Query 000487
Match_columns 1463
No_of_seqs 94 out of 107
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 10:27:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000487.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000487hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 98.7 3.3E-08 7.2E-13 118.1 10.5 190 1047-1334 196-414 (966)
2 KOG4626 O-linked N-acetylgluco 98.7 7.7E-08 1.7E-12 115.1 12.7 118 1089-1226 292-409 (966)
3 KOG1840 Kinesin light chain [C 98.6 6.6E-07 1.4E-11 107.2 16.8 163 1049-1285 255-419 (508)
4 PF13424 TPR_12: Tetratricopep 98.5 1.8E-07 3.8E-12 83.1 6.1 75 1081-1177 3-78 (78)
5 PF14938 SNAP: Soluble NSF att 98.5 1.7E-06 3.7E-11 95.2 13.3 121 1049-1220 49-170 (282)
6 KOG1840 Kinesin light chain [C 98.4 5.1E-06 1.1E-10 99.8 16.4 180 1031-1287 197-379 (508)
7 TIGR00990 3a0801s09 mitochondr 98.1 3E-05 6.4E-10 93.5 14.7 71 1048-1135 307-377 (615)
8 PF14938 SNAP: Soluble NSF att 98.1 4.1E-05 8.8E-10 84.6 14.0 121 1093-1286 45-166 (282)
9 KOG1130 Predicted G-alpha GTPa 98.0 4.2E-05 9.1E-10 89.5 13.0 157 1051-1267 33-189 (639)
10 TIGR00990 3a0801s09 mitochondr 97.8 0.00022 4.8E-09 86.1 14.9 83 1050-1174 346-428 (615)
11 PF13424 TPR_12: Tetratricopep 97.8 5.9E-05 1.3E-09 67.1 7.1 78 1119-1265 1-78 (78)
12 KOG1130 Predicted G-alpha GTPa 97.7 0.00025 5.4E-09 83.3 12.3 165 1044-1288 164-328 (639)
13 KOG1173 Anaphase-promoting com 97.7 0.00014 3.1E-09 87.6 10.3 89 1084-1220 415-504 (611)
14 PRK11788 tetratricopeptide rep 97.6 0.0011 2.3E-08 74.1 15.0 18 1203-1220 178-195 (389)
15 TIGR02521 type_IV_pilW type IV 97.4 0.0023 5E-08 63.4 13.3 83 1049-1173 45-127 (234)
16 CHL00033 ycf3 photosystem I as 97.4 0.00069 1.5E-08 68.8 8.9 99 1049-1179 49-147 (168)
17 PRK11189 lipoprotein NlpI; Pro 97.3 0.0023 4.9E-08 71.5 13.3 66 1050-1135 79-144 (296)
18 KOG1126 DNA-binding cell divis 97.3 0.00044 9.6E-09 84.6 8.0 34 1077-1110 347-380 (638)
19 PRK11788 tetratricopeptide rep 97.3 0.0023 5E-08 71.4 13.0 88 1049-1174 49-136 (389)
20 CHL00033 ycf3 photosystem I as 97.3 0.0011 2.3E-08 67.5 9.1 100 1077-1220 29-128 (168)
21 PF13414 TPR_11: TPR repeat; P 97.3 0.00063 1.4E-08 59.1 6.3 64 1083-1174 3-67 (69)
22 TIGR02521 type_IV_pilW type IV 97.3 0.0032 6.9E-08 62.5 11.8 71 1076-1174 24-94 (234)
23 PRK11189 lipoprotein NlpI; Pro 97.2 0.0038 8.3E-08 69.7 13.5 88 1049-1174 40-127 (296)
24 KOG1126 DNA-binding cell divis 97.1 0.0011 2.4E-08 81.2 8.4 82 1049-1172 469-550 (638)
25 PRK11447 cellulose synthase su 97.1 0.0048 1E-07 80.5 14.5 66 1049-1134 365-430 (1157)
26 KOG1586 Protein required for f 97.1 0.065 1.4E-06 60.5 20.8 113 1050-1179 29-148 (288)
27 PRK02603 photosystem I assembl 97.0 0.0021 4.5E-08 65.9 7.8 102 1046-1179 46-147 (172)
28 PRK02603 photosystem I assembl 96.9 0.004 8.6E-08 63.9 8.5 72 1078-1174 30-101 (172)
29 PRK11447 cellulose synthase su 96.7 0.023 5.1E-07 74.3 16.0 95 1049-1174 317-414 (1157)
30 TIGR02917 PEP_TPR_lipo putativ 96.6 0.012 2.6E-07 70.1 11.1 71 1049-1133 615-686 (899)
31 TIGR02917 PEP_TPR_lipo putativ 96.4 0.053 1.2E-06 64.8 15.2 46 1084-1135 466-511 (899)
32 PRK12370 invasion protein regu 96.3 0.074 1.6E-06 64.6 15.8 113 1047-1220 273-387 (553)
33 PRK04841 transcriptional regul 96.3 0.16 3.5E-06 63.9 19.0 120 1050-1220 506-627 (903)
34 cd00189 TPR Tetratricopeptide 96.2 0.03 6.5E-07 46.4 8.0 83 1049-1173 14-96 (100)
35 KOG2002 TPR-containing nuclear 96.1 0.27 5.9E-06 63.4 19.6 155 1049-1267 284-447 (1018)
36 TIGR03302 OM_YfiO outer membra 96.0 0.051 1.1E-06 57.4 11.1 169 1049-1287 47-215 (235)
37 PRK15174 Vi polysaccharide exp 96.0 0.14 3.1E-06 63.8 16.4 51 1048-1112 89-139 (656)
38 PRK15359 type III secretion sy 95.8 0.023 5E-07 57.6 6.9 85 1048-1174 37-121 (144)
39 cd00189 TPR Tetratricopeptide 95.8 0.028 6E-07 46.6 6.1 62 1085-1174 2-63 (100)
40 PRK04841 transcriptional regul 95.5 0.11 2.4E-06 65.3 12.7 98 1050-1178 467-564 (903)
41 KOG2002 TPR-containing nuclear 95.5 0.063 1.4E-06 68.9 10.5 138 1049-1282 626-764 (1018)
42 PRK09782 bacteriophage N4 rece 95.4 0.098 2.1E-06 68.4 12.1 58 473-539 36-93 (987)
43 PLN03088 SGT1, suppressor of 95.3 0.031 6.6E-07 64.7 6.6 86 1048-1175 15-100 (356)
44 PRK12370 invasion protein regu 95.3 0.054 1.2E-06 65.7 8.9 86 1047-1174 316-401 (553)
45 KOG1173 Anaphase-promoting com 95.2 0.18 3.8E-06 62.2 12.8 161 1050-1266 327-488 (611)
46 KOG0548 Molecular co-chaperone 95.2 0.38 8.3E-06 59.0 15.5 203 1047-1334 236-452 (539)
47 TIGR02795 tol_pal_ybgF tol-pal 95.2 0.047 1E-06 50.5 6.2 91 1049-1175 16-106 (119)
48 TIGR02552 LcrH_SycD type III s 95.2 0.084 1.8E-06 50.9 8.1 88 1049-1178 31-118 (135)
49 PRK15174 Vi polysaccharide exp 95.2 0.33 7.1E-06 60.6 15.2 214 1049-1375 226-450 (656)
50 KOG0550 Molecular chaperone (D 95.1 0.12 2.6E-06 61.9 10.4 146 1031-1218 208-353 (486)
51 KOG1125 TPR repeat-containing 94.9 0.032 6.9E-07 68.3 5.4 124 1033-1220 436-559 (579)
52 KOG1155 Anaphase-promoting com 94.6 0.41 8.8E-06 58.3 13.1 51 1050-1114 345-395 (559)
53 KOG1941 Acetylcholine receptor 94.6 0.37 8.1E-06 57.3 12.6 138 1084-1288 207-344 (518)
54 PF13414 TPR_11: TPR repeat; P 94.5 0.066 1.4E-06 46.6 4.9 51 1048-1112 16-67 (69)
55 PF09986 DUF2225: Uncharacteri 94.4 0.16 3.5E-06 55.8 8.7 89 1048-1136 90-178 (214)
56 KOG0553 TPR repeat-containing 94.4 0.26 5.6E-06 57.1 10.6 92 1090-1263 88-179 (304)
57 PRK09782 bacteriophage N4 rece 94.3 0.16 3.4E-06 66.6 9.7 103 1049-1220 590-692 (987)
58 TIGR02795 tol_pal_ybgF tol-pal 94.2 0.13 2.7E-06 47.7 6.5 67 1084-1175 3-69 (119)
59 PRK15359 type III secretion sy 94.2 0.29 6.2E-06 49.8 9.4 97 1088-1266 29-125 (144)
60 PRK10370 formate-dependent nit 94.2 0.12 2.7E-06 55.3 7.2 107 1048-1220 52-159 (198)
61 KOG2003 TPR repeat-containing 93.9 1.3 2.7E-05 54.0 15.1 22 671-692 251-273 (840)
62 KOG1941 Acetylcholine receptor 93.7 1.1 2.3E-05 53.7 13.8 131 1089-1287 128-258 (518)
63 TIGR03302 OM_YfiO outer membra 93.5 0.33 7.2E-06 51.4 8.8 134 1049-1220 84-218 (235)
64 TIGR02552 LcrH_SycD type III s 93.3 0.34 7.5E-06 46.7 7.9 83 1084-1220 18-100 (135)
65 KOG0553 TPR repeat-containing 93.1 0.22 4.8E-06 57.6 7.2 90 1047-1178 93-182 (304)
66 PF13432 TPR_16: Tetratricopep 92.5 0.14 3.1E-06 44.3 3.6 59 1088-1174 2-60 (65)
67 PRK14574 hmsH outer membrane p 92.3 2.3 5.1E-05 55.2 15.5 83 1050-1175 49-132 (822)
68 PLN03088 SGT1, suppressor of 92.2 0.29 6.3E-06 56.9 6.7 97 1088-1266 7-103 (356)
69 PF13176 TPR_7: Tetratricopept 92.2 0.14 3E-06 41.1 2.9 34 1085-1118 1-34 (36)
70 PLN03098 LPA1 LOW PSII ACCUMUL 92.1 0.15 3.2E-06 61.8 4.3 69 1081-1174 73-141 (453)
71 KOG3617 WD40 and TPR repeat-co 90.9 6.8 0.00015 50.9 16.6 302 1015-1354 894-1296(1416)
72 PF13432 TPR_16: Tetratricopep 90.5 0.32 6.9E-06 42.2 3.7 50 1049-1112 11-60 (65)
73 PF00515 TPR_1: Tetratricopept 90.2 0.27 5.8E-06 38.0 2.8 31 1083-1113 1-31 (34)
74 cd05804 StaR_like StaR_like; a 90.2 0.49 1.1E-05 52.7 5.8 84 1050-1171 129-212 (355)
75 PF07719 TPR_2: Tetratricopept 89.2 0.32 6.9E-06 37.1 2.5 31 1084-1114 2-32 (34)
76 KOG1125 TPR repeat-containing 89.0 0.45 9.9E-06 58.8 4.8 84 1083-1213 430-513 (579)
77 PRK10049 pgaA outer membrane p 89.0 7.5 0.00016 49.7 15.5 77 1052-1135 213-291 (765)
78 PF08631 SPO22: Meiosis protei 88.7 19 0.00041 40.7 16.9 86 1046-1140 4-94 (278)
79 PF06552 TOM20_plant: Plant sp 88.6 5.4 0.00012 44.0 12.0 76 1052-1140 8-86 (186)
80 PF12895 Apc3: Anaphase-promot 88.2 1.8 3.8E-05 39.7 7.0 48 1049-1108 3-50 (84)
81 KOG1586 Protein required for f 87.9 12 0.00026 43.2 14.5 32 1254-1287 94-125 (288)
82 PF13374 TPR_10: Tetratricopep 87.5 0.52 1.1E-05 37.0 2.7 34 1083-1116 2-35 (42)
83 COG3063 PilF Tfp pilus assembl 86.9 2 4.2E-05 49.0 7.6 111 1076-1220 28-154 (250)
84 PRK10803 tol-pal system protei 86.8 0.97 2.1E-05 51.2 5.4 91 1049-1175 157-247 (263)
85 PF13181 TPR_8: Tetratricopept 86.7 0.55 1.2E-05 36.1 2.4 32 1083-1114 1-32 (34)
86 KOG0547 Translocase of outer m 86.5 3.6 7.8E-05 50.9 10.0 40 1078-1117 321-360 (606)
87 PF00515 TPR_1: Tetratricopept 85.1 0.98 2.1E-05 34.9 3.1 31 1123-1175 1-31 (34)
88 PF12862 Apc5: Anaphase-promot 84.7 2.1 4.5E-05 41.0 5.7 55 1080-1134 38-92 (94)
89 KOG1127 TPR repeat-containing 83.6 6.8 0.00015 51.7 11.0 168 1033-1220 492-686 (1238)
90 PF12862 Apc5: Anaphase-promot 83.5 5.2 0.00011 38.4 7.9 81 1154-1285 11-91 (94)
91 PF13176 TPR_7: Tetratricopept 83.4 1.3 2.8E-05 35.6 3.2 29 1125-1175 1-29 (36)
92 PF13429 TPR_15: Tetratricopep 83.2 11 0.00024 41.5 11.4 45 1086-1131 81-125 (280)
93 PRK10370 formate-dependent nit 82.9 2.1 4.6E-05 46.1 5.6 89 1048-1178 86-177 (198)
94 KOG1982 Nuclear 5'-3' exoribon 82.3 42 0.0009 40.6 16.0 129 305-440 192-334 (359)
95 cd05804 StaR_like StaR_like; a 82.2 2 4.4E-05 47.9 5.3 87 1084-1220 115-201 (355)
96 KOG0543 FKBP-type peptidyl-pro 82.1 19 0.00041 43.8 13.3 122 1155-1332 222-350 (397)
97 PF13371 TPR_9: Tetratricopept 81.4 3.2 6.9E-05 36.5 5.2 59 1089-1175 1-59 (73)
98 COG3063 PilF Tfp pilus assembl 81.2 2.2 4.8E-05 48.5 5.1 85 1052-1176 86-170 (250)
99 smart00028 TPR Tetratricopepti 81.1 1.7 3.8E-05 29.8 2.8 30 1084-1113 2-31 (34)
100 PRK15363 pathogenicity island 79.9 11 0.00024 40.6 9.5 63 1084-1174 36-98 (157)
101 PF09976 TPR_21: Tetratricopep 79.8 2.7 5.8E-05 42.4 4.7 85 1048-1172 61-145 (145)
102 KOG0686 COP9 signalosome, subu 79.6 72 0.0016 39.5 16.8 87 1044-1135 116-209 (466)
103 KOG0547 Translocase of outer m 79.0 36 0.00078 42.8 14.3 83 1049-1173 408-490 (606)
104 PF06552 TOM20_plant: Plant sp 78.6 16 0.00034 40.5 10.3 60 1046-1115 46-105 (186)
105 PF13429 TPR_15: Tetratricopep 77.4 7.3 0.00016 42.9 7.6 20 750-769 12-31 (280)
106 PF10602 RPN7: 26S proteasome 75.9 14 0.00029 39.8 8.8 80 1051-1138 12-91 (177)
107 PF14559 TPR_19: Tetratricopep 75.9 2.1 4.5E-05 37.1 2.4 53 1048-1114 4-56 (68)
108 PF12688 TPR_5: Tetratrico pep 75.8 10 0.00022 38.7 7.5 77 1051-1138 17-97 (120)
109 PF13374 TPR_10: Tetratricopep 75.3 3.2 6.9E-05 32.6 3.0 34 1123-1178 2-35 (42)
110 KOG2076 RNA polymerase III tra 74.9 56 0.0012 43.3 15.1 86 1254-1354 428-539 (895)
111 KOG1155 Anaphase-promoting com 74.9 6.9 0.00015 48.3 7.0 61 1032-1115 438-498 (559)
112 PRK15363 pathogenicity island 74.6 17 0.00038 39.2 9.2 100 1031-1143 18-123 (157)
113 PLN03081 pentatricopeptide (PP 74.2 25 0.00055 44.2 11.9 35 736-770 143-182 (697)
114 PLN03098 LPA1 LOW PSII ACCUMUL 74.1 3.6 7.7E-05 50.4 4.4 57 1119-1220 71-127 (453)
115 KOG1585 Protein required for f 73.9 83 0.0018 37.0 14.6 20 1324-1343 206-225 (308)
116 PRK10866 outer membrane biogen 73.9 49 0.0011 37.2 12.9 73 1049-1135 46-118 (243)
117 cd09034 BRO1_Alix_like Protein 73.3 49 0.0011 38.4 13.0 48 1074-1121 109-159 (345)
118 PF12309 KBP_C: KIF-1 binding 73.1 97 0.0021 37.5 15.7 160 1044-1220 140-315 (371)
119 PF09976 TPR_21: Tetratricopep 72.6 27 0.00059 35.3 9.6 80 1049-1133 6-95 (145)
120 PF13371 TPR_9: Tetratricopept 72.5 7.7 0.00017 34.1 5.1 51 1049-1113 9-59 (73)
121 PF00244 14-3-3: 14-3-3 protei 71.9 85 0.0018 35.5 14.1 112 1243-1374 84-202 (236)
122 PF07719 TPR_2: Tetratricopept 71.8 4.6 9.9E-05 30.7 3.1 30 1124-1175 2-31 (34)
123 KOG2003 TPR repeat-containing 71.1 1.7E+02 0.0036 36.9 16.9 46 1050-1109 505-550 (840)
124 PRK14720 transcript cleavage f 69.8 22 0.00048 47.2 10.2 153 1089-1343 37-191 (906)
125 PF05053 Menin: Menin; InterP 69.2 35 0.00077 43.3 11.2 87 1067-1177 248-350 (618)
126 KOG0548 Molecular co-chaperone 68.5 57 0.0012 41.2 12.6 100 1090-1215 365-473 (539)
127 KOG3785 Uncharacterized conser 67.9 31 0.00066 42.0 9.9 79 1096-1220 35-113 (557)
128 KOG1585 Protein required for f 67.8 52 0.0011 38.6 11.3 73 1156-1282 46-118 (308)
129 KOG0550 Molecular chaperone (D 67.6 16 0.00034 44.9 7.7 92 1090-1222 210-304 (486)
130 PF05276 SH3BP5: SH3 domain-bi 66.6 1.6E+02 0.0034 34.1 14.8 187 1042-1267 21-218 (239)
131 PRK10153 DNA-binding transcrip 65.9 28 0.00061 43.3 9.7 18 1048-1065 355-372 (517)
132 KOG1129 TPR repeat-containing 65.5 49 0.0011 40.0 10.9 91 1084-1179 224-317 (478)
133 PLN03081 pentatricopeptide (PP 65.4 13 0.00029 46.6 6.9 50 1084-1133 291-342 (697)
134 smart00101 14_3_3 14-3-3 homol 65.1 8.8 0.00019 43.7 4.8 81 1031-1118 123-210 (244)
135 PF08626 TRAPPC9-Trs120: Trans 64.9 32 0.00069 46.8 10.6 62 1076-1137 235-296 (1185)
136 PRK10153 DNA-binding transcrip 64.8 8.7 0.00019 47.6 5.1 86 1048-1174 397-482 (517)
137 KOG3617 WD40 and TPR repeat-co 64.5 56 0.0012 43.3 11.8 79 1050-1135 873-957 (1416)
138 cd09247 BRO1_Alix_like_2 Prote 64.5 1.3E+02 0.0029 35.7 14.3 46 1074-1119 111-156 (346)
139 PRK10049 pgaA outer membrane p 63.8 12 0.00026 48.0 6.2 66 1049-1135 63-128 (765)
140 PF12309 KBP_C: KIF-1 binding 63.0 11 0.00024 45.1 5.3 46 1311-1356 141-186 (371)
141 PRK10803 tol-pal system protei 62.9 16 0.00035 41.6 6.4 77 1096-1220 156-232 (263)
142 PRK14720 transcript cleavage f 62.0 24 0.00052 46.9 8.4 66 1085-1179 118-183 (906)
143 PF00244 14-3-3: 14-3-3 protei 61.3 7 0.00015 43.8 3.2 80 1032-1118 122-208 (236)
144 KOG2076 RNA polymerase III tra 61.2 52 0.0011 43.5 10.9 119 1048-1220 145-263 (895)
145 PF02259 FAT: FAT domain; Int 59.3 1.9E+02 0.0041 32.6 13.8 98 1196-1333 243-341 (352)
146 PLN03077 Protein ECB2; Provisi 59.3 76 0.0017 41.1 12.1 25 1314-1338 626-656 (857)
147 cd09249 BRO1_Rhophilin_2 Prote 59.2 4.3E+02 0.0093 32.7 23.0 226 1076-1346 99-358 (385)
148 PF13525 YfiO: Outer membrane 59.1 1.6E+02 0.0035 31.9 12.8 73 1049-1135 19-91 (203)
149 PRK15179 Vi polysaccharide bio 58.3 15 0.00033 47.3 5.7 47 1084-1136 155-201 (694)
150 PF10505 NARG2_C: NMDA recepto 58.3 63 0.0014 36.7 9.8 130 312-448 17-165 (220)
151 PF13428 TPR_14: Tetratricopep 58.1 7.7 0.00017 32.2 2.1 29 1084-1112 2-30 (44)
152 cd09241 BRO1_ScRim20-like Prot 57.9 3E+02 0.0065 32.9 15.7 47 1075-1121 98-153 (355)
153 cd09242 BRO1_ScBro1_like Prote 57.5 2.8E+02 0.0062 33.0 15.4 72 1048-1119 54-152 (348)
154 KOG3060 Uncharacterized conser 57.1 2.9E+02 0.0064 32.8 14.8 92 1155-1285 93-184 (289)
155 PRK10866 outer membrane biogen 56.6 94 0.002 35.0 10.8 69 1086-1179 35-103 (243)
156 PLN03077 Protein ECB2; Provisi 56.4 1.4E+02 0.003 38.8 13.7 117 1085-1226 526-646 (857)
157 COG5010 TadD Flp pilus assembl 55.7 16 0.00034 42.3 4.7 49 1081-1135 132-180 (257)
158 PF10602 RPN7: 26S proteasome 54.9 27 0.00059 37.6 6.2 58 1050-1118 51-108 (177)
159 KOG1550 Extracellular protein 54.6 74 0.0016 39.9 10.6 90 1047-1172 261-355 (552)
160 PF12688 TPR_5: Tetratrico pep 52.6 17 0.00037 37.2 4.0 49 1085-1136 3-51 (120)
161 PF09986 DUF2225: Uncharacteri 52.5 57 0.0012 36.4 8.3 87 1074-1177 70-157 (214)
162 PF04184 ST7: ST7 protein; In 51.6 68 0.0015 40.5 9.4 92 1096-1222 181-276 (539)
163 cd09239 BRO1_HD-PTP_like Prote 51.6 5.2E+02 0.011 31.3 16.5 48 1074-1121 105-161 (361)
164 COG2956 Predicted N-acetylgluc 51.3 1.6E+02 0.0035 35.8 11.9 100 1077-1222 174-273 (389)
165 PF12753 Nro1: Nuclear pore co 51.2 29 0.00063 42.3 6.2 91 1104-1220 271-372 (404)
166 KOG0543 FKBP-type peptidyl-pro 50.8 1.6E+02 0.0035 36.3 12.1 72 1047-1123 220-292 (397)
167 PF03097 BRO1: BRO1-like domai 50.5 2.8E+02 0.006 32.7 13.8 183 1196-1410 98-306 (377)
168 COG0497 RecN ATPase involved i 49.9 3.3E+02 0.0071 35.1 14.9 145 1049-1216 157-311 (557)
169 KOG4162 Predicted calmodulin-b 49.6 1.7E+02 0.0038 38.6 12.6 202 1050-1348 338-559 (799)
170 PLN02789 farnesyltranstransfer 49.4 5.2E+02 0.011 30.7 17.4 44 1085-1134 73-117 (320)
171 PF03097 BRO1: BRO1-like domai 48.7 2.2E+02 0.0048 33.5 12.7 47 1074-1120 105-153 (377)
172 PF13174 TPR_6: Tetratricopept 48.0 19 0.00042 27.0 2.8 29 1085-1113 2-30 (33)
173 COG0457 NrfG FOG: TPR repeat [ 48.0 74 0.0016 29.7 7.0 24 1093-1116 177-200 (291)
174 PF12895 Apc3: Anaphase-promot 47.9 22 0.00048 32.6 3.7 45 1057-1109 40-84 (84)
175 KOG3060 Uncharacterized conser 47.6 1.4E+02 0.0031 35.3 10.5 70 1084-1178 155-224 (289)
176 PF04781 DUF627: Protein of un 47.6 1.5E+02 0.0032 30.9 9.6 94 1049-1174 10-107 (111)
177 PF04053 Coatomer_WDAD: Coatom 47.6 33 0.00071 42.1 6.0 109 1043-1179 317-429 (443)
178 KOG0994 Extracellular matrix g 47.4 1E+03 0.022 33.6 23.5 72 1111-1185 1519-1596(1758)
179 KOG0551 Hsp90 co-chaperone CNS 47.2 98 0.0021 37.6 9.4 55 1082-1138 80-141 (390)
180 PF13181 TPR_8: Tetratricopept 46.8 24 0.00053 27.0 3.2 29 747-775 2-30 (34)
181 PF11817 Foie-gras_1: Foie gra 46.6 2.6E+02 0.0056 31.5 12.3 218 1086-1347 13-244 (247)
182 cd09241 BRO1_ScRim20-like Prot 46.4 2.9E+02 0.0062 33.0 13.2 136 1196-1361 97-245 (355)
183 PF11817 Foie-gras_1: Foie gra 45.3 42 0.00091 37.6 6.0 80 1049-1140 152-231 (247)
184 cd09240 BRO1_Alix Protein-inte 44.2 6.3E+02 0.014 30.2 15.9 45 1076-1120 112-165 (346)
185 smart00101 14_3_3 14-3-3 homol 44.0 5E+02 0.011 30.1 14.1 84 1254-1354 94-183 (244)
186 PF13428 TPR_14: Tetratricopep 42.7 27 0.00058 29.1 3.0 30 747-776 2-31 (44)
187 KOG3616 Selective LIM binding 41.9 9.3E+02 0.02 32.6 16.8 209 1049-1296 491-742 (1636)
188 cd07636 BAR_GRAF The Bin/Amphi 40.5 3.8E+02 0.0083 30.6 12.2 42 1097-1138 33-81 (207)
189 KOG1128 Uncharacterized conser 40.5 2.5E+02 0.0055 37.1 12.0 34 1097-1130 405-438 (777)
190 COG5040 BMH1 14-3-3 family pro 39.8 25 0.00054 39.6 3.1 77 1031-1115 125-209 (268)
191 COG3014 Uncharacterized protei 39.2 2.5E+02 0.0054 34.6 11.0 61 1052-1123 38-98 (449)
192 PF08631 SPO22: Meiosis protei 39.0 64 0.0014 36.6 6.2 87 1093-1208 3-94 (278)
193 PF13431 TPR_17: Tetratricopep 38.9 11 0.00023 30.6 0.1 33 1057-1103 1-33 (34)
194 KOG4648 Uncharacterized conser 38.8 55 0.0012 39.8 5.7 26 1088-1113 102-127 (536)
195 PF10373 EST1_DNA_bind: Est1 D 38.8 35 0.00076 37.3 4.0 43 1054-1110 1-43 (278)
196 cd07602 BAR_RhoGAP_OPHN1-like 38.2 3E+02 0.0065 31.3 11.0 60 1076-1138 15-81 (207)
197 TIGR00540 hemY_coli hemY prote 37.8 5.4E+02 0.012 30.8 13.8 48 1324-1373 351-402 (409)
198 PRK15179 Vi polysaccharide bio 37.4 4.6E+02 0.0099 34.5 13.9 102 1203-1353 152-266 (694)
199 KOG4162 Predicted calmodulin-b 37.4 1.1E+02 0.0024 40.2 8.5 51 1049-1113 664-714 (799)
200 PF10345 Cohesin_load: Cohesin 37.4 7.5E+02 0.016 31.5 15.6 51 1201-1278 55-106 (608)
201 PRK10747 putative protoheme IX 37.3 34 0.00073 40.6 3.9 83 1049-1174 308-390 (398)
202 cd09242 BRO1_ScBro1_like Prote 36.8 8.1E+02 0.018 29.4 15.6 137 1198-1361 100-252 (348)
203 cd09246 BRO1_Alix_like_1 Prote 35.9 5.5E+02 0.012 30.8 13.4 46 1074-1119 109-156 (353)
204 KOG1127 TPR repeat-containing 35.8 2.3E+02 0.0049 38.8 10.8 107 1069-1179 950-1072(1238)
205 cd09243 BRO1_Brox_like Protein 35.6 5.5E+02 0.012 31.2 13.3 23 1097-1119 135-157 (353)
206 KOG4648 Uncharacterized conser 35.0 1.2E+02 0.0025 37.2 7.6 183 1154-1416 110-299 (536)
207 KOG2376 Signal recognition par 34.9 4.7E+02 0.01 34.2 12.9 54 1204-1285 174-234 (652)
208 KOG4234 TPR repeat-containing 34.8 2.9E+02 0.0062 32.1 10.1 53 1051-1112 111-163 (271)
209 KOG3616 Selective LIM binding 34.8 4.8E+02 0.01 35.0 13.0 32 746-778 497-528 (1636)
210 KOG3785 Uncharacterized conser 34.6 1.8E+02 0.0039 35.9 9.0 78 1087-1178 95-177 (557)
211 TIGR00540 hemY_coli hemY prote 34.3 68 0.0015 38.1 5.8 87 1052-1179 316-404 (409)
212 PF10345 Cohesin_load: Cohesin 34.1 4.7E+02 0.01 33.3 13.1 56 1050-1115 36-92 (608)
213 KOG1550 Extracellular protein 33.7 2.8E+02 0.0062 34.9 11.1 68 1051-1135 228-300 (552)
214 KOG2471 TPR repeat-containing 32.1 65 0.0014 40.7 5.1 71 1084-1176 284-366 (696)
215 KOG2041 WD40 repeat protein [G 31.7 6.4E+02 0.014 33.8 13.4 76 1081-1163 794-874 (1189)
216 COG0790 FOG: TPR repeat, SEL1 31.4 1.4E+02 0.003 33.3 7.3 68 1047-1135 89-160 (292)
217 KOG2561 Adaptor protein NUB1, 31.3 1.4E+02 0.003 37.5 7.6 79 1044-1131 227-315 (568)
218 KOG0624 dsRNA-activated protei 31.3 3.5E+02 0.0075 33.5 10.6 44 1050-1093 204-247 (504)
219 cd09244 BRO1_Rhophilin Protein 30.9 6.4E+02 0.014 30.7 12.8 68 1074-1141 104-180 (350)
220 PLN03218 maturation of RBCL 1; 30.7 7.3E+02 0.016 34.3 14.7 111 1051-1179 523-641 (1060)
221 PF10516 SHNi-TPR: SHNi-TPR; 30.1 89 0.0019 26.7 4.2 20 1155-1178 15-34 (38)
222 PF13174 TPR_6: Tetratricopept 29.6 56 0.0012 24.5 2.7 26 747-772 1-26 (33)
223 cd09247 BRO1_Alix_like_2 Prote 29.6 7.6E+02 0.016 29.6 13.1 125 1198-1354 106-254 (346)
224 cd09034 BRO1_Alix_like Protein 29.3 9.8E+02 0.021 28.0 14.6 117 1122-1266 110-226 (345)
225 KOG0217 Mismatch repair ATPase 29.3 2.5E+02 0.0055 38.3 9.8 143 1037-1190 581-738 (1125)
226 KOG1174 Anaphase-promoting com 29.2 7.5E+02 0.016 31.5 13.0 51 1048-1112 313-363 (564)
227 KOG1451 Oligophrenin-1 and rel 29.1 1.1E+03 0.025 31.0 14.7 53 1051-1116 18-70 (812)
228 cd09246 BRO1_Alix_like_1 Prote 28.8 1E+03 0.022 28.7 13.9 136 1197-1362 103-256 (353)
229 KOG4340 Uncharacterized conser 28.6 1.8E+02 0.0038 35.3 7.5 142 1086-1282 47-192 (459)
230 PLN02789 farnesyltranstransfer 28.3 2.4E+02 0.0052 33.4 8.7 85 1050-1174 87-171 (320)
231 PRK10747 putative protoheme IX 28.3 7.7E+02 0.017 29.5 13.0 19 1093-1111 128-146 (398)
232 COG2956 Predicted N-acetylgluc 28.0 8.5E+02 0.018 30.2 12.9 86 1254-1347 159-254 (389)
233 KOG2796 Uncharacterized conser 28.0 3.8E+02 0.0082 32.3 9.9 90 1040-1133 165-262 (366)
234 KOG2479 Translation initiation 27.6 1.5E+02 0.0032 37.1 6.9 41 410-450 485-526 (549)
235 PF10516 SHNi-TPR: SHNi-TPR; 27.2 76 0.0017 27.1 3.3 34 1084-1117 2-35 (38)
236 cd09248 BRO1_Rhophilin_1 Prote 26.9 1.3E+03 0.028 28.7 21.2 68 1074-1141 97-180 (384)
237 cd07635 BAR_GRAF2 The Bin/Amph 26.5 8E+02 0.017 28.1 11.9 70 1055-1138 4-81 (207)
238 COG5010 TadD Flp pilus assembl 26.0 2.1E+02 0.0046 33.6 7.5 86 1083-1222 100-185 (257)
239 cd07604 BAR_ASAPs The Bin/Amph 25.9 1E+03 0.022 27.1 16.0 53 1080-1138 22-77 (215)
240 cd07603 BAR_ACAPs The Bin/Amph 25.9 9.8E+02 0.021 26.9 13.9 42 1097-1138 33-75 (200)
241 COG3071 HemY Uncharacterized e 25.6 66 0.0014 39.4 3.7 40 1084-1123 329-368 (400)
242 PF13431 TPR_17: Tetratricopep 25.3 35 0.00077 27.6 1.0 22 746-767 13-34 (34)
243 cd07598 BAR_FAM92 The Bin/Amph 24.2 1.1E+03 0.024 26.8 19.7 57 1074-1138 12-68 (211)
244 PRK14574 hmsH outer membrane p 23.2 2.2E+02 0.0047 38.0 7.8 53 1049-1115 116-168 (822)
245 PF12569 NARP1: NMDA receptor- 23.1 8.7E+02 0.019 31.0 12.6 79 1051-1135 162-240 (517)
246 cd02680 MIT_calpain7_2 MIT: do 22.5 99 0.0021 30.0 3.5 38 1044-1082 15-52 (75)
247 PF02561 FliS: Flagellar prote 22.5 5E+02 0.011 26.4 8.7 72 1092-1179 38-112 (122)
248 cd02680 MIT_calpain7_2 MIT: do 22.3 3.5E+02 0.0075 26.4 7.1 34 1155-1205 20-53 (75)
249 cd07637 BAR_ACAP3 The Bin/Amph 22.0 8.4E+02 0.018 27.5 11.0 39 1098-1136 34-73 (200)
250 PLN03218 maturation of RBCL 1; 22.0 8.1E+02 0.017 33.9 12.8 27 1084-1110 615-641 (1060)
251 PF04781 DUF627: Protein of un 21.7 3.9E+02 0.0084 28.0 7.7 71 1089-1173 2-72 (111)
252 PF10300 DUF3808: Protein of u 21.7 59 0.0013 40.0 2.3 68 1032-1111 265-333 (468)
253 PF07721 TPR_4: Tetratricopept 21.6 81 0.0018 24.0 2.3 23 748-770 3-25 (26)
254 PF13525 YfiO: Outer membrane 21.0 1.1E+03 0.024 25.7 11.7 135 1049-1214 56-194 (203)
255 PF14559 TPR_19: Tetratricopep 20.9 90 0.0019 27.1 2.7 26 747-772 26-51 (68)
256 PRK13184 pknD serine/threonine 20.7 3.1E+02 0.0068 37.3 8.5 106 1047-1187 487-593 (932)
257 KOG1156 N-terminal acetyltrans 20.1 2.2E+03 0.047 28.8 16.6 50 1097-1174 55-104 (700)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.74 E-value=3.3e-08 Score=118.10 Aligned_cols=190 Identities=22% Similarity=0.267 Sum_probs=129.3
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhh
Q 000487 1047 AENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILIN 1126 (1463)
Q Consensus 1047 ~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiy 1126 (1463)
+|-.|..|-.||.+|+.+= + ..+-||.+||.+.+.+|+...|+.+|++|+++ .+|++-.|
T Consensus 196 a~Grl~ea~~cYlkAi~~q------p--------~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl------dP~f~dAY 255 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQ------P--------CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL------DPNFLDAY 255 (966)
T ss_pred hhcccchhHHHHHHHHhhC------C--------ceeeeehhcchHHhhcchHHHHHHHHHHhhcC------CCcchHHH
Confidence 3455777899999999663 1 56778999999999999999999999999865 57899999
Q ss_pred hchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHH---------------HHhhhhhhhhhhhcc
Q 000487 1127 CNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYR---------------AAKLQLNSLVEEAGS 1191 (1463)
Q Consensus 1127 CNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~---------------~aK~~l~~~~~~~~~ 1191 (1463)
.|||.+|.. ...|..|+.+ |.+||..-. ..-.+| +|..-..-
T Consensus 256 iNLGnV~ke------------------~~~~d~Avs~----Y~rAl~lrpn~A~a~gNla~iYyeqG~ldl-AI~~Ykra 312 (966)
T KOG4626|consen 256 INLGNVYKE------------------ARIFDRAVSC----YLRALNLRPNHAVAHGNLACIYYEQGLLDL-AIDTYKRA 312 (966)
T ss_pred hhHHHHHHH------------------HhcchHHHHH----HHHHHhcCCcchhhccceEEEEeccccHHH-HHHHHHHH
Confidence 999999877 2466777777 777775311 111000 00000000
Q ss_pred ccccchhhHHHHHHHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHHHHhhhchhhh
Q 000487 1192 VSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRK 1271 (1463)
Q Consensus 1192 ~~~~LwdeV~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALkLyEslG~L~k 1271 (1463)
-++.-.|-.+|.|||..|.+.+.++ + |-+.|++||.||--.
T Consensus 313 ------l~~~P~F~~Ay~NlanALkd~G~V~-------------------------e---a~~cYnkaL~l~p~h----- 353 (966)
T KOG4626|consen 313 ------LELQPNFPDAYNNLANALKDKGSVT-------------------------E---AVDCYNKALRLCPNH----- 353 (966)
T ss_pred ------HhcCCCchHHHhHHHHHHHhccchH-------------------------H---HHHHHHHHHHhCCcc-----
Confidence 0123345667777777777766633 2 238999999998765
Q ss_pred hHHHHHHHHHhhhhhh---------HHHHhhhcccccCCCCCCchhHHHHHHHhhhHHHHH-----HHHHHhhhCCC
Q 000487 1272 QEAAYAYFQLACYQRD---------CFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERN-----WQKAMDFYGPR 1334 (1463)
Q Consensus 1272 qeAAyah~qLAs~yrd---------~cLr~Le~d~k~e~~~K~~~~~iq~ak~y~sLAe~n-----yqKAle~Y~p~ 1334 (1463)
|-+.++||.+|+- .|+++|++... -|.-+.+||-+| +++|+.+|..+
T Consensus 354 ---adam~NLgni~~E~~~~e~A~~ly~~al~v~p~-------------~aaa~nNLa~i~kqqgnl~~Ai~~Ykea 414 (966)
T KOG4626|consen 354 ---ADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-------------FAAAHNNLASIYKQQGNLDDAIMCYKEA 414 (966)
T ss_pred ---HHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-------------hhhhhhhHHHHHHhcccHHHHHHHHHHH
Confidence 7888899988887 66777777743 133455555555 77777777654
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.72 E-value=7.7e-08 Score=115.12 Aligned_cols=118 Identities=13% Similarity=0.125 Sum_probs=78.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHH
Q 000487 1089 MGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEY 1168 (1463)
Q Consensus 1089 LG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY 1168 (1463)
||.+|.+||.++-|+++|++||.. .+|.--.|||||....-.+++.... ..||||+.+ --.|
T Consensus 292 la~iYyeqG~ldlAI~~Ykral~~------~P~F~~Ay~NlanALkd~G~V~ea~-----------~cYnkaL~l-~p~h 353 (966)
T KOG4626|consen 292 LACIYYEQGLLDLAIDTYKRALEL------QPNFPDAYNNLANALKDKGSVTEAV-----------DCYNKALRL-CPNH 353 (966)
T ss_pred eEEEEeccccHHHHHHHHHHHHhc------CCCchHHHhHHHHHHHhccchHHHH-----------HHHHHHHHh-CCcc
Confidence 333466677777777777777743 4566777777777655544433222 567777765 3335
Q ss_pred HHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccchhhhhc
Q 000487 1169 CESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYE 1226 (1463)
Q Consensus 1169 ~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ls~~ye 1226 (1463)
-.|+.=++..++|-..+.+-..-- ..=-+|+..+|-+..|||.+|+.++.+.++++
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly--~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~ 409 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLY--LKALEVFPEFAAAHNNLASIYKQQGNLDDAIM 409 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHH--HHHHhhChhhhhhhhhHHHHHHhcccHHHHHH
Confidence 566666777777776665543321 11236899999999999999999999765543
No 3
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.62 E-value=6.6e-07 Score=107.22 Aligned_cols=163 Identities=15% Similarity=0.189 Sum_probs=128.4
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhc--cCcccchhhh
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEV--SDYTNIILIN 1126 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV--~D~tNiALiy 1126 (1463)
.++..|+..|++||.++. .-+-...-..|.++|.|+..|..+|.|.+|+.+++.|+++++++ ..+.-++-.+
T Consensus 255 ~k~~eAv~ly~~AL~i~e------~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 255 GKYDEAVNLYEEALTIRE------EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred ccHHHHHHHHHHHHHHHH------HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 367899999999999972 24445677889999999999999999999999999999999992 2222366666
Q ss_pred hchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHH
Q 000487 1127 CNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAH 1206 (1463)
Q Consensus 1127 CNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~ 1206 (1463)
+|+|-++.. ++.|.+|+.+ |+++|++|..+= -...-.++.
T Consensus 329 ~~~~~~~~~------------------~~~~Eea~~l----~q~al~i~~~~~------------------g~~~~~~a~ 368 (508)
T KOG1840|consen 329 SELAAILQS------------------MNEYEEAKKL----LQKALKIYLDAP------------------GEDNVNLAK 368 (508)
T ss_pred HHHHHHHHH------------------hcchhHHHHH----HHHHHHHHHhhc------------------cccchHHHH
Confidence 666666555 4788899999 999999998332 112457899
Q ss_pred HHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHHHHhhhchhhhhHHHHHHHHHhhhh
Q 000487 1207 TYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQ 1285 (1463)
Q Consensus 1207 TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALkLyEslG~L~kqeAAyah~qLAs~y 1285 (1463)
+|.|||.+|.-+.. |+ ++. +++++|+...+..+.---+..++...+||..|
T Consensus 369 ~~~nl~~l~~~~gk----~~---------------------ea~---~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~ 419 (508)
T KOG1840|consen 369 IYANLAELYLKMGK----YK---------------------EAE---ELYKKAIQILRELLGKKDYGVGKPLNQLAEAY 419 (508)
T ss_pred HHHHHHHHHHHhcc----hh---------------------HHH---HHHHHHHHHHHhcccCcChhhhHHHHHHHHHH
Confidence 99999999999999 66 333 88999999998886333466788899999665
No 4
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.51 E-value=1.8e-07 Score=83.13 Aligned_cols=75 Identities=19% Similarity=0.250 Sum_probs=67.0
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcc-cchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q 000487 1081 KKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYT-NIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQ 1159 (1463)
Q Consensus 1081 KiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~t-NiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnK 1159 (1463)
-++.+++.||.+|..+++|++|+.+|++|+++++..++.. .+|.++.|||.+++. .+.|.+
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~------------------~g~~~~ 64 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR------------------LGDYEE 64 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH------------------TTHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH------------------cCCHHH
Confidence 3678999999999999999999999999999998898654 589999999999999 578999
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 000487 1160 ALETAKLEYCESLRYYRA 1177 (1463)
Q Consensus 1160 ALe~ak~eY~kAL~~y~~ 1177 (1463)
|+++ |++|++++.+
T Consensus 65 A~~~----~~~al~i~~k 78 (78)
T PF13424_consen 65 ALEY----YQKALDIFEK 78 (78)
T ss_dssp HHHH----HHHHHHHHHH
T ss_pred HHHH----HHHHHhhhcC
Confidence 9999 9999999864
No 5
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.45 E-value=1.7e-06 Score=95.24 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhc
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCN 1128 (1463)
.++..|.+||.+|..+. ........-|+++.+.+.+|-.. ++..|+.+|.+|+.+|.+.++....|.++.+
T Consensus 49 ~~~~~A~~ay~kAa~~~--------~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~ 119 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCY--------EKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKE 119 (282)
T ss_dssp T-CHHHHHHHHHHHHHH--------HHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 35566777777776665 44555667788888888887654 9999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhhH-HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHH
Q 000487 1129 LGHGRRALAEEMVSKVESLKIHTIFQ-NMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHT 1207 (1463)
Q Consensus 1129 LG~~yR~LAee~~sk~~~~k~~~~~q-~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~T 1207 (1463)
+|.+|.. + +.|.+|+++ |++|+.+|+... .....+.+
T Consensus 120 lA~~ye~------------------~~~d~e~Ai~~----Y~~A~~~y~~e~--------------------~~~~a~~~ 157 (282)
T PF14938_consen 120 LAEIYEE------------------QLGDYEKAIEY----YQKAAELYEQEG--------------------SPHSAAEC 157 (282)
T ss_dssp HHHHHCC------------------TT--HHHHHHH----HHHHHHHHHHTT---------------------HHHHHHH
T ss_pred HHHHHHH------------------HcCCHHHHHHH----HHHHHHHHHHCC--------------------ChhhHHHH
Confidence 9999877 3 589999999 999999999887 36677788
Q ss_pred HHHHHHhhhhccc
Q 000487 1208 YLRLGMLLAREDT 1220 (1463)
Q Consensus 1208 YlnLG~LLqde~~ 1220 (1463)
+.++|.++.+...
T Consensus 158 ~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 158 LLKAADLYARLGR 170 (282)
T ss_dssp HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhCC
Confidence 8888888887777
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.40 E-value=5.1e-06 Score=99.83 Aligned_cols=180 Identities=17% Similarity=0.161 Sum_probs=137.7
Q ss_pred cccceeeeccCCCCCChhhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHH
Q 000487 1031 KNGGIFKYLEDPVVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAI 1110 (1463)
Q Consensus 1031 ~~GgiFkyL~~~~~~D~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI 1110 (1463)
..|..+.+|. ..=-....|.+|+..++.|++++-+ -+--...-++-.+|.+|.+|+.++.+.+|...|++|+
T Consensus 197 ~~~~~~~~La--~~y~~~g~~e~A~~l~k~Al~~l~k------~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL 268 (508)
T KOG1840|consen 197 ERLRTLRNLA--EMYAVQGRLEKAEPLCKQALRILEK------TSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL 268 (508)
T ss_pred hHHHHHHHHH--HHHHHhccHHHHHHHHHHHHHHHHH------ccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3456666652 2222346788999999999998621 1112334455556689999999999999999999999
Q ss_pred HHHHhccCccc--chhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhh
Q 000487 1111 NAFKEVSDYTN--IILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEE 1188 (1463)
Q Consensus 1111 ~aF~eV~D~tN--iALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~ 1188 (1463)
.+++++.-.+| +|..+.||+.+|-. ++.|..|-.+ |.+|++|+...-
T Consensus 269 ~i~e~~~G~~h~~va~~l~nLa~ly~~------------------~GKf~EA~~~----~e~Al~I~~~~~--------- 317 (508)
T KOG1840|consen 269 TIREEVFGEDHPAVAATLNNLAVLYYK------------------QGKFAEAEEY----CERALEIYEKLL--------- 317 (508)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhc------------------cCChHHHHHH----HHHHHHHHHHhh---------
Confidence 99999977666 99999999999855 4789999999 999999999822
Q ss_pred hccccccchhhHHHHHHHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHHHHhhh-c
Q 000487 1189 AGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESM-G 1267 (1463)
Q Consensus 1189 ~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALkLyEsl-G 1267 (1463)
. .-.-+++..+.++|.+++-+.. ++ +++ .++++||+++..- |
T Consensus 318 -~--------~~~~~v~~~l~~~~~~~~~~~~----~E---------------------ea~---~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 318 -G--------ASHPEVAAQLSELAAILQSMNE----YE---------------------EAK---KLLQKALKIYLDAPG 360 (508)
T ss_pred -c--------cChHHHHHHHHHHHHHHHHhcc----hh---------------------HHH---HHHHHHHHHHHhhcc
Confidence 0 1256778888999999999988 66 445 8999999999943 4
Q ss_pred hhhhhHHHHHHHHHhhhhhh
Q 000487 1268 DLRKQEAAYAYFQLACYQRD 1287 (1463)
Q Consensus 1268 ~L~kqeAAyah~qLAs~yrd 1287 (1463)
+ .-.-.|-++.|||..|+.
T Consensus 361 ~-~~~~~a~~~~nl~~l~~~ 379 (508)
T KOG1840|consen 361 E-DNVNLAKIYANLAELYLK 379 (508)
T ss_pred c-cchHHHHHHHHHHHHHHH
Confidence 1 223578899999988877
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.12 E-value=3e-05 Score=93.51 Aligned_cols=71 Identities=10% Similarity=0.059 Sum_probs=54.4
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhh
Q 000487 1048 ENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINC 1127 (1463)
Q Consensus 1048 E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyC 1127 (1463)
...+..|+++|++|++.- ......+++++.+|.+++.++++++|+.+|+++|... ++....++
T Consensus 307 ~~~y~~A~~~~~~al~~~-----------~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~------P~~~~~~~ 369 (615)
T TIGR00990 307 DESYEEAARAFEKALDLG-----------KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD------PRVTQSYI 369 (615)
T ss_pred hhhHHHHHHHHHHHHhcC-----------CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCcHHHHH
Confidence 356778888888888542 1234566889999999999999999999999999763 35566777
Q ss_pred chhhHHHH
Q 000487 1128 NLGHGRRA 1135 (1463)
Q Consensus 1128 NLG~~yR~ 1135 (1463)
++|.++..
T Consensus 370 ~la~~~~~ 377 (615)
T TIGR00990 370 KRASMNLE 377 (615)
T ss_pred HHHHHHHH
Confidence 77777655
No 8
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.09 E-value=4.1e-05 Score=84.59 Aligned_cols=121 Identities=21% Similarity=0.267 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHH
Q 000487 1093 RLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESL 1172 (1463)
Q Consensus 1093 ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL 1172 (1463)
|-..++|.+|..+|.+|...+++.+|....+..|-+.|.+|+. ..+.+|+++ |.+|+
T Consensus 45 fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-------------------~~~~~Ai~~----~~~A~ 101 (282)
T PF14938_consen 45 FKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-------------------GDPDEAIEC----YEKAI 101 (282)
T ss_dssp HHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-------------------TTHHHHHHH----HHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-------------------hCHHHHHHH----HHHHH
Confidence 3345899999999999999999999999999999999999887 367799999 99999
Q ss_pred HHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhc-cchhhhhcccccccCCCCcccchhhhhhhcccc
Q 000487 1173 RYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLARE-DTTAEVYETGAWEDISVPCEGRTRKELRKHEVS 1251 (1463)
Q Consensus 1173 ~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde-~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIs 1251 (1463)
++|.... . ..+-|.++.+||.+|... .. ++ .+|
T Consensus 102 ~~y~~~G------------~--------~~~aA~~~~~lA~~ye~~~~d----~e---------------------~Ai- 135 (282)
T PF14938_consen 102 EIYREAG------------R--------FSQAAKCLKELAEIYEEQLGD----YE---------------------KAI- 135 (282)
T ss_dssp HHHHHCT---------------------HHHHHHHHHHHHHHHCCTT------HH---------------------HHH-
T ss_pred HHHHhcC------------c--------HHHHHHHHHHHHHHHHHHcCC----HH---------------------HHH-
Confidence 9999887 3 677899999999999887 55 44 556
Q ss_pred HHHHHHHHHHHHhhhchhhhhHHHHHHHHHhhhhh
Q 000487 1252 ANDAIREALSLYESMGDLRKQEAAYAYFQLACYQR 1286 (1463)
Q Consensus 1252 a~Dai~eALkLyEslG~L~kqeAAyah~qLAs~yr 1286 (1463)
++|++|+.+|+..| ....++-++.++|.+|-
T Consensus 136 --~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 136 --EYYQKAAELYEQEG--SPHSAAECLLKAADLYA 166 (282)
T ss_dssp --HHHHHHHHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHH
Confidence 99999999999999 66666777777774443
No 9
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.03 E-value=4.2e-05 Score=89.51 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchh
Q 000487 1051 LSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLG 1130 (1463)
Q Consensus 1051 L~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG 1130 (1463)
..+.+..|++|+++= + ..++-+.-+|.-||..|++-++|.||+++..--|.+-+.++|.-+=|-.--|||
T Consensus 33 craGv~ff~aA~qvG-T---------eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 33 CRAGVDFFKAALQVG-T---------EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred hhhhHHHHHHHHHhc-c---------hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 345667788888773 1 567778888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHH
Q 000487 1131 HGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLR 1210 (1463)
Q Consensus 1131 ~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYln 1210 (1463)
.+... .++|+.|+-| .++-|.+-++.. | .-.-+.+|||
T Consensus 103 NtlKv------------------~G~fdeA~~c----c~rhLd~areLg----------D----------rv~e~RAlYN 140 (639)
T KOG1130|consen 103 NTLKV------------------KGAFDEALTC----CFRHLDFARELG----------D----------RVLESRALYN 140 (639)
T ss_pred chhhh------------------hcccchHHHH----HHHHhHHHHHHh----------H----------HHhhhHHHhh
Confidence 98766 4899999999 999998877766 1 2234689999
Q ss_pred HHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHHHHhhhc
Q 000487 1211 LGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMG 1267 (1463)
Q Consensus 1211 LG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALkLyEslG 1267 (1463)
||++|.....-..- + +.-++ ..--++++..---|-++|++-|++.+.+|
T Consensus 141 lgnvYhakGk~~g~-~-~pee~------g~f~~ev~~al~~Av~fy~eNL~l~~~lg 189 (639)
T KOG1130|consen 141 LGNVYHAKGKCTGL-E-APEEK------GAFNAEVTSALENAVKFYMENLELSEKLG 189 (639)
T ss_pred hhhhhhhcccccCC-C-Chhhc------ccccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999988762200 0 00000 00011111111134589999999999886
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.83 E-value=0.00022 Score=86.14 Aligned_cols=83 Identities=17% Similarity=0.141 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhch
Q 000487 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNL 1129 (1463)
Q Consensus 1050 NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNL 1129 (1463)
++..|+.+|++|+++- | +..+++..+|.+++..+++.+|+.+|+++|... .+...++.++
T Consensus 346 ~~~eA~~~~~kal~l~---P-----------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~l 405 (615)
T TIGR00990 346 KHLEALADLSKSIELD---P-----------RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN------SEDPDIYYHR 405 (615)
T ss_pred CHHHHHHHHHHHHHcC---C-----------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHH
Confidence 4668999999999764 2 345678888888888999999999999998762 3456788888
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 000487 1130 GHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRY 1174 (1463)
Q Consensus 1130 G~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~ 1174 (1463)
|.++.. .+.|.+|+++ |.++|++
T Consensus 406 g~~~~~------------------~g~~~~A~~~----~~kal~l 428 (615)
T TIGR00990 406 AQLHFI------------------KGEFAQAGKD----YQKSIDL 428 (615)
T ss_pred HHHHHH------------------cCCHHHHHHH----HHHHHHc
Confidence 888776 3566777777 7777653
No 11
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.80 E-value=5.9e-05 Score=67.11 Aligned_cols=78 Identities=24% Similarity=0.298 Sum_probs=63.0
Q ss_pred cccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchh
Q 000487 1119 YTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRM 1198 (1463)
Q Consensus 1119 ~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~Lwd 1198 (1463)
|.+++-++.|||.+|+. ++.|.+|+++ |.+||++.....
T Consensus 1 H~~~a~~~~~la~~~~~------------------~~~~~~A~~~----~~~al~~~~~~~------------------- 39 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE------------------LGRYDEALDY----YEKALDIEEQLG------------------- 39 (78)
T ss_dssp -HHHHHHHHHHHHHHHH------------------TT-HHHHHHH----HHHHHHHHHHTT-------------------
T ss_pred CHHHHHHHHHHHHHHHH------------------cCCHHHHHHH----HHHHHHHHHHHC-------------------
Confidence 45678899999999988 5799999999 999999944443
Q ss_pred hHHHHHHHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHHHHhh
Q 000487 1199 EVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYES 1265 (1463)
Q Consensus 1199 eV~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALkLyEs 1265 (1463)
.-..+++.+|++||.++..... ++ +++ +++++|++++++
T Consensus 40 ~~~~~~a~~~~~lg~~~~~~g~----~~---------------------~A~---~~~~~al~i~~k 78 (78)
T PF13424_consen 40 DDHPDTANTLNNLGECYYRLGD----YE---------------------EAL---EYYQKALDIFEK 78 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHTTH----HH---------------------HHH---HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCC----HH---------------------HHH---HHHHHHHhhhcC
Confidence 1256789999999999999998 55 334 999999999874
No 12
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.72 E-value=0.00025 Score=83.32 Aligned_cols=165 Identities=14% Similarity=0.132 Sum_probs=124.1
Q ss_pred CCChhhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccch
Q 000487 1044 VGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNII 1123 (1463)
Q Consensus 1044 ~~D~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiA 1123 (1463)
..++-..|..|.+.|.+-|+.. +.....--.|-+|-.||..|+--|+|..|+.+.+.-+.+-++.+|.+-.-
T Consensus 164 ~~ev~~al~~Av~fy~eNL~l~--------~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeR 235 (639)
T KOG1130|consen 164 NAEVTSALENAVKFYMENLELS--------EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAER 235 (639)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH--------HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4556788999999999999987 77778888999999999999999999999999999999999999999999
Q ss_pred hhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHH
Q 000487 1124 LINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQ 1203 (1463)
Q Consensus 1124 LiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~q 1203 (1463)
..|.|||..|-+ .+.+.-|+|+ |+++|..--+.+ . .+|..
T Consensus 236 RA~sNlgN~hif------------------lg~fe~A~eh----YK~tl~LAielg------------~-----r~vEA- 275 (639)
T KOG1130|consen 236 RAHSNLGNCHIF------------------LGNFELAIEH----YKLTLNLAIELG------------N-----RTVEA- 275 (639)
T ss_pred Hhhcccchhhhh------------------hcccHhHHHH----HHHHHHHHHHhc------------c-----hhHHH-
Confidence 999999999877 3567788888 887777655555 1 01222
Q ss_pred HHHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHHHHhhhchhhhhHHHHHHHHHhh
Q 000487 1204 FAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLAC 1283 (1463)
Q Consensus 1204 lA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALkLyEslG~L~kqeAAyah~qLAs 1283 (1463)
..-|.||..|.--.. |+ ++| +|..+-|++.++++ +--.-+.+++-||.
T Consensus 276 --QscYSLgNtytll~e----~~---------------------kAI---~Yh~rHLaIAqeL~--DriGe~RacwSLgn 323 (639)
T KOG1130|consen 276 --QSCYSLGNTYTLLKE----VQ---------------------KAI---TYHQRHLAIAQELE--DRIGELRACWSLGN 323 (639)
T ss_pred --HHHHHhhhHHHHHHH----HH---------------------HHH---HHHHHHHHHHHHHH--HhhhhHHHHHHHHH
Confidence 223344443321111 33 347 99999999999996 33333566666665
Q ss_pred hhhhH
Q 000487 1284 YQRDC 1288 (1463)
Q Consensus 1284 ~yrd~ 1288 (1463)
.|-..
T Consensus 324 a~~al 328 (639)
T KOG1130|consen 324 AFNAL 328 (639)
T ss_pred HHHhh
Confidence 55443
No 13
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00014 Score=87.60 Aligned_cols=89 Identities=24% Similarity=0.281 Sum_probs=71.6
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCccc-chhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHH
Q 000487 1084 WVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTN-IILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALE 1162 (1463)
Q Consensus 1084 nv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tN-iALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe 1162 (1463)
-|.||||++.++.+.|.+|..+|.+++..-+++....- -+=++.||||+||. .+.|..|+.
T Consensus 415 lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk------------------l~~~~eAI~ 476 (611)
T KOG1173|consen 415 LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK------------------LNKYEEAID 476 (611)
T ss_pred hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH------------------HhhHHHHHH
Confidence 37899999999999999999999999955555544433 45679999999999 578999999
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccc
Q 000487 1163 TAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDT 1220 (1463)
Q Consensus 1163 ~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ 1220 (1463)
+ |++||.. .++.+.||-.+|-+|+-...
T Consensus 477 ~----~q~aL~l--------------------------~~k~~~~~asig~iy~llgn 504 (611)
T KOG1173|consen 477 Y----YQKALLL--------------------------SPKDASTHASIGYIYHLLGN 504 (611)
T ss_pred H----HHHHHHc--------------------------CCCchhHHHHHHHHHHHhcC
Confidence 9 9999863 44556777788887776666
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.62 E-value=0.0011 Score=74.06 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhhhhccc
Q 000487 1203 QFAHTYLRLGMLLAREDT 1220 (1463)
Q Consensus 1203 qlA~TYlnLG~LLqde~~ 1220 (1463)
.++..|+++|.++.....
T Consensus 178 ~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 178 EIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 456677888888777666
No 15
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.44 E-value=0.0023 Score=63.45 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhc
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCN 1128 (1463)
.++..|+++|+++++.. |. ...+++.+|.+++.++++++|+.+|.+++.... +...++.|
T Consensus 45 ~~~~~A~~~~~~~l~~~---p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~ 104 (234)
T TIGR02521 45 GDLEVAKENLDKALEHD---PD-----------DYLAYLALALYYQQLGELEKAEDSFRRALTLNP------NNGDVLNN 104 (234)
T ss_pred CCHHHHHHHHHHHHHhC---cc-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHH
Confidence 46788999999998653 11 236778899999999999999999999997632 23456777
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 000487 1129 LGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLR 1173 (1463)
Q Consensus 1129 LG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~ 1173 (1463)
+|..+.. ++.|.+|+++ |.++++
T Consensus 105 ~~~~~~~------------------~g~~~~A~~~----~~~~~~ 127 (234)
T TIGR02521 105 YGTFLCQ------------------QGKYEQAMQQ----FEQAIE 127 (234)
T ss_pred HHHHHHH------------------cccHHHHHHH----HHHHHh
Confidence 8877765 4688888888 888875
No 16
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.38 E-value=0.00069 Score=68.82 Aligned_cols=99 Identities=15% Similarity=0.151 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhc
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCN 1128 (1463)
.++..|+.+|++|+.+. +. + ...+++++.||.++...+.+.+|+.+|++++... ...+..+.|
T Consensus 49 g~~~~A~~~~~~al~l~---~~-~-------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~------~~~~~~~~~ 111 (168)
T CHL00033 49 GEYAEALQNYYEAMRLE---ID-P-------YDRSYILYNIGLIHTSNGEHTKALEYYFQALERN------PFLPQALNN 111 (168)
T ss_pred CCHHHHHHHHHHHHhcc---cc-c-------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCcHHHHHH
Confidence 45779999999999774 11 1 1245689999999999999999999999999762 334566788
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 000487 1129 LGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAK 1179 (1463)
Q Consensus 1129 LG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK 1179 (1463)
+|.++..+++..... +.|..|+.. |.+|+.+|..+-
T Consensus 112 la~i~~~~~~~~~~~-----------g~~~~A~~~----~~~a~~~~~~a~ 147 (168)
T CHL00033 112 MAVICHYRGEQAIEQ-----------GDSEIAEAW----FDQAAEYWKQAI 147 (168)
T ss_pred HHHHHHHhhHHHHHc-----------ccHHHHHHH----HHHHHHHHHHHH
Confidence 888888888765444 677788888 888888888775
No 17
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.35 E-value=0.0023 Score=71.48 Aligned_cols=66 Identities=14% Similarity=0.050 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhch
Q 000487 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNL 1129 (1463)
Q Consensus 1050 NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNL 1129 (1463)
++..|+.+|++|++.- | +...+++.+|.++...+++.+|+.+|.+++... ++.+-.++|+
T Consensus 79 ~~~~A~~~~~~Al~l~---P-----------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~------P~~~~a~~~l 138 (296)
T PRK11189 79 LRALARNDFSQALALR---P-----------DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD------PTYNYAYLNR 138 (296)
T ss_pred CHHHHHHHHHHHHHcC---C-----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHH
Confidence 4668899999999764 2 225789999999999999999999999999763 3456677888
Q ss_pred hhHHHH
Q 000487 1130 GHGRRA 1135 (1463)
Q Consensus 1130 G~~yR~ 1135 (1463)
|.++..
T Consensus 139 g~~l~~ 144 (296)
T PRK11189 139 GIALYY 144 (296)
T ss_pred HHHHHH
Confidence 888765
No 18
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.33 E-value=0.00044 Score=84.57 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=26.9
Q ss_pred HHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHH
Q 000487 1077 SVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAI 1110 (1463)
Q Consensus 1077 svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI 1110 (1463)
+-....|||.-.||+.||+..+|.+|+.+|+..-
T Consensus 347 ~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r 380 (638)
T KOG1126|consen 347 SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVR 380 (638)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678999999999999888888888887643
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.33 E-value=0.0023 Score=71.41 Aligned_cols=88 Identities=15% Similarity=0.152 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhc
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCN 1128 (1463)
.++..|+..|+++++.- | .-..+++.||.++..++++.+|..+|++++..- ..+....+..+.+
T Consensus 49 ~~~~~A~~~~~~al~~~---p-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~ 112 (389)
T PRK11788 49 EQPDKAIDLFIEMLKVD---P-----------ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP--DLTREQRLLALQE 112 (389)
T ss_pred CChHHHHHHHHHHHhcC---c-----------ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC--CCCHHHHHHHHHH
Confidence 45567999999999763 1 123578889999999999999999999887521 0111122345566
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 000487 1129 LGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRY 1174 (1463)
Q Consensus 1129 LG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~ 1174 (1463)
||..|.. ++.|.+|++. |.++++.
T Consensus 113 La~~~~~------------------~g~~~~A~~~----~~~~l~~ 136 (389)
T PRK11788 113 LGQDYLK------------------AGLLDRAEEL----FLQLVDE 136 (389)
T ss_pred HHHHHHH------------------CCCHHHHHHH----HHHHHcC
Confidence 6666554 3678888888 7777653
No 20
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.29 E-value=0.0011 Score=67.47 Aligned_cols=100 Identities=15% Similarity=0.081 Sum_probs=74.9
Q ss_pred HHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHH
Q 000487 1077 SVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNM 1156 (1463)
Q Consensus 1077 svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~ 1156 (1463)
....+.+..++.+|..+..++++.+|+.+|.+++... .|+...+.+++|||.++.. .+.
T Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~---~~~~~~~~~~~~lg~~~~~------------------~g~ 87 (168)
T CHL00033 29 TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE---IDPYDRSYILYNIGLIHTS------------------NGE 87 (168)
T ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---ccchhhHHHHHHHHHHHHH------------------cCC
Confidence 4455678889999999999999999999999999885 3455567799999999888 478
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccc
Q 000487 1157 YKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDT 1220 (1463)
Q Consensus 1157 YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ 1220 (1463)
|.+|+++ |.+||++.... -+....++.+|.++|.++.....
T Consensus 88 ~~eA~~~----~~~Al~~~~~~-------------------~~~~~~la~i~~~~~~~~~~~g~ 128 (168)
T CHL00033 88 HTKALEY----YFQALERNPFL-------------------PQALNNMAVICHYRGEQAIEQGD 128 (168)
T ss_pred HHHHHHH----HHHHHHhCcCc-------------------HHHHHHHHHHHHHhhHHHHHccc
Confidence 8899999 99999762111 12344566677777766544444
No 21
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.28 E-value=0.00063 Score=59.15 Aligned_cols=64 Identities=23% Similarity=0.319 Sum_probs=54.9
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHH-HHHHHH
Q 000487 1083 GWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQN-MYKQAL 1161 (1463)
Q Consensus 1083 Gnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~-~YnKAL 1161 (1463)
+.+++.+|.+++.++++.+|+.+|.+||.. |+ +-+.+++|+|.+|.. ++ .|.+|+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p-~~~~~~~~~g~~~~~------------------~~~~~~~A~ 58 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-----DP-NNAEAYYNLGLAYMK------------------LGKDYEEAI 58 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-----ST-THHHHHHHHHHHHHH------------------TTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCHHHHHHHHHHHHH------------------hCccHHHHH
Confidence 457899999999999999999999999987 33 447799999999888 35 788999
Q ss_pred HHhHHHHHHHHHH
Q 000487 1162 ETAKLEYCESLRY 1174 (1463)
Q Consensus 1162 e~ak~eY~kAL~~ 1174 (1463)
++ |.+||++
T Consensus 59 ~~----~~~al~l 67 (69)
T PF13414_consen 59 ED----FEKALKL 67 (69)
T ss_dssp HH----HHHHHHH
T ss_pred HH----HHHHHHc
Confidence 99 8888875
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.26 E-value=0.0032 Score=62.50 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=55.3
Q ss_pred HHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHH
Q 000487 1076 QSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQN 1155 (1463)
Q Consensus 1076 ~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~ 1155 (1463)
.......+.++..+|..++.++++.+|+..|++++... ++.+..+.++|.++.. ++
T Consensus 24 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~------------------~~ 79 (234)
T TIGR02521 24 TTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD------PDDYLAYLALALYYQQ------------------LG 79 (234)
T ss_pred cccCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHH------------------cC
Confidence 34445667889999999999999999999999998652 3445677778877766 36
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 000487 1156 MYKQALETAKLEYCESLRY 1174 (1463)
Q Consensus 1156 ~YnKALe~ak~eY~kAL~~ 1174 (1463)
.|.+|+++ |.++++.
T Consensus 80 ~~~~A~~~----~~~al~~ 94 (234)
T TIGR02521 80 ELEKAEDS----FRRALTL 94 (234)
T ss_pred CHHHHHHH----HHHHHhh
Confidence 77888888 8888765
No 23
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.24 E-value=0.0038 Score=69.70 Aligned_cols=88 Identities=11% Similarity=0.071 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhc
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCN 1128 (1463)
.....+|..+.+++... +..+ ...+.+++++|.+|...|++.+|+..|.++|.. .++.+..++|
T Consensus 40 ~~~e~~i~~~~~~l~~~---~~~~-------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l------~P~~~~a~~~ 103 (296)
T PRK11189 40 LQQEVILARLNQILASR---DLTD-------EERAQLHYERGVLYDSLGLRALARNDFSQALAL------RPDMADAYNY 103 (296)
T ss_pred hHHHHHHHHHHHHHccc---cCCc-------HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------CCCCHHHHHH
Confidence 67788999999988543 1111 233456899999999999999999999999985 3466889999
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 000487 1129 LGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRY 1174 (1463)
Q Consensus 1129 LG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~ 1174 (1463)
+|.+++. .+.|.+|++. |.+||++
T Consensus 104 lg~~~~~------------------~g~~~~A~~~----~~~Al~l 127 (296)
T PRK11189 104 LGIYLTQ------------------AGNFDAAYEA----FDSVLEL 127 (296)
T ss_pred HHHHHHH------------------CCCHHHHHHH----HHHHHHh
Confidence 9999888 4678888888 8888764
No 24
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.12 E-value=0.0011 Score=81.25 Aligned_cols=82 Identities=18% Similarity=0.331 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhc
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCN 1128 (1463)
.-+.+|..||+.||+.. -|.=|||+.||.+|+.|+-+..|+.+|.+|+.+. +.|. .|.|-
T Consensus 469 ee~d~a~~~fr~Al~~~--------------~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-----P~ns-vi~~~ 528 (638)
T KOG1126|consen 469 EEFDKAMKSFRKALGVD--------------PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-----PSNS-VILCH 528 (638)
T ss_pred HHHHhHHHHHHhhhcCC--------------chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-----ccch-hHHhh
Confidence 34788999999999775 3667899999999999999999999999999653 4453 34455
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHH
Q 000487 1129 LGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESL 1172 (1463)
Q Consensus 1129 LG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL 1172 (1463)
+|..+.. .+.+.|||++ |.+|+
T Consensus 529 ~g~~~~~------------------~k~~d~AL~~----~~~A~ 550 (638)
T KOG1126|consen 529 IGRIQHQ------------------LKRKDKALQL----YEKAI 550 (638)
T ss_pred hhHHHHH------------------hhhhhHHHHH----HHHHH
Confidence 6666555 2456677777 66654
No 25
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.11 E-value=0.0048 Score=80.51 Aligned_cols=66 Identities=23% Similarity=0.272 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhc
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCN 1128 (1463)
.++..|+++|++|++.- |. -.+++..||.+++.++++.+|+.+|+++++.+- .| +..+-+
T Consensus 365 g~~~eA~~~~~~Al~~~---P~-----------~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-----~~-~~a~~~ 424 (1157)
T PRK11447 365 NNLAQAERLYQQARQVD---NT-----------DSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-----GN-TNAVRG 424 (1157)
T ss_pred CCHHHHHHHHHHHHHhC---CC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC-HHHHHH
Confidence 46889999999999774 21 236788999999999999999999999998742 22 344566
Q ss_pred hhhHHH
Q 000487 1129 LGHGRR 1134 (1463)
Q Consensus 1129 LG~~yR 1134 (1463)
||.+|+
T Consensus 425 L~~l~~ 430 (1157)
T PRK11447 425 LANLYR 430 (1157)
T ss_pred HHHHHH
Confidence 777764
No 26
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.065 Score=60.48 Aligned_cols=113 Identities=19% Similarity=0.300 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCccc-------c
Q 000487 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTN-------I 1122 (1463)
Q Consensus 1050 NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tN-------i 1122 (1463)
.+..|.++|.+|-..+ ......-.-|+++-+..-+++.-++=..|-..|.+|-+.|+++ |+.+ -
T Consensus 29 k~eeAadl~~~Aan~y--------klaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~a 99 (288)
T KOG1586|consen 29 KYEEAAELYERAANMY--------KLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKA 99 (288)
T ss_pred chHHHHHHHHHHHHHH--------HHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHH
Confidence 7888999999999887 6666677778888888888888777777888899999999988 5544 4
Q ss_pred hhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 000487 1123 ILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAK 1179 (1463)
Q Consensus 1123 ALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK 1179 (1463)
|-|||-+|+.+|+ |.-..+-.+.++.. -..|.||+.+ |++|=.||....
T Consensus 100 ieIyt~~Grf~~a-Ak~~~~iaEiyEsd---l~d~ekaI~~----YE~Aae~yk~ee 148 (288)
T KOG1586|consen 100 IEIYTDMGRFTMA-AKHHIEIAEIYESD---LQDFEKAIAH----YEQAAEYYKGEE 148 (288)
T ss_pred HHHHHhhhHHHHH-HhhhhhHHHHHhhh---HHHHHHHHHH----HHHHHHHHcchh
Confidence 6688999999885 22222222333222 2578899999 999999998766
No 27
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.99 E-value=0.0021 Score=65.90 Aligned_cols=102 Identities=19% Similarity=0.202 Sum_probs=75.4
Q ss_pred ChhhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhh
Q 000487 1046 DAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILI 1125 (1463)
Q Consensus 1046 D~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALi 1125 (1463)
-...++..|+.||++|+++. +.. ...++++..||.++...+++.+|+.+|.+++... ++.+..
T Consensus 46 ~~~g~~~~A~~~~~~al~~~---~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~ 108 (172)
T PRK02603 46 QADGEYAEALENYEEALKLE---EDP--------NDRSYILYNMGIIYASNGEHDKALEYYHQALELN------PKQPSA 108 (172)
T ss_pred HHcCCHHHHHHHHHHHHHHh---hcc--------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cccHHH
Confidence 34567789999999999764 111 1246789999999999999999999999999864 334566
Q ss_pred hhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 000487 1126 NCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAK 1179 (1463)
Q Consensus 1126 yCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK 1179 (1463)
+.++|.+|..+++....+ +.+.+|++. |.+|++++..+.
T Consensus 109 ~~~lg~~~~~~g~~~~a~-----------~~~~~A~~~----~~~A~~~~~~a~ 147 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEA-----------GDQDEAEAL----FDKAAEYWKQAI 147 (172)
T ss_pred HHHHHHHHHHcCChHhHh-----------hCHHHHHHH----HHHHHHHHHHHH
Confidence 677888877755533333 456677777 888888887765
No 28
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.85 E-value=0.004 Score=63.87 Aligned_cols=72 Identities=19% Similarity=0.186 Sum_probs=59.3
Q ss_pred HHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 000487 1078 VLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMY 1157 (1463)
Q Consensus 1078 vlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~Y 1157 (1463)
...+.+++++.+|..++..+++.+|+.+|++++++.. |..+.+.++.|+|.+++. .+.|
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~la~~~~~------------------~g~~ 88 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYAS------------------NGEH 88 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHH------------------cCCH
Confidence 3567788999999999999999999999999998754 333456788888888877 3678
Q ss_pred HHHHHHhHHHHHHHHHH
Q 000487 1158 KQALETAKLEYCESLRY 1174 (1463)
Q Consensus 1158 nKALe~ak~eY~kAL~~ 1174 (1463)
.+|+++ |.+|+++
T Consensus 89 ~~A~~~----~~~al~~ 101 (172)
T PRK02603 89 DKALEY----YHQALEL 101 (172)
T ss_pred HHHHHH----HHHHHHh
Confidence 899999 9998886
No 29
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.72 E-value=0.023 Score=74.35 Aligned_cols=95 Identities=21% Similarity=0.296 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchh--hHHHH-HHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhh
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSA--ELQSV-LKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILI 1125 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~a--e~~sv-lKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALi 1125 (1463)
.++..|+.+|++|++.. |.... ...+. .....|+...+|..++.++++.+|+.+|++++.. |+ +-+..
T Consensus 317 g~~~eA~~~l~~Al~~~---p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-----~P-~~~~a 387 (1157)
T PRK11447 317 GDRARAVAQFEKALALD---PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV-----DN-TDSYA 387 (1157)
T ss_pred CCHHHHHHHHHHHHHhC---CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CC-CCHHH
Confidence 46778999999999875 32211 11121 2234567777899999999999999999999987 23 33456
Q ss_pred hhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 000487 1126 NCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRY 1174 (1463)
Q Consensus 1126 yCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~ 1174 (1463)
+.+||.++.. ++.|.+|+++ |.++|++
T Consensus 388 ~~~Lg~~~~~------------------~g~~~eA~~~----y~~aL~~ 414 (1157)
T PRK11447 388 VLGLGDVAMA------------------RKDYAAAERY----YQQALRM 414 (1157)
T ss_pred HHHHHHHHHH------------------CCCHHHHHHH----HHHHHHh
Confidence 7788888877 3566666666 6666654
No 30
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.58 E-value=0.012 Score=70.11 Aligned_cols=71 Identities=10% Similarity=0.107 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccC-cccchhhhh
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSD-YTNIILINC 1127 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D-~tNiALiyC 1127 (1463)
.++..|+++|+++++.. |. -..+++.+|.++...+++.+|+.+|.+++..+..-.+ ...++.+++
T Consensus 615 ~~~~~A~~~~~~~~~~~---~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ---PD-----------SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL 680 (899)
T ss_pred CCHHHHHHHHHHHHHhC---CC-----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 35667888998888653 11 2346677888888889999999999999876432111 122455555
Q ss_pred chhhHH
Q 000487 1128 NLGHGR 1133 (1463)
Q Consensus 1128 NLG~~y 1133 (1463)
..|..-
T Consensus 681 ~~~~~~ 686 (899)
T TIGR02917 681 AAKRTE 686 (899)
T ss_pred HcCCHH
Confidence 555543
No 31
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.44 E-value=0.053 Score=64.81 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=28.3
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHH
Q 000487 1084 WVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRA 1135 (1463)
Q Consensus 1084 nv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~ 1135 (1463)
.+++.+|.+++..+++.+|+.+|++++... .+..-.+.++|.++..
T Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~la~~~~~ 511 (899)
T TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIE------PDFFPAAANLARIDIQ 511 (899)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhC------CCcHHHHHHHHHHHHH
Confidence 466777777777777777777777777542 1223344455555443
No 32
>PRK12370 invasion protein regulator; Provisional
Probab=96.32 E-value=0.074 Score=64.63 Aligned_cols=113 Identities=15% Similarity=0.018 Sum_probs=77.2
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHH--HHHHHHHHHHHHHHHHHHHHHhccCcccchh
Q 000487 1047 AENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIR--LERKEMEKGEHAFANAINAFKEVSDYTNIIL 1124 (1463)
Q Consensus 1047 ~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~y--meq~nlkKAe~afekAI~aF~eV~D~tNiAL 1124 (1463)
...++..|+.+|++|++.- |.. ......+|+++..++... ...+.+.+|+.++++|+.. | ++-+.
T Consensus 273 ~~~~~~~A~~~~~~Al~ld---P~~----a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l-----d-P~~~~ 339 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMS---PNS----IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL-----D-HNNPQ 339 (553)
T ss_pred CHHHHHHHHHHHHHHHhcC---Ccc----HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc-----C-CCCHH
Confidence 3567889999999999764 322 234455566665555432 2346789999999999866 3 34455
Q ss_pred hhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHH
Q 000487 1125 INCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQF 1204 (1463)
Q Consensus 1125 iyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~ql 1204 (1463)
.+.++|.++.. ++.|.+|+++ |.+||+..- ..
T Consensus 340 a~~~lg~~~~~------------------~g~~~~A~~~----~~~Al~l~P--------------------------~~ 371 (553)
T PRK12370 340 ALGLLGLINTI------------------HSEYIVGSLL----FKQANLLSP--------------------------IS 371 (553)
T ss_pred HHHHHHHHHHH------------------ccCHHHHHHH----HHHHHHhCC--------------------------CC
Confidence 67777877665 3678889998 888887521 12
Q ss_pred HHHHHHHHHhhhhccc
Q 000487 1205 AHTYLRLGMLLAREDT 1220 (1463)
Q Consensus 1205 A~TYlnLG~LLqde~~ 1220 (1463)
+.+|+.+|.+|.....
T Consensus 372 ~~a~~~lg~~l~~~G~ 387 (553)
T PRK12370 372 ADIKYYYGWNLFMAGQ 387 (553)
T ss_pred HHHHHHHHHHHHHCCC
Confidence 4567888888877776
No 33
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.30 E-value=0.16 Score=63.86 Aligned_cols=120 Identities=10% Similarity=-0.001 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcc--cchhhhh
Q 000487 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYT--NIILINC 1127 (1463)
Q Consensus 1050 NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~t--NiALiyC 1127 (1463)
++..|...|++|+.... ........+++.+.+|.+++.+|++..|+.++++++...+..++.. ..+.+++
T Consensus 506 ~~~~A~~~~~~al~~~~--------~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 506 ELARALAMMQQTEQMAR--------QHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred CHHHHHHHHHHHHHHHh--------hhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 56678888888887652 2222334567888889999999999999999999999988876432 2344455
Q ss_pred chhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHH
Q 000487 1128 NLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHT 1207 (1463)
Q Consensus 1128 NLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~T 1207 (1463)
++|.++.. ++.+.+|.+. +.+++.+..... ....+.+
T Consensus 578 ~la~~~~~------------------~G~~~~A~~~----~~~al~~~~~~~---------------------~~~~~~~ 614 (903)
T PRK04841 578 IRAQLLWE------------------WARLDEAEQC----ARKGLEVLSNYQ---------------------PQQQLQC 614 (903)
T ss_pred HHHHHHHH------------------hcCHHHHHHH----HHHhHHhhhccC---------------------chHHHHH
Confidence 66666554 3678888888 888888765322 1124567
Q ss_pred HHHHHHhhhhccc
Q 000487 1208 YLRLGMLLAREDT 1220 (1463)
Q Consensus 1208 YlnLG~LLqde~~ 1220 (1463)
+..+|.++.....
T Consensus 615 ~~~la~~~~~~G~ 627 (903)
T PRK04841 615 LAMLAKISLARGD 627 (903)
T ss_pred HHHHHHHHHHcCC
Confidence 7889998888777
No 34
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.15 E-value=0.03 Score=46.35 Aligned_cols=83 Identities=20% Similarity=0.264 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhc
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCN 1128 (1463)
.++..|+.+|+++++.. |.. ..++..+|.+++.++++.+|+.+|.+++....... .++.+
T Consensus 14 ~~~~~A~~~~~~~~~~~---~~~-----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~ 73 (100)
T cd00189 14 GDYDEALEYYEKALELD---PDN-----------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------KAYYN 73 (100)
T ss_pred hcHHHHHHHHHHHHhcC---Ccc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------hHHHH
Confidence 46778899999988764 221 16788899999999999999999999997653322 34455
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 000487 1129 LGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLR 1173 (1463)
Q Consensus 1129 LG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~ 1173 (1463)
+|.++.. ++.+.+|.++ +.++++
T Consensus 74 ~~~~~~~------------------~~~~~~a~~~----~~~~~~ 96 (100)
T cd00189 74 LGLAYYK------------------LGKYEEALEA----YEKALE 96 (100)
T ss_pred HHHHHHH------------------HHhHHHHHHH----HHHHHc
Confidence 5555444 2556677766 666654
No 35
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.14 E-value=0.27 Score=63.42 Aligned_cols=155 Identities=21% Similarity=0.203 Sum_probs=101.6
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhc
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCN 1128 (1463)
.++..+++.++-|.+.. ...--++-.|+-||+-|-.+|+|.+|..+|-.|+++ |..|..|-+--
T Consensus 284 ~dy~~v~~la~~ai~~t-----------~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-----~~d~~~l~~~G 347 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIKNT-----------ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-----DNDNFVLPLVG 347 (1018)
T ss_pred ccHHHHHHHHHHHHHhh-----------hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-----CCCCccccccc
Confidence 35677777777777443 344456788999999999999999999999999964 55668888888
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhhHHHH--HHHHHHhHHHH-------HHHHHHHHHHhhhhhhhhhhhccccccchhh
Q 000487 1129 LGHGRRALAEEMVSKVESLKIHTIFQNMY--KQALETAKLEY-------CESLRYYRAAKLQLNSLVEEAGSVSNSLRME 1199 (1463)
Q Consensus 1129 LG~~yR~LAee~~sk~~~~k~~~~~q~~Y--nKALe~ak~eY-------~kAL~~y~~aK~~l~~~~~~~~~~~~~Lwde 1199 (1463)
||-.|-...+...+..-..+.+-...+.| ++.+-+-=..+ .+|..+++... +
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~-------------------~ 408 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL-------------------E 408 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH-------------------h
Confidence 99888887775555532222221111111 12222211112 33444444433 1
Q ss_pred HHHHHHHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHHHHhhhc
Q 000487 1200 VHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMG 1267 (1463)
Q Consensus 1200 V~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALkLyEslG 1267 (1463)
+.-+-+.+|+.||-+|--.++ +. . + +||.+|+.++++.|
T Consensus 409 ~~~~d~~a~l~laql~e~~d~----~~---------------------s-L---~~~~~A~d~L~~~~ 447 (1018)
T KOG2002|consen 409 QTPVDSEAWLELAQLLEQTDP----WA---------------------S-L---DAYGNALDILESKG 447 (1018)
T ss_pred cccccHHHHHHHHHHHHhcCh----HH---------------------H-H---HHHHHHHHHHHHcC
Confidence 224557789999999887777 33 3 6 99999999888887
No 36
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.04 E-value=0.051 Score=57.37 Aligned_cols=169 Identities=11% Similarity=0.098 Sum_probs=98.4
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhc
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCN 1128 (1463)
.++..|++.|+++++.. |..+ ....++..+|..++.++++.+|+..|+++++.+- +...+...+.+
T Consensus 47 ~~~~~A~~~~~~~~~~~---p~~~--------~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~a~~~ 112 (235)
T TIGR03302 47 GDYTEAIKYFEALESRY---PFSP--------YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP---NHPDADYAYYL 112 (235)
T ss_pred CCHHHHHHHHHHHHHhC---CCch--------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---CCCchHHHHHH
Confidence 45678888888888765 3221 1223567888999999999999999999997664 44455556677
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHH
Q 000487 1129 LGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTY 1208 (1463)
Q Consensus 1129 LG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TY 1208 (1463)
+|.++... +.... ...+.+.+|++. |.++++.+-.......+.. .. ....-.++...
T Consensus 113 ~g~~~~~~-------~~~~~---~~~~~~~~A~~~----~~~~~~~~p~~~~~~~a~~-~~--------~~~~~~~~~~~ 169 (235)
T TIGR03302 113 RGLSNYNQ-------IDRVD---RDQTAAREAFEA----FQELIRRYPNSEYAPDAKK-RM--------DYLRNRLAGKE 169 (235)
T ss_pred HHHHHHHh-------ccccc---CCHHHHHHHHHH----HHHHHHHCCCChhHHHHHH-HH--------HHHHHHHHHHH
Confidence 77776542 00000 112677788888 8877765443220000000 00 00112233445
Q ss_pred HHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHHHHhhhchhhhhHHHHHHHHHhhhhhh
Q 000487 1209 LRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQRD 1287 (1463)
Q Consensus 1209 lnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALkLyEslG~L~kqeAAyah~qLAs~yrd 1287 (1463)
+.+|.++.+... +. +++ +.+++++..+.... ..+.+++.+|..|..
T Consensus 170 ~~~a~~~~~~g~----~~---------------------~A~---~~~~~al~~~p~~~-----~~~~a~~~l~~~~~~ 215 (235)
T TIGR03302 170 LYVARFYLKRGA----YV---------------------AAI---NRFETVVENYPDTP-----ATEEALARLVEAYLK 215 (235)
T ss_pred HHHHHHHHHcCC----hH---------------------HHH---HHHHHHHHHCCCCc-----chHHHHHHHHHHHHH
Confidence 677777766666 33 334 78888887765432 124556666644443
No 37
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.03 E-value=0.14 Score=63.77 Aligned_cols=51 Identities=10% Similarity=-0.048 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 000487 1048 ENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINA 1112 (1463)
Q Consensus 1048 E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~a 1112 (1463)
..++..|+..|++++++- |.. +.++..||..+..++++.+|+.+|.+++.+
T Consensus 89 ~g~~~~A~~~l~~~l~~~---P~~-----------~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l 139 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVN---VCQ-----------PEDVLLVASVLLKSKQYATVADLAEQAWLA 139 (656)
T ss_pred cCCHHHHHHHHHHHHHhC---CCC-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778999999998774 222 335788899999999999999999999976
No 38
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.79 E-value=0.023 Score=57.57 Aligned_cols=85 Identities=13% Similarity=0.001 Sum_probs=68.4
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhh
Q 000487 1048 ENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINC 1127 (1463)
Q Consensus 1048 E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyC 1127 (1463)
..++..|+++|+.|+.+- -.-..+++.+|.++...+++.+|+.+|.+++.. .++-+-.+.
T Consensus 37 ~g~~~~A~~~~~~al~~~--------------P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l------~p~~~~a~~ 96 (144)
T PRK15359 37 EGDYSRAVIDFSWLVMAQ--------------PWSWRAHIALAGTWMMLKEYTTAINFYGHALML------DASHPEPVY 96 (144)
T ss_pred cCCHHHHHHHHHHHHHcC--------------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCCCcHHHH
Confidence 345678899999998663 123577899999999999999999999999975 346688899
Q ss_pred chhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 000487 1128 NLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRY 1174 (1463)
Q Consensus 1128 NLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~ 1174 (1463)
|+|..+.. .+.+..|+++ |.+||++
T Consensus 97 ~lg~~l~~------------------~g~~~eAi~~----~~~Al~~ 121 (144)
T PRK15359 97 QTGVCLKM------------------MGEPGLAREA----FQTAIKM 121 (144)
T ss_pred HHHHHHHH------------------cCCHHHHHHH----HHHHHHh
Confidence 99998877 3678888888 8888874
No 39
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.76 E-value=0.028 Score=46.58 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=47.8
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHh
Q 000487 1085 VCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETA 1164 (1463)
Q Consensus 1085 v~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~a 1164 (1463)
++..+|..++.++++.+|+..|.++++..... ..++.++|.++.. ++.|.+|+++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~------------------~~~~~~a~~~- 56 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN------ADAYYNLAAAYYK------------------LGKYEEALED- 56 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHH------------------HHHHHHHHHH-
Confidence 57889999999999999999999998764322 2566777777766 3677788888
Q ss_pred HHHHHHHHHH
Q 000487 1165 KLEYCESLRY 1174 (1463)
Q Consensus 1165 k~eY~kAL~~ 1174 (1463)
|.++++.
T Consensus 57 ---~~~~~~~ 63 (100)
T cd00189 57 ---YEKALEL 63 (100)
T ss_pred ---HHHHHhC
Confidence 7777764
No 40
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.51 E-value=0.11 Score=65.34 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhch
Q 000487 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNL 1129 (1463)
Q Consensus 1050 NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNL 1129 (1463)
++..|..++++|+..+ +.. .....+.+.+-+|..+...|++..|+.+|++++..+++.++....+..++++
T Consensus 467 ~~~~A~~~~~~al~~~---~~~------~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 467 DPEEAERLAELALAEL---PLT------WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred CHHHHHHHHHHHHhcC---CCc------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 5678999999998754 221 1223556778899999999999999999999999999999988888888999
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000487 1130 GHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAA 1178 (1463)
Q Consensus 1130 G~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~a 1178 (1463)
|.++.. ++.+..|.++ +.+++++....
T Consensus 538 a~~~~~------------------~G~~~~A~~~----~~~al~~~~~~ 564 (903)
T PRK04841 538 SEILFA------------------QGFLQAAYET----QEKAFQLIEEQ 564 (903)
T ss_pred HHHHHH------------------CCCHHHHHHH----HHHHHHHHHHh
Confidence 998777 4788899999 89999876554
No 41
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.49 E-value=0.063 Score=68.87 Aligned_cols=138 Identities=24% Similarity=0.299 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCccc-chhhhh
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTN-IILINC 1127 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tN-iALiyC 1127 (1463)
..+.+|+.||.++|+.- -+=.||-|.||.+.-++++|.. |+.+|.+|-+-++ ++-.+-
T Consensus 626 k~~~KAlq~y~kvL~~d--------------pkN~yAANGIgiVLA~kg~~~~-------A~dIFsqVrEa~~~~~dv~l 684 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRND--------------PKNMYAANGIGIVLAEKGRFSE-------ARDIFSQVREATSDFEDVWL 684 (1018)
T ss_pred HHHHHHHHHHHHHHhcC--------------cchhhhccchhhhhhhccCchH-------HHHHHHHHHHHHhhCCceee
Confidence 56778888888888553 2335899999999988887755 5556666666666 778889
Q ss_pred chhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHH
Q 000487 1128 NLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHT 1207 (1463)
Q Consensus 1128 NLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~T 1207 (1463)
||||+|-. ++.|..|++. |...|+=+..-. .-+|.-.||-+
T Consensus 685 Nlah~~~e------------------~~qy~~AIqm----Ye~~lkkf~~~~-----------------~~~vl~~Lara 725 (1018)
T KOG2002|consen 685 NLAHCYVE------------------QGQYRLAIQM----YENCLKKFYKKN-----------------RSEVLHYLARA 725 (1018)
T ss_pred eHHHHHHH------------------HHHHHHHHHH----HHHHHHHhcccC-----------------CHHHHHHHHHH
Confidence 99999877 5889999999 999998766221 23466777777
Q ss_pred HHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHHHHhhhchhhhhHHHHHHHHHh
Q 000487 1208 YLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLA 1282 (1463)
Q Consensus 1208 YlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALkLyEslG~L~kqeAAyah~qLA 1282 (1463)
|+.-|+ +. + |.++..+|+-+.=++ +.-++..|..+++||
T Consensus 726 ~y~~~~-----------~~---------------------e---ak~~ll~a~~~~p~~-~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 726 WYEAGK-----------LQ---------------------E---AKEALLKARHLAPSN-TSVKFNLALVLKKLA 764 (1018)
T ss_pred HHHhhh-----------HH---------------------H---HHHHHHHHHHhCCcc-chHHhHHHHHHHHHH
Confidence 776665 12 1 114444454443333 456888899999988
No 42
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=95.40 E-value=0.098 Score=68.37 Aligned_cols=58 Identities=9% Similarity=-0.094 Sum_probs=45.2
Q ss_pred CCccchhHHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHhcccc
Q 000487 473 RSDSLFSLGTLLYRIAHRLSLSMASDNRAKCARFIKKCLDFLDEPDHLVMRAFAHEQFARLILNYEE 539 (1463)
Q Consensus 473 ~n~ft~~vA~LlYRvA~rm~~s~~~~~~~~~~~LL~nCL~LLd~~~hp~i~Asa~e~lA~L~L~~~~ 539 (1463)
.+||..-.....|--|.+.+...+.. .++.+|+.||++=+.. + .+++.||.+|+.-++
T Consensus 36 ~~~~~~~~~~~~f~~a~~~~~~Gd~~---~A~~~l~~Al~~dP~n--~----~~~~~LA~~yl~~g~ 93 (987)
T PRK09782 36 LSDYRHFVIYPRLDKALKAQKNNDEA---TAIREFEYIHQQVPDN--I----PLTLYLAEAYRHFGH 93 (987)
T ss_pred CchHHHHHHHHHHHHHHHHHhCCCHH---HHHHHHHHHHHhCCCC--H----HHHHHHHHHHHHCCC
Confidence 45677777788888888888766554 7899999999987665 3 344999999998877
No 43
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.30 E-value=0.031 Score=64.72 Aligned_cols=86 Identities=10% Similarity=0.127 Sum_probs=68.9
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhh
Q 000487 1048 ENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINC 1127 (1463)
Q Consensus 1048 E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyC 1127 (1463)
+.++..|+++|++|++.- |. -..++..+|..++..+++..|+.+|.+||.+. .+.+..|.
T Consensus 15 ~~~~~~Ai~~~~~Al~~~---P~-----------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~------P~~~~a~~ 74 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLD---PN-----------NAELYADRAQANIKLGNFTEAVADANKAIELD------PSLAKAYL 74 (356)
T ss_pred cCCHHHHHHHHHHHHHhC---CC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCCHHHHH
Confidence 357889999999999774 22 13467888999999999999999999999874 35567788
Q ss_pred chhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 000487 1128 NLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYY 1175 (1463)
Q Consensus 1128 NLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y 1175 (1463)
++|.++.. .+.|..|+++ |.+||++.
T Consensus 75 ~lg~~~~~------------------lg~~~eA~~~----~~~al~l~ 100 (356)
T PLN03088 75 RKGTACMK------------------LEEYQTAKAA----LEKGASLA 100 (356)
T ss_pred HHHHHHHH------------------hCCHHHHHHH----HHHHHHhC
Confidence 88888776 3678888888 88888765
No 44
>PRK12370 invasion protein regulator; Provisional
Probab=95.28 E-value=0.054 Score=65.75 Aligned_cols=86 Identities=19% Similarity=0.073 Sum_probs=67.6
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhh
Q 000487 1047 AENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILIN 1126 (1463)
Q Consensus 1047 ~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiy 1126 (1463)
.+..+..|+.+|++|++.- | .-+.++..+|.+++.++++.+|+.+|++|+.. .+|-+..+
T Consensus 316 ~~~~~~~A~~~~~~Al~ld---P-----------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------~P~~~~a~ 375 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELD---H-----------NNPQALGLLGLINTIHSEYIVGSLLFKQANLL------SPISADIK 375 (553)
T ss_pred cchHHHHHHHHHHHHHhcC---C-----------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHH
Confidence 4567899999999999663 1 24567778899999999999999999999976 35566678
Q ss_pred hchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 000487 1127 CNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRY 1174 (1463)
Q Consensus 1127 CNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~ 1174 (1463)
.++|.++.. .+.|.+|++. |.+|++.
T Consensus 376 ~~lg~~l~~------------------~G~~~eAi~~----~~~Al~l 401 (553)
T PRK12370 376 YYYGWNLFM------------------AGQLEEALQT----INECLKL 401 (553)
T ss_pred HHHHHHHHH------------------CCCHHHHHHH----HHHHHhc
Confidence 888888766 3667778888 7777765
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.18 Score=62.17 Aligned_cols=161 Identities=17% Similarity=0.161 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhc-
Q 000487 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN- 1128 (1463)
Q Consensus 1050 NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCN- 1128 (1463)
+++.|-.||-+|-. +-..-|-+|--.|..+-..++-+.|..||-+|-+.|..-.=+.-++.+-+-
T Consensus 327 k~seARry~SKat~--------------lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 327 KYSEARRYFSKATT--------------LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR 392 (611)
T ss_pred CcHHHHHHHHHHhh--------------cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 44555566655553 334567777778999888999999999999999999887777765555444
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHH
Q 000487 1129 LGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTY 1208 (1463)
Q Consensus 1129 LG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TY 1208 (1463)
++.. .||+.+-.+.-..--.+-.+-.+.=-+.+-+.+|.+|++++..+..-...+.+|. + .|....-.|+|+|
T Consensus 393 t~n~--kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~----~-~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 393 TNNL--KLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK----I-FWEPTLNNLGHAY 465 (611)
T ss_pred hccH--HHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc----c-chhHHHHhHHHHH
Confidence 3333 2344333332111001111122222334445678888888877762222222221 1 4777777777777
Q ss_pred HHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHHHHhhh
Q 000487 1209 LRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESM 1266 (1463)
Q Consensus 1209 lnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALkLyEsl 1266 (1463)
-.+++ |+ ++| +++++||.++..+
T Consensus 466 Rkl~~-----------~~---------------------eAI---~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 466 RKLNK-----------YE---------------------EAI---DYYQKALLLSPKD 488 (611)
T ss_pred HHHhh-----------HH---------------------HHH---HHHHHHHHcCCCc
Confidence 66654 44 557 9999999999988
No 46
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.38 Score=59.02 Aligned_cols=203 Identities=20% Similarity=0.220 Sum_probs=112.3
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCccc-chhh
Q 000487 1047 AENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTN-IILI 1125 (1463)
Q Consensus 1047 ~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tN-iALi 1125 (1463)
.+.++..|++||..|+.+- .-++. +|+.+..|++.+.+..+..-.++|+..-++.--..| |+-+
T Consensus 236 kkk~f~~a~q~y~~a~el~--------~~it~-------~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~ 300 (539)
T KOG0548|consen 236 KKKDFETAIQHYAKALELA--------TDITY-------LNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKA 300 (539)
T ss_pred HhhhHHHHHHHHHHHHhHh--------hhhHH-------HHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHH
Confidence 5678889999999999663 22222 455667777777777777777777776655543333 4444
Q ss_pred hhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHH
Q 000487 1126 NCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFA 1205 (1463)
Q Consensus 1126 yCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA 1205 (1463)
..-+|..|.. +++|..|+++ |++||.-++... .|+.. +.+
T Consensus 301 ~~r~g~a~~k------------------~~~~~~ai~~----~~kaLte~Rt~~-~ls~l-----------------k~~ 340 (539)
T KOG0548|consen 301 LARLGNAYTK------------------REDYEGAIKY----YQKALTEHRTPD-LLSKL-----------------KEA 340 (539)
T ss_pred HHHhhhhhhh------------------HHhHHHHHHH----HHHHhhhhcCHH-HHHHH-----------------HHH
Confidence 4344444444 3789999999 999988776632 11111 111
Q ss_pred HHHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHH-----HHHHHHHHhhhc------hhhhhHH
Q 000487 1206 HTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDA-----IREALSLYESMG------DLRKQEA 1274 (1463)
Q Consensus 1206 ~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Da-----i~eALkLyEslG------~L~kqeA 1274 (1463)
.--...+.-++-..|.. ++.+|. ..||+ |.+|++.|+.-- +-.+-..
T Consensus 341 Ek~~k~~e~~a~~~pe~--------------------A~e~r~--kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNR 398 (539)
T KOG0548|consen 341 EKALKEAERKAYINPEK--------------------AEEERE--KGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNR 398 (539)
T ss_pred HHHHHHHHHHHhhChhH--------------------HHHHHH--HHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 11122222222222211 000111 12233 234555555431 2334456
Q ss_pred HHHHHHHhhhhhh--HHHHhhhcccccCCCCCCchhHHHHHHHhhhHHHHHHHHHHhhhCCC
Q 000487 1275 AYAYFQLACYQRD--CFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGPR 1334 (1463)
Q Consensus 1275 Ayah~qLAs~yrd--~cLr~Le~d~k~e~~~K~~~~~iq~ak~y~sLAe~nyqKAle~Y~p~ 1334 (1463)
|.||..|+.+-+- +|-+.++.++. ..+-++-++ .+-.+.+.|.||++.|..+
T Consensus 399 Aac~~kL~~~~~aL~Da~~~ieL~p~------~~kgy~RKg--~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 399 AACYLKLGEYPEALKDAKKCIELDPN------FIKAYLRKG--AALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCch------HHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 7899999987765 66777777642 112233222 2222445599999999887
No 47
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.20 E-value=0.047 Score=50.50 Aligned_cols=91 Identities=12% Similarity=0.164 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhc
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCN 1128 (1463)
.++..|++.|+++++.. |.. .....++..+|.+++..+++..|+.+|++++..+ .++.....++-+
T Consensus 16 ~~~~~A~~~~~~~~~~~---~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~ 81 (119)
T TIGR02795 16 GDYADAIQAFQAFLKKY---PKS--------TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY---PKSPKAPDALLK 81 (119)
T ss_pred CCHHHHHHHHHHHHHHC---CCc--------cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC---CCCCcccHHHHH
Confidence 57788999998888653 111 1234677889999999999999999999999765 343445667788
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 000487 1129 LGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYY 1175 (1463)
Q Consensus 1129 LG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y 1175 (1463)
+|.++.. .+.+.+|+++ |.++++.+
T Consensus 82 ~~~~~~~------------------~~~~~~A~~~----~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQE------------------LGDKEKAKAT----LQQVIKRY 106 (119)
T ss_pred HHHHHHH------------------hCChHHHHHH----HHHHHHHC
Confidence 8888765 2566677777 77766654
No 48
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.17 E-value=0.084 Score=50.92 Aligned_cols=88 Identities=14% Similarity=-0.045 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhc
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCN 1128 (1463)
.++..|+++|++++..- |. -.+++..+|.+++.++++..|+.+|..+++.+ +. -.-.+.+
T Consensus 31 ~~~~~A~~~~~~~~~~~---p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----p~-~~~~~~~ 90 (135)
T TIGR02552 31 GRYDEALKLFQLLAAYD---PY-----------NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-----PD-DPRPYFH 90 (135)
T ss_pred ccHHHHHHHHHHHHHhC---CC-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CC-ChHHHHH
Confidence 35677888888777553 11 24788899999999999999999999999864 33 3556677
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000487 1129 LGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAA 1178 (1463)
Q Consensus 1129 LG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~a 1178 (1463)
+|++|.. .+.|.+|++. |.++++.....
T Consensus 91 la~~~~~------------------~g~~~~A~~~----~~~al~~~p~~ 118 (135)
T TIGR02552 91 AAECLLA------------------LGEPESALKA----LDLAIEICGEN 118 (135)
T ss_pred HHHHHHH------------------cCCHHHHHHH----HHHHHHhcccc
Confidence 8887776 3578888888 88888875433
No 49
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.16 E-value=0.33 Score=60.65 Aligned_cols=214 Identities=11% Similarity=0.039 Sum_probs=121.1
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHH----HHHHHHHHHHHHHhccCcccchh
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEK----GEHAFANAINAFKEVSDYTNIIL 1124 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkK----Ae~afekAI~aF~eV~D~tNiAL 1124 (1463)
.++..|+..|++|++.- |. -..+++.||..++.++++.+ |+.+|++++... ++.+.
T Consensus 226 g~~~eA~~~~~~al~~~---p~-----------~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~------P~~~~ 285 (656)
T PRK15174 226 GKYQEAIQTGESALARG---LD-----------GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN------SDNVR 285 (656)
T ss_pred CCHHHHHHHHHHHHhcC---CC-----------CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC------CCCHH
Confidence 34668999999999653 21 13456667777777777764 788899888754 35567
Q ss_pred hhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHH
Q 000487 1125 INCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQF 1204 (1463)
Q Consensus 1125 iyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~ql 1204 (1463)
+++++|.++.. ++.|.+|+++ |.++++..- . .
T Consensus 286 a~~~lg~~l~~------------------~g~~~eA~~~----l~~al~l~P---------------~-----------~ 317 (656)
T PRK15174 286 IVTLYADALIR------------------TGQNEKAIPL----LQQSLATHP---------------D-----------L 317 (656)
T ss_pred HHHHHHHHHHH------------------CCCHHHHHHH----HHHHHHhCC---------------C-----------C
Confidence 88888888776 4678888888 888886411 1 2
Q ss_pred HHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHHHHhhhchhhhhHHHHHHHHHhhh
Q 000487 1205 AHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACY 1284 (1463)
Q Consensus 1205 A~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALkLyEslG~L~kqeAAyah~qLAs~ 1284 (1463)
..++++||.+|..... ++ +.+ +.+++++..--.. ......+|.++.++|.+
T Consensus 318 ~~a~~~La~~l~~~G~----~~---------------------eA~---~~l~~al~~~P~~-~~~~~~~a~al~~~G~~ 368 (656)
T PRK15174 318 PYVRAMYARALRQVGQ----YT---------------------AAS---DEFVQLAREKGVT-SKWNRYAAAALLQAGKT 368 (656)
T ss_pred HHHHHHHHHHHHHCCC----HH---------------------HHH---HHHHHHHHhCccc-hHHHHHHHHHHHHCCCH
Confidence 2445667777777666 33 223 4444444431111 11122234445555432
Q ss_pred hhh--HHHHhhhcccccCCCCCCchhHHHHHHHhhhHHHHHHHHHHhhhCCCCCchhH-HHHHhhccchhhhhcccchhH
Q 000487 1285 QRD--CFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGPRSHPTMY-LTILMERSDLSFRLSCFLHSN 1361 (1463)
Q Consensus 1285 yrd--~cLr~Le~d~k~e~~~K~~~~~iq~ak~y~sLAe~nyqKAle~Y~p~~hp~~~-L~IlmERsAL~~~~st~~~S~ 1361 (1463)
-.- +|.+.++.+.+ . . .+.|. .|-..|.+|++.++...--..+ .++-.+.|..- ...++.+
T Consensus 369 deA~~~l~~al~~~P~------~----~--~~~~~-ea~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~---~~~~~~~ 432 (656)
T PRK15174 369 SEAESVFEHYIQARAS------H----L--PQSFE-EGLLALDGQISAVNLPPERLDWAWEVAGRQSGIE---RDEWERR 432 (656)
T ss_pred HHHHHHHHHHHHhChh------h----c--hhhHH-HHHHHHHHHHHhcCCccchhhHHHHHhcccccCC---hHHHHHH
Confidence 222 44455555532 0 1 12333 4567788888887655321122 23333333222 3455566
Q ss_pred H----HHHHHHHHHHccc
Q 000487 1362 A----MLETALSCLLEGR 1375 (1463)
Q Consensus 1362 v----mLe~aL~~mLe~r 1375 (1463)
+ ..+.-|---|+||
T Consensus 433 ~~~~~~~~~~~~~~~~~~ 450 (656)
T PRK15174 433 AKWGYLADNFLLDWLECR 450 (656)
T ss_pred HHhhHHHHHHHHHHHHhc
Confidence 5 4555666677776
No 50
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.12 Score=61.95 Aligned_cols=146 Identities=16% Similarity=0.119 Sum_probs=94.3
Q ss_pred cccceeeeccCCCCCChhhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHH
Q 000487 1031 KNGGIFKYLEDPVVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAI 1110 (1463)
Q Consensus 1031 ~~GgiFkyL~~~~~~D~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI 1110 (1463)
-+|.++.|. .|..+|+..|++||.. ....+.+....-.-+.--++-+=|.-.+++|+|.+|+.+|..||
T Consensus 208 vrg~~~yy~---------~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal 276 (486)
T KOG0550|consen 208 VRGLCLYYN---------DNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL 276 (486)
T ss_pred hcccccccc---------cchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh
Confidence 358888888 4788999999999977 33444444445555555666777778888999999999999999
Q ss_pred HHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 000487 1111 NAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAG 1190 (1463)
Q Consensus 1111 ~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~ 1190 (1463)
.+--. ...+.|.+|+|.+.++-.|..--.. ...++.|++. ...|.+||-.=+....-
T Consensus 277 ~idP~--n~~~naklY~nra~v~~rLgrl~ea-----------isdc~~Al~i-D~syikall~ra~c~l~--------- 333 (486)
T KOG0550|consen 277 NIDPS--NKKTNAKLYGNRALVNIRLGRLREA-----------ISDCNEALKI-DSSYIKALLRRANCHLA--------- 333 (486)
T ss_pred cCCcc--ccchhHHHHHHhHhhhcccCCchhh-----------hhhhhhhhhc-CHHHHHHHHHHHHHHHH---------
Confidence 87554 3334788888876665554431111 1345555554 44566555443333300
Q ss_pred cccccchhhHHHHHHHHHHHHHHhhhhc
Q 000487 1191 SVSNSLRMEVHTQFAHTYLRLGMLLARE 1218 (1463)
Q Consensus 1191 ~~~~~LwdeV~~qlA~TYlnLG~LLqde 1218 (1463)
.. .|+-|.-+++=++.+...
T Consensus 334 le--------~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 334 LE--------KWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HH--------HHHHHHHHHHHHHhhccc
Confidence 01 577777777766665544
No 51
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.91 E-value=0.032 Score=68.34 Aligned_cols=124 Identities=21% Similarity=0.327 Sum_probs=93.6
Q ss_pred cceeeeccCCCCCChhhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 000487 1033 GGIFKYLEDPVVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINA 1112 (1463)
Q Consensus 1033 GgiFkyL~~~~~~D~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~a 1112 (1463)
.||-.||. ..+.+|+.||+.||.+- | .=+-.||.||...-+.....+|+.||.+|+.+
T Consensus 436 LGVLy~ls--------~efdraiDcf~~AL~v~---P-----------nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL 493 (579)
T KOG1125|consen 436 LGVLYNLS--------GEFDRAVDCFEAALQVK---P-----------NDYLLWNRLGATLANGNRSEEAISAYNRALQL 493 (579)
T ss_pred hHHHHhcc--------hHHHHHHHHHHHHHhcC---C-----------chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc
Confidence 57777774 46889999999999663 1 11336999999998888999999999999966
Q ss_pred HHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 000487 1113 FKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSV 1192 (1463)
Q Consensus 1113 F~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~ 1192 (1463)
.+|++..-.|||.-+.+ .++|.+|+++ |..||.+-..-. -..++...
T Consensus 494 ------qP~yVR~RyNlgIS~mN------------------lG~ykEA~~h----lL~AL~mq~ks~-----~~~~~~~~ 540 (579)
T KOG1125|consen 494 ------QPGYVRVRYNLGISCMN------------------LGAYKEAVKH----LLEALSMQRKSR-----NHNKAPMA 540 (579)
T ss_pred ------CCCeeeeehhhhhhhhh------------------hhhHHHHHHH----HHHHHHhhhccc-----ccccCCcc
Confidence 68999999999999988 5899999999 999998766522 22223333
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhccc
Q 000487 1193 SNSLRMEVHTQFAHTYLRLGMLLAREDT 1220 (1463)
Q Consensus 1193 ~~~LwdeV~~qlA~TYlnLG~LLqde~~ 1220 (1463)
+.+|| .++|++-..-..+.
T Consensus 541 se~iw---------~tLR~als~~~~~D 559 (579)
T KOG1125|consen 541 SENIW---------QTLRLALSAMNRSD 559 (579)
T ss_pred hHHHH---------HHHHHHHHHcCCch
Confidence 34555 35666666666666
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.41 Score=58.28 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000487 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFK 1114 (1463)
Q Consensus 1050 NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~ 1114 (1463)
.=.+|+..|+.||+. -++-..||.-||.-|++.+|-..|+.+|..||+++.
T Consensus 345 eHEKAv~YFkRALkL--------------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p 395 (559)
T KOG1155|consen 345 EHEKAVMYFKRALKL--------------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP 395 (559)
T ss_pred hHHHHHHHHHHHHhc--------------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc
Confidence 346899999999954 467778999999999999999999999999998764
No 53
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.57 E-value=0.37 Score=57.27 Aligned_cols=138 Identities=13% Similarity=0.059 Sum_probs=95.4
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 000487 1084 WVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALET 1163 (1463)
Q Consensus 1084 nv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ 1163 (1463)
-+..-|.+-+=.+|.+..|.++.++|.++-=+-+|.+-.|++.|-+|.+||..++ -..|+.-
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd------------------~e~af~r 268 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGD------------------LERAFRR 268 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhccc------------------HhHHHHH
Confidence 3445566665567999999999999999999999999999999999999999443 2235555
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhh
Q 000487 1164 AKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRK 1243 (1463)
Q Consensus 1164 ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~e 1243 (1463)
|.+|..+..... -+||-+.+-.+. ++..+ ....-|+. -
T Consensus 269 ----Ye~Am~~m~~~g-----------------------------drmgqv~al~g~-Akc~~-----~~r~~~k~---~ 306 (518)
T KOG1941|consen 269 ----YEQAMGTMASLG-----------------------------DRMGQVEALDGA-AKCLE-----TLRLQNKI---C 306 (518)
T ss_pred ----HHHHHHHHhhhh-----------------------------hhHHHHHHHHHH-HHHHH-----HHHHhhcc---c
Confidence 777766665554 123333222221 11111 00001110 0
Q ss_pred hhhhccccHHHHHHHHHHHHhhhchhhhhHHHHHHHHHhhhhhhH
Q 000487 1244 ELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQRDC 1288 (1463)
Q Consensus 1244 eleK~eIsa~Dai~eALkLyEslG~L~kqeAAyah~qLAs~yrd~ 1288 (1463)
+ =..| |++.+++.+..+.| .|.-+-.+|-+||.+||..
T Consensus 307 ~--Cral---e~n~r~levA~~IG--~K~~vlK~hcrla~iYrs~ 344 (518)
T KOG1941|consen 307 N--CRAL---EFNTRLLEVASSIG--AKLSVLKLHCRLASIYRSK 344 (518)
T ss_pred c--cchh---HHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhc
Confidence 1 1346 99999999999999 8888899999999999874
No 54
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.45 E-value=0.066 Score=46.63 Aligned_cols=51 Identities=14% Similarity=0.266 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHH-HHHHHHHHHHHHHHH
Q 000487 1048 ENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERK-EMEKGEHAFANAINA 1112 (1463)
Q Consensus 1048 E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~-nlkKAe~afekAI~a 1112 (1463)
+.++..|+++|++|++.- ..-..+++.+|.+++.++ ++.+|+.+|+++|++
T Consensus 16 ~~~~~~A~~~~~~ai~~~--------------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELD--------------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp TTHHHHHHHHHHHHHHHS--------------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC--------------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 468899999999999774 122338999999999998 899999999999975
No 55
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.38 E-value=0.16 Score=55.79 Aligned_cols=89 Identities=15% Similarity=0.169 Sum_probs=72.8
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhh
Q 000487 1048 ENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINC 1127 (1463)
Q Consensus 1048 E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyC 1127 (1463)
+.++..|++-|.-|+-..+-.+....++..+.-|++|.|.++|.-..++.-+.+|...|++|+..-..-....+-+.+..
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 67888999999999988754555666899999999999999999999999999999999999876665444555565666
Q ss_pred chhhHHHHH
Q 000487 1128 NLGHGRRAL 1136 (1463)
Q Consensus 1128 NLG~~yR~L 1136 (1463)
=||-++|.+
T Consensus 170 LigeL~rrl 178 (214)
T PF09986_consen 170 LIGELNRRL 178 (214)
T ss_pred HHHHHHHHh
Confidence 777777773
No 56
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.36 E-value=0.26 Score=57.08 Aligned_cols=92 Identities=25% Similarity=0.433 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHH
Q 000487 1090 GRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYC 1169 (1463)
Q Consensus 1090 G~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~ 1169 (1463)
|.-.|+.++|.+|+..|.+||.+ |++| |..|||=.-.|..| +.|..|++- ..
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l-----~P~n-AVyycNRAAAy~~L------------------g~~~~AVkD----ce 139 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIEL-----DPTN-AVYYCNRAAAYSKL------------------GEYEDAVKD----CE 139 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc-----CCCc-chHHHHHHHHHHHh------------------cchHHHHHH----HH
Confidence 44567779999999999999965 5555 66788865555442 456677777 55
Q ss_pred HHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhcc
Q 000487 1170 ESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHE 1249 (1463)
Q Consensus 1170 kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~e 1249 (1463)
.||.| --.|+-+|.|||++|-.... |+ ++
T Consensus 140 ~Al~i--------------------------Dp~yskay~RLG~A~~~~gk----~~---------------------~A 168 (304)
T KOG0553|consen 140 SALSI--------------------------DPHYSKAYGRLGLAYLALGK----YE---------------------EA 168 (304)
T ss_pred HHHhc--------------------------ChHHHHHHHHHHHHHHccCc----HH---------------------HH
Confidence 55544 23467899999999999888 66 55
Q ss_pred ccHHHHHHHHHHHH
Q 000487 1250 VSANDAIREALSLY 1263 (1463)
Q Consensus 1250 Isa~Dai~eALkLy 1263 (1463)
| ++|+|||.|.
T Consensus 169 ~---~aykKaLeld 179 (304)
T KOG0553|consen 169 I---EAYKKALELD 179 (304)
T ss_pred H---HHHHhhhccC
Confidence 6 8888888764
No 57
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=94.27 E-value=0.16 Score=66.55 Aligned_cols=103 Identities=14% Similarity=0.045 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhc
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCN 1128 (1463)
.++..|+.+|++|+++- |. +.+++.+|.++...+++.+|+.+|.+++... ++-+.++.|
T Consensus 590 Gr~~eAl~~~~~AL~l~---P~------------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~------Pd~~~a~~n 648 (987)
T PRK09782 590 GQPELALNDLTRSLNIA---PS------------ANAYVARATIYRQRHNVPAAVSDLRAALELE------PNNSNYQAA 648 (987)
T ss_pred CCHHHHHHHHHHHHHhC---CC------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHH
Confidence 45777888888888664 21 2456777778888888888888888888662 344467778
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHH
Q 000487 1129 LGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTY 1208 (1463)
Q Consensus 1129 LG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TY 1208 (1463)
+|..+.. .+.+.+|++. |.+||+..- +.+.++
T Consensus 649 LG~aL~~------------------~G~~eeAi~~----l~~AL~l~P--------------------------~~~~a~ 680 (987)
T PRK09782 649 LGYALWD------------------SGDIAQSREM----LERAHKGLP--------------------------DDPALI 680 (987)
T ss_pred HHHHHHH------------------CCCHHHHHHH----HHHHHHhCC--------------------------CCHHHH
Confidence 8877665 3566777777 777766421 234567
Q ss_pred HHHHHhhhhccc
Q 000487 1209 LRLGMLLAREDT 1220 (1463)
Q Consensus 1209 lnLG~LLqde~~ 1220 (1463)
++||+++.....
T Consensus 681 ~nLA~al~~lGd 692 (987)
T PRK09782 681 RQLAYVNQRLDD 692 (987)
T ss_pred HHHHHHHHHCCC
Confidence 778888777777
No 58
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=94.23 E-value=0.13 Score=47.68 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=51.3
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 000487 1084 WVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALET 1163 (1463)
Q Consensus 1084 nv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ 1163 (1463)
.++..+|..++.++++.+|+..|.+++..+ .|..+..-++.++|.++.. .+.|.+|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~------------------~~~~~~A~~~ 61 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY---PKSTYAPNAHYWLGEAYYA------------------QGKYADAAKA 61 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHHHHHh------------------hccHHHHHHH
Confidence 467889999999999999999999999654 3444556666677777666 3678888888
Q ss_pred hHHHHHHHHHHH
Q 000487 1164 AKLEYCESLRYY 1175 (1463)
Q Consensus 1164 ak~eY~kAL~~y 1175 (1463)
|.++++.+
T Consensus 62 ----~~~~~~~~ 69 (119)
T TIGR02795 62 ----FLAVVKKY 69 (119)
T ss_pred ----HHHHHHHC
Confidence 88777543
No 59
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=94.16 E-value=0.29 Score=49.80 Aligned_cols=97 Identities=12% Similarity=0.086 Sum_probs=74.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHH
Q 000487 1088 EMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLE 1167 (1463)
Q Consensus 1088 ELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~e 1167 (1463)
.+|..++.+|.+.+|..+|..++.. .+.-.-.++++|.++.. .+.|.+|+..
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~------------------~g~~~~A~~~---- 80 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMA------QPWSWRAHIALAGTWMM------------------LKEYTTAINF---- 80 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHH------------------HhhHHHHHHH----
Confidence 3688888899999999999999855 23456777888888776 4788899999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhh
Q 000487 1168 YCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRK 1247 (1463)
Q Consensus 1168 Y~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK 1247 (1463)
|.+|+.. .-+.+.+++++|..|..... ++
T Consensus 81 y~~Al~l--------------------------~p~~~~a~~~lg~~l~~~g~----~~--------------------- 109 (144)
T PRK15359 81 YGHALML--------------------------DASHPEPVYQTGVCLKMMGE----PG--------------------- 109 (144)
T ss_pred HHHHHhc--------------------------CCCCcHHHHHHHHHHHHcCC----HH---------------------
Confidence 8888863 12346788999999888777 44
Q ss_pred ccccHHHHHHHHHHHHhhh
Q 000487 1248 HEVSANDAIREALSLYESM 1266 (1463)
Q Consensus 1248 ~eIsa~Dai~eALkLyEsl 1266 (1463)
+.| .+|.+|+++.-.+
T Consensus 110 eAi---~~~~~Al~~~p~~ 125 (144)
T PRK15359 110 LAR---EAFQTAIKMSYAD 125 (144)
T ss_pred HHH---HHHHHHHHhCCCC
Confidence 445 8899998877555
No 60
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=94.15 E-value=0.12 Score=55.33 Aligned_cols=107 Identities=13% Similarity=0.072 Sum_probs=73.8
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhh
Q 000487 1048 ENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINC 1127 (1463)
Q Consensus 1048 E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyC 1127 (1463)
+.....++..|+++++.- -.-+.+|..||++|+..+++++|+.+|++|++.. .+-+-+++
T Consensus 52 ~~~~~~~i~~l~~~L~~~--------------P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~------P~~~~~~~ 111 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--------------PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR------GENAELYA 111 (198)
T ss_pred chhHHHHHHHHHHHHHHC--------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHH
Confidence 445578888888888664 1224578999999999999999999999999865 23466677
Q ss_pred chhhHH-HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHH
Q 000487 1128 NLGHGR-RALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAH 1206 (1463)
Q Consensus 1128 NLG~~y-R~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~ 1206 (1463)
++|.++ .... +..+.+|.+. +.++|+.--. ...
T Consensus 112 ~lA~aL~~~~g----------------~~~~~~A~~~----l~~al~~dP~--------------------------~~~ 145 (198)
T PRK10370 112 ALATVLYYQAG----------------QHMTPQTREM----IDKALALDAN--------------------------EVT 145 (198)
T ss_pred HHHHHHHHhcC----------------CCCcHHHHHH----HHHHHHhCCC--------------------------Chh
Confidence 888753 2300 0125677777 6666653221 135
Q ss_pred HHHHHHHhhhhccc
Q 000487 1207 TYLRLGMLLAREDT 1220 (1463)
Q Consensus 1207 TYlnLG~LLqde~~ 1220 (1463)
++++||+.+.....
T Consensus 146 al~~LA~~~~~~g~ 159 (198)
T PRK10370 146 ALMLLASDAFMQAD 159 (198)
T ss_pred HHHHHHHHHHHcCC
Confidence 77888888877777
No 61
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.87 E-value=1.3 Score=53.96 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=17.9
Q ss_pred hhHHHHHHhhHh-hhhhcCChhh
Q 000487 671 HHVSQAIKSLRW-KRQLQSSEPE 692 (1463)
Q Consensus 671 ~hvsqaikslrw-~rqlq~~~~~ 692 (1463)
..+|.|||..|- -.|.+|++..
T Consensus 251 r~fskaikfyrmaldqvpsink~ 273 (840)
T KOG2003|consen 251 REFSKAIKFYRMALDQVPSINKD 273 (840)
T ss_pred hhHHHHHHHHHHHHhhccccchh
Confidence 358999999998 7899998743
No 62
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.66 E-value=1.1 Score=53.68 Aligned_cols=131 Identities=18% Similarity=0.132 Sum_probs=91.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHH
Q 000487 1089 MGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEY 1168 (1463)
Q Consensus 1089 LG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY 1168 (1463)
||+-.+-.+-|.+|+..|++|.++...++|..-=-.+++.||.++..| ..|.||+-+ -
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l------------------~D~~Kal~f----~ 185 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL------------------KDYEKALFF----P 185 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH------------------HhhhHHhhh----h
Confidence 444444456678999999999999999999999889999999998772 467788777 5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhc
Q 000487 1169 CESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKH 1248 (1463)
Q Consensus 1169 ~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~ 1248 (1463)
.+|+.+-..-. .+=|+.- .-+-.++.|+..|--...+.
T Consensus 186 ~kA~~lv~s~~--------------l~d~~~k--yr~~~lyhmaValR~~G~Lg-------------------------- 223 (518)
T KOG1941|consen 186 CKAAELVNSYG--------------LKDWSLK--YRAMSLYHMAVALRLLGRLG-------------------------- 223 (518)
T ss_pred HhHHHHHHhcC--------------cCchhHH--HHHHHHHHHHHHHHHhcccc--------------------------
Confidence 56655544332 1112222 22344566665554444422
Q ss_pred cccHHHHHHHHHHHHhhhchhhhhHHHHHHHHHhhhhhh
Q 000487 1249 EVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQRD 1287 (1463)
Q Consensus 1249 eIsa~Dai~eALkLyEslG~L~kqeAAyah~qLAs~yrd 1287 (1463)
+|.|+..||.+|.=..| ++---|.+.-.+|.+||.
T Consensus 224 --dA~e~C~Ea~klal~~G--dra~~arc~~~~aDIyR~ 258 (518)
T KOG1941|consen 224 --DAMECCEEAMKLALQHG--DRALQARCLLCFADIYRS 258 (518)
T ss_pred --cHHHHHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHh
Confidence 67799999999999998 444447778888888877
No 63
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=93.47 E-value=0.33 Score=51.36 Aligned_cols=134 Identities=11% Similarity=0.133 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhch-hhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhh
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEM-GRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINC 1127 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NEL-G~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyC 1127 (1463)
.++..|+..|+++++.. |... ......-++|+++.++ +..+.+.+.+.+|+..|.+.++.+-.-. .......
T Consensus 84 ~~~~~A~~~~~~~l~~~---p~~~-~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~a~~ 156 (235)
T TIGR03302 84 GDYAEAIAAADRFIRLH---PNHP-DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE---YAPDAKK 156 (235)
T ss_pred CCHHHHHHHHHHHHHHC---cCCC-chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh---hHHHHHH
Confidence 46888999999999775 3222 2223445556666543 3344455889999999999987644321 1222233
Q ss_pred chhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHH
Q 000487 1128 NLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHT 1207 (1463)
Q Consensus 1128 NLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~T 1207 (1463)
.++..+..+++......+.+ +.++.|.+|+.. |.++++.+... ...+.+
T Consensus 157 ~~~~~~~~~~~~~~~~a~~~----~~~g~~~~A~~~----~~~al~~~p~~-----------------------~~~~~a 205 (235)
T TIGR03302 157 RMDYLRNRLAGKELYVARFY----LKRGAYVAAINR----FETVVENYPDT-----------------------PATEEA 205 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHcCChHHHHHH----HHHHHHHCCCC-----------------------cchHHH
Confidence 33333322221110010111 112566666666 66666554332 235667
Q ss_pred HHHHHHhhhhccc
Q 000487 1208 YLRLGMLLAREDT 1220 (1463)
Q Consensus 1208 YlnLG~LLqde~~ 1220 (1463)
++++|.++-....
T Consensus 206 ~~~l~~~~~~lg~ 218 (235)
T TIGR03302 206 LARLVEAYLKLGL 218 (235)
T ss_pred HHHHHHHHHHcCC
Confidence 7888887776666
No 64
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=93.27 E-value=0.34 Score=46.73 Aligned_cols=83 Identities=8% Similarity=-0.023 Sum_probs=59.7
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 000487 1084 WVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALET 1163 (1463)
Q Consensus 1084 nv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ 1163 (1463)
++...+|..++.++++.+|...|++++..+ ++-.-.++++|..+.. ++.|.+|++.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~la~~~~~------------------~~~~~~A~~~ 73 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD------PYNSRYWLGLAACCQM------------------LKEYEEAIDA 73 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHH------------------HHHHHHHHHH
Confidence 456778888888999999999999888753 3345677788877766 3677888888
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccc
Q 000487 1164 AKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDT 1220 (1463)
Q Consensus 1164 ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ 1220 (1463)
|.++++... ....+++++|.++.....
T Consensus 74 ----~~~~~~~~p--------------------------~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 74 ----YALAAALDP--------------------------DDPRPYFHAAECLLALGE 100 (135)
T ss_pred ----HHHHHhcCC--------------------------CChHHHHHHHHHHHHcCC
Confidence 777776421 124556778887777666
No 65
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.06 E-value=0.22 Score=57.62 Aligned_cols=90 Identities=19% Similarity=0.227 Sum_probs=68.7
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhh
Q 000487 1047 AENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILIN 1126 (1463)
Q Consensus 1047 ~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiy 1126 (1463)
.+.+|..|+.+|.+|+++- |+....|- ..+-||..| ++|..|.+..++||.+ ..++.-.|
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~---P~nAVyyc----NRAAAy~~L-------g~~~~AVkDce~Al~i------Dp~yskay 152 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELD---PTNAVYYC----NRAAAYSKL-------GEYEDAVKDCESALSI------DPHYSKAY 152 (304)
T ss_pred HhhhHHHHHHHHHHHHhcC---CCcchHHH----HHHHHHHHh-------cchHHHHHHHHHHHhc------ChHHHHHH
Confidence 4678999999999999875 55554432 344454444 5677888888888854 35789999
Q ss_pred hchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000487 1127 CNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAA 1178 (1463)
Q Consensus 1127 CNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~a 1178 (1463)
+-||..|.. ++.|..|+++ |++||.+.-.-
T Consensus 153 ~RLG~A~~~------------------~gk~~~A~~a----ykKaLeldP~N 182 (304)
T KOG0553|consen 153 GRLGLAYLA------------------LGKYEEAIEA----YKKALELDPDN 182 (304)
T ss_pred HHHHHHHHc------------------cCcHHHHHHH----HHhhhccCCCc
Confidence 999999988 5789999999 99999886543
No 66
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=92.45 E-value=0.14 Score=44.29 Aligned_cols=59 Identities=20% Similarity=0.212 Sum_probs=47.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHH
Q 000487 1088 EMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLE 1167 (1463)
Q Consensus 1088 ELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~e 1167 (1463)
.+|..+++++++.+|+.+|+++++.+ .+-+.++..+|.++.. ++.|.+|++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~------P~~~~a~~~lg~~~~~------------------~g~~~~A~~~---- 53 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD------PDNPEAWYLLGRILYQ------------------QGRYDEALAY---- 53 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS------TTHHHHHHHHHHHHHH------------------TT-HHHHHHH----
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHH------------------cCCHHHHHHH----
Confidence 47889999999999999999998655 5567777777777766 4788999999
Q ss_pred HHHHHHH
Q 000487 1168 YCESLRY 1174 (1463)
Q Consensus 1168 Y~kAL~~ 1174 (1463)
|.++++.
T Consensus 54 ~~~a~~~ 60 (65)
T PF13432_consen 54 YERALEL 60 (65)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888864
No 67
>PRK14574 hmsH outer membrane protein; Provisional
Probab=92.33 E-value=2.3 Score=55.18 Aligned_cols=83 Identities=18% Similarity=0.121 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccc-hhhhhc
Q 000487 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNI-ILINCN 1128 (1463)
Q Consensus 1050 NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNi-ALiyCN 1128 (1463)
++..|+..|+++++.- |...+... .+..++...+++.+|+.++++++ |+.|. ....-.
T Consensus 49 d~~~Al~~L~qaL~~~---P~~~~av~-----------dll~l~~~~G~~~~A~~~~eka~-------~p~n~~~~~lla 107 (822)
T PRK14574 49 DTAPVLDYLQEESKAG---PLQSGQVD-----------DWLQIAGWAGRDQEVIDVYERYQ-------SSMNISSRGLAS 107 (822)
T ss_pred CHHHHHHHHHHHHhhC---ccchhhHH-----------HHHHHHHHcCCcHHHHHHHHHhc-------cCCCCCHHHHHH
Confidence 3458888888888775 44332222 44455555689999999999998 65553 222222
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 000487 1129 LGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYY 1175 (1463)
Q Consensus 1129 LG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y 1175 (1463)
+|.+|+. ++.|.+|++. |.++|+..
T Consensus 108 lA~ly~~------------------~gdyd~Aiel----y~kaL~~d 132 (822)
T PRK14574 108 AARAYRN------------------EKRWDQALAL----WQSSLKKD 132 (822)
T ss_pred HHHHHHH------------------cCCHHHHHHH----HHHHHhhC
Confidence 3334433 2678899999 88887643
No 68
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=92.15 E-value=0.29 Score=56.88 Aligned_cols=97 Identities=14% Similarity=0.211 Sum_probs=70.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHH
Q 000487 1088 EMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLE 1167 (1463)
Q Consensus 1088 ELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~e 1167 (1463)
..|.-.+.+++|.+|+.+|.+||.. |+ +-+.++.|+|..+.. .+.|..|+..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~-----~P-~~~~a~~~~a~~~~~------------------~g~~~eAl~~---- 58 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL-----DP-NNAELYADRAQANIK------------------LGNFTEAVAD---- 58 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-----CC-CCHHHHHHHHHHHHH------------------cCCHHHHHHH----
Confidence 3466677789999999999999975 22 335677788877666 3678888888
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhh
Q 000487 1168 YCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRK 1247 (1463)
Q Consensus 1168 Y~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK 1247 (1463)
|.+||++.. ..+.+|+++|.+|..... |.
T Consensus 59 ~~~Al~l~P--------------------------~~~~a~~~lg~~~~~lg~----~~--------------------- 87 (356)
T PLN03088 59 ANKAIELDP--------------------------SLAKAYLRKGTACMKLEE----YQ--------------------- 87 (356)
T ss_pred HHHHHHhCc--------------------------CCHHHHHHHHHHHHHhCC----HH---------------------
Confidence 888877532 235578999999888777 55
Q ss_pred ccccHHHHHHHHHHHHhhh
Q 000487 1248 HEVSANDAIREALSLYESM 1266 (1463)
Q Consensus 1248 ~eIsa~Dai~eALkLyEsl 1266 (1463)
+++ .+|++|+++.-.+
T Consensus 88 eA~---~~~~~al~l~P~~ 103 (356)
T PLN03088 88 TAK---AALEKGASLAPGD 103 (356)
T ss_pred HHH---HHHHHHHHhCCCC
Confidence 445 8889998876444
No 69
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.15 E-value=0.14 Score=41.14 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=28.4
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 000487 1085 VCNEMGRIRLERKEMEKGEHAFANAINAFKEVSD 1118 (1463)
Q Consensus 1085 v~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D 1118 (1463)
+++.||.+|..+++|.+|+.+|++++.+-++..|
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPED 34 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 5789999999999999999999999977666554
No 70
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.10 E-value=0.15 Score=61.77 Aligned_cols=69 Identities=13% Similarity=0.057 Sum_probs=54.9
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Q 000487 1081 KKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQA 1160 (1463)
Q Consensus 1081 KiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKA 1160 (1463)
...++|++||..++.++.|++|+.+|++||.+.- |+......|+|+|..|.. ++.+.+|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P---d~aeA~~A~yNLAcaya~------------------LGr~dEA 131 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNP---NPDEAQAAYYNKACCHAY------------------REEGKKA 131 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CchHHHHHHHHHHHHHHH------------------cCCHHHH
Confidence 4567889999999999999999999999997741 111122678999999888 4678888
Q ss_pred HHHhHHHHHHHHHH
Q 000487 1161 LETAKLEYCESLRY 1174 (1463)
Q Consensus 1161 Le~ak~eY~kAL~~ 1174 (1463)
+++ |.+||++
T Consensus 132 la~----LrrALel 141 (453)
T PLN03098 132 ADC----LRTALRD 141 (453)
T ss_pred HHH----HHHHHHh
Confidence 888 8888886
No 71
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.86 E-value=6.8 Score=50.91 Aligned_cols=302 Identities=16% Similarity=0.200 Sum_probs=166.3
Q ss_pred ccccchhhcccCCccccccceeeeccCCCCCChhhhHHHHHHHHHHHHHHhcCCCCchh-----hHHHHHHhhh--hhhh
Q 000487 1015 KVSTQVEFASRDKPKVKNGGIFKYLEDPVVGDAENNLSSALSCYEEAVKALGGLPTVSA-----ELQSVLKKKG--WVCN 1087 (1463)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~GgiFkyL~~~~~~D~E~NL~~AleCYeeALkal~~l~~~~a-----e~~svlKKiG--nv~N 1087 (1463)
++.+.+..-..=+.+.+.-..|+|-+ -+++. --.+..||+.|+.|...+.-+...|- +-..+.+.-| -||+
T Consensus 894 mL~e~p~~~e~Yv~~~~d~~L~~WWg-qYlES-~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcY 971 (1416)
T KOG3617|consen 894 MLKEYPKQIEQYVRRKRDESLYSWWG-QYLES-VGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACY 971 (1416)
T ss_pred HHHhChHHHHHHHHhccchHHHHHHH-HHHhc-ccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHH
Confidence 33333333333333444457788764 22221 23577899999999988743333332 1112333333 3899
Q ss_pred chhhHHHHHHHHHHHHHHHH------HHHHHHHhcc---Ccccchh--------------------------hhhchhhH
Q 000487 1088 EMGRIRLERKEMEKGEHAFA------NAINAFKEVS---DYTNIIL--------------------------INCNLGHG 1132 (1463)
Q Consensus 1088 ELG~~ymeq~nlkKAe~afe------kAI~aF~eV~---D~tNiAL--------------------------iyCNLG~~ 1132 (1463)
-|||.|=++|++.+|..+|- .||+++++-+ ...|+|+ +|-.-|++
T Consensus 972 hlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~ 1051 (1416)
T KOG3617|consen 972 HLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMI 1051 (1416)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcch
Confidence 99999999999999998764 5677766532 1233332 44555666
Q ss_pred HHHHHHHHHhh------------------------hhhhhhhhhhHHHHHHHHH--HhHHHHHHHHHHHHHHh-------
Q 000487 1133 RRALAEEMVSK------------------------VESLKIHTIFQNMYKQALE--TAKLEYCESLRYYRAAK------- 1179 (1463)
Q Consensus 1133 yR~LAee~~sk------------------------~~~~k~~~~~q~~YnKALe--~ak~eY~kAL~~y~~aK------- 1179 (1463)
.++|---+.+| .+.+.++ ..|.||+. ++..+|++||++-..+.
T Consensus 1052 ~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~----~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~ 1127 (1416)
T KOG3617|consen 1052 GKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENN----QQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEF 1127 (1416)
T ss_pred HHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 66654333333 1222333 67888876 46678999998876554
Q ss_pred hhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccchhh----------hhcccccccCCC-Ccccchhhhhhhc
Q 000487 1180 LQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAE----------VYETGAWEDISV-PCEGRTRKELRKH 1248 (1463)
Q Consensus 1180 ~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ls~----------~ye~~~~~~~~~-~~t~~~~eeleK~ 1248 (1463)
+|++--.. .+..+..-|-.|.-|+|....+=|.-...-..++. -.+.|-.+++++ -|+-+. .
T Consensus 1128 aE~mTp~K-d~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRq------k 1200 (1416)
T KOG3617|consen 1128 AELMTPTK-DDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQ------K 1200 (1416)
T ss_pred HHhcCcCc-CCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeecccc------c
Confidence 12222222 26677778888888888776665543322211110 023355555544 444321 1
Q ss_pred cccHHHHHHHHHHHHhhhc----h------hhhhHHHHHHHHHhhhhhhHHHHhhhcccccCCCCCCchhHHHHHHHhhh
Q 000487 1249 EVSANDAIREALSLYESMG----D------LRKQEAAYAYFQLACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYAS 1318 (1463)
Q Consensus 1249 eIsa~Dai~eALkLyEslG----~------L~kqeAAyah~qLAs~yrd~cLr~Le~d~k~e~~~K~~~~~iq~ak~y~s 1318 (1463)
+| |--|-.+++.+- | .--|--+.+...||.+|..|-. .| +.+|.+
T Consensus 1201 Ei-----YImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAq--iE------------------iee~q~ 1255 (1416)
T KOG3617|consen 1201 EI-----YIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQ--IE------------------IEELQT 1255 (1416)
T ss_pred ee-----eeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHH--hh------------------HHHHhh
Confidence 23 111222333321 0 0112225567789999988811 12 234444
Q ss_pred HHHHH--HHHHHhhhCCCC---CchhHHHHHhhccchhhhh
Q 000487 1319 LAERN--WQKAMDFYGPRS---HPTMYLTILMERSDLSFRL 1354 (1463)
Q Consensus 1319 LAe~n--yqKAle~Y~p~~---hp~~~L~IlmERsAL~~~~ 1354 (1463)
..+.+ -++|.++..+++ |.+--|.-|-++.|++-.+
T Consensus 1256 ydKa~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~ 1296 (1416)
T KOG3617|consen 1256 YDKAMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQ 1296 (1416)
T ss_pred hhHHhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 43333 666777776654 8877788888888887665
No 72
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=90.49 E-value=0.32 Score=42.16 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINA 1112 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~a 1112 (1463)
.++..|+++|+++++.. -.-.+++..||.+++.++++.+|+.+|+++++.
T Consensus 11 g~~~~A~~~~~~~l~~~--------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 11 GDYDEAIAAFEQALKQD--------------PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp THHHHHHHHHHHHHCCS--------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 47889999999999553 235788899999999999999999999999965
No 73
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.24 E-value=0.27 Score=38.00 Aligned_cols=31 Identities=10% Similarity=0.127 Sum_probs=27.3
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 000487 1083 GWVCNEMGRIRLERKEMEKGEHAFANAINAF 1113 (1463)
Q Consensus 1083 Gnv~NELG~~ymeq~nlkKAe~afekAI~aF 1113 (1463)
+.+|+.+|..++.++++.+|+.+|.+||++.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 3578999999999999999999999999864
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=90.17 E-value=0.49 Score=52.70 Aligned_cols=84 Identities=12% Similarity=0.073 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhch
Q 000487 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNL 1129 (1463)
Q Consensus 1050 NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNL 1129 (1463)
++..|++.|+++++.- |.. .++++.||.++++++++++|+.+|.+++..... +..-.+.++.++
T Consensus 129 ~~~~A~~~~~~al~~~---p~~-----------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~l 192 (355)
T cd05804 129 QYDRAEEAARRALELN---PDD-----------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHL 192 (355)
T ss_pred CHHHHHHHHHHHHhhC---CCC-----------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHH
Confidence 4677888888888764 221 789999999999999999999999999987654 222234455666
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHH
Q 000487 1130 GHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCES 1171 (1463)
Q Consensus 1130 G~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kA 1171 (1463)
|.++.. ++.|.+|++. |.++
T Consensus 193 a~~~~~------------------~G~~~~A~~~----~~~~ 212 (355)
T cd05804 193 ALFYLE------------------RGDYEAALAI----YDTH 212 (355)
T ss_pred HHHHHH------------------CCCHHHHHHH----HHHH
Confidence 666555 3677777777 6666
No 75
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.23 E-value=0.32 Score=37.06 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=27.0
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000487 1084 WVCNEMGRIRLERKEMEKGEHAFANAINAFK 1114 (1463)
Q Consensus 1084 nv~NELG~~ymeq~nlkKAe~afekAI~aF~ 1114 (1463)
.++..||.++++++++++|+.+|.+|+.++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4788999999999999999999999998753
No 76
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.04 E-value=0.45 Score=58.80 Aligned_cols=84 Identities=19% Similarity=0.224 Sum_probs=63.4
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHH
Q 000487 1083 GWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALE 1162 (1463)
Q Consensus 1083 Gnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe 1162 (1463)
..|..-||++|.-.++|++|++||+.||. +.+|=.++.+-||-..-+ . ..+-.|++
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~------v~Pnd~~lWNRLGAtLAN---~---------------~~s~EAIs 485 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQ------VKPNDYLLWNRLGATLAN---G---------------NRSEEAIS 485 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHh------cCCchHHHHHHhhHHhcC---C---------------cccHHHHH
Confidence 46778899999999999999999999994 567777888888877443 1 35668999
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHH
Q 000487 1163 TAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGM 1213 (1463)
Q Consensus 1163 ~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~ 1213 (1463)
+ |+|||++.=.- --|.-.++..|.|||+
T Consensus 486 A----Y~rALqLqP~y-------------------VR~RyNlgIS~mNlG~ 513 (579)
T KOG1125|consen 486 A----YNRALQLQPGY-------------------VRVRYNLGISCMNLGA 513 (579)
T ss_pred H----HHHHHhcCCCe-------------------eeeehhhhhhhhhhhh
Confidence 9 99999864221 1245567777888775
No 77
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=89.01 E-value=7.5 Score=49.73 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCccc--chhhhhch
Q 000487 1052 SSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTN--IILINCNL 1129 (1463)
Q Consensus 1052 ~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tN--iALiyCNL 1129 (1463)
..|+++|+.+++.....|.....+.... ...||.+ +.++++++|+..|++.++....+.+..- ++.+|..+
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~------~d~l~~L-l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~ 285 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRAR------IDRLGAL-LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKL 285 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHH------HHHHHHH-HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc
Confidence 7799999999977522221111111111 1225555 5668899999999987765322222111 45555555
Q ss_pred hhHHHH
Q 000487 1130 GHGRRA 1135 (1463)
Q Consensus 1130 G~~yR~ 1135 (1463)
|..-.+
T Consensus 286 g~~e~A 291 (765)
T PRK10049 286 HQPEKA 291 (765)
T ss_pred CCcHHH
Confidence 554444
No 78
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.73 E-value=19 Score=40.74 Aligned_cols=86 Identities=17% Similarity=0.138 Sum_probs=65.2
Q ss_pred ChhhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHH-HHHHHHHHHHHHHHHHHh----ccCcc
Q 000487 1046 DAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERK-EMEKGEHAFANAINAFKE----VSDYT 1120 (1463)
Q Consensus 1046 D~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~-nlkKAe~afekAI~aF~e----V~D~t 1120 (1463)
..|.++..|.+||.+|..... .-.....+.++.+|.++|.-.+.++ .+..|...+.+|.+++.+ ..+++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~------~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~ 77 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN------SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSP 77 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh------cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCC
Confidence 457889999999999998761 1233455799999999999999999 999999999999999866 23444
Q ss_pred cchhhhhchhhHHHHHHHHH
Q 000487 1121 NIILINCNLGHGRRALAEEM 1140 (1463)
Q Consensus 1121 NiALiyCNLG~~yR~LAee~ 1140 (1463)
+..-+ -..++|++|...
T Consensus 78 ~~~el---r~~iL~~La~~~ 94 (278)
T PF08631_consen 78 DGSEL---RLSILRLLANAY 94 (278)
T ss_pred cHHHH---HHHHHHHHHHHH
Confidence 44333 235666677644
No 79
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.62 E-value=5.4 Score=44.03 Aligned_cols=76 Identities=20% Similarity=0.095 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHH---HHHHHHHHHHHHHHHHHHHHhccCcccchhhhhc
Q 000487 1052 SSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRL---ERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1463)
Q Consensus 1052 ~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ym---eq~nlkKAe~afekAI~aF~eV~D~tNiALiyCN 1128 (1463)
..|.+-|+++... ...-...+-+-|-|.-||+.+.- ..+.+..|+.-|+.||.+ .+|..-.++|
T Consensus 8 E~ark~aea~y~~-------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I------~P~~hdAlw~ 74 (186)
T PF06552_consen 8 EHARKKAEAAYAK-------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI------NPNKHDALWC 74 (186)
T ss_dssp HHHHHHHHHHHHH--------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-------TT-HHHHHH
T ss_pred HHHHHHHHHHHHh-------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc------CCchHHHHHH
Confidence 3466666665543 12335688899999999998843 236777777777777766 4567788999
Q ss_pred hhhHHHHHHHHH
Q 000487 1129 LGHGRRALAEEM 1140 (1463)
Q Consensus 1129 LG~~yR~LAee~ 1140 (1463)
||..|..+|...
T Consensus 75 lGnA~ts~A~l~ 86 (186)
T PF06552_consen 75 LGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHhhc
Confidence 999999988733
No 80
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=88.20 E-value=1.8 Score=39.72 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHH
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFAN 1108 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afek 1108 (1463)
.++..|+..|+++++.. |+.+ -..++..||.+++.++++++|+.++.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~---~~~~---------~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELD---PTNP---------NSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHH---CGTH---------HHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHC---CCCh---------hHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 46889999999999876 2210 122455588899999999998888887
No 81
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.94 E-value=12 Score=43.16 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhhchhhhhHHHHHHHHHhhhhhh
Q 000487 1254 DAIREALSLYESMGDLRKQEAAYAYFQLACYQRD 1287 (1463)
Q Consensus 1254 Dai~eALkLyEslG~L~kqeAAyah~qLAs~yrd 1287 (1463)
+.+++|+.+|.-.| |-.+||.-|+-||-+|-.
T Consensus 94 ~cL~~aieIyt~~G--rf~~aAk~~~~iaEiyEs 125 (288)
T KOG1586|consen 94 NCLEKAIEIYTDMG--RFTMAAKHHIEIAEIYES 125 (288)
T ss_pred HHHHHHHHHHHhhh--HHHHHHhhhhhHHHHHhh
Confidence 77777777777777 666677777777766654
No 82
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.45 E-value=0.52 Score=37.01 Aligned_cols=34 Identities=9% Similarity=0.100 Sum_probs=28.1
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000487 1083 GWVCNEMGRIRLERKEMEKGEHAFANAINAFKEV 1116 (1463)
Q Consensus 1083 Gnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV 1116 (1463)
+.++|.||..|..++++.+|+.++++++.+.+++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999987
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.85 E-value=2 Score=48.96 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=75.7
Q ss_pred HHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHH
Q 000487 1076 QSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQN 1155 (1463)
Q Consensus 1076 ~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~ 1155 (1463)
+......+.++-+||.-||+++++..|.+-++|||..- .|..+.+.-+.++|..+++..... +
T Consensus 28 ~~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~D------Ps~~~a~~~~A~~Yq~~Ge~~~A~-----------e 90 (250)
T COG3063 28 QTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHD------PSYYLAHLVRAHYYQKLGENDLAD-----------E 90 (250)
T ss_pred cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHcCChhhHH-----------H
Confidence 56677789999999999999999999999999999753 366777777777777755522211 2
Q ss_pred HHHHH----------------HHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhcc
Q 000487 1156 MYKQA----------------LETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLARED 1219 (1463)
Q Consensus 1156 ~YnKA----------------Le~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~ 1219 (1463)
.|-|| +=|+..+|.+|.+++..+- .+.. +-+-+.||-|+|-.--+..
T Consensus 91 ~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al---------~~P~--------Y~~~s~t~eN~G~Cal~~g 153 (250)
T COG3063 91 SYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERAL---------ADPA--------YGEPSDTLENLGLCALKAG 153 (250)
T ss_pred HHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHH---------hCCC--------CCCcchhhhhhHHHHhhcC
Confidence 33333 3355566777777777664 1222 4455667777776655555
Q ss_pred c
Q 000487 1220 T 1220 (1463)
Q Consensus 1220 ~ 1220 (1463)
.
T Consensus 154 q 154 (250)
T COG3063 154 Q 154 (250)
T ss_pred C
Confidence 4
No 84
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=86.82 E-value=0.97 Score=51.20 Aligned_cols=91 Identities=12% Similarity=0.194 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhc
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCN 1128 (1463)
.++..|+..|+..++.. |.. ....+++..||..|+.++++++|..+|.+.++-|- |+.-..-.+-+
T Consensus 157 ~~y~~Ai~af~~fl~~y---P~s--------~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---~s~~~~dAl~k 222 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKY---PDS--------TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---KSPKAADAMFK 222 (263)
T ss_pred CCHHHHHHHHHHHHHHC---cCC--------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCcchhHHHHH
Confidence 35567777777777654 221 12356778999999999999999999999987774 44556666677
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 000487 1129 LGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYY 1175 (1463)
Q Consensus 1129 LG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y 1175 (1463)
+|.+|.. .+.+.+|.++ |.+.++-|
T Consensus 223 lg~~~~~------------------~g~~~~A~~~----~~~vi~~y 247 (263)
T PRK10803 223 VGVIMQD------------------KGDTAKAKAV----YQQVIKKY 247 (263)
T ss_pred HHHHHHH------------------cCCHHHHHHH----HHHHHHHC
Confidence 7777654 2566677777 77777655
No 85
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.70 E-value=0.55 Score=36.09 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=28.6
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000487 1083 GWVCNEMGRIRLERKEMEKGEHAFANAINAFK 1114 (1463)
Q Consensus 1083 Gnv~NELG~~ymeq~nlkKAe~afekAI~aF~ 1114 (1463)
+++|..+|.+|...+++++|+.+|++++++..
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 36899999999999999999999999998754
No 86
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.45 E-value=3.6 Score=50.87 Aligned_cols=40 Identities=13% Similarity=0.035 Sum_probs=35.3
Q ss_pred HHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000487 1078 VLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVS 1117 (1463)
Q Consensus 1078 vlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~ 1117 (1463)
-++.++-+.+--|.|++=.+++..|..-|.++|..+....
T Consensus 321 ~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~ 360 (606)
T KOG0547|consen 321 ELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN 360 (606)
T ss_pred hHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc
Confidence 4488999999999999999999999999999998876543
No 87
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.05 E-value=0.98 Score=34.90 Aligned_cols=31 Identities=29% Similarity=0.299 Sum_probs=25.0
Q ss_pred hhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 000487 1123 ILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYY 1175 (1463)
Q Consensus 1123 ALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y 1175 (1463)
|.+++|+|..+.. ++.|.+|+++ |++||++.
T Consensus 1 a~~~~~~g~~~~~------------------~~~~~~A~~~----~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQ------------------LGDYEEALEY----YQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHH------------------TT-HHHHHHH----HHHHHHHS
T ss_pred CHHHHHHHHHHHH------------------hCCchHHHHH----HHHHHHHC
Confidence 4578889998888 4789999999 99999863
No 88
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=84.68 E-value=2.1 Score=41.04 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=45.6
Q ss_pred HhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHH
Q 000487 1080 KKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRR 1134 (1463)
Q Consensus 1080 KKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR 1134 (1463)
.....+.-.++.+....|++.+|..++++||++.++.+|..-++.++..+-++++
T Consensus 38 ~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~l~~ 92 (94)
T PF12862_consen 38 SGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLANLLK 92 (94)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhh
Confidence 3455666678888888899999999999999999999999998877776666543
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=83.60 E-value=6.8 Score=51.72 Aligned_cols=168 Identities=15% Similarity=0.142 Sum_probs=103.4
Q ss_pred cceeeeccCCCCCChhhhHHHHHHHHHHHHHH--------------hcCCCCchhhHH--------HHHHhhhhhhhchh
Q 000487 1033 GGIFKYLEDPVVGDAENNLSSALSCYEEAVKA--------------LGGLPTVSAELQ--------SVLKKKGWVCNEMG 1090 (1463)
Q Consensus 1033 GgiFkyL~~~~~~D~E~NL~~AleCYeeALka--------------l~~l~~~~ae~~--------svlKKiGnv~NELG 1090 (1463)
|.-|-||+ ....|.. ....|-+||.+|.++ +...+...+-.. +-....-|.|--.|
T Consensus 492 apaf~~LG-~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 492 APAFAFLG-QIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRG 569 (1238)
T ss_pred hHHHHHHH-HHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcc
Confidence 34456664 3455665 667777777777644 111111111000 01122233444499
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHH-HHHhh----hhhhhhhhhhHHHHHHHHHHhH
Q 000487 1091 RIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAE-EMVSK----VESLKIHTIFQNMYKQALETAK 1165 (1463)
Q Consensus 1091 ~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAe-e~~sk----~~~~k~~~~~q~~YnKALe~ak 1165 (1463)
..|++-+++.+|+..|..|+++- .+| -.+.-.||-.|-.++. +..-+ .-.+..-..+-.++.-+++++-
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~d--PkD----~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTD--PKD----YNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCC--chh----HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence 99999999999999999999652 122 2333457777766655 11111 1111111122245556788999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccc
Q 000487 1166 LEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDT 1220 (1463)
Q Consensus 1166 ~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ 1220 (1463)
.+|.+||..|+..= ---++|-.++-.+|.+|.|++-.+.....
T Consensus 644 GkYkeald~l~~ii------------~~~s~e~~~q~gLaE~~ir~akd~~~~gf 686 (1238)
T KOG1127|consen 644 GKYKEALDALGLII------------YAFSLERTGQNGLAESVIRDAKDSAITGF 686 (1238)
T ss_pred hhHHHHHHHHHHHH------------HHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999998764 22346888899999999999999988887
No 90
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=83.54 E-value=5.2 Score=38.39 Aligned_cols=81 Identities=27% Similarity=0.346 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccchhhhhcccccccC
Q 000487 1154 QNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDI 1233 (1463)
Q Consensus 1154 q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~ 1233 (1463)
.+.|..|++. ..+..++-.... .. .-.+.++.+.+++|.+....+. ++
T Consensus 11 ~~dy~~A~d~----L~~~fD~~~~~~------------~~-----~~~~~~~~all~lA~~~~~~G~----~~------- 58 (94)
T PF12862_consen 11 SGDYSEALDA----LHRYFDYAKQSN------------NS-----SSNSGLAYALLNLAELHRRFGH----YE------- 58 (94)
T ss_pred cCCHHHHHHH----HHHHHHHHhhcc------------cc-----hhhHHHHHHHHHHHHHHHHhCC----HH-------
Confidence 3688999999 777777755554 10 0156788889999999999988 44
Q ss_pred CCCcccchhhhhhhccccHHHHHHHHHHHHhhhchhhhhHHHHHHHHHhhhh
Q 000487 1234 SVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQ 1285 (1463)
Q Consensus 1234 ~~~~t~~~~eeleK~eIsa~Dai~eALkLyEslG~L~kqeAAyah~qLAs~y 1285 (1463)
+++ ++++||+.+.+..| +....++|..-|+.+.
T Consensus 59 --------------~A~---~~l~eAi~~Are~~--D~~~l~~al~~~~~l~ 91 (94)
T PF12862_consen 59 --------------EAL---QALEEAIRLARENG--DRRCLAYALSWLANLL 91 (94)
T ss_pred --------------HHH---HHHHHHHHHHHHHC--CHHHHHHHHHHHHHHh
Confidence 445 99999999999999 7777777777766443
No 91
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=83.35 E-value=1.3 Score=35.62 Aligned_cols=29 Identities=34% Similarity=0.391 Sum_probs=23.4
Q ss_pred hhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 000487 1125 INCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYY 1175 (1463)
Q Consensus 1125 iyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y 1175 (1463)
.++|||++|+. ++.|.+|+++ |++||.+-
T Consensus 1 al~~Lg~~~~~------------------~g~~~~Ai~~----y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQ------------------QGDYEKAIEY----YEQALALA 29 (36)
T ss_dssp HHHHHHHHHHH------------------CT-HHHHHHH----HHHHHHHH
T ss_pred CHHHHHHHHHH------------------cCCHHHHHHH----HHHHHHhc
Confidence 36789999888 5899999999 99998554
No 92
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=83.20 E-value=11 Score=41.49 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=2.6
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhh
Q 000487 1086 CNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGH 1131 (1463)
Q Consensus 1086 ~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~ 1131 (1463)
+..|+.+ +..+++++|+..++++.+.+....-...++-++-+.|.
T Consensus 81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 125 (280)
T PF13429_consen 81 YERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGD 125 (280)
T ss_dssp --------------------------------------H-HHHTT-
T ss_pred ccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhH
Confidence 4455555 45677777777776665544333222224444444443
No 93
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=82.92 E-value=2.1 Score=46.09 Aligned_cols=89 Identities=16% Similarity=0.194 Sum_probs=63.8
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHH-HHHHH--HHHHHHHHHHHHHHHHhccCcccchh
Q 000487 1048 ENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIR-LERKE--MEKGEHAFANAINAFKEVSDYTNIIL 1124 (1463)
Q Consensus 1048 E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~y-meq~n--lkKAe~afekAI~aF~eV~D~tNiAL 1124 (1463)
..++..|+.+|++|++.- | .-..++..+|.+. +..+. ..+|...|.++++. |+.| ..
T Consensus 86 ~g~~~~A~~a~~~Al~l~---P-----------~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~-----dP~~-~~ 145 (198)
T PRK10370 86 RNDYDNALLAYRQALQLR---G-----------ENAELYAALATVLYYQAGQHMTPQTREMIDKALAL-----DANE-VT 145 (198)
T ss_pred CCCHHHHHHHHHHHHHhC---C-----------CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-----CCCC-hh
Confidence 357789999999999775 1 2345566677653 44455 58999999999864 3333 44
Q ss_pred hhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000487 1125 INCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAA 1178 (1463)
Q Consensus 1125 iyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~a 1178 (1463)
.+.+||..+.. ++.|.+|+.+ |.++|+.....
T Consensus 146 al~~LA~~~~~------------------~g~~~~Ai~~----~~~aL~l~~~~ 177 (198)
T PRK10370 146 ALMLLASDAFM------------------QADYAQAIEL----WQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHHHH------------------cCCHHHHHHH----HHHHHhhCCCC
Confidence 66777777655 4789999999 99998876654
No 94
>KOG1982 consensus Nuclear 5'-3' exoribonuclease-interacting protein, Rai1p [Replication, recombination and repair]
Probab=82.27 E-value=42 Score=40.60 Aligned_cols=129 Identities=18% Similarity=0.258 Sum_probs=87.8
Q ss_pred CCCcceEEeeeecccceeccccccc-ccCC------CceeEEEeeccc-ccccC-----chhhHHHHHHhhhcCCCcEEE
Q 000487 305 NDGFLRVLFWQFHNFRMLLGSDLLL-FSNE------KYVAVSLHLWDV-ARQVT-----PLTWLEAWLDNVMASVPELAI 371 (1463)
Q Consensus 305 ~~~F~R~l~WtF~di~MLVGSDmPI-Fg~~------~~paVSLrLrD~-skpin-----~lTgLD~WLDNlM~NVPElam 371 (1463)
..+|-.++.=.+++.++|.|.-+-. |..+ ++--|-|+-+-+ ..|.. -...++.||--.+.+||.+++
T Consensus 192 ~~ef~~V~r~~l~~~~~l~~~evdc~~~~~~~~~~~~~~~VELKts~~~~~~~~~~~~er~K~~KwW~QsFL~Gi~~Iii 271 (359)
T KOG1982|consen 192 NEEFCSVVRTRLGGSILLFGAEVDCIDYSGPNDFDKRGNYVELKTSYKEMGPSQVDKFERLKLLKWWLQSFLVGIPRIII 271 (359)
T ss_pred cceeeeeeeeccCCceEecccceeeeccCCCcChhhcCceEEEEeehhhcCccccchhhhhHHHHHHHHHHhcCCCeEEE
Confidence 4678888888888888888876533 3331 123566775531 12221 136789999999999999999
Q ss_pred EEe-eccceeceeeecccccccccCCCCCCCCCcChHHHHHhHHHHHHHHhhhccCCCceEEEEeeCCCC
Q 000487 372 CYH-ENGVVQGYELLKTDDIFLLKGVSDDGTPAFHPHVVQQSGLSVLRFLQENCKQDPGAYWLYKSAGED 440 (1463)
Q Consensus 372 CyH-~nGiVQ~YElikTeDIp~leg~s~~g~~~F~P~vV~~~A~nvL~FLksnCtkdG~TYwL~k~~~ed 440 (1463)
=+. .||-|++..-+++.|||... ..++|.+.-...-.||+|+..-=.+++---.+|....+.
T Consensus 272 G~Rddng~v~~i~~~~v~~l~k~~-------~kW~~~~~~~~l~~~l~~i~~~l~~~~d~~~v~~~~f~~ 334 (359)
T KOG1982|consen 272 GFRDDNGHVEEIDTIEVRDLPKNK-------FKWNPSVCLNFLFTILSWILKTLPADDDPCLVFLFSFEG 334 (359)
T ss_pred EEecCCCceeeeeeeehhhccccC-------CCCCHHHHHHHHHHHHHHHHHhcccCCCceEEEEeeccC
Confidence 776 46767766666666666443 249999999999999999988777766434444444333
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=82.23 E-value=2 Score=47.91 Aligned_cols=87 Identities=10% Similarity=0.096 Sum_probs=55.4
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 000487 1084 WVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALET 1163 (1463)
Q Consensus 1084 nv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ 1163 (1463)
++..-+|.+++.+|.+..|+..|++++..... .+.++.++|+++.. .+.+.+|+++
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~------~~~~~~~la~i~~~------------------~g~~~eA~~~ 170 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPD------DAWAVHAVAHVLEM------------------QGRFKEGIAF 170 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CcHHHHHHHHHHHH------------------cCCHHHHHHH
Confidence 34445666777778888888888888875322 25556667777655 3677777777
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccc
Q 000487 1164 AKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDT 1220 (1463)
Q Consensus 1164 ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ 1220 (1463)
|.++++..... .....+.|+.+|.++.....
T Consensus 171 ----l~~~l~~~~~~----------------------~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 171 ----MESWRDTWDCS----------------------SMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred ----HHhhhhccCCC----------------------cchhHHHHHHHHHHHHHCCC
Confidence 77766543210 12234567777777777666
No 96
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=82.14 E-value=19 Score=43.79 Aligned_cols=122 Identities=17% Similarity=0.186 Sum_probs=67.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccchhhhhcccccccCC
Q 000487 1155 NMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDIS 1234 (1463)
Q Consensus 1155 ~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~ 1234 (1463)
+.|..|... |.+|+.+++-.. +.++.==..+..-.-.+|+||++.+..... |.
T Consensus 222 gk~~~A~~~----Yerav~~l~~~~-----------~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~----~~-------- 274 (397)
T KOG0543|consen 222 GKFKLAKKR----YERAVSFLEYRR-----------SFDEEEQKKAEALKLACHLNLAACYLKLKE----YK-------- 274 (397)
T ss_pred chHHHHHHH----HHHHHHHhhccc-----------cCCHHHHHHHHHHHHHHhhHHHHHHHhhhh----HH--------
Confidence 788888888 999999998554 111111111344455677888887776666 55
Q ss_pred CCcccchhhhhhhccccHHHHHHHHHHHHhhhc--hhhhhHHHHHHHHHhhhh--hhHHHHhhhcccccCCCCCCchhHH
Q 000487 1235 VPCEGRTRKELRKHEVSANDAIREALSLYESMG--DLRKQEAAYAYFQLACYQ--RDCFLKFLESDHKKNNLPKGENSFV 1310 (1463)
Q Consensus 1235 ~~~t~~~~eeleK~eIsa~Dai~eALkLyEslG--~L~kqeAAyah~qLAs~y--rd~cLr~Le~d~k~e~~~K~~~~~i 1310 (1463)
.|++.+.++++-+- .=-=||-+.||-.++-|. ++-+.++++.+.. + .-+
T Consensus 275 -------------------~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~------N--ka~ 327 (397)
T KOG0543|consen 275 -------------------EAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS------N--KAA 327 (397)
T ss_pred -------------------HHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC------c--HHH
Confidence 34444444444331 100122355665555444 3366777777742 2 123
Q ss_pred HHHHHhhhHHHHH---HHHHHhhhC
Q 000487 1311 HRVRQYASLAERN---WQKAMDFYG 1332 (1463)
Q Consensus 1311 q~ak~y~sLAe~n---yqKAle~Y~ 1332 (1463)
..++..|.+++ ++|.-++|.
T Consensus 328 --~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 328 --RAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHH
Confidence 24555555444 666666664
No 97
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=81.39 E-value=3.2 Score=36.51 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=44.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHH
Q 000487 1089 MGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEY 1168 (1463)
Q Consensus 1089 LG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY 1168 (1463)
|..+|+.+++|.+|+.+++.+|..+-. -...+.+.|.++.. .+.|.+|++. +
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~------------------~g~~~~A~~~----l 52 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPD------DPELWLQRARCLFQ------------------LGRYEEALED----L 52 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcc------cchhhHHHHHHHHH------------------hccHHHHHHH----H
Confidence 467889999999999999999988332 45555566666655 4788888888 8
Q ss_pred HHHHHHH
Q 000487 1169 CESLRYY 1175 (1463)
Q Consensus 1169 ~kAL~~y 1175 (1463)
.++|+.-
T Consensus 53 ~~~l~~~ 59 (73)
T PF13371_consen 53 ERALELS 59 (73)
T ss_pred HHHHHHC
Confidence 8888543
No 98
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=81.22 E-value=2.2 Score=48.51 Aligned_cols=85 Identities=22% Similarity=0.182 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhh
Q 000487 1052 SSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGH 1131 (1463)
Q Consensus 1052 ~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~ 1131 (1463)
..|-+-|++|+ ++..+-|.|.|+-|.|.-.||.+..|...|++|+. --++.-.+..+-|+|-
T Consensus 86 ~~A~e~YrkAl--------------sl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~----~P~Y~~~s~t~eN~G~ 147 (250)
T COG3063 86 DLADESYRKAL--------------SLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA----DPAYGEPSDTLENLGL 147 (250)
T ss_pred hhHHHHHHHHH--------------hcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh----CCCCCCcchhhhhhHH
Confidence 46778888888 44567899999999999999999999999999983 2344447778888886
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 000487 1132 GRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYR 1176 (1463)
Q Consensus 1132 ~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~ 1176 (1463)
.--. ++...+|-++ |++||++..
T Consensus 148 Cal~------------------~gq~~~A~~~----l~raL~~dp 170 (250)
T COG3063 148 CALK------------------AGQFDQAEEY----LKRALELDP 170 (250)
T ss_pred HHhh------------------cCCchhHHHH----HHHHHHhCc
Confidence 5221 2455566666 777766543
No 99
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.10 E-value=1.7 Score=29.85 Aligned_cols=30 Identities=10% Similarity=0.129 Sum_probs=27.0
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 000487 1084 WVCNEMGRIRLERKEMEKGEHAFANAINAF 1113 (1463)
Q Consensus 1084 nv~NELG~~ymeq~nlkKAe~afekAI~aF 1113 (1463)
.+++.+|..++..+++.+|..+|..+|+..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 578899999999999999999999999754
No 100
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=79.93 E-value=11 Score=40.63 Aligned_cols=63 Identities=17% Similarity=0.076 Sum_probs=48.9
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 000487 1084 WVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALET 1163 (1463)
Q Consensus 1084 nv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ 1163 (1463)
..-..+|...+++|+++.|+.+|.-.... |+ +.+.-+.|||-+++. ++.|.+|+++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~-----Dp-~~~~y~~gLG~~~Q~------------------~g~~~~AI~a 91 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIY-----DA-WSFDYWFRLGECCQA------------------QKHWGEAIYA 91 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----Cc-ccHHHHHHHHHHHHH------------------HhhHHHHHHH
Confidence 34467788888899999999998877644 44 346667899999988 5788899999
Q ss_pred hHHHHHHHHHH
Q 000487 1164 AKLEYCESLRY 1174 (1463)
Q Consensus 1164 ak~eY~kAL~~ 1174 (1463)
|.+|+.+
T Consensus 92 ----Y~~A~~L 98 (157)
T PRK15363 92 ----YGRAAQI 98 (157)
T ss_pred ----HHHHHhc
Confidence 8888754
No 101
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=79.84 E-value=2.7 Score=42.44 Aligned_cols=85 Identities=21% Similarity=0.226 Sum_probs=53.7
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhh
Q 000487 1048 ENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINC 1127 (1463)
Q Consensus 1048 E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyC 1127 (1463)
..++..|++.|+.++.-- ....++ ..+...|+++++.++.+++|+..+.. +.+..=-...+-
T Consensus 61 ~g~~~~A~~~l~~~~~~~---------~d~~l~--~~a~l~LA~~~~~~~~~d~Al~~L~~-------~~~~~~~~~~~~ 122 (145)
T PF09976_consen 61 QGDYDEAKAALEKALANA---------PDPELK--PLARLRLARILLQQGQYDEALATLQQ-------IPDEAFKALAAE 122 (145)
T ss_pred CCCHHHHHHHHHHHHhhC---------CCHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHh-------ccCcchHHHHHH
Confidence 356777888888877542 001112 22344688888888888887777744 434333344444
Q ss_pred chhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHH
Q 000487 1128 NLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESL 1172 (1463)
Q Consensus 1128 NLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL 1172 (1463)
-+|.+|.. +|.+.+|.+. |++||
T Consensus 123 ~~Gdi~~~------------------~g~~~~A~~~----y~~Al 145 (145)
T PF09976_consen 123 LLGDIYLA------------------QGDYDEARAA----YQKAL 145 (145)
T ss_pred HHHHHHHH------------------CCCHHHHHHH----HHHhC
Confidence 56666666 4788899888 98885
No 102
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.60 E-value=72 Score=39.48 Aligned_cols=87 Identities=15% Similarity=0.107 Sum_probs=62.7
Q ss_pred CCChhhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCccc--
Q 000487 1044 VGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTN-- 1121 (1463)
Q Consensus 1044 ~~D~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tN-- 1121 (1463)
..+.|.|-.+|..--++-..-+ + ...-+.++.-+--+.+.||-+|+..|.+..|+++|.++-..++..+.-.|
T Consensus 116 ~~WvE~~~~~a~~~le~L~~eL-k----~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ 190 (466)
T KOG0686|consen 116 EKWVETNNKKAVLKLEKLDNEL-K----SYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMC 190 (466)
T ss_pred hHHHHHhhHHHHHHHHHHHHHH-H----HhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHH
Confidence 4568888888877776665544 1 22444566666778999999999999999999999998777776665444
Q ss_pred -----chhhhhchhhHHHH
Q 000487 1122 -----IILINCNLGHGRRA 1135 (1463)
Q Consensus 1122 -----iALiyCNLG~~yR~ 1135 (1463)
|++.-.|-||+...
T Consensus 191 ln~i~VSI~~~nw~hv~sy 209 (466)
T KOG0686|consen 191 LNLILVSIYMGNWGHVLSY 209 (466)
T ss_pred HHHHHHHHhhcchhhhhhH
Confidence 33444567777655
No 103
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.02 E-value=36 Score=42.75 Aligned_cols=83 Identities=12% Similarity=0.252 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhc
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCN 1128 (1463)
.++..|+.=|++|..+- ---..++--|+...+.+.-+..+++.|+++++-|- |..
T Consensus 408 ~q~e~A~aDF~Kai~L~--------------pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP------~~~----- 462 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLD--------------PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP------NCP----- 462 (606)
T ss_pred HHHHHHHHHHHHHhhcC--------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCc-----
Confidence 34555666666665432 12234455566666667777888888888877663 333
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 000487 1129 LGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLR 1173 (1463)
Q Consensus 1129 LG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~ 1173 (1463)
-+|.+.||..-.| +.|.+|++. |.+|++
T Consensus 463 --Evy~~fAeiLtDq-----------qqFd~A~k~----YD~ai~ 490 (606)
T KOG0547|consen 463 --EVYNLFAEILTDQ-----------QQFDKAVKQ----YDKAIE 490 (606)
T ss_pred --hHHHHHHHHHhhH-----------HhHHHHHHH----HHHHHh
Confidence 4555666666555 455556655 555554
No 104
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.55 E-value=16 Score=40.55 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=39.5
Q ss_pred ChhhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 000487 1046 DAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKE 1115 (1463)
Q Consensus 1046 D~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~e 1115 (1463)
|....+..||+=|++||.+= ..+...+--+|||+.++|.+. .+-.+|..+|++|...|++
T Consensus 46 es~~miedAisK~eeAL~I~-------P~~hdAlw~lGnA~ts~A~l~---~d~~~A~~~F~kA~~~Fqk 105 (186)
T PF06552_consen 46 ESKKMIEDAISKFEEALKIN-------PNKHDALWCLGNAYTSLAFLT---PDTAEAEEYFEKATEYFQK 105 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------TT-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHHHhhc---CChHHHHHHHHHHHHHHHH
Confidence 34467888888888888773 366677777888888888653 3345666666666666653
No 105
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=77.36 E-value=7.3 Score=42.93 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=0.0
Q ss_pred hhhhHhhhhhhHHHHHHHHH
Q 000487 750 LALGQAYKEDGQLHQALKTV 769 (1463)
Q Consensus 750 l~lg~ayked~ql~~~lk~v 769 (1463)
+.++..|-..|++..||+++
T Consensus 12 l~~A~~~~~~~~~~~Al~~L 31 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVL 31 (280)
T ss_dssp --------------------
T ss_pred cccccccccccccccccccc
Confidence 35566666666666666665
No 106
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=75.93 E-value=14 Score=39.83 Aligned_cols=80 Identities=9% Similarity=0.003 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchh
Q 000487 1051 LSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLG 1130 (1463)
Q Consensus 1051 L~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG 1130 (1463)
-..-++-.+.-++.. +.+.+..-+--++.+||.+|...|++.+|+++|.++..-....+...++.+...-+|
T Consensus 12 ~~~~~~~Le~elk~~--------~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~ 83 (177)
T PF10602_consen 12 NAEELEKLEAELKDA--------KSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVA 83 (177)
T ss_pred HHHHHHHHHHHHHHH--------HhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Confidence 333444444545443 556677777889999999999999999999999998887777777777666555555
Q ss_pred hHHHHHHH
Q 000487 1131 HGRRALAE 1138 (1463)
Q Consensus 1131 ~~yR~LAe 1138 (1463)
..+....+
T Consensus 84 i~~~d~~~ 91 (177)
T PF10602_consen 84 IFFGDWSH 91 (177)
T ss_pred HHhCCHHH
Confidence 55554433
No 107
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=75.88 E-value=2.1 Score=37.12 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000487 1048 ENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFK 1114 (1463)
Q Consensus 1048 E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~ 1114 (1463)
+.++..|+++|+++++.. |. -..++..|+.+|+.+|++++|...+++.+..+.
T Consensus 4 ~~~~~~A~~~~~~~l~~~---p~-----------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN---PD-----------NPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT---TT-----------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred ccCHHHHHHHHHHHHHHC---CC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 467899999999999775 22 334566789999999999999999998875443
No 108
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=75.77 E-value=10 Score=38.74 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCc----ccchhhh
Q 000487 1051 LSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDY----TNIILIN 1126 (1463)
Q Consensus 1051 L~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~----tNiALiy 1126 (1463)
-..|+.+|++|+.. .+. +..+. .++-.||..+...|.+++|+..|++++.-|-.-... ...|++.
T Consensus 17 ~~~Ai~~Y~~Al~~--gL~-------~~~~~--~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 17 EEEAIPLYRRALAA--GLS-------GADRR--RALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHHHHHHHc--CCC-------chHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 46899999999964 111 11111 245567888888888999999999998765221111 1246777
Q ss_pred hchhhHHHHHHH
Q 000487 1127 CNLGHGRRALAE 1138 (1463)
Q Consensus 1127 CNLG~~yR~LAe 1138 (1463)
.|+|+--.++..
T Consensus 86 ~~~gr~~eAl~~ 97 (120)
T PF12688_consen 86 YNLGRPKEALEW 97 (120)
T ss_pred HHCCCHHHHHHH
Confidence 777777666444
No 109
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.28 E-value=3.2 Score=32.55 Aligned_cols=34 Identities=32% Similarity=0.294 Sum_probs=26.1
Q ss_pred hhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000487 1123 ILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAA 1178 (1463)
Q Consensus 1123 ALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~a 1178 (1463)
|.++.|||..|.. ++.|.+|+++ |.+++.++.+.
T Consensus 2 a~~~~~la~~~~~------------------~g~~~~A~~~----~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRA------------------QGRYEEALEL----LEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHH------------------CT-HHHHHHH----HHHHHHHH---
T ss_pred HHHHHHHHHHHHh------------------hhhcchhhHH----HHHHHHHHHHH
Confidence 5678899999888 4789999999 99999988765
No 110
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=74.94 E-value=56 Score=43.26 Aligned_cols=86 Identities=22% Similarity=0.312 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhhc--hhhhhHHHHHHHHHhhhhhh---------HHHHhhhcccccCCCCCCchhHHHHHHHhhhHHHH
Q 000487 1254 DAIREALSLYESMG--DLRKQEAAYAYFQLACYQRD---------CFLKFLESDHKKNNLPKGENSFVHRVRQYASLAER 1322 (1463)
Q Consensus 1254 Dai~eALkLyEslG--~L~kqeAAyah~qLAs~yrd---------~cLr~Le~d~k~e~~~K~~~~~iq~ak~y~sLAe~ 1322 (1463)
+-|.+||.++...- |-++ . |+.++++|..|+. +|-+.+..++. .-+.-+ +||..
T Consensus 428 ~~~~~Al~~l~~i~~~~~~~-~-~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~------~~D~Ri-------~Lasl 492 (895)
T KOG2076|consen 428 GKYKEALRLLSPITNREGYQ-N-AFVWYKLARCYMELGEYEEAIEFYEKVLILAPD------NLDARI-------TLASL 492 (895)
T ss_pred ccHHHHHHHHHHHhcCcccc-c-hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------chhhhh-------hHHHH
Confidence 45678888887773 2222 2 6677777777766 77888888753 213233 34455
Q ss_pred H-----HHHHHhhhCCCCCch----------hHHHHHhhccchhhhh
Q 000487 1323 N-----WQKAMDFYGPRSHPT----------MYLTILMERSDLSFRL 1354 (1463)
Q Consensus 1323 n-----yqKAle~Y~p~~hp~----------~~L~IlmERsAL~~~~ 1354 (1463)
+ -+||++...+...|+ -=.+|++.|+-+++.+
T Consensus 493 ~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 493 YQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 5 569999999854444 3367778888887764
No 111
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=74.85 E-value=6.9 Score=48.29 Aligned_cols=61 Identities=18% Similarity=0.346 Sum_probs=48.9
Q ss_pred ccceeeeccCCCCCChhhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 000487 1032 NGGIFKYLEDPVVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAIN 1111 (1463)
Q Consensus 1032 ~GgiFkyL~~~~~~D~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~ 1111 (1463)
-|.||+-| .++..||+||..|+..-+ + -|++++.||..|=+-+++++|-.+|++-|+
T Consensus 438 LG~CY~kl---------~~~~eAiKCykrai~~~d-----------t---e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 438 LGECYEKL---------NRLEEAIKCYKRAILLGD-----------T---EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHh---------ccHHHHHHHHHHHHhccc-----------c---chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 47787666 467889999999997642 2 577888888888888999999999999998
Q ss_pred HHHh
Q 000487 1112 AFKE 1115 (1463)
Q Consensus 1112 aF~e 1115 (1463)
....
T Consensus 495 ~~~~ 498 (559)
T KOG1155|consen 495 VSEL 498 (559)
T ss_pred HHHh
Confidence 7644
No 112
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=74.61 E-value=17 Score=39.18 Aligned_cols=100 Identities=13% Similarity=-0.013 Sum_probs=67.9
Q ss_pred cccceeeeccCCC-CCChhhhHHHHHHHHH-----HHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHH
Q 000487 1031 KNGGIFKYLEDPV-VGDAENNLSSALSCYE-----EAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEH 1104 (1463)
Q Consensus 1031 ~~GgiFkyL~~~~-~~D~E~NL~~AleCYe-----eALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~ 1104 (1463)
+.||--.-|.+-. .++.|.-|.-|...|+ +|.+++..+ .-+----..-|..||.++=.+++|.+|+.
T Consensus 18 ~~Ggsl~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L-------~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~ 90 (157)
T PRK15363 18 RRGGSLRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLL-------TIYDAWSFDYWFRLGECCQAQKHWGEAIY 90 (157)
T ss_pred HcCCcHHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-------HHhCcccHHHHHHHHHHHHHHhhHHHHHH
Confidence 3466666676666 6677877777766653 455555211 11111223456789999988999999999
Q ss_pred HHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhh
Q 000487 1105 AFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSK 1143 (1463)
Q Consensus 1105 afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk 1143 (1463)
+|..|+.+- .|-...++|+|-.+-.+......+
T Consensus 91 aY~~A~~L~------~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 91 AYGRAAQIK------IDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHHHHHhcC------CCCchHHHHHHHHHHHcCCHHHHH
Confidence 999999653 366788999999998866544444
No 113
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=74.19 E-value=25 Score=44.24 Aligned_cols=35 Identities=14% Similarity=-0.017 Sum_probs=24.5
Q ss_pred HHHHHHHHHhh-----hhhhhhhHhhhhhhHHHHHHHHHH
Q 000487 736 NKLWKLVLLLG-----ESYLALGQAYKEDGQLHQALKTVE 770 (1463)
Q Consensus 736 ~klw~lvlllg-----esyl~lg~ayked~ql~~~lk~ve 770 (1463)
..++..+.-.| ..|.+|..+|..-|++..|+++.+
T Consensus 143 ~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~ 182 (697)
T PLN03081 143 KAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182 (697)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHh
Confidence 34555555444 367888999999999888777544
No 114
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=74.15 E-value=3.6 Score=50.41 Aligned_cols=57 Identities=16% Similarity=0.107 Sum_probs=44.4
Q ss_pred cccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchh
Q 000487 1119 YTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRM 1198 (1463)
Q Consensus 1119 ~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~Lwd 1198 (1463)
.++.+..++|+|..+.. .+.|.+|+++ |.+||.+--..
T Consensus 71 dP~~a~a~~NLG~AL~~------------------lGryeEAIa~----f~rALeL~Pd~-------------------- 108 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFS------------------KGRVKDALAQ----FETALELNPNP-------------------- 108 (453)
T ss_pred CCCCHHHHHHHHHHHHH------------------cCCHHHHHHH----HHHHHhhCCCc--------------------
Confidence 45688899999998876 4789999999 99999873221
Q ss_pred hHHHHHHHHHHHHHHhhhhccc
Q 000487 1199 EVHTQFAHTYLRLGMLLAREDT 1220 (1463)
Q Consensus 1199 eV~~qlA~TYlnLG~LLqde~~ 1220 (1463)
-....+|+|+|+.|.....
T Consensus 109 ---aeA~~A~yNLAcaya~LGr 127 (453)
T PLN03098 109 ---DEAQAAYYNKACCHAYREE 127 (453)
T ss_pred ---hHHHHHHHHHHHHHHHcCC
Confidence 1122678999999999988
No 115
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.93 E-value=83 Score=37.01 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=16.0
Q ss_pred HHHHHhhhCCCCCchhHHHH
Q 000487 1324 WQKAMDFYGPRSHPTMYLTI 1343 (1463)
Q Consensus 1324 yqKAle~Y~p~~hp~~~L~I 1343 (1463)
|..|-++|++......|+.-
T Consensus 206 yv~aekc~r~~~qip~f~~s 225 (308)
T KOG1585|consen 206 YVQAEKCYRDCSQIPAFLKS 225 (308)
T ss_pred HHHHHHHhcchhcCccccCh
Confidence 88999999998777776653
No 116
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=73.89 E-value=49 Score=37.18 Aligned_cols=73 Identities=15% Similarity=0.030 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhc
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCN 1128 (1463)
.++..|++.|++.+... |.. .. ...+...||..++.++++.+|+.+|++.|+.+- ++.++.-++.-
T Consensus 46 g~y~~Ai~~f~~l~~~y---P~s-~~-------a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P---~~~~~~~a~Y~ 111 (243)
T PRK10866 46 GNWKQAITQLEALDNRY---PFG-PY-------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP---THPNIDYVLYM 111 (243)
T ss_pred CCHHHHHHHHHHHHHhC---CCC-hH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc---CCCchHHHHHH
Confidence 56678888888887654 222 11 122345778888888999999999999997764 55566666666
Q ss_pred hhhHHHH
Q 000487 1129 LGHGRRA 1135 (1463)
Q Consensus 1129 LG~~yR~ 1135 (1463)
+|..+..
T Consensus 112 ~g~~~~~ 118 (243)
T PRK10866 112 RGLTNMA 118 (243)
T ss_pred HHHhhhh
Confidence 6655444
No 117
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=73.33 E-value=49 Score=38.38 Aligned_cols=48 Identities=15% Similarity=0.238 Sum_probs=38.6
Q ss_pred hHHHHHHhhhhhhhchhhHHHH---HHHHHHHHHHHHHHHHHHHhccCccc
Q 000487 1074 ELQSVLKKKGWVCNEMGRIRLE---RKEMEKGEHAFANAINAFKEVSDYTN 1121 (1463)
Q Consensus 1074 e~~svlKKiGnv~NELG~~yme---q~nlkKAe~afekAI~aF~eV~D~tN 1121 (1463)
|+.+++=.+|-++..+|...+. .+.++.|..+|.+|.-+|+-+.+...
T Consensus 109 E~~~vLfn~aa~~s~~a~~~~~~~~~~~~k~A~~~fq~AAG~F~~l~~~~~ 159 (345)
T cd09034 109 ELLSILFNLAALASQLANEKLITGSEEDLKQAIKSLQKAAGYFEYLKEHVL 159 (345)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6667777777777777776555 47899999999999999999988655
No 118
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=73.07 E-value=97 Score=37.47 Aligned_cols=160 Identities=11% Similarity=0.172 Sum_probs=101.6
Q ss_pred CCChhhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCccc--
Q 000487 1044 VGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTN-- 1121 (1463)
Q Consensus 1044 ~~D~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tN-- 1121 (1463)
.+|+-.-+..+.+++++|+..+ .+.....+...+...+..+|-.|.-+= ++..+-.+-..+=++..+.+-+.-|
T Consensus 140 f~dAr~vF~~~~~~l~~A~~yf-~ld~~~t~hv~I~qd~S~lYk~LafFE---~~~~r~~kmhkRR~d~Le~~~~~Ln~~ 215 (371)
T PF12309_consen 140 FDDAREVFLNGQKWLNKAKEYF-VLDGFVTDHVQILQDISELYKYLAFFE---EDPDRQIKMHKRRADLLEPLLKELNPQ 215 (371)
T ss_pred hHHHHHHHHHHHHHHHHHHHHc-cccccHHHHHHHHHHHHHHHHHHHhhc---CCHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 4567788999999999999998 899999999999999999998887652 2223333333333333333332222
Q ss_pred -----chhhhhchhhHHHHHHHHHHhhhh-------hhhhhhh--hHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhh
Q 000487 1122 -----IILINCNLGHGRRALAEEMVSKVE-------SLKIHTI--FQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVE 1187 (1463)
Q Consensus 1122 -----iALiyCNLG~~yR~LAee~~sk~~-------~~k~~~~--~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~ 1187 (1463)
+--+..-||.+|.-+.+....+.. ....|.+ ......+|+++ |+.=++-|...+
T Consensus 216 ~y~~~~rql~fElae~~~~i~dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~ai~~----y~~fl~s~~~~~-------- 283 (371)
T PF12309_consen 216 YYLNLCRQLWFELAEIYSEIMDLKLEKLDEPQNDNEPPDDHALKKINQLCSKAIKY----YQKFLDSYKSPD-------- 283 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHHHHHHH----HHHHHHHHcCCc--------
Confidence 233445577777766665444432 1111111 11334455555 777777776322
Q ss_pred hhccccccchhhHHHHHHHHHHHHHHhhhhccc
Q 000487 1188 EAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDT 1220 (1463)
Q Consensus 1188 ~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ 1220 (1463)
-...++.+=+++.--+-.+||++|++|-...+
T Consensus 284 -~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~ 315 (371)
T PF12309_consen 284 -SGKLPEKLDEDELRPYLYAYFHIARLYSKLIT 315 (371)
T ss_pred -cccCCCCCcHHHHHHHHHHHHHHHHHHccccC
Confidence 12345556677888889999999999987755
No 119
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=72.63 E-value=27 Score=35.33 Aligned_cols=80 Identities=18% Similarity=0.191 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhh----HHHHHHhh------hhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAE----LQSVLKKK------GWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSD 1118 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae----~~svlKKi------Gnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D 1118 (1463)
.....|-.-|++++..+.. ..... ...+.+.- ..+.-.|+..++.++++++|...|++.+..- .|
T Consensus 6 ~~~~~a~~~y~~~~~~~~~--~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d 80 (145)
T PF09976_consen 6 QQAEQASALYEQALQALQA--GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PD 80 (145)
T ss_pred HHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CC
Confidence 4556677788888877621 11111 22233322 2345556677778899999999999988632 44
Q ss_pred cccchhhhhchhhHH
Q 000487 1119 YTNIILINCNLGHGR 1133 (1463)
Q Consensus 1119 ~tNiALiyCNLG~~y 1133 (1463)
..-..++.-+|+.++
T Consensus 81 ~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 81 PELKPLARLRLARIL 95 (145)
T ss_pred HHHHHHHHHHHHHHH
Confidence 433333333444443
No 120
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=72.51 E-value=7.7 Score=34.11 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAF 1113 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF 1113 (1463)
.++..|++|++.++... |. -...+...|.+++.+|++.+|...|++++..-
T Consensus 9 ~~~~~A~~~~~~~l~~~---p~-----------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 9 EDYEEALEVLERALELD---PD-----------DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CCHHHHHHHHHHHHHhC---cc-----------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 56789999999999774 22 45667789999999999999999999999543
No 121
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=71.90 E-value=85 Score=35.50 Aligned_cols=112 Identities=16% Similarity=0.205 Sum_probs=69.3
Q ss_pred hhhhhccccHHHHHHHHHHHHhhhc-hh--hhhHHHHHHHHHhhhhhhHHHHhhhcccccCCCCCCchhHHHHHHHhhhH
Q 000487 1243 KELRKHEVSANDAIREALSLYESMG-DL--RKQEAAYAYFQLACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYASL 1319 (1463)
Q Consensus 1243 eeleK~eIsa~Dai~eALkLyEslG-~L--~kqeAAyah~qLAs~yrd~cLr~Le~d~k~e~~~K~~~~~iq~ak~y~sL 1319 (1463)
+.++++-+ +.+.+.+.+.+..= |- ...-..|-+-.-|.|||+.+ .+...+.+ +....-
T Consensus 84 ~kie~EL~---~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYla-E~~~~~~~---------------~~~~~~ 144 (236)
T PF00244_consen 84 KKIEDELI---DICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLA-EFDSGDEK---------------KEAAEK 144 (236)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHH-HCTTHHHH---------------HHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHhccccchhHHHHHHHHhcccccccc-ccccchhh---------------HHHHHH
Confidence 45566655 88888899888852 21 22344677778999999973 23222211 344555
Q ss_pred HHHHHHHHHhhhCC---CCCchhHHHHHhhccchhhhhcccchhHH-HHHHHHHHHHcc
Q 000487 1320 AERNWQKAMDFYGP---RSHPTMYLTILMERSDLSFRLSCFLHSNA-MLETALSCLLEG 1374 (1463)
Q Consensus 1320 Ae~nyqKAle~Y~p---~~hp~~~L~IlmERsAL~~~~st~~~S~v-mLe~aL~~mLe~ 1374 (1463)
|...|++|++.... .+||. +|.+.++-|.++.-.......-+ +...|++-....
T Consensus 145 a~~aY~~A~~~a~~~L~~~~p~-rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~ 202 (236)
T PF00244_consen 145 ALEAYEEALEIAKKELPPTHPL-RLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE 202 (236)
T ss_dssp HHHHHHHHHHHHHHHSCTTSHH-HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred HHHhhhhHHHHHhcccCCCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 69999999998865 36665 67777777776644433333333 666666655443
No 122
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=71.75 E-value=4.6 Score=30.72 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=23.3
Q ss_pred hhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 000487 1124 LINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYY 1175 (1463)
Q Consensus 1124 LiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y 1175 (1463)
-++.++|.++.. ++.|.+|+++ |.+||++.
T Consensus 2 ~~~~~lg~~~~~------------------~~~~~~A~~~----~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQ------------------LGNYEEAIEY----FEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHH------------------TT-HHHHHHH----HHHHHHHS
T ss_pred HHHHHHHHHHHH------------------hCCHHHHHHH----HHHHHHHC
Confidence 456777887777 4789999999 99999874
No 123
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.07 E-value=1.7e+02 Score=36.91 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHH
Q 000487 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANA 1109 (1463)
Q Consensus 1050 NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekA 1109 (1463)
.|.+|.+.|.+||.-= .-| -.+..++|..+-.++++.+|++||-+-
T Consensus 505 d~dka~~~ykeal~nd----asc----------~ealfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNND----ASC----------TEALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred cHHHHHHHHHHHHcCc----hHH----------HHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence 3678999999999431 111 234567788888889999999998764
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=69.79 E-value=22 Score=47.18 Aligned_cols=153 Identities=10% Similarity=0.016 Sum_probs=86.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhH--HHHHHHHHHhHH
Q 000487 1089 MGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQ--NMYKQALETAKL 1166 (1463)
Q Consensus 1089 LG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q--~~YnKALe~ak~ 1166 (1463)
|...|..+++++++....+.++.. +.|-+..|.-+|.++..-.+ -.++.-+..-+++. ..+ .++++
T Consensus 37 Li~~~~~~~~~deai~i~~~~l~~------~P~~i~~yy~~G~l~~q~~~--~~~~~lv~~l~~~~~~~~~-~~ve~--- 104 (906)
T PRK14720 37 LIDAYKSENLTDEAKDICEEHLKE------HKKSISALYISGILSLSRRP--LNDSNLLNLIDSFSQNLKW-AIVEH--- 104 (906)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh------CCcceehHHHHHHHHHhhcc--hhhhhhhhhhhhcccccch-hHHHH---
Confidence 334455567778888777766644 45666666677776544221 11111111111111 223 55555
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhh
Q 000487 1167 EYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELR 1246 (1463)
Q Consensus 1167 eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eele 1246 (1463)
|.+.+-=++.-+ .++++||+.|..+.. ++
T Consensus 105 -~~~~i~~~~~~k--------------------------~Al~~LA~~Ydk~g~----~~-------------------- 133 (906)
T PRK14720 105 -ICDKILLYGENK--------------------------LALRTLAEAYAKLNE----NK-------------------- 133 (906)
T ss_pred -HHHHHHhhhhhh--------------------------HHHHHHHHHHHHcCC----hH--------------------
Confidence 554444344433 389999999998888 33
Q ss_pred hccccHHHHHHHHHHHHhhhchhhhhHHHHHHHHHhhhhhhHHHHhhhcccccCCCCCCchhHHHHHHHhhhHHHHHHHH
Q 000487 1247 KHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQK 1326 (1463)
Q Consensus 1247 K~eIsa~Dai~eALkLyEslG~L~kqeAAyah~qLAs~yrd~cLr~Le~d~k~e~~~K~~~~~iq~ak~y~sLAe~nyqK 1326 (1463)
+.+ ++|.++|++=-.+ +.+.+++|-+|... .+++| ..+|.|
T Consensus 134 -ka~---~~yer~L~~D~~n--------~~aLNn~AY~~ae~--------------------dL~KA-------~~m~~K 174 (906)
T PRK14720 134 -KLK---GVWERLVKADRDN--------PEIVKKLATSYEEE--------------------DKEKA-------ITYLKK 174 (906)
T ss_pred -HHH---HHHHHHHhcCccc--------HHHHHHHHHHHHHh--------------------hHHHH-------HHHHHH
Confidence 335 7788888765222 88888898333221 13455 667777
Q ss_pred HHhhhCCCCCchhHHHH
Q 000487 1327 AMDFYGPRSHPTMYLTI 1343 (1463)
Q Consensus 1327 Ale~Y~p~~hp~~~L~I 1343 (1463)
|++.|-...+...++.|
T Consensus 175 AV~~~i~~kq~~~~~e~ 191 (906)
T PRK14720 175 AIYRFIKKKQYVGIEEI 191 (906)
T ss_pred HHHHHHhhhcchHHHHH
Confidence 77766655566655554
No 125
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=69.23 E-value=35 Score=43.28 Aligned_cols=87 Identities=21% Similarity=0.263 Sum_probs=57.2
Q ss_pred CCCCchhhHHHHHHhhhhhhhchhhHHHH---HHHHH------------HHHHHHHHHHHHHHhccCcccchhhhhchh-
Q 000487 1067 GLPTVSAELQSVLKKKGWVCNEMGRIRLE---RKEME------------KGEHAFANAINAFKEVSDYTNIILINCNLG- 1130 (1463)
Q Consensus 1067 ~l~~~~ae~~svlKKiGnv~NELG~~yme---q~nlk------------KAe~afekAI~aF~eV~D~tNiALiyCNLG- 1130 (1463)
...+-+.|...+..++-|..+++|....+ -++|. .++..|.+||.+-+..=+.- -+.=|..+|
T Consensus 248 ~~~td~~e~~~lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~-HvYPYty~gg 326 (618)
T PF05053_consen 248 DAHTDSVELAQLQQDLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNH-HVYPYTYLGG 326 (618)
T ss_dssp CTTEEEHHHHHHHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT---SHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCC-ccccceehhh
Confidence 45677889999999999999999987333 33333 46788999998877765522 233344443
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 000487 1131 HGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRA 1177 (1463)
Q Consensus 1131 ~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~ 1177 (1463)
+.||. +.|..|+.+ +.+|=++.+.
T Consensus 327 ~~yR~-------------------~~~~eA~~~----Wa~aa~Vi~~ 350 (618)
T PF05053_consen 327 YYYRH-------------------KRYREALRS----WAEAADVIRK 350 (618)
T ss_dssp HHHHT-------------------T-HHHHHHH----HHHHHHHHTT
T ss_pred HHHHH-------------------HHHHHHHHH----HHHHHHHHHH
Confidence 33333 678888888 7777666543
No 126
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=68.48 E-value=57 Score=41.20 Aligned_cols=100 Identities=17% Similarity=0.160 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHH--------HHHhhhhhhhhhhhhHHHH-HHH
Q 000487 1090 GRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAE--------EMVSKVESLKIHTIFQNMY-KQA 1160 (1463)
Q Consensus 1090 G~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAe--------e~~sk~~~~k~~~~~q~~Y-nKA 1160 (1463)
|.-+|..++|.+|.++|.+||+-. ++-+.+|||-+-.|..|.+ ...-+.. ..++.++. +=+
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~----p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD------PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD----PNFIKAYLRKGA 434 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----chHHHHHHHHHH
Confidence 666777899999999999988643 4445555555544444444 1111110 01111111 122
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhh
Q 000487 1161 LETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLL 1215 (1463)
Q Consensus 1161 Le~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LL 1215 (1463)
...+-.+|.+|++.|.++. +.|.. ...+..-|-+-.++.
T Consensus 435 al~~mk~ydkAleay~eal--------e~dp~--------~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEAL--------ELDPS--------NAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHH--------hcCch--------hHHHHHHHHHHHHHh
Confidence 3334445777777777776 22223 556666666666654
No 127
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.90 E-value=31 Score=41.95 Aligned_cols=79 Identities=15% Similarity=0.229 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 000487 1096 RKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYY 1175 (1463)
Q Consensus 1096 q~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y 1175 (1463)
..+|..|+..++=..+.-++..|.+++=+.+|+. ++ +. |++||..|
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~f----hL-------------------gd-----------Y~~Al~~Y 80 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF----HL-------------------GD-----------YEEALNVY 80 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHH----hh-------------------cc-----------HHHHHHHH
Confidence 3677888888887777777777777755555542 11 23 66667777
Q ss_pred HHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccc
Q 000487 1176 RAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDT 1220 (1463)
Q Consensus 1176 ~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ 1220 (1463)
+... + -+..+..| --.+|-|+|-||+--+.++-
T Consensus 81 ~~~~-------~-~~~~~~el----~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 81 TFLM-------N-KDDAPAEL----GVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred HHHh-------c-cCCCCccc----chhHHHHHHHHHHHHHHHHH
Confidence 7765 1 12222334 45689999999987766655
No 128
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.84 E-value=52 Score=38.58 Aligned_cols=73 Identities=22% Similarity=0.243 Sum_probs=54.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccchhhhhcccccccCCC
Q 000487 1156 MYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISV 1235 (1463)
Q Consensus 1156 ~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~ 1235 (1463)
.|.||--+ -.+|.++|+.-+ . .|.-|-.|=..|||+++.+.++
T Consensus 46 ~feKakdc----LlkA~~~yEnnr------------s--------lfhAAKayEqaamLake~~kls------------- 88 (308)
T KOG1585|consen 46 KFEKAKDC----LLKASKGYENNR------------S--------LFHAAKAYEQAAMLAKELSKLS------------- 88 (308)
T ss_pred cHHHHHHH----HHHHHHHHHhcc------------c--------HHHHHHHHHHHHHHHHHHHHhH-------------
Confidence 45555555 666776676666 3 5666788999999999999855
Q ss_pred CcccchhhhhhhccccHHHHHHHHHHHHhhhchhhhhHHHHHHHHHh
Q 000487 1236 PCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLA 1282 (1463)
Q Consensus 1236 ~~t~~~~eeleK~eIsa~Dai~eALkLyEslG~L~kqeAAyah~qLA 1282 (1463)
++. |+|+||..+|-..| ..+-||.+.-.-|
T Consensus 89 ------------Evv---dl~eKAs~lY~E~G--spdtAAmaleKAa 118 (308)
T KOG1585|consen 89 ------------EVV---DLYEKASELYVECG--SPDTAAMALEKAA 118 (308)
T ss_pred ------------HHH---HHHHHHHHHHHHhC--CcchHHHHHHHHH
Confidence 445 99999999999999 6666777776666
No 129
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=67.61 E-value=16 Score=44.85 Aligned_cols=92 Identities=18% Similarity=0.139 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhh---hhHHHHHHHHHHhHH
Q 000487 1090 GRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHT---IFQNMYKQALETAKL 1166 (1463)
Q Consensus 1090 G~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~---~~q~~YnKALe~ak~ 1166 (1463)
|.++...++..+++.+|.+|+ |+.--+.-.|..++.+= +.+.+++.+ +-+|+|.+|-|+
T Consensus 210 g~~~yy~~~~~ka~~hf~qal----------~ldpdh~~sk~~~~~~k-----~le~~k~~gN~~fk~G~y~~A~E~--- 271 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQAL----------RLDPDHQKSKSASMMPK-----KLEVKKERGNDAFKNGNYRKAYEC--- 271 (486)
T ss_pred ccccccccchHHHHHHHhhhh----------ccChhhhhHHhHhhhHH-----HHHHHHhhhhhHhhccchhHHHHH---
Confidence 445566799999999999999 44444455556555533 333333322 124789999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccchh
Q 000487 1167 EYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTA 1222 (1463)
Q Consensus 1167 eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ls 1222 (1463)
|-+||+|=-.-+ --.|+.|.|.|.+..+-..+-
T Consensus 272 -Yteal~idP~n~----------------------~~naklY~nra~v~~rLgrl~ 304 (486)
T KOG0550|consen 272 -YTEALNIDPSNK----------------------KTNAKLYGNRALVNIRLGRLR 304 (486)
T ss_pred -HHHhhcCCcccc----------------------chhHHHHHHhHhhhcccCCch
Confidence 999998754432 235677777777666655533
No 130
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=66.60 E-value=1.6e+02 Score=34.09 Aligned_cols=187 Identities=19% Similarity=0.234 Sum_probs=101.1
Q ss_pred CCCCChhhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHH-HHHHHHHHHHHHHHHHHHhccCcc
Q 000487 1042 PVVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLER-KEMEKGEHAFANAINAFKEVSDYT 1120 (1463)
Q Consensus 1042 ~~~~D~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq-~nlkKAe~afekAI~aF~eV~D~t 1120 (1463)
..||.+|..|..|-.-|...+--+ ...+..+.+|+|. |-+=++=|++- ...+.+.....+|...|+.-.+--
T Consensus 21 d~IN~lE~~L~~ar~~fr~~l~e~------~~kL~~~~kkLg~-~I~karPYyea~~~a~~aq~e~q~Aa~~yerA~~~h 93 (239)
T PF05276_consen 21 DEINRLENELDEARATFRRLLSES------TKKLNELAKKLGS-CIEKARPYYEARRKAKEAQQEAQKAALQYERANSMH 93 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH-HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999776 4588899999994 77888888883 222333333344444443332222
Q ss_pred cchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH----------hHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 000487 1121 NIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALET----------AKLEYCESLRYYRAAKLQLNSLVEEAG 1190 (1463)
Q Consensus 1121 NiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~----------ak~eY~kAL~~y~~aK~~l~~~~~~~~ 1190 (1463)
+.| .=+=++||.-...-..++.-..-+...|+|..- |..+-.+..+.|..+...+..+..+-.
T Consensus 94 ~aA-------Ke~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lk 166 (239)
T PF05276_consen 94 AAA-------KEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLK 166 (239)
T ss_pred HHH-------HHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 222223331111100011111123444444322 222333333444444433333333322
Q ss_pred cccccchhhHHHHHHHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHHHHhhhc
Q 000487 1191 SVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMG 1267 (1463)
Q Consensus 1191 ~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALkLyEslG 1267 (1463)
+ ...-|--||.+.-.+...-. ..+....++++.+.-|..-|..||.-+|...
T Consensus 167 r---------~I~KSrPYfe~K~~~~~~l~----------------~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~IS 218 (239)
T PF05276_consen 167 R---------AIKKSRPYFELKAKFNQQLE----------------EQKEKVEELEAKVKQAKSRYSEALRNLEQIS 218 (239)
T ss_pred H---------HHHhhhHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23356677777766555433 1124567778887788888888888888774
No 131
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=65.88 E-value=28 Score=43.34 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHHHHHh
Q 000487 1048 ENNLSSALSCYEEAVKAL 1065 (1463)
Q Consensus 1048 E~NL~~AleCYeeALkal 1065 (1463)
..++..|+.||++|++.-
T Consensus 355 ~~~~~~A~~lle~Ai~ld 372 (517)
T PRK10153 355 AKSLNKASDLLEEILKSE 372 (517)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 456779999999999874
No 132
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.51 E-value=49 Score=40.05 Aligned_cols=91 Identities=16% Similarity=0.280 Sum_probs=58.4
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhh---hhhHHHHHHH
Q 000487 1084 WVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIH---TIFQNMYKQA 1160 (1463)
Q Consensus 1084 nv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~---~~~q~~YnKA 1160 (1463)
|=-+-||..|+.-+.+..|++.|..+++-|+-++-..-++-+|..+-.=+|+|-- +....++++.. -.-+...-+|
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~-~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLV-IGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHH-HhhhhhcCCchhhhhhhhHHHHHH
Confidence 4457889999998999999999999999998887766666666666655555422 11111222211 0013455566
Q ss_pred HHHhHHHHHHHHHHHHHHh
Q 000487 1161 LETAKLEYCESLRYYRAAK 1179 (1463)
Q Consensus 1161 Le~ak~eY~kAL~~y~~aK 1179 (1463)
++. |..|+++|...-
T Consensus 303 m~~----~~~a~~lYk~vl 317 (478)
T KOG1129|consen 303 MEQ----QEDALQLYKLVL 317 (478)
T ss_pred HHh----HHHHHHHHHHHH
Confidence 666 777777776543
No 133
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=65.43 E-value=13 Score=46.63 Aligned_cols=50 Identities=12% Similarity=-0.039 Sum_probs=32.1
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhcc--CcccchhhhhchhhHH
Q 000487 1084 WVCNEMGRIRLERKEMEKGEHAFANAINAFKEVS--DYTNIILINCNLGHGR 1133 (1463)
Q Consensus 1084 nv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~--D~tNiALiyCNLG~~y 1133 (1463)
-+||.|...|...|++++|+..|.+-...--..+ -...++..+|++|.+-
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~ 342 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchH
Confidence 4789999999999999999999887643211111 1222455555555543
No 134
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=65.06 E-value=8.8 Score=43.71 Aligned_cols=81 Identities=20% Similarity=0.324 Sum_probs=56.9
Q ss_pred cccceeeeccCCCCCC-hhhhHHHHHHHHHHHHHHhcC-CCCchhhHHHHHHhhhhhhhchhhHHHHH-----HHHHHHH
Q 000487 1031 KNGGIFKYLEDPVVGD-AENNLSSALSCYEEAVKALGG-LPTVSAELQSVLKKKGWVCNEMGRIRLER-----KEMEKGE 1103 (1463)
Q Consensus 1031 ~~GgiFkyL~~~~~~D-~E~NL~~AleCYeeALkal~~-l~~~~ae~~svlKKiGnv~NELG~~ymeq-----~nlkKAe 1103 (1463)
-+|.+|.|+.+...++ .+.....|.++|++|+++... ||...+- |+|-+.| .++||++. +-+.-|.
T Consensus 123 mKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~Pi------rLgLaLN-~SVF~yEI~~~~~~A~~lAk 195 (244)
T smart00101 123 MKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPI------RLGLALN-FSVFYYEILNSPDRACNLAK 195 (244)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHH------HHHHHHH-HHHHHHHHcCCHHHHHHHHH
Confidence 3599999998776664 445688999999999998643 4443332 4454444 47777774 5566677
Q ss_pred HHHHHHHHHHHhccC
Q 000487 1104 HAFANAINAFKEVSD 1118 (1463)
Q Consensus 1104 ~afekAI~aF~eV~D 1118 (1463)
.+|.+||.....+++
T Consensus 196 ~afd~Ai~~ld~l~e 210 (244)
T smart00101 196 QAFDEAIAELDTLGE 210 (244)
T ss_pred HHHHHHHHHhhccCh
Confidence 888888887776654
No 135
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=64.90 E-value=32 Score=46.78 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=49.8
Q ss_pred HHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHH
Q 000487 1076 QSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALA 1137 (1463)
Q Consensus 1076 ~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LA 1137 (1463)
..-+|..|-..--+|.+++--|.|..|+..|.+||.+.+.++|+-=.|-.+=.++...-.++
T Consensus 235 ~~~~r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~ 296 (1185)
T PF08626_consen 235 RSRKRCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLS 296 (1185)
T ss_pred ccchhhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHh
Confidence 34567788888999999999999999999999999999999999766655555544444333
No 136
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=64.80 E-value=8.7 Score=47.63 Aligned_cols=86 Identities=15% Similarity=0.131 Sum_probs=61.5
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhh
Q 000487 1048 ENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINC 1127 (1463)
Q Consensus 1048 E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyC 1127 (1463)
+..+..+.+..++|+.+. ..+ ....++.-+|...+.++++.+|+.+|++||... .+ ++.|.
T Consensus 397 ~~~l~~a~~~~~~a~al~-~~~-----------~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~------ps-~~a~~ 457 (517)
T PRK10153 397 EKQLAALSTELDNIVALP-ELN-----------VLPRIYEILAVQALVKGKTDEAYQAINKAIDLE------MS-WLNYV 457 (517)
T ss_pred HHHHHHHHHHHHHhhhcc-cCc-----------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CC-HHHHH
Confidence 456666666666655431 001 112455666888888899999999999999776 24 67888
Q ss_pred chhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 000487 1128 NLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRY 1174 (1463)
Q Consensus 1128 NLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~ 1174 (1463)
.+|.++-. .|.+.+|++. |.+|++.
T Consensus 458 ~lG~~~~~------------------~G~~~eA~~~----~~~A~~L 482 (517)
T PRK10153 458 LLGKVYEL------------------KGDNRLAADA----YSTAFNL 482 (517)
T ss_pred HHHHHHHH------------------cCCHHHHHHH----HHHHHhc
Confidence 88888777 4788899999 8888764
No 137
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=64.54 E-value=56 Score=43.25 Aligned_cols=79 Identities=25% Similarity=0.292 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHhcC----CCCchhhH-HHHHHhhhhhhhchhhHHHH-HHHHHHHHHHHHHHHHHHHhccCcccch
Q 000487 1050 NLSSALSCYEEAVKALGG----LPTVSAEL-QSVLKKKGWVCNEMGRIRLE-RKEMEKGEHAFANAINAFKEVSDYTNII 1123 (1463)
Q Consensus 1050 NL~~AleCYeeALkal~~----l~~~~ae~-~svlKKiGnv~NELG~~yme-q~nlkKAe~afekAI~aF~eV~D~tNiA 1123 (1463)
....||+.||++--..+. |.-++... +.+.++.--....-=--|++ +|+++.|+.+|++|- |+-.+.
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-------D~fs~V 945 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-------DYFSMV 945 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-------hhhhhe
Confidence 377899999987544333 22222221 22222221110000011333 478877777777775 555677
Q ss_pred hhhhchhhHHHH
Q 000487 1124 LINCNLGHGRRA 1135 (1463)
Q Consensus 1124 LiyCNLG~~yR~ 1135 (1463)
.|.|-.|.+-.+
T Consensus 946 rI~C~qGk~~kA 957 (1416)
T KOG3617|consen 946 RIKCIQGKTDKA 957 (1416)
T ss_pred eeEeeccCchHH
Confidence 888999988765
No 138
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=64.48 E-value=1.3e+02 Score=35.69 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=38.1
Q ss_pred hHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 000487 1074 ELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDY 1119 (1463)
Q Consensus 1074 e~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~ 1119 (1463)
|+.+++-.+|-++.+++...+..+.++.|..+|.+|--+|+-+.+.
T Consensus 111 E~~~vLfn~aa~~s~~A~~~~~~e~~K~A~~~l~~AAG~f~~l~~~ 156 (346)
T cd09247 111 ELGMVLFLYGAALRERASEVLPTEDFKEAATHLRRAAGVFEFLAHD 156 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777888888888888876555568999999999999999988764
No 139
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=63.82 E-value=12 Score=47.96 Aligned_cols=66 Identities=6% Similarity=-0.025 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhc
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCN 1128 (1463)
.++..|+++|+++++.. |.. .++...|+..++..+++.+|+.++++++..+- .|.. +.+
T Consensus 63 g~~~~A~~~~~~al~~~---P~~-----------~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P-----~~~~--~~~ 121 (765)
T PRK10049 63 KQWQNSLTLWQKALSLE---PQN-----------DDYQRGLILTLADAGQYDEALVKAKQLVSGAP-----DKAN--LLA 121 (765)
T ss_pred CCHHHHHHHHHHHHHhC---CCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHH--HHH
Confidence 34568888888888663 211 22335788888889999999999999987743 2222 445
Q ss_pred hhhHHHH
Q 000487 1129 LGHGRRA 1135 (1463)
Q Consensus 1129 LG~~yR~ 1135 (1463)
+|.++..
T Consensus 122 la~~l~~ 128 (765)
T PRK10049 122 LAYVYKR 128 (765)
T ss_pred HHHHHHH
Confidence 5555554
No 140
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=62.95 E-value=11 Score=45.12 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=41.3
Q ss_pred HHHHHhhhHHHHHHHHHHhhhCCCCCchhHHHHHhhccchhhhhcc
Q 000487 1311 HRVRQYASLAERNWQKAMDFYGPRSHPTMYLTILMERSDLSFRLSC 1356 (1463)
Q Consensus 1311 q~ak~y~sLAe~nyqKAle~Y~p~~hp~~~L~IlmERsAL~~~~st 1356 (1463)
.-||.-+-.+.++.++|.+||...+|.+++++|+...|.+|.+++-
T Consensus 141 ~dAr~vF~~~~~~l~~A~~yf~ld~~~t~hv~I~qd~S~lYk~Laf 186 (371)
T PF12309_consen 141 DDAREVFLNGQKWLNKAKEYFVLDGFVTDHVQILQDISELYKYLAF 186 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHh
Confidence 3367778888999999999999999999999999999999999843
No 141
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=62.90 E-value=16 Score=41.65 Aligned_cols=77 Identities=13% Similarity=0.233 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 000487 1096 RKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYY 1175 (1463)
Q Consensus 1096 q~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y 1175 (1463)
+++|.+|+.+|.+-|+.|-.-. -....+.-||.+|.. ++.|.+|+++ |.+.++-|
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~---~a~~A~y~LG~~y~~------------------~g~~~~A~~~----f~~vv~~y 210 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDST---YQPNANYWLGQLNYN------------------KGKKDDAAYY----FASVVKNY 210 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCc---chHHHHHHHHHHHHH------------------cCCHHHHHHH----HHHHHHHC
Confidence 4788899999998887774322 234455666766655 3688899998 88877766
Q ss_pred HHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccc
Q 000487 1176 RAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDT 1220 (1463)
Q Consensus 1176 ~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ 1220 (1463)
-.-. ....+++.||.++.+...
T Consensus 211 P~s~-----------------------~~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 211 PKSP-----------------------KAADAMFKVGVIMQDKGD 232 (263)
T ss_pred CCCc-----------------------chhHHHHHHHHHHHHcCC
Confidence 5322 245677888888876666
No 142
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=61.96 E-value=24 Score=46.85 Aligned_cols=66 Identities=11% Similarity=0.040 Sum_probs=52.0
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHh
Q 000487 1085 VCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETA 1164 (1463)
Q Consensus 1085 v~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~a 1164 (1463)
|...||.+|-..+++++|+.+|++.|++. .+=+.+.+|+|..|+. + ...+|+++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D------~~n~~aLNn~AY~~ae------------------~-dL~KA~~m- 171 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD------RDNPEIVKKLATSYEE------------------E-DKEKAITY- 171 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC------cccHHHHHHHHHHHHH------------------h-hHHHHHHH-
Confidence 66677888888899999999999999876 3446788899988777 2 45677777
Q ss_pred HHHHHHHHHHHHHHh
Q 000487 1165 KLEYCESLRYYRAAK 1179 (1463)
Q Consensus 1165 k~eY~kAL~~y~~aK 1179 (1463)
|.+|+..|-..|
T Consensus 172 ---~~KAV~~~i~~k 183 (906)
T PRK14720 172 ---LKKAIYRFIKKK 183 (906)
T ss_pred ---HHHHHHHHHhhh
Confidence 888877776665
No 143
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=61.32 E-value=7 Score=43.83 Aligned_cols=80 Identities=29% Similarity=0.461 Sum_probs=56.5
Q ss_pred ccceeeeccCCCCCC-hhhhHHHHHHHHHHHHHHhcC-CCCchhhHHHHHHhhhhhhhchhhHHHH-----HHHHHHHHH
Q 000487 1032 NGGIFKYLEDPVVGD-AENNLSSALSCYEEAVKALGG-LPTVSAELQSVLKKKGWVCNEMGRIRLE-----RKEMEKGEH 1104 (1463)
Q Consensus 1032 ~GgiFkyL~~~~~~D-~E~NL~~AleCYeeALkal~~-l~~~~ae~~svlKKiGnv~NELG~~yme-----q~nlkKAe~ 1104 (1463)
+|.+|.|+.+...+| .+.....|.++|++|+++... ||...+ -++|-+.|- ++||++ .+-+.-|..
T Consensus 122 kgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p------~rLgl~LN~-svF~yei~~~~~~A~~ia~~ 194 (236)
T PF00244_consen 122 KGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP------LRLGLALNY-SVFYYEILNDPEKAIEIAKQ 194 (236)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH------HHHHHHHHH-HHHHHHTSS-HHHHHHHHHH
T ss_pred hccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc------HHHHHHHHH-HHHHHHHcCChHHHHHHHHH
Confidence 699999997766554 246789999999999999855 444333 345555554 677766 355666777
Q ss_pred HHHHHHHHHHhccC
Q 000487 1105 AFANAINAFKEVSD 1118 (1463)
Q Consensus 1105 afekAI~aF~eV~D 1118 (1463)
+|.+|+..+..+++
T Consensus 195 afd~a~~~l~~l~e 208 (236)
T PF00244_consen 195 AFDEAISELDTLSE 208 (236)
T ss_dssp HHHHHHHGGGGSHT
T ss_pred HHHHHHhhhcccch
Confidence 88888877776655
No 144
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=61.21 E-value=52 Score=43.53 Aligned_cols=119 Identities=20% Similarity=0.096 Sum_probs=76.6
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhh
Q 000487 1048 ENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINC 1127 (1463)
Q Consensus 1048 E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyC 1127 (1463)
|.|...|--=+++|..++ +|.+..--+-.-+|.-||.+|=++|+..||..++-.|.....
T Consensus 145 eAN~lfarg~~eeA~~i~-------~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p------------- 204 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEIL-------MEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP------------- 204 (895)
T ss_pred HHHHHHHhCCHHHHHHHH-------HHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-------------
Confidence 556666666667777775 355555556667888899998888888888888776653221
Q ss_pred chhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHH
Q 000487 1128 NLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHT 1207 (1463)
Q Consensus 1128 NLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~T 1207 (1463)
+==-..-.||+.-+++ +++++|.-| |.+||+....-. +..|..+.-
T Consensus 205 ~d~e~W~~ladls~~~-----------~~i~qA~~c----y~rAI~~~p~n~-------------------~~~~ers~L 250 (895)
T KOG2076|consen 205 KDYELWKRLADLSEQL-----------GNINQARYC----YSRAIQANPSNW-------------------ELIYERSSL 250 (895)
T ss_pred CChHHHHHHHHHHHhc-----------ccHHHHHHH----HHHHHhcCCcch-------------------HHHHHHHHH
Confidence 1112334455544444 899999999 999998655443 245666666
Q ss_pred HHHHHHhhhhccc
Q 000487 1208 YLRLGMLLAREDT 1220 (1463)
Q Consensus 1208 YlnLG~LLqde~~ 1220 (1463)
|-++|-+-..+.+
T Consensus 251 ~~~~G~~~~Am~~ 263 (895)
T KOG2076|consen 251 YQKTGDLKRAMET 263 (895)
T ss_pred HHHhChHHHHHHH
Confidence 6666654433333
No 145
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=59.31 E-value=1.9e+02 Score=32.56 Aligned_cols=98 Identities=21% Similarity=0.216 Sum_probs=60.9
Q ss_pred chhhHHHHHHHHHHHHHHhhhhcc-chhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHHHHhhhchhhhhHH
Q 000487 1196 LRMEVHTQFAHTYLRLGMLLARED-TTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEA 1274 (1463)
Q Consensus 1196 LwdeV~~qlA~TYlnLG~LLqde~-~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALkLyEslG~L~kqeA 1274 (1463)
+..+-....|.+|+.+|.-..... .. . .+-...++ ..|++|.+++...
T Consensus 243 ~~~~~~~~~a~~~l~~a~w~~~~~~~~----~----------------~~~~~~~~---~~~~~a~~~~~~~-------- 291 (352)
T PF02259_consen 243 LDKESKELKAKAFLLLAKWLDELYSKL----S----------------SESSDEIL---KYYKEATKLDPSW-------- 291 (352)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhcccc----c----------------cccHHHHH---HHHHHHHHhChhH--------
Confidence 345567788999999998877660 00 0 01112445 8889998888776
Q ss_pred HHHHHHHhhhhhhHHHHhhhcccccCCCCCCchhHHHHHHHhhhHHHHHHHHHHhhhCC
Q 000487 1275 AYAYFQLACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGP 1333 (1463)
Q Consensus 1275 Ayah~qLAs~yrd~cLr~Le~d~k~e~~~K~~~~~iq~ak~y~sLAe~nyqKAle~Y~p 1333 (1463)
..+++++|.++... ++.+.... .+.+. .....|...|-.+|-+|+.+-..
T Consensus 292 ~k~~~~~a~~~~~~----~~~~~~~~--~~~~~---~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 292 EKAWHSWALFNDKL----LESDPREK--EESSQ---EDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHHHH----HHhhhhcc--cccch---hHHHHHHHHHHHHHHHHHhhCCC
Confidence 34889999555444 44443200 00000 12467888899999999987555
No 146
>PLN03077 Protein ECB2; Provisional
Probab=59.29 E-value=76 Score=41.10 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=18.8
Q ss_pred HHhhhHHHHH-----HHHHHhhhCCC-CCch
Q 000487 1314 RQYASLAERN-----WQKAMDFYGPR-SHPT 1338 (1463)
Q Consensus 1314 k~y~sLAe~n-----yqKAle~Y~p~-~hp~ 1338 (1463)
..|..|...+ +++|.+++... -.|+
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd 656 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKMPITPD 656 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHCCCCCC
Confidence 5677887777 89999999876 3444
No 147
>cd09249 BRO1_Rhophilin_2 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-2. This subfamily contains the Bro1-like domain of RhoA-binding protein, Rhophilin-2. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-1, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-2, binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-2 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Roles for Rhophilin-2 may include limiting stress fiber formation or increasing the turnover of F-
Probab=59.25 E-value=4.3e+02 Score=32.70 Aligned_cols=226 Identities=16% Similarity=0.128 Sum_probs=111.5
Q ss_pred HHHHHhhhhhhhchhhHHHHH---------HHHHHHHHHHHHHHHHHHhccCcccc-------hhhhhchhhHHHHHHHH
Q 000487 1076 QSVLKKKGWVCNEMGRIRLER---------KEMEKGEHAFANAINAFKEVSDYTNI-------ILINCNLGHGRRALAEE 1139 (1463)
Q Consensus 1076 ~svlKKiGnv~NELG~~ymeq---------~nlkKAe~afekAI~aF~eV~D~tNi-------ALiyCNLG~~yR~LAee 1139 (1463)
.++.--+++|.++||..|-.. ..++.|..+|..|.-+|+-+.+...- .-+..=|..+|-+-|+|
T Consensus 99 ~sl~fEkasVLFNigAl~Sqlaa~~~r~t~eGlK~A~~~FQ~AAG~F~~L~e~~~~~ps~Dls~~~L~~L~~LmLAQAQE 178 (385)
T cd09249 99 QNLLLEKASILFNIGALYTQIGTRCNRQTQAGLESAVDAFQRAAGVLNYLKETFTHTPSYDMSPAMLSVLVKMMLAQAQE 178 (385)
T ss_pred ccHHHHHHHHHHhHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 445555666666666665442 66999999999999999999885210 01122244556566664
Q ss_pred HHhhhhhh-hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHH-----HHHHHHHHHHH
Q 000487 1140 MVSKVESL-KIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHT-----QFAHTYLRLGM 1213 (1463)
Q Consensus 1140 ~~sk~~~~-k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~-----qlA~TYlnLG~ 1213 (1463)
..=+-... ..+ ..+..-...||+ ..+.-.+|..+-..++. +.....-+.-|-.+.. --|-++|+.|+
T Consensus 179 c~~~Kai~d~~k----~~~~~i~kiAkl-Aaqvs~~Y~~a~~al~s--~~~~~~i~~~W~~~v~~K~~~f~AlA~Y~~A~ 251 (385)
T cd09249 179 CLFEKISLPGIR----NEFFTLVKMAQE-AAKVGEVYMQVHTAMNQ--APVKENIPYSWSSLVQVKAHHYNALAHYFVAT 251 (385)
T ss_pred HHHHHHHhccCc----chhhHHHHHHHH-HHHHHHHHHHHHHHHhc--ccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33221110 000 010000011111 22222233333322221 0111123334544332 34567788888
Q ss_pred hhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHH-HHhhh--c---------hhhhhHHHHHHHHH
Q 000487 1214 LLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALS-LYESM--G---------DLRKQEAAYAYFQL 1281 (1463)
Q Consensus 1214 LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALk-LyEsl--G---------~L~kqeAAyah~qL 1281 (1463)
.+.+....... +. +--.++|. +|+.. | +......+.+|.+=
T Consensus 252 ~l~~~~~~~~~----------------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~hl~~ 304 (385)
T cd09249 252 LLIDHQLNPSD----------------DE-----------DKQEKALSQLYDHMPEGLTPLTILKNKQQRRLLGKAHLRR 304 (385)
T ss_pred HHHhhhcCccc----------------ch-----------HHHHHHHHHHHHhccccCChhhhhcccHHHHHHHHHHHHH
Confidence 88766552210 00 22233333 44442 1 33445567788888
Q ss_pred hhhhhhHHHHhhhcccccCCCCCCchhHHHHHHHhhhHHHHHHHHHHhhhCCCCCchhHHHHHhh
Q 000487 1282 ACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGPRSHPTMYLTILME 1346 (1463)
Q Consensus 1282 As~yrd~cLr~Le~d~k~e~~~K~~~~~iq~ak~y~sLAe~nyqKAle~Y~p~~hp~~~L~IlmE 1346 (1463)
|..+|---+|...+.-. .++ ...+|++ -....++++.-|...+..++|+.+..+
T Consensus 305 a~~~~eea~r~~~~c~~----l~~-~~~l~~v------l~~~~~~s~~~~~~~~~~~~~~~~~~~ 358 (385)
T cd09249 305 AIMHHEEAIREASLCKK----LRN-IDVLQEV------LSAAHNRSLLKYAQHQKEDDFLDLIDA 358 (385)
T ss_pred HHHhhHHHHHHHHHHHH----HHH-HHHHHHH------HHHHHHHHHHHHHhhccccchhhcccc
Confidence 87777633444444311 111 1123322 234478888889988888888876543
No 148
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=59.10 E-value=1.6e+02 Score=31.87 Aligned_cols=73 Identities=11% Similarity=0.112 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhc
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCN 1128 (1463)
.++..|++.|++...-+ |..+- ...+...||..++..+++..|+..|++=|+.|=. +..+.-++.-
T Consensus 19 g~y~~Ai~~f~~l~~~~---P~s~~--------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~---~~~~~~A~Y~ 84 (203)
T PF13525_consen 19 GDYEEAIKLFEKLIDRY---PNSPY--------APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN---SPKADYALYM 84 (203)
T ss_dssp T-HHHHHHHHHHHHHH----TTSTT--------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----TTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC---CCChH--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CcchhhHHHH
Confidence 45667777777776554 22221 1224455666677778888888888887765533 3445555555
Q ss_pred hhhHHHH
Q 000487 1129 LGHGRRA 1135 (1463)
Q Consensus 1129 LG~~yR~ 1135 (1463)
+|..+-.
T Consensus 85 ~g~~~~~ 91 (203)
T PF13525_consen 85 LGLSYYK 91 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554444
No 149
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=58.32 E-value=15 Score=47.26 Aligned_cols=47 Identities=6% Similarity=-0.124 Sum_probs=32.7
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHH
Q 000487 1084 WVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRAL 1136 (1463)
Q Consensus 1084 nv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~L 1136 (1463)
.+.+-+|....+.|.+.+|+.+|++++. .+++-+-.+-++||..+..
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~------~~p~~~~~~~~~a~~l~~~ 201 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFERLSR------QHPEFENGYVGWAQSLTRR 201 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHc
Confidence 3445556666667788888888888774 4456677777888887763
No 150
>PF10505 NARG2_C: NMDA receptor-regulated gene protein 2 C-terminus; InterPro: IPR019535 The transition of neuronal cells from pre-cursor to mature state is regulated by the N-methyl-d-aspartate (NMDA) receptor, a glutamate-gated ion channel that is permeable to Ca2+. NMDA receptors probably mediate this activity by permitting expression of NARG2. NARG2 (NMDA receptor-regulated gene protein 2) is transiently expressed, being a regulatory protein that is present in the nucleus of dividing cells and then down-regulated as progenitors exit the cell cycle and begin to differentiate. NARG2 contains repeats of (S/T)PXX, (11 in mouse, 6 in human), a putative DNA-binding motif that is found in many gene-regulatory proteins including Kruppel, Hunchback and Antennapedi [].
Probab=58.29 E-value=63 Score=36.69 Aligned_cols=130 Identities=17% Similarity=0.235 Sum_probs=90.6
Q ss_pred Eeeeec----ccceeccccccccc---C-C---CceeEEE--eecc---c-ccccCchhhHHHHHHhhhcCCCcEEEEEe
Q 000487 312 LFWQFH----NFRMLLGSDLLLFS---N-E---KYVAVSL--HLWD---V-ARQVTPLTWLEAWLDNVMASVPELAICYH 374 (1463)
Q Consensus 312 l~WtF~----di~MLVGSDmPIFg---~-~---~~paVSL--rLrD---~-skpin~lTgLD~WLDNlM~NVPElamCyH 374 (1463)
.+|+|+ +++|||-+.++-+. + . ++-.|++ ++.- - -+-+|.-..+..|+.-.+-.-- ...|.|
T Consensus 17 ~lw~L~~~~~~~~lLvR~~v~~~~~~~~~~~~~~~~pv~v~~KlEyq~~~G~E~lT~sEl~~~W~~~~Lr~~s-~~~~~R 95 (220)
T PF10505_consen 17 KLWSLGDKDSDLLLLVRCSVDGVEDSKSDRKLGCQFPVSVLPKLEYQPEYGAEILTKSELCKLWTESKLRPNS-SLLRAR 95 (220)
T ss_pred EEEEcCCCCcceEEEEEeccceeeecccCCCccceeeEEeeeccccccccchhhcCHHHHHHHHHHHhhCCCC-eeEEEE
Confidence 489999 99999999999885 1 1 1222444 3332 1 2456777889999998876654 445888
Q ss_pred eccceeceeeecccccc--cccCCCCCCCCCcChHHHHHhHHHHHHHHhhhccCCCceEEEEeeCCCCeEEeeccc
Q 000487 375 ENGVVQGYELLKTDDIF--LLKGVSDDGTPAFHPHVVQQSGLSVLRFLQENCKQDPGAYWLYKSAGEDVIRLFDLS 448 (1463)
Q Consensus 375 ~nGiVQ~YElikTeDIp--~leg~s~~g~~~F~P~vV~~~A~nvL~FLksnCtkdG~TYwL~k~~~ed~vkLYDLT 448 (1463)
.|-. .-+++.-|-+. .+.. ....|.|.-..++-..|..||+.--.=.+|.|.|-...++..|-+|=-+
T Consensus 96 I~~~--t~~vl~~Ek~~~~~l~~----~~~~~~p~~~~~~L~~L~~~Lk~L~~L~pG~YLLrh~~~d~f~~i~k~~ 165 (220)
T PF10505_consen 96 INAW--TSEVLSIEKLSMESLEE----ELCRFYPIKSLNILSHLHEFLKKLSSLQPGSYLLRHTPGDSFVLIYKSS 165 (220)
T ss_pred Eccc--cCceeEEEecCHHHHHH----HhhhcCCCcHHHHHHHHHHHHHHHcCCCCCcEEEEecCCCCcEEEEEcC
Confidence 8765 33444444433 2211 1357889889999999999999988888999999999988877666443
No 151
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=58.10 E-value=7.7 Score=32.24 Aligned_cols=29 Identities=10% Similarity=0.059 Sum_probs=26.4
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 000487 1084 WVCNEMGRIRLERKEMEKGEHAFANAINA 1112 (1463)
Q Consensus 1084 nv~NELG~~ymeq~nlkKAe~afekAI~a 1112 (1463)
.++..||..|+.+|++++|+.+|+++|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999975
No 152
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=57.90 E-value=3e+02 Score=32.87 Aligned_cols=47 Identities=11% Similarity=0.163 Sum_probs=36.2
Q ss_pred HHHHHHhhhhhhhchhhHHHHH---------HHHHHHHHHHHHHHHHHHhccCccc
Q 000487 1075 LQSVLKKKGWVCNEMGRIRLER---------KEMEKGEHAFANAINAFKEVSDYTN 1121 (1463)
Q Consensus 1075 ~~svlKKiGnv~NELG~~ymeq---------~nlkKAe~afekAI~aF~eV~D~tN 1121 (1463)
..++.--+++|.+++|..+... +.++.|..+|.+|.-+|+-+.+...
T Consensus 98 ~~~l~fEka~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~~~~~ 153 (355)
T cd09241 98 LSSLKFERANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEYILQHLL 153 (355)
T ss_pred eccHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445566667777777776552 6799999999999999999998764
No 153
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=57.49 E-value=2.8e+02 Score=33.02 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=45.6
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCc------------------hhhHHHHHHhhhhhhhchhhHHHH---------HHHHH
Q 000487 1048 ENNLSSALSCYEEAVKALGGLPTV------------------SAELQSVLKKKGWVCNEMGRIRLE---------RKEME 1100 (1463)
Q Consensus 1048 E~NL~~AleCYeeALkal~~l~~~------------------~ae~~svlKKiGnv~NELG~~yme---------q~nlk 1100 (1463)
|.-+..-.++|.+--.+-..||.+ .....++.--+++|.++||..+.+ .+.++
T Consensus 54 ~~~~~~l~~Yy~qL~~l~~rfp~~~~~~~v~F~W~d~~~~~~~~~~~sl~fEka~VLfNiaal~s~~A~~~~~~~~~~~K 133 (348)
T cd09242 54 ETGRDLLYKYYGQLELLELRFPFNNKELKVDFTWYDAFYKSKKVKQHSLAFEKASVLFNIGALLSQLAAEKYREDEDDLK 133 (348)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccccceeeeeecCCCCCceeecchHHHHHHHHHHHHHHHHHHHHHhccCChHHHH
Confidence 445555566666654444445632 112234444556666666666544 37899
Q ss_pred HHHHHHHHHHHHHHhccCc
Q 000487 1101 KGEHAFANAINAFKEVSDY 1119 (1463)
Q Consensus 1101 KAe~afekAI~aF~eV~D~ 1119 (1463)
.|..+|..|.-+|+-+.+.
T Consensus 134 ~A~~~fq~AAG~f~~l~e~ 152 (348)
T cd09242 134 EAITNLQQAAGCFQYINEN 152 (348)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 154
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.06 E-value=2.9e+02 Score=32.81 Aligned_cols=92 Identities=24% Similarity=0.293 Sum_probs=53.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccchhhhhcccccccCC
Q 000487 1155 NMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDIS 1234 (1463)
Q Consensus 1155 ~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~ 1234 (1463)
+..-+|.+. |.+|++||+..= ++ | .++.+.---.++.+.+.-.+ .++++
T Consensus 93 am~lEa~~~----~~~A~e~y~~lL-------~d-d----------pt~~v~~KRKlAilka~GK~-l~aIk-------- 141 (289)
T KOG3060|consen 93 AMLLEATGN----YKEAIEYYESLL-------ED-D----------PTDTVIRKRKLAILKAQGKN-LEAIK-------- 141 (289)
T ss_pred HHHHHHhhc----hhhHHHHHHHHh-------cc-C----------cchhHHHHHHHHHHHHcCCc-HHHHH--------
Confidence 555566666 999999998764 11 1 44444444667777666555 34444
Q ss_pred CCcccchhhhhhhccccHHHHHHHHHHHHhhhchhhhhHHHHHHHHHhhhh
Q 000487 1235 VPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQ 1285 (1463)
Q Consensus 1235 ~~~t~~~~eeleK~eIsa~Dai~eALkLyEslG~L~kqeAAyah~qLAs~y 1285 (1463)
..-+.-+.-..=-||..+.-.+|=++| ..-.||||+=.+-+.+
T Consensus 142 ------~ln~YL~~F~~D~EAW~eLaeiY~~~~--~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 142 ------ELNEYLDKFMNDQEAWHELAEIYLSEG--DFEKAAFCLEELLLIQ 184 (289)
T ss_pred ------HHHHHHHHhcCcHHHHHHHHHHHHhHh--HHHHHHHHHHHHHHcC
Confidence 111111121222366677777777777 4555777777776654
No 155
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=56.56 E-value=94 Score=35.04 Aligned_cols=69 Identities=7% Similarity=-0.058 Sum_probs=47.3
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhH
Q 000487 1086 CNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAK 1165 (1463)
Q Consensus 1086 ~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak 1165 (1463)
..+.|...++.++|++|+..|++.+..+..- .=.....-+||..|.. .+.|.+|+.+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s---~~a~~a~l~la~ayy~------------------~~~y~~A~~~-- 91 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYK------------------NADLPLAQAA-- 91 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHh------------------cCCHHHHHHH--
Confidence 4455666777899999999999988755422 1122334566666555 3578899999
Q ss_pred HHHHHHHHHHHHHh
Q 000487 1166 LEYCESLRYYRAAK 1179 (1463)
Q Consensus 1166 ~eY~kAL~~y~~aK 1179 (1463)
|++.++.+-...
T Consensus 92 --~e~fi~~~P~~~ 103 (243)
T PRK10866 92 --IDRFIRLNPTHP 103 (243)
T ss_pred --HHHHHHhCcCCC
Confidence 888888776654
No 156
>PLN03077 Protein ECB2; Provisional
Probab=56.43 E-value=1.4e+02 Score=38.81 Aligned_cols=117 Identities=17% Similarity=0.178 Sum_probs=60.9
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHH--HHHhhhhhhhhhhhhHHHHHHHHH
Q 000487 1085 VCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAE--EMVSKVESLKIHTIFQNMYKQALE 1162 (1463)
Q Consensus 1085 v~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAe--e~~sk~~~~k~~~~~q~~YnKALe 1162 (1463)
++|-|-..|.++|++++|...|.+. -..+--...+|..|+..|.+..++.- +|...+ .... ...|+-.+.
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g-~~Pd----~~T~~~ll~ 597 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG-VNPD----EVTFISLLC 597 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC----cccHHHHHH
Confidence 4455556677777777777766653 11111122366777777777665433 333221 0111 134444443
Q ss_pred H-h-HHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccchhhhhc
Q 000487 1163 T-A-KLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYE 1226 (1463)
Q Consensus 1163 ~-a-k~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ls~~ye 1226 (1463)
. + .-.+.+|++++...+. .....|. ..+|..|..+|.+...+.++++
T Consensus 598 a~~~~g~v~ea~~~f~~M~~--------~~gi~P~---------~~~y~~lv~~l~r~G~~~eA~~ 646 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEE--------KYSITPN---------LKHYACVVDLLGRAGKLTEAYN 646 (857)
T ss_pred HHhhcChHHHHHHHHHHHHH--------HhCCCCc---------hHHHHHHHHHHHhCCCHHHHHH
Confidence 3 0 0124567777776651 0111121 2578888888888888665544
No 157
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=55.69 E-value=16 Score=42.32 Aligned_cols=49 Identities=18% Similarity=0.110 Sum_probs=43.7
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHH
Q 000487 1081 KKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRA 1135 (1463)
Q Consensus 1081 KiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~ 1135 (1463)
.=+-++|-||..|++.|++..|..+|.++++.|- |=..+.+|||..|-+
T Consensus 132 ~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~------~~p~~~nNlgms~~L 180 (257)
T COG5010 132 TDWEAWNLLGAALDQLGRFDEARRAYRQALELAP------NEPSIANNLGMSLLL 180 (257)
T ss_pred CChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc------CCchhhhhHHHHHHH
Confidence 3467899999999999999999999999999874 667889999999888
No 158
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=54.89 E-value=27 Score=37.56 Aligned_cols=58 Identities=19% Similarity=0.157 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 000487 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSD 1118 (1463)
Q Consensus 1050 NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D 1118 (1463)
++..|++||.++++- ..-...+-.+|-.+=++.+..++|.....+.+++-...++-+|
T Consensus 51 d~~~A~k~y~~~~~~-----------~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d 108 (177)
T PF10602_consen 51 DLEEALKAYSRARDY-----------CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGD 108 (177)
T ss_pred hHHHHHHHHHHHhhh-----------cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccch
Confidence 467899999998843 3445556667777778888889999999999999999888887
No 159
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.63 E-value=74 Score=39.90 Aligned_cols=90 Identities=21% Similarity=0.213 Sum_probs=57.6
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHH----H-HHHHHHHHHHHHHHHHHhccCccc
Q 000487 1047 AENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLER----K-EMEKGEHAFANAINAFKEVSDYTN 1121 (1463)
Q Consensus 1047 ~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq----~-nlkKAe~afekAI~aF~eV~D~tN 1121 (1463)
...|+..|++||+.|.+. .+....+..-.+.+.||..|++. . +.++|..+|.+|. +..|
T Consensus 261 ~~~d~e~a~~~l~~aa~~---------~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA-------~~g~ 324 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAES---------FKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA-------ELGN 324 (552)
T ss_pred ccccHHHHHHHHHHHHHH---------HHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHH-------hcCC
Confidence 457888999999999864 23334444566888999998884 3 5666666666655 4444
Q ss_pred chhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHH
Q 000487 1122 IILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESL 1172 (1463)
Q Consensus 1122 iALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL 1172 (1463)
.....+||..|.. . . +..++.+|+++ |.+|-
T Consensus 325 -~~a~~~lg~~~~~-------g--~------~~~d~~~A~~y----y~~Aa 355 (552)
T KOG1550|consen 325 -PDAQYLLGVLYET-------G--T------KERDYRRAFEY----YSLAA 355 (552)
T ss_pred -chHHHHHHHHHHc-------C--C------ccccHHHHHHH----HHHHH
Confidence 2334566766655 1 0 12467788888 77664
No 160
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=52.61 E-value=17 Score=37.20 Aligned_cols=49 Identities=14% Similarity=-0.010 Sum_probs=36.1
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHH
Q 000487 1085 VCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRAL 1136 (1463)
Q Consensus 1085 v~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~L 1136 (1463)
+..+++..+...|+..+|+.+|++++.. --+...-...+.++|..||.+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~---gL~~~~~~~a~i~lastlr~L 51 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAA---GLSGADRRRALIQLASTLRNL 51 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCchHHHHHHHHHHHHHHHc
Confidence 4566777777778899999999999863 222334456777899999984
No 161
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=52.50 E-value=57 Score=36.39 Aligned_cols=87 Identities=14% Similarity=0.062 Sum_probs=62.3
Q ss_pred hHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-CcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhh
Q 000487 1074 ELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVS-DYTNIILINCNLGHGRRALAEEMVSKVESLKIHTI 1152 (1463)
Q Consensus 1074 e~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~-D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~ 1152 (1463)
++..+...++..+... -+-....+..|+..|.-||-..+-.+ ++..+|.++-.|+-+||-+.+....+
T Consensus 70 ~~~~i~~~i~~~~~~~--~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~--------- 138 (214)
T PF09986_consen 70 QKEKIKENISSRWKPR--DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEK--------- 138 (214)
T ss_pred HHHHHHHHHHhhcccC--CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHH---------
Confidence 4555666666666544 33334688999999999999888777 55569999999999999966633333
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHH
Q 000487 1153 FQNMYKQALETAKLEYCESLRYYRA 1177 (1463)
Q Consensus 1153 ~q~~YnKALe~ak~eY~kAL~~y~~ 1177 (1463)
.++.+|++. |.+|+..-..
T Consensus 139 --~fl~~Al~~----y~~a~~~e~~ 157 (214)
T PF09986_consen 139 --RFLRKALEF----YEEAYENEDF 157 (214)
T ss_pred --HHHHHHHHH----HHHHHHhCcC
Confidence 688888888 8888765433
No 162
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=51.60 E-value=68 Score=40.48 Aligned_cols=92 Identities=15% Similarity=0.110 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 000487 1096 RKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYY 1175 (1463)
Q Consensus 1096 q~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y 1175 (1463)
.++.++-+++-.+|+.++. +.| ..|-.|||+...-+..- +..|.||+++|+.-|.++-...
T Consensus 181 ERnp~aRIkaA~eALei~p------dCA-------dAYILLAEEeA~Ti~Ea------e~l~rqAvkAgE~~lg~s~~~~ 241 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINP------DCA-------DAYILLAEEEASTIVEA------EELLRQAVKAGEASLGKSQFLQ 241 (539)
T ss_pred cCCHHHHHHHHHHHHHhhh------hhh-------HHHhhcccccccCHHHH------HHHHHHHHHHHHHhhchhhhhh
Confidence 3555555566666665542 233 55666888544431111 2578888888666665543222
Q ss_pred HHHhhhhhhhhhhhccccccchhhHHHH----HHHHHHHHHHhhhhccchh
Q 000487 1176 RAAKLQLNSLVEEAGSVSNSLRMEVHTQ----FAHTYLRLGMLLAREDTTA 1222 (1463)
Q Consensus 1176 ~~aK~~l~~~~~~~~~~~~~LwdeV~~q----lA~TYlnLG~LLqde~~ls 1222 (1463)
.+...|+.+.+. +..+-.+|||.+.+.+.+-
T Consensus 242 ----------------~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~ 276 (539)
T PF04184_consen 242 ----------------HHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLR 276 (539)
T ss_pred ----------------cccchhhhhhccccchhhhhHHHHHHHHHHhCChH
Confidence 122234444444 4566688999999888733
No 163
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=51.57 E-value=5.2e+02 Score=31.31 Aligned_cols=48 Identities=15% Similarity=0.123 Sum_probs=36.9
Q ss_pred hHHHHHHhhhhhhhchhhHHHHH---------HHHHHHHHHHHHHHHHHHhccCccc
Q 000487 1074 ELQSVLKKKGWVCNEMGRIRLER---------KEMEKGEHAFANAINAFKEVSDYTN 1121 (1463)
Q Consensus 1074 e~~svlKKiGnv~NELG~~ymeq---------~nlkKAe~afekAI~aF~eV~D~tN 1121 (1463)
...++.--+++|..+||..+.+. +.++.|..+|..|.-+|+-+.|...
T Consensus 105 ~~~~l~fEka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l~e~~~ 161 (361)
T cd09239 105 THEDIKFEEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYLREHYP 161 (361)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33456666777777777776542 6799999999999999999998643
No 164
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=51.33 E-value=1.6e+02 Score=35.82 Aligned_cols=100 Identities=17% Similarity=0.173 Sum_probs=66.9
Q ss_pred HHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHH
Q 000487 1077 SVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNM 1156 (1463)
Q Consensus 1077 svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~ 1156 (1463)
....-|+--|-||.--++...+.++|...+.+|+.+.. +.+....-||++.-. ++.
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~------~cvRAsi~lG~v~~~------------------~g~ 229 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADK------KCVRASIILGRVELA------------------KGD 229 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc------cceehhhhhhHHHHh------------------ccc
Confidence 34455677777888888888888888888888887643 344455556776555 478
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccchh
Q 000487 1157 YKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTA 1222 (1463)
Q Consensus 1157 YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ls 1222 (1463)
|.+|++. |...++ -++..=-+|---|..+|--+|..-.-...+.
T Consensus 230 y~~AV~~----~e~v~e------------------Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 230 YQKAVEA----LERVLE------------------QNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred hHHHHHH----HHHHHH------------------hChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8888888 655443 2233344567778888888887655555544
No 165
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=51.25 E-value=29 Score=42.35 Aligned_cols=91 Identities=20% Similarity=0.218 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhh-----------hhhhhhhHHHHHHHHHHhHHHHHHHH
Q 000487 1104 HAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVES-----------LKIHTIFQNMYKQALETAKLEYCESL 1172 (1463)
Q Consensus 1104 ~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~-----------~k~~~~~q~~YnKALe~ak~eY~kAL 1172 (1463)
....+-...+++|.. .||..|-..|++-.+--.. .++.+ ..-.+|-+.|.....+||
T Consensus 271 ~~l~~~~~l~r~v~~---------~lGq~YLk~ae~Ps~vf~tl~Yd~d~~~~~~~~~~---~~~~~aq~~a~~l~~~Al 338 (404)
T PF12753_consen 271 DNLEKQAKLYRSVAR---------RLGQSYLKEAEEPSSVFTTLQYDDDYEGEEEEIDG---LDADEAQKIAQELIKKAL 338 (404)
T ss_dssp HHHHH-HHHHHTT-S---------TTS-HHHHHHHHHHHHHHHHHHHH------HHHHH-----HHC-STTHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHH---------HhhHHHHHHhccchhhheeeeecccccchhhhhcc---hhhHHHHHHHHHHHHHHH
Confidence 333443555666543 4788888888832222110 11111 123344445555599999
Q ss_pred HHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccc
Q 000487 1173 RYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDT 1220 (1463)
Q Consensus 1173 ~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ 1220 (1463)
+|+..++ +.-.|..|- ++|.+|..||.|+..++.
T Consensus 339 ~yL~kA~----------d~ddPetWv----~vAEa~I~LGNL~d~eS~ 372 (404)
T PF12753_consen 339 EYLKKAQ----------DEDDPETWV----DVAEAMIDLGNLYDNESK 372 (404)
T ss_dssp HHHHHHH----------HS--TTHHH----HHHHHHHHHHHH-SSHHH
T ss_pred HHHHHhh----------ccCChhHHH----HHHHHHhhhhcccccchH
Confidence 9999998 345566665 579999999999988776
No 166
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=50.82 E-value=1.6e+02 Score=36.29 Aligned_cols=72 Identities=19% Similarity=0.122 Sum_probs=53.1
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCch-hhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccch
Q 000487 1047 AENNLSSALSCYEEAVKALGGLPTVS-AELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNII 1123 (1463)
Q Consensus 1047 ~E~NL~~AleCYeeALkal~~l~~~~-ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiA 1123 (1463)
.+.+|..|+.-|+.|+..+.---+.+ .+....+.-+--++++|..+++..+.|.+|+...++.+. -|..|+=
T Consensus 220 K~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe-----~~~~N~K 292 (397)
T KOG0543|consen 220 KEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE-----LDPNNVK 292 (397)
T ss_pred hhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh-----cCCCchh
Confidence 35688999999999999983211222 234444444555778999999999999999999999983 5777754
No 167
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=50.45 E-value=2.8e+02 Score=32.70 Aligned_cols=183 Identities=18% Similarity=0.205 Sum_probs=107.1
Q ss_pred chhhHHHHHHHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHHHHhhhc--------
Q 000487 1196 LRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMG-------- 1267 (1463)
Q Consensus 1196 LwdeV~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALkLyEslG-------- 1267 (1463)
-=.++.+++|.++||+|.+|.....-. . + .-.+--|+++ ..+++|--+++-..
T Consensus 98 ~~~~~~fE~a~vL~N~aa~~s~~a~~~---~------------~-~~~~~~k~A~---~~fq~AAg~f~~l~~~~~~~~s 158 (377)
T PF03097_consen 98 SQSSLAFEKACVLFNIAALYSQLAASQ---N------------R-STDEGLKEAC---NYFQRAAGIFQYLRENFKDSPS 158 (377)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHS----------------T-TSHHHHHHHH---HHHHHHHHHHHHHHHHSSS-SS
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhc---c------------c-ccchhHHHHH---HHHHHHHHHHHHHHHhhcccCC
Confidence 335678999999999999998776611 0 0 0112234444 77777777666542
Q ss_pred -hhh-hhHHHHHHHHHhhhhhhHHHHhhhcccccCCCCCCchhHHHHHHHhhhHHHHHHHHHHhhhCCCC----CchhHH
Q 000487 1268 -DLR-KQEAAYAYFQLACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGPRS----HPTMYL 1341 (1463)
Q Consensus 1268 -~L~-kqeAAyah~qLAs~yrd~cLr~Le~d~k~e~~~K~~~~~iq~ak~y~sLAe~nyqKAle~Y~p~~----hp~~~L 1341 (1463)
++. ..--++.+..||..|.-.+.|++. +. ++ .+.+ || -+.-+-..|+.|.+.+.... -|..|.
T Consensus 159 ~Dl~~~~l~~l~~l~lAqAQe~~~~ka~~-~~------~~-~~li--AK-La~~~~~~Y~~a~~~l~~~~~~~~~~~~w~ 227 (377)
T PF03097_consen 159 PDLSPEVLSALSNLMLAQAQECFYEKAIA-DK------KK-PSLI--AK-LAAQASELYDEAHEALQSSPLSESIPKDWR 227 (377)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHH-TT------G--HHHH--HH-HHHHHHHHHHHHHHHHTTCHHHHCSHCCHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHH-cc------Cc-hHHH--HH-HHHHHHHHHHHHHHHHhcccccccccHHHH
Confidence 111 122477888889888877777766 31 11 3333 32 33445566999999998872 355677
Q ss_pred HHHhhccchhhhhcccchhHH------------HHHHHHHHHHccccccccccccccccchhHHHHHHHHHHHHHHHHHH
Q 000487 1342 TILMERSDLSFRLSCFLHSNA------------MLETALSCLLEGRHISESCSESLSTNGSKVCAKFWNQLQMLLKKMLA 1409 (1463)
Q Consensus 1342 ~IlmERsAL~~~~st~~~S~v------------mLe~aL~~mLe~r~I~E~~ed~~~~~~~~l~~~F~sqLQ~lLK~ml~ 1409 (1463)
.+..-...+|..++..+.+.. -|..|...+=+..++.... .......+.+..+..+++..|++.-+
T Consensus 228 ~~~~~K~~~~~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~l~~~i~~~l~~~~k 305 (377)
T PF03097_consen 228 SYVQVKSAYYRALAHYHQALAAEEAKKYGEAIARLRRAEEALKEASKLAKKC--SKSSSLQDDLKSLLDQIQEKLEKAEK 305 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHCCCH--SCCSTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhcc--cchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777666655544443 3333433333333222221 12233445577777777777777665
Q ss_pred h
Q 000487 1410 T 1410 (1463)
Q Consensus 1410 l 1410 (1463)
.
T Consensus 306 d 306 (377)
T PF03097_consen 306 D 306 (377)
T ss_dssp H
T ss_pred c
Confidence 3
No 168
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=49.94 E-value=3.3e+02 Score=35.14 Aligned_cols=145 Identities=19% Similarity=0.173 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHH----------HHHHHHHHHHHHHHHHHHHhccC
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLE----------RKEMEKGEHAFANAINAFKEVSD 1118 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~yme----------q~nlkKAe~afekAI~aF~eV~D 1118 (1463)
.+|..+..-|.++.+-+..+.....+...-+..+-+.-+||-.+-+. ++.+.++++..+..-.+.+.+.+
T Consensus 157 ~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~ekl~~~~~~a~~~L~g 236 (557)
T COG0497 157 EAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSEKLAEAIQNALELLSG 236 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhC
Confidence 45888888888888877555555556666667777778888776332 35566777777777777777764
Q ss_pred cccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchh
Q 000487 1119 YTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRM 1198 (1463)
Q Consensus 1119 ~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~Lwd 1198 (1463)
..+-.-++.+||+....++. ..+.+ +.|....+. -.+|+-.+.++..+|..+.++-+-.
T Consensus 237 e~~~~~~~~~l~~a~~~l~~--------~~~~d---~~l~~~~~~----l~ea~~~l~ea~~el~~~~~~le~D------ 295 (557)
T COG0497 237 EDDTVSALSLLGRALEALED--------LSEYD---GKLSELAEL----LEEALYELEEASEELRAYLDELEFD------ 295 (557)
T ss_pred CCCchhHHHHHHHHHHHHHH--------hhccC---hhHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCC------
Confidence 33334456677777777543 11111 345555555 6667777777777777777777766
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 000487 1199 EVHTQFAHTYLRLGMLLA 1216 (1463)
Q Consensus 1199 eV~~qlA~TYlnLG~LLq 1216 (1463)
+..+...--||+.|.+
T Consensus 296 --p~~L~~ve~Rl~~L~~ 311 (557)
T COG0497 296 --PNRLEEVEERLFALKS 311 (557)
T ss_pred --HHHHHHHHHHHHHHHH
Confidence 4455555555555543
No 169
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=49.62 E-value=1.7e+02 Score=38.60 Aligned_cols=202 Identities=15% Similarity=0.163 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhch
Q 000487 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNL 1129 (1463)
Q Consensus 1050 NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNL 1129 (1463)
.+..+.+|||+++...+ +-+-.|+-++.-|...+.=.+|.....+....-+.++|.+-+-
T Consensus 338 ~f~~lae~fE~~~~~~~--------------~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L------ 397 (799)
T KOG4162|consen 338 QFEVLAEQFEQALPFSF--------------GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL------ 397 (799)
T ss_pred HHHHHHHHHHHHhHhhh--------------hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH------
Confidence 45566677777775542 1233444555555555554555555555554444444433221
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHH
Q 000487 1130 GHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYL 1209 (1463)
Q Consensus 1130 G~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYl 1209 (1463)
.+++.|-+ + -+.+.+++.| -++|+.-++.-+ ---.+-.|+
T Consensus 398 -masklc~e----~----------l~~~eegldY----A~kai~~~~~~~---------------------~~l~~~~~l 437 (799)
T KOG4162|consen 398 -MASKLCIE----R----------LKLVEEGLDY----AQKAISLLGGQR---------------------SHLKPRGYL 437 (799)
T ss_pred -HHHHHHHh----c----------hhhhhhHHHH----HHHHHHHhhhhh---------------------hhhhhhHHH
Confidence 11222211 1 1355667777 666777554443 233566888
Q ss_pred HHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHHHHhhhchhhhhHHHHHHHHHhhhh---h
Q 000487 1210 RLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQ---R 1286 (1463)
Q Consensus 1210 nLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALkLyEslG~L~kqeAAyah~qLAs~y---r 1286 (1463)
.+|..|.-+..- .|.+..|+.+-++.+ +++++|++.--.+ |+ +-|.||-.| |
T Consensus 438 ~lGi~y~~~A~~--------------a~~~seR~~~h~ksl---qale~av~~d~~d-p~-------~if~lalq~A~~R 492 (799)
T KOG4162|consen 438 FLGIAYGFQARQ--------------ANLKSERDALHKKSL---QALEEAVQFDPTD-PL-------VIFYLALQYAEQR 492 (799)
T ss_pred HHHHHHHhHhhc--------------CCChHHHHHHHHHHH---HHHHHHHhcCCCC-ch-------HHHHHHHHHHHHH
Confidence 888888766552 233445566666666 6777766543222 22 223333222 1
Q ss_pred h------HHHHhhhcccccCCCCCCchhHHHHHHHhhhH-----HHHHHHHHHhhhCC------CCCchhHHHHHhhcc
Q 000487 1287 D------CFLKFLESDHKKNNLPKGENSFVHRVRQYASL-----AERNWQKAMDFYGP------RSHPTMYLTILMERS 1348 (1463)
Q Consensus 1287 d------~cLr~Le~d~k~e~~~K~~~~~iq~ak~y~sL-----Ae~nyqKAle~Y~p------~~hp~~~L~IlmERs 1348 (1463)
+ .|-+++++..+ . -+ +-+.-| |.+.|+.|+++... .||.-|+.+|.+|..
T Consensus 493 ~l~sAl~~~~eaL~l~~~------~---~~---~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 493 QLTSALDYAREALALNRG------D---SA---KAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT 559 (799)
T ss_pred hHHHHHHHHHHHHHhcCC------c---cH---HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence 1 45677766422 1 11 122222 55568888887654 366779999988764
No 170
>PLN02789 farnesyltranstransferase
Probab=49.37 E-value=5.2e+02 Score=30.70 Aligned_cols=44 Identities=9% Similarity=-0.118 Sum_probs=24.2
Q ss_pred hhhchhhHHHHHH-HHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHH
Q 000487 1085 VCNEMGRIRLERK-EMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRR 1134 (1463)
Q Consensus 1085 v~NELG~~ymeq~-nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR 1134 (1463)
||+.-|.+....+ .+.+++.+++++|.. ++.| .-+..+.|-+..
T Consensus 73 aW~~R~~iL~~L~~~l~eeL~~~~~~i~~-----npkn-yqaW~~R~~~l~ 117 (320)
T PLN02789 73 VWHFRRLCLEALDADLEEELDFAEDVAED-----NPKN-YQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHH-----CCcc-hHHhHHHHHHHH
Confidence 4444444443333 578888888888864 3333 234555554443
No 171
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=48.71 E-value=2.2e+02 Score=33.47 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=33.0
Q ss_pred hHHHHHHhhhhhhhchhhHH--HHHHHHHHHHHHHHHHHHHHHhccCcc
Q 000487 1074 ELQSVLKKKGWVCNEMGRIR--LERKEMEKGEHAFANAINAFKEVSDYT 1120 (1463)
Q Consensus 1074 e~~svlKKiGnv~NELG~~y--meq~nlkKAe~afekAI~aF~eV~D~t 1120 (1463)
|+..++-.+|=++..+|... -..+.++.|..+|.+|.-+|+-+.+..
T Consensus 105 E~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~l~~~~ 153 (377)
T PF03097_consen 105 EKACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQYLRENF 153 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445555555555555543 134789999999999999999998873
No 172
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=48.05 E-value=19 Score=27.02 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=25.1
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 000487 1085 VCNEMGRIRLERKEMEKGEHAFANAINAF 1113 (1463)
Q Consensus 1085 v~NELG~~ymeq~nlkKAe~afekAI~aF 1113 (1463)
|...+|.++...+++.+|...|++-|+-|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 56678999999999999999999988765
No 173
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=47.97 E-value=74 Score=29.70 Aligned_cols=24 Identities=8% Similarity=-0.035 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 000487 1093 RLERKEMEKGEHAFANAINAFKEV 1116 (1463)
Q Consensus 1093 ymeq~nlkKAe~afekAI~aF~eV 1116 (1463)
+...+++..++..+.+++......
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~ 200 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDD 200 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCccc
Confidence 444455555555555555444443
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=47.87 E-value=22 Score=32.60 Aligned_cols=45 Identities=22% Similarity=0.190 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHH
Q 000487 1057 CYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANA 1109 (1463)
Q Consensus 1057 CYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekA 1109 (1463)
=|++|+.++.. .....+-..+..-+|..+++.+.+++|+.+|+++
T Consensus 40 ~y~~A~~~~~~--------~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 40 KYEEAIELLQK--------LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHC--------HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 36677777621 2233333556667789999999999999999875
No 175
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.57 E-value=1.4e+02 Score=35.28 Aligned_cols=70 Identities=17% Similarity=0.169 Sum_probs=43.7
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 000487 1084 WVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALET 1163 (1463)
Q Consensus 1084 nv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ 1163 (1463)
.+|.||.-+|+..+.|+||.-|+|+-+ .-.+.|-. ..+.+|+..-.++- -.++.-|.++
T Consensus 155 EAW~eLaeiY~~~~~f~kA~fClEE~l-----l~~P~n~l--------~f~rlae~~Yt~gg--------~eN~~~arky 213 (289)
T KOG3060|consen 155 EAWHELAEIYLSEGDFEKAAFCLEELL-----LIQPFNPL--------YFQRLAEVLYTQGG--------AENLELARKY 213 (289)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHH-----HcCCCcHH--------HHHHHHHHHHHHhh--------HHHHHHHHHH
Confidence 478888888888888888888888876 23344432 23445563322210 1344455555
Q ss_pred hHHHHHHHHHHHHHH
Q 000487 1164 AKLEYCESLRYYRAA 1178 (1463)
Q Consensus 1164 ak~eY~kAL~~y~~a 1178 (1463)
|.+||++-+..
T Consensus 214 ----y~~alkl~~~~ 224 (289)
T KOG3060|consen 214 ----YERALKLNPKN 224 (289)
T ss_pred ----HHHHHHhChHh
Confidence 99999887743
No 176
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=47.56 E-value=1.5e+02 Score=30.91 Aligned_cols=94 Identities=17% Similarity=0.209 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhH----HHHHHHHHHHHHHHHHHHHHHHhccCcccchh
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRI----RLERKEMEKGEHAFANAINAFKEVSDYTNIIL 1124 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~----ymeq~nlkKAe~afekAI~aF~eV~D~tNiAL 1124 (1463)
-|..+|++.-|...-.-+. ...---+.+..|.+|.+|+.. .+...-+..|..+|.+++...-.-
T Consensus 10 GnhiKAL~iied~i~~h~~----~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~-------- 77 (111)
T PF04781_consen 10 GNHIKALEIIEDLISRHGE----DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS-------- 77 (111)
T ss_pred cCHHHHHHHHHHHHHHccC----CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH--------
Confidence 4677888888887755421 111115788889999999988 555678888999999988554332
Q ss_pred hhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 000487 1125 INCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRY 1174 (1463)
Q Consensus 1125 iyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~ 1174 (1463)
.++.-.||+...+. .+|+|++.. -+|+|.|
T Consensus 78 -----A~~L~~la~~l~s~-----------~~Ykk~v~k----ak~~Lsv 107 (111)
T PF04781_consen 78 -----AHSLFELASQLGSV-----------KYYKKAVKK----AKRGLSV 107 (111)
T ss_pred -----HHHHHHHHHHhhhH-----------HHHHHHHHH----HHHHhcc
Confidence 45555555555554 689999988 6667654
No 177
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=47.56 E-value=33 Score=42.13 Aligned_cols=109 Identities=17% Similarity=0.292 Sum_probs=70.1
Q ss_pred CCCChhhhHHHHHHH--HHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 000487 1043 VVGDAENNLSSALSC--YEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYT 1120 (1463)
Q Consensus 1043 ~~~D~E~NL~~AleC--YeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~t 1120 (1463)
.++|.+..+.=|++| .+.|+++...++... .|..||...|.+++++-|+.|| ++.+|..
T Consensus 317 ~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~------------~W~~Lg~~AL~~g~~~lAe~c~-------~k~~d~~ 377 (443)
T PF04053_consen 317 FVTDPDHRFELALQLGNLDIALEIAKELDDPE------------KWKQLGDEALRQGNIELAEECY-------QKAKDFS 377 (443)
T ss_dssp HSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHH------------HHHHHHHHHHHTTBHHHHHHHH-------HHCT-HH
T ss_pred hcCChHHHhHHHHhcCCHHHHHHHHHhcCcHH------------HHHHHHHHHHHcCCHHHHHHHH-------HhhcCcc
Confidence 477888888888887 678888874433111 7889999999999998888765 4568999
Q ss_pred cchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHH--HHHHHHHHHHHHh
Q 000487 1121 NIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKL--EYCESLRYYRAAK 1179 (1463)
Q Consensus 1121 NiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~--eY~kAL~~y~~aK 1179 (1463)
.+.++|.-.|..-.. ++++..-+. ++.+|-|+.+|=+ .+.+.++++.+.+
T Consensus 378 ~L~lLy~~~g~~~~L------~kl~~~a~~---~~~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 378 GLLLLYSSTGDREKL------SKLAKIAEE---RGDINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHHCT-HHHH------HHHHHHHHH---TT-HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred ccHHHHHHhCCHHHH------HHHHHHHHH---ccCHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 999999888875222 222211111 2677777777332 2456666666655
No 178
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=47.44 E-value=1e+03 Score=33.62 Aligned_cols=72 Identities=21% Similarity=0.146 Sum_probs=34.8
Q ss_pred HHHHhccCcccchhhh-hchhhHHH---HHHH--HHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 000487 1111 NAFKEVSDYTNIILIN-CNLGHGRR---ALAE--EMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNS 1184 (1463)
Q Consensus 1111 ~aF~eV~D~tNiALiy-CNLG~~yR---~LAe--e~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~ 1184 (1463)
++-+.|.-..||-.|. ---|.+.| ++++ .-.++.+..+.. .+....||+.|...|.+|-..+..+.+-+.-
T Consensus 1519 ~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~---ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~ 1595 (1758)
T KOG0994|consen 1519 EIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQ---AEDVVEALEEADVAQGEAQDAIQGADRDIRL 1595 (1758)
T ss_pred HHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4556666667754333 22344433 3333 122222222222 2555667777666666666666555543333
Q ss_pred h
Q 000487 1185 L 1185 (1463)
Q Consensus 1185 ~ 1185 (1463)
+
T Consensus 1596 a 1596 (1758)
T KOG0994|consen 1596 A 1596 (1758)
T ss_pred H
Confidence 3
No 179
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=47.21 E-value=98 Score=37.62 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=40.0
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhc-------hhhHHHHHHH
Q 000487 1082 KGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN-------LGHGRRALAE 1138 (1463)
Q Consensus 1082 iGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCN-------LG~~yR~LAe 1138 (1463)
++--|-|=|..||.-+.|+.|..+|.+||+ ++-.|+.=-|.+|.| ||..|++|-.
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk--~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~D 141 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLK--KKCADPDLNAVLYTNRAAAQLYLGNYRSALND 141 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHh--hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 444455666788999999999999999996 456666656777776 5666666544
No 180
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=46.76 E-value=24 Score=27.01 Aligned_cols=29 Identities=34% Similarity=0.575 Sum_probs=25.7
Q ss_pred hhhhhhhHhhhhhhHHHHHHHHHHHHHhh
Q 000487 747 ESYLALGQAYKEDGQLHQALKTVELACSV 775 (1463)
Q Consensus 747 esyl~lg~ayked~ql~~~lk~velac~v 775 (1463)
++|..||++|..-|++.+|++..+.+..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57889999999999999999999888765
No 181
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=46.56 E-value=2.6e+02 Score=31.55 Aligned_cols=218 Identities=16% Similarity=0.118 Sum_probs=107.3
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccch---hhhh-c-hhhHHHHHHHHHHhhh-hhhhhhh--hhHHHH
Q 000487 1086 CNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNII---LINC-N-LGHGRRALAEEMVSKV-ESLKIHT--IFQNMY 1157 (1463)
Q Consensus 1086 ~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiA---LiyC-N-LG~~yR~LAee~~sk~-~~~k~~~--~~q~~Y 1157 (1463)
...|.+.++..++-..|+.-|.+=|..|+.+.+....+ ..+. + +.+=|+.+||-+..-. ..+..-. .|--.|
T Consensus 13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy 92 (247)
T PF11817_consen 13 AFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYY 92 (247)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHH
Confidence 34567888888999999999999999999999884432 2222 1 5566777777443331 1111110 011233
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhhh-hhccccccchhhHHHHHHHHHHHHHHhhhhccchhhhhcccccccCCCC
Q 000487 1158 KQALETAKLEYCESLRYYRAAKLQLNSLVE-EAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVP 1236 (1463)
Q Consensus 1158 nKALe~ak~eY~kAL~~y~~aK~~l~~~~~-~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~ 1236 (1463)
.+|-.+ ...++.-...+-. +.......+-..++.+. +| .++.--.++-+ ..
T Consensus 93 ~~AA~~-----------~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~--------------~~ 144 (247)
T PF11817_consen 93 QIAAKH-----------AVERRKLAEAIPPDPDSSPASSVVPSFYGYD--TY-SLPPSPHEEYP--------------LL 144 (247)
T ss_pred HHHHHH-----------HHHHHHHHHhccCCCCCCchhhccchhhccc--cc-ccCchhHHHHH--------------hh
Confidence 344433 4444422222210 00111111111111000 00 00001111111 11
Q ss_pred cccchhhhhhhccccHHHHHHHHHHHHhhhchhhhhHHHHHHHHHhhhhhhH--H---HHhhhcccccCCCCCCchhHHH
Q 000487 1237 CEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQRDC--F---LKFLESDHKKNNLPKGENSFVH 1311 (1463)
Q Consensus 1237 ~t~~~~eeleK~eIsa~Dai~eALkLyEslG~L~kqeAAyah~qLAs~yrd~--c---Lr~Le~d~k~e~~~K~~~~~iq 1311 (1463)
.......+-.+..| +.+.+|...|..-| ..+-+.++-.+||.-|-.. + +++++... ..+.
T Consensus 145 ~~~e~~~~hs~~iI---~lL~~A~~~f~~~~--~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~---------~~yr- 209 (247)
T PF11817_consen 145 QSEEKGVDHSKLII---ELLEKAYEQFKKYG--QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAA---------SSYR- 209 (247)
T ss_pred hccccccchHHHHH---HHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------HHHH-
Confidence 11123455667888 99999999999998 3444555555666443331 0 11111110 1111
Q ss_pred HHHHhhhHHHHHHHHHHhhhCCCCCchhHHHHHhhc
Q 000487 1312 RVRQYASLAERNWQKAMDFYGPRSHPTMYLTILMER 1347 (1463)
Q Consensus 1312 ~ak~y~sLAe~nyqKAle~Y~p~~hp~~~L~IlmER 1347 (1463)
...+-.|....-.+..+++.....+.+|+++-+|=
T Consensus 210 -~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 210 -REGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred -hCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 12233455555667777777777788887776653
No 182
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=46.39 E-value=2.9e+02 Score=33.02 Aligned_cols=136 Identities=15% Similarity=0.155 Sum_probs=76.7
Q ss_pred chhhHHHHHHHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHHHHhhhch-------
Q 000487 1196 LRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGD------- 1268 (1463)
Q Consensus 1196 LwdeV~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALkLyEslG~------- 1268 (1463)
--.++..+.+.++||+|.++..... + . + +.+.+.+ |.++ .++++|--.++-+.+
T Consensus 97 ~~~~l~fEka~VLfNigal~sq~a~-~---~-----~------~~~~~gl-K~A~---~~fq~AAG~F~~l~~~~~~~~~ 157 (355)
T cd09241 97 SLSSLKFERANILYNLGALYSQLAL-S---E-----N------RYTDEGL-KRAC---SYFQASAGCFEYILQHLLPTLS 157 (355)
T ss_pred eeccHHHHHHHHHHHHHHHHHHHHH-H---c-----C------CCChHHH-HHHH---HHHHHHHHHHHHHHHhcccccC
Confidence 3456889999999999999986654 1 1 0 0011222 4444 777777666554421
Q ss_pred ----h-hhhHHHHHHHHHhhhhhhHHHHhhhcccccCCCCCCchhHHHHHHHhhhHHHHHHHHHHhhhCCC-CCchhHHH
Q 000487 1269 ----L-RKQEAAYAYFQLACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGPR-SHPTMYLT 1342 (1463)
Q Consensus 1269 ----L-~kqeAAyah~qLAs~yrd~cLr~Le~d~k~e~~~K~~~~~iq~ak~y~sLAe~nyqKAle~Y~p~-~hp~~~L~ 1342 (1463)
+ ..--.++...+||..|--.+.|+..-. .| ++.+ | .-+.-+-.+|++|.+..... .-+..|..
T Consensus 158 ~s~Dl~~~~l~~L~~lmLAQAQE~~~~Kai~~~------~k--~sli--A-KLa~qv~~~Y~~a~~~l~~~~~i~~~W~~ 226 (355)
T cd09241 158 PPPDLDENTLKALESLMLAQAQECFWQKAISDG------TK--DSLI--A-KLAAQVSDYYQEALKYANKSDLIRSDWIN 226 (355)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC------Cc--chHH--H-HHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 0 111235666677755555556664322 12 3344 2 33444566799999998843 33456666
Q ss_pred HHhhccchhhhhcccchhH
Q 000487 1343 ILMERSDLSFRLSCFLHSN 1361 (1463)
Q Consensus 1343 IlmERsAL~~~~st~~~S~ 1361 (1463)
.+--.+..|..++...++.
T Consensus 227 ~v~~K~~~f~A~A~y~~a~ 245 (355)
T cd09241 227 HLKVKKHHFKAAAHYRMAL 245 (355)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6655555555554444443
No 183
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=45.30 E-value=42 Score=37.62 Aligned_cols=80 Identities=9% Similarity=0.103 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhc
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCN 1128 (1463)
..-...|++++.|...+ ......|-..-+.-+||..|+..|+|.+|..+|+.....|++.+=.. +...
T Consensus 152 ~hs~~iI~lL~~A~~~f--------~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~----l~~~ 219 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQF--------KKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWS----LLTE 219 (247)
T ss_pred chHHHHHHHHHHHHHHH--------HHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHH----HHHH
Confidence 34456788888888887 34444666677777999999999999999999999999999876653 3334
Q ss_pred hhhHHHHHHHHH
Q 000487 1129 LGHGRRALAEEM 1140 (1463)
Q Consensus 1129 LG~~yR~LAee~ 1140 (1463)
+....+.||..+
T Consensus 220 ~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 220 VLWRLLECAKRL 231 (247)
T ss_pred HHHHHHHHHHHh
Confidence 444445555533
No 184
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=44.25 E-value=6.3e+02 Score=30.21 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=33.7
Q ss_pred HHHHHhhhhhhhchhhHHHHH---------HHHHHHHHHHHHHHHHHHhccCcc
Q 000487 1076 QSVLKKKGWVCNEMGRIRLER---------KEMEKGEHAFANAINAFKEVSDYT 1120 (1463)
Q Consensus 1076 ~svlKKiGnv~NELG~~ymeq---------~nlkKAe~afekAI~aF~eV~D~t 1120 (1463)
.++.--+++|..++|..+-+. +.++.|..+|..|.-+|+-+.++.
T Consensus 112 ~~l~fEka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F~~l~e~~ 165 (346)
T cd09240 112 SSLGYEKVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFNHLKETV 165 (346)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555666667777665442 558999999999999999998864
No 185
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=44.01 E-value=5e+02 Score=30.10 Aligned_cols=84 Identities=17% Similarity=0.149 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhhc-h--hhhhHHHHHHHHHhhhhhhHHHHhhhcccccCCCCCCchhHHHHHHHhhhHHHHHHHHHHhh
Q 000487 1254 DAIREALSLYESMG-D--LRKQEAAYAYFQLACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDF 1330 (1463)
Q Consensus 1254 Dai~eALkLyEslG-~--L~kqeAAyah~qLAs~yrd~cLr~Le~d~k~e~~~K~~~~~iq~ak~y~sLAe~nyqKAle~ 1330 (1463)
+.+.+.|.+.+..- | -..---.|-+-.-|.|||+.|- +...+.+ +....-|...|++|++.
T Consensus 94 ~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE-~~~~~e~---------------~~~~~~a~~aY~~A~e~ 157 (244)
T smart00101 94 KICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAE-FKTGAER---------------KEAAENTLVAYKSAQDI 157 (244)
T ss_pred HHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHH-HcCcHHH---------------HHHHHHHHHHHHHHHHH
Confidence 66667777766542 1 1112237777899999999843 3222211 23344559999999999
Q ss_pred hCC---CCCchhHHHHHhhccchhhhh
Q 000487 1331 YGP---RSHPTMYLTILMERSDLSFRL 1354 (1463)
Q Consensus 1331 Y~p---~~hp~~~L~IlmERsAL~~~~ 1354 (1463)
-.. .+||. .|-+.++-|-++.-+
T Consensus 158 a~~~L~pt~Pi-rLgLaLN~SVF~yEI 183 (244)
T smart00101 158 ALAELPPTHPI-RLGLALNFSVFYYEI 183 (244)
T ss_pred HHccCCCCCHH-HHHHHHHHHHHHHHH
Confidence 654 47776 344555554444443
No 186
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=42.72 E-value=27 Score=29.06 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=26.4
Q ss_pred hhhhhhhHhhhhhhHHHHHHHHHHHHHhhh
Q 000487 747 ESYLALGQAYKEDGQLHQALKTVELACSVY 776 (1463)
Q Consensus 747 esyl~lg~ayked~ql~~~lk~velac~vy 776 (1463)
+.++.||++|.+-||+.+|.++.+-+....
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999999887754
No 187
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=41.90 E-value=9.3e+02 Score=32.57 Aligned_cols=209 Identities=23% Similarity=0.228 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhh----HHHHHHHHHHHHHHHHHHHHHHHhccCcccchh
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGR----IRLERKEMEKGEHAFANAINAFKEVSDYTNIIL 1124 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~----~ymeq~nlkKAe~afekAI~aF~eV~D~tNiAL 1124 (1463)
.||..|-.||-+--++. + -..+..+++---.|-.|+|- +|--+..+.--++-|..|-.+|-+.+|..--+.
T Consensus 491 ~nl~iaercfaai~dva-k----~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~kkfk~ae~ifleqn~te~aig 565 (1636)
T KOG3616|consen 491 GNLFIAERCFAAIGDVA-K----ARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILEKKFKEAEMIFLEQNATEEAIG 565 (1636)
T ss_pred ccchHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHhhhhHHHHHHHhcccHHHHHH
Confidence 68888999997554443 0 11333444433444555542 233334444444555555556666666555555
Q ss_pred hhhchhhHHHHHHHH-------------------H----HhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 000487 1125 INCNLGHGRRALAEE-------------------M----VSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQ 1181 (1463)
Q Consensus 1125 iyCNLG~~yR~LAee-------------------~----~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~ 1181 (1463)
.|..|-+--.++|-- | .++...+|+- ++.-.-|++. |.+|=.=..+++.-
T Consensus 566 my~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s---dgd~laaiql----yika~~p~~a~~~a 638 (1636)
T KOG3616|consen 566 MYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKES---DGDGLAAIQL----YIKAGKPAKAARAA 638 (1636)
T ss_pred HHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhccc---cCccHHHHHH----HHHcCCchHHHHhh
Confidence 555443322222110 0 1111233333 2444456666 77765555555532
Q ss_pred hhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHH
Q 000487 1182 LNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALS 1261 (1463)
Q Consensus 1182 l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALk 1261 (1463)
++. +.-... .++..+++.++ --|.||.+-..+ |+ +. -+-++..|=-+|- |||.||+.
T Consensus 639 ~n~---~~l~~d----e~il~~ia~al-ik~elydkagdl---fe-----ki--~d~dkale~fkkg-----daf~kaie 695 (1636)
T KOG3616|consen 639 LND---EELLAD----EEILEHIAAAL-IKGELYDKAGDL---FE-----KI--HDFDKALECFKKG-----DAFGKAIE 695 (1636)
T ss_pred cCH---HHhhcc----HHHHHHHHHHH-HhhHHHHhhhhH---HH-----Hh--hCHHHHHHHHHcc-----cHHHHHHH
Confidence 222 111111 12445555544 346777666653 33 11 2234445555555 88888887
Q ss_pred HHhhh------------c----hhhhhHHHHHHHHHhhhhhhHHHHhhhcc
Q 000487 1262 LYESM------------G----DLRKQEAAYAYFQLACYQRDCFLKFLESD 1296 (1463)
Q Consensus 1262 LyEsl------------G----~L~kqeAAyah~qLAs~yrd~cLr~Le~d 1296 (1463)
|...- | ..-|+.||.-||-=| .|-.|+.+..
T Consensus 696 larfafp~evv~lee~wg~hl~~~~q~daainhfiea----~~~~kaieaa 742 (1636)
T KOG3616|consen 696 LARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA----NCLIKAIEAA 742 (1636)
T ss_pred HHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh----hhHHHHHHHH
Confidence 76532 3 244677888888877 5555555443
No 188
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=40.55 E-value=3.8e+02 Score=30.56 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHH-------hccCcccchhhhhchhhHHHHHHH
Q 000487 1097 KEMEKGEHAFANAINAFK-------EVSDYTNIILINCNLGHGRRALAE 1138 (1463)
Q Consensus 1097 ~nlkKAe~afekAI~aF~-------eV~D~tNiALiyCNLG~~yR~LAe 1138 (1463)
++|..|...|..+|.-|. .+.|...|+-+....|.+.+.+..
T Consensus 33 k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~ 81 (207)
T cd07636 33 KNLSSAKRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLED 81 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 688899999999999999 677888888888888888777655
No 189
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=40.51 E-value=2.5e+02 Score=37.11 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcccchhhhhchh
Q 000487 1097 KEMEKGEHAFANAINAFKEVSDYTNIILINCNLG 1130 (1463)
Q Consensus 1097 ~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG 1130 (1463)
+++--+.-+-..|+.+|+.+.=-.++|+|||-+|
T Consensus 405 aell~slGitksAl~I~Erlemw~~vi~CY~~lg 438 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFERLEMWDPVILCYLLLG 438 (777)
T ss_pred HHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4555556666778888888888888888888888
No 190
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=39.83 E-value=25 Score=39.59 Aligned_cols=77 Identities=26% Similarity=0.398 Sum_probs=56.7
Q ss_pred cccceeeeccCCCCCChh-hhHHHHHHHHHHHHHHhcC--CCCchhhHHHHHHhhhhhhhchhhHHHHH-----HHHHHH
Q 000487 1031 KNGGIFKYLEDPVVGDAE-NNLSSALSCYEEAVKALGG--LPTVSAELQSVLKKKGWVCNEMGRIRLER-----KEMEKG 1102 (1463)
Q Consensus 1031 ~~GgiFkyL~~~~~~D~E-~NL~~AleCYeeALkal~~--l~~~~ae~~svlKKiGnv~NELG~~ymeq-----~nlkKA 1102 (1463)
-+|.+|.||.+..+|+.- .--..|++-|.+|-++..+ .|+++. |+|-+.| ..+||++. +-+.-|
T Consensus 125 MKGDYyRYlAEf~~G~~~~e~a~~slE~YK~AseiA~teLpPT~Pi-------rLGLALN-fSVFyYEIlnspdkAC~lA 196 (268)
T COG5040 125 MKGDYYRYLAEFSVGEAREEAADSSLEAYKAASEIATTELPPTHPI-------RLGLALN-FSVFYYEILNSPDKACHLA 196 (268)
T ss_pred ecchHHHHHHHhccchHhHHHHHhHHHHHHHHHHHhhccCCCCCch-------hhhheec-ceeeeeecccCcHHHHHHH
Confidence 369999999999999865 4556789999999998744 455553 5677665 57787774 566677
Q ss_pred HHHHHHHHHHHHh
Q 000487 1103 EHAFANAINAFKE 1115 (1463)
Q Consensus 1103 e~afekAI~aF~e 1115 (1463)
-.+|.+||.-...
T Consensus 197 KqaFDeAI~ELDt 209 (268)
T COG5040 197 KQAFDEAISELDT 209 (268)
T ss_pred HHHHHHHHHHHhh
Confidence 7888888865443
No 191
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.16 E-value=2.5e+02 Score=34.59 Aligned_cols=61 Identities=18% Similarity=0.145 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccch
Q 000487 1052 SSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNII 1123 (1463)
Q Consensus 1052 ~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiA 1123 (1463)
.++-..|+++++.+ |++..+.-..+ +=|++++..+.|.+|...|.-+-.+|+.--|..|+.
T Consensus 38 ~~~~~~y~Q~~q~~---kk~~~~il~~L--------~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S 98 (449)
T COG3014 38 ESPKKAYEQSKQFT---KKKKNALLWDL--------QNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSAS 98 (449)
T ss_pred hcchhHHHHHHHhh---hhhhHHHHHhh--------hhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheec
Confidence 35567788888765 33333222222 338899999999999999999999999999988864
No 192
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=38.99 E-value=64 Score=36.64 Aligned_cols=87 Identities=16% Similarity=0.310 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccc---chhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHH-HHHHHHHHhHHHH
Q 000487 1093 RLERKEMEKGEHAFANAINAFKEVSDYTN---IILINCNLGHGRRALAEEMVSKVESLKIHTIFQN-MYKQALETAKLEY 1168 (1463)
Q Consensus 1093 ymeq~nlkKAe~afekAI~aF~eV~D~tN---iALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~-~YnKALe~ak~eY 1168 (1463)
.+.+++++.|+.+|.|+-..-. .-|+.. ++.++.|+|.-... + + .|..|+.. -
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~-------~-----------~~~~~~a~~w----L 59 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLS-------K-----------KDKYEEAVKW----L 59 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHH-------c-----------CCChHHHHHH----H
Confidence 4678999999999999876553 333332 56666666655433 2 4 78889888 9
Q ss_pred HHHHHHHHH-HhhhhhhhhhhhccccccchhhHHHHHHHHH
Q 000487 1169 CESLRYYRA-AKLQLNSLVEEAGSVSNSLRMEVHTQFAHTY 1208 (1463)
Q Consensus 1169 ~kAL~~y~~-aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TY 1208 (1463)
++|++|+.. .+ .+.......+++-.|...+|.+|
T Consensus 60 ~~a~~~l~~~~~------~~~~~~~~~elr~~iL~~La~~~ 94 (278)
T PF08631_consen 60 QRAYDILEKPGK------MDKLSPDGSELRLSILRLLANAY 94 (278)
T ss_pred HHHHHHHHhhhh------ccccCCcHHHHHHHHHHHHHHHH
Confidence 999999977 43 11222232345555555555555
No 193
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=38.93 E-value=11 Score=30.56 Aligned_cols=33 Identities=21% Similarity=0.495 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHH
Q 000487 1057 CYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGE 1103 (1463)
Q Consensus 1057 CYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe 1103 (1463)
||++|++.- | .-..+|+.||.+|..+|++.+|+
T Consensus 1 ~y~kAie~~---P-----------~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELN---P-----------NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHC---C-----------CCHHHHHHHHHHHHHCcCHHhhc
Confidence 677787663 2 22457788888888888887775
No 194
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=38.78 E-value=55 Score=39.83 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=22.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Q 000487 1088 EMGRIRLERKEMEKGEHAFANAINAF 1113 (1463)
Q Consensus 1088 ELG~~ymeq~nlkKAe~afekAI~aF 1113 (1463)
|=|.-||.||-|++|++||.+||.+.
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~ 127 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVY 127 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccC
Confidence 45667899999999999999999763
No 195
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=38.76 E-value=35 Score=37.28 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHH
Q 000487 1054 ALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAI 1110 (1463)
Q Consensus 1054 AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI 1110 (1463)
|..||..|..++ =..|+.||-||+++..+++.-.|.=+|-+|+
T Consensus 1 A~~~Y~~A~~l~--------------P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 1 AERYYRKAIRLL--------------PSNGNPYNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHHHH---------------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC--------------CCCCCcccchhhhhccccchHHHHHHHHHHH
Confidence 789999999775 3579999999999999988888888888888
No 196
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=38.18 E-value=3e+02 Score=31.29 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=41.0
Q ss_pred HHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHH-------hccCcccchhhhhchhhHHHHHHH
Q 000487 1076 QSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFK-------EVSDYTNIILINCNLGHGRRALAE 1138 (1463)
Q Consensus 1076 ~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~-------eV~D~tNiALiyCNLG~~yR~LAe 1138 (1463)
.+-++++-.-|+.|=- .-++|..|...|..+|..|. ..+|..+|+-+....|.+...+..
T Consensus 15 ~~~ikkLiK~ck~~i~---a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~ 81 (207)
T cd07602 15 NKAIKELIKECKNLIS---ATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVED 81 (207)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443311 13788999999999999999 456667788877778877766655
No 197
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=37.79 E-value=5.4e+02 Score=30.78 Aligned_cols=48 Identities=17% Similarity=0.092 Sum_probs=29.0
Q ss_pred HHHHHhhhC--CC--CCchhHHHHHhhccchhhhhcccchhHHHHHHHHHHHHc
Q 000487 1324 WQKAMDFYG--PR--SHPTMYLTILMERSDLSFRLSCFLHSNAMLETALSCLLE 1373 (1463)
Q Consensus 1324 yqKAle~Y~--p~--~hp~~~L~IlmERsAL~~~~st~~~S~vmLe~aL~~mLe 1373 (1463)
|.||.++|. .+ .+|+... ...-+.+++.+.......-+.+.+|.-++.
T Consensus 351 ~~~A~~~le~a~a~~~~p~~~~--~~~La~ll~~~g~~~~A~~~~~~~l~~~~~ 402 (409)
T TIGR00540 351 FIEAADAFKNVAACKEQLDAND--LAMAADAFDQAGDKAEAAAMRQDSLGLMLA 402 (409)
T ss_pred HHHHHHHHHHhHHhhcCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 899999998 34 4676543 224456666644444444477777766553
No 198
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=37.43 E-value=4.6e+02 Score=34.51 Aligned_cols=102 Identities=12% Similarity=0.024 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHHHHhhhchhhhhHHHHHHHHHh
Q 000487 1203 QFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLA 1282 (1463)
Q Consensus 1203 qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALkLyEslG~L~kqeAAyah~qLA 1282 (1463)
+-+..++.+|++|+.-.. |+ +++ ++|+++++ ...+- +-++..+|
T Consensus 152 ~~~~~~~~~a~~l~~~g~----~~---------------------~A~---~~y~~~~~-~~p~~-------~~~~~~~a 195 (694)
T PRK15179 152 SSAREILLEAKSWDEIGQ----SE---------------------QAD---ACFERLSR-QHPEF-------ENGYVGWA 195 (694)
T ss_pred CCHHHHHHHHHHHHHhcc----hH---------------------HHH---HHHHHHHh-cCCCc-------HHHHHHHH
Confidence 447888999999998888 66 445 88888887 22221 44444455
Q ss_pred hhhhh---------HHHHhhhcccccCCCCCCchhHHHHHHHhhhH-HHHHH-HHHHhhhCCCCCch-hHHH-HHhhccc
Q 000487 1283 CYQRD---------CFLKFLESDHKKNNLPKGENSFVHRVRQYASL-AERNW-QKAMDFYGPRSHPT-MYLT-ILMERSD 1349 (1463)
Q Consensus 1283 s~yrd---------~cLr~Le~d~k~e~~~K~~~~~iq~ak~y~sL-Ae~ny-qKAle~Y~p~~hp~-~~L~-IlmERsA 1349 (1463)
..++. +|.++++.... + +|.|..+ +++|= =.+++=++++..|. .=++ |-|+.+-
T Consensus 196 ~~l~~~G~~~~A~~~~~~a~~~~~~------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (694)
T PRK15179 196 QSLTRRGALWRARDVLQAGLDAIGD------G-------ARKLTRRLVDLNADLAALRRLGVEGDGRDVPVSILVLEKML 262 (694)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhhCc------c-------hHHHHHHHHHHHHHHHHHHHcCcccccCCCceeeeeHHHHH
Confidence 44432 66777666632 1 1222222 33331 13455667775544 3333 4456555
Q ss_pred hhhh
Q 000487 1350 LSFR 1353 (1463)
Q Consensus 1350 L~~~ 1353 (1463)
+.+.
T Consensus 263 ~~~~ 266 (694)
T PRK15179 263 QEIG 266 (694)
T ss_pred HHHh
Confidence 5443
No 199
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=37.40 E-value=1.1e+02 Score=40.22 Aligned_cols=51 Identities=25% Similarity=0.169 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAF 1113 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF 1113 (1463)
.|...|..|-.+|.++. .-..|+|+..|+.+..++.+.+|..+|-.|+.+.
T Consensus 664 ~~~~~a~~CL~Ea~~~~--------------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 664 GNDDEARSCLLEASKID--------------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred CCchHHHHHHHHHHhcc--------------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 34556778888888774 4578999999999999999999999999998653
No 200
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=37.36 E-value=7.5e+02 Score=31.54 Aligned_cols=51 Identities=24% Similarity=0.202 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHHHHhhhc-hhhhhHHHHHH
Q 000487 1201 HTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMG-DLRKQEAAYAY 1278 (1463)
Q Consensus 1201 ~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALkLyEslG-~L~kqeAAyah 1278 (1463)
.-+=|.++++||.+|-.+-. ++. -|..++.||+.+|++.+ .-.|+++++..
T Consensus 55 p~~ea~~~l~la~iL~~eT~---n~~------------------------~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll 106 (608)
T PF10345_consen 55 PRQEARVRLRLASILLEETE---NLD------------------------LAETYLEKAILLCERHRLTDLKFRCQFLL 106 (608)
T ss_pred HHHHHHHHHHHHHHHHHHcC---CHH------------------------HHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 45568899999999987765 222 24588999999999965 23355555544
No 201
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=37.26 E-value=34 Score=40.56 Aligned_cols=83 Identities=13% Similarity=0.118 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhc
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCN 1128 (1463)
.+...+++..+..++-. |. =.....-+|++++.+++|.+|..+|++++.. ++.+.. +.-
T Consensus 308 ~~~~~al~~~e~~lk~~---P~-----------~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-----~P~~~~--~~~ 366 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQH---GD-----------TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-----RPDAYD--YAW 366 (398)
T ss_pred CChHHHHHHHHHHHhhC---CC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCHHH--HHH
Confidence 34556777777766443 11 1224567899999999999999999999975 233322 223
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 000487 1129 LGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRY 1174 (1463)
Q Consensus 1129 LG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~ 1174 (1463)
|+.++.. ++.-.+|.++ |.++|..
T Consensus 367 La~~~~~------------------~g~~~~A~~~----~~~~l~~ 390 (398)
T PRK10747 367 LADALDR------------------LHKPEEAAAM----RRDGLML 390 (398)
T ss_pred HHHHHHH------------------cCCHHHHHHH----HHHHHhh
Confidence 4444444 2455678888 8888764
No 202
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=36.85 E-value=8.1e+02 Score=29.35 Aligned_cols=137 Identities=16% Similarity=0.278 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHHHHhhhc---------h
Q 000487 1198 MEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMG---------D 1268 (1463)
Q Consensus 1198 deV~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALkLyEslG---------~ 1268 (1463)
.++..+.+.++||+|.+|....... .. .-.+--|.++ .+++.|--+++-.. +
T Consensus 100 ~sl~fEka~VLfNiaal~s~~A~~~--~~--------------~~~~~~K~A~---~~fq~AAG~f~~l~e~~~~~ps~D 160 (348)
T cd09242 100 HSLAFEKASVLFNIGALLSQLAAEK--YR--------------EDEDDLKEAI---TNLQQAAGCFQYINENFLHAPSVD 160 (348)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHh--cc--------------CChHHHHHHH---HHHHHHHHHHHHHHHhcCCCCCcc
Confidence 5678899999999999998777611 11 1123345556 77777776665431 1
Q ss_pred hh-hhHHHHHHHHHhhhhhhHHHHhhhcccccCCCCCCchhHHHHHHHhhhHHHHHHHHHHhhhCCC--C----CchhHH
Q 000487 1269 LR-KQEAAYAYFQLACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGPR--S----HPTMYL 1341 (1463)
Q Consensus 1269 L~-kqeAAyah~qLAs~yrd~cLr~Le~d~k~e~~~K~~~~~iq~ak~y~sLAe~nyqKAle~Y~p~--~----hp~~~L 1341 (1463)
+. .--.+....+||-.|.-.+.|+..-.. ..++ .+.+ || -+.-+-.+|++|.+.+... . -+..|.
T Consensus 161 l~~~~l~~L~~lmLAQAQE~~~~Kai~~~~----~~~k-~sli--aK-La~~~~~~Y~~a~~~l~~~~~~~~~~~~~~W~ 232 (348)
T cd09242 161 LQQENVKFLVKLMLAQAQEIFLLKLINGDD----AQKK-ASLI--SK-LASATANLYESCVEFLKEIQEKGISYGDPKWI 232 (348)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCC----cccc-hHHH--HH-HHHHHHHHHHHHHHHHhccccccccccCHHHH
Confidence 11 112366667777666666667654220 0122 3444 32 3444556799999988742 2 255777
Q ss_pred HHHhhccchhhhhcccchhH
Q 000487 1342 TILMERSDLSFRLSCFLHSN 1361 (1463)
Q Consensus 1342 ~IlmERsAL~~~~st~~~S~ 1361 (1463)
.++.-.+.+|..++...++.
T Consensus 233 ~~~~~K~~~f~A~A~y~~a~ 252 (348)
T cd09242 233 SLVQCKAHYYKSLAAYYHAL 252 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77776776666555544443
No 203
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=35.86 E-value=5.5e+02 Score=30.79 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=34.1
Q ss_pred hHHHHHHhhhhhhhchhhHH--HHHHHHHHHHHHHHHHHHHHHhccCc
Q 000487 1074 ELQSVLKKKGWVCNEMGRIR--LERKEMEKGEHAFANAINAFKEVSDY 1119 (1463)
Q Consensus 1074 e~~svlKKiGnv~NELG~~y--meq~nlkKAe~afekAI~aF~eV~D~ 1119 (1463)
|+.+++=.+|=.+..||.-. ...+.++.|..+|..|.-+|+-+.|.
T Consensus 109 Eka~vlfNiaal~s~~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~e~ 156 (353)
T cd09246 109 EKAAVLFNLGALSSQLGLQQDRTTAEGIKQACHAFQAAAGAFAHLRDK 156 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55556666666666666542 22478999999999999999999886
No 204
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=35.76 E-value=2.3e+02 Score=38.81 Aligned_cols=107 Identities=14% Similarity=0.122 Sum_probs=71.1
Q ss_pred CCchhhHHHHHHhhhh---hhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHH-------
Q 000487 1069 PTVSAELQSVLKKKGW---VCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAE------- 1138 (1463)
Q Consensus 1069 ~~~~ae~~svlKKiGn---v~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAe------- 1138 (1463)
++.+.-.....++.-+ ||.-.|...-+.++++.|.....+.|-.-+.--|.+-.=.+--|.|+++..+++
T Consensus 950 ~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 950 SSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 3333334444444443 344445555557899999999999998877666555433355666666666655
Q ss_pred ------HHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 000487 1139 ------EMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAK 1179 (1463)
Q Consensus 1139 ------e~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK 1179 (1463)
+..+.+..+..-.||.+.|.+++++ |+|||-|...-+
T Consensus 1030 ~~~~~~evdEdi~gt~l~lFfkndf~~sl~~----fe~aLsis~se~ 1072 (1238)
T KOG1127|consen 1030 SWKEWMEVDEDIRGTDLTLFFKNDFFSSLEF----FEQALSISNSES 1072 (1238)
T ss_pred hcccchhHHHHHhhhhHHHHHHhHHHHHHHH----HHHHhhhccccc
Confidence 3333345666667888999999999 999999987665
No 205
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=35.61 E-value=5.5e+02 Score=31.22 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCc
Q 000487 1097 KEMEKGEHAFANAINAFKEVSDY 1119 (1463)
Q Consensus 1097 ~nlkKAe~afekAI~aF~eV~D~ 1119 (1463)
+.++.|..+|.+|.-+|+-+.++
T Consensus 135 e~~K~A~~~fq~AAG~F~~l~e~ 157 (353)
T cd09243 135 DEAKDVHKSLRTAAGIFQFVKEN 157 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999988875
No 206
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=34.97 E-value=1.2e+02 Score=37.21 Aligned_cols=183 Identities=16% Similarity=0.148 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccchhhhhcccccccC
Q 000487 1154 QNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDI 1233 (1463)
Q Consensus 1154 q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~ 1233 (1463)
|+.|+.|+.| |.+|+..+---- + .++.-|.+||++-.--+.+..-.
T Consensus 110 QgKy~EAIDC----Ys~~ia~~P~Np------------V-------~~~NRA~AYlk~K~FA~AE~DC~----------- 155 (536)
T KOG4648|consen 110 QGKYEEAIDC----YSTAIAVYPHNP------------V-------YHINRALAYLKQKSFAQAEEDCE----------- 155 (536)
T ss_pred ccchhHHHHH----hhhhhccCCCCc------------c-------chhhHHHHHHHHHHHHHHHHhHH-----------
Confidence 5788899999 888876654111 1 35667777777665443333311
Q ss_pred CCCcccchhhhhhhccccHHHHHHHHHHHHhhhchhhhhHHHHHHHHHhhhhhh--HHHHhhhcccccCCCCCCchhHHH
Q 000487 1234 SVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQRD--CFLKFLESDHKKNNLPKGENSFVH 1311 (1463)
Q Consensus 1234 ~~~~t~~~~eeleK~eIsa~Dai~eALkLyEslG~L~kqeAAyah~qLAs~yrd--~cLr~Le~d~k~e~~~K~~~~~iq 1311 (1463)
.+|-.++.|-|| +.|-+.|-+-||..-.. -|-+.|+++.. .+.
T Consensus 156 --------------~AiaLd~~Y~KA-----------YSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~----------~~E 200 (536)
T KOG4648|consen 156 --------------AAIALDKLYVKA-----------YSRRMQARESLGNNMEAKKDCETVLALEPK----------NIE 200 (536)
T ss_pred --------------HHHHhhHHHHHH-----------HHHHHHHHHHHhhHHHHHHhHHHHHhhCcc----------cHH
Confidence 223334444444 22335555666543322 34788888742 234
Q ss_pred HHHHhhhHHHHH----HHHHHhhhCCCCCchhHHHHHhhccchhhhhcccchhH-HHHHHHHHHHHcccccccccccccc
Q 000487 1312 RVRQYASLAERN----WQKAMDFYGPRSHPTMYLTILMERSDLSFRLSCFLHSN-AMLETALSCLLEGRHISESCSESLS 1386 (1463)
Q Consensus 1312 ~ak~y~sLAe~n----yqKAle~Y~p~~hp~~~L~IlmERsAL~~~~st~~~S~-vmLe~aL~~mLe~r~I~E~~ed~~~ 1386 (1463)
+-|+|+.|+..- -.||.+=|.++ |--.+| +|.++-....-|+ .|.+.+..+...||--+.++ ...+
T Consensus 201 LkK~~a~i~Sl~E~~I~~KsT~G~~~A----~Q~~~Q----~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~-~~L~ 271 (536)
T KOG4648|consen 201 LKKSLARINSLRERKIATKSTPGFTPA----RQGMIQ----ILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDS-NQLR 271 (536)
T ss_pred HHHHHHHhcchHhhhHHhhcCCCCCcc----ccchhh----hccccCcchhhhhhhccccceeEeeccccccCcc-ccCc
Confidence 457787776533 22332222222 211111 2333332222233 37777777776665432222 1233
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccCCC
Q 000487 1387 TNGSKVCAKFWNQLQMLLKKMLATTISTST 1416 (1463)
Q Consensus 1387 ~~~~~l~~~F~sqLQ~lLK~ml~l~Ls~s~ 1416 (1463)
....++...|-+- --.+.-++..+++.+
T Consensus 272 ~~~~~~~KI~~~~--~~~~~~~~~~~~~~s 299 (536)
T KOG4648|consen 272 ISDEDIDKIFNSN--CGIIEEVKKTNPKPT 299 (536)
T ss_pred ccHHHHHHHhhcc--hhHHHHHHhcCCCCC
Confidence 3344445554432 233445555554433
No 207
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.95 E-value=4.7e+02 Score=34.19 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHHHHhhh---c----hhhhhHHHH
Q 000487 1204 FAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESM---G----DLRKQEAAY 1276 (1463)
Q Consensus 1204 lA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALkLyEsl---G----~L~kqeAAy 1276 (1463)
-=.-+||.|++|..... |- ++| +.+++|+.+|... | +-.+-+++.
T Consensus 174 syel~yN~Ac~~i~~gk----y~---------------------qA~---elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 174 SYELLYNTACILIENGK----YN---------------------QAI---ELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred hHHHHHHHHHHHHhccc----HH---------------------HHH---HHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 33457899999988888 44 445 7788887777543 1 456777888
Q ss_pred HHHHHhhhh
Q 000487 1277 AYFQLACYQ 1285 (1463)
Q Consensus 1277 ah~qLAs~y 1285 (1463)
|+-|||-.|
T Consensus 226 IrvQlayVl 234 (652)
T KOG2376|consen 226 IRVQLAYVL 234 (652)
T ss_pred HHHHHHHHH
Confidence 888888443
No 208
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=34.83 E-value=2.9e+02 Score=32.14 Aligned_cols=53 Identities=25% Similarity=0.321 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 000487 1051 LSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINA 1112 (1463)
Q Consensus 1051 L~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~a 1112 (1463)
|..|.+-|.+||..- |.-+.+.++++ |.+=|..+|..+-|..|+....+||.+
T Consensus 111 yeeA~skY~~Ale~c---p~~~~e~rsIl------y~Nraaa~iKl~k~e~aI~dcsKaiel 163 (271)
T KOG4234|consen 111 YEEANSKYQEALESC---PSTSTEERSIL------YSNRAAALIKLRKWESAIEDCSKAIEL 163 (271)
T ss_pred HHHHHHHHHHHHHhC---ccccHHHHHHH------HhhhHHHHHHhhhHHHHHHHHHhhHhc
Confidence 567888899999886 55566777665 455677888999999999999999965
No 209
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=34.82 E-value=4.8e+02 Score=34.98 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=25.3
Q ss_pred hhhhhhhhHhhhhhhHHHHHHHHHHHHHhhhcC
Q 000487 746 GESYLALGQAYKEDGQLHQALKTVELACSVYGS 778 (1463)
Q Consensus 746 gesyl~lg~ayked~ql~~~lk~velac~vygs 778 (1463)
-..|-|+|++-|- ..||.+|.....|-.-||-
T Consensus 497 ercfaai~dvak~-r~lhd~~eiadeas~~~gg 528 (1636)
T KOG3616|consen 497 ERCFAAIGDVAKA-RFLHDILEIADEASIEIGG 528 (1636)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhHhhCC
Confidence 3568888988775 5689999998888888875
No 210
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.56 E-value=1.8e+02 Score=35.90 Aligned_cols=78 Identities=13% Similarity=0.152 Sum_probs=41.3
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhH-----HHHHHHH
Q 000487 1087 NEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQ-----NMYKQAL 1161 (1463)
Q Consensus 1087 NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q-----~~YnKAL 1161 (1463)
-.|...++.-|.|.+|....++|- +..-.+ +++..+|+.+..+-....-|..-| .-=--.+
T Consensus 95 vnLAcc~FyLg~Y~eA~~~~~ka~-------k~pL~~-------RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsv 160 (557)
T KOG3785|consen 95 VNLACCKFYLGQYIEAKSIAEKAP-------KTPLCI-------RLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASV 160 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhCC-------CChHHH-------HHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHH
Confidence 345566777889998888877764 333344 333444443322211111111111 1111344
Q ss_pred HHhHHHHHHHHHHHHHH
Q 000487 1162 ETAKLEYCESLRYYRAA 1178 (1463)
Q Consensus 1162 e~ak~eY~kAL~~y~~a 1178 (1463)
-|-+..|++|+++|+.-
T Consensus 161 hYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 161 HYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56677799999998764
No 211
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=34.35 E-value=68 Score=38.07 Aligned_cols=87 Identities=15% Similarity=0.098 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHH--HHHHHHhccCcccchhhhhch
Q 000487 1052 SSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFAN--AINAFKEVSDYTNIILINCNL 1129 (1463)
Q Consensus 1052 ~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afek--AI~aF~eV~D~tNiALiyCNL 1129 (1463)
..+++..+.+++.- |..+ . +....-||.+++.+++|.+|.++|++ ++.. ++.+.+ +.-+
T Consensus 316 ~~~~~~~e~~lk~~---p~~~--------~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-----~p~~~~--~~~L 376 (409)
T TIGR00540 316 EKLEKLIEKQAKNV---DDKP--------K-CCINRALGQLLMKHGEFIEAADAFKNVAACKE-----QLDAND--LAMA 376 (409)
T ss_pred HHHHHHHHHHHHhC---CCCh--------h-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-----CCCHHH--HHHH
Confidence 45677778887653 1111 0 23344677778889999999999995 4433 222222 2245
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 000487 1130 GHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAK 1179 (1463)
Q Consensus 1130 G~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK 1179 (1463)
|.++.. . +...+|.++ |++||.-.....
T Consensus 377 a~ll~~-------~-----------g~~~~A~~~----~~~~l~~~~~~~ 404 (409)
T TIGR00540 377 ADAFDQ-------A-----------GDKAEAAAM----RQDSLGLMLAIQ 404 (409)
T ss_pred HHHHHH-------c-----------CCHHHHHHH----HHHHHHHHhccc
Confidence 555444 2 455677777 888877665443
No 212
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=34.09 E-value=4.7e+02 Score=33.31 Aligned_cols=56 Identities=21% Similarity=0.359 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHH-HHHHHHHHHHHHHHHHHHHHh
Q 000487 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRL-ERKEMEKGEHAFANAINAFKE 1115 (1463)
Q Consensus 1050 NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ym-eq~nlkKAe~afekAI~aF~e 1115 (1463)
=+..||+|.+.+++-. .+ .+ +-.+-++.+||.+++ +-.|++.|+.++++|+...+.
T Consensus 36 LI~~ai~CL~~~~~~~-~l--~p-------~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~ 92 (608)
T PF10345_consen 36 LIATAIKCLEAVLKQF-KL--SP-------RQEARVRLRLASILLEETENLDLAETYLEKAILLCER 92 (608)
T ss_pred HHHHHHHHHHHHhccC-CC--CH-------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4578899999999632 21 11 223446777888888 469999999999999988877
No 213
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.65 E-value=2.8e+02 Score=34.94 Aligned_cols=68 Identities=22% Similarity=0.207 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHH-----HHHHHHHHHHHHHHHHHHHhccCcccchhh
Q 000487 1051 LSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLE-----RKEMEKGEHAFANAINAFKEVSDYTNIILI 1125 (1463)
Q Consensus 1051 L~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~yme-----q~nlkKAe~afekAI~aF~eV~D~tNiALi 1125 (1463)
+..|++.|+.+-+-- ...+...+|.+|+. .+|..+|+.+|+.|...|++.-.+. ....
T Consensus 228 ~~~a~~~~~~~a~~g----------------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~-~~~a 290 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----------------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG-LPPA 290 (552)
T ss_pred hhHHHHHHHHHHhhc----------------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc-CCcc
Confidence 778888888876431 22233344444444 3899999999999999866665555 4456
Q ss_pred hhchhhHHHH
Q 000487 1126 NCNLGHGRRA 1135 (1463)
Q Consensus 1126 yCNLG~~yR~ 1135 (1463)
++.||.+|-.
T Consensus 291 ~~~lg~~Y~~ 300 (552)
T KOG1550|consen 291 QYGLGRLYLQ 300 (552)
T ss_pred ccHHHHHHhc
Confidence 7778877765
No 214
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=32.09 E-value=65 Score=40.65 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=49.5
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHH-HHHhccCc----------cc-chhhhhchhhHHHHHHHHHHhhhhhhhhhh
Q 000487 1084 WVCNEMGRIRLERKEMEKGEHAFANAIN-AFKEVSDY----------TN-IILINCNLGHGRRALAEEMVSKVESLKIHT 1151 (1463)
Q Consensus 1084 nv~NELG~~ymeq~nlkKAe~afekAI~-aF~eV~D~----------tN-iALiyCNLG~~yR~LAee~~sk~~~~k~~~ 1151 (1463)
-.+|+||.|.+..+-|.-+..+|.+|++ .+...... +| --.|..|.|..|-.+
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~--------------- 348 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHS--------------- 348 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhc---------------
Confidence 4569999999999999999999999995 55555442 22 234566777776652
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHH
Q 000487 1152 IFQNMYKQALETAKLEYCESLRYYR 1176 (1463)
Q Consensus 1152 ~~q~~YnKALe~ak~eY~kAL~~y~ 1176 (1463)
+.=..|+|| +++|.++|.
T Consensus 349 ---grPl~AfqC----f~~av~vfh 366 (696)
T KOG2471|consen 349 ---GRPLLAFQC----FQKAVHVFH 366 (696)
T ss_pred ---CCcHHHHHH----HHHHHHHHh
Confidence 233456777 777766664
No 215
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=31.74 E-value=6.4e+02 Score=33.78 Aligned_cols=76 Identities=22% Similarity=0.172 Sum_probs=46.3
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhch--hhHHHHHHHHHHhhhhhhhhhh-h--hHH
Q 000487 1081 KKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNL--GHGRRALAEEMVSKVESLKIHT-I--FQN 1155 (1463)
Q Consensus 1081 KiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNL--G~~yR~LAee~~sk~~~~k~~~-~--~q~ 1155 (1463)
.+--|+++||-...+...|..|-++|+.+ .|..|++-++.-+ =-....||+......+-+++-+ . -.+
T Consensus 794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~-------~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svG 866 (1189)
T KOG2041|consen 794 GKEDAFRNIGETFAEMMEWEEAAKYYSYC-------GDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVG 866 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhc
Confidence 45568999999998889998877777655 5777777665532 2233445553332211111110 0 127
Q ss_pred HHHHHHHH
Q 000487 1156 MYKQALET 1163 (1463)
Q Consensus 1156 ~YnKALe~ 1163 (1463)
++.||+++
T Consensus 867 MC~qAV~a 874 (1189)
T KOG2041|consen 867 MCDQAVEA 874 (1189)
T ss_pred hHHHHHHH
Confidence 89999999
No 216
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=31.38 E-value=1.4e+02 Score=33.27 Aligned_cols=68 Identities=13% Similarity=0.067 Sum_probs=41.6
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHH----HHHHHHHHHHHHHHHHHHHhccCcccc
Q 000487 1047 AENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLE----RKEMEKGEHAFANAINAFKEVSDYTNI 1122 (1463)
Q Consensus 1047 ~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~yme----q~nlkKAe~afekAI~aF~eV~D~tNi 1122 (1463)
++.|...|++.|+.+- .+...-+++.||..|.. ..++.+|...|.+|...--.-.
T Consensus 89 v~~~~~~A~~~~~~~a----------------~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a----- 147 (292)
T COG0790 89 VSRDKTKAADWYRCAA----------------ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA----- 147 (292)
T ss_pred ccccHHHHHHHHHHHh----------------hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-----
Confidence 4455677777777333 23444577788888887 3578888888888775432222
Q ss_pred hhhhhchhhHHHH
Q 000487 1123 ILINCNLGHGRRA 1135 (1463)
Q Consensus 1123 ALiyCNLG~~yR~ 1135 (1463)
++...+||..|..
T Consensus 148 ~~~~~~l~~~~~~ 160 (292)
T COG0790 148 ALAMYRLGLAYLS 160 (292)
T ss_pred HHHHHHHHHHHHc
Confidence 4445555555544
No 217
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.31 E-value=1.4e+02 Score=37.45 Aligned_cols=79 Identities=19% Similarity=0.219 Sum_probs=58.7
Q ss_pred CCChhhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhch----------hhHHHHHHHHHHHHHHHHHHHHHH
Q 000487 1044 VGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEM----------GRIRLERKEMEKGEHAFANAINAF 1113 (1463)
Q Consensus 1044 ~~D~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NEL----------G~~ymeq~nlkKAe~afekAI~aF 1113 (1463)
..|+|..|.-|-+||+.+.+- +.+-+.--+|+-+=|. |++.++|++-.+|+.+|+.|...|
T Consensus 227 L~DAe~RL~ra~kgf~~syGe---------nl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l 297 (568)
T KOG2561|consen 227 LPDAEVRLVRARKGFERSYGE---------NLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKL 297 (568)
T ss_pred CChHHHHHHHHHHhhhhhhhh---------hhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 468999999999999988754 2233333334433332 677888999999999999999999
Q ss_pred HhccCcccchhhhhchhh
Q 000487 1114 KEVSDYTNIILINCNLGH 1131 (1463)
Q Consensus 1114 ~eV~D~tNiALiyCNLG~ 1131 (1463)
.++.-.-----+.|.+|.
T Consensus 298 ~elki~d~~lsllv~mGf 315 (568)
T KOG2561|consen 298 LELKINDETLSLLVGMGF 315 (568)
T ss_pred HHeeccchHHHHHHHcCC
Confidence 998776665556677775
No 218
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=31.28 E-value=3.5e+02 Score=33.51 Aligned_cols=44 Identities=18% Similarity=0.116 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHH
Q 000487 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIR 1093 (1463)
Q Consensus 1050 NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~y 1093 (1463)
...+||+=.+.|-+..+.---.-.+...++-.+|.+-|.|+.+|
T Consensus 204 e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred cHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34566766666665542211111255567778888888888873
No 219
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=30.88 E-value=6.4e+02 Score=30.68 Aligned_cols=68 Identities=26% Similarity=0.195 Sum_probs=43.5
Q ss_pred hHHHHHHhhhhhhhchhhH--HHHHHHHHHHHHHHHHHHHHHHhccCcccc-------hhhhhchhhHHHHHHHHHH
Q 000487 1074 ELQSVLKKKGWVCNEMGRI--RLERKEMEKGEHAFANAINAFKEVSDYTNI-------ILINCNLGHGRRALAEEMV 1141 (1463)
Q Consensus 1074 e~~svlKKiGnv~NELG~~--ymeq~nlkKAe~afekAI~aF~eV~D~tNi-------ALiyCNLG~~yR~LAee~~ 1141 (1463)
|+.+++=.+|=.+..+|.. +...+.++.|..+|..|.-+|+-+.|...- .-+..=|..+|-+-|+|..
T Consensus 104 EkasVLFNigAl~Sq~aa~~~r~~~eglK~A~~~Fq~AAG~F~~l~e~~~~~ps~Dls~~~L~~L~~LmLAQAQEc~ 180 (350)
T cd09244 104 EKASVLFNIGALYTQIGAKQDRTTEEGIEAAVDAFQRAAGAFNYLRENFSNAPSMDLSPEMLEALIKLMLAQAQECV 180 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666655 222477999999999999999999884210 1112224556666666443
No 220
>PLN03218 maturation of RBCL 1; Provisional
Probab=30.73 E-value=7.3e+02 Score=34.32 Aligned_cols=111 Identities=16% Similarity=0.180 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhc-cC---cccchhhh
Q 000487 1051 LSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEV-SD---YTNIILIN 1126 (1463)
Q Consensus 1051 L~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV-~D---~tNiALiy 1126 (1463)
+..|+++|++.++. .+... .-+||-|-..+...+++++|+..|++-...-..+ .| +.-++-.|
T Consensus 523 ~eeAl~lf~~M~~~--Gv~PD-----------~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 523 VAKAFGAYGIMRSK--NVKPD-----------RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHHHHHHc--CCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 45677888877643 11111 2356777777777788888888887765421111 12 12256667
Q ss_pred hchhhHHHHHHHHHHhhhhhhhhhhh--hHHHHHHHHHH--hHHHHHHHHHHHHHHh
Q 000487 1127 CNLGHGRRALAEEMVSKVESLKIHTI--FQNMYKQALET--AKLEYCESLRYYRAAK 1179 (1463)
Q Consensus 1127 CNLG~~yR~LAee~~sk~~~~k~~~~--~q~~YnKALe~--ak~eY~kAL~~y~~aK 1179 (1463)
|..|.+-++ .+.-.+|. +.++ ....|+..+.. ..-.+.+|+++|...+
T Consensus 590 ~k~G~ldeA--~elf~~M~---e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 590 ANAGQVDRA--KEVYQMIH---EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHCCCHHHH--HHHHHHHH---HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 777776554 22222221 1111 11456655554 0012345677776665
No 221
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=30.08 E-value=89 Score=26.72 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=17.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 000487 1155 NMYKQALETAKLEYCESLRYYRAA 1178 (1463)
Q Consensus 1155 ~~YnKALe~ak~eY~kAL~~y~~a 1178 (1463)
++|.+|++- |.+||.+....
T Consensus 15 e~f~qA~~D----~~~aL~i~~~l 34 (38)
T PF10516_consen 15 ENFEQAIED----YEKALEIQEEL 34 (38)
T ss_pred ccHHHHHHH----HHHHHHHHHHh
Confidence 699999999 99999998764
No 222
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=29.61 E-value=56 Score=24.52 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=21.8
Q ss_pred hhhhhhhHhhhhhhHHHHHHHHHHHH
Q 000487 747 ESYLALGQAYKEDGQLHQALKTVELA 772 (1463)
Q Consensus 747 esyl~lg~ayked~ql~~~lk~vela 772 (1463)
|+++.+|.+|.+-|+..+|+++.+-.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 56888999999999999999887643
No 223
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=29.57 E-value=7.6e+02 Score=29.56 Aligned_cols=125 Identities=17% Similarity=0.120 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHHHHhhhc----h-hh--
Q 000487 1198 MEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMG----D-LR-- 1270 (1463)
Q Consensus 1198 deV~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALkLyEslG----~-L~-- 1270 (1463)
+.+..+++.++||+|.+|..... . ... .+--|.++ .++++|--+++-.. + +.
T Consensus 106 ~sl~fE~~~vLfn~aa~~s~~A~-~-~~~----------------~e~~K~A~---~~l~~AAG~f~~l~~~~l~~~~~~ 164 (346)
T cd09247 106 DSLRFELGMVLFLYGAALRERAS-E-VLP----------------TEDFKEAA---THLRRAAGVFEFLAHDELPRLRGA 164 (346)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH-H-hcc----------------HHHHHHHH---HHHHHHHHHHHHHHhccccccccC
Confidence 46788999999999999965544 1 011 12344555 77777776665542 0 00
Q ss_pred ----------hhHH--HHHHHHHhhhhhhHHHHhhhcccccCCCCCCchhHHHHHHHhhhHHHHHHHHHHhhhCCCC---
Q 000487 1271 ----------KQEA--AYAYFQLACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGPRS--- 1335 (1463)
Q Consensus 1271 ----------kqeA--Ayah~qLAs~yrd~cLr~Le~d~k~e~~~K~~~~~iq~ak~y~sLAe~nyqKAle~Y~p~~--- 1335 (1463)
..+. |.....||-.|--.+.|+.+-. .+ ...+ -..+.-+-.+|++|.+..+...
T Consensus 165 ~s~~~~~~Dl~~~~~~aL~~l~LAqAQe~~~~KAi~~~-------~~-~sli---AKLa~~~~~~y~~A~~~l~~~~~~~ 233 (346)
T cd09247 165 LSADERPPECTPSLALAMSLLCLAEAQAVTARKAEEKG-------TS-PSLL---AKLHYGATQFLEEAKNVLRSLATDL 233 (346)
T ss_pred cccCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CC-hHHH---HHHHHHHHHHHHHHHHHHHccCcch
Confidence 1122 5566666666655656654322 12 3344 2334556677999999987532
Q ss_pred --CchhHHHHHhhccchhhhh
Q 000487 1336 --HPTMYLTILMERSDLSFRL 1354 (1463)
Q Consensus 1336 --hp~~~L~IlmERsAL~~~~ 1354 (1463)
-+..++..+.-..+++...
T Consensus 234 ~~i~~~~~~~l~~k~~~~~A~ 254 (346)
T cd09247 234 KDLDPRFLRFISSCIALHEAR 254 (346)
T ss_pred hhcCHHHHHHHHHHHHHHHHH
Confidence 2334554444444444333
No 224
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=29.28 E-value=9.8e+02 Score=28.00 Aligned_cols=117 Identities=18% Similarity=0.137 Sum_probs=69.7
Q ss_pred chhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHH
Q 000487 1122 IILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVH 1201 (1463)
Q Consensus 1122 iALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~ 1201 (1463)
.+-+..|+|-++..+|...... . -....++|..+ +++|--++.-.+.......... .=.+..
T Consensus 110 ~~~vLfn~aa~~s~~a~~~~~~---~-----~~~~~k~A~~~----fq~AAG~F~~l~~~~~~~~~~~------~~~Dl~ 171 (345)
T cd09034 110 LLSILFNLAALASQLANEKLIT---G-----SEEDLKQAIKS----LQKAAGYFEYLKEHVLPLPPDE------LPVDLT 171 (345)
T ss_pred HHHHHHHHHHHHHHHHHhccCC---C-----chHHHHHHHHH----HHHHHHHHHHHHHhccccCCCC------CCccCC
Confidence 3556667777776666532221 0 01467788888 8888888888773322211110 113455
Q ss_pred HHHHHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHHHHhhh
Q 000487 1202 TQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESM 1266 (1463)
Q Consensus 1202 ~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALkLyEsl 1266 (1463)
-....++..|....+-+=.+.++..+|. .+..=+.|....+.+.|.+|++.+...
T Consensus 172 ~~~l~~l~~l~LAqAQe~~~~ka~~~~~----------~~~~liakLa~~~~~~y~~A~~~l~~~ 226 (345)
T cd09034 172 EAVLSALSLIMLAQAQECFLLKAEEDKK----------AKLSLLARLACEAAKYYEEALKCLSGV 226 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc----------CcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6667777777777777666444443210 233445666677889999999998854
No 225
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=29.26 E-value=2.5e+02 Score=38.34 Aligned_cols=143 Identities=23% Similarity=0.285 Sum_probs=87.0
Q ss_pred eeccCCCCCChhhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000487 1037 KYLEDPVVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEV 1116 (1463)
Q Consensus 1037 kyL~~~~~~D~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV 1116 (1463)
.||.-|..+- .+|+--..|+..+...|.-..+....++|+...=.-|.+++--...-+|=+..|.++|..|+++
T Consensus 581 ~Wl~~Pl~~~------~~I~~R~dav~~l~~~~~~~~~~~e~l~klPDlERlL~Rih~~~~~~~k~i~~f~rvLegfk~~ 654 (1125)
T KOG0217|consen 581 TWLMAPLCDK------EDIKQRQDAVDSLGKAPMDRTKVGETLKKLPDLERLLVRIHNGGEKNKKKIADFIRVLEGFKEI 654 (1125)
T ss_pred HHhhCcCCCH------HHHHHHHHHHHHHhcCchhHHHHHHHHhhCCcHHHHHHHHHhcCccchhHHHHHHHHHHHHHHH
Confidence 5776564432 3455556666666554555556666777777776666666544444567788999999999998
Q ss_pred cCcccchhhhhch-hhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH--------------hHHHHHHHHHHHHHHhhh
Q 000487 1117 SDYTNIILINCNL-GHGRRALAEEMVSKVESLKIHTIFQNMYKQALET--------------AKLEYCESLRYYRAAKLQ 1181 (1463)
Q Consensus 1117 ~D~tNiALiyCNL-G~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~--------------ak~eY~kAL~~y~~aK~~ 1181 (1463)
.+.-.. +++.-. |.+.+.+.+...+ ++.+.--.++|..|+.- .-.||.+|++..+++..+
T Consensus 655 ~~~~~~-~~~v~~~~~~~~~is~~~~~----~p~~~~~i~~~~~af~r~~a~~eg~i~P~~Gfd~eyD~a~k~~~e~e~~ 729 (1125)
T KOG0217|consen 655 NKLLGS-LINVLKEGEGLRLISELLES----MPNLSEEIENWTEAFDRVKAVKEGVIVPLEGFDEEYDEAMKRVDEAENE 729 (1125)
T ss_pred HHHHHH-HHHHHHhhHHHHHHHHHhcC----cchhhHHHHHHHHHHHHHHHhhcCccCCCccccHHHHHHhhHHHHHHHH
Confidence 775442 122222 5566665553333 11111112444444433 235799999999999988
Q ss_pred hhhhhhhhc
Q 000487 1182 LNSLVEEAG 1190 (1463)
Q Consensus 1182 l~~~~~~~~ 1190 (1463)
|.+..++..
T Consensus 730 L~~~L~~~r 738 (1125)
T KOG0217|consen 730 LLAYLEEYR 738 (1125)
T ss_pred HHHHHHHHH
Confidence 887766543
No 226
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=29.21 E-value=7.5e+02 Score=31.47 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 000487 1048 ENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINA 1112 (1463)
Q Consensus 1048 E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~a 1112 (1463)
++.+..|+..-++|++.= +.... -+--+|+.. ++.+.-..|..+|..|+..
T Consensus 313 ~K~~~rAL~~~eK~I~~~------~r~~~-alilKG~lL-------~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 313 EKKFERALNFVEKCIDSE------PRNHE-ALILKGRLL-------IALERHTQAVIAFRTAQML 363 (564)
T ss_pred hhhHHHHHHHHHHHhccC------cccch-HHHhccHHH-------HhccchHHHHHHHHHHHhc
Confidence 566777887777777552 11111 222334444 4445567888999999843
No 227
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=29.06 E-value=1.1e+03 Score=30.99 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000487 1051 LSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEV 1116 (1463)
Q Consensus 1051 L~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV 1116 (1463)
+-.-++|||.+|+-- +..+|-+-+-+++|=.. .++|..|...|++.+.-|+..
T Consensus 18 fre~l~~he~el~~t----------nkfik~~ikdg~~li~a---~knls~a~~kfa~tl~~f~f~ 70 (812)
T KOG1451|consen 18 FRERLKCHEVELDRT----------NKFIKELIKDGKELISA---LKNLSSAVRKFAQTLQEFKFE 70 (812)
T ss_pred HHHHhhHHHHHHHHH----------HHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHhheee
Confidence 445689999999654 23455555556665443 378999999999999998754
No 228
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=28.77 E-value=1e+03 Score=28.72 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=79.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhhhhhhccccHHHHHHHHHHHHhhhc---------
Q 000487 1197 RMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMG--------- 1267 (1463)
Q Consensus 1197 wdeV~~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~eeleK~eIsa~Dai~eALkLyEslG--------- 1267 (1463)
-.++..+.|.++||+|.+|....... .. .-.+--|++. .+++.|--.++-..
T Consensus 103 ~~sl~fEka~vlfNiaal~s~~a~~~--~~--------------~~~~glK~A~---~~fq~AAG~F~~l~e~~~~~~~~ 163 (353)
T cd09246 103 QANVHFEKAAVLFNLGALSSQLGLQQ--DR--------------TTAEGIKQAC---HAFQAAAGAFAHLRDKVSGKTGG 163 (353)
T ss_pred ecchHHHHHHHHHHHHHHHHHHHHhc--CC--------------CChHHHHHHH---HHHHHHHHHHHHHHHhccccccC
Confidence 34589999999999999996555410 00 1122233444 66666655554432
Q ss_pred ----hh-hhhHHHHHHHHHhhhhhhHHHHhhhcccccCCCCCCchhHHHHHHHhhhHHHHHHHHHHhhhCCCC----Cch
Q 000487 1268 ----DL-RKQEAAYAYFQLACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGPRS----HPT 1338 (1463)
Q Consensus 1268 ----~L-~kqeAAyah~qLAs~yrd~cLr~Le~d~k~e~~~K~~~~~iq~ak~y~sLAe~nyqKAle~Y~p~~----hp~ 1338 (1463)
++ ..--.++...+||..|--.+.|+.+-. .| .+.+ | ..+.-+-.+|++|.+..+... -+.
T Consensus 164 ~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Ka~~~~------~k--~sli--A-KLa~qv~~~Y~~a~~~l~~~~~~~~~~~ 232 (353)
T cd09246 164 FRTPDLTAECLGMLESLMLAQAQECFYEKAVADG------KS--PAVC--S-KLAKQARSYYEEALEALDSPPLKGHFDK 232 (353)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC------CC--ccHH--H-HHHHHHHHHHHHHHHHHhcccccccccH
Confidence 00 122346777888887777777776522 12 3344 2 223344567999999887421 244
Q ss_pred hHHHHHhhccchhhhhcccchhHH
Q 000487 1339 MYLTILMERSDLSFRLSCFLHSNA 1362 (1463)
Q Consensus 1339 ~~L~IlmERsAL~~~~st~~~S~v 1362 (1463)
.|.+.+.-.+++|..++...++..
T Consensus 233 ~W~~~~~~K~~~f~A~A~~~~a~~ 256 (353)
T cd09246 233 SWVAHVQLKAAYFRAEALYRAAKD 256 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766555554
No 229
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.59 E-value=1.8e+02 Score=35.31 Aligned_cols=142 Identities=18% Similarity=0.157 Sum_probs=75.8
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCccc-chhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHh
Q 000487 1086 CNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTN-IILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETA 1164 (1463)
Q Consensus 1086 ~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tN-iALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~a 1164 (1463)
..-||-.|++-..|..|-.||+.=-..|-+...+-- .|....|-|+--.+|+- ++.|.-. .+--++.++.
T Consensus 47 LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV--~~~~~D~------~~L~~~~lqL- 117 (459)
T KOG4340|consen 47 LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV--AFLLLDN------PALHSRVLQL- 117 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH--HHHhcCC------HHHHHHHHHH-
Confidence 345788888888888888888876666655554433 44444444443333322 1111000 0122233332
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHH-HHHHHHHHHHHHhhhhccchhhhhcccccccCCCCcccchhh
Q 000487 1165 KLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVH-TQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRK 1243 (1463)
Q Consensus 1165 k~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~-~qlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~t~~~~e 1243 (1463)
+-|+.|-...= -++..|-+-.. ..-|.+.++.|+++-.++. |+
T Consensus 118 ----qaAIkYse~Dl-----------~g~rsLveQlp~en~Ad~~in~gCllykegq----yE----------------- 161 (459)
T KOG4340|consen 118 ----QAAIKYSEGDL-----------PGSRSLVEQLPSENEADGQINLGCLLYKEGQ----YE----------------- 161 (459)
T ss_pred ----HHHHhcccccC-----------cchHHHHHhccCCCccchhccchheeecccc----HH-----------------
Confidence 23333332221 11112222222 2456778888888877777 66
Q ss_pred hhhhccccHHHHHHHHHHHHhhhc--hhhhhHHHHHHHHHh
Q 000487 1244 ELRKHEVSANDAIREALSLYESMG--DLRKQEAAYAYFQLA 1282 (1463)
Q Consensus 1244 eleK~eIsa~Dai~eALkLyEslG--~L~kqeAAyah~qLA 1282 (1463)
.++ .-+++|+ +..| |+-.|.+|-+||+=+
T Consensus 162 ----aAv---qkFqaAl---qvsGyqpllAYniALaHy~~~ 192 (459)
T KOG4340|consen 162 ----AAV---QKFQAAL---QVSGYQPLLAYNLALAHYSSR 192 (459)
T ss_pred ----HHH---HHHHHHH---hhcCCCchhHHHHHHHHHhhh
Confidence 222 4444444 4566 888999999999876
No 230
>PLN02789 farnesyltranstransferase
Probab=28.26 E-value=2.4e+02 Score=33.39 Aligned_cols=85 Identities=14% Similarity=0.171 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhch
Q 000487 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNL 1129 (1463)
Q Consensus 1050 NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNL 1129 (1463)
.+..++++++++++.- +..+ .+-..+||+...||.. .+++++.++.++|.. |.-| ..+.++.
T Consensus 87 ~l~eeL~~~~~~i~~n------pkny-qaW~~R~~~l~~l~~~-----~~~~el~~~~kal~~-----dpkN-y~AW~~R 148 (320)
T PLN02789 87 DLEEELDFAEDVAEDN------PKNY-QIWHHRRWLAEKLGPD-----AANKELEFTRKILSL-----DAKN-YHAWSHR 148 (320)
T ss_pred hHHHHHHHHHHHHHHC------Ccch-HHhHHHHHHHHHcCch-----hhHHHHHHHHHHHHh-----Cccc-HHHHHHH
Confidence 4666777777777553 1122 2344445555555531 234456666666632 2223 3345555
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 000487 1130 GHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRY 1174 (1463)
Q Consensus 1130 G~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~ 1174 (1463)
|.+.+. .+.|.+|+++ |.++|+.
T Consensus 149 ~w~l~~------------------l~~~~eeL~~----~~~~I~~ 171 (320)
T PLN02789 149 QWVLRT------------------LGGWEDELEY----CHQLLEE 171 (320)
T ss_pred HHHHHH------------------hhhHHHHHHH----HHHHHHH
Confidence 555444 1346677777 6666654
No 231
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=28.26 E-value=7.7e+02 Score=29.53 Aligned_cols=19 Identities=11% Similarity=0.232 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000487 1093 RLERKEMEKGEHAFANAIN 1111 (1463)
Q Consensus 1093 ymeq~nlkKAe~afekAI~ 1111 (1463)
...++++..|..+|.++.+
T Consensus 128 A~~~g~~~~A~~~l~~A~~ 146 (398)
T PRK10747 128 AQQRGDEARANQHLERAAE 146 (398)
T ss_pred HHHCCCHHHHHHHHHHHHh
Confidence 3667888888888888863
No 232
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=27.99 E-value=8.5e+02 Score=30.16 Aligned_cols=86 Identities=27% Similarity=0.238 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhhchhhhhHHHHHHHHHhhhhhh---------HHHHhhhcccccCCCCCCchhHHHHHHHhhhHHHHHH
Q 000487 1254 DAIREALSLYESMGDLRKQEAAYAYFQLACYQRD---------CFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNW 1324 (1463)
Q Consensus 1254 Dai~eALkLyEslG~L~kqeAAyah~qLAs~yrd---------~cLr~Le~d~k~e~~~K~~~~~iq~ak~y~sLAe~ny 1324 (1463)
.|+.-|-+|..-.|.-+..++|-.|--||--+.- .--|++..+. |.-...|...+- -+++-+|
T Consensus 159 KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~------~cvRAsi~lG~v--~~~~g~y 230 (389)
T COG2956 159 KAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADK------KCVRASIILGRV--ELAKGDY 230 (389)
T ss_pred HHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc------cceehhhhhhHH--HHhccch
Confidence 4555555555555656677777777667643332 1224444441 111222222211 1234448
Q ss_pred HHHHhhhCCC-CCchhHHHHHhhc
Q 000487 1325 QKAMDFYGPR-SHPTMYLTILMER 1347 (1463)
Q Consensus 1325 qKAle~Y~p~-~hp~~~L~IlmER 1347 (1463)
++|++-+..- .+--+|+.-.+++
T Consensus 231 ~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 231 QKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHH
Confidence 8888888766 4444666655554
No 233
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.97 E-value=3.8e+02 Score=32.27 Aligned_cols=90 Identities=10% Similarity=0.130 Sum_probs=62.7
Q ss_pred cCCCCCChhhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhh--------hchhhHHHHHHHHHHHHHHHHHHHH
Q 000487 1040 EDPVVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVC--------NEMGRIRLERKEMEKGEHAFANAIN 1111 (1463)
Q Consensus 1040 ~~~~~~D~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~--------NELG~~ymeq~nlkKAe~afekAI~ 1111 (1463)
.++.+++|++.+..--.||-.++-=+.++..- -+..+++-+-+ ..||++.|+-|+.+.|..+|++--+
T Consensus 165 ~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS----~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 165 EESSIRLWRKRLGRVMYSMANCLLGMKEYVLS----VDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchhhhhh----HHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34667888888888888887766333211111 12333333322 3589999999999999999999888
Q ss_pred HHHhccCcccchhhhhchhhHH
Q 000487 1112 AFKEVSDYTNIILINCNLGHGR 1133 (1463)
Q Consensus 1112 aF~eV~D~tNiALiyCNLG~~y 1133 (1463)
...+.+.-+|-+++.-|...+|
T Consensus 241 ~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 241 VTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHhhhhccchhHHHHhhhhhhe
Confidence 8888888888777766665554
No 234
>KOG2479 consensus Translation initiation factor 3, subunit d (eIF-3d) [Translation, ribosomal structure and biogenesis]
Probab=27.63 E-value=1.5e+02 Score=37.11 Aligned_cols=41 Identities=24% Similarity=0.525 Sum_probs=36.1
Q ss_pred HHhHHHHHHHHhhhccCC-CceEEEEeeCCCCeEEeecccCC
Q 000487 410 QQSGLSVLRFLQENCKQD-PGAYWLYKSAGEDVIRLFDLSVI 450 (1463)
Q Consensus 410 ~~~A~nvL~FLksnCtkd-G~TYwL~k~~~ed~vkLYDLTtL 450 (1463)
++||=-||+=+-+-|-|. .|.|.|.|+.+..+|+||++..=
T Consensus 485 mdN~WGIlRciiDlcMK~~dGKYll~KDPnkpiiRlYsvP~~ 526 (549)
T KOG2479|consen 485 MDNAWGILRCIIDLCMKQPDGKYLLVKDPNKPIIRLYSVPPN 526 (549)
T ss_pred ccchhhhHHHHHHHHhcCCCCcEEEEeCCCCceEEEeeCCCC
Confidence 567778999999999765 89999999999999999998763
No 235
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=27.16 E-value=76 Score=27.11 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=30.3
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000487 1084 WVCNEMGRIRLERKEMEKGEHAFANAINAFKEVS 1117 (1463)
Q Consensus 1084 nv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~ 1117 (1463)
.++-.||-+-++.++|..|..=|.+|+.+-+++-
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~ 35 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELL 35 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 4677899999999999999999999999988764
No 236
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=26.89 E-value=1.3e+03 Score=28.71 Aligned_cols=68 Identities=19% Similarity=0.178 Sum_probs=44.2
Q ss_pred hHHHHHHhhhhhhhchhhHHHH---------HHHHHHHHHHHHHHHHHHHhccCcccc-------hhhhhchhhHHHHHH
Q 000487 1074 ELQSVLKKKGWVCNEMGRIRLE---------RKEMEKGEHAFANAINAFKEVSDYTNI-------ILINCNLGHGRRALA 1137 (1463)
Q Consensus 1074 e~~svlKKiGnv~NELG~~yme---------q~nlkKAe~afekAI~aF~eV~D~tNi-------ALiyCNLG~~yR~LA 1137 (1463)
...++.--+++|.++||.+|=. .+-++.|..+|..|.-+|.-+.++..- .-...=|..+|-+-|
T Consensus 97 ~q~sl~FEKasVLFNigAL~Sqlaa~~~r~t~eGlK~A~~~FQ~AAG~F~~L~e~~~~~Ps~Dms~~~L~~L~~LMLAQA 176 (384)
T cd09248 97 QQRALAFEKGSVLFNIGALHTQIGARQDRSCTEGTRRAIDAFQRAAGAFSLLRENFSNAPSPDMSTASLSMLEQLMVAQA 176 (384)
T ss_pred ccccHHHHHHHHHHhHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCHHHHHHHHHHHHHHH
Confidence 3345666667777777776543 367999999999999999999885210 011222455666666
Q ss_pred HHHH
Q 000487 1138 EEMV 1141 (1463)
Q Consensus 1138 ee~~ 1141 (1463)
+|+.
T Consensus 177 QEC~ 180 (384)
T cd09248 177 QECI 180 (384)
T ss_pred HHHH
Confidence 6543
No 237
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=26.49 E-value=8e+02 Score=28.09 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHH-HHHHHHHHHHHHHHHHHHHhcc--Cc----c-cchhhh
Q 000487 1055 LSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLE-RKEMEKGEHAFANAINAFKEVS--DY----T-NIILIN 1126 (1463)
Q Consensus 1055 leCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~yme-q~nlkKAe~afekAI~aF~eV~--D~----t-NiALiy 1126 (1463)
|+|+|..|+-. ...++++-.-|+.| +. -+.|-.|..+|..+|.-|...+ |. . +|+-+.
T Consensus 4 ~~~~e~~le~~----------~k~i~kLiK~c~~~----i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~i~~sl 69 (207)
T cd07635 4 IRAHEAELERT----------NRFIKELLKDGKNL----IAATKSLSAAQRKFAHSLRDFKFEFIGDAETDDERCIDASL 69 (207)
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHH
Confidence 57777776432 33444444444332 22 2688899999999999998332 22 2 233444
Q ss_pred hchhhHHHHHHH
Q 000487 1127 CNLGHGRRALAE 1138 (1463)
Q Consensus 1127 CNLG~~yR~LAe 1138 (1463)
--++...+.+.+
T Consensus 70 ~ef~~~~~el~d 81 (207)
T cd07635 70 QEFSNFLKNLEE 81 (207)
T ss_pred HHHHHHHHHHHH
Confidence 445555554444
No 238
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=25.98 E-value=2.1e+02 Score=33.55 Aligned_cols=86 Identities=15% Similarity=0.128 Sum_probs=56.5
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHH
Q 000487 1083 GWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALE 1162 (1463)
Q Consensus 1083 Gnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe 1162 (1463)
+-+.+.+|...+..++|..|+..|.++... +++| .-.++-+|-.|-.+++ +.
T Consensus 100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-----~p~d-~~~~~~lgaaldq~Gr------------------~~---- 151 (257)
T COG5010 100 RELLAAQGKNQIRNGNFGEAVSVLRKAARL-----APTD-WEAWNLLGAALDQLGR------------------FD---- 151 (257)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----CCCC-hhhhhHHHHHHHHccC------------------hh----
Confidence 345566899999999999999999998853 2322 4445555555544222 22
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhhccchh
Q 000487 1163 TAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTA 1222 (1463)
Q Consensus 1163 ~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA~TYlnLG~LLqde~~ls 1222 (1463)
.|+..|.|||+...... ..+.||||.|--++.+.
T Consensus 152 ~Ar~ay~qAl~L~~~~p--------------------------~~~nNlgms~~L~gd~~ 185 (257)
T COG5010 152 EARRAYRQALELAPNEP--------------------------SIANNLGMSLLLRGDLE 185 (257)
T ss_pred HHHHHHHHHHHhccCCc--------------------------hhhhhHHHHHHHcCCHH
Confidence 23444666666665554 46789999998888743
No 239
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=25.94 E-value=1e+03 Score=27.14 Aligned_cols=53 Identities=17% Similarity=0.118 Sum_probs=35.9
Q ss_pred HhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhcc---CcccchhhhhchhhHHHHHHH
Q 000487 1080 KKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVS---DYTNIILINCNLGHGRRALAE 1138 (1463)
Q Consensus 1080 KKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~---D~tNiALiyCNLG~~yR~LAe 1138 (1463)
+|...+....|. .+-.+...|..|+.-|-.-. |...|+-+..++|.+.+-++.
T Consensus 22 ~K~~k~~~~~g~------~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l~El~~ 77 (215)
T cd07604 22 KKAVKAIHNSGL------AHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSVFTKELAA 77 (215)
T ss_pred HHHHHHHHHhHH------HHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 45567788888888887655 333488888888888887776
No 240
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.92 E-value=9.8e+02 Score=26.90 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcc-CcccchhhhhchhhHHHHHHH
Q 000487 1097 KEMEKGEHAFANAINAFKEVS-DYTNIILINCNLGHGRRALAE 1138 (1463)
Q Consensus 1097 ~nlkKAe~afekAI~aF~eV~-D~tNiALiyCNLG~~yR~LAe 1138 (1463)
+.|..|...|..||.-|.... |...|+......|.+.+-+..
T Consensus 33 ~~~~~a~~~F~~~L~~~~~~~~~d~~i~~~l~kF~~~l~el~~ 75 (200)
T cd07603 33 KTYVNANSLFVNSLNDLSDYFRDDSLVQNCLNKFIQALQEMNN 75 (200)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHH
Confidence 456778888999998888766 556788888778888777666
No 241
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=25.59 E-value=66 Score=39.40 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=33.5
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccch
Q 000487 1084 WVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNII 1123 (1463)
Q Consensus 1084 nv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiA 1123 (1463)
..+.-||+.++..++|.||..+|+.||+.-.+..|..=.|
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la 368 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELA 368 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHH
Confidence 5677899999999999999999999998877777654443
No 242
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=25.30 E-value=35 Score=27.60 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=18.9
Q ss_pred hhhhhhhhHhhhhhhHHHHHHH
Q 000487 746 GESYLALGQAYKEDGQLHQALK 767 (1463)
Q Consensus 746 gesyl~lg~ayked~ql~~~lk 767 (1463)
.++|..||.+|.+-|++.+|.+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhcC
Confidence 3688999999999999998863
No 243
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.18 E-value=1.1e+03 Score=26.83 Aligned_cols=57 Identities=23% Similarity=0.413 Sum_probs=45.7
Q ss_pred hHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHH
Q 000487 1074 ELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAE 1138 (1463)
Q Consensus 1074 e~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAe 1138 (1463)
....+-+.+|..|+.++.+--+...+..+..-|.+++..+-... +-.|..+...+|+
T Consensus 12 ~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E--------~~~L~~~L~~lae 68 (211)
T cd07598 12 RITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTE--------NPSLKQGLKNFAE 68 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc--------CHHHHHHHHHHHH
Confidence 45567888999999999998888999999999999999888777 3445566666664
No 244
>PRK14574 hmsH outer membrane protein; Provisional
Probab=23.20 E-value=2.2e+02 Score=38.04 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKE 1115 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~e 1115 (1463)
.++..|++.|+++++.- |..+ .++ ..|+..|...+...+|+..+++++..+-.
T Consensus 116 gdyd~Aiely~kaL~~d---P~n~----~~l-------~gLa~~y~~~~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 116 KRWDQALALWQSSLKKD---PTNP----DLI-------SGMIMTQADAGRGGVVLKQATELAERDPT 168 (822)
T ss_pred CCHHHHHHHHHHHHhhC---CCCH----HHH-------HHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence 45668899999998764 3222 222 25566677777777888887777766544
No 245
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=23.12 E-value=8.7e+02 Score=31.01 Aligned_cols=79 Identities=13% Similarity=0.087 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchh
Q 000487 1051 LSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLG 1130 (1463)
Q Consensus 1051 L~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG 1130 (1463)
+..-++-|...++.-+.++.+.......---+-|+++-|+.+|...|.+++|+.+.++||.. ++| ++-+|.--|
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h-----tPt-~~ely~~Ka 235 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH-----TPT-LVELYMTKA 235 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCC-cHHHHHHHH
Confidence 33444445555544434444442222233346799999999999999999999999999953 333 466677777
Q ss_pred hHHHH
Q 000487 1131 HGRRA 1135 (1463)
Q Consensus 1131 ~~yR~ 1135 (1463)
+++..
T Consensus 236 rilKh 240 (517)
T PF12569_consen 236 RILKH 240 (517)
T ss_pred HHHHH
Confidence 77665
No 246
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=22.54 E-value=99 Score=30.01 Aligned_cols=38 Identities=24% Similarity=0.151 Sum_probs=28.6
Q ss_pred CCChhhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhh
Q 000487 1044 VGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKK 1082 (1463)
Q Consensus 1044 ~~D~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKi 1082 (1463)
-.|-..|+..|+++|..|++.+- .++.+.-...+..|+
T Consensus 15 ~eD~~gny~eA~~lY~~ale~~~-~ekn~~~k~~i~~K~ 52 (75)
T cd02680 15 DEDEKGNAEEAIELYTEAVELCI-NTSNETMDQALQTKL 52 (75)
T ss_pred HhhHhhhHHHHHHHHHHHHHHHH-HhcChhhHHHHHHHH
Confidence 46888999999999999999983 355555555555554
No 247
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=22.54 E-value=5e+02 Score=26.41 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccc---hhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHH
Q 000487 1092 IRLERKEMEKGEHAFANAINAFKEVSDYTNI---ILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEY 1168 (1463)
Q Consensus 1092 ~ymeq~nlkKAe~afekAI~aF~eV~D~tNi---ALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY 1168 (1463)
..++++++.++-.+..+|+.++.+...--|. .-+--||-.+|.++-+....- ..++-.+. .
T Consensus 38 ~a~~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~g~eia~~L~~lY~y~~~~L~~A------------~~~~d~~~----l 101 (122)
T PF02561_consen 38 EAIEQGDIEEKNEALQKAQDIITELQSSLDFEKGGEIADNLFRLYDYMIRQLVQA------------NLKKDPER----L 101 (122)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHH------------HHTT-HHH----H
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHH------------HHhCCHHH----H
Confidence 3667788999999999999999988766664 346678888998866644332 22233344 6
Q ss_pred HHHHHHHHHHh
Q 000487 1169 CESLRYYRAAK 1179 (1463)
Q Consensus 1169 ~kAL~~y~~aK 1179 (1463)
.+.+++++..+
T Consensus 102 ~~v~~~l~~l~ 112 (122)
T PF02561_consen 102 DEVIRILEELR 112 (122)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66777777776
No 248
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=22.33 E-value=3.5e+02 Score=26.43 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=26.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHH
Q 000487 1155 NMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFA 1205 (1463)
Q Consensus 1155 ~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~qlA 1205 (1463)
+.|.+|++. |.+||+++...+ ++...+.+..++.
T Consensus 20 gny~eA~~l----Y~~ale~~~~ek-------------n~~~k~~i~~K~~ 53 (75)
T cd02680 20 GNAEEAIEL----YTEAVELCINTS-------------NETMDQALQTKLK 53 (75)
T ss_pred hhHHHHHHH----HHHHHHHHHHhc-------------ChhhHHHHHHHHH
Confidence 899999999 999999998843 4555666655553
No 249
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.04 E-value=8.4e+02 Score=27.52 Aligned_cols=39 Identities=10% Similarity=0.127 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCcc-cchhhhhchhhHHHHH
Q 000487 1098 EMEKGEHAFANAINAFKEVSDYT-NIILINCNLGHGRRAL 1136 (1463)
Q Consensus 1098 nlkKAe~afekAI~aF~eV~D~t-NiALiyCNLG~~yR~L 1136 (1463)
.|..|...|..||.-|....-.. .|+-.....|.+.+-+
T Consensus 34 ~~~~a~~~F~~~l~d~~~~~~gd~~i~~~L~kF~~~l~ei 73 (200)
T cd07637 34 AYATTNKLFVSGIRDLSQQCKKDEMISECLDKFGDSLQEM 73 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 44445666666666554432221 2333334444444433
No 250
>PLN03218 maturation of RBCL 1; Provisional
Probab=21.98 E-value=8.1e+02 Score=33.93 Aligned_cols=27 Identities=4% Similarity=-0.097 Sum_probs=19.1
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHH
Q 000487 1084 WVCNEMGRIRLERKEMEKGEHAFANAI 1110 (1463)
Q Consensus 1084 nv~NELG~~ymeq~nlkKAe~afekAI 1110 (1463)
-+||-|...|...+++.+|+..|.+-.
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 367777777777777777777776654
No 251
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=21.74 E-value=3.9e+02 Score=28.00 Aligned_cols=71 Identities=13% Similarity=0.075 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHH
Q 000487 1089 MGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEY 1168 (1463)
Q Consensus 1089 LG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY 1168 (1463)
+..-++.+||.-||+.-.++.|-.-.+- .+..+++.-=|.+...+|.....- ++-.-+..-|+++ |
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~---~~~~~lh~~QG~if~~lA~~ten~-------d~k~~yLl~sve~----~ 67 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGED---ESSWLLHRLQGTIFYKLAKKTENP-------DVKFRYLLGSVEC----F 67 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCC---CchHHHHHHHhHHHHHHHHhccCc-------hHHHHHHHHhHHH----H
Confidence 4556788999999999999998554432 233477777788887777744332 1112355567888 6
Q ss_pred HHHHH
Q 000487 1169 CESLR 1173 (1463)
Q Consensus 1169 ~kAL~ 1173 (1463)
.++..
T Consensus 68 s~a~~ 72 (111)
T PF04781_consen 68 SRAVE 72 (111)
T ss_pred HHHhc
Confidence 66644
No 252
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=21.66 E-value=59 Score=40.01 Aligned_cols=68 Identities=18% Similarity=0.298 Sum_probs=0.0
Q ss_pred ccceeeeccCCCCCChhhhHHHHHHHHHHHHHHhcCCCCchhh-HHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHH
Q 000487 1032 NGGIFKYLEDPVVGDAENNLSSALSCYEEAVKALGGLPTVSAE-LQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAI 1110 (1463)
Q Consensus 1032 ~GgiFkyL~~~~~~D~E~NL~~AleCYeeALkal~~l~~~~ae-~~svlKKiGnv~NELG~~ymeq~nlkKAe~afekAI 1110 (1463)
+|.+|.|.. .++.-.+.|+..|+++|+.|+ + ......=..-.+.|||-.++-+.+|.+|..+|..-+
T Consensus 265 ~s~lfl~~~-gR~~~~~g~~~~Ai~~~~~a~-----------~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 265 NSALFLFFE-GRLERLKGNLEEAIESFERAI-----------ESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred CcHHHHHHH-HHHHHHhcCHHHHHHHHHHhc-----------cchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Q ss_pred H
Q 000487 1111 N 1111 (1463)
Q Consensus 1111 ~ 1111 (1463)
+
T Consensus 333 ~ 333 (468)
T PF10300_consen 333 K 333 (468)
T ss_pred h
No 253
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=21.60 E-value=81 Score=24.04 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=19.9
Q ss_pred hhhhhhHhhhhhhHHHHHHHHHH
Q 000487 748 SYLALGQAYKEDGQLHQALKTVE 770 (1463)
Q Consensus 748 syl~lg~ayked~ql~~~lk~ve 770 (1463)
.++.||++|-.-|++.+|+.+.+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 46789999999999999998875
No 254
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=20.97 E-value=1.1e+03 Score=25.66 Aligned_cols=135 Identities=18% Similarity=0.204 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhhhhhhchhhH----HHHHHHHHHHHHHHHHHHHHHHhccCcccchh
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRI----RLERKEMEKGEHAFANAINAFKEVSDYTNIIL 1124 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiGnv~NELG~~----ymeq~nlkKAe~afekAI~aF~eV~D~tNiAL 1124 (1463)
.++..|+..|++-++.. |.++ ....+.=.+|.++.++..- ...++...+|+..|.+=|+-|=. ..=...
T Consensus 56 ~~y~~A~~~~~~fi~~y---P~~~-~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~---S~y~~~ 128 (203)
T PF13525_consen 56 GDYEEAIAAYERFIKLY---PNSP-KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN---SEYAEE 128 (203)
T ss_dssp T-HHHHHHHHHHHHHH----TT-T-THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT---STTHHH
T ss_pred CCHHHHHHHHHHHHHHC---CCCc-chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC---chHHHH
Confidence 57888999999988775 5544 3334455555555544332 23345566777777766654432 222455
Q ss_pred hhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHH
Q 000487 1125 INCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQF 1204 (1463)
Q Consensus 1125 iyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~~~~~~~~~LwdeV~~ql 1204 (1463)
+.-.|..++..||+..-.-+..+-.. +.|.-|+.. |...++-|-.-+ ..++....+
T Consensus 129 A~~~l~~l~~~la~~e~~ia~~Y~~~----~~y~aA~~r----~~~v~~~yp~t~----------------~~~~al~~l 184 (203)
T PF13525_consen 129 AKKRLAELRNRLAEHELYIARFYYKR----GKYKAAIIR----FQYVIENYPDTP----------------AAEEALARL 184 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCT----T-HHHHHHH----HHHHHHHSTTSH----------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc----ccHHHHHHH----HHHHHHHCCCCc----------------hHHHHHHHH
Confidence 55667777777777333222222222 567777777 666666554443 223345556
Q ss_pred HHHHHHHHHh
Q 000487 1205 AHTYLRLGML 1214 (1463)
Q Consensus 1205 A~TYlnLG~L 1214 (1463)
+.+|..||.-
T Consensus 185 ~~~y~~l~~~ 194 (203)
T PF13525_consen 185 AEAYYKLGLK 194 (203)
T ss_dssp HHHHHHTT-H
T ss_pred HHHHHHhCCh
Confidence 6666666654
No 255
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=20.94 E-value=90 Score=27.06 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=20.7
Q ss_pred hhhhhhhHhhhhhhHHHHHHHHHHHH
Q 000487 747 ESYLALGQAYKEDGQLHQALKTVELA 772 (1463)
Q Consensus 747 esyl~lg~ayked~ql~~~lk~vela 772 (1463)
+.++.||++|.+.||+.+|.++++-.
T Consensus 26 ~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 26 EARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55677999999999999999987743
No 256
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=20.69 E-value=3.1e+02 Score=37.25 Aligned_cols=106 Identities=18% Similarity=0.229 Sum_probs=73.5
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhh-hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhh
Q 000487 1047 AENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKG-WVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILI 1125 (1463)
Q Consensus 1047 ~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKiG-nv~NELG~~ymeq~nlkKAe~afekAI~aF~eV~D~tNiALi 1125 (1463)
+|..|..|+.-|+.-...+ |.- +.| .|...+|.-.+++..=..-..-|..|+.-|++..+-+.--|=
T Consensus 487 ~~~~~~~~~~~~~~~~~~~---~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (932)
T PRK13184 487 AEKLYDQALIFYRRIRESF---PGR---------KEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLE 554 (932)
T ss_pred hhHHHHHHHHHHHHHhhcC---CCc---------ccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchH
Confidence 5788888888887766444 321 122 245667777888755555557899999999999999887776
Q ss_pred hhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhh
Q 000487 1126 NCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVE 1187 (1463)
Q Consensus 1126 yCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~y~~aK~~l~~~~~ 1187 (1463)
|-.=+.+|.. .+.|++-+++ |.-||+=|...- ++..+.+
T Consensus 555 ~~~~~~~~~~------------------~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~ 593 (932)
T PRK13184 555 YLGKALVYQR------------------LGEYNEEIKS----LLLALKRYSQHP-EISRLRD 593 (932)
T ss_pred HHhHHHHHHH------------------hhhHHHHHHH----HHHHHHhcCCCC-ccHHHHH
Confidence 6555555555 3678888899 888988887665 4444443
No 257
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=20.10 E-value=2.2e+03 Score=28.84 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcccchhhhhchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 000487 1097 KEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRY 1174 (1463)
Q Consensus 1097 ~nlkKAe~afekAI~aF~eV~D~tNiALiyCNLG~~yR~LAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kAL~~ 1174 (1463)
|+-+.|+++-.-|++ +|.... .|.-=+|-+||. ...|++|++| |..||++
T Consensus 55 g~~~ea~~~vr~glr-----~d~~S~-vCwHv~gl~~R~------------------dK~Y~eaiKc----y~nAl~~ 104 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLR-----NDLKSH-VCWHVLGLLQRS------------------DKKYDEAIKC----YRNALKI 104 (700)
T ss_pred cchHHHHHHHHHHhc-----cCcccc-hhHHHHHHHHhh------------------hhhHHHHHHH----HHHHHhc
Confidence 344566777777775 444432 244447777777 2589999999 9999876
Done!