Query 000487
Match_columns 1463
No_of_seqs 105 out of 107
Neff 3.3
Searched_HMMs 29240
Date Tue Mar 26 17:56:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000487.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_262-266//hhsearch_pdb/000487hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulq_A Response regulator aspa 1.0 1 1 111.0 17.6 160 1048-1287 116-276 (383)
2 3q15_A PSP28, response regulat 1.0 1 1 106.7 18.8 185 1047-1338 113-298 (378)
3 3ulq_A Response regulator aspa 1.0 1 1 104.4 16.0 141 1050-1267 158-298 (383)
4 1qqe_A Vesicular transport pro 1.0 1 1 101.7 16.8 98 1081-1220 75-173 (292)
5 3u3w_A Transcriptional activat 1.0 1 1 100.1 11.0 195 1048-1347 88-282 (293)
6 4a1s_A PINS, partner of inscut 1.0 1 1 99.9 21.0 175 1049-1287 100-275 (411)
7 3q15_A PSP28, response regulat 1.0 1 1 99.7 15.1 129 1085-1284 103-231 (378)
8 3sf4_A G-protein-signaling mod 1.0 1 1 96.8 21.5 173 1050-1286 62-238 (406)
9 2ifu_A Gamma-SNAP; membrane fu 1.0 1 1 95.8 13.5 152 1050-1282 51-202 (307)
10 2ifu_A Gamma-SNAP; membrane fu 1.0 1 1 94.9 15.3 173 1049-1297 5-186 (307)
No 1
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=111.00 Aligned_cols=160 Identities=14% Similarity=0.165 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHH
Q ss_conf 56699999999999997349998325688899754335220125887799899999999999999886068-33504532
Q 000487 1048 ENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSD-YTNIILIN 1126 (1463)
Q Consensus 1048 E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKlGnv~NELG~~rleq~nlkKAe~aFekAI~aFkeV~D-~tNiALin 1126 (1463)
..++..|+++|++|++.+ .........+.+++.||..++.++++.+|+.+|.+|+..|++..+ ..+++.++
T Consensus 116 ~g~~~~A~~~~~~al~~~--------~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKL--------IFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp TTCHHHHHHHHHHHHTTG--------GGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHH--------HHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 669999999999999998--------609989999999999999999808879999999999999986766437799899
Q ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 11246899989999866655544434489999999996999999999999986533123341035552110237787889
Q 000487 1127 CNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAH 1206 (1463)
Q Consensus 1127 CNLG~lyR~lAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kALriyg~aK~~l~~~~~~~~~~~~~Lwd~V~tqlA~ 1206 (1463)
.|||..+.. .+.|.+|+++ |.+||++..... . ....+.
T Consensus 188 ~~lg~~~~~------------------~g~~~~A~~~----~~~al~~~~~~~------------~--------~~~~~~ 225 (383)
T 3ulq_A 188 SLFATNFLD------------------LKQYEDAISH----FQKAYSMAEAEK------------Q--------PQLMGR 225 (383)
T ss_dssp HHHHHHHHH------------------TTCHHHHHHH----HHHHHHHHHHTT------------C--------HHHHHH
T ss_pred HHHHHHHHH------------------HCCHHHHHHH----HHHHHHHHHHCC------------C--------HHHHHH
T ss_conf 999999998------------------5489999999----999999998749------------8--------278999
Q ss_pred HHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999986630362123311565445777766410110100003478999999998865060246689999999764346
Q 000487 1207 TYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQR 1286 (1463)
Q Consensus 1207 TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~~~~~~eeleK~eIsa~Dai~eALkLyEslG~L~kqeAAyah~qLAs~yr 1286 (1463)
+|++||.++..... ++ +++ +++++|+.+++..+. ....+.++++||..|.
T Consensus 226 ~~~~lg~~y~~~g~----~~---------------------~A~---~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~ 275 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQ----YE---------------------DAI---PYFKRAIAVFEESNI--LPSLPQAYFLITQIHY 275 (383)
T ss_dssp HHHHHHHHHHHTTC----HH---------------------HHH---HHHHHHHHHHHHTTC--GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC----HH---------------------HHH---HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHH
T ss_conf 99999999987799----99---------------------999---999999998986165--5139999999999998
Q ss_pred H
Q ss_conf 6
Q 000487 1287 D 1287 (1463)
Q Consensus 1287 d 1287 (1463)
.
T Consensus 276 ~ 276 (383)
T 3ulq_A 276 K 276 (383)
T ss_dssp H
T ss_pred H
T ss_conf 8
No 2
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=106.71 Aligned_cols=185 Identities=14% Similarity=0.081 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHH
Q ss_conf 456699999999999997349998325688899754335220125887799899999999999999886068-3350453
Q 000487 1047 AENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSD-YTNIILI 1125 (1463)
Q Consensus 1047 ~E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKlGnv~NELG~~rleq~nlkKAe~aFekAI~aFkeV~D-~tNiALi 1125 (1463)
...++..|+++|++|++.+. ........+++++.||.+++..+++.+|+.+|.+|+..|++..+ ..+++.+
T Consensus 113 ~~g~~~~A~~~~~~al~~~~--------~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELP--------FVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGG--------GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 97789999999999999986--------5889189999999999999981990999999999999998678830669999
Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 21124689998999986665554443448999999999699999999999998653312334103555211023778788
Q 000487 1126 NCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFA 1205 (1463)
Q Consensus 1126 nCNLG~lyR~lAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kALriyg~aK~~l~~~~~~~~~~~~~Lwd~V~tqlA 1205 (1463)
+.|||..+.. .+.|.+|+++ |.+||++..... . ....+
T Consensus 185 ~~~lg~~y~~------------------~~~~~~A~~~----~~~al~~~~~~~------------~--------~~~~~ 222 (378)
T 3q15_A 185 LFVIAGNYDD------------------FKHYDKALPH----LEAALELAMDIQ------------N--------DRFIA 222 (378)
T ss_dssp HHHHHHHHHH------------------TTCHHHHHHH----HHHHHHHHHHTT------------C--------HHHHH
T ss_pred HHHHHHHHHH------------------HCCHHHHHHH----HHHHHHHHHHCC------------C--------HHHHH
T ss_conf 9999999998------------------5789999999----999999999869------------8--------77899
Q ss_pred HHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998663036212331156544577776641011010000347899999999886506024668999999976434
Q 000487 1206 HTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQ 1285 (1463)
Q Consensus 1206 ~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~~~~~~eeleK~eIsa~Dai~eALkLyEslG~L~kqeAAyah~qLAs~y 1285 (1463)
.+|++||.++..... ++ +++ +++.+|+.+++..+. ... +.++++||..|
T Consensus 223 ~~~~~lg~~y~~~~~----~~---------------------~A~---~~~~~al~~~~~~~~--~~~-~~~~~~la~~~ 271 (378)
T 3q15_A 223 ISLLNIANSYDRSGD----DQ---------------------MAV---EHFQKAAKVSREKVP--DLL-PKVLFGLSWTL 271 (378)
T ss_dssp HHHHHHHHHHHHHTC----HH---------------------HHH---HHHHHHHHHHHHHCG--GGH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC----HH---------------------HHH---HHHHHHHHHHHHHCC--HHH-HHHHHHHHHHH
T ss_conf 999989999987899----99---------------------999---999999998876088--569-99999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 66777864101124889999614899898765699999999985618999932
Q 000487 1286 RDCFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGPRSHPT 1338 (1463)
Q Consensus 1286 rd~cLr~Le~d~k~e~~~K~~~~~lq~akqy~sLAe~nyqKAle~Y~p~~hp~ 1338 (1463)
... - -...| ..++++|++.......+.
T Consensus 272 ~~~----g---------------~~~~A-------~~~~~~al~~~~~~~~~~ 298 (378)
T 3q15_A 272 CKA----G---------------QTQKA-------FQFIEEGLDHITARSHKF 298 (378)
T ss_dssp HHT----T---------------CHHHH-------HHHHHHHHHHCCTTCCSC
T ss_pred HHC----C---------------CHHHH-------HHHHHHHHHHHHHCCCHH
T ss_conf 988----9---------------98999-------999999999998838988
No 3
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=104.44 Aligned_cols=141 Identities=9% Similarity=0.106 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCH
Q ss_conf 69999999999999734999832568889975433522012588779989999999999999988606833504532112
Q 000487 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNL 1129 (1463)
Q Consensus 1050 NL~~AleCYeeALkal~~l~~~~ae~~svlKKlGnv~NELG~~rleq~nlkKAe~aFekAI~aFkeV~D~tNiALinCNL 1129 (1463)
++..|+++|++|+.++...+ ....+.+.+++.||.++...+++.+|+.+|.+++..+++.+|...++.++.||
T Consensus 158 ~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 230 (383)
T 3ulq_A 158 QTYFSMDYARQAYEIYKEHE-------AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNI 230 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTCS-------TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 87999999999999998676-------64377998999999999985489999999999999998749827899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 46899989999866655544434489999999996999999999999986533123341035552110237787889999
Q 000487 1130 GHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYL 1209 (1463)
Q Consensus 1130 G~lyR~lAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kALriyg~aK~~l~~~~~~~~~~~~~Lwd~V~tqlA~TYl 1209 (1463)
|.+|.. ++.|.+|+++ |.+||++..... . ....+.+++
T Consensus 231 g~~y~~------------------~g~~~~A~~~----~~~al~~~~~~~------------~--------~~~~~~~~~ 268 (383)
T 3ulq_A 231 GLCKNS------------------QSQYEDAIPY----FKRAIAVFEESN------------I--------LPSLPQAYF 268 (383)
T ss_dssp HHHHHH------------------TTCHHHHHHH----HHHHHHHHHHTT------------C--------GGGHHHHHH
T ss_pred HHHHHH------------------CCCHHHHHHH----HHHHHHHHHHHC------------C--------CHHHHHHHH
T ss_conf 999987------------------7999999999----999999898616------------5--------513999999
Q ss_pred HHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHC
Q ss_conf 9998663036212331156544577776641011010000347899999999886506
Q 000487 1210 RLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMG 1267 (1463)
Q Consensus 1210 nLG~LLqde~~ls~~ye~~~~~~~~~~~~~~~~eeleK~eIsa~Dai~eALkLyEslG 1267 (1463)
+||.++..... ++ +++ +++.+|+.+++..+
T Consensus 269 ~l~~~~~~~g~----~~---------------------~A~---~~~~~al~~~~~~~ 298 (383)
T 3ulq_A 269 LITQIHYKLGK----ID---------------------KAH---EYHSKGMAYSQKAG 298 (383)
T ss_dssp HHHHHHHHTTC----HH---------------------HHH---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCC----HH---------------------HHH---HHHHHHHHHHHHCC
T ss_conf 99999988799----79---------------------999---99999999998859
No 4
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=101.75 Aligned_cols=98 Identities=14% Similarity=0.160 Sum_probs=56.7
Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q ss_conf 54335220125887799899999999999999886068335045321124689998999986665554443448-99999
Q 000487 1081 KKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQ-NMYKQ 1159 (1463)
Q Consensus 1081 KlGnv~NELG~~rleq~nlkKAe~aFekAI~aFkeV~D~tNiALinCNLG~lyR~lAee~~sk~~~~k~~~~~q-~~YnK 1159 (1463)
..+++++++|..|..++++.+|+.+|.++|.++.+.+|....+..+.|||.+|.. + +.|.+
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~------------------~lg~~~~ 136 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN------------------DLHDYAK 136 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------TTCCHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HHCCHHH
T ss_conf 9999999999999877999999999999999999869889999999999999998------------------6247999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999699999999999998653312334103555211023778788999999986630362
Q 000487 1160 ALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDT 1220 (1463)
Q Consensus 1160 ALe~ak~eY~kALriyg~aK~~l~~~~~~~~~~~~~Lwd~V~tqlA~TYlnLG~LLqde~~ 1220 (1463)
|+++ |.+||+++.... . ....+.+|.++|.++.....
T Consensus 137 A~~~----~~~Al~~~~~~~------------~--------~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 137 AIDC----YELAGEWYAQDQ------------S--------VALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp HHHH----HHHHHHHHHHTT------------C--------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHH----HHHHHHHHHHCC------------C--------HHHHHHHHHHHHHHHHHHCC
T ss_conf 9999----999999988489------------8--------67899999999999998088
No 5
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=1.00 E-value=1 Score=100.05 Aligned_cols=195 Identities=11% Similarity=0.069 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 56699999999999997349998325688899754335220125887799899999999999999886068335045321
Q 000487 1048 ENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINC 1127 (1463)
Q Consensus 1048 E~NL~~AleCYeeALkal~~l~~~~ae~~svlKKlGnv~NELG~~rleq~nlkKAe~aFekAI~aFkeV~D~tNiALinC 1127 (1463)
..++..|+++|+++++.. + .....+...+.++.+|.+++.++++.+|+.+|.+++..+.+..|....+.++.
T Consensus 88 ~~~y~~a~~~~~~~l~~~---~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELKKE---E-----YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp TTCHHHHHHHHHHHHTTC---C-----CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC---C-----CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 702999999999975223---4-----77278999999999999997146899999999999997605643888999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 12468999899998666555444344899999999969999999999999865331233410355521102377878899
Q 000487 1128 NLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHT 1207 (1463)
Q Consensus 1128 NLG~lyR~lAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kALriyg~aK~~l~~~~~~~~~~~~~Lwd~V~tqlA~T 1207 (1463)
|||..|.. ++.|.+|+++ |.+||+++.... . .....+.+
T Consensus 160 ~lg~~y~~------------------~g~~~~A~~~----~~~al~~~~~~~------------~-------~~~~~~~~ 198 (293)
T 3u3w_A 160 AIANIYAE------------------NGYLKKGIDL----FEQILKQLEALH------------D-------NEEFDVKV 198 (293)
T ss_dssp HHHHHHHH------------------TTCHHHHHHH----HHHHHHHHHHSS------------C-------CHHHHHHH
T ss_pred HHHHHHHH------------------CCCHHHHHHH----HHHHHHHHHHCC------------C-------CHHHHHHH
T ss_conf 99999998------------------6989999999----999999998544------------0-------05578999
Q ss_pred HHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999866303621233115654457777664101101000034789999999988650602466899999997643466
Q 000487 1208 YLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQRD 1287 (1463)
Q Consensus 1208 YlnLG~LLqde~~ls~~ye~~~~~~~~~~~~~~~~eeleK~eIsa~Dai~eALkLyEslG~L~kqeAAyah~qLAs~yrd 1287 (1463)
|+++|.+|..... |+ +++ +++.+||.++...+ ..+..|.+|+++|..|..
T Consensus 199 ~~nlg~~y~~~~~----y~---------------------~A~---~~~~~al~~~~~~~--~~~~~~~~~~~lg~~~~~ 248 (293)
T 3u3w_A 199 RYNHAKALYLDSR----YE---------------------ESL---YQVNKAIEISCRIN--SMALIGQLYYQRGECLRK 248 (293)
T ss_dssp HHHHHHHHHHTTC----HH---------------------HHH---HHHHHHHHHHHHTT--BCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HH---------------------HHH---HHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHH
T ss_conf 9979999999757----99---------------------999---99999999999708--498899999999999998
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 777864101124889999614899898765699999999985618999932478987510
Q 000487 1288 CFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGPRSHPTMYLTILMER 1347 (1463)
Q Consensus 1288 ~cLr~Le~d~k~e~~~K~~~~~lq~akqy~sLAe~nyqKAle~Y~p~~hp~~~L~IlmER 1347 (1463)
. +. ....| ..+|++|++++....... ++..+.+.
T Consensus 249 ~---------------g~---~~~~A-------~~~~~~Al~i~~~~~~~~-~~~~l~~~ 282 (293)
T 3u3w_A 249 L---------------EY---EEAEI-------EDAYKKASFFFDILEMHA-YKEALVNK 282 (293)
T ss_dssp T---------------TC---CHHHH-------HHHHHHHHHHHHHTTCTG-GGGGGTTC
T ss_pred H---------------CC---CHHHH-------HHHHHHHHHHHHHHCCHH-HHHHHHHH
T ss_conf 3---------------88---58999-------999999999998849798-99999988
No 6
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=99.88 Aligned_cols=175 Identities=11% Similarity=0.087 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHC
Q ss_conf 66999999999999973499983256888997543352201258877998999999999999998860683350453211
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKlGnv~NELG~~rleq~nlkKAe~aFekAI~aFkeV~D~tNiALinCN 1128 (1463)
.++..|+++|++|+... +........+.+++.+|.+++..+++.+|+.+|.+++..++..+|....+.++.+
T Consensus 100 g~~~~A~~~~~~al~~~--------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 171 (411)
T 4a1s_A 100 GDYNKAMQYHKHDLTLA--------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYN 171 (411)
T ss_dssp TCHHHHHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH--------HHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 89999999999999999--------8715736799999999999998789999999999999999871044889999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 246899989999866-6555444344899999999969999999999999865331233410355521102377878899
Q 000487 1129 LGHGRRALAEEMVSK-VESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHT 1207 (1463)
Q Consensus 1129 LG~lyR~lAee~~sk-~~~~k~~~~~q~~YnKALe~ak~eY~kALriyg~aK~~l~~~~~~~~~~~~~Lwd~V~tqlA~T 1207 (1463)
+|.++...++..... ...+... -...|.+|+++ |.+++++..... . ....+.+
T Consensus 172 l~~~~~~~g~~~~~~~~~~~~~~--a~~~~~~A~~~----~~~al~~~~~~~------------~--------~~~~~~~ 225 (411)
T 4a1s_A 172 LGNVYHAKGKHLGQRNPGKFGDD--VKEALTRAVEF----YQENLKLMRDLG------------D--------RGAQGRA 225 (411)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHH--HHHHHHHHHHH----HHHHHHHHHHHT------------C--------HHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCHHHHHH--HHHHHHHHHHH----HHHHHHHHHHCC------------C--------HHHHHHH
T ss_conf 99999983761113331001121--06999999999----999999999738------------8--------7999999
Q ss_pred HHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999866303621233115654457777664101101000034789999999988650602466899999997643466
Q 000487 1208 YLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQRD 1287 (1463)
Q Consensus 1208 YlnLG~LLqde~~ls~~ye~~~~~~~~~~~~~~~~eeleK~eIsa~Dai~eALkLyEslG~L~kqeAAyah~qLAs~yrd 1287 (1463)
++++|.++..... ++ +++ +++.+|+.++...+ .....+.++++||..|..
T Consensus 226 ~~~la~~~~~~g~----~~---------------------~A~---~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~ 275 (411)
T 4a1s_A 226 CGNLGNTYYLLGD----FQ---------------------AAI---EHHQERLRIAREFG--DRAAERRANSNLGNSHIF 275 (411)
T ss_dssp HHHHHHHHHHTTC----HH---------------------HHH---HHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCC----HH---------------------HHH---HHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHH
T ss_conf 9999999998588----29---------------------999---99999999998519--967899999999999998
No 7
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=99.68 Aligned_cols=129 Identities=12% Similarity=0.094 Sum_probs=65.6
Q ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 52201258877998999999999999998860683350453211246899989999866655544434489999999996
Q 000487 1085 VCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETA 1164 (1463)
Q Consensus 1085 v~NELG~~rleq~nlkKAe~aFekAI~aFkeV~D~tNiALinCNLG~lyR~lAee~~sk~~~~k~~~~~q~~YnKALe~a 1164 (1463)
.+.-+|..++.++++.+|+.+|.+|+..++.+.|....+.++.+||..|.. .+.|.+|+++
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~------------------~~~~~~A~~~- 163 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYH------------------MKQTHVSMYH- 163 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH------------------TTCHHHHHHH-
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------CCCCHHHHHH-
T ss_conf 999999999997789999999999999986588918999999999999998------------------1990999999-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 99999999999998653312334103555211023778788999999986630362123311565445777766410110
Q 000487 1165 KLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKE 1244 (1463)
Q Consensus 1165 k~eY~kALriyg~aK~~l~~~~~~~~~~~~~Lwd~V~tqlA~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~~~~~~ee 1244 (1463)
|.+||+++.... . .....+.++++||.++..... ++
T Consensus 164 ---~~~al~~~~~~~------------~-------~~~~~~~~~~~lg~~y~~~~~----~~------------------ 199 (378)
T 3q15_A 164 ---ILQALDIYQNHP------------L-------YSIRTIQSLFVIAGNYDDFKH----YD------------------ 199 (378)
T ss_dssp ---HHHHHHHHHTST------------T-------CHHHHHHHHHHHHHHHHHTTC----HH------------------
T ss_pred ---HHHHHHHHHHCC------------C-------CHHHHHHHHHHHHHHHHHHCC----HH------------------
T ss_conf ---999999998678------------8-------306699999999999998578----99------------------
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 1000034789999999988650602466899999997643
Q 000487 1245 LRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACY 1284 (1463)
Q Consensus 1245 leK~eIsa~Dai~eALkLyEslG~L~kqeAAyah~qLAs~ 1284 (1463)
+++ +++.+|+.+++..+ .....+.++++||..
T Consensus 200 ---~A~---~~~~~al~~~~~~~--~~~~~~~~~~~lg~~ 231 (378)
T 3q15_A 200 ---KAL---PHLEAALELAMDIQ--NDRFIAISLLNIANS 231 (378)
T ss_dssp ---HHH---HHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred ---HHH---HHHHHHHHHHHHCC--CHHHHHHHHHHHHHH
T ss_conf ---999---99999999999869--877899999989999
No 8
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=1.00 E-value=1 Score=96.83 Aligned_cols=173 Identities=14% Similarity=0.104 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCH
Q ss_conf 69999999999999734999832568889975433522012588779989999999999999988606833504532112
Q 000487 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNL 1129 (1463)
Q Consensus 1050 NL~~AleCYeeALkal~~l~~~~ae~~svlKKlGnv~NELG~~rleq~nlkKAe~aFekAI~aFkeV~D~tNiALinCNL 1129 (1463)
++..|+++|++|+... .........+.+++.+|..++..+++.+|+.+|.+++..+....|....+.++.++
T Consensus 62 ~~~~A~~~~~~al~~~--------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 133 (406)
T 3sf4_A 62 DYAKALEYHHHDLTLA--------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 133 (406)
T ss_dssp CHHHHHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH--------HHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 8999999999999999--------86266678999999999999884799999999999999998653210068999999
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 468999899----9986665554443448999999999699999999999998653312334103555211023778788
Q 000487 1130 GHGRRALAE----EMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFA 1205 (1463)
Q Consensus 1130 G~lyR~lAe----e~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kALriyg~aK~~l~~~~~~~~~~~~~Lwd~V~tqlA 1205 (1463)
|.++...++ .....+..+.... ...|.+|+++ |.+++++..... . ....+
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~~~a--~~~~~~A~~~----~~~al~~~~~~~------------~--------~~~~~ 187 (406)
T 3sf4_A 134 GNVYHAKGKSFGCPGPQDVGEFPEEV--RDALQAAVDF----YEENLSLVTALG------------D--------RAAQG 187 (406)
T ss_dssp HHHHHHHHHTCC-------CCCCHHH--HHHHHHHHHH----HHHHHHHHHHTT------------C--------HHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHH--HHHHHHHHHH----HHHHHHHHHHCC------------C--------CHHHH
T ss_conf 99999739744444310000104667--8999999999----999999998556------------7--------47789
Q ss_pred HHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998663036212331156544577776641011010000347899999999886506024668999999976434
Q 000487 1206 HTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQ 1285 (1463)
Q Consensus 1206 ~TYlnLG~LLqde~~ls~~ye~~~~~~~~~~~~~~~~eeleK~eIsa~Dai~eALkLyEslG~L~kqeAAyah~qLAs~y 1285 (1463)
.+|.++|.++..... ++ +++ +++.+|+.++...+ .....+.+++++|..|
T Consensus 188 ~~~~~la~~~~~~g~----~~---------------------~A~---~~~~~al~~~~~~~--~~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGN----FR---------------------DAV---IAHEQRLLIAKEFG--DKAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHTB----HH---------------------HHH---HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC----HH---------------------HHH---HHHHHHHHHHHHCC--CCHHHHHHHHHHHHHH
T ss_conf 999999999998368----99---------------------999---99999999998627--8589999999999999
Q ss_pred H
Q ss_conf 6
Q 000487 1286 R 1286 (1463)
Q Consensus 1286 r 1286 (1463)
.
T Consensus 238 ~ 238 (406)
T 3sf4_A 238 I 238 (406)
T ss_dssp H
T ss_pred H
T ss_conf 8
No 9
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=1.00 E-value=1 Score=95.76 Aligned_cols=152 Identities=13% Similarity=0.128 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCH
Q ss_conf 69999999999999734999832568889975433522012588779989999999999999988606833504532112
Q 000487 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNL 1129 (1463)
Q Consensus 1050 NL~~AleCYeeALkal~~l~~~~ae~~svlKKlGnv~NELG~~rleq~nlkKAe~aFekAI~aFkeV~D~tNiALinCNL 1129 (1463)
++..|+++|++|+.+. .........+.+++.+|.+|..++++.+|+.+|.+++.++++.+|....+..+.||
T Consensus 51 ~~~~A~~~~~~al~~~--------~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 51 QLEQAKDAYLQEAEAH--------ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp CHHHHHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH--------HHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 8899999999999999--------98699799999999999999867999999999999999999859989999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 46899989999866655544434489999999996999999999999986533123341035552110237787889999
Q 000487 1130 GHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYL 1209 (1463)
Q Consensus 1130 G~lyR~lAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kALriyg~aK~~l~~~~~~~~~~~~~Lwd~V~tqlA~TYl 1209 (1463)
|.+|.. +.|.+|+++ |.+||.++.... . ....+.+|+
T Consensus 123 g~~~~~-------------------g~~~~A~~~----~~~Al~~~~~~~------------~--------~~~~~~~~~ 159 (307)
T 2ifu_A 123 GKLMEP-------------------LDLSKAVHL----YQQAAAVFENEE------------R--------LRQAAELIG 159 (307)
T ss_dssp HHHHTT-------------------TCHHHHHHH----HHHHHHHHHHTT------------C--------HHHHHHHHH
T ss_pred HHHHHC-------------------CCHHHHHHH----HHHHHHHHHHCC------------C--------HHHHHHHHH
T ss_conf 999873-------------------899999999----999999998479------------8--------547999999
Q ss_pred HHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 9998663036212331156544577776641011010000347899999999886506024668999999976
Q 000487 1210 RLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLA 1282 (1463)
Q Consensus 1210 nLG~LLqde~~ls~~ye~~~~~~~~~~~~~~~~eeleK~eIsa~Dai~eALkLyEslG~L~kqeAAyah~qLA 1282 (1463)
++|.++..... |. ++| +++++|+.++...+ .....+.+++++|
T Consensus 160 ~lg~~~~~~g~----~~---------------------~A~---~~~~~al~~~~~~~--~~~~~~~~~~~~g 202 (307)
T 2ifu_A 160 KASRLLVRQQK----FD---------------------EAA---ASLQKEKSMYKEME--NYPTCYKKCIAQV 202 (307)
T ss_dssp HHHHHHHHTTC----HH---------------------HHH---HHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC----HH---------------------HHH---HHHHHHHHHHHHCC--CHHHHHHHHHHHH
T ss_conf 99999998188----99---------------------999---99999999999867--8547999999999
No 10
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=1.00 E-value=1 Score=94.94 Aligned_cols=173 Identities=13% Similarity=0.038 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHC
Q ss_conf 66999999999999973499983256888997543352201258877998999999999999998860683350453211
Q 000487 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1463)
Q Consensus 1049 ~NL~~AleCYeeALkal~~l~~~~ae~~svlKKlGnv~NELG~~rleq~nlkKAe~aFekAI~aFkeV~D~tNiALinCN 1128 (1463)
.++..|.+++++|.+.+.+ .-.........-...++..|..|..++++.+|..+|.+++.++++.+|....+..+.|
T Consensus 5 ~~~~eA~~~~~~a~k~~~~---~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~ 81 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKT---SFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQ 81 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCC---CSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCC---CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 1577799999999987255---6567888999999999999999998688899999999999999986997999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 24689998999986665554443448999999999699999999999998653312334103555211023778788999
Q 000487 1129 LGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTY 1208 (1463)
Q Consensus 1129 LG~lyR~lAee~~sk~~~~k~~~~~q~~YnKALe~ak~eY~kALriyg~aK~~l~~~~~~~~~~~~~Lwd~V~tqlA~TY 1208 (1463)
+|.+|+. ++.|.+|+++ |.+||.++.... . ....+.+|
T Consensus 82 lg~~~~~------------------~g~~~~A~~~----~~~Al~l~~~~g------------~--------~~~~a~~~ 119 (307)
T 2ifu_A 82 AGMMLKD------------------LQRMPEAVQY----IEKASVMYVENG------------T--------PDTAAMAL 119 (307)
T ss_dssp HHHHHHH------------------TTCGGGGHHH----HHHHHHHHHTTT------------C--------HHHHHHHH
T ss_pred HHHHHHH------------------CCCHHHHHHH----HHHHHHHHHHCC------------C--------HHHHHHHH
T ss_conf 9999986------------------7999999999----999999999859------------9--------89999999
Q ss_pred HHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 9999866303621233115654457777664101101000034789999999988650602466899999997643466-
Q 000487 1209 LRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQRD- 1287 (1463)
Q Consensus 1209 lnLG~LLqde~~ls~~ye~~~~~~~~~~~~~~~~eeleK~eIsa~Dai~eALkLyEslG~L~kqeAAyah~qLAs~yrd- 1287 (1463)
.+||.+|.. .. ++ +++ +++++|+.+++..| +...++.++++||..|..
T Consensus 120 ~~lg~~~~~-g~----~~---------------------~A~---~~~~~Al~~~~~~~--~~~~~~~~~~~lg~~~~~~ 168 (307)
T 2ifu_A 120 DRAGKLMEP-LD----LS---------------------KAV---HLYQQAAAVFENEE--RLRQAAELIGKASRLLVRQ 168 (307)
T ss_dssp HHHHHHHTT-TC----HH---------------------HHH---HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHC-CC----HH---------------------HHH---HHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHC
T ss_conf 999999873-89----99---------------------999---99999999998479--8547999999999999981
Q ss_pred --------HHHHHHHCCC
Q ss_conf --------7778641011
Q 000487 1288 --------CFLKFLESDH 1297 (1463)
Q Consensus 1288 --------~cLr~Le~d~ 1297 (1463)
+|.+.+++..
T Consensus 169 g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 169 QKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 889999999999999999
Done!