhHhHHHhh-------hHHHHH
Q 000484 658 MAELDARRAEVLGNAARIIQRQIRTYIARKEFIALR--KAAIVLQSYWRGILA-----CKLYEQLRR-------EAAALK 723 (1464)
Q Consensus 658 ~~~Le~~r~~~l~~~a~~IQ~~~R~~l~Rk~~~~~r--~aai~iQ~~~Rg~la-----R~~~~~~r~-------~~AAi~ 723 (1464)
...|..+|-.-+-. +++|++ .||-.|-.|...+ -++..=...-.|+.. ++.+..+.. ...-+.
T Consensus 679 ~lvl~QLrcngVLE-gIRicR--~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvF 755 (1930)
T KOG0161|consen 679 PLVLNQLRCNGVLE-GIRICR--QGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVF 755 (1930)
T ss_pred HHHHHHhhccCcHH-HHHHHH--hhCccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeee
Confidence 11222222211111 223322 3554444332221 110000111111111 111111100 000111
Q ss_pred HHHHHHHHHHHHhhHHHHhHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000484 724 IQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFRFRKQT-KAAIIIEAYLRRHTACSYYKSLKKAAVITQCGWRRR 802 (1464)
Q Consensus 724 IQ~~~R~~~~Rr~y~~lr~a~i~IQs~~Rg~laRk~~~~lr~~-~aAi~IQ~~~R~~~~rr~~~~~~~a~~~iQs~~R~~ 802 (1464)
..+-+-+.+.-.+=..+...++.+|+.||||++|+.|.++.++ .|+.+||+++|.|...+.| .|||-+
T Consensus 756 fkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w-----------~W~~Lf 824 (1930)
T KOG0161|consen 756 FKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTW-----------PWWRLF 824 (1930)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----------HHHHHH
Confidence 2222233344444455667788999999999999999887665 5666999999999999988 456666
Q ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 803 VARRELRN-------LKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEAN 875 (1464)
Q Consensus 803 ~arkel~~-------lk~~a~e~~~l~~~~~~Le~~~~el~~~l~~e~~~~~~le~~k~~e~~~L~~~~~eLe~~lee~~ 875 (1464)
..-+.+-. ++..+.++..++....+.+....+++........+...+..+...+.....+ .++..
T Consensus 825 ~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~--------aee~~ 896 (1930)
T KOG0161|consen 825 TKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAE--------AEELL 896 (1930)
T ss_pred HHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH
Confidence 65555443 3333445555555555555555555555444444444443333322222211 12222
Q ss_pred HHHHHHHHHHHHHHHhCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHhhHHHH
Q 000484 876 FRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAE-------EARKACMDAEVRNTELV 948 (1464)
Q Consensus 876 ~~l~~e~e~l~~~~ee~~~~~~e~~~l~~~~~~~~~Le~e~~~lk~el~~le~~~~-------~le~e~~~~e~~~~~l~ 948 (1464)
.++..++..++..+.+.... ++..+++...++.+..++++++..+++.++ +++.+...++..+..+.
T Consensus 897 ~~~~~~k~~le~~l~~~~~~------~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~ 970 (1930)
T KOG0161|consen 897 ERLRAEKQELEKELKELKER------LEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLE 970 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333333333332211 111333344444444444444444444444 44444444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000484 949 KKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 985 (1464)
Q Consensus 949 ~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~q~ 985 (1464)
+++..+++.+..|..+...+++.+.++....+..+.+
T Consensus 971 ~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek 1007 (1930)
T KOG0161|consen 971 EEINSLDENISKLSKEKKELEERIRELQDDLQAEEEK 1007 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666666666666555555555444
No 26
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.66 E-value=3.3e-08 Score=107.77 Aligned_cols=90 Identities=26% Similarity=0.311 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCCCCCccHHHHHhhhchHHHhhc-CCcccCCC
Q 000484 66 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFG-NAKTVRNN 144 (1464)
Q Consensus 66 ifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~sn~ileaFG-nAkT~~N~ 144 (1464)
||+.+..++..|+ ++.|+||+..|+||||||+|..--. ...+--...++ .+++..+..++++ +|.|.+|+
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G~~-------~~~Giip~~~~-~~~~ll~~g~~~R~~~~t~~N~ 78 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEGKR-------EGAGIIPRTVT-DVIDLMDKGNANRTTAATAMNE 78 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCCCC-------CCCCcchHHHH-HHHHHHhhccccccccccCCCC
Confidence 8888889999998 5799999999999999998743210 00000001222 3777888999999 99999999
Q ss_pred CCCCccceEEEEEcCCCCcc
Q 000484 145 NSSRFGKFVELQFDKNGRIS 164 (1464)
Q Consensus 145 nSSRfgk~~~l~f~~~g~i~ 164 (1464)
+|||+..+++|++.......
T Consensus 79 ~SSRsH~i~~i~v~~~~~~~ 98 (186)
T cd01363 79 HSSRSHSVFRIHFGGKNALA 98 (186)
T ss_pred ccCcccEEEEEEEEEeecCC
Confidence 99999999999998655444
No 27
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.43 E-value=0.00013 Score=95.86 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 719 AAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSLKKAAVITQ 796 (1464)
Q Consensus 719 ~AAi~IQ~~~R~~~~Rr~y~~lr~a~i~IQs~~Rg~laRk~~~~lr~~~aAi~IQ~~~R~~~~rr~~~~~~~a~~~iQ 796 (1464)
..++.||+.|||+..|++|.+....+..+|...+|+..|+....-..-.+++.+|+.|+....|..|+.....+..+|
T Consensus 746 ~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq 823 (1463)
T COG5022 746 NIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQ 823 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555444433334455555555555555555555555555555
No 28
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.39 E-value=1.8e-06 Score=109.98 Aligned_cols=87 Identities=32% Similarity=0.385 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 717 REAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSLKKAAVITQ 796 (1464)
Q Consensus 717 ~~~AAi~IQ~~~R~~~~Rr~y~~lr~a~i~IQs~~Rg~laRk~~~~lr~~~aAi~IQ~~~R~~~~rr~~~~~~~a~~~iQ 796 (1464)
...+++.||+.+|+|..|+.|.++|.+++.||+.+||+++|+ ... ...||+.||+.||+|..|+.|.....+++.+|
T Consensus 672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~q 748 (862)
T KOG0160|consen 672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQ 748 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778899999999999999999999999999999999999 333 67899999999999999999999999999999
Q ss_pred hhHHHHHHHH
Q 000484 797 CGWRRRVARR 806 (1464)
Q Consensus 797 s~~R~~~ark 806 (1464)
+.+|++.+|.
T Consensus 749 s~~r~~~~r~ 758 (862)
T KOG0160|consen 749 SGVRAMLARN 758 (862)
T ss_pred HHHHHHHhcc
Confidence 9999999998
No 29
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.37 E-value=5.2e-07 Score=114.50 Aligned_cols=121 Identities=21% Similarity=0.279 Sum_probs=88.7
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHhHHHh--------hhHHHHHHHHHHHHHHHHHhhHHH
Q 000484 669 LGNAARIIQRQIRTYIARKEFIALRKAAIVLQSYWRGILACKLYEQLR--------REAAALKIQKNFHSYTARTSYLTA 740 (1464)
Q Consensus 669 l~~~a~~IQ~~~R~~l~Rk~~~~~r~aai~iQ~~~Rg~laR~~~~~~r--------~~~AAi~IQ~~~R~~~~Rr~y~~l 740 (1464)
...++..||+++|+|..|+.|+-+|.-++.||+++||+..|+.|..+- --.++..+|+.+|||..|......
T Consensus 809 ~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~ 888 (975)
T KOG0520|consen 809 DPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQ 888 (975)
T ss_pred chhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcc
Confidence 457888999999999999999999999999999999999999987542 123556677777777777766666
Q ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 741 RSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSLK 789 (1464)
Q Consensus 741 r~a~i~IQs~~Rg~laRk~~~~lr~~~aAi~IQ~~~R~~~~rr~~~~~~ 789 (1464)
-.+++.||.++|-|..-++.-..+..+|++.||+++|.+.++..|+++.
T Consensus 889 ~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~ 937 (975)
T KOG0520|consen 889 ETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLL 937 (975)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 6666777777776655544444455567777777777777776665544
No 30
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.94 E-value=2.9e-05 Score=99.05 Aligned_cols=116 Identities=25% Similarity=0.273 Sum_probs=93.7
Q ss_pred HHHHHhhhhhhhhhhhhHhHHHhhhHHHHHHHHHHHHHHHHHhhHHHHh----------HHHHHHHHHhhHHHHHHHHHH
Q 000484 694 KAAIVLQSYWRGILACKLYEQLRREAAALKIQKNFHSYTARTSYLTARS----------SAIQLQTGLRAMVARNEFRFR 763 (1464)
Q Consensus 694 ~aai~iQ~~~Rg~laR~~~~~~r~~~AAi~IQ~~~R~~~~Rr~y~~lr~----------a~i~IQs~~Rg~laRk~~~~l 763 (1464)
.++..||..+|||+.|+.|.-.| .-++.||+++|||..|+.|..+-. ++-.+|..+|||..|......
T Consensus 811 ~aa~~iq~~f~~yk~r~~~l~tr--~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~ 888 (975)
T KOG0520|consen 811 AAASRIQKKFRGYKQRKEFLSTR--QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQ 888 (975)
T ss_pred hHHHHhhhhhhhHHhhhhhcccC--CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcc
Confidence 47888999999999999988877 458899999999999999885433 345678888888777766443
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000484 764 KQTKAAIIIEAYLRRHTAC--SYYKSLKKAAVITQCGWRRRVARRELRNLKM 813 (1464)
Q Consensus 764 r~~~aAi~IQ~~~R~~~~r--r~~~~~~~a~~~iQs~~R~~~arkel~~lk~ 813 (1464)
+.||+.||...|-|..- ..|.++.++++.||+.+|...++.+++++..
T Consensus 889 --~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~~ 938 (975)
T KOG0520|consen 889 --ETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLLL 938 (975)
T ss_pred --ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34888999999999877 6788999999999999999999977776654
No 31
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.01 Score=73.08 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=13.6
Q ss_pred cCCCCcccchhHHhhchhHHHHHH
Q 000484 1302 RRECCSFSNGEYVKAGLAELEQWC 1325 (1464)
Q Consensus 1302 r~~~cs~s~G~qIr~nls~Le~W~ 1325 (1464)
.++-.-|=-|.-+.-+=-+.--|+
T Consensus 1008 kKn~sGWWeGELqarGkkrq~GWF 1031 (1118)
T KOG1029|consen 1008 KKNASGWWEGELQARGKKRQIGWF 1031 (1118)
T ss_pred ecCCCccchhhHhhcCCccccccc
Confidence 345566666666655555554553
No 32
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.37 E-value=0.037 Score=71.56 Aligned_cols=145 Identities=19% Similarity=0.257 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 000484 815 ARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPP 894 (1464)
Q Consensus 815 a~e~~~l~~~~~~Le~~~~el~~~l~~e~~~~~~le~~k~~e~~~L~~~~~eLe~~lee~~~~l~~e~e~l~~~~ee~~~ 894 (1464)
..++..++..++.|+.++..|....+.++.....+|..... .+.....+|+++.+.+..-.+|.+...+.......
T Consensus 459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~e----E~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~ 534 (697)
T PF09726_consen 459 KSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAE----ERRQRASLEKQLQEERKARKEEEEKAARALAQAQA 534 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchh
Confidence 35566777777788888777777777666665555554322 23333445555544333222222221111100000
Q ss_pred cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HhhHHHHHHHHHHHHHHHHHHHHH
Q 000484 895 IVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAE-------VRNTELVKKLEDTEEKVGQLQESM 965 (1464)
Q Consensus 895 ~~~e~~~l~~~~~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e-------~~~~~l~~~l~~~e~e~~~L~~e~ 965 (1464)
...| .-+..+....+|+.|+.+|+.++...++.+..++.+..++. .+.+.+...|..++++..+|+..+
T Consensus 535 ~r~e--~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sL 610 (697)
T PF09726_consen 535 TRQE--CAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSL 610 (697)
T ss_pred ccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 0001 01124566778888888888888888888888888775433 234566667777777777766643
No 33
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.31 E-value=0.33 Score=61.54 Aligned_cols=29 Identities=14% Similarity=0.016 Sum_probs=22.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcCCCHHHH
Q 000484 1252 LIAHWQSIVKSLNSYLKTMKVNYVPPFLV 1280 (1464)
Q Consensus 1252 ~~~~~~~il~~L~~~~~~l~~~~v~~~l~ 1280 (1464)
|..++...+..+++.+..+....++++..
T Consensus 897 p~~~lr~sleq~nstl~ll~~~~~~~Ey~ 925 (1243)
T KOG0971|consen 897 PYECLRQSLEQLNSTLNLLATAMQEGEYD 925 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 45678888999999999888877766554
No 34
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.14 E-value=0.89 Score=59.87 Aligned_cols=48 Identities=29% Similarity=0.275 Sum_probs=24.6
Q ss_pred HHHhhHHHHHHHHHhhcCCCcCCHHHHHHhhC---CCCCHHHHHHHHhcCccCC
Q 000484 1337 WDELKHIRQAVGFLVINQKPKKTLNEITKELC---PVLSIQQLYRISTMYWDDK 1387 (1464)
Q Consensus 1337 ~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~c---~~Ln~~Ql~kiL~~Y~~d~ 1387 (1464)
.+.|.|-.+-+.|-|.| ++.++.-| ..+- -+||+.=|.=.|.+|+|..
T Consensus 1169 VDslDPFseGV~FSVrP--pKKSWK~I-~NLSGGEKTLSSLALVFALH~YkPTP 1219 (1293)
T KOG0996|consen 1169 VDSLDPFSEGVMFSVRP--PKKSWKNI-SNLSGGEKTLSSLALVFALHHYKPTP 1219 (1293)
T ss_pred eccCCCcccCceEEeeC--chhhhhhc-ccCCcchhHHHHHHHHHHHHccCCCC
Confidence 34455555555555554 33444333 1111 2566666666666666643
No 35
>PRK11637 AmiB activator; Provisional
Probab=97.13 E-value=0.084 Score=65.53 Aligned_cols=24 Identities=13% Similarity=0.448 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 000484 952 EDTEEKVGQLQESMQRLEEKLCNS 975 (1464)
Q Consensus 952 ~~~e~e~~~L~~e~~~Leekl~~L 975 (1464)
...+.++..|..+..+|+..+..+
T Consensus 229 ~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 229 QKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444433
No 36
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.11 E-value=3 Score=58.83 Aligned_cols=8 Identities=0% Similarity=0.115 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 000484 454 TFAQKLYQ 461 (1464)
Q Consensus 454 ~~~~kl~~ 461 (1464)
++++.+.-
T Consensus 38 ~ildAi~~ 45 (1164)
T TIGR02169 38 NIGDAILF 45 (1164)
T ss_pred HHHHHHHH
Confidence 34444443
No 37
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=97.02 E-value=0.0085 Score=73.42 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 000484 716 RREAAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFRFRKQTKAAIIIEAYLRRHTACSYYKSL------- 788 (1464)
Q Consensus 716 r~~~AAi~IQ~~~R~~~~Rr~y~~lr~a~i~IQs~~Rg~laRk~~~~lr~~~aAi~IQ~~~R~~~~rr~~~~~------- 788 (1464)
+...-++.||+.||||++|.+|++++.+++.|+ +||.+..| ..+..||+.+|++..++.|.+.
T Consensus 694 ~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k---------s~v~el~~~~rg~k~~r~ygk~~~WP~pP 763 (1001)
T KOG0164|consen 694 RLPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLK---------SYVQELQRRFRGAKQMRDYGKSIRWPAPP 763 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHhhhhccccCCCCCCCCCc
Confidence 344567888999999999999999888888888 67743222 3444678888888888887432
Q ss_pred ---HHHHHHHHhhHHHHHHHHHHHH
Q 000484 789 ---KKAAVITQCGWRRRVARRELRN 810 (1464)
Q Consensus 789 ---~~a~~~iQs~~R~~~arkel~~ 810 (1464)
++....+|..+-+|.+.+-++.
T Consensus 764 ~~Lr~~~~~L~~lf~rwra~~~~~~ 788 (1001)
T KOG0164|consen 764 LVLREFEELLRELFIRWRAWQILKS 788 (1001)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555554443
No 38
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.02 E-value=3.6 Score=58.13 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000484 949 KKLEDTEEKVGQLQESMQRLEEKLCNSES 977 (1464)
Q Consensus 949 ~~l~~~e~e~~~L~~e~~~Leekl~~Le~ 977 (1464)
+++..++.++..+..++..++.++.+++.
T Consensus 455 ~~~~~~~~~~~~~~~~l~~~~~~l~~l~~ 483 (1164)
T TIGR02169 455 WKLEQLAADLSKYEQELYDLKEEYDRVEK 483 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 39
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.92 E-value=2.3 Score=56.26 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCc
Q 000484 1263 LNSYLKTMKVNYVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCS 1307 (1464)
Q Consensus 1263 L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs 1307 (1464)
|+.++.++....=.-...-|=|.-...+-...-|+.+|..|.+|.
T Consensus 914 ~~e~L~~l~~~l~~R~~~~qk~r~~~~~~~~~~F~~~l~~R~~sg 958 (1074)
T KOG0250|consen 914 LDELLKALGEALESREQKYQKFRKLLTRRATEEFDALLGKRGFSG 958 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc
Confidence 344444333333333344455555666667777777777766654
No 40
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.91 E-value=0.5 Score=61.02 Aligned_cols=21 Identities=24% Similarity=0.714 Sum_probs=15.6
Q ss_pred ecCCCCCChhHHHHHHHHHHHHhhC
Q 000484 88 VSGESGAGKTETTKMLMRYLAYLGG 112 (1464)
Q Consensus 88 isGeSGaGKT~~~k~~~~yl~~~~~ 112 (1464)
|+|=.|||||- |+.-+|.+=|
T Consensus 30 ITGlNGSGKSN----ILDsICFvLG 50 (1174)
T KOG0933|consen 30 ITGLNGSGKSN----ILDSICFVLG 50 (1174)
T ss_pred hhcCCCCCchH----HHHHHHHHHc
Confidence 58999999995 5666666544
No 41
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.85 E-value=0.56 Score=61.62 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=5.8
Q ss_pred HHHHHHHHHhcC
Q 000484 629 KVACEKILDKMG 640 (1464)
Q Consensus 629 ~~~~~~il~~~~ 640 (1464)
++-...+++.++
T Consensus 161 k~dl~~vv~~f~ 172 (1074)
T KOG0250|consen 161 KEDLDTVVDHFN 172 (1074)
T ss_pred HHHHHHHHHHhC
Confidence 444555555443
No 42
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.82 E-value=0.0014 Score=44.36 Aligned_cols=19 Identities=42% Similarity=0.639 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 000484 719 AAALKIQKNFHSYTARTSY 737 (1464)
Q Consensus 719 ~AAi~IQ~~~R~~~~Rr~y 737 (1464)
.||+.||+.||||++|+.|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4566666666666666655
No 43
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.80 E-value=2 Score=60.62 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000484 945 TELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 985 (1464)
Q Consensus 945 ~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~q~ 985 (1464)
+++...+...+.+...+..++.++++++..++.+...+++.
T Consensus 438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666555543
No 44
>PRK11637 AmiB activator; Provisional
Probab=96.79 E-value=0.15 Score=63.19 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000484 951 LEDTEEKVGQLQESMQRLEEKLCNSESENQVI 982 (1464)
Q Consensus 951 l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L 982 (1464)
+..++.+......++..|+.+...++.....+
T Consensus 221 l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 221 LTGLESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444
No 45
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.71 E-value=1.5 Score=57.87 Aligned_cols=40 Identities=18% Similarity=0.328 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000484 946 ELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 985 (1464)
Q Consensus 946 ~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~q~ 985 (1464)
.+.+++.....++.+..+++.++.++..++.....+++|.
T Consensus 546 ~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqr 585 (1293)
T KOG0996|consen 546 DLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQR 585 (1293)
T ss_pred HHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444455444
No 46
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.71 E-value=3.3 Score=53.10 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000484 945 TELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 985 (1464)
Q Consensus 945 ~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~q~ 985 (1464)
.++++++....+.+-.....+.+.++-+.+|+++++.++.+
T Consensus 507 kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq 547 (1243)
T KOG0971|consen 507 KELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQ 547 (1243)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555555666666666666666666554
No 47
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.70 E-value=0.035 Score=73.61 Aligned_cols=114 Identities=18% Similarity=0.264 Sum_probs=76.5
Q ss_pred HHHHHhHHHHHHHHHHH-----HHHHHHhhhhhhhhhhhhHhHHH----h-hhHHHHHHHHHHHHHHH----HHhhHHHH
Q 000484 676 IQRQIRTYIARKEFIAL-----RKAAIVLQSYWRGILACKLYEQL----R-REAAALKIQKNFHSYTA----RTSYLTAR 741 (1464)
Q Consensus 676 IQ~~~R~~l~Rk~~~~~-----r~aai~iQ~~~Rg~laR~~~~~~----r-~~~AAi~IQ~~~R~~~~----Rr~y~~lr 741 (1464)
.|.-+|+...|..--.+ ..-...+|+..||+..|..+... + ..-....||..|||+.. ...+....
T Consensus 513 ~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~ 592 (1401)
T KOG2128|consen 513 LQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAK 592 (1401)
T ss_pred HHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhh
Confidence 56666776666532111 11223349999999888776542 2 34467789999999874 12223446
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 742 SSAIQLQTGLRAMVARNEFRFRKQ-----TKAAIIIEAYLRRHTACSYYKSLK 789 (1464)
Q Consensus 742 ~a~i~IQs~~Rg~laRk~~~~lr~-----~~aAi~IQ~~~R~~~~rr~~~~~~ 789 (1464)
..++.+|++.||+++|+++.+..+ ..+.+.||+.+|....|..|+.+.
T Consensus 593 ~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~ 645 (1401)
T KOG2128|consen 593 KEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLF 645 (1401)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHh
Confidence 678899999999999998866532 256677888888888888776665
No 48
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.70 E-value=0.98 Score=58.52 Aligned_cols=10 Identities=10% Similarity=0.318 Sum_probs=5.4
Q ss_pred HHHHHHhhcc
Q 000484 343 FDWLVDKINS 352 (1464)
Q Consensus 343 F~wiv~~iN~ 352 (1464)
++|.++.||.
T Consensus 317 l~~~~~tl~~ 326 (1174)
T KOG0933|consen 317 LNLKKETLNG 326 (1174)
T ss_pred HHHHHHHHhh
Confidence 4555555553
No 49
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.66 E-value=0.22 Score=61.62 Aligned_cols=17 Identities=35% Similarity=0.753 Sum_probs=9.0
Q ss_pred HHHHhhcCCCccChHHH
Q 000484 594 IRISCAGYPTRRTFYEF 610 (1464)
Q Consensus 594 iri~~~Gyp~r~~~~~F 610 (1464)
|-|.+.||.+-..|-.|
T Consensus 40 IGiFKVGw~s~rdY~Tf 56 (546)
T PF07888_consen 40 IGIFKVGWSSTRDYYTF 56 (546)
T ss_pred eEEeecCCCchhheeeE
Confidence 44555666655544444
No 50
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=96.63 E-value=0.00072 Score=89.09 Aligned_cols=268 Identities=15% Similarity=0.062 Sum_probs=167.6
Q ss_pred chHHHHHHHHHHHHHhccCCCeEEEeccCCCCCCCCCCChh-hHHHhhcccChhhHHHHHhhcCCCccChHHHHHhhhcc
Q 000484 539 IGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALRPAIFENA-NIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVL 617 (1464)
Q Consensus 539 v~~~f~~~l~~L~~~l~~t~~h~irCIkpN~~~~~~~fd~~-~v~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~L 617 (1464)
++..++-++.+....|-+..+||.|||++|..-.+..++.. .+..++...|...+....+.|+..+..|.+++++++..
T Consensus 644 ~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1062)
T KOG4229|consen 644 VLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNS 723 (1062)
T ss_pred ccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccc
Confidence 34455567777778888899999999999999999999987 89999999999999999999999999999988877744
Q ss_pred CCCCCCCCCchHHHHHHHHHhcCCCCceeccceeeccchhhHHHHHHHHHhh--------------------------hh
Q 000484 618 APDVLDGNYDDKVACEKILDKMGLKGYQIGKTKVFLRAGQMAELDARRAEVL--------------------------GN 671 (1464)
Q Consensus 618 ~~~~~~~~~~~~~~~~~il~~~~~~~~~iGkTkVFlr~~~~~~Le~~r~~~l--------------------------~~ 671 (1464)
.-.......-.+.+|..++.+.+.+.+..+.++++.+......+.-.+.+.. ..
T Consensus 724 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~ 803 (1062)
T KOG4229|consen 724 EYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRKSKLE 803 (1062)
T ss_pred cccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccchhhhHHHHHhhccccCccccccchhhccch
Confidence 3221111112345677777777777778887777775432111110000000 12
Q ss_pred HHHHHHHHHhHHHHHHHHHHH----HHHHHHhhhhhhhhhhhhHhHH---------------------------------
Q 000484 672 AARIIQRQIRTYIARKEFIAL----RKAAIVLQSYWRGILACKLYEQ--------------------------------- 714 (1464)
Q Consensus 672 ~a~~IQ~~~R~~l~Rk~~~~~----r~aai~iQ~~~Rg~laR~~~~~--------------------------------- 714 (1464)
.+..+|+-++....+..+... -...+.+|.-|=|...+.....
T Consensus 804 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~~v~~~~~~ 883 (1062)
T KOG4229|consen 804 SYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPETVDTVADEEFS 883 (1062)
T ss_pred hhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccCCccchhhchhhee
Confidence 234455544444333332221 1244555555555333322110
Q ss_pred -----------------------------HhhhHH---HHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHhhHHHHHHHHH
Q 000484 715 -----------------------------LRREAA---ALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNEFRF 762 (1464)
Q Consensus 715 -----------------------------~r~~~A---Ai~IQ~~~R~~~~Rr~y~~lr~a~i~IQs~~Rg~laRk~~~~ 762 (1464)
+..+.. +...|++++....++.+.++..+.+.+| +++++.|+.-..
T Consensus 884 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~ 961 (1062)
T KOG4229|consen 884 TLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPV 961 (1062)
T ss_pred ecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCcc
Confidence 001111 3345667777777777777777777777 666666654331
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000484 763 -RKQTKAAIIIEAYLRRHTACSYYKSLKKAAVITQCGWRRRVARREL 808 (1464)
Q Consensus 763 -lr~~~aAi~IQ~~~R~~~~rr~~~~~~~a~~~iQs~~R~~~arkel 808 (1464)
.....+++.+|..|+.+..+..+...+++...+|..++...-++..
T Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1008 (1062)
T KOG4229|consen 962 AGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMIF 1008 (1062)
T ss_pred hhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhhH
Confidence 1223456677778888877777777777777777777666554443
No 51
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.59 E-value=0.51 Score=61.32 Aligned_cols=65 Identities=9% Similarity=0.154 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000484 916 VDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQ 980 (1464)
Q Consensus 916 ~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~ 980 (1464)
.+.|-..+..++++...||..+..-..-..+|-..|-+...+++-++..+.+-+.+|.+|+..+.
T Consensus 589 ~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 589 TEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555666666666555444444555556666666666555555555555555555433
No 52
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.53 E-value=1.7 Score=54.39 Aligned_cols=15 Identities=20% Similarity=0.271 Sum_probs=12.0
Q ss_pred HHHHHHHhcCCCHHH
Q 000484 287 HLNTTAELLKCDAKS 301 (1464)
Q Consensus 287 ~l~~~a~lLgv~~~~ 301 (1464)
.|+.|-.++|++.++
T Consensus 319 rl~~Al~~~Glsd~E 333 (1259)
T KOG0163|consen 319 RLEKALKLLGLSDTE 333 (1259)
T ss_pred HHHHHHHhcCCChHH
Confidence 588888999997654
No 53
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.51 E-value=0.002 Score=43.66 Aligned_cols=18 Identities=72% Similarity=1.206 Sum_probs=8.8
Q ss_pred HHHHhhhhhhhhhhhhHh
Q 000484 695 AAIVLQSYWRGILACKLY 712 (1464)
Q Consensus 695 aai~iQ~~~Rg~laR~~~ 712 (1464)
|++.||++|||+++|+.|
T Consensus 3 aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 444455555555555443
No 54
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.51 E-value=0.75 Score=55.26 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000484 931 EEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 984 (1464)
Q Consensus 931 ~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~q 984 (1464)
+.+...+.+-++...++..++...+.++..|..+...|++.+..++.+..+-+.
T Consensus 199 ~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re 252 (420)
T COG4942 199 AKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKARE 252 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444455566666677777777777777777777777755554433
No 55
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.51 E-value=0.46 Score=49.43 Aligned_cols=98 Identities=18% Similarity=0.282 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 855 QEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEAR 934 (1464)
Q Consensus 855 ~e~~~L~~~~~eLe~~lee~~~~l~~e~e~l~~~~ee~~~~~~e~~~l~~~~~~~~~Le~e~~~lk~el~~le~~~~~le 934 (1464)
.++..|+..+..++.+++.+...+..-+..+..... .....+.|...+..|+.+++..+.++....
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~--------------~~~~~E~l~rriq~LEeele~ae~~L~e~~ 100 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK--------------RKSNAEQLNRRIQLLEEELEEAEKKLKETT 100 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------HHHhHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 456666667777777766666555443332221111 112223444555555555555555555554
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000484 935 KACMDAEVRNTELVKKLEDTEEKVGQLQESMQ 966 (1464)
Q Consensus 935 ~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~ 966 (1464)
+++.+++...+...+++..++.+.........
T Consensus 101 ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e 132 (143)
T PF12718_consen 101 EKLREADVKAEHFERKVKALEQERDQWEEKYE 132 (143)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 44444444433333444444443333333333
No 56
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.47 E-value=2.5 Score=59.63 Aligned_cols=8 Identities=13% Similarity=0.397 Sum_probs=3.6
Q ss_pred HHHHHhcC
Q 000484 633 EKILDKMG 640 (1464)
Q Consensus 633 ~~il~~~~ 640 (1464)
..+|..++
T Consensus 125 ~~~l~~~~ 132 (1179)
T TIGR02168 125 QDLFLDTG 132 (1179)
T ss_pred HHHHhccC
Confidence 44444444
No 57
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.42 E-value=0.88 Score=64.19 Aligned_cols=7 Identities=0% Similarity=0.150 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 000484 454 TFAQKLY 460 (1464)
Q Consensus 454 ~~~~kl~ 460 (1464)
+++.-+.
T Consensus 38 ~ll~ai~ 44 (1179)
T TIGR02168 38 NIVDAIR 44 (1179)
T ss_pred HHHHHHH
Confidence 3444433
No 58
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=5.1 Score=50.64 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 816 RETGALKEAKDKLEKRVEELTWRLQFEKQLRTNL 849 (1464)
Q Consensus 816 ~e~~~l~~~~~~Le~~~~el~~~l~~e~~~~~~l 849 (1464)
.+++.|..+...|..++.+.+..+...+.....+
T Consensus 444 ~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~ 477 (1118)
T KOG1029|consen 444 QELETLNFKLQQLSGKLQDVRVDITTQKTEIEEV 477 (1118)
T ss_pred HHHHHHHHHHHHHhhhhhhheeccchHHHHHHHh
Confidence 3444455555555555555544444444333333
No 59
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.28 E-value=9.7 Score=53.59 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=8.1
Q ss_pred HHhhchhHHHHHHhhcc
Q 000484 1313 YVKAGLAELEQWCYDAT 1329 (1464)
Q Consensus 1313 qIr~nls~Le~W~~~~~ 1329 (1464)
.++-.+..++.=+..-|
T Consensus 946 ~~~~~i~~le~~i~~lg 962 (1163)
T COG1196 946 ELEREIERLEEEIEALG 962 (1163)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44455555555444443
No 60
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.26 E-value=0.0035 Score=73.98 Aligned_cols=59 Identities=29% Similarity=0.335 Sum_probs=44.1
Q ss_pred EEecCCCCCCCCCCHHHHHHhhccccCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhHHHH
Q 000484 34 IAINPFQRLPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTK 101 (1464)
Q Consensus 34 iavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k 101 (1464)
-++|||...| |++..-..++. +.+||-|-|. +.-|..-..||+||++||.|||||+-.-
T Consensus 22 k~~Npf~~~p--~s~rY~~ilk~--R~~LPvw~~k-----~~F~~~l~~nQ~~v~vGetgsGKttQiP 80 (699)
T KOG0925|consen 22 KAINPFNGKP--YSQRYYDILKK--RRELPVWEQK-----EEFLKLLLNNQIIVLVGETGSGKTTQIP 80 (699)
T ss_pred hhcCCCCCCc--CcHHHHHHHHH--HhcCchHHhH-----HHHHHHHhcCceEEEEecCCCCccccCc
Confidence 3499999997 88765554443 4677766543 5566677789999999999999997643
No 61
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.21 E-value=0.64 Score=60.03 Aligned_cols=33 Identities=27% Similarity=0.213 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 818 TGALKEAKDKLEKRVEELTWRLQFEKQLRTNLE 850 (1464)
Q Consensus 818 ~~~l~~~~~~Le~~~~el~~~l~~e~~~~~~le 850 (1464)
...+...+..|+.+++.|..++.......++++
T Consensus 403 ~leleke~KnLs~k~e~Leeri~ql~qq~~ele 435 (1195)
T KOG4643|consen 403 HLELEKEHKNLSKKHEILEERINQLLQQLAELE 435 (1195)
T ss_pred HHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566666666666555544444443
No 62
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.14 E-value=4.4 Score=50.61 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000484 956 EKVGQLQESMQRLEEKLCNSESENQVIRQQA 986 (1464)
Q Consensus 956 ~e~~~L~~e~~~Leekl~~Le~en~~L~q~~ 986 (1464)
+++..|..++..+++.+.+-..+..+|..+.
T Consensus 371 ~~ie~L~~el~~~e~~lqEer~E~qkL~~ql 401 (546)
T PF07888_consen 371 DEIEKLSRELQMLEEHLQEERMERQKLEKQL 401 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555443
No 63
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.12 E-value=0.89 Score=49.75 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhhHHHHH
Q 000484 961 LQESMQRLEEKLCNSESENQ 980 (1464)
Q Consensus 961 L~~e~~~Leekl~~Le~en~ 980 (1464)
|.+.+++|+++..+|..+++
T Consensus 162 llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 162 LLESVQRLKDEARDLRQELA 181 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555544443
No 64
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.05 E-value=12 Score=52.69 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=9.4
Q ss_pred CCCHH-HHHHHHhhhc
Q 000484 1392 SVSSE-VISSMRVLMT 1406 (1464)
Q Consensus 1392 ~v~~~-~i~~v~~~~~ 1406 (1464)
.||++ ++..|+.++.
T Consensus 1066 ~lP~e~~~~~l~~l~~ 1081 (1201)
T PF12128_consen 1066 ELPSEEYVNALRELLD 1081 (1201)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 47776 7777655544
No 65
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.02 E-value=0.096 Score=69.73 Aligned_cols=119 Identities=17% Similarity=0.229 Sum_probs=73.4
Q ss_pred HHHhhhhhhhhhhhhHhHHHhhhHH---HHHHHHHHHHHHHHHhhHHH-------HhHHHHHHHHHhhHHH--HHHHHHH
Q 000484 696 AIVLQSYWRGILACKLYEQLRREAA---ALKIQKNFHSYTARTSYLTA-------RSSAIQLQTGLRAMVA--RNEFRFR 763 (1464)
Q Consensus 696 ai~iQ~~~Rg~laR~~~~~~r~~~A---Ai~IQ~~~R~~~~Rr~y~~l-------r~a~i~IQs~~Rg~la--Rk~~~~l 763 (1464)
-+..|+..||..-|.....+-...+ ..++|+..||+..|..+... --.+.-||+.|||++. -+..-..
T Consensus 510 ~is~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~ 589 (1401)
T KOG2128|consen 510 LISLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLD 589 (1401)
T ss_pred HhhHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHH
Confidence 3446777777776654433221111 13358888888777665432 2245678888888874 1111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHHHH
Q 000484 764 KQTKAAIIIEAYLRRHTACSYYKSLK-------KAAVITQCGWRRRVARRELRNLKMA 814 (1464)
Q Consensus 764 r~~~aAi~IQ~~~R~~~~rr~~~~~~-------~a~~~iQs~~R~~~arkel~~lk~~ 814 (1464)
-...-++.+|+..|+++.|+.|.+.. .+++.+|+..|....|+.++.+...
T Consensus 590 ~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~~s 647 (1401)
T KOG2128|consen 590 SAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLFTS 647 (1401)
T ss_pred HhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHhcC
Confidence 22356677888888888887764443 4778888888888888887776543
No 66
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.00 E-value=0.98 Score=50.59 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000484 907 EKIESLTAEVDSLKALLLSERQSAEEARKACMDAE 941 (1464)
Q Consensus 907 ~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e 941 (1464)
.+...|+.+...++....+++..+..+.++...++
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333333
No 67
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.98 E-value=1.8 Score=53.38 Aligned_cols=53 Identities=11% Similarity=0.091 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 000484 908 KIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQ 960 (1464)
Q Consensus 908 ~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~ 960 (1464)
.+.+...++.+.+.++..+++..+++...+.+....+..+.-++..++.+...
T Consensus 426 l~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~ 478 (581)
T KOG0995|consen 426 LLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYEL 478 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555554444444444444444444444443333
No 68
>PRK09039 hypothetical protein; Validated
Probab=95.93 E-value=0.63 Score=55.77 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 822 KEAKDKLEKRVEELTWRLQFEKQLRTNL 849 (1464)
Q Consensus 822 ~~~~~~Le~~~~el~~~l~~e~~~~~~l 849 (1464)
.++...++.++.++..-+..++.....+
T Consensus 52 ~~eL~~L~~qIa~L~e~L~le~~~~~~l 79 (343)
T PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDL 79 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444455555555555555444443333
No 69
>PRK02224 chromosome segregation protein; Provisional
Probab=95.88 E-value=2.1 Score=58.53 Aligned_cols=10 Identities=20% Similarity=0.611 Sum_probs=5.7
Q ss_pred eeeccchhhH
Q 000484 650 KVFLRAGQMA 659 (1464)
Q Consensus 650 kVFlr~~~~~ 659 (1464)
-||++.|.+.
T Consensus 132 ~~~i~Qge~~ 141 (880)
T PRK02224 132 CAYVRQGEVN 141 (880)
T ss_pred eeEeeccChH
Confidence 3666666543
No 70
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.86 E-value=0.96 Score=48.39 Aligned_cols=77 Identities=21% Similarity=0.285 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000484 910 ESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQA 986 (1464)
Q Consensus 910 ~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~q~~ 986 (1464)
..++.|++.|+..+..+++....+-.+...++++...+..++..+++++..+..+...+..+..+|-.++..|+.+.
T Consensus 63 K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 63 KALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 34555666666666666666666666666666666666777777777777777777777777777766666666654
No 71
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.85 E-value=1.3 Score=55.66 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 906 TEKIESLTAEVDSLKALLLSERQSAEEARKACMD 939 (1464)
Q Consensus 906 ~~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~ 939 (1464)
.++.++|+++...+...+..+.++.+..+.++..
T Consensus 350 ddk~~eLEKkrd~al~dvr~i~e~k~nve~elqs 383 (1265)
T KOG0976|consen 350 DDKLNELEKKRDMALMDVRSIQEKKENVEEELQS 383 (1265)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344444544444444444444444444444333
No 72
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.81 E-value=1.6 Score=52.08 Aligned_cols=80 Identities=13% Similarity=0.221 Sum_probs=42.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHH
Q 000484 905 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRL----EEKLCNSESENQ 980 (1464)
Q Consensus 905 ~~~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~L----eekl~~Le~en~ 980 (1464)
+..+++.++.++..++.++++.+..+.+++.++...+..++++..++.+++.++..++.....- ..++..|+.+..
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~ 286 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVD 286 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4555666666666666666666666666666655555555555555555555555444333211 124444555444
Q ss_pred HHHH
Q 000484 981 VIRQ 984 (1464)
Q Consensus 981 ~L~q 984 (1464)
.|..
T Consensus 287 ~Le~ 290 (325)
T PF08317_consen 287 ALEK 290 (325)
T ss_pred HHHH
Confidence 4444
No 73
>PRK03918 chromosome segregation protein; Provisional
Probab=95.80 E-value=1.1 Score=61.18 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=15.5
Q ss_pred EEEecCCCCCChhHHHHHH
Q 000484 85 SILVSGESGAGKTETTKML 103 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~ 103 (1464)
..+|+|++|||||+....|
T Consensus 25 ~~~i~G~nG~GKStil~ai 43 (880)
T PRK03918 25 INLIIGQNGSGKSSILEAI 43 (880)
T ss_pred cEEEEcCCCCCHHHHHHHH
Confidence 4679999999999877643
No 74
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.77 E-value=1.4 Score=56.25 Aligned_cols=73 Identities=12% Similarity=0.236 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000484 906 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVR---------NTELVKKLEDTEEKVGQLQESMQRLEEKLCNSE 976 (1464)
Q Consensus 906 ~~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~---------~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le 976 (1464)
..++..++.+.+.+..++...++.+.+|..+++.+.+. +-+..+.++..+++|.+...+...|++++..+.
T Consensus 446 ~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~ 525 (594)
T PF05667_consen 446 LQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLT 525 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777777777777655432 345555666666666666666666666666555
Q ss_pred HH
Q 000484 977 SE 978 (1464)
Q Consensus 977 ~e 978 (1464)
..
T Consensus 526 gk 527 (594)
T PF05667_consen 526 GK 527 (594)
T ss_pred HH
Confidence 53
No 75
>PRK02224 chromosome segregation protein; Provisional
Probab=95.77 E-value=9.3 Score=52.26 Aligned_cols=9 Identities=0% Similarity=0.298 Sum_probs=4.6
Q ss_pred hHHHHHHHH
Q 000484 452 HETFAQKLY 460 (1464)
Q Consensus 452 d~~~~~kl~ 460 (1464)
-.|+++.+.
T Consensus 36 KStil~ai~ 44 (880)
T PRK02224 36 KSSLLEACF 44 (880)
T ss_pred HHHHHHHHH
Confidence 345655544
No 76
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.73 E-value=2 Score=46.09 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 906 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDA 940 (1464)
Q Consensus 906 ~~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~ 940 (1464)
...++.|+.++.++..+.+.+..+..+|-.+...+
T Consensus 101 ~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~L 135 (193)
T PF14662_consen 101 VAEIETLQEENGKLLAERDGLKKRSKELATEKATL 135 (193)
T ss_pred HHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHH
Confidence 45566666666666666666666655554443333
No 77
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.72 E-value=0.26 Score=56.00 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 000484 911 SLTAEVDSLK 920 (1464)
Q Consensus 911 ~Le~e~~~lk 920 (1464)
.|+.++..++
T Consensus 96 ~lE~~l~ea~ 105 (237)
T PF00261_consen 96 ELEQQLKEAK 105 (237)
T ss_dssp HCHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 78
>PRK09039 hypothetical protein; Validated
Probab=95.69 E-value=1.2 Score=53.30 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=5.6
Q ss_pred HHHHhhHHHHHH
Q 000484 793 VITQCGWRRRVA 804 (1464)
Q Consensus 793 ~~iQs~~R~~~a 804 (1464)
++.|.+....+.
T Consensus 38 ~~~q~fLs~~i~ 49 (343)
T PRK09039 38 VVAQFFLSREIS 49 (343)
T ss_pred HHHHHHHHHHHh
Confidence 445554444443
No 79
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.69 E-value=2.3 Score=48.40 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000484 944 NTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIR 983 (1464)
Q Consensus 944 ~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~ 983 (1464)
+..+..++++.+.........+..|+..+..|+.++...+
T Consensus 178 i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k 217 (237)
T PF00261_consen 178 IRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444445555555555544444333
No 80
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.65 E-value=6.2 Score=46.17 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000484 909 IESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSES 977 (1464)
Q Consensus 909 ~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~ 977 (1464)
++..++|+............++....+.+......+....+.+.+-|.+++.|+.+...||.++..++.
T Consensus 212 ~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 212 AQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444344444433333333332222233333334444444444444444444444443
No 81
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.63 E-value=2.1 Score=55.29 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 906 TEKIESLTAEVDSLKALLLSERQSAE 931 (1464)
Q Consensus 906 ~~~~~~Le~e~~~lk~el~~le~~~~ 931 (1464)
...+..++.++..++.++..++..+.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544444444
No 82
>PTZ00014 myosin-A; Provisional
Probab=95.63 E-value=0.018 Score=75.87 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHhhHHHHHH
Q 000484 719 AAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARNE 759 (1464)
Q Consensus 719 ~AAi~IQ~~~R~~~~Rr~y~~lr~a~i~IQs~~Rg~laRk~ 759 (1464)
..+..||++||||++|++|++.+.+++.||+.+||++++++
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677888888888888888888888888888888877764
No 83
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.59 E-value=8.6 Score=49.74 Aligned_cols=10 Identities=40% Similarity=0.448 Sum_probs=5.0
Q ss_pred CCCCCHHHHH
Q 000484 1368 CPVLSIQQLY 1377 (1464)
Q Consensus 1368 c~~Ln~~Ql~ 1377 (1464)
++.||+.||+
T Consensus 934 FS~ls~h~~K 943 (980)
T KOG0980|consen 934 FSSLSLHQLK 943 (980)
T ss_pred cccccHHHHH
Confidence 4455555544
No 84
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.57 E-value=2.5 Score=54.56 Aligned_cols=18 Identities=17% Similarity=0.462 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000484 906 TEKIESLTAEVDSLKALL 923 (1464)
Q Consensus 906 ~~~~~~Le~e~~~lk~el 923 (1464)
.+.+..++.++..++..+
T Consensus 305 ~d~i~~l~~~l~~l~~~i 322 (562)
T PHA02562 305 KDKLKELQHSLEKLDTAI 322 (562)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 85
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.55 E-value=3.5 Score=48.08 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=50.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 905 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEK 971 (1464)
Q Consensus 905 ~~~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leek 971 (1464)
..+++...+.........+.....+++....+++.-++.+.+...+++.+|.+...|+.+...||.-
T Consensus 215 r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~y 281 (499)
T COG4372 215 RTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAY 281 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777777777777777777777778888888888888888877763
No 86
>PRK03918 chromosome segregation protein; Provisional
Probab=95.50 E-value=2.8 Score=57.31 Aligned_cols=14 Identities=14% Similarity=0.093 Sum_probs=7.1
Q ss_pred CCCHHHHHHHHhhh
Q 000484 1392 SVSSEVISSMRVLM 1405 (1464)
Q Consensus 1392 ~v~~~~i~~v~~~~ 1405 (1464)
.+++.....+...+
T Consensus 824 ~lD~~~~~~l~~~l 837 (880)
T PRK03918 824 FLDEERRRKLVDIM 837 (880)
T ss_pred ccCHHHHHHHHHHH
Confidence 45555555554444
No 87
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.46 E-value=2.9 Score=49.86 Aligned_cols=11 Identities=18% Similarity=0.289 Sum_probs=6.3
Q ss_pred ccChHHHHHhh
Q 000484 604 RRTFYEFLHRF 614 (1464)
Q Consensus 604 r~~~~~F~~ry 614 (1464)
+++..+|++--
T Consensus 13 ~isL~~FL~~~ 23 (325)
T PF08317_consen 13 PISLQDFLNMT 23 (325)
T ss_pred CcCHHHHHHHh
Confidence 35666666543
No 88
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.42 E-value=7.4 Score=50.27 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhhcCCCcCCHHHH-HHhhCCCCCHHHHHHHH
Q 000484 1341 KHIRQAVGFLVINQKPKKTLNEI-TKELCPVLSIQQLYRIS 1380 (1464)
Q Consensus 1341 ~~l~Qa~~lLq~~kk~~~~~~~i-~~~~c~~Ln~~Ql~kiL 1380 (1464)
..+++|++-.+.. ....+++ ++.-=-+=+.+||..-.
T Consensus 850 tvLVeaAdkvV~~---~gkfEeLIVas~EIAAsTaQLVaAS 887 (980)
T KOG0980|consen 850 TVLVEAADKVVTG---TGKFEELIVASQEIAASTAQLVAAS 887 (980)
T ss_pred HHHHHHhhhHhcC---CCCcHHHHHhhhHHHHHHHHHHHHH
Confidence 3567788877765 2333442 21111155677877543
No 89
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.40 E-value=7.1 Score=45.24 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHH
Q 000484 925 SERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQE-SMQRLEEKLCNSESENQVIRQQ 985 (1464)
Q Consensus 925 ~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~-e~~~Leekl~~Le~en~~L~q~ 985 (1464)
.+..++..++.+........+.+..+.-++|..+..=++ -+++|-+++..|+.+...|+.+
T Consensus 139 kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 139 KLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEK 200 (310)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444333333333333333333334444333333 2466777777777777777765
No 90
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.34 E-value=8.4 Score=45.70 Aligned_cols=38 Identities=32% Similarity=0.449 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 815 ARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEE 852 (1464)
Q Consensus 815 a~e~~~l~~~~~~Le~~~~el~~~l~~e~~~~~~le~~ 852 (1464)
..+...+......+..++.+++.++..+...+..++.+
T Consensus 67 ~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~e 104 (312)
T PF00038_consen 67 SKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEE 104 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666666666655555555444
No 91
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.28 E-value=0.018 Score=41.31 Aligned_cols=20 Identities=40% Similarity=0.612 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 000484 718 EAAALKIQKNFHSYTARTSY 737 (1464)
Q Consensus 718 ~~AAi~IQ~~~R~~~~Rr~y 737 (1464)
..+|+.||+.||||++|+.|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 35677777777777777766
No 92
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.27 E-value=3.5 Score=46.77 Aligned_cols=72 Identities=13% Similarity=0.066 Sum_probs=33.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000484 905 DTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSE 976 (1464)
Q Consensus 905 ~~~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le 976 (1464)
++..++..+.+...|+..-..+++++..+..-..+++.....+..+..+.+.-+..+..+...+..+...++
T Consensus 146 Dk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 146 DKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444444444544444444
No 93
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.25 E-value=23 Score=50.14 Aligned_cols=32 Identities=25% Similarity=0.243 Sum_probs=17.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 000484 675 IIQRQIRTYIARKEFIALRKAAIVLQSYWRGI 706 (1464)
Q Consensus 675 ~IQ~~~R~~l~Rk~~~~~r~aai~iQ~~~Rg~ 706 (1464)
.|..|+|-.-....+..++..+..++..++..
T Consensus 227 ~i~~W~~~~~~~~~~~~~r~~~~~l~~~~~~l 258 (1201)
T PF12128_consen 227 DIDDWLRDIRASQGFEKVRPEFDKLQQQYRQL 258 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544455556666666665554433
No 94
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=95.21 E-value=3.9 Score=46.72 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=33.7
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000484 935 KACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 985 (1464)
Q Consensus 935 ~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~q~ 985 (1464)
+.+.+.+.+.+-+..+++.++..-..|.+++..|++-+.+++...+.++..
T Consensus 245 k~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pN 295 (561)
T KOG1103|consen 245 KLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPN 295 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcc
Confidence 334444444444555666666667778888888888888888877766543
No 95
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=95.04 E-value=7.8 Score=44.58 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000484 961 LQESMQRLEEKLCNSESENQVIRQQA 986 (1464)
Q Consensus 961 L~~e~~~Leekl~~Le~en~~L~q~~ 986 (1464)
-+.-..+||.++.+|.-|...|-|-.
T Consensus 199 RQ~yI~~LEsKVqDLm~EirnLLQle 224 (401)
T PF06785_consen 199 RQAYIGKLESKVQDLMYEIRNLLQLE 224 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455666777777666666555543
No 96
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.00 E-value=2.5 Score=52.71 Aligned_cols=21 Identities=14% Similarity=0.436 Sum_probs=12.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 000484 678 RQIRTYIARKEFIALRKAAIV 698 (1464)
Q Consensus 678 ~~~R~~l~Rk~~~~~r~aai~ 698 (1464)
...-.|+.|-+|+........
T Consensus 49 DRLA~YIekVR~LEaqN~~L~ 69 (546)
T KOG0977|consen 49 DRLAVYIEKVRFLEAQNRKLE 69 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777766554433
No 97
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.96 E-value=2.2 Score=53.69 Aligned_cols=63 Identities=16% Similarity=0.249 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 911 SLTAEVDSLKALLLSERQSAEEARKACMDAEV---RNTELVKKLEDTEEKVGQLQESMQRLEEKLC 973 (1464)
Q Consensus 911 ~Le~e~~~lk~el~~le~~~~~le~e~~~~e~---~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~ 973 (1464)
..+.+++.|..+.++.+++++.++-.+..++. ..+....+|.+..++.+.+-..+-.++.++.
T Consensus 376 nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s 441 (1265)
T KOG0976|consen 376 NVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLS 441 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 33344444444444444444444444333322 1233334455555555555555555544443
No 98
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.93 E-value=7.4 Score=42.90 Aligned_cols=41 Identities=20% Similarity=0.320 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHH
Q 000484 945 TELVKKLEDTEEKVGQLQESM---QRLEEKLCNSESENQVIRQQ 985 (1464)
Q Consensus 945 ~~l~~~l~~~e~e~~~L~~e~---~~Leekl~~Le~en~~L~q~ 985 (1464)
+++..+|..+-+++.-|+.++ +.|=+.+..|+.|-..|+|.
T Consensus 136 eDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqe 179 (333)
T KOG1853|consen 136 EDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQE 179 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433 22333444555555555554
No 99
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.90 E-value=5.8 Score=43.53 Aligned_cols=70 Identities=27% Similarity=0.305 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000484 908 KIESLTAEVDSLKALLLSERQSAEEARKACMDAEVR----NTELVKKLEDTEEKVGQLQESMQRLEEKLCNSES 977 (1464)
Q Consensus 908 ~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~----~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~ 977 (1464)
+.++|..++..++..+...+.++..+++++.-.... .....++..++..++..+.+++..|..++.+-+.
T Consensus 119 eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 119 EREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346677777777777777777777777766544333 2334445556666666777777777666665443
No 100
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.88 E-value=11 Score=50.56 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhHHHHHHH
Q 000484 965 MQRLEEKLCNSESENQVI 982 (1464)
Q Consensus 965 ~~~Leekl~~Le~en~~L 982 (1464)
++.+++.+..+..|++.+
T Consensus 676 lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 676 LKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444444433
No 101
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=94.84 E-value=0.71 Score=55.51 Aligned_cols=10 Identities=0% Similarity=-0.233 Sum_probs=4.4
Q ss_pred HHHhcCCCHH
Q 000484 1269 TMKVNYVPPF 1278 (1464)
Q Consensus 1269 ~l~~~~v~~~ 1278 (1464)
.++..++|+-
T Consensus 507 sc~R~~~dek 516 (596)
T KOG4360|consen 507 SCRRMISDEK 516 (596)
T ss_pred HHHhhcCchh
Confidence 3444444443
No 102
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.79 E-value=1.4 Score=56.29 Aligned_cols=42 Identities=12% Similarity=0.280 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000484 944 NTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 985 (1464)
Q Consensus 944 ~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~q~ 985 (1464)
......+++.+..++..+..++..-++....|..+..++++.
T Consensus 442 ~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 442 SKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 344555666666666666666666666666666665554443
No 103
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.77 E-value=7.6 Score=55.30 Aligned_cols=21 Identities=33% Similarity=0.475 Sum_probs=17.4
Q ss_pred eEEEecCCCCCChhHHHHHHH
Q 000484 84 NSILVSGESGAGKTETTKMLM 104 (1464)
Q Consensus 84 QsIiisGeSGaGKT~~~k~~~ 104 (1464)
...+|+|++|||||+....|.
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~ 49 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLK 49 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 478999999999998776654
No 104
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.73 E-value=3.5 Score=46.31 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000484 908 KIESLTAEVDSLKALLLSERQSAEEARKACMDAEV 942 (1464)
Q Consensus 908 ~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~ 942 (1464)
+++.++.....+..++..+.+...++++++..+..
T Consensus 97 E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~ 131 (239)
T COG1579 97 EIQIAKERINSLEDELAELMEEIEKLEKEIEDLKE 131 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444443333
No 105
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.72 E-value=2.2 Score=50.94 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 815 ARETGALKEAKDKLEKRVEELTWRLQFEK 843 (1464)
Q Consensus 815 a~e~~~l~~~~~~Le~~~~el~~~l~~e~ 843 (1464)
...+..|+-.+.-||+++++|+.+....+
T Consensus 330 q~~IqdLq~sN~yLe~kvkeLQ~k~~kQq 358 (527)
T PF15066_consen 330 QNRIQDLQCSNLYLEKKVKELQMKITKQQ 358 (527)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHHhhhhh
Confidence 44566777888888999998887766443
No 106
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.69 E-value=3.7 Score=49.86 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000484 949 KKLEDTEEKVGQLQESMQRLEE 970 (1464)
Q Consensus 949 ~~l~~~e~e~~~L~~e~~~Lee 970 (1464)
.+-.++|+++..|++.+..|+.
T Consensus 170 seYSELEEENIsLQKqVs~LR~ 191 (772)
T KOG0999|consen 170 SEYSELEEENISLQKQVSNLRQ 191 (772)
T ss_pred HHHHHHHHhcchHHHHHHHHhh
Confidence 3344455555555554444443
No 107
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.62 E-value=20 Score=46.36 Aligned_cols=36 Identities=11% Similarity=0.067 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000484 906 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAE 941 (1464)
Q Consensus 906 ~~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e 941 (1464)
+..+...-..+.+|+.++.+++...-.+..+..++.
T Consensus 152 k~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt 187 (617)
T PF15070_consen 152 KATASRALSQNRELKEQLAELQDAFVKLTNENMELT 187 (617)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence 333444444455555555555555554444444333
No 108
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.60 E-value=2.4 Score=52.83 Aligned_cols=78 Identities=23% Similarity=0.363 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000484 908 KIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 985 (1464)
Q Consensus 908 ~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~q~ 985 (1464)
....++.++.+++.++..++.+..+.++......+........+.+++.++..++.....+++++..|..+|.+|+.+
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~ 184 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREE 184 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 444555556666666666666666665555555555555555555555565555555555555555555555555544
No 109
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.59 E-value=6.4 Score=46.49 Aligned_cols=52 Identities=12% Similarity=0.233 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 000484 908 KIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVG 959 (1464)
Q Consensus 908 ~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~ 959 (1464)
++..+++++.+...++.....++.+++.++...+..+++...++.+++.++.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443333333333333333333
No 110
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.52 E-value=16 Score=52.11 Aligned_cols=23 Identities=9% Similarity=0.193 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhhhcCCccccch
Q 000484 1095 FDRIIQTIASAIEVQDNNDVLAY 1117 (1464)
Q Consensus 1095 l~~ii~~I~~~v~~~~d~~~lay 1117 (1464)
++++|.-++..+-.+.+.+.+.+
T Consensus 1142 ~n~~~~~~w~~~~~~~~~~~i~~ 1164 (1311)
T TIGR00606 1142 INKIIRDLWRSTYRGQDIEYIEI 1164 (1311)
T ss_pred HHHHHHHHHHHHcCccHHHHhhc
Confidence 44555555544444444444444
No 111
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.49 E-value=0.028 Score=56.39 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=21.4
Q ss_pred EEEecCCCCCChhHHHHHHHHHH
Q 000484 85 SILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~~~yl 107 (1464)
.|+|+|.||||||+.++.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999976
No 112
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.42 E-value=11 Score=44.09 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 854 AQEIAKLQDALQAMQLQVEEANFRI 878 (1464)
Q Consensus 854 ~~e~~~L~~~~~eLe~~lee~~~~l 878 (1464)
...+..|+.++++|..++.+++...
T Consensus 78 re~Nk~L~~Ev~~Lrqkl~E~qGD~ 102 (319)
T PF09789_consen 78 REQNKKLKEEVEELRQKLNEAQGDI 102 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchH
Confidence 3456666666666666666554443
No 113
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.39 E-value=35 Score=48.18 Aligned_cols=29 Identities=38% Similarity=0.659 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000484 949 KKLEDTEEKVGQLQESMQRLEEKLCNSES 977 (1464)
Q Consensus 949 ~~l~~~e~e~~~L~~e~~~Leekl~~Le~ 977 (1464)
.++.+++.+...+.+...+++.++.+.+.
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 488 (1163)
T COG1196 460 DRLKELERELAELQEELQRLEKELSSLEA 488 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444433333
No 114
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.15 E-value=7.6 Score=47.00 Aligned_cols=8 Identities=0% Similarity=0.206 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 000484 862 DALQAMQL 869 (1464)
Q Consensus 862 ~~~~eLe~ 869 (1464)
+.+.+++.
T Consensus 94 ~~I~~~~~ 101 (420)
T COG4942 94 KQIADLNA 101 (420)
T ss_pred hhHHHHHH
Confidence 33333333
No 115
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.13 E-value=5.9 Score=42.46 Aligned_cols=75 Identities=20% Similarity=0.203 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000484 907 EKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQV 981 (1464)
Q Consensus 907 ~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~ 981 (1464)
..+..|..+...+...+..+....+.+..+....+..+..+..+|++.+..-......++.|++.+.+|+..+..
T Consensus 109 s~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~ 183 (205)
T KOG1003|consen 109 SQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEE 183 (205)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHH
Confidence 344455555555555555555555554444444444445555555555555555555555555555555544433
No 116
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.06 E-value=13 Score=48.80 Aligned_cols=62 Identities=13% Similarity=0.160 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000484 921 ALLLSERQSAEEARKACMDA--EVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVI 982 (1464)
Q Consensus 921 ~el~~le~~~~~le~e~~~~--e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L 982 (1464)
.++..++.+++.+++++... ++...++.++++.++.++..+..+...+++++..++.+...+
T Consensus 398 ~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 461 (650)
T TIGR03185 398 KELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEAL 461 (650)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443322 122344444555555555555554444444444444444333
No 117
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=94.03 E-value=0.32 Score=57.48 Aligned_cols=132 Identities=12% Similarity=0.129 Sum_probs=73.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhhc-CCCCcccchhHHhhchhHHHHHHhhccc
Q 000484 1252 LIAHWQSIVKSLNSYLKTMKVNYVPPFLVRKVFTQIFSFINVQLFNSLLLR-RECCSFSNGEYVKAGLAELEQWCYDATE 1330 (1464)
Q Consensus 1252 ~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r-~~~cs~s~G~qIr~nls~Le~W~~~~~~ 1330 (1464)
+...+.+++.+|..++... ...+|+.+..-+....|.+|+..+.+-|+.. -+..+-.--.++...+..+|.++.+...
T Consensus 177 ps~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~~ 255 (311)
T PF04091_consen 177 PSDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSLPV 255 (311)
T ss_dssp --HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-SS
T ss_pred CCHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhCcC
Confidence 4567899999999988543 5679999999999999999999999998754 2445555557888999999999998710
Q ss_pred --ccccchHHHhhHHHHHHHHHhhcCCCcCCHHHHHHhhCCCCCHHHHHHHHhcCc
Q 000484 1331 --EYAGSAWDELKHIRQAVGFLVINQKPKKTLNEITKELCPVLSIQQLYRISTMYW 1384 (1464)
Q Consensus 1331 --~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~c~~Ln~~Ql~kiL~~Y~ 1384 (1464)
.-.+...+.|..++|.++||....-...-...++..-.+.++|..+..||..|+
T Consensus 256 ~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r~~kY~~v~p~~~~~lLeK~k 311 (311)
T PF04091_consen 256 PGNNIPSLRETFAELRQLVDLLLSDDWEEYLDPGIRERKYSRVKPEKAIKLLEKLK 311 (311)
T ss_dssp SS--SSTTGGGGHHHHHHHHHHH---------------------------------
T ss_pred cccccccHHHHHHHHHHHHHHHhcCCHHHHhCccccccccCCCCHHHHHHHHHhcC
Confidence 124566789999999999999863222211136556678999999999988774
No 118
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.76 E-value=44 Score=47.62 Aligned_cols=79 Identities=22% Similarity=0.264 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000484 907 EKIESLTAEVDSLKALLLSERQSAEEARKA----CMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVI 982 (1464)
Q Consensus 907 ~~~~~Le~e~~~lk~el~~le~~~~~le~e----~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L 982 (1464)
..+.+|..++..++..+......++.+... +..+...+..+...+..+...+..+.++...|+.++.+|+......
T Consensus 805 ~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~ 884 (1822)
T KOG4674|consen 805 SRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSA 884 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555554444444444433322 2233333444444555555555556666666666666666666555
Q ss_pred HHH
Q 000484 983 RQQ 985 (1464)
Q Consensus 983 ~q~ 985 (1464)
..+
T Consensus 885 ~~~ 887 (1822)
T KOG4674|consen 885 KTQ 887 (1822)
T ss_pred HHH
Confidence 444
No 119
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=93.68 E-value=13 Score=43.92 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=17.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 905 DTEKIESLTAEVDSLKALLLSERQSAEE 932 (1464)
Q Consensus 905 ~~~~~~~Le~e~~~lk~el~~le~~~~~ 932 (1464)
++..++.|+.|++.++..+.+.++.+.+
T Consensus 251 ~~~hi~~l~~EveRlrt~l~~Aqk~~~e 278 (552)
T KOG2129|consen 251 EKLHIDKLQAEVERLRTYLSRAQKSYQE 278 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777666655554
No 120
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.68 E-value=10 Score=45.45 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=19.9
Q ss_pred HhhcCCCccChHHHHHhhhccCCCCCCCCCchHHHHHHHHHhcC
Q 000484 597 SCAGYPTRRTFYEFLHRFGVLAPDVLDGNYDDKVACEKILDKMG 640 (1464)
Q Consensus 597 ~~~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~il~~~~ 640 (1464)
...|||..+.|..|+ .|+ ..|-+...-.+...++
T Consensus 75 kdlgyrgD~gyqtfL------ypn----~~dlR~ll~fLie~lp 108 (521)
T KOG1937|consen 75 KDLGYRGDTGYQTFL------YPN----INDLRSLLIFLIEKLP 108 (521)
T ss_pred HHcCCCcccchhhee------cCC----cccHHHHHHHHHhhCC
Confidence 457888888887764 333 2344445555555554
No 121
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.67 E-value=9.9 Score=42.05 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 000484 906 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVR 943 (1464)
Q Consensus 906 ~~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~ 943 (1464)
+..+..++.++..++-+.+.++.+...++.+..++...
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666666666666555555443
No 122
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.58 E-value=5.5 Score=52.35 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=15.2
Q ss_pred ccCCCeEEEeccCCCCCCCCC
Q 000484 555 NSTEPHYIRCVKPNNALRPAI 575 (1464)
Q Consensus 555 ~~t~~h~irCIkpN~~~~~~~ 575 (1464)
..|..+||.|=+|.....|..
T Consensus 421 ~~~~Ve~llcT~~~~~~~~~P 441 (717)
T PF10168_consen 421 SPCIVEYLLCTKPLSSSAPNP 441 (717)
T ss_pred CCcceEEEeccCCCCCCCCCC
Confidence 345679999999977765543
No 123
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.58 E-value=19 Score=48.48 Aligned_cols=11 Identities=9% Similarity=0.159 Sum_probs=4.1
Q ss_pred HHHHHHHHHHh
Q 000484 1262 SLNSYLKTMKV 1272 (1464)
Q Consensus 1262 ~L~~~~~~l~~ 1272 (1464)
.|+...+.|..
T Consensus 1025 ~L~qlr~~l~k 1035 (1317)
T KOG0612|consen 1025 ELSQLRTKLNK 1035 (1317)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 124
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=93.55 E-value=0.071 Score=38.20 Aligned_cols=19 Identities=58% Similarity=0.996 Sum_probs=9.4
Q ss_pred HHHHHhhhhhhhhhhhhHh
Q 000484 694 KAAIVLQSYWRGILACKLY 712 (1464)
Q Consensus 694 ~aai~iQ~~~Rg~laR~~~ 712 (1464)
.+++.||++|||+++|+.|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555444
No 125
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.54 E-value=7.8 Score=51.06 Aligned_cols=61 Identities=25% Similarity=0.330 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 817 ETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKE 881 (1464)
Q Consensus 817 e~~~l~~~~~~Le~~~~el~~~l~~e~~~~~~le~~k~~e~~~L~~~~~eLe~~lee~~~~l~~e 881 (1464)
++..++.....+.+.-.+++..++..+...... ..+...|+..++.|..++++.+..+.+.
T Consensus 302 E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~k----e~~~~~Lqsdve~Lr~rle~k~~~l~kk 362 (775)
T PF10174_consen 302 ELEALQTRLETLEEQDSDMRQHIEVLKESLRAK----EQEAEMLQSDVEALRFRLEEKNSQLEKK 362 (775)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555444333322 2335555666666665555555444433
No 126
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=93.42 E-value=28 Score=43.81 Aligned_cols=13 Identities=8% Similarity=-0.018 Sum_probs=6.6
Q ss_pred hHHHHHHHHHhhH
Q 000484 742 SSAIQLQTGLRAM 754 (1464)
Q Consensus 742 ~a~i~IQs~~Rg~ 754 (1464)
..-.++|+.+|-.
T Consensus 413 ~lEkKvqa~~kER 425 (961)
T KOG4673|consen 413 TLEKKVQALTKER 425 (961)
T ss_pred HHHHHHHHHHHhH
Confidence 3334566655543
No 127
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.36 E-value=19 Score=42.55 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=5.1
Q ss_pred ccChHHHHH
Q 000484 604 RRTFYEFLH 612 (1464)
Q Consensus 604 r~~~~~F~~ 612 (1464)
+++..+|++
T Consensus 9 ~isL~dFL~ 17 (312)
T smart00787 9 PISLQDFLN 17 (312)
T ss_pred CccHHHHHH
Confidence 455566654
No 128
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.31 E-value=20 Score=42.89 Aligned_cols=9 Identities=44% Similarity=0.553 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 000484 976 ESENQVIRQ 984 (1464)
Q Consensus 976 e~en~~L~q 984 (1464)
+.+...|+|
T Consensus 409 eqevkrLrq 417 (502)
T KOG0982|consen 409 EQEVKRLRQ 417 (502)
T ss_pred HHHHHHhcc
Confidence 333333333
No 129
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.26 E-value=0.062 Score=54.64 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=21.2
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
++..+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 35679999999999999999999987764
No 130
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.23 E-value=40 Score=45.00 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=20.5
Q ss_pred HhccCcceeecCC-eeEEecCCCCCCCCCCHHHHHHhh
Q 000484 19 RYELNEIYTYTGN-ILIAINPFQRLPHLYDTHMMEQYK 55 (1464)
Q Consensus 19 R~~~~~iYT~~G~-~LiavNP~~~l~~ly~~~~~~~y~ 55 (1464)
||..-.+-| -|. |+=++-|--.+++-|++++...-+
T Consensus 193 rYS~~~Pst-gGEVifrvl~P~~~iedPYs~~IQ~~LK 229 (1758)
T KOG0994|consen 193 RYSDPEPST-GGEVIFRVLDPAIDIEDPYSAKIQELLK 229 (1758)
T ss_pred ccCCCCCCC-CCeEEEEecCCCCCCCCchhHHHHHHhh
Confidence 444444422 333 455666777777778877766543
No 131
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.91 E-value=0.074 Score=53.67 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEecCCCCCChhHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl 107 (1464)
|+|+|-+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999986
No 132
>PRK01156 chromosome segregation protein; Provisional
Probab=92.85 E-value=52 Score=45.22 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHH
Q 000484 1257 QSIVKSLNSYLKTMKVNYVPPFL 1279 (1464)
Q Consensus 1257 ~~il~~L~~~~~~l~~~~v~~~l 1279 (1464)
...+..|+.+...+...+++..+
T Consensus 732 ~~~~~~l~~~r~~l~k~~~~~~I 754 (895)
T PRK01156 732 KKAIGDLKRLREAFDKSGVPAMI 754 (895)
T ss_pred HHHHHHHHHHHHHhhhccchHHH
Confidence 44455666666677766665533
No 133
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.83 E-value=28 Score=42.06 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000484 954 TEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 985 (1464)
Q Consensus 954 ~e~e~~~L~~e~~~Leekl~~Le~en~~L~q~ 985 (1464)
.+.+.-.|++....++..+.+|..++..+...
T Consensus 478 e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~ 509 (622)
T COG5185 478 EENKSITLEEDIKNLKHDINELTQILEKLELE 509 (622)
T ss_pred HhccceeHHHHhhhHHhHHHHHHHHHHHHHHH
Confidence 33333345666666666666666666555544
No 134
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.72 E-value=18 Score=39.69 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Q 000484 953 DTEEKVGQLQESMQRLEEKLCNSE 976 (1464)
Q Consensus 953 ~~e~e~~~L~~e~~~Leekl~~Le 976 (1464)
....+...+..++..+.+++..|.
T Consensus 161 ~e~kK~~~~~~~~~~l~~ei~~L~ 184 (194)
T PF15619_consen 161 SEKKKHKEAQEEVKSLQEEIQRLN 184 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444333
No 135
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=92.66 E-value=0.28 Score=55.52 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=29.5
Q ss_pred hcCCCeEEEecCCCCCChhHHHHHHHHHHHHhhC
Q 000484 79 NEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG 112 (1464)
Q Consensus 79 ~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~ 112 (1464)
..++..-|.|+|.||||||+.++.+...|...++
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 4477889999999999999999999999976544
No 136
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.61 E-value=8 Score=50.42 Aligned_cols=16 Identities=6% Similarity=-0.089 Sum_probs=9.6
Q ss_pred CCCCCHHHHHHHHhcC
Q 000484 1368 CPVLSIQQLYRISTMY 1383 (1464)
Q Consensus 1368 c~~Ln~~Ql~kiL~~Y 1383 (1464)
++..++-||.+=|...
T Consensus 946 y~~~~~~el~kkL~~~ 961 (1200)
T KOG0964|consen 946 YQDKKSKELMKKLHRC 961 (1200)
T ss_pred hccCCHHHHHHHHHHH
Confidence 5666776666655443
No 137
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.59 E-value=26 Score=46.32 Aligned_cols=86 Identities=24% Similarity=0.193 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH--HHH---HHHHHHH--HHHHhhHHHH
Q 000484 907 EKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVG--QLQ---ESMQRLE--EKLCNSESEN 979 (1464)
Q Consensus 907 ~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~--~L~---~e~~~Le--ekl~~Le~en 979 (1464)
..+.+|..+....+.++..+..+++..+++...++=+..-+.++|+--.++.+ .-. ...+.|| +++..|+.|-
T Consensus 120 ~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC 199 (769)
T PF05911_consen 120 KLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAEC 199 (769)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666555544444444433222222 111 1234444 3788888888
Q ss_pred HHHHHHHhhcCCC
Q 000484 980 QVIRQQALAMSPT 992 (1464)
Q Consensus 980 ~~L~q~~~~~~p~ 992 (1464)
++|+--+-..-||
T Consensus 200 ~rLr~l~rk~lpg 212 (769)
T PF05911_consen 200 QRLRALVRKKLPG 212 (769)
T ss_pred HHHHHHHhccCCC
Confidence 8887654433344
No 138
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.51 E-value=16 Score=46.91 Aligned_cols=28 Identities=29% Similarity=0.224 Sum_probs=18.5
Q ss_pred eeeeechhhhhhcccccHHHHHHHHhhC
Q 000484 487 EVTYLADLFLDKNKDYVVAEHQVLLTAS 514 (1464)
Q Consensus 487 ~V~Y~~~~fl~kN~d~~~~~~~~ll~~S 514 (1464)
.|.|--..|+-+|-|.-..=+..++..|
T Consensus 389 Av~ycf~s~l~dN~~gq~~~l~tllp~~ 416 (970)
T KOG0946|consen 389 AVLYCFRSYLYDNDDGQRKFLKTLLPSS 416 (970)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHhhhh
Confidence 4778888888888876544444555443
No 139
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.46 E-value=0.11 Score=46.84 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=20.9
Q ss_pred EEecCCCCCChhHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl 107 (1464)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 140
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.35 E-value=0.098 Score=56.59 Aligned_cols=24 Identities=38% Similarity=0.390 Sum_probs=21.3
Q ss_pred eEEEecCCCCCChhHHHHHHHHHH
Q 000484 84 NSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 84 QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
+.|+|.|.||||||+.++.+...+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999887765
No 141
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.34 E-value=17 Score=48.04 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=16.9
Q ss_pred hHhHHHHHHHHHHHHH-HHHhcCCCHHHHHHH
Q 000484 1253 IAHWQSIVKSLNSYLK-TMKVNYVPPFLVRKV 1283 (1464)
Q Consensus 1253 ~~~~~~il~~L~~~~~-~l~~~~v~~~l~~Q~ 1283 (1464)
+.+++.+-+-+..=.+ .++..+|++.+++|+
T Consensus 834 p~t~~eld~~I~~e~t~~~~~~n~ne~~vq~y 865 (1072)
T KOG0979|consen 834 PTTMDELDQAITDELTRALKFENVNEDAVQQY 865 (1072)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 3345555444444444 666777777765543
No 142
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.32 E-value=0.094 Score=56.66 Aligned_cols=33 Identities=36% Similarity=0.573 Sum_probs=22.6
Q ss_pred HhcCCCeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 78 INEGKSNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 78 ~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
...+...+|+|.|++|+|||...+.+++++..-
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 456678999999999999999999998888764
No 143
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.32 E-value=42 Score=42.89 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=12.7
Q ss_pred HHHHHHHHhhHHHHHHHHHH
Q 000484 966 QRLEEKLCNSESENQVIRQQ 985 (1464)
Q Consensus 966 ~~Leekl~~Le~en~~L~q~ 985 (1464)
..|+.++..|+.+|..+...
T Consensus 295 ~~l~~~~~~LELeN~~l~tk 314 (716)
T KOG4593|consen 295 EKLQSTLLGLELENEDLLTK 314 (716)
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 34445666777777777654
No 144
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.28 E-value=9.4 Score=48.91 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=11.2
Q ss_pred HHHHHHhcCCCHHHHHHHHhh
Q 000484 288 LNTTAELLKCDAKSLEDALIN 308 (1464)
Q Consensus 288 l~~~a~lLgv~~~~L~~~l~~ 308 (1464)
++.+..||.+-+-++..++..
T Consensus 143 IqLlsalls~r~~e~q~~ll~ 163 (970)
T KOG0946|consen 143 IQLLSALLSCRPTELQDALLV 163 (970)
T ss_pred HHHHHHHHhcCCHHHHHHHHH
Confidence 444555555555555555543
No 145
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.23 E-value=20 Score=46.39 Aligned_cols=11 Identities=36% Similarity=0.685 Sum_probs=7.8
Q ss_pred ccCCCCCcccc
Q 000484 1419 LDDDSSIPFTV 1429 (1464)
Q Consensus 1419 lD~~~~~Pf~~ 1429 (1464)
|-++.++||-+
T Consensus 594 L~~~pcipffy 604 (617)
T PF15070_consen 594 LGSNPCIPFFY 604 (617)
T ss_pred CCCCCccccee
Confidence 66677888854
No 146
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.22 E-value=0.91 Score=49.96 Aligned_cols=61 Identities=25% Similarity=0.194 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000484 924 LSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 984 (1464)
Q Consensus 924 ~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~q 984 (1464)
..++..+..++.++..++..+.+..+.++.+.+++..|+-+...+++++..++.||..|-+
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444455556666666666666777777777777766543
No 147
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=92.21 E-value=19 Score=38.76 Aligned_cols=24 Identities=13% Similarity=0.062 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 917 DSLKALLLSERQSAEEARKACMDA 940 (1464)
Q Consensus 917 ~~lk~el~~le~~~~~le~e~~~~ 940 (1464)
+.+....+..+..++.+..++.+.
T Consensus 133 e~~~q~~d~~e~~ik~ltdKLkEa 156 (205)
T KOG1003|consen 133 EKLEQKEEKYEEELKELTDKLKEA 156 (205)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhhh
Confidence 333333333344444444443333
No 148
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.13 E-value=0.15 Score=59.11 Aligned_cols=28 Identities=39% Similarity=0.625 Sum_probs=23.7
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
.....++|+|++|+|||+.++.+.+.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3456899999999999999999877764
No 149
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=92.11 E-value=0.19 Score=51.35 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.4
Q ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 80 EGKSNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 80 ~~~~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
......++|.|++|+|||..++.+.+.+.
T Consensus 16 ~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 16 LPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34567999999999999999999998885
No 150
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=92.06 E-value=45 Score=42.68 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 908 KIESLTAEVDSLKALLLSERQSAEEARKAC 937 (1464)
Q Consensus 908 ~~~~Le~e~~~lk~el~~le~~~~~le~e~ 937 (1464)
+.+.|+.++.+.+.+++....-...+.+-+
T Consensus 198 e~d~L~~qLsk~~~~le~q~tlv~~LR~Yv 227 (739)
T PF07111_consen 198 EADLLREQLSKTQEELEAQVTLVEQLRKYV 227 (739)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433334444333
No 151
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.99 E-value=0.098 Score=60.54 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
++.+.+=|-||||||||++++.||+.|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4668888999999999999999999884
No 152
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.92 E-value=1.7 Score=47.97 Aligned_cols=77 Identities=9% Similarity=0.122 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000484 906 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 985 (1464)
Q Consensus 906 ~~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~q~ 985 (1464)
...+..+++++++++.++.+..+..++ ..+++++........+.++++++++|.+++..++.++..++.++..++..
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~~---~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWNQ---RTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777766666655443 23333343444455556677777777777777777777777777666654
No 153
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.85 E-value=82 Score=45.21 Aligned_cols=9 Identities=33% Similarity=0.294 Sum_probs=3.8
Q ss_pred ccceeeccc
Q 000484 647 GKTKVFLRA 655 (1464)
Q Consensus 647 GkTkVFlr~ 655 (1464)
|...-|+++
T Consensus 182 G~f~~~L~a 190 (1486)
T PRK04863 182 GIIPRRLRS 190 (1486)
T ss_pred CCchhhhhc
Confidence 444444443
No 154
>PRK06696 uridine kinase; Validated
Probab=91.81 E-value=0.21 Score=56.20 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 68 AIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 68 aiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
.+|+..+.. ..++.--|.|+|.||||||+.|+.|.+.|..
T Consensus 9 ~la~~~~~~--~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 9 ELAEHILTL--NLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHh--CCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555442 3556789999999999999999999998854
No 155
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.70 E-value=0.27 Score=50.39 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
..+..|+++|++|||||+.+|.+++.|
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 456689999999999999999988877
No 156
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.70 E-value=19 Score=47.50 Aligned_cols=52 Identities=17% Similarity=0.107 Sum_probs=26.7
Q ss_pred CCCCeEEEeccceeeeechhhhhh-----cccccHHHHHHHHhhCCchhHhhcCCCCC
Q 000484 475 SRTSFTISHYAGEVTYLADLFLDK-----NKDYVVAEHQVLLTASKCPFVSGLFPPLP 527 (1464)
Q Consensus 475 ~~~~F~I~Hyag~V~Y~~~~fl~k-----N~d~~~~~~~~ll~~S~~~~v~~lf~~~~ 527 (1464)
.+..|-+.|-+|--.=.. .|+.+ +.|.-..+-+..+...+...|..++...+
T Consensus 377 ~~~ryy~~H~~GvH~V~L-~wl~~L~~fl~~~~~~~dsl~~l~~~~~~~Ve~llcT~~ 433 (717)
T PF10168_consen 377 NPDRYYCYHNAGVHSVTL-PWLSALQEFLESDEEDKDSLQELASESPCIVEYLLCTKP 433 (717)
T ss_pred CCceEEEEecCccEEEEe-ccHHHHHHHhcccCCccchhhhhcccCCcceEEEeccCC
Confidence 457899999999633333 36552 22222222233333334456666665433
No 157
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.65 E-value=5.8 Score=43.45 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000484 919 LKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESE 978 (1464)
Q Consensus 919 lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~e 978 (1464)
.++.+..++..++++.+++.++.....+.............++.++.+.+.+++.+++..
T Consensus 128 ~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 187 (191)
T PF04156_consen 128 VEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQEL 187 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443334444445555555555555556666655555443
No 158
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=91.39 E-value=24 Score=38.19 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 000484 954 TEEKVGQLQESMQRLEEKLCNS 975 (1464)
Q Consensus 954 ~e~e~~~L~~e~~~Leekl~~L 975 (1464)
..+++..+...+..++.++..+
T Consensus 150 ~~~~~~~l~~~i~~l~rk~~~l 171 (177)
T PF13870_consen 150 TKEEVEELRKEIKELERKVEIL 171 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 159
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.39 E-value=0.16 Score=49.89 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=20.7
Q ss_pred CCeEEEecCCCCCChhHHHHHHH
Q 000484 82 KSNSILVSGESGAGKTETTKMLM 104 (1464)
Q Consensus 82 ~~QsIiisGeSGaGKT~~~k~~~ 104 (1464)
..+.+.|.|+||||||+.++.++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45889999999999999999976
No 160
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.26 E-value=34 Score=40.28 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHH
Q 000484 963 ESMQRLEEKLCNSESENQVIR 983 (1464)
Q Consensus 963 ~e~~~Leekl~~Le~en~~L~ 983 (1464)
.++.-|.+++..++.|..-++
T Consensus 196 ~ENRyL~erl~q~qeE~~l~k 216 (319)
T PF09789_consen 196 MENRYLKERLKQLQEEKELLK 216 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333
No 161
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.24 E-value=54 Score=41.96 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=14.5
Q ss_pred HhhCCCCCHHHHH-------HHHhcCccCCCC
Q 000484 1365 KELCPVLSIQQLY-------RISTMYWDDKYG 1389 (1464)
Q Consensus 1365 ~~~c~~Ln~~Ql~-------kiL~~Y~~d~~e 1389 (1464)
.+.|..|-.-+|. +|-+.|.+.++.
T Consensus 631 r~ac~sL~Gykid~~~~s~~ritS~ya~~~~~ 662 (716)
T KOG4593|consen 631 RDACYSLLGYKIDFTLESRYRLTSGYAEEPDD 662 (716)
T ss_pred HHHHHhhhhhhhhcccccceeeeeeccCCCch
Confidence 4667777666664 444556654443
No 162
>PRK05480 uridine/cytidine kinase; Provisional
Probab=91.20 E-value=0.18 Score=56.07 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=24.0
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
.+.--|.|+|.||||||+.++.|.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998877
No 163
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=91.17 E-value=0.22 Score=52.40 Aligned_cols=29 Identities=38% Similarity=0.448 Sum_probs=25.4
Q ss_pred CeEEEecCCCCCChhHHHHHHHHHHHHhh
Q 000484 83 SNSILVSGESGAGKTETTKMLMRYLAYLG 111 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~yl~~~~ 111 (1464)
.-.|.++|.||||||+.++.+-+.|-..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 45799999999999999999999998764
No 164
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.12 E-value=0.15 Score=54.57 Aligned_cols=26 Identities=38% Similarity=0.464 Sum_probs=22.7
Q ss_pred CCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 82 KSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 82 ~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
+..-|||||.||+|||+.+|.++.-.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 34679999999999999999988766
No 165
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=91.10 E-value=58 Score=42.09 Aligned_cols=58 Identities=16% Similarity=0.152 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 913 TAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEE 970 (1464)
Q Consensus 913 e~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Lee 970 (1464)
+.|..+++.++++.....+.+.-+++..+.++.-+.-.++.-+.|+.+|.+-...|+.
T Consensus 493 d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~ 550 (861)
T PF15254_consen 493 DIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQN 550 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445544444444444444444444443333444444444444444333333
No 166
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=91.08 E-value=31 Score=45.04 Aligned_cols=60 Identities=12% Similarity=0.023 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000484 922 LLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQV 981 (1464)
Q Consensus 922 el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~ 981 (1464)
+++.++..++.++++...+....++..+-..-.|..+....+.++.-+++...|..|+..
T Consensus 122 efE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 122 EFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554444444433444445555555555555555555555444
No 167
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.08 E-value=95 Score=44.52 Aligned_cols=72 Identities=15% Similarity=0.239 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 000484 821 LKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEA 892 (1464)
Q Consensus 821 l~~~~~~Le~~~~el~~~l~~e~~~~~~le~~k~~e~~~L~~~~~eLe~~lee~~~~l~~e~e~l~~~~ee~ 892 (1464)
|......+..+...++..+...+.....++........+++.++.+|+..+..+...+.++...++......
T Consensus 764 L~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~ 835 (1822)
T KOG4674|consen 764 LSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSL 835 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444455555555544444443333333333444555666666666666666666555554444444433
No 168
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.04 E-value=0.16 Score=56.31 Aligned_cols=26 Identities=38% Similarity=0.500 Sum_probs=23.4
Q ss_pred CCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 82 KSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 82 ~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
..+.|+|.|.||||||+.++.+.+.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56899999999999999999988875
No 169
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.00 E-value=21 Score=36.74 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000484 954 TEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 985 (1464)
Q Consensus 954 ~e~e~~~L~~e~~~Leekl~~Le~en~~L~q~ 985 (1464)
.+.+...|.+++..++.++.+|..+|..|=++
T Consensus 96 w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Q 127 (132)
T PF07926_consen 96 WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQ 127 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555666666666666666555444
No 170
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=90.99 E-value=21 Score=39.83 Aligned_cols=28 Identities=14% Similarity=0.477 Sum_probs=18.7
Q ss_pred cChhhHHHHH----hhcCCCccChHHHHHhhh
Q 000484 588 GGVLEAIRIS----CAGYPTRRTFYEFLHRFG 615 (1464)
Q Consensus 588 ~gvle~iri~----~~Gyp~r~~~~~F~~ry~ 615 (1464)
+|..+.++++ +-.||+|-.+++|+..-+
T Consensus 107 sgfad~lkvka~eakidfpsrhdwdd~fm~~k 138 (445)
T KOG2891|consen 107 SGFADILKVKAAEAKIDFPSRHDWDDFFMDAK 138 (445)
T ss_pred cccchHHhhhHHhhcCCCCcccchHHHHhhhh
Confidence 3555555554 346899999999886554
No 171
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.99 E-value=0.17 Score=55.82 Aligned_cols=25 Identities=32% Similarity=0.663 Sum_probs=22.4
Q ss_pred EEEecCCCCCChhHHHHHHHHHHHH
Q 000484 85 SILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
.|+|+|++|||||++.+.+++++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999888753
No 172
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=90.98 E-value=0.16 Score=51.49 Aligned_cols=23 Identities=43% Similarity=0.781 Sum_probs=21.5
Q ss_pred EEecCCCCCChhHHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
|++.|++|+|||+.++.+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 78999999999999999999974
No 173
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.93 E-value=10 Score=38.89 Aligned_cols=65 Identities=26% Similarity=0.412 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 906 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLC 973 (1464)
Q Consensus 906 ~~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~ 973 (1464)
+.+...++.++..++.+.......+...+..... ....+.+++.+++..+..|...+.-|-+++.
T Consensus 65 r~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~---qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 65 REELQELQQEINELKAEAESAKAELEESEASWEE---QKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444433333222 2234555666666666666666666655554
No 174
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.93 E-value=0.25 Score=58.48 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=27.5
Q ss_pred HHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 74 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 74 y~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
...+...+. .|||+|..|||||+..+.++.++..
T Consensus 137 L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 137 IRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 445555554 6999999999999999999998854
No 175
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=90.91 E-value=0.19 Score=52.48 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=21.5
Q ss_pred CCeEEEecCCCCCChhHHHHHHHHH
Q 000484 82 KSNSILVSGESGAGKTETTKMLMRY 106 (1464)
Q Consensus 82 ~~QsIiisGeSGaGKT~~~k~~~~y 106 (1464)
.+..|+|.|+||||||+.+..+++.
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3689999999999999999877664
No 176
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.85 E-value=4.2 Score=45.54 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 000484 949 KKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQALA 988 (1464)
Q Consensus 949 ~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~q~~~~ 988 (1464)
..+.-+|..+......+..|+.++..++.++.+..+.+.+
T Consensus 95 ~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~ 134 (307)
T PF10481_consen 95 SQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASS 134 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445566666666667777777777777777776665543
No 177
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=90.69 E-value=0.17 Score=55.55 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=22.6
Q ss_pred EEecCCCCCChhHHHHHHHHHHHHh
Q 000484 86 ILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
|-|+|.||||||+.|+.+...|...
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 7799999999999999999999643
No 178
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=90.66 E-value=76 Score=42.66 Aligned_cols=11 Identities=18% Similarity=0.232 Sum_probs=4.4
Q ss_pred HHHHhhHHHHH
Q 000484 970 EKLCNSESENQ 980 (1464)
Q Consensus 970 ekl~~Le~en~ 980 (1464)
.++..|+.+..
T Consensus 1731 aeL~~Le~r~~ 1741 (1758)
T KOG0994|consen 1731 AELAGLEKRVE 1741 (1758)
T ss_pred HHhhhHHHHHH
Confidence 33344444433
No 179
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.66 E-value=39 Score=39.37 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000484 909 IESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSES 977 (1464)
Q Consensus 909 ~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~ 977 (1464)
+..|...+..+..+.......++.+..+.-+++..++. +.|--++.|.+.+..|+.....|+.
T Consensus 137 V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~------EQE~lvN~L~Kqm~~l~~eKr~Lq~ 199 (310)
T PF09755_consen 137 VNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQ------EQEALVNRLWKQMDKLEAEKRRLQE 199 (310)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333221 1122234455555555554444444
No 180
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=90.66 E-value=38 Score=39.23 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000484 957 KVGQLQESMQRLEEKLC 973 (1464)
Q Consensus 957 e~~~L~~e~~~Leekl~ 973 (1464)
++..++.++..++..+.
T Consensus 229 e~~~~~~elre~~k~ik 245 (294)
T COG1340 229 EFRNLQNELRELEKKIK 245 (294)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 181
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=90.64 E-value=0.18 Score=55.55 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.2
Q ss_pred EEecCCCCCChhHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl 107 (1464)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999988877
No 182
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.64 E-value=0.28 Score=56.71 Aligned_cols=34 Identities=32% Similarity=0.544 Sum_probs=26.3
Q ss_pred HHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 74 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 74 y~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
+..+... ..-.|+|+|++|||||++.+.++.++.
T Consensus 72 l~~~~~~-~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 72 FRKLLEK-PHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred HHHHHhc-CCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 3444432 234799999999999999999998874
No 183
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.62 E-value=62 Score=42.81 Aligned_cols=77 Identities=21% Similarity=0.281 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000484 909 IESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 985 (1464)
Q Consensus 909 ~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~q~ 985 (1464)
+.+++.++.+.-+++.+++..+.+...++.++......+.+++.++..+...|..+..+|+..+..++.+..+-++.
T Consensus 420 ~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~ 496 (1200)
T KOG0964|consen 420 IEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKN 496 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444344444444444444444444445555666777777778888888888888888777776655544
No 184
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=90.60 E-value=36 Score=38.85 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000484 954 TEEKVGQLQESMQRLEEKLCNSESENQVIRQQA 986 (1464)
Q Consensus 954 ~e~e~~~L~~e~~~Leekl~~Le~en~~L~q~~ 986 (1464)
...++..-.+..+.+++++..|+.+...|..+.
T Consensus 191 m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 191 MQKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444445555555555555554443
No 185
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.41 E-value=35 Score=42.10 Aligned_cols=25 Identities=12% Similarity=-0.008 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 913 TAEVDSLKALLLSERQSAEEARKAC 937 (1464)
Q Consensus 913 e~e~~~lk~el~~le~~~~~le~e~ 937 (1464)
+.++..++.++.+.+.++..++.++
T Consensus 202 ~~~~~~~~~~l~~~~~~l~~~~~~l 226 (423)
T TIGR01843 202 ERERAEAQGELGRLEAELEVLKRQI 226 (423)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333333
No 186
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=90.40 E-value=62 Score=41.24 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 000484 945 TELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQALA 988 (1464)
Q Consensus 945 ~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~q~~~~ 988 (1464)
.+..+.+.-++.++..|...+..-..-+.+|..+|..|+.+...
T Consensus 583 ~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~a 626 (786)
T PF05483_consen 583 LKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITA 626 (786)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777777777777788888888877543
No 187
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.36 E-value=80 Score=42.42 Aligned_cols=83 Identities=12% Similarity=0.192 Sum_probs=48.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000484 902 IVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDA-EVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQ 980 (1464)
Q Consensus 902 l~~~~~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~-e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~ 980 (1464)
++.++..++.++.+++.++.+..+....+++. +++..- ....++...++.+.++....+.+++..|...+..++....
T Consensus 809 ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie 887 (1141)
T KOG0018|consen 809 VERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIE 887 (1141)
T ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 44455556666666666665555555555444 222221 1223455566667777777777777778777777777666
Q ss_pred HHHHH
Q 000484 981 VIRQQ 985 (1464)
Q Consensus 981 ~L~q~ 985 (1464)
++...
T Consensus 888 ~~~~e 892 (1141)
T KOG0018|consen 888 RKESE 892 (1141)
T ss_pred HHHHH
Confidence 65543
No 188
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=90.27 E-value=0.24 Score=55.07 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=23.5
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
.+...|.|+|.||||||+.++.+...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567888999999999999998887653
No 189
>PRK06547 hypothetical protein; Provisional
Probab=90.24 E-value=0.4 Score=51.64 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=24.6
Q ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 80 EGKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 80 ~~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
.+...-|+|+|.||||||+.++.+.+-+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678899999999999999999988764
No 190
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.22 E-value=46 Score=39.95 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000484 957 KVGQLQESMQRLEEKLCNSESENQVIRQ 984 (1464)
Q Consensus 957 e~~~L~~e~~~Leekl~~Le~en~~L~q 984 (1464)
.+.+.+++....++-+.+|-.+...++.
T Consensus 361 ~Lrrfq~ekeatqELieelrkelehlr~ 388 (502)
T KOG0982|consen 361 ILRRFQEEKEATQELIEELRKELEHLRR 388 (502)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555554444
No 191
>PRK05541 adenylylsulfate kinase; Provisional
Probab=90.17 E-value=0.21 Score=53.85 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=25.6
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
.+...|++.|.||||||+.++.+.+.|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35679999999999999999999998863
No 192
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.15 E-value=0.43 Score=53.63 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 72 VAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 72 ~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
.+.+.+.....+..|+|.|++|+|||..++.+.+++..
T Consensus 27 ~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 27 AALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444567889999999999999999999988753
No 193
>PTZ00301 uridine kinase; Provisional
Probab=90.14 E-value=0.22 Score=55.44 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=20.6
Q ss_pred EEEecCCCCCChhHHHHHHHHHHH
Q 000484 85 SILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
-|-|+|.||||||+.|+.|.+.|.
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHH
Confidence 367999999999999998887764
No 194
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=90.12 E-value=0.32 Score=57.78 Aligned_cols=52 Identities=21% Similarity=0.360 Sum_probs=34.2
Q ss_pred HHhhccccCCC--CchHHHHHHHHHHHHHh-cCCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 52 EQYKGAQFGEL--SPHVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 52 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~-~~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
+.|+-+...++ ++|+-+ ....... .+-+..++++|++|+|||+.++.+.+.+
T Consensus 13 ~kyrP~~~~~~~~~~~~~~----~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 13 QKYRPSTIDECILPAADKE----TFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred eccCCCcHHHhcCcHHHHH----HHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 45655555554 344433 3333333 3346778889999999999999998876
No 195
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=90.09 E-value=0.38 Score=57.57 Aligned_cols=32 Identities=31% Similarity=0.495 Sum_probs=26.2
Q ss_pred HHhcCCCeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 77 MINEGKSNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 77 m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
+...+....++++|++|+|||+.++.+.+++.
T Consensus 30 ~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 30 AVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 33444445799999999999999999999885
No 196
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=90.01 E-value=18 Score=44.05 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000484 915 EVDSLKALLLSERQSAEE 932 (1464)
Q Consensus 915 e~~~lk~el~~le~~~~~ 932 (1464)
++.+|..++..++++++.
T Consensus 234 e~skLlsql~d~qkk~k~ 251 (596)
T KOG4360|consen 234 ENSKLLSQLVDLQKKIKY 251 (596)
T ss_pred HHHHHHHHHHhhHHHHHH
Confidence 333444444444444333
No 197
>PRK08233 hypothetical protein; Provisional
Probab=89.99 E-value=0.19 Score=54.28 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.1
Q ss_pred eEEEecCCCCCChhHHHHHHHHHHH
Q 000484 84 NSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 84 QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
.-|.|+|.||||||+.++.+..+|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5788999999999999999888773
No 198
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.97 E-value=41 Score=38.50 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000484 819 GALKEAKDKLEKRVEELTWRLQ 840 (1464)
Q Consensus 819 ~~l~~~~~~Le~~~~el~~~l~ 840 (1464)
..++.....+++++..|...++
T Consensus 41 ~~~~~~~~~~q~ei~~L~~qi~ 62 (265)
T COG3883 41 SELQKEKKNIQNEIESLDNQIE 62 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444433333
No 199
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=89.95 E-value=0.21 Score=50.40 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=24.4
Q ss_pred CeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 83 SNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
.+.|+|.|.+|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999988877543
No 200
>PRK06762 hypothetical protein; Provisional
Probab=89.87 E-value=0.27 Score=52.41 Aligned_cols=25 Identities=40% Similarity=0.627 Sum_probs=22.8
Q ss_pred CeEEEecCCCCCChhHHHHHHHHHH
Q 000484 83 SNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...|+|+|.+|||||+.++.+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999887
No 201
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.79 E-value=18 Score=37.47 Aligned_cols=12 Identities=17% Similarity=0.556 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 000484 860 LQDALQAMQLQV 871 (1464)
Q Consensus 860 L~~~~~eLe~~l 871 (1464)
++..+..|+.++
T Consensus 22 le~~v~~LEreL 33 (140)
T PF10473_consen 22 LEDHVESLEREL 33 (140)
T ss_pred HHHHHHHHHHHH
Confidence 333334444333
No 202
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.75 E-value=37 Score=37.63 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHH
Q 000484 906 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLED 953 (1464)
Q Consensus 906 ~~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~ 953 (1464)
+..+..+...+..++.++..++-..+.++..+..++.+..++..+...
T Consensus 85 K~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 85 KQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555544444433
No 203
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=89.74 E-value=26 Score=44.52 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=8.4
Q ss_pred cHHHHHHHHHHHHHHH
Q 000484 905 DTEKIESLTAEVDSLK 920 (1464)
Q Consensus 905 ~~~~~~~Le~e~~~lk 920 (1464)
...++.+++.++..+.
T Consensus 252 l~~~l~~l~~~l~~l~ 267 (498)
T TIGR03007 252 LDGRIEALEKQLDALR 267 (498)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3445555555555554
No 204
>PRK07261 topology modulation protein; Provisional
Probab=89.70 E-value=0.24 Score=53.32 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEecCCCCCChhHHHHHHHHHH
Q 000484 85 SILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~~~yl 107 (1464)
-|+|.|.||||||+.++.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999886554
No 205
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=89.70 E-value=0.23 Score=53.10 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.9
Q ss_pred EEEecCCCCCChhHHHHHHHHHH
Q 000484 85 SILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~~~yl 107 (1464)
.|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998865
No 206
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=89.66 E-value=0.21 Score=55.82 Aligned_cols=19 Identities=42% Similarity=0.714 Sum_probs=16.5
Q ss_pred EEEecCCCCCChhHHHHHH
Q 000484 85 SILVSGESGAGKTETTKML 103 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~ 103 (1464)
-|||||-||||||++.+-+
T Consensus 3 lvIVTGlSGAGKsvAl~~l 21 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL 21 (286)
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 4899999999999987654
No 207
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=89.66 E-value=0.28 Score=52.90 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.6
Q ss_pred CeEEEecCCCCCChhHHHHHHHHHH
Q 000484 83 SNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
..-||++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999887654
No 208
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=89.64 E-value=35 Score=44.19 Aligned_cols=179 Identities=14% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 795 TQCGWRRRVARRELRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEA 874 (1464)
Q Consensus 795 iQs~~R~~~arkel~~lk~~a~e~~~l~~~~~~Le~~~~el~~~l~~e~~~~~~le~~k~~e~~~L~~~~~eLe~~lee~ 874 (1464)
+...+.....+-.-..-....-++.........++.++..+-..++.+.......+.. ...+...+..+
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~-----------~~~l~~~l~~~ 322 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKN-----------SDTLPDFLEHA 322 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHH
Q 000484 875 NFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDT 954 (1464)
Q Consensus 875 ~~~l~~e~e~l~~~~ee~~~~~~e~~~l~~~~~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~ 954 (1464)
.........++....+.-.-...+.......+++++.++.....+...+......+..+++++.++.+....+.++..+.
T Consensus 323 ~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei 402 (569)
T PRK04778 323 KEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKL 402 (569)
T ss_pred HHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000484 955 EEKVGQLQESMQRLEEKLCNSESENQVIRQ 984 (1464)
Q Consensus 955 e~e~~~L~~e~~~Leekl~~Le~en~~L~q 984 (1464)
.+.+..|..+....++++..+......++.
T Consensus 403 ~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr 432 (569)
T PRK04778 403 SEMLQGLRKDELEAREKLERYRNKLHEIKR 432 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 209
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=89.56 E-value=0.26 Score=51.06 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=20.4
Q ss_pred EEecCCCCCChhHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl 107 (1464)
|+|+|.+|||||+.++.+...+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998876
No 210
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=89.48 E-value=0.27 Score=53.38 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.9
Q ss_pred EEecCCCCCChhHHHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
|.|+|.||||||+.++.+...|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999988864
No 211
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.41 E-value=58 Score=39.44 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=8.8
Q ss_pred HHHHHHHHHhhHHHHHHHH
Q 000484 965 MQRLEEKLCNSESENQVIR 983 (1464)
Q Consensus 965 ~~~Leekl~~Le~en~~L~ 983 (1464)
++++.+....+..+|..|.
T Consensus 497 lEkl~~Dyqairqen~~L~ 515 (521)
T KOG1937|consen 497 LEKLHQDYQAIRQENDQLF 515 (521)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444555554443
No 212
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=89.37 E-value=0.24 Score=56.78 Aligned_cols=20 Identities=35% Similarity=0.680 Sum_probs=17.0
Q ss_pred eEEEecCCCCCChhHHHHHH
Q 000484 84 NSILVSGESGAGKTETTKML 103 (1464)
Q Consensus 84 QsIiisGeSGaGKT~~~k~~ 103 (1464)
+-|||||-||||||++.+.+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL 21 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH
Confidence 56999999999999886654
No 213
>PRK08084 DNA replication initiation factor; Provisional
Probab=89.34 E-value=0.57 Score=53.21 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 70 ADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 70 A~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
|-.+.+.+.......++++.|++|+|||+.+..+.+++..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3445555555556679999999999999999988887764
No 214
>PRK08118 topology modulation protein; Reviewed
Probab=89.12 E-value=0.31 Score=52.28 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.5
Q ss_pred eEEEecCCCCCChhHHHHHHHHHH
Q 000484 84 NSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 84 QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
+-|+|.|.+|||||+.++.+-+.+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999988875
No 215
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=89.12 E-value=0.28 Score=55.04 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.5
Q ss_pred EEecCCCCCChhHHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
|-|+|.||||||+.++.|...|.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999988875
No 216
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=89.06 E-value=1.3e+02 Score=43.14 Aligned_cols=27 Identities=30% Similarity=0.591 Sum_probs=23.9
Q ss_pred eEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 84 NSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 84 QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
-..+|+|.+|||||.+.-.++.+|..-
T Consensus 25 g~~~~~G~NGsGKS~~lda~~~~ll~~ 51 (1353)
T TIGR02680 25 GRLLLRGNNGAGKSKVLELLLPFLLDG 51 (1353)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhcC
Confidence 477889999999999999999998764
No 217
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=89.06 E-value=58 Score=46.64 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 000484 810 NLKMAARETGALK 822 (1464)
Q Consensus 810 ~lk~~a~e~~~l~ 822 (1464)
.++.+...+..+.
T Consensus 241 ~l~~~~~~l~~i~ 253 (1353)
T TIGR02680 241 RLEALERALRNFL 253 (1353)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 218
>PF13245 AAA_19: Part of AAA domain
Probab=89.01 E-value=0.51 Score=43.48 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 82 KSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 82 ~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
.+...+|.|..|||||++...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4667888999999999888888888875
No 219
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.00 E-value=2.1 Score=50.75 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000484 953 DTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 984 (1464)
Q Consensus 953 ~~e~e~~~L~~e~~~Leekl~~Le~en~~L~q 984 (1464)
..+.+...+.++.+.++.++.....++.+|++
T Consensus 103 ~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 103 ELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444444444444443
No 220
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=88.99 E-value=42 Score=37.24 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000484 860 LQDALQAMQLQVEEANFR 877 (1464)
Q Consensus 860 L~~~~~eLe~~lee~~~~ 877 (1464)
+...+..++..+.++..+
T Consensus 81 ~~~dL~s~E~sfsdl~~r 98 (207)
T PF05010_consen 81 AYADLNSLEKSFSDLHKR 98 (207)
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 333334444444443333
No 221
>PRK00131 aroK shikimate kinase; Reviewed
Probab=88.98 E-value=0.35 Score=51.76 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=23.8
Q ss_pred CCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 82 KSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 82 ~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
....|++.|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998876
No 222
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=88.83 E-value=0.36 Score=51.95 Aligned_cols=24 Identities=46% Similarity=0.652 Sum_probs=22.6
Q ss_pred EEEecCCCCCChhHHHHHHHHHHH
Q 000484 85 SILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
++++.|.||.|||+.++.+-++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999986
No 223
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.79 E-value=1e+02 Score=41.47 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHhhHHHHH
Q 000484 719 AAALKIQKNFHSYTARTSYLTARSSAIQLQTGLRAMVARN 758 (1464)
Q Consensus 719 ~AAi~IQ~~~R~~~~Rr~y~~lr~a~i~IQs~~Rg~laRk 758 (1464)
.++..-|..|..|-.-..-...-.-+...++-++....+.
T Consensus 211 ~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~ 250 (1141)
T KOG0018|consen 211 GKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERM 250 (1141)
T ss_pred HHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhh
Confidence 4667777778777655554444444444444444444433
No 224
>PRK14737 gmk guanylate kinase; Provisional
Probab=88.78 E-value=0.29 Score=53.51 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=22.3
Q ss_pred CCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 82 KSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 82 ~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
+.-.|||+|.||||||+.++.+++.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 34579999999999999999988754
No 225
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.72 E-value=0.3 Score=53.35 Aligned_cols=25 Identities=36% Similarity=0.715 Sum_probs=22.5
Q ss_pred CeEEEecCCCCCChhHHHHHHHHHH
Q 000484 83 SNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...|+|+|++|||||++.+.++.++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999988776
No 226
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=88.71 E-value=0.26 Score=53.77 Aligned_cols=25 Identities=28% Similarity=0.326 Sum_probs=20.9
Q ss_pred CeEEEecCCCCCChhHHHHHHHHHH
Q 000484 83 SNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
.+.|+|.|.||||||+..+.+...+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3579999999999999999885543
No 227
>PRK12377 putative replication protein; Provisional
Probab=88.68 E-value=0.69 Score=52.82 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 65 HVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 65 HifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
|+++.|......... ..+.++++|.+|+|||+.+..|.++|..-
T Consensus 85 ~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 85 YALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred HHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 566666655444433 35799999999999999999999999753
No 228
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=88.65 E-value=89 Score=40.63 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 000484 930 AEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQALA 988 (1464)
Q Consensus 930 ~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~q~~~~ 988 (1464)
.-++......++...++...++++++.....+..++..+..+...+++++.+|+.+...
T Consensus 561 ~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~ 619 (698)
T KOG0978|consen 561 AQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLER 619 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555666666777777777777777777778888888888877654
No 229
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.64 E-value=4.8 Score=44.30 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000484 912 LTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSES 977 (1464)
Q Consensus 912 Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~ 977 (1464)
....+..++.++..++.++..++.++.+....++.+..++..++-+...+++.+.+|+++-.+|-.
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444444444444444444433
No 230
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=88.58 E-value=59 Score=44.92 Aligned_cols=22 Identities=18% Similarity=0.213 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHH
Q 000484 964 SMQRLEEKLCNSESENQVIRQQ 985 (1464)
Q Consensus 964 e~~~Leekl~~Le~en~~L~q~ 985 (1464)
.+.+|-+.+...-.++..+.++
T Consensus 266 ~N~~Ls~~L~~~t~~~n~l~~~ 287 (1109)
T PRK10929 266 INRELSQALNQQAQRMDLIASQ 287 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 231
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=88.55 E-value=0.33 Score=47.86 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.5
Q ss_pred EEecCCCCCChhHHHHHHHHHHHHh
Q 000484 86 ILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
|.|.|++|.|||..++.+++++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6799999999999999999998754
No 232
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=88.54 E-value=0.27 Score=50.81 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=20.1
Q ss_pred EEecCCCCCChhHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl 107 (1464)
|+|.|.||||||+.++.+++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999998875
No 233
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=88.53 E-value=0.62 Score=54.87 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=24.2
Q ss_pred CeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 83 SNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
...|+|+|.+|||||+..+.++.++..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 358999999999999999999998864
No 234
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=88.53 E-value=34 Score=40.82 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000484 827 KLEKRVEELTWRLQFEKQLRTNL 849 (1464)
Q Consensus 827 ~Le~~~~el~~~l~~e~~~~~~l 849 (1464)
.+|..+.+++.+++.++.+....
T Consensus 256 ~aEqsl~dlQk~Lekar~e~rnv 278 (575)
T KOG4403|consen 256 RAEQSLEDLQKRLEKAREEQRNV 278 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhhhch
Confidence 34455556666666555443333
No 235
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=88.48 E-value=0.31 Score=53.18 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=19.4
Q ss_pred EEecCCCCCChhHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl 107 (1464)
|.|+|-||||||+.++.+...+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999998887764
No 236
>PTZ00121 MAEBL; Provisional
Probab=88.46 E-value=1.2e+02 Score=41.97 Aligned_cols=32 Identities=3% Similarity=0.247 Sum_probs=19.2
Q ss_pred HHHHHHHHH---HHhcCCCeEEEecCCCCCChhHHH
Q 000484 68 AIADVAYRA---MINEGKSNSILVSGESGAGKTETT 100 (1464)
Q Consensus 68 aiA~~Ay~~---m~~~~~~QsIiisGeSGaGKT~~~ 100 (1464)
+....+||+ |.+....-||||--.-+. +|.+|
T Consensus 249 df~n~CFR~LP~~Fnh~TkECvilGtHe~~-R~~nC 283 (2084)
T PTZ00121 249 DFNNECFLNLPILFNHQTKECVIIGTHEAK-RIHNC 283 (2084)
T ss_pred cCCcchhhcchHhhcCCCCceEEEecchhh-hhhhh
Confidence 334555554 456778889998554444 55444
No 237
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=88.45 E-value=47 Score=40.97 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 906 TEKIESLTAEVDSLKALLLSERQSAEEARKACM 938 (1464)
Q Consensus 906 ~~~~~~Le~e~~~lk~el~~le~~~~~le~e~~ 938 (1464)
+.++..++.++..++.++.+++..++.++.++.
T Consensus 202 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 234 (423)
T TIGR01843 202 ERERAEAQGELGRLEAELEVLKRQIDELQLERQ 234 (423)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555554444
No 238
>PRK00889 adenylylsulfate kinase; Provisional
Probab=88.30 E-value=0.5 Score=50.91 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=25.9
Q ss_pred CCeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 82 KSNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 82 ~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
+...|++.|.+|||||+.++.+...|...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45699999999999999999999999653
No 239
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=88.17 E-value=0.28 Score=52.13 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEecCCCCCChhHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl 107 (1464)
|++.|.||||||+.++.+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 6889999999999999999887
No 240
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=88.14 E-value=11 Score=47.88 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=85.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCcccchhHHhhchhHHHHHHhhcccc
Q 000484 1252 LIAHWQSIVKSLNSYLKTMKVNYVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEQWCYDATEE 1331 (1464)
Q Consensus 1252 ~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~~~ 1331 (1464)
+.++....+..|...+..|+.. +++.....+..++..-|+..+++.++++. -.|..-|.|+.+=+..|-..+..
T Consensus 353 ~S~el~~~L~~L~~~L~~L~~~-L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~~~L~~~~~~---- 426 (494)
T PF04437_consen 353 PSPELVPALSLLRSRLSFLERS-LPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDMRALFSVFSQ---- 426 (494)
T ss_dssp --GGGHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHHHHHHTTS------
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHHHHHHHHHHh----
Confidence 3456677899999999999999 99999999999999999999999999976 56666777777766554443333
Q ss_pred cccchHHHhhHHHHHHHHHhhcCCCcCCH--------------HHHHHhhC-CCCCHHHHHHHHh
Q 000484 1332 YAGSAWDELKHIRQAVGFLVINQKPKKTL--------------NEITKELC-PVLSIQQLYRIST 1381 (1464)
Q Consensus 1332 ~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~--------------~~i~~~~c-~~Ln~~Ql~kiL~ 1381 (1464)
+....-.++..|.+++.||-++..+.... .++..+.. ..||+.++.+||.
T Consensus 427 ~~~~p~~~f~~l~E~~~LL~L~~~~~~~~~~~l~~~~~~~~~~~~~l~~lgI~~Ls~~ea~~vL~ 491 (494)
T PF04437_consen 427 YTPRPEAFFKRLREACKLLNLPYGSAKLLKEFLSKSYIKNENARKLLEELGISHLSPSEARDVLY 491 (494)
T ss_dssp TTSGG-HHHHHHHHHHHHHGGGG-CGG--TTTTSHHHHHHT--SHHHHHTT-SSS-HHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHcCCCCcchhhhHHHHhhhhccchHHHHHHHHCCCCcCCHHHHHHHHH
Confidence 44445579999999999999976543322 11222221 4788888888875
No 241
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.10 E-value=0.81 Score=55.55 Aligned_cols=54 Identities=20% Similarity=0.387 Sum_probs=38.5
Q ss_pred HHHhhccccCCCC--chHHHHHHHHHHHHHhc-CCCeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 51 MEQYKGAQFGELS--PHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 51 ~~~y~~~~~~~~~--PHifaiA~~Ay~~m~~~-~~~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
.++|+-..+.++- +|+-.. ++++... +-+++++++|+.|+|||+.++.+.+.+-
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred HHHhCCCchhhccChHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 3556655555543 554443 4444444 4689999999999999999999999885
No 242
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=88.10 E-value=0.38 Score=50.17 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=21.4
Q ss_pred EEecCCCCCChhHHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
|.|||.+|||||+-++.+-+++-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 88999999999999999999874
No 243
>PF05729 NACHT: NACHT domain
Probab=88.07 E-value=0.44 Score=50.26 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=23.6
Q ss_pred EEEecCCCCCChhHHHHHHHHHHHHhh
Q 000484 85 SILVSGESGAGKTETTKMLMRYLAYLG 111 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~~~yl~~~~ 111 (1464)
-++|+|+.|+|||+.++.++..++.-.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 589999999999999999998887643
No 244
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=87.81 E-value=0.43 Score=57.09 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=23.1
Q ss_pred CeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 83 SNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
...|+|+|.+|||||+..+.++.++-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 46799999999999999999888773
No 245
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=87.80 E-value=89 Score=39.63 Aligned_cols=11 Identities=9% Similarity=0.292 Sum_probs=5.8
Q ss_pred hhHHHHHHHHH
Q 000484 974 NSESENQVIRQ 984 (1464)
Q Consensus 974 ~Le~en~~L~q 984 (1464)
+.+.++..|++
T Consensus 348 eIK~ELsiLk~ 358 (629)
T KOG0963|consen 348 EIKKELSILKA 358 (629)
T ss_pred HHHHHHHHHHH
Confidence 45555555554
No 246
>PRK14738 gmk guanylate kinase; Provisional
Probab=87.76 E-value=0.41 Score=53.22 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRY 106 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~y 106 (1464)
....-|||+|.||||||+.++.++..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46789999999999999988887654
No 247
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=87.75 E-value=0.37 Score=58.00 Aligned_cols=34 Identities=29% Similarity=0.571 Sum_probs=26.5
Q ss_pred HHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 74 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 74 y~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
+..+.. .....|+|+|++|||||++.+.+++++.
T Consensus 114 l~~~~~-~~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 114 LRELAE-RPRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred HHHHHh-hcCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 344443 2357899999999999999999988874
No 248
>PF12846 AAA_10: AAA-like domain
Probab=87.70 E-value=0.43 Score=55.82 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=25.7
Q ss_pred CeEEEecCCCCCChhHHHHHHHHHHHHhh
Q 000484 83 SNSILVSGESGAGKTETTKMLMRYLAYLG 111 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~yl~~~~ 111 (1464)
|..++|.|.||||||++++.++..++..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g 29 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG 29 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999888765
No 249
>PLN03025 replication factor C subunit; Provisional
Probab=87.68 E-value=0.67 Score=55.24 Aligned_cols=56 Identities=21% Similarity=0.426 Sum_probs=38.5
Q ss_pred HHHhhccccCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 51 MEQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 51 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
.++|+=..+.++-.|-=.+ ...+.+...+.-..++++|++|+|||+.++.+.+.+.
T Consensus 4 ~~kyrP~~l~~~~g~~~~~--~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAV--SRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred hhhcCCCCHHHhcCcHHHH--HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4456555555544333222 2345566666667899999999999999999998874
No 250
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=87.65 E-value=0.83 Score=53.34 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=24.2
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
+.+.-|-|+|.||||||+.++.+...+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSR 88 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45677889999999999999988777653
No 251
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=87.64 E-value=95 Score=39.75 Aligned_cols=12 Identities=25% Similarity=0.254 Sum_probs=4.6
Q ss_pred HHhhHHHHHHHH
Q 000484 972 LCNSESENQVIR 983 (1464)
Q Consensus 972 l~~Le~en~~L~ 983 (1464)
+.+|+.++.+++
T Consensus 339 v~~L~~eL~~~r 350 (522)
T PF05701_consen 339 VSSLEAELNKTR 350 (522)
T ss_pred HhhHHHHHHHHH
Confidence 333443333333
No 252
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.57 E-value=18 Score=43.58 Aligned_cols=12 Identities=17% Similarity=0.368 Sum_probs=4.7
Q ss_pred HHHHHHHhhHHH
Q 000484 967 RLEEKLCNSESE 978 (1464)
Q Consensus 967 ~Leekl~~Le~e 978 (1464)
..++++.+|+++
T Consensus 432 s~d~~I~dLqEQ 443 (493)
T KOG0804|consen 432 SKDEKITDLQEQ 443 (493)
T ss_pred HHHHHHHHHHHH
Confidence 333344444433
No 253
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=87.56 E-value=0.44 Score=50.04 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=22.1
Q ss_pred EEecCCCCCChhHHHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
|+|.|.||||||+.++.+.+++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999863
No 254
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.55 E-value=6 Score=46.88 Aligned_cols=77 Identities=23% Similarity=0.265 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000484 909 IESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 985 (1464)
Q Consensus 909 ~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~q~ 985 (1464)
...++.+++.++.+-.++.+++.+++++..++.+++.++..+...++++-.+...+...+.-++.+.+.+...+..+
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q 121 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQ 121 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445544445555555555555444444444444444444444444445555554444444444444433
No 255
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=87.54 E-value=0.38 Score=54.64 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=25.4
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
.+..++-+-||||+|||++.|.+++-+--.
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt 66 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPT 66 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCC
Confidence 456788899999999999999999877533
No 256
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=87.53 E-value=0.58 Score=56.77 Aligned_cols=36 Identities=28% Similarity=0.585 Sum_probs=29.6
Q ss_pred HHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 74 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 74 y~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
++.....+.+.+++|+|++|+|||.+++.+++.|..
T Consensus 31 l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 31 LRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 333344667889999999999999999999998864
No 257
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=87.49 E-value=0.32 Score=52.56 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.6
Q ss_pred eEEEecCCCCCChhHHHHHHHHHH
Q 000484 84 NSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 84 QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
+-|+|.|.||||||+.++.+++.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 569999999999999999998865
No 258
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=87.36 E-value=0.35 Score=49.90 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.4
Q ss_pred EEecCCCCCChhHHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
|++.|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999999886654
No 259
>PRK06217 hypothetical protein; Validated
Probab=87.34 E-value=0.4 Score=52.17 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.0
Q ss_pred EEEecCCCCCChhHHHHHHHHHH
Q 000484 85 SILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~~~yl 107 (1464)
-|+|+|-||||||+.++.+.+.|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 49999999999999999988776
No 260
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.33 E-value=57 Score=43.42 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=14.4
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000484 941 EVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSES 977 (1464)
Q Consensus 941 e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~ 977 (1464)
++...++..+++.+..+-.+.+.++.+..+.+.+++.
T Consensus 317 ~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~ 353 (1072)
T KOG0979|consen 317 EDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQA 353 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333344444444444433333
No 261
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=87.24 E-value=0.59 Score=55.79 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=22.0
Q ss_pred eEEEecCCCCCChhHHHHHHHHHH
Q 000484 84 NSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 84 QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
..|+|+|++|||||+..+.++.++
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhC
Confidence 569999999999999999988877
No 262
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=87.17 E-value=0.89 Score=51.23 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=25.5
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
..+..++|.|++|+|||+.++.+.+.+..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999999999999988754
No 263
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.09 E-value=17 Score=42.69 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 909 IESLTAEVDSLKALLLSERQSAEEARKAC 937 (1464)
Q Consensus 909 ~~~Le~e~~~lk~el~~le~~~~~le~e~ 937 (1464)
+..++.+++.++.++...++++.++...+
T Consensus 72 ~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 72 LERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444333333
No 264
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=87.06 E-value=0.5 Score=56.98 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=25.5
Q ss_pred CCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 82 KSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 82 ~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
....|+|+|++|||||++.+.+++++..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4679999999999999999999999864
No 265
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=86.91 E-value=73 Score=37.71 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000484 906 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAE 941 (1464)
Q Consensus 906 ~~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e 941 (1464)
+.++..+...+..++.++..++.+...++..+.+++
T Consensus 215 ~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 215 KEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 333444444444444444444444444444444443
No 266
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=86.91 E-value=0.41 Score=53.52 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=21.6
Q ss_pred CeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 83 SNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
.--+++-|+||||||++.|+|-+-+.
T Consensus 27 gef~vliGpSGsGKTTtLkMINrLie 52 (309)
T COG1125 27 GEFLVLIGPSGSGKTTTLKMINRLIE 52 (309)
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccC
Confidence 34678889999999999999877664
No 267
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=86.90 E-value=0.48 Score=52.41 Aligned_cols=23 Identities=43% Similarity=0.570 Sum_probs=20.1
Q ss_pred EEecCCCCCChhHHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
|-|+|-||||||+.|+.|..-|-
T Consensus 11 IgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhC
Confidence 44689999999999999988875
No 268
>PRK03846 adenylylsulfate kinase; Provisional
Probab=86.71 E-value=0.74 Score=50.76 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=27.2
Q ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 80 EGKSNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 80 ~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
..+...|+|+|.||||||+.++.+...|...
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~ 51 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3577899999999999999999999988653
No 269
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=86.67 E-value=0.48 Score=57.28 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=24.4
Q ss_pred CeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 83 SNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
+--|+|+|++|||||++.+.+++|+..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 447999999999999999999999975
No 270
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=86.48 E-value=0.94 Score=48.09 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHHHhh
Q 000484 68 AIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 111 (1464)
Q Consensus 68 aiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~ 111 (1464)
+|...+...| ...++-+|-++|-||||||+.+..+-+-|...|
T Consensus 9 ~v~~~~r~~~-~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G 51 (197)
T COG0529 9 SVTKQEREAL-KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKG 51 (197)
T ss_pred ccCHHHHHHH-hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcC
Confidence 4444443333 344678999999999999999999999888765
No 271
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=86.47 E-value=56 Score=41.71 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=14.0
Q ss_pred CCCCcccchhHHhhchhHHHHHHhhccc
Q 000484 1303 RECCSFSNGEYVKAGLAELEQWCYDATE 1330 (1464)
Q Consensus 1303 ~~~cs~s~G~qIr~nls~Le~W~~~~~~ 1330 (1464)
++..-|++- ++-.|+++.|.
T Consensus 756 ~DvlVWsN~--------RvirWV~~igL 775 (916)
T KOG0249|consen 756 TDVLVWSND--------RVIRWVQSIGL 775 (916)
T ss_pred ccceEeecH--------HHHHHHHhcCH
Confidence 456668874 55679988874
No 272
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=86.47 E-value=0.51 Score=49.40 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=21.3
Q ss_pred EEEecCCCCCChhHHHHHHHHHH
Q 000484 85 SILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~~~yl 107 (1464)
+|++.|.+|||||+.+|.+-.+|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 273
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=86.47 E-value=1.3 Score=57.78 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 66 VFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 66 ifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
+-.|+..-...+...+.+.++.|+|.+|.|||.+++++++-|...
T Consensus 764 IeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 764 IKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 445554443344445555677899999999999999999998653
No 274
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=86.42 E-value=0.54 Score=50.48 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=23.9
Q ss_pred eEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 84 NSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 84 QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
-.|.|.|.||||||+..+.+++.|...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 368899999999999999999999753
No 275
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=86.41 E-value=34 Score=45.95 Aligned_cols=12 Identities=33% Similarity=0.686 Sum_probs=6.1
Q ss_pred HHHHHHHHhcCC
Q 000484 630 VACEKILDKMGL 641 (1464)
Q Consensus 630 ~~~~~il~~~~~ 641 (1464)
.....+++.+++
T Consensus 85 ~v~~~VV~~L~L 96 (754)
T TIGR01005 85 EILKQVVDKLGL 96 (754)
T ss_pred HHHHHHHHHcCC
Confidence 344555555554
No 276
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=86.41 E-value=0.85 Score=54.12 Aligned_cols=55 Identities=24% Similarity=0.342 Sum_probs=35.8
Q ss_pred HHhhccccCCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 52 EQYKGAQFGELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 52 ~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
+.|+-..+.++..|-- +-...+.....+..-.++++|+.|+|||+.++.+.+.+.
T Consensus 9 ~kyrP~~~~~~~g~~~--~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 9 EKYRPRTLDEIVGQEE--IVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred hhhCCCcHHHhcCcHH--HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3454444444444432 223445555555545689999999999999999988874
No 277
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=86.40 E-value=0.47 Score=55.07 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=24.7
Q ss_pred CCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 82 KSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 82 ~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
....|+|+|+.|||||++.+.++.++-.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cceEEEEECCCccccchHHHHHhhhccc
Confidence 4689999999999999999999887753
No 278
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=86.28 E-value=0.58 Score=49.01 Aligned_cols=24 Identities=42% Similarity=0.491 Sum_probs=22.3
Q ss_pred EEecCCCCCChhHHHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
++|+|+||+|||+.++.++..++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999876
No 279
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=86.23 E-value=6.1 Score=49.24 Aligned_cols=34 Identities=9% Similarity=0.326 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000484 950 KLEDTEEKVGQLQESMQRLEEKLCNSESENQVIR 983 (1464)
Q Consensus 950 ~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~ 983 (1464)
+++..+.++..|..++..-.+.+.+|+..+..++
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444
No 280
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=86.05 E-value=0.45 Score=56.27 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=24.2
Q ss_pred CeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 83 SNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
.-++-+-||||||||.|+..||+-|.+
T Consensus 36 GEtlAlVGESGSGKSvTa~sim~LLp~ 62 (534)
T COG4172 36 GETLALVGESGSGKSVTALSILGLLPS 62 (534)
T ss_pred CCEEEEEecCCCCccHHHHHHHHhcCC
Confidence 457888899999999999999999975
No 281
>PRK01156 chromosome segregation protein; Provisional
Probab=86.02 E-value=1.6e+02 Score=40.61 Aligned_cols=32 Identities=6% Similarity=0.204 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000484 952 EDTEEKVGQLQESMQRLEEKLCNSESENQVIR 983 (1464)
Q Consensus 952 ~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~ 983 (1464)
++...++..+.++...++.++.+++.....++
T Consensus 412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 412 NEINVKLQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555444444
No 282
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=85.74 E-value=0.68 Score=48.08 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=24.4
Q ss_pred EEEecCCCCCChhHHHHHHHHHHHHhh
Q 000484 85 SILVSGESGAGKTETTKMLMRYLAYLG 111 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~~~yl~~~~ 111 (1464)
.|.|.|-+|||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 478999999999999999999998654
No 283
>PHA00729 NTP-binding motif containing protein
Probab=85.73 E-value=1.1 Score=50.08 Aligned_cols=38 Identities=26% Similarity=0.227 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 70 ADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 70 A~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
|...-+.+.. +.-..|+|+|.+|+|||+.|..+.+.+.
T Consensus 5 ~k~~~~~l~~-~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 5 AKKIVSAYNN-NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHHHhc-CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4444444433 3446899999999999999999998764
No 284
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.72 E-value=24 Score=40.40 Aligned_cols=7 Identities=43% Similarity=0.790 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 000484 966 QRLEEKL 972 (1464)
Q Consensus 966 ~~Leekl 972 (1464)
..++.++
T Consensus 106 ~~lq~el 112 (246)
T PF00769_consen 106 EELQEEL 112 (246)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 285
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=85.66 E-value=0.61 Score=50.54 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=20.6
Q ss_pred EEecCCCCCChhHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl 107 (1464)
|+|.|.||||||+-|+.|.+.+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999884
No 286
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=85.64 E-value=1.6e+02 Score=40.49 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHH
Q 000484 1257 QSIVKSLNSYLKTMKVNYVPPFLVRKVFTQIFSFINVQL 1295 (1464)
Q Consensus 1257 ~~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~ina~l 1295 (1464)
...+..+..+-..+...++...+...+..++....|..+
T Consensus 739 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 777 (908)
T COG0419 739 EKALELLEELREKLGKAGLRADILRNLLAQIEAEANEIL 777 (908)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666555555555555555544443
No 287
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.62 E-value=1e+02 Score=38.19 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=7.9
Q ss_pred HHHHHHHHHhcCCCHH
Q 000484 1263 LNSYLKTMKVNYVPPF 1278 (1464)
Q Consensus 1263 L~~~~~~l~~~~v~~~ 1278 (1464)
+..+.++|+.+..-..
T Consensus 621 i~tlrtvlkankqtae 636 (772)
T KOG0999|consen 621 ITTLRTVLKANKQTAE 636 (772)
T ss_pred HHHHHHHHHHhHHHHH
Confidence 4445555555554443
No 288
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.60 E-value=1 Score=55.73 Aligned_cols=54 Identities=19% Similarity=0.404 Sum_probs=38.0
Q ss_pred HHhhccccCCC--CchHHHHHHHHHHHHHhcC-CCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 52 EQYKGAQFGEL--SPHVFAIADVAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 52 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~-~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
+.|+=..+.++ ..|+.+. .+.+...+ -.++++++|+.|.|||+.++.+.+.|.+
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHhCCCCHHHHhChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 45554444443 4566553 44444444 4788999999999999999999999865
No 289
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.54 E-value=87 Score=38.81 Aligned_cols=27 Identities=4% Similarity=0.174 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 906 TEKIESLTAEVDSLKALLLSERQSAEE 932 (1464)
Q Consensus 906 ~~~~~~Le~e~~~lk~el~~le~~~~~ 932 (1464)
+++++-+-.+.+.|..-++.+..+.++
T Consensus 661 k~Elq~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 661 KKELQLIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555444444
No 290
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=85.41 E-value=0.57 Score=48.98 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=19.5
Q ss_pred EEecCCCCCChhHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl 107 (1464)
|+++|.+|||||+.++.+.+-+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 7899999999999999887653
No 291
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=85.35 E-value=28 Score=43.44 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=16.1
Q ss_pred ccchhHHhhchhHHHHHHhhcc
Q 000484 1308 FSNGEYVKAGLAELEQWCYDAT 1329 (1464)
Q Consensus 1308 ~s~G~qIr~nls~Le~W~~~~~ 1329 (1464)
-+.-+-++.-=+++.+|+++.+
T Consensus 706 Psed~Vv~WTnhrvmeWLrsiD 727 (861)
T KOG1899|consen 706 PSEDVVVRWTNHRVMEWLRSID 727 (861)
T ss_pred CChhHHHHhhhHHHHHHHHhcc
Confidence 3444566666788999999876
No 292
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=85.34 E-value=0.69 Score=46.75 Aligned_cols=27 Identities=44% Similarity=0.582 Sum_probs=23.9
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
.....|+++|+=|||||+-+|.+.+.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 566899999999999999999998887
No 293
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=85.33 E-value=8.7 Score=43.26 Aligned_cols=40 Identities=18% Similarity=0.093 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 000484 906 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNT 945 (1464)
Q Consensus 906 ~~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~ 945 (1464)
..+++.|..|.....+++....+.+..++..+..++.+..
T Consensus 38 ~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~ 77 (230)
T PF10146_consen 38 RKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERN 77 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444443333
No 294
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=85.32 E-value=10 Score=33.30 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=29.1
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000484 932 EARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSE 976 (1464)
Q Consensus 932 ~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le 976 (1464)
.+.+++..+...+..+..+|++.+..+..|..++..|++++.++.
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555556666777777777777777777777766544
No 295
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=85.31 E-value=0.65 Score=51.80 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=24.2
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
.+..|.=|.||||||||+.++.++-+..
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 4678899999999999999999887764
No 296
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=85.28 E-value=0.95 Score=55.56 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=28.7
Q ss_pred HHhcCCCeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 77 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 77 m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
....+.+.+++|+|.+|+|||.+++.+++.+...
T Consensus 49 ~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 49 ALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred HhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3445677899999999999999999999988643
No 297
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.23 E-value=0.96 Score=56.57 Aligned_cols=57 Identities=26% Similarity=0.396 Sum_probs=39.2
Q ss_pred HHhhccccCCC--CchHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHHHhh
Q 000484 52 EQYKGAQFGEL--SPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 111 (1464)
Q Consensus 52 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~ 111 (1464)
++|+-..+.++ .+|+-..-..|+ ...+-+|+++++|..|.|||++++.+-+.|-+..
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~---~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~ 63 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAF---TLNKIPQSILLVGASGVGKTTCARIISLCLNCSN 63 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHH---HcCCCCceEEEECCCCccHHHHHHHHHHHHcCcC
Confidence 45655555444 355554333332 2345689999999999999999999999886543
No 298
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=85.20 E-value=0.72 Score=49.92 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=22.9
Q ss_pred CeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 83 SNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
...|+|.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999998764
No 299
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=85.16 E-value=0.5 Score=58.92 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=26.0
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
...+.+-|-||||||||+++..+|.++-.-
T Consensus 33 ~~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 33 EPGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 356788899999999999999999998643
No 300
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=85.11 E-value=1e+02 Score=37.60 Aligned_cols=19 Identities=11% Similarity=-0.101 Sum_probs=8.4
Q ss_pred CCCCcCCccchHHHHHHHH
Q 000484 1063 NLGFSRSKPVAASVIYKCL 1081 (1464)
Q Consensus 1063 ~~~~~~~kp~pA~ilf~cl 1081 (1464)
.+++...+.+-|.-.|...
T Consensus 502 ~l~~~e~~L~~a~s~~~~~ 520 (622)
T COG5185 502 ILEKLELELSEANSKFELS 520 (622)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444344444454444433
No 301
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=85.11 E-value=0.71 Score=49.77 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.5
Q ss_pred CeEEEecCCCCCChhHHHHHHHHHH
Q 000484 83 SNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
++.|+|.|.+|||||+.++.+...+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5689999999999999999988765
No 302
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=85.03 E-value=0.67 Score=50.29 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEecCCCCCChhHHHHHHHHHH
Q 000484 85 SILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~~~yl 107 (1464)
.|+|.|.+|||||+.++.+.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998776
No 303
>PRK06893 DNA replication initiation factor; Validated
Probab=84.96 E-value=1.4 Score=49.84 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 70 ADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 70 A~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
+..+.+.+ ....+-++++.|.||+|||+.+..+.+.+..-
T Consensus 27 ~~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 27 LDSLRKNF-IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred HHHHHHHh-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 33333444 34566789999999999999999999887654
No 304
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=84.95 E-value=0.72 Score=49.50 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.1
Q ss_pred EEecCCCCCChhHHHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
|+|+|+.|+|||+..+.++++|..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999988864
No 305
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=84.91 E-value=0.82 Score=57.48 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 73 AYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 73 Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
.++.+... ..--|+|+|++|||||++...+++++.
T Consensus 233 ~l~~~~~~-~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIRR-PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 34444432 334789999999999999998888774
No 306
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=84.79 E-value=0.83 Score=40.23 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=17.8
Q ss_pred EEEecCCCCCChhHHHHHHHHH
Q 000484 85 SILVSGESGAGKTETTKMLMRY 106 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~~~y 106 (1464)
..+|+|++|||||+..-.+.--
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999887665433
No 307
>PRK04182 cytidylate kinase; Provisional
Probab=84.75 E-value=0.64 Score=50.02 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.6
Q ss_pred EEEecCCCCCChhHHHHHHHHHH
Q 000484 85 SILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~~~yl 107 (1464)
.|+|+|.+|||||+.++.+.+.|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999997755
No 308
>PRK13764 ATPase; Provisional
Probab=84.71 E-value=0.74 Score=58.75 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=24.0
Q ss_pred CeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 83 SNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
...|+|+|.+|||||+++..++.|+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 355999999999999999999999863
No 309
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=84.71 E-value=1.1 Score=57.21 Aligned_cols=33 Identities=18% Similarity=0.425 Sum_probs=27.2
Q ss_pred HHHhcCCCeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 76 AMINEGKSNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 76 ~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
.......++.|+|.||+|+|||..|+++.++.-
T Consensus 79 ~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 79 AALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred HHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 334556789999999999999999999987653
No 310
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=84.68 E-value=0.67 Score=49.71 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=21.5
Q ss_pred CCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 82 KSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 82 ~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
+.--+.+.|.||||||+..|+|+.-.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh
Confidence 45578899999999999999987543
No 311
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=84.67 E-value=0.77 Score=52.47 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.1
Q ss_pred EEecCCCCCChhHHHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
|-|+|-||||||+.++.+...|..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999988888753
No 312
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=84.63 E-value=1.6 Score=53.74 Aligned_cols=63 Identities=19% Similarity=0.183 Sum_probs=40.5
Q ss_pred CCCHHHHHHhhccccCCCCchHHHHHHHHHHHHHhcC-----------CCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 45 LYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEG-----------KSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 45 ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~-----------~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
+.++..+..|-+...-..++=+=+++..+|.++.+-. ....|++.|++|+|||+.++.+-+.+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4566666666554333334444456656665444321 24789999999999999999886654
No 313
>PRK04040 adenylate kinase; Provisional
Probab=84.57 E-value=0.71 Score=50.54 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=22.3
Q ss_pred eEEEecCCCCCChhHHHHHHHHHH
Q 000484 84 NSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 84 QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
.-|+|+|.+|||||+.++.+.+.|
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998887
No 314
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=84.57 E-value=1.2 Score=56.04 Aligned_cols=56 Identities=20% Similarity=0.462 Sum_probs=38.2
Q ss_pred HHhhccccCCC--CchHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 52 EQYKGAQFGEL--SPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 52 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
+.|+-..+.++ .+|+...-..| +...+-.++++++|+.|.|||++++.+.+.|-+.
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~a---i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYT---ILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHH---HHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 34554444444 34554433332 2345568999999999999999999999998654
No 315
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=84.56 E-value=0.88 Score=58.50 Aligned_cols=55 Identities=24% Similarity=0.471 Sum_probs=37.6
Q ss_pred HHhhccccCCC--CchHHHHHHHHHHHHH-hcCCCeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 52 EQYKGAQFGEL--SPHVFAIADVAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 52 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~-~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
++|+=..+.++ ..|+-. .+.++. ..+-.++++++|.+|.|||++++.+.+.|.+.
T Consensus 16 ~KyRP~~f~dliGq~~~v~----~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVR----TLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred hhhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 44554444443 234333 344443 34568999999999999999999999998654
No 316
>PRK08727 hypothetical protein; Validated
Probab=84.55 E-value=1.4 Score=50.03 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=26.0
Q ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 80 EGKSNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 80 ~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
....+.|++.|.||+|||+.+..+...+...
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3455789999999999999999998887654
No 317
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=84.48 E-value=71 Score=41.90 Aligned_cols=10 Identities=30% Similarity=0.614 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q 000484 1197 KQQLTAFLEK 1206 (1464)
Q Consensus 1197 ~qqL~~~~~~ 1206 (1464)
++.|+.+.+.
T Consensus 446 QDELvtfSEe 455 (717)
T PF09730_consen 446 QDELVTFSEE 455 (717)
T ss_pred HHHHHHHHHH
Confidence 4445555554
No 318
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=84.38 E-value=1.5 Score=49.20 Aligned_cols=42 Identities=24% Similarity=0.278 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCC--CeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 69 IADVAYRAMINEGK--SNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 69 iA~~Ay~~m~~~~~--~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
.|-.|-..+..... -..++|.|+||+|||+....+..++...
T Consensus 18 ~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~ 61 (219)
T PF00308_consen 18 LAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ 61 (219)
T ss_dssp HHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 34445555554432 3579999999999999988888887654
No 319
>PRK08116 hypothetical protein; Validated
Probab=84.31 E-value=1.7 Score=50.38 Aligned_cols=45 Identities=20% Similarity=0.218 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhc-CCCeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 66 VFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 66 ifaiA~~Ay~~m~~~-~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
.|+.|..--...... ..+..+++.|.+|+|||..+..|.++|...
T Consensus 96 a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 96 AYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 455555444443322 345679999999999999999999999764
No 320
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=84.19 E-value=84 Score=35.97 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000484 947 LVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQ 980 (1464)
Q Consensus 947 l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~ 980 (1464)
..+.+....+.++++.+++..|+.++..|..+-.
T Consensus 191 m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 191 MQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444444555555555555554444444
No 321
>PRK14527 adenylate kinase; Provisional
Probab=84.19 E-value=0.9 Score=49.78 Aligned_cols=28 Identities=29% Similarity=0.448 Sum_probs=24.2
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
.+...|+|.|.+|||||+.++.+.+.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3568899999999999999999887663
No 322
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=84.06 E-value=1.3e+02 Score=37.96 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=12.6
Q ss_pred HHhhHHHHhHHHHHHHHHhhHHHHH
Q 000484 734 RTSYLTARSSAIQLQTGLRAMVARN 758 (1464)
Q Consensus 734 Rr~y~~lr~a~i~IQs~~Rg~laRk 758 (1464)
|+.+..++.-+.+.|++.-++..++
T Consensus 265 re~~~~L~~D~nK~~~y~~~~~~k~ 289 (581)
T KOG0995|consen 265 REKKARLQDDVNKFQAYVSQMKSKK 289 (581)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhh
Confidence 3344445555555555555554443
No 323
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=83.91 E-value=15 Score=44.30 Aligned_cols=7 Identities=14% Similarity=0.714 Sum_probs=3.0
Q ss_pred CCCCChh
Q 000484 573 PAIFENA 579 (1464)
Q Consensus 573 ~~~fd~~ 579 (1464)
|..||.+
T Consensus 63 p~e~DDP 69 (359)
T PF10498_consen 63 PQEYDDP 69 (359)
T ss_pred CcccCCH
Confidence 4444443
No 324
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=83.78 E-value=0.89 Score=48.33 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.1
Q ss_pred CeEEEecCCCCCChhHHHHHHHH
Q 000484 83 SNSILVSGESGAGKTETTKMLMR 105 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~ 105 (1464)
...|+|.|+||+|||++|=-+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999877765
No 325
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=83.64 E-value=15 Score=41.37 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000484 906 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 984 (1464)
Q Consensus 906 ~~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~q 984 (1464)
..-++++..|.+.|..+..+..+.++.....+..++..+ +..+.+..+..+...++.+++..|+.+...++.
T Consensus 31 e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iI-------kqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENII-------KQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444444444444444444433 333333333444444444444444444444433
No 326
>PRK07667 uridine kinase; Provisional
Probab=83.61 E-value=1.4 Score=48.43 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=23.0
Q ss_pred eEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 84 NSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 84 QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
--|-|+|-||||||+.++.+...|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46679999999999999999998864
No 327
>PRK11281 hypothetical protein; Provisional
Probab=83.61 E-value=75 Score=44.09 Aligned_cols=178 Identities=11% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Q 000484 801 RRVARRELRNLKMAARETGALKEAKDKLEKRVEELTWRLQFEKQLRTNLEE---------EKAQEIAKLQDALQAMQLQV 871 (1464)
Q Consensus 801 ~~~arkel~~lk~~a~e~~~l~~~~~~Le~~~~el~~~l~~e~~~~~~le~---------~k~~e~~~L~~~~~eLe~~l 871 (1464)
.+..-..++....--.+....++..+.+++++.+..+++....++.+.+.+ ........|++.+.+.+.++
T Consensus 58 ~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~L 137 (1113)
T PRK11281 58 DKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQL 137 (1113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccccccccHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Q 000484 872 EEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLT---------------AEVDSLKALLLSERQSAEEARKA 936 (1464)
Q Consensus 872 ee~~~~l~~e~e~l~~~~ee~~~~~~e~~~l~~~~~~~~~Le---------------~e~~~lk~el~~le~~~~~le~e 936 (1464)
++.+..+......+-......++.-.. +.+....+++++ .....++.+...++.+++..+.+
T Consensus 138 q~~Q~~La~~NsqLi~~qT~PERAQ~~---lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~ 214 (1113)
T PRK11281 138 QNAQNDLAEYNSQLVSLQTQPERAQAA---LYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKS 214 (1113)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHH---HHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000484 937 CMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQV 981 (1464)
Q Consensus 937 ~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~ 981 (1464)
+.......+-...+......++.+++..++.|++.+.+...+...
T Consensus 215 l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se 259 (1113)
T PRK11281 215 LEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSE 259 (1113)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 328
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=83.55 E-value=1.6e+02 Score=38.55 Aligned_cols=24 Identities=13% Similarity=0.273 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHH
Q 000484 959 GQLQESMQRLEEKLCNSESENQVI 982 (1464)
Q Consensus 959 ~~L~~e~~~Leekl~~Le~en~~L 982 (1464)
......+.+++..+.++..+...+
T Consensus 576 ek~~~~le~i~~~~~e~~~ele~~ 599 (698)
T KOG0978|consen 576 EKSEAKLEQIQEQYAELELELEIE 599 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 329
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.48 E-value=9 Score=33.81 Aligned_cols=46 Identities=24% Similarity=0.258 Sum_probs=24.3
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000484 940 AEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQ 985 (1464)
Q Consensus 940 ~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~q~ 985 (1464)
+-+.+.-++-+++++.+++..|..+.+.+......|+.+|..+++.
T Consensus 16 AvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 16 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555555555555555555555555556666555543
No 330
>PRK06761 hypothetical protein; Provisional
Probab=83.48 E-value=0.76 Score=53.30 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=23.7
Q ss_pred eEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 84 NSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 84 QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
.-|+|+|.+|||||+.++.+.+.|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 47999999999999999999999864
No 331
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=83.33 E-value=0.88 Score=54.02 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=23.8
Q ss_pred CeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 83 SNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
...|+|+|.+|||||+..+.++.++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~ 174 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVI 174 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 468999999999999999999987753
No 332
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=83.29 E-value=1.2 Score=57.18 Aligned_cols=45 Identities=31% Similarity=0.392 Sum_probs=34.1
Q ss_pred CchHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 63 SPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 63 ~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
.|-|.++-.++|.. +.++.-.|+++|-||||||+.++.+...|..
T Consensus 374 rpeV~~iL~~~~~~--r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 374 FPEVVAELRRTYPP--RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHHHhcc--ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 34455555555543 4456679999999999999999999998865
No 333
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=83.28 E-value=5.9 Score=43.65 Aligned_cols=57 Identities=26% Similarity=0.293 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 917 DSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLC 973 (1464)
Q Consensus 917 ~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~ 973 (1464)
..++++...++++.++..+++..++.....+.++.++...+-++|.++.++|++++.
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333333344444444555555566666666666655543
No 334
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=83.24 E-value=0.79 Score=53.50 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=19.3
Q ss_pred CeEEEecCCCCCChhHHHHHH
Q 000484 83 SNSILVSGESGAGKTETTKML 103 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~ 103 (1464)
.+-|+|+|.||||||+.++.+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l 26 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL 26 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 468999999999999999988
No 335
>PRK15453 phosphoribulokinase; Provisional
Probab=83.19 E-value=0.91 Score=52.31 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=20.7
Q ss_pred CCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 82 KSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 82 ~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
+.=-|.|+|-||||||+.++.+..-|
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34468999999999999988766544
No 336
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=83.18 E-value=11 Score=33.96 Aligned_cols=64 Identities=20% Similarity=0.187 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000484 912 LTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNS 975 (1464)
Q Consensus 912 Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~L 975 (1464)
|+.++..|+..++.+..++...+.....+..+.+.....+...-.++..|..++..|++++.+.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555555555555555555555566666666677777777777776665443
No 337
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=83.17 E-value=0.92 Score=46.75 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.2
Q ss_pred EEecCCCCCChhHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl 107 (1464)
|++.|++|+|||+.++.+.+-+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999888777
No 338
>PRK08356 hypothetical protein; Provisional
Probab=83.10 E-value=0.77 Score=50.50 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.3
Q ss_pred eEEEecCCCCCChhHHHHHHHH
Q 000484 84 NSILVSGESGAGKTETTKMLMR 105 (1464)
Q Consensus 84 QsIiisGeSGaGKT~~~k~~~~ 105 (1464)
--|+|+|.+|||||+.++++-.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999854
No 339
>PRK12704 phosphodiesterase; Provisional
Probab=83.08 E-value=48 Score=42.26 Aligned_cols=14 Identities=7% Similarity=-0.140 Sum_probs=8.0
Q ss_pred HhhHHHHHHHHHhh
Q 000484 1339 ELKHIRQAVGFLVI 1352 (1464)
Q Consensus 1339 ~L~~l~Qa~~lLq~ 1352 (1464)
.+..|+++++.|..
T Consensus 415 ~~a~IV~~ADaLsa 428 (520)
T PRK12704 415 IEAVLVAAADAISA 428 (520)
T ss_pred HHHHHHHHHHHHhC
Confidence 35556666665554
No 340
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=83.07 E-value=1.1 Score=48.06 Aligned_cols=27 Identities=44% Similarity=0.580 Sum_probs=23.8
Q ss_pred EEEecCCCCCChhHHHHHHHHHHHHhh
Q 000484 85 SILVSGESGAGKTETTKMLMRYLAYLG 111 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~~~yl~~~~ 111 (1464)
.|++.|++|+|||+.+..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 478999999999999999999888654
No 341
>PRK13342 recombination factor protein RarA; Reviewed
Probab=83.06 E-value=1.4 Score=54.59 Aligned_cols=43 Identities=26% Similarity=0.476 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 64 PHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 64 PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
.|+... ....+.+...+...++++.|++|+|||+.++.+.+.+
T Consensus 18 ~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 18 EHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 454443 3456667777778899999999999999999987754
No 342
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=83.02 E-value=1.2 Score=56.36 Aligned_cols=59 Identities=29% Similarity=0.438 Sum_probs=42.2
Q ss_pred HHHHHhhccccCCCCchHHHHHH--HHHHHHHhcC-CCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 49 HMMEQYKGAQFGELSPHVFAIAD--VAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 49 ~~~~~y~~~~~~~~~PHifaiA~--~Ay~~m~~~~-~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
-+++.|+=+...++..|-=.|.+ .....+.... ..+-+|++|.+|+|||++.+.+.+-|
T Consensus 8 ~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 8 PWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred ccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 35677877777788888655543 2344444333 35678889999999999999988876
No 343
>PRK14974 cell division protein FtsY; Provisional
Probab=83.01 E-value=1.9 Score=51.39 Aligned_cols=31 Identities=42% Similarity=0.553 Sum_probs=26.8
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHhh
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 111 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~ 111 (1464)
+++..|++.|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3478999999999999999999999887643
No 344
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.99 E-value=0.94 Score=51.90 Aligned_cols=78 Identities=27% Similarity=0.423 Sum_probs=48.8
Q ss_pred ccCcceeecCCeeEEecCCCCCCCCCCHHHHHHhhc--ccc--CCCCchHHHHHHHHHHHHHhcCCCeEEEecCCCCCCh
Q 000484 21 ELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKG--AQF--GELSPHVFAIADVAYRAMINEGKSNSILVSGESGAGK 96 (1464)
Q Consensus 21 ~~~~iYT~~G~~LiavNP~~~l~~ly~~~~~~~y~~--~~~--~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGK 96 (1464)
.-|.=|+..|..=+-||-|+...+ |+-- ++.--. ..+ -.+||=+..+++ ..+--|+|+|.+||||
T Consensus 70 E~Dfs~~~~~~~RfRvN~f~qr~~-~a~v-lR~Ip~~i~~~e~LglP~i~~~~~~---------~~~GLILVTGpTGSGK 138 (353)
T COG2805 70 ELDFSYTLPGVARFRVNAFKQRGG-YALV-LRLIPSKIPTLEELGLPPIVRELAE---------SPRGLILVTGPTGSGK 138 (353)
T ss_pred ceeEEEecCCcceEEeehhhhcCC-cEEE-EeccCccCCCHHHcCCCHHHHHHHh---------CCCceEEEeCCCCCcH
Confidence 345668888877777887765531 1100 000000 000 135665555443 3567999999999999
Q ss_pred hHHHHHHHHHHHH
Q 000484 97 TETTKMLMRYLAY 109 (1464)
Q Consensus 97 T~~~k~~~~yl~~ 109 (1464)
|+|.-.++.|+-.
T Consensus 139 STTlAamId~iN~ 151 (353)
T COG2805 139 STTLAAMIDYINK 151 (353)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999954
No 345
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=82.97 E-value=1.5 Score=51.89 Aligned_cols=48 Identities=27% Similarity=0.296 Sum_probs=34.6
Q ss_pred CCCCchHHHHHHHHHHH----HHhcCCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 60 GELSPHVFAIADVAYRA----MINEGKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 60 ~~~~PHifaiA~~Ay~~----m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
.+++|---+.+...... ...-.....|++.|-+|||||+.++.+...|
T Consensus 106 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 106 EQASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45677444444444444 4445678999999999999999999987655
No 346
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=82.96 E-value=1.1 Score=47.58 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=20.8
Q ss_pred CCeEEEecCCCCCChhHHHHHHHHH
Q 000484 82 KSNSILVSGESGAGKTETTKMLMRY 106 (1464)
Q Consensus 82 ~~QsIiisGeSGaGKT~~~k~~~~y 106 (1464)
+++++++.|.||+|||+....++..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5589999999999999877666544
No 347
>PRK00698 tmk thymidylate kinase; Validated
Probab=82.86 E-value=1.2 Score=49.12 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.6
Q ss_pred CeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 83 SNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
+-.|+|.|.+|||||+.++.+-++|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4589999999999999999999988643
No 348
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=82.69 E-value=2.3 Score=44.27 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=25.7
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
..+=.|+++|+=|||||+-+|-+.+.|..
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 45678999999999999999999999863
No 349
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=82.66 E-value=1.5 Score=47.15 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=21.0
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMR 105 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~ 105 (1464)
..+..|+|.||+|+||+..|+.|-.
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4568999999999999999988765
No 350
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=82.66 E-value=0.93 Score=51.24 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=23.5
Q ss_pred CeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 83 SNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
+=.|+|-|.||||||+..+.++.++..
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 346899999999999999999988754
No 351
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=82.60 E-value=31 Score=39.67 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=11.2
Q ss_pred hhcCCCccChHHHH
Q 000484 598 CAGYPTRRTFYEFL 611 (1464)
Q Consensus 598 ~~Gyp~r~~~~~F~ 611 (1464)
.-|||--++.+.|-
T Consensus 2 ~LGypr~iSmenFr 15 (267)
T PF10234_consen 2 ALGYPRLISMENFR 15 (267)
T ss_pred CCCCCCCCcHHHcC
Confidence 35999888888875
No 352
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=82.54 E-value=1.2 Score=52.08 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhc--------CCCeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 66 VFAIADVAYRAMINE--------GKSNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 66 ifaiA~~Ay~~m~~~--------~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
++.....+...+... .+...|+|.|.+|+|||+++..+..|++..
T Consensus 169 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 169 AWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred HHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 445555555555531 245689999999999999999999999765
No 353
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=82.52 E-value=2.3 Score=49.42 Aligned_cols=47 Identities=32% Similarity=0.389 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHh---------cCCCeEEEecCCCCCChhHHHHHHHHHHHHhh
Q 000484 65 HVFAIADVAYRAMIN---------EGKSNSILVSGESGAGKTETTKMLMRYLAYLG 111 (1464)
Q Consensus 65 HifaiA~~Ay~~m~~---------~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~ 111 (1464)
.+..+..++++.+.. .++.+.|++.|.+|+|||+++-.+..+++..+
T Consensus 45 ~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 45 LLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred HHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 466777777776542 23468999999999999999988888887543
No 354
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=82.50 E-value=1.2 Score=53.67 Aligned_cols=42 Identities=24% Similarity=0.563 Sum_probs=32.5
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHhhCCCCCCCccHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVE 122 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~ 122 (1464)
...|+|-+-|+||||||+..+++.||+-.-+|+-.-++.+|.
T Consensus 562 ~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIr 603 (790)
T KOG0056|consen 562 QPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIR 603 (790)
T ss_pred cCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHH
Confidence 356999999999999999999999999765554333445554
No 355
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=82.47 E-value=1.9 Score=54.96 Aligned_cols=58 Identities=21% Similarity=0.371 Sum_probs=40.7
Q ss_pred HHHHhhccccCCCC--chHHHHHHHHHHHHH-hcCCCeEEEecCCCCCChhHHHHHHHHHHHHhh
Q 000484 50 MMEQYKGAQFGELS--PHVFAIADVAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 111 (1464)
Q Consensus 50 ~~~~y~~~~~~~~~--PHifaiA~~Ay~~m~-~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~ 111 (1464)
..+.|+-..+.++- +|+- ..+.++. ..+-+++++++|+.|.|||+.|+.+.+.|.+.+
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv----~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~ 66 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIK----KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN 66 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHH----HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 34566655555543 4443 3444444 446689999999999999999999999996543
No 356
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=82.37 E-value=1.9e+02 Score=38.66 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhc
Q 000484 542 RFKLQLQSLMETLN 555 (1464)
Q Consensus 542 ~f~~~l~~L~~~l~ 555 (1464)
.+-.++..|.+.|.
T Consensus 153 ~~~eei~kL~e~L~ 166 (775)
T PF10174_consen 153 KADEEIEKLQEMLQ 166 (775)
T ss_pred HHHHHHHHHHHHHh
Confidence 35567777777773
No 357
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.33 E-value=80 Score=39.18 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 816 RETGALKEAKDKLEKRVEELTWRLQFEKQLRTNL 849 (1464)
Q Consensus 816 ~e~~~l~~~~~~Le~~~~el~~~l~~e~~~~~~l 849 (1464)
++++..++.+..|..++..++..+........++
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dl 364 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDL 364 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566666655555444333333333
No 358
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=82.31 E-value=1.2 Score=47.25 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.1
Q ss_pred EEecCCCCCChhHHHHHHHHHHHHhh
Q 000484 86 ILVSGESGAGKTETTKMLMRYLAYLG 111 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl~~~~ 111 (1464)
|.|.|.+|||||+.+..++..|...+
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999997543
No 359
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=82.29 E-value=1.1e+02 Score=38.16 Aligned_cols=10 Identities=30% Similarity=0.514 Sum_probs=4.7
Q ss_pred ccccccCCCC
Q 000484 441 LDEACMFPKS 450 (1464)
Q Consensus 441 Ldee~~~~~~ 450 (1464)
|+|||..+..
T Consensus 110 ~eee~~~s~c 119 (518)
T PF10212_consen 110 LEEECESSLC 119 (518)
T ss_pred HHhhcccccc
Confidence 4455554443
No 360
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=82.27 E-value=1.1 Score=51.81 Aligned_cols=31 Identities=19% Similarity=0.432 Sum_probs=26.6
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHhh
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 111 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~ 111 (1464)
...-.+++.|++|+|||+.++.+-+.|...+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3456899999999999999999999886654
No 361
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=82.25 E-value=1.6 Score=47.38 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.3
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
+..-.|+++|.||||||+.++.+...+..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45569999999999999999999998853
No 362
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=82.24 E-value=0.72 Score=54.62 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=26.9
Q ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 80 EGKSNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 80 ~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
-++.|++=|-||||||||+....+++-+.+-
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 3678999999999999999999988887543
No 363
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=82.20 E-value=26 Score=35.13 Aligned_cols=41 Identities=27% Similarity=0.295 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000484 944 NTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 984 (1464)
Q Consensus 944 ~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~q 984 (1464)
..++.++++.++-++..|+....++++++.+|+.+....-.
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666777777778888888888888888877776655443
No 364
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=82.20 E-value=1 Score=54.02 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.5
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
.+.+.+.|-|+||||||+..+.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 467899999999999999999887654
No 365
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=82.17 E-value=1.2 Score=49.23 Aligned_cols=47 Identities=26% Similarity=0.519 Sum_probs=28.6
Q ss_pred EEecCCCCCChhHHHHHHHHHHHHhhCCCCCCCccHHHHHhhhc-h----HHHhhcC
Q 000484 86 ILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESN-P----VLEAFGN 137 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl~~~~~~~~~~~~~i~~~il~sn-~----ileaFGn 137 (1464)
|.|+|.+|||||+.++++-++ |.. .-+...+...+++.+ + |.+.||.
T Consensus 2 i~itG~~gsGKst~~~~l~~~----g~~-~i~~D~i~~~~~~~~~~~~~~i~~~fG~ 53 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEEL----GAF-GISADRLAKRYTEPDSPILSELVSLLGP 53 (196)
T ss_pred EEEECCCCccHHHHHHHHHHC----CCE-EEecchHHHHHHhcCcHHHHHHHHHhCh
Confidence 789999999999998866543 211 111123444455433 2 6667776
No 366
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=82.15 E-value=1 Score=53.91 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.4
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...+.+.|.||||||||+.++.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 467899999999999999998887654
No 367
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=82.13 E-value=1.1 Score=48.58 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=21.8
Q ss_pred CeEEEecCCCCCChhHHHHHHHHHH
Q 000484 83 SNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
..-|||+|.||||||+.++.+++-+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~ 26 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF 26 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999988765
No 368
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=82.07 E-value=1 Score=48.82 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.9
Q ss_pred EEecCCCCCChhHHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
|+|.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999988763
No 369
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.06 E-value=1 Score=50.57 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...+.+.|.|+||||||+..|.++..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988877543
No 370
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=82.06 E-value=1.8 Score=52.13 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcC-CCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 69 IADVAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 69 iA~~Ay~~m~~~~-~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
-|.+.+..+...+ -+++++|+|+.|.|||+.++.+.++|.+
T Consensus 30 ~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 30 EAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 3455666655544 5899999999999999999999999865
No 371
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.03 E-value=1.9 Score=52.97 Aligned_cols=55 Identities=15% Similarity=0.349 Sum_probs=38.2
Q ss_pred HhhccccCCCCchHHHHHHHHHHHHHhc-CCCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 53 QYKGAQFGELSPHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 53 ~y~~~~~~~~~PHifaiA~~Ay~~m~~~-~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
.|+=..+.+.--|-..+ ..++++... +-++++|++|+.|.|||+.++.+-++|.+
T Consensus 9 k~RP~~~~eiiGq~~~~--~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 9 KYRPKKFADITAQEHIT--RTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred hcCCCcHhhccChHHHH--HHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 44444444443333332 346666655 46789999999999999999999998865
No 372
>PRK06620 hypothetical protein; Validated
Probab=81.99 E-value=1.8 Score=48.37 Aligned_cols=20 Identities=40% Similarity=0.567 Sum_probs=18.0
Q ss_pred eEEEecCCCCCChhHHHHHH
Q 000484 84 NSILVSGESGAGKTETTKML 103 (1464)
Q Consensus 84 QsIiisGeSGaGKT~~~k~~ 103 (1464)
.++++.|++|+|||+.++.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 78999999999999988863
No 373
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=81.99 E-value=66 Score=40.97 Aligned_cols=126 Identities=15% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 853 KAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEE 932 (1464)
Q Consensus 853 k~~e~~~L~~~~~eLe~~lee~~~~l~~e~e~l~~~~ee~~~~~~e~~~l~~~~~~~~~Le~e~~~lk~el~~le~~~~~ 932 (1464)
+......++....+.+.-.++...+.+++........++. ......+++.++...+.++...++++..
T Consensus 20 k~~a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE------------~~~~R~Ele~el~~~e~rL~qrE~rL~q 87 (514)
T TIGR03319 20 KRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEE------------VHKLRAELERELKERRNELQRLERRLLQ 87 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC
Q 000484 933 ARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQALAMS 990 (1464)
Q Consensus 933 le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~q~~~~~~ 990 (1464)
-++.+..-++.+++..+++...++++....++++.++++..++..+....-.....++
T Consensus 88 Ree~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt 145 (514)
T TIGR03319 88 REETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLT 145 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
No 374
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=81.97 E-value=0.75 Score=58.93 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=25.2
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
.+.+.|.|.|+||||||+..|+++++..
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999999988763
No 375
>PRK14528 adenylate kinase; Provisional
Probab=81.91 E-value=1.2 Score=48.75 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.4
Q ss_pred eEEEecCCCCCChhHHHHHHHHHH
Q 000484 84 NSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 84 QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
+-|+|.|.+|||||+.++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999987766
No 376
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=81.90 E-value=1.1 Score=50.16 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.4
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...+.+.|.|+||||||+..|.++..+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457899999999999999999888654
No 377
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=81.89 E-value=1.1 Score=48.99 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=21.8
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRY 106 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~y 106 (1464)
...+.+.|.|+||||||+..+.|+..
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999988877643
No 378
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=81.83 E-value=1.4 Score=44.26 Aligned_cols=25 Identities=44% Similarity=0.724 Sum_probs=23.4
Q ss_pred EEecCCCCCChhHHHHHHHHHHHHh
Q 000484 86 ILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
|+++|.+|+|||..+..+.++|+..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~ 26 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK 26 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 8999999999999999999999864
No 379
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=81.78 E-value=1.1 Score=50.00 Aligned_cols=27 Identities=41% Similarity=0.572 Sum_probs=23.1
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...+.+.|.|+||||||+..+.|+..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999998877544
No 380
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=81.74 E-value=1 Score=46.10 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=21.5
Q ss_pred CCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 82 KSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 82 ~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
..+.+.|.|++|||||+..+.+....
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 56899999999999999887765544
No 381
>PRK10646 ADP-binding protein; Provisional
Probab=81.73 E-value=2.3 Score=44.65 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.6
Q ss_pred CeEEEecCCCCCChhHHHHHHHHHH
Q 000484 83 SNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
.-.|++.|+-|||||+-+|.+.+.|
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3478999999999999999998888
No 382
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=81.71 E-value=98 Score=39.65 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 910 ESLTAEVDSLKALLLSERQSAEEAR 934 (1464)
Q Consensus 910 ~~Le~e~~~lk~el~~le~~~~~le 934 (1464)
++++...+++....+.+...++.|+
T Consensus 233 ~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 233 EEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 383
>PRK04195 replication factor C large subunit; Provisional
Probab=81.64 E-value=1.5 Score=55.49 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 82 KSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 82 ~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
....++|+|++|+|||+.++.+.+.+
T Consensus 38 ~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 38 PKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 37899999999999999999988766
No 384
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=81.62 E-value=1.1 Score=50.04 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...+.+.|.|+||||||+..|.++..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999888877544
No 385
>PRK06835 DNA replication protein DnaC; Validated
Probab=81.62 E-value=2.6 Score=50.35 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=25.5
Q ss_pred CCeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 82 KSNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 82 ~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
....+++.|.+|+|||+.+..|.+.+..-
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 34889999999999999999999988753
No 386
>PRK06921 hypothetical protein; Provisional
Probab=81.60 E-value=1.5 Score=50.72 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=24.8
Q ss_pred CCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 82 KSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 82 ~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
....+++.|++|+|||+.+..|.+.+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 4689999999999999999998887764
No 387
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=81.60 E-value=1.1 Score=53.77 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.7
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
.+.+.+.|.|+||||||+..|.|+..+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 467899999999999999999987654
No 388
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=81.58 E-value=1 Score=53.95 Aligned_cols=27 Identities=37% Similarity=0.561 Sum_probs=23.4
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
.+.+.+.|-||||||||+.++.|+..+
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 467899999999999999998887655
No 389
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.50 E-value=2.1 Score=54.34 Aligned_cols=54 Identities=22% Similarity=0.450 Sum_probs=38.2
Q ss_pred HHhhccccCCC--CchHHHHHHHHHHHHHh-cCCCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 52 EQYKGAQFGEL--SPHVFAIADVAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 52 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~-~~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
++|+-..+.++ .+|+... ..++.. .+-.+++|++|+.|+|||+.++.+.++|.+
T Consensus 8 ~KyRP~~f~diiGq~~~v~~----L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNS----LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45655555554 3555543 333333 356788999999999999999999999865
No 390
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=81.42 E-value=1.7 Score=50.73 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
+.+=.|+|+|.||||||+.+..+..+|
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999999888
No 391
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=81.40 E-value=2.1 Score=46.36 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
...+.+++.|.+|.|||..+..+.+.++.-
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~ 74 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK 74 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC
Confidence 357899999999999999999999988763
No 392
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=81.37 E-value=0.89 Score=53.86 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=22.6
Q ss_pred CeEEEecCCCCCChhHHHHHHHHHH
Q 000484 83 SNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...|+|+|.+|||||+..+.++.++
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccC
Confidence 4699999999999999999988776
No 393
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=81.35 E-value=1.6 Score=47.41 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=23.2
Q ss_pred EEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 85 SILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
-||++|-.|||||+-+|.+.+-|-.-
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHh
Confidence 48999999999999999999988653
No 394
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=81.25 E-value=1.1 Score=51.22 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=22.3
Q ss_pred EEecCCCCCChhHHHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
|+++|-+|||||+.++.+-++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999864
No 395
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=81.23 E-value=1.2 Score=50.17 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=24.0
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...+.+.|.|+||||||+..+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999988766
No 396
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=81.23 E-value=1.2e+02 Score=35.51 Aligned_cols=17 Identities=12% Similarity=0.174 Sum_probs=9.7
Q ss_pred CccchHHHHHHHHhhhc
Q 000484 1069 SKPVAASVIYKCLLHWR 1085 (1464)
Q Consensus 1069 ~kp~pA~ilf~cl~~~~ 1085 (1464)
.+.+-|.-+|..+.-|.
T Consensus 308 qRllFAN~~fk~wtGy~ 324 (401)
T PF06785_consen 308 QRLLFANSQFKTWTGYS 324 (401)
T ss_pred hHHHHhHHHHHHHhccC
Confidence 34555666666555554
No 397
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.19 E-value=1.9 Score=54.87 Aligned_cols=55 Identities=25% Similarity=0.440 Sum_probs=38.0
Q ss_pred HHhhccccCCC--CchHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 52 EQYKGAQFGEL--SPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 52 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
++|+-+.+.++ .+|+-..-..++. ..+-.++++++|++|.|||+.++.+.+.|-+
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~---~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALE---QQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHH---cCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45555444444 3565553333322 3456789999999999999999999999854
No 398
>PRK03839 putative kinase; Provisional
Probab=81.19 E-value=1.2 Score=48.24 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.6
Q ss_pred EEEecCCCCCChhHHHHHHHHHH
Q 000484 85 SILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~~~yl 107 (1464)
-|+|.|-+|||||+.++.+-+-+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999988765
No 399
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=81.18 E-value=1.2 Score=49.51 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=22.9
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...+.+.|.|+||||||+..+.|+..+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999988877554
No 400
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=81.16 E-value=1.5 Score=52.10 Aligned_cols=31 Identities=39% Similarity=0.398 Sum_probs=27.1
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHHhh
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 111 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~~~ 111 (1464)
++.+.|.+.|.+|||||+++..+..+++..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g 142 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG 142 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 3578999999999999999999999987543
No 401
>PRK00106 hypothetical protein; Provisional
Probab=81.13 E-value=84 Score=40.02 Aligned_cols=134 Identities=14% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccccHHHHHHHHHHHHH
Q 000484 839 LQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKETPVIVHDTEKIESLTAEVDS 918 (1464)
Q Consensus 839 l~~e~~~~~~le~~k~~e~~~L~~~~~eLe~~lee~~~~l~~e~e~l~~~~ee~~~~~~e~~~l~~~~~~~~~Le~e~~~ 918 (1464)
+..++....-+++++.....-.++...+.+....+......++....+..+++. +.+.+.++...+..+..
T Consensus 38 ~~A~~~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElEke---------l~eEr~rL~qrE~rL~q 108 (535)
T PRK00106 38 LNAEQEAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQE---------FKSERQELKQIESRLTE 108 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000484 919 LKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQV 981 (1464)
Q Consensus 919 lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~ 981 (1464)
-++.++..++.+++.++++...++.++...++++..+.++..+.++....=+++..|..+-.+
T Consensus 109 REE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak 171 (535)
T PRK00106 109 RATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAR 171 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
No 402
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=81.11 E-value=2 Score=55.81 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=28.4
Q ss_pred HHHhcCCCeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 76 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 76 ~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
.+.....++.|+|.|++|+|||+.++.+.+.....
T Consensus 168 ~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~ 202 (615)
T TIGR02903 168 AKVASPFPQHIILYGPPGVGKTTAARLALEEAKKL 202 (615)
T ss_pred HHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 33455678899999999999999999998876443
No 403
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=81.02 E-value=1.7e+02 Score=37.21 Aligned_cols=29 Identities=17% Similarity=0.069 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 912 LTAEVDSLKALLLSERQSAEEARKACMDA 940 (1464)
Q Consensus 912 Le~e~~~lk~el~~le~~~~~le~e~~~~ 940 (1464)
|...+..++.++..++.+...+.+++++.
T Consensus 315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 343 (498)
T TIGR03007 315 LQIELAEAEAEIASLEARVAELTARIERL 343 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444433333
No 404
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.01 E-value=1.2 Score=49.55 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.9
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...+.+.|.|+||||||+..|.++..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988877544
No 405
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=80.99 E-value=1.3e+02 Score=38.89 Aligned_cols=9 Identities=22% Similarity=0.870 Sum_probs=5.4
Q ss_pred ccceeeccc
Q 000484 647 GKTKVFLRA 655 (1464)
Q Consensus 647 GkTkVFlr~ 655 (1464)
|+++.|+-.
T Consensus 105 grs~~~iNg 113 (563)
T TIGR00634 105 GRSRAYLNG 113 (563)
T ss_pred CceEEEECC
Confidence 566666643
No 406
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=80.97 E-value=11 Score=34.50 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000484 950 KLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQ 984 (1464)
Q Consensus 950 ~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~q 984 (1464)
+++++.+++..|.++.+.+...-..|+.+|.+|++
T Consensus 26 EieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~ 60 (79)
T PRK15422 26 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333333333333333333333334444444433
No 407
>PRK14531 adenylate kinase; Provisional
Probab=80.88 E-value=1.3 Score=48.08 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=22.0
Q ss_pred eEEEecCCCCCChhHHHHHHHHHH
Q 000484 84 NSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 84 QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
|-|++.|.+|||||+.++.+.+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999999998876
No 408
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=80.86 E-value=1.3e+02 Score=35.96 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 910 ESLTAEVDSLKALLLSERQSAEEARKAC 937 (1464)
Q Consensus 910 ~~Le~e~~~lk~el~~le~~~~~le~e~ 937 (1464)
..+..-++.|+.++++++..+...+++.
T Consensus 249 ~~~~~hi~~l~~EveRlrt~l~~Aqk~~ 276 (552)
T KOG2129|consen 249 AAEKLHIDKLQAEVERLRTYLSRAQKSY 276 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666777777766666655543
No 409
>PRK13768 GTPase; Provisional
Probab=80.74 E-value=1.3 Score=50.80 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=24.3
Q ss_pred EEEecCCCCCChhHHHHHHHHHHHHhh
Q 000484 85 SILVSGESGAGKTETTKMLMRYLAYLG 111 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~~~yl~~~~ 111 (1464)
.|+|+|.+|+|||+.+..+..+++..+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
Confidence 689999999999999999999997643
No 410
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=80.72 E-value=1.2 Score=49.65 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.2
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...+.+.|.|+||||||+..|.|+..+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 367899999999999999988887654
No 411
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=80.68 E-value=1.3 Score=51.88 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=25.1
Q ss_pred EEEecCCCCCChhHHHHHHHHHHHHhhC
Q 000484 85 SILVSGESGAGKTETTKMLMRYLAYLGG 112 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~~~yl~~~~~ 112 (1464)
.|++.|++|+|||+.++.+-+++...+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 5999999999999999999999987653
No 412
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=80.67 E-value=1.6 Score=46.43 Aligned_cols=28 Identities=36% Similarity=0.387 Sum_probs=24.5
Q ss_pred eEEEecCCCCCChhHHHHHHHHHHHHhh
Q 000484 84 NSILVSGESGAGKTETTKMLMRYLAYLG 111 (1464)
Q Consensus 84 QsIiisGeSGaGKT~~~k~~~~yl~~~~ 111 (1464)
..|.|.|.||||||+.++.++..|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3688999999999999999999987653
No 413
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=80.67 E-value=0.9 Score=59.47 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=25.6
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
...|.|-|.|+||||||+.+|+++.+..-
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46799999999999999999999887753
No 414
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=80.65 E-value=1.2 Score=53.28 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
.+.+.+-|-||||||||+.++.|+..+
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 467899999999999999999988765
No 415
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=80.65 E-value=29 Score=40.67 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000484 916 VDSLKALLLSERQSAEE 932 (1464)
Q Consensus 916 ~~~lk~el~~le~~~~~ 932 (1464)
+..++..++...++++.
T Consensus 72 ~~~l~~~i~~~~~~i~~ 88 (302)
T PF10186_consen 72 LERLRERIERLRKRIEQ 88 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 416
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=80.63 E-value=53 Score=37.63 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000484 947 LVKKLEDTEEKVGQLQESMQRLEEKLCNSESE 978 (1464)
Q Consensus 947 l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~e 978 (1464)
+..++.+.+.++..|.++...-+.+...++.+
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~e 111 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEE 111 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444333
No 417
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=80.63 E-value=1.1 Score=52.66 Aligned_cols=24 Identities=25% Similarity=0.327 Sum_probs=21.9
Q ss_pred eEEEecCCCCCChhHHHHHHHHHH
Q 000484 84 NSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 84 QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
+.||++|.+|||||+.++.+.+.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 679999999999999999988776
No 418
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.59 E-value=2 Score=55.09 Aligned_cols=55 Identities=27% Similarity=0.434 Sum_probs=39.6
Q ss_pred HHHhhccccCCC--CchHHHHHHHHHHHHHhcC-CCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 51 MEQYKGAQFGEL--SPHVFAIADVAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 51 ~~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~-~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
.++|+-..+.++ .+|+-.+ +.++...+ -.+++|++|+.|.|||++++.+.++|.+
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~----L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAI----LSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHH----HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 355665555443 4676444 34444444 4899999999999999999999999965
No 419
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=80.57 E-value=1.8e+02 Score=37.22 Aligned_cols=55 Identities=31% Similarity=0.298 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 821 LKEAKDKLEKRVEELTWRLQFEKQLRTNLEEEKAQEIAKLQDALQAMQLQVEEAN 875 (1464)
Q Consensus 821 l~~~~~~Le~~~~el~~~l~~e~~~~~~le~~k~~e~~~L~~~~~eLe~~lee~~ 875 (1464)
++.....+-.++.+|++.|...+...+.-+.....|+..|+.+++..+.+.+++.
T Consensus 578 ar~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~ 632 (961)
T KOG4673|consen 578 ARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELI 632 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777777777665555555555555667777777777666665554
No 420
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=80.42 E-value=7.3 Score=35.21 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000484 926 ERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSE 976 (1464)
Q Consensus 926 le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le 976 (1464)
+++++.+|+.+++..+..++++.+.+...+.++..|+..+..|.+++.++.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777777777777777777777777777777777777777776654
No 421
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=80.38 E-value=1.2 Score=51.15 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=20.0
Q ss_pred CeEEEecCCCCCChhHHHHHHHHH
Q 000484 83 SNSILVSGESGAGKTETTKMLMRY 106 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~y 106 (1464)
..-|+|+|+||+||||+|=-+++-
T Consensus 145 GvGVLItG~SG~GKSElALeLi~r 168 (308)
T COG1493 145 GVGVLITGPSGAGKSELALELIKR 168 (308)
T ss_pred eeEEEEECCCCCCHhHHHHHHHHh
Confidence 467999999999999998766654
No 422
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.37 E-value=79 Score=38.45 Aligned_cols=8 Identities=13% Similarity=0.422 Sum_probs=3.1
Q ss_pred EeeeeccC
Q 000484 363 IIGVLDIY 370 (1464)
Q Consensus 363 ~IgiLDi~ 370 (1464)
.+-||-+|
T Consensus 76 mLcilaVP 83 (493)
T KOG0804|consen 76 MLCILAVP 83 (493)
T ss_pred EEEEEecc
Confidence 33444333
No 423
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=80.35 E-value=1.3 Score=49.02 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...+.+.|.|++|||||+..+.++..+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356899999999999999888877543
No 424
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=80.34 E-value=1.2 Score=55.59 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
.+-.++=|-||||||||+.+|.|+..+-
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~ 342 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLP 342 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3556777889999999999999988774
No 425
>PLN02796 D-glycerate 3-kinase
Probab=80.32 E-value=1.3 Score=52.75 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=20.6
Q ss_pred EEEecCCCCCChhHHHHHHHHHHH
Q 000484 85 SILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
-|-|+|.||||||+.++.|...|.
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 388999999999999998877663
No 426
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.31 E-value=1.4 Score=47.73 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...+.+.|.|++|||||+..|.++..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999888876543
No 427
>PRK09087 hypothetical protein; Validated
Probab=80.28 E-value=2.1 Score=48.27 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=19.8
Q ss_pred CCeEEEecCCCCCChhHHHHHHHH
Q 000484 82 KSNSILVSGESGAGKTETTKMLMR 105 (1464)
Q Consensus 82 ~~QsIiisGeSGaGKT~~~k~~~~ 105 (1464)
.+..++|.|+||+|||+.+..+.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~ 66 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWRE 66 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999998886554
No 428
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=80.21 E-value=1.4 Score=48.50 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=17.7
Q ss_pred CCCeEEEecCCCCCChhHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKM 102 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~ 102 (1464)
.+...++|.|.||||||+..+.
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRc 47 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRC 47 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3567899999999999986443
No 429
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=80.21 E-value=1.3 Score=49.26 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...+.+.|.|+||||||+..+.+...+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999888876543
No 430
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.18 E-value=1.3 Score=50.29 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.9
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...+.+.|.|+||||||+..|.++..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988876543
No 431
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=80.17 E-value=2.4 Score=48.95 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=32.0
Q ss_pred CchHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 63 SPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 63 ~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
.|++=.+-+++...+. .+..|++.|++|+|||+.++.+-+.+
T Consensus 4 t~~~~~l~~~~l~~l~---~g~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 4 TDAVKRVTSRALRYLK---SGYPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred CHHHHHHHHHHHHHHh---cCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3556666677766665 35799999999999999999876643
No 432
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=80.12 E-value=1.5 Score=47.60 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=22.5
Q ss_pred EEEecCCCCCChhHHHHHHHHHHHHhh
Q 000484 85 SILVSGESGAGKTETTKMLMRYLAYLG 111 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~~~yl~~~~ 111 (1464)
+++|.|++|+|||..+-.++...+..+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g 27 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG 27 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 489999999999999888887776543
No 433
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=80.11 E-value=2.1e+02 Score=39.46 Aligned_cols=16 Identities=0% Similarity=0.127 Sum_probs=6.9
Q ss_pred hHHHHHHHH-HHhcCCC
Q 000484 452 HETFAQKLY-QTFKSNK 467 (1464)
Q Consensus 452 d~~~~~kl~-~~~~~~~ 467 (1464)
-.|.++.+. ..|+..+
T Consensus 38 KSSIldAI~~ALyG~~~ 54 (908)
T COG0419 38 KSSILDAITFALYGKTP 54 (908)
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 345555543 3344433
No 434
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.08 E-value=25 Score=44.09 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=13.4
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 940 AEVRNTELVKKLEDTEEKVGQLQESMQRLE 969 (1464)
Q Consensus 940 ~e~~~~~l~~~l~~~e~e~~~L~~e~~~Le 969 (1464)
.+..+..+.++|.+....+++|...+..++
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443
No 435
>PRK05439 pantothenate kinase; Provisional
Probab=80.03 E-value=2.9 Score=49.35 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=25.1
Q ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 80 EGKSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 80 ~~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
.+..--|-|+|.+|||||+.|+.+...|..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356677889999999999999988887654
No 436
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=80.02 E-value=1.3 Score=46.64 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=19.8
Q ss_pred CCeEEEecCCCCCChhHHHHHHHH
Q 000484 82 KSNSILVSGESGAGKTETTKMLMR 105 (1464)
Q Consensus 82 ~~QsIiisGeSGaGKT~~~k~~~~ 105 (1464)
..-.|.|+|.||+|||+..|.+..
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHh
Confidence 456899999999999998776544
No 437
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=79.93 E-value=1.7 Score=40.96 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=23.0
Q ss_pred EEecCCCCCChhHHHHHHHHHHHHh
Q 000484 86 ILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
|+++|-.|+|||+.+..+...|+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~ 26 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR 26 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7889999999999999999999873
No 438
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=79.92 E-value=1.3 Score=51.49 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.1
Q ss_pred EEecCCCCCChhHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl 107 (1464)
|.|.|.||||||+.++.+...|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999998877665
No 439
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=79.89 E-value=1.3 Score=48.32 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.7
Q ss_pred EEEecCCCCCChhHHHHHHHHHH
Q 000484 85 SILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~~~yl 107 (1464)
-||++|.||||||+.++.+++..
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 68999999999999999888774
No 440
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=79.89 E-value=2.4 Score=46.18 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=29.2
Q ss_pred HHHHHhc-CCCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 74 YRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 74 y~~m~~~-~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
++++... +-++++++.|++|.|||+.++.+.+.+..
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3444444 46799999999999999999999998864
No 441
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.89 E-value=25 Score=35.53 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000484 946 ELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQV 981 (1464)
Q Consensus 946 ~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~ 981 (1464)
.+..++++++.+.+.+.+-+-.-.+++.+|+.+..-
T Consensus 72 ~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 72 ELEQELEELQQRYQTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 344455555555555444443333444444444433
No 442
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.88 E-value=1.4 Score=49.90 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.0
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...+.+.|.|+||||||+..|.+...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999888876554
No 443
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.87 E-value=2 Score=54.31 Aligned_cols=45 Identities=27% Similarity=0.346 Sum_probs=32.8
Q ss_pred CchHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 63 SPHVFAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 63 ~PHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
..|+.+.-..+.. ..+-.++++++|++|+|||+.++.+.+.+.+.
T Consensus 19 q~~v~~~L~~~i~---~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALR---QGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3455443333322 34567899999999999999999999998654
No 444
>PRK10436 hypothetical protein; Provisional
Probab=79.83 E-value=1.2 Score=55.34 Aligned_cols=34 Identities=32% Similarity=0.496 Sum_probs=26.0
Q ss_pred HHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 74 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 74 y~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
++.+.. ...=-|+|+|.+|||||++...+++++.
T Consensus 210 l~~~~~-~~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 210 FRQALQ-QPQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred HHHHHH-hcCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 444432 2345899999999999999988888874
No 445
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.82 E-value=3 Score=50.76 Aligned_cols=57 Identities=19% Similarity=0.363 Sum_probs=42.3
Q ss_pred HHHhhccccCCCCchHHHHHHHHHHHHHhc-CCCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 51 MEQYKGAQFGELSPHVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 51 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~-~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
.+.|+-..+.++--|-.++ +........ .-++.++++|+.|.|||+.++.+.+.+..
T Consensus 8 ~~k~rP~~~~~iig~~~~~--~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSHIT--NTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HHHHCCCcHHhcCCcHHHH--HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567776677776665443 445555544 45789999999999999999999888865
No 446
>PRK12608 transcription termination factor Rho; Provisional
Probab=79.76 E-value=1.8 Score=51.93 Aligned_cols=43 Identities=19% Similarity=0.099 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 67 FAIADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 67 faiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
-.+..++...|.--++-|-++|.|++|+|||+.++.+.+.+..
T Consensus 117 ~~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 117 DDLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred cchhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3788889999988899999999999999999999999888764
No 447
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=79.73 E-value=1.3 Score=49.33 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...+.+.|.|+||||||+..+.++..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999988876543
No 448
>PRK00023 cmk cytidylate kinase; Provisional
Probab=79.64 E-value=1.4 Score=49.64 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=23.2
Q ss_pred CeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 83 SNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
+-.|.|+|.+|||||+.++.+.+.|-
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998873
No 449
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=79.56 E-value=26 Score=36.78 Aligned_cols=83 Identities=23% Similarity=0.366 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Q 000484 903 VHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEE-----------K 971 (1464)
Q Consensus 903 ~~~~~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Lee-----------k 971 (1464)
+.....+..+..++..++..+..++.+++.++.++...+.....+..+++.++..+....++++++.. +
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e 134 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHE 134 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHHHHHHH
Q 000484 972 LCNSESENQVIRQQ 985 (1464)
Q Consensus 972 l~~Le~en~~L~q~ 985 (1464)
+...+.|..+|+..
T Consensus 135 ~rkke~E~~kLk~r 148 (151)
T PF11559_consen 135 LRKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHHH
No 450
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=79.44 E-value=1.3e+02 Score=40.80 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=11.3
Q ss_pred hhhcCCCHHHHHHHHHHHHH
Q 000484 240 MDIVGISEEEQDAIFRVVAA 259 (1464)
Q Consensus 240 l~~lg~~~~~~~~i~~ilaa 259 (1464)
|+.+-.++.+|.+||.-+++
T Consensus 99 FDkVFGpes~Q~d~Y~~~v~ 118 (1041)
T KOG0243|consen 99 FDKVFGPESQQEDLYDQAVS 118 (1041)
T ss_pred cceeeCcchhHHHHHHHHHH
Confidence 34444455567777765554
No 451
>PLN02348 phosphoribulokinase
Probab=79.44 E-value=2.3 Score=51.33 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=23.4
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
++.=-|-|+|.||||||+.++.|...|-
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4445666999999999999999988884
No 452
>PLN02318 phosphoribulokinase/uridine kinase
Probab=79.41 E-value=2.2 Score=53.94 Aligned_cols=41 Identities=27% Similarity=0.312 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhc-CCCeEEEecCCCCCChhHHHHHHHHH
Q 000484 66 VFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRY 106 (1464)
Q Consensus 66 ifaiA~~Ay~~m~~~-~~~QsIiisGeSGaGKT~~~k~~~~y 106 (1464)
=|-++-+|-+-+... ...-.|-|.|.||||||+.++.|+..
T Consensus 47 g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 47 GFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred chhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 345555665555432 23457788999999999999887644
No 453
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=79.41 E-value=3.7 Score=50.04 Aligned_cols=60 Identities=18% Similarity=0.110 Sum_probs=38.5
Q ss_pred HHHHHHhhccccCCCCchHHHHHHHHHHHHHhc---------CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 48 THMMEQYKGAQFGELSPHVFAIADVAYRAMINE---------GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 48 ~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~---------~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
+..+..|-+...-..+.=+-+++..+|.+..+. ..+..|++.|.+|+|||+.++.+-+.+
T Consensus 6 p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 6 PREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344444444333333445556666666543332 125899999999999999999887665
No 454
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.38 E-value=2.7 Score=52.73 Aligned_cols=54 Identities=24% Similarity=0.463 Sum_probs=37.0
Q ss_pred HHhhccccCCC--CchHHHHHHHHHHHHHhcC-CCeEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 52 EQYKGAQFGEL--SPHVFAIADVAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 52 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~-~~QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
+.|+-..+.+. ++|+ ....+.+...+ -++++|++|+.|+|||+.++.+.+.+-.
T Consensus 6 ~kyRP~~~~divGq~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHCCCCHHHccCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34555544443 4566 33444444444 4578999999999999999999887753
No 455
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=79.38 E-value=1.2 Score=57.71 Aligned_cols=28 Identities=25% Similarity=0.572 Sum_probs=25.1
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
.+.|.+.|.|+||||||+..|+++..+.
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4789999999999999999999988763
No 456
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=79.34 E-value=1.5 Score=46.79 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=23.3
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...+.+.|.|++|||||+..+.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999988887654
No 457
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=79.33 E-value=84 Score=42.45 Aligned_cols=9 Identities=33% Similarity=0.778 Sum_probs=3.7
Q ss_pred CCCccChHH
Q 000484 601 YPTRRTFYE 609 (1464)
Q Consensus 601 yp~r~~~~~ 609 (1464)
|.++++|=|
T Consensus 182 YsvKVSfLE 190 (1041)
T KOG0243|consen 182 YSVKVSFLE 190 (1041)
T ss_pred EEEEEEehh
Confidence 444444433
No 458
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=79.26 E-value=2.4 Score=55.86 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 72 VAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 72 ~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...+.+...++..++++.|++|+|||+.++.+-+++
T Consensus 41 ~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 556777777888899999999999999999998765
No 459
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=79.23 E-value=1.1e+02 Score=34.20 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 000484 908 KIESLTAEVDSL 919 (1464)
Q Consensus 908 ~~~~Le~e~~~l 919 (1464)
+...|.+|++++
T Consensus 218 KCR~L~qENeEl 229 (330)
T KOG2991|consen 218 KCRTLQQENEEL 229 (330)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 460
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.23 E-value=1.5 Score=49.90 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.1
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...+.+.|.|+||||||+..|.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457899999999999999998887654
No 461
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=79.16 E-value=12 Score=41.26 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 000484 928 QSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESENQVIRQQAL 987 (1464)
Q Consensus 928 ~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~en~~L~q~~~ 987 (1464)
++.+.+..+...++++.++..++++.++++...|.+..+.+..+.+.|.+++.+|+.+..
T Consensus 151 ~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 151 EENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 333444444444444455555566666666666666666666666666666666666543
No 462
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=79.13 E-value=1.5 Score=49.73 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...+.+.|.|+||||||+..+.|...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 367899999999999999888876543
No 463
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=79.09 E-value=1.5 Score=49.10 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=21.9
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRY 106 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~y 106 (1464)
...+.+.|.|+||||||+..+.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999988876543
No 464
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=79.09 E-value=1.5 Score=49.91 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.2
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRY 106 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~y 106 (1464)
...+.+.|.|+||||||+..|.|...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999998887643
No 465
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=79.08 E-value=0.95 Score=46.78 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=19.7
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMR 105 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~ 105 (1464)
..+..|+|.||+|+||+..+++|-.
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~ 43 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHR 43 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHH
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHh
Confidence 5678899999999999987775544
No 466
>PRK02496 adk adenylate kinase; Provisional
Probab=79.02 E-value=1.6 Score=47.52 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEecCCCCCChhHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl 107 (1464)
|+|.|.+|||||+.++.+.+.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998766
No 467
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.99 E-value=1.3e+02 Score=39.02 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 814 AARETGALKEAKDKLEKRVEELTWRLQFEKQLRT---NLEEEKAQEIAKLQDALQAMQLQVEEANFRILKEQEAARKAIE 890 (1464)
Q Consensus 814 ~a~e~~~l~~~~~~Le~~~~el~~~l~~e~~~~~---~le~~k~~e~~~L~~~~~eLe~~lee~~~~l~~e~e~l~~~~e 890 (1464)
++.....|.......+.++.++...+........ +-+.-..+....+...+++|..+.++...+...-..+.+...+
T Consensus 59 a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~ 138 (660)
T KOG4302|consen 59 ASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCE 138 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555556666666555443221111 0000112234444455555555544444444444444444444
Q ss_pred hCCCc-------ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 891 EAPPI-------VKETPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKAC 937 (1464)
Q Consensus 891 e~~~~-------~~e~~~l~~~~~~~~~Le~e~~~lk~el~~le~~~~~le~e~ 937 (1464)
++... +.+...+ -...+++++..+..|+++...-.+++.....++
T Consensus 139 ~l~g~~~~~~~~~~D~~dl--sl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I 190 (660)
T KOG4302|consen 139 ELGGPEDLPSFLIADESDL--SLEKLEELREHLNELQKEKSDRLEKVLELKEEI 190 (660)
T ss_pred HhcCCccCCcccccCcccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43221 0010111 124556666666666655554444444444443
No 468
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=78.98 E-value=4.4 Score=48.84 Aligned_cols=50 Identities=24% Similarity=0.158 Sum_probs=35.5
Q ss_pred CCCchHHHHHHHHHHHHHh---------cCCCeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 61 ELSPHVFAIADVAYRAMIN---------EGKSNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 61 ~~~PHifaiA~~Ay~~m~~---------~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
...+|.-.+-...+..+.. -.....|++.|.+|+|||+++..+..++..-
T Consensus 175 ~~~~~~~~v~~~~~~~L~~~l~~~~~~~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~ 233 (407)
T PRK12726 175 VETAHLDDITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQ 233 (407)
T ss_pred cccccHHHHHHHHHHHhcCcEeeCCCceecCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4456765555555554442 2346788999999999999999998887543
No 469
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=78.96 E-value=1.7 Score=47.47 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=22.4
Q ss_pred EEecCCCCCChhHHHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
|+|.|..|||||+.++.+.++|..
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999864
No 470
>PF13479 AAA_24: AAA domain
Probab=78.96 E-value=1.3 Score=49.54 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=18.9
Q ss_pred CCeEEEecCCCCCChhHHHHHH
Q 000484 82 KSNSILVSGESGAGKTETTKML 103 (1464)
Q Consensus 82 ~~QsIiisGeSGaGKT~~~k~~ 103 (1464)
++..|+|.|+||+|||+.++.+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 5788999999999999876654
No 471
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=78.96 E-value=2.9 Score=46.07 Aligned_cols=38 Identities=29% Similarity=0.370 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 72 VAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 72 ~Ay~~m~~~~~~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
+|++.+.. ..++.++|.|..|+|||++.+.+.+.+..-
T Consensus 8 ~a~~~~l~-~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 8 EAVRAILT-SGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHH-CTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHh-cCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 45555554 457889999999999999999999888764
No 472
>PLN03188 kinesin-12 family protein; Provisional
Probab=78.94 E-value=2.6e+02 Score=38.76 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEecCCCCCChhHHH
Q 000484 65 HVFAIADVAYRAMINEGKSNSILVSGESGAGKTETT 100 (1464)
Q Consensus 65 HifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKT~~~ 100 (1464)
.||..+-.-.-.-.-.|-|-||+..|.+|||||.|.
T Consensus 148 dVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM 183 (1320)
T PLN03188 148 DIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTM 183 (1320)
T ss_pred HHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEee
Confidence 566655432222234788999999999999999875
No 473
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=78.90 E-value=1.7 Score=45.09 Aligned_cols=25 Identities=40% Similarity=0.492 Sum_probs=22.4
Q ss_pred eEEEecCCCCCChhHHHHHHHHHHH
Q 000484 84 NSILVSGESGAGKTETTKMLMRYLA 108 (1464)
Q Consensus 84 QsIiisGeSGaGKT~~~k~~~~yl~ 108 (1464)
-.|+|.|.||||||+..|.+-.-|-
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~ 37 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELG 37 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhC
Confidence 4899999999999999999887764
No 474
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=78.89 E-value=1.5 Score=49.85 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=22.9
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...+.+.|.|+||||||+..+.|...+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999988876543
No 475
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=78.82 E-value=1.6 Score=48.44 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...+.+.|.|+||||||+..+.+...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 367899999999999999988876543
No 476
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=78.82 E-value=2.1e+02 Score=37.01 Aligned_cols=13 Identities=15% Similarity=0.409 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 000484 907 EKIESLTAEVDSL 919 (1464)
Q Consensus 907 ~~~~~Le~e~~~l 919 (1464)
..+..|+..++.+
T Consensus 201 ~~~~~l~~~~e~I 213 (560)
T PF06160_consen 201 EETDELEEIMEDI 213 (560)
T ss_pred HHHHHHHHHHHHh
Confidence 3333444443333
No 477
>PRK05642 DNA replication initiation factor; Validated
Probab=78.81 E-value=3.4 Score=46.89 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=22.5
Q ss_pred eEEEecCCCCCChhHHHHHHHHHHHH
Q 000484 84 NSILVSGESGAGKTETTKMLMRYLAY 109 (1464)
Q Consensus 84 QsIiisGeSGaGKT~~~k~~~~yl~~ 109 (1464)
-.++|.|++|+|||+.+..+..++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~ 71 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQ 71 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999988887754
No 478
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.81 E-value=1.8e+02 Score=36.27 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000484 855 QEIAKLQDALQAMQLQVEE 873 (1464)
Q Consensus 855 ~e~~~L~~~~~eLe~~lee 873 (1464)
.+++.|++.+..++..+.+
T Consensus 338 ke~kdLkEkv~~lq~~l~e 356 (654)
T KOG4809|consen 338 KENKDLKEKVNALQAELTE 356 (654)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444454444444444333
No 479
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=78.80 E-value=1.7 Score=46.58 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.9
Q ss_pred eEEEecCCCCCChhHHHHHHHHHH
Q 000484 84 NSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 84 QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
+.|+|.|-+|||||+.++.+-+.|
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998876
No 480
>PRK07952 DNA replication protein DnaC; Validated
Probab=78.69 E-value=2.1 Score=48.74 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=25.6
Q ss_pred CeEEEecCCCCCChhHHHHHHHHHHHHh
Q 000484 83 SNSILVSGESGAGKTETTKMLMRYLAYL 110 (1464)
Q Consensus 83 ~QsIiisGeSGaGKT~~~k~~~~yl~~~ 110 (1464)
.+.++++|.+|+|||+.+..|..+|...
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~ 126 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLR 126 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4699999999999999999999999764
No 481
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=78.64 E-value=60 Score=41.08 Aligned_cols=9 Identities=33% Similarity=0.763 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 000484 1281 RKVFTQIFS 1289 (1464)
Q Consensus 1281 ~Q~f~Qlf~ 1289 (1464)
.++.-|||-
T Consensus 654 ~alm~ql~p 662 (811)
T KOG4364|consen 654 RALMVQLFP 662 (811)
T ss_pred HHHHHHHhh
Confidence 334444443
No 482
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.64 E-value=1.6 Score=48.79 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.1
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
.+ +.+.|.|+||||||+..+.++..+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999988876544
No 483
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=78.59 E-value=1.6 Score=49.36 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=23.0
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
...+.+.|.|+||||||+..|.++..+
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356899999999999999999887654
No 484
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.56 E-value=22 Score=38.24 Aligned_cols=65 Identities=23% Similarity=0.413 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000484 906 TEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVR--NTELVKKLEDTEEKVGQLQESMQRLEE 970 (1464)
Q Consensus 906 ~~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~--~~~l~~~l~~~e~e~~~L~~e~~~Lee 970 (1464)
.+++..+..++..++.++.+++.....++.++..+... .+++...+..++.++..+.+.+..|+.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888888888888888888888888777655 356666666666666666666666554
No 485
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.53 E-value=1.7 Score=46.84 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=21.6
Q ss_pred CCCeEEEecCCCCCChhHHHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLMRY 106 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~~y 106 (1464)
...+.+.|.|+||||||+..|.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999988876543
No 486
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=78.43 E-value=3.6 Score=50.46 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHhhccccCCCCchHHHHHHHHHHHHHhcCC-------------CeEEEecCCCCCChhHHHHHHHHHH
Q 000484 42 LPHLYDTHMMEQYKGAQFGELSPHVFAIADVAYRAMINEGK-------------SNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 42 l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~-------------~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
.+.+..+..+..+-+...-...--+=+++...|++..+-+. .-.|++.|++|+|||+.++.+-+.+
T Consensus 62 ~~~~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 62 LSYLPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ccCCCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
No 487
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=78.41 E-value=1.6 Score=48.69 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCChhHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLM 104 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~ 104 (1464)
...+.+.|.|+||||||+..|.|.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLA 52 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
No 488
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=78.37 E-value=1.7 Score=48.31 Aligned_cols=24 Identities=21% Similarity=0.588 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCChhHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLM 104 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~ 104 (1464)
.+.+.+.|.|+||||||+..+.++
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIA 49 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 489
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=78.31 E-value=1.5 Score=49.58 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCChhHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLM 104 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~ 104 (1464)
...+.+.|.|+||||||+..|.++
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLIS 47 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHc
No 490
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=78.31 E-value=1.6 Score=53.79 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=0.0
Q ss_pred EEecCCCCCChhHHHHHHHHHH
Q 000484 86 ILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 86 IiisGeSGaGKT~~~k~~~~yl 107 (1464)
|+|+|.+|||||+|..-+++++
T Consensus 261 iLvTGPTGSGKTTTLY~~L~~l 282 (500)
T COG2804 261 ILVTGPTGSGKTTTLYAALSEL 282 (500)
T ss_pred EEEeCCCCCCHHHHHHHHHHHh
No 491
>PRK06526 transposase; Provisional
Probab=78.22 E-value=1.8 Score=49.67 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=0.0
Q ss_pred CCeEEEecCCCCCChhHHHHHHHHHHHHhh
Q 000484 82 KSNSILVSGESGAGKTETTKMLMRYLAYLG 111 (1464)
Q Consensus 82 ~~QsIiisGeSGaGKT~~~k~~~~yl~~~~ 111 (1464)
..+.+++.|.+|+|||+.+..+...++..+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g 126 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAG 126 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCC
No 492
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=78.16 E-value=2.6e+02 Score=37.67 Aligned_cols=225 Identities=12% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Q 000484 766 TKAAIIIEAYLRRHTACSYYKSLKKAAVITQCGWRRRVARRELRNLKMAARETGALKEAKDK--------LEKRVEELTW 837 (1464)
Q Consensus 766 ~~aAi~IQ~~~R~~~~rr~~~~~~~a~~~iQs~~R~~~arkel~~lk~~a~e~~~l~~~~~~--------Le~~~~el~~ 837 (1464)
+.|+.+.-.....|.....-.+...+....+ |-.......-+++..++.++...+.++.- .+.++.++..
T Consensus 167 ~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~--~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ 244 (754)
T TIGR01005 167 KLAAAIPDAIAAAYIAGQGAAKSESNTAAAD--FLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNT 244 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Q 000484 838 RLQFEKQLRTNLEEEKAQEIAKLQ-------------------DALQAMQLQVEEANFRILKEQEAARKAIEEAPPIVKE 898 (1464)
Q Consensus 838 ~l~~e~~~~~~le~~k~~e~~~L~-------------------~~~~eLe~~lee~~~~l~~e~e~l~~~~ee~~~~~~e 898 (1464)
++...+.++...+.........+. ..+.+|..++.++..++.+.........-+......+
T Consensus 245 ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~q 324 (754)
T TIGR01005 245 ELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSS 324 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000484 899 TPVIVHDTEKIESLTAEVDSLKALLLSERQSAEEARKACMDAEVRNTELVKKLEDTEEKVGQLQESMQRLEEKLCNSESE 978 (1464)
Q Consensus 899 ~~~l~~~~~~~~~Le~e~~~lk~el~~le~~~~~le~e~~~~e~~~~~l~~~l~~~e~e~~~L~~e~~~Leekl~~Le~e 978 (1464)
.......+.+|+.++...+...-+.....++.+...-...+.....+...+.+..+|+.+.+..++-...+...
T Consensus 325 ------i~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r 398 (754)
T TIGR01005 325 ------LADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTN 398 (754)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhcCCCcccccc
Q 000484 979 NQVIRQQALAMSPTGKSLSA 998 (1464)
Q Consensus 979 n~~L~q~~~~~~p~~~~~~~ 998 (1464)
.+..+.......+.....++
T Consensus 399 ~~e~~~~~~~~~~~~~vi~~ 418 (754)
T TIGR01005 399 YRQAASRQNYVPVDARVASP 418 (754)
T ss_pred HHHHHHhhcCCCCCcEEecc
No 493
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=78.11 E-value=1.7 Score=48.20 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCChhHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLM 104 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~ 104 (1464)
...+.+.|.|+||||||+..+.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILA 47 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 494
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=78.10 E-value=1.8 Score=48.57 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=0.0
Q ss_pred EEEecCCCCCChhHHHHHHHHHH
Q 000484 85 SILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 85 sIiisGeSGaGKT~~~k~~~~yl 107 (1464)
.|.|.|.||||||+.++.+...|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
No 495
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.10 E-value=1.7 Score=48.67 Aligned_cols=24 Identities=42% Similarity=0.535 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCChhHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLM 104 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~ 104 (1464)
...+.+.|.|+||||||+..+.|.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~ 47 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLT 47 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
No 496
>PRK10908 cell division protein FtsE; Provisional
Probab=78.08 E-value=1.7 Score=48.77 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCChhHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLM 104 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~ 104 (1464)
...+.+.|.|+||||||+..+.|.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLIC 49 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 497
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=78.08 E-value=3.3 Score=48.90 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhc-CCCeEEEecCCCCCChhHHHHHHHHHH
Q 000484 65 HVFAIADVAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYL 107 (1464)
Q Consensus 65 HifaiA~~Ay~~m~~~-~~~QsIiisGeSGaGKT~~~k~~~~yl 107 (1464)
|+-..-..+....... +..+.+++.|++|+|||..++.+.+.+
T Consensus 11 ~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 11 KVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh
No 498
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.07 E-value=1.7 Score=48.24 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCChhHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLM 104 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~ 104 (1464)
...+.+.|.|+||||||+..+.|.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~ 47 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMIL 47 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
No 499
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=78.02 E-value=1.7 Score=48.30 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCChhHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLM 104 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~ 104 (1464)
...+.+.|.|+||||||+..|.+.
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCIN 47 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
No 500
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=77.97 E-value=1.7 Score=49.69 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCChhHHHHHHH
Q 000484 81 GKSNSILVSGESGAGKTETTKMLM 104 (1464)
Q Consensus 81 ~~~QsIiisGeSGaGKT~~~k~~~ 104 (1464)
...+.+.|.|+||||||+..|.++
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLN 48 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Done!