Query 000489
Match_columns 1463
No_of_seqs 610 out of 3229
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 10:30:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000489.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000489hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 9E-222 2E-226 2048.9 98.6 1306 2-1406 5-1404(1463)
2 PTZ00014 myosin-A; Provisional 100.0 5E-186 1E-190 1750.6 66.4 705 2-721 29-818 (821)
3 KOG0161 Myosin class II heavy 100.0 3E-169 6E-174 1656.0 88.7 713 3-753 27-830 (1930)
4 KOG0160 Myosin class V heavy c 100.0 7E-171 2E-175 1567.6 58.7 688 59-768 6-758 (862)
5 cd01384 MYSc_type_XI Myosin mo 100.0 1E-170 3E-175 1593.5 58.1 611 61-679 1-674 (674)
6 cd01377 MYSc_type_II Myosin mo 100.0 5E-167 1E-171 1571.3 58.2 604 59-675 3-693 (693)
7 cd01381 MYSc_type_VII Myosin m 100.0 6E-167 1E-171 1563.0 56.3 598 62-675 1-671 (671)
8 cd01380 MYSc_type_V Myosin mot 100.0 1E-166 3E-171 1567.3 57.2 601 62-675 1-691 (691)
9 KOG0163 Myosin class VI heavy 100.0 9E-164 2E-168 1409.7 73.0 720 4-752 2-837 (1259)
10 cd01383 MYSc_type_VIII Myosin 100.0 7E-166 2E-170 1551.2 56.7 597 59-675 6-677 (677)
11 cd01378 MYSc_type_I Myosin mot 100.0 2E-165 5E-170 1552.3 56.2 600 62-675 1-674 (674)
12 KOG0164 Myosin class I heavy c 100.0 7E-165 1E-169 1421.5 50.8 667 59-750 6-756 (1001)
13 cd01379 MYSc_type_III Myosin m 100.0 6E-164 1E-168 1528.8 56.8 596 62-675 1-653 (653)
14 cd01387 MYSc_type_XV Myosin mo 100.0 6E-164 1E-168 1537.2 56.5 598 61-675 1-677 (677)
15 cd01385 MYSc_type_IX Myosin mo 100.0 9E-164 2E-168 1538.7 58.4 600 60-675 6-688 (692)
16 cd01382 MYSc_type_VI Myosin mo 100.0 7E-164 2E-168 1544.9 57.2 600 60-674 3-715 (717)
17 smart00242 MYSc Myosin. Large 100.0 4E-160 9E-165 1512.7 57.8 605 59-676 4-677 (677)
18 cd01386 MYSc_type_XVIII Myosin 100.0 5E-159 1E-163 1501.5 55.5 597 63-675 2-767 (767)
19 cd00124 MYSc Myosin motor doma 100.0 9E-159 2E-163 1506.1 56.7 599 62-675 1-679 (679)
20 KOG0162 Myosin class I heavy c 100.0 5E-158 1E-162 1362.6 43.1 635 59-709 16-725 (1106)
21 PF00063 Myosin_head: Myosin h 100.0 5E-150 1E-154 1446.0 49.6 590 63-664 1-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 2E-104 4E-109 1002.5 23.0 690 59-770 59-1008(1062)
23 KOG1892 Actin filament-binding 100.0 1.5E-29 3.2E-34 301.0 20.9 292 1073-1430 560-865 (1629)
24 PF01843 DIL: DIL domain; Int 99.9 6.8E-28 1.5E-32 236.5 6.2 105 1281-1388 1-105 (105)
25 KOG0161 Myosin class II heavy 99.2 4.2E-07 9.1E-12 124.2 49.6 240 559-816 566-842 (1930)
26 COG5022 Myosin heavy chain [Cy 98.6 1.2E-05 2.6E-10 105.4 30.1 90 728-817 745-835 (1463)
27 cd01363 Motor_domain Myosin an 98.6 4.4E-08 9.5E-13 106.9 6.9 90 131-229 8-98 (186)
28 KOG0160 Myosin class V heavy c 98.6 1.8E-06 4E-11 109.9 21.8 86 728-816 673-758 (862)
29 KOG0520 Uncharacterized conser 98.3 7.2E-07 1.6E-11 113.4 7.2 128 678-822 808-937 (975)
30 PF02736 Myosin_N: Myosin N-te 98.2 3.2E-06 7E-11 68.1 6.5 41 6-47 1-41 (42)
31 KOG0520 Uncharacterized conser 98.0 7.3E-06 1.6E-10 104.5 5.7 130 681-816 757-906 (975)
32 KOG0971 Microtubule-associated 97.7 0.075 1.6E-06 67.1 34.0 57 832-888 296-355 (1243)
33 KOG0971 Microtubule-associated 97.6 0.033 7.2E-07 70.1 27.7 36 828-863 264-299 (1243)
34 KOG1029 Endocytic adaptor prot 97.4 0.075 1.6E-06 66.0 27.8 75 922-996 435-516 (1118)
35 KOG0250 DNA repair protein RAD 97.2 1.5 3.3E-05 57.8 38.2 128 864-993 336-463 (1074)
36 KOG1029 Endocytic adaptor prot 97.2 0.39 8.5E-06 60.0 30.9 24 1301-1324 1008-1031(1118)
37 KOG4229 Myosin VII, myosin IXB 97.1 0.00024 5.3E-09 93.4 2.9 268 549-818 644-1008(1062)
38 PRK11637 AmiB activator; Provi 97.1 0.18 3.9E-06 62.6 27.4 13 868-880 106-118 (428)
39 KOG0164 Myosin class I heavy c 97.0 0.0041 8.9E-08 76.2 11.7 80 729-818 697-786 (1001)
40 KOG0163 Myosin class VI heavy 97.0 1 2.2E-05 56.2 31.3 58 734-799 779-836 (1259)
41 PF09726 Macoilin: Transmembra 97.0 0.36 7.7E-06 62.8 29.6 24 974-997 630-653 (697)
42 TIGR02169 SMC_prok_A chromosom 97.0 2.3 5E-05 60.0 40.6 19 150-168 25-43 (1164)
43 PRK11637 AmiB activator; Provi 96.7 0.49 1.1E-05 58.8 27.4 12 867-878 112-123 (428)
44 KOG0996 Structural maintenance 96.7 4 8.7E-05 54.2 37.5 49 1336-1387 1169-1220(1293)
45 PF14662 CCDC155: Coiled-coil 96.7 0.21 4.6E-06 53.3 19.8 74 922-995 65-138 (193)
46 PF00612 IQ: IQ calmodulin-bin 96.7 0.0021 4.7E-08 43.7 3.4 20 777-796 2-21 (21)
47 PF12718 Tropomyosin_1: Tropom 96.6 0.29 6.3E-06 51.0 20.6 26 962-987 111-136 (143)
48 KOG0994 Extracellular matrix g 96.6 3 6.6E-05 54.7 32.3 59 937-995 1688-1746(1758)
49 KOG0933 Structural maintenance 96.6 1.5 3.3E-05 56.9 29.6 21 153-177 30-50 (1174)
50 PRK04863 mukB cell division pr 96.6 3 6.5E-05 58.9 35.5 33 961-993 444-476 (1486)
51 KOG2128 Ras GTPase-activating 96.5 0.054 1.2E-06 72.0 16.9 18 1308-1325 1192-1209(1401)
52 KOG0933 Structural maintenance 96.4 5.4 0.00012 52.2 34.4 11 653-663 619-629 (1174)
53 KOG0925 mRNA splicing factor A 96.4 0.0029 6.3E-08 74.8 4.2 57 100-165 23-79 (699)
54 PF12718 Tropomyosin_1: Tropom 96.3 0.65 1.4E-05 48.4 20.9 21 865-885 35-55 (143)
55 PF07888 CALCOCO1: Calcium bin 96.3 1.3 2.8E-05 55.2 26.5 18 603-620 39-56 (546)
56 KOG4643 Uncharacterized coiled 96.3 0.95 2.1E-05 58.6 25.5 13 838-850 413-425 (1195)
57 PF08317 Spc7: Spc7 kinetochor 96.3 1.7 3.6E-05 52.0 27.1 45 935-979 220-264 (325)
58 PF00612 IQ: IQ calmodulin-bin 96.3 0.0047 1E-07 42.0 3.2 19 729-747 2-20 (21)
59 COG1196 Smc Chromosome segrega 96.2 10 0.00023 53.3 40.1 37 950-986 451-487 (1163)
60 PHA02562 46 endonuclease subun 96.2 1.7 3.8E-05 56.0 28.8 14 600-613 43-56 (562)
61 KOG0980 Actin-binding protein 96.2 0.91 2E-05 58.1 24.2 37 1340-1379 850-887 (980)
62 PF09726 Macoilin: Transmembra 96.1 6.4 0.00014 51.6 32.3 68 925-992 588-655 (697)
63 PRK03918 chromosome segregatio 96.0 2.1 4.6E-05 58.5 29.9 18 151-168 26-43 (880)
64 COG1196 Smc Chromosome segrega 96.0 12 0.00027 52.6 39.8 59 937-995 403-461 (1163)
65 KOG0250 DNA repair protein RAD 96.0 9.2 0.0002 51.0 39.3 14 730-743 179-192 (1074)
66 PRK02224 chromosome segregatio 96.0 4.3 9.4E-05 55.5 32.5 11 1391-1401 823-833 (880)
67 TIGR02168 SMC_prok_B chromosom 95.9 14 0.0003 52.3 40.1 8 643-650 125-132 (1179)
68 PHA02562 46 endonuclease subun 95.9 2.7 5.8E-05 54.3 28.4 16 922-937 304-319 (562)
69 KOG2128 Ras GTPase-activating 95.8 0.14 3.1E-06 68.2 15.7 90 710-799 542-645 (1401)
70 KOG0996 Structural maintenance 95.6 13 0.00028 49.7 35.7 37 569-605 108-149 (1293)
71 PF15070 GOLGA2L5: Putative go 95.6 4.3 9.4E-05 52.3 27.7 28 919-946 155-182 (617)
72 COG1579 Zn-ribbon protein, pos 95.5 2.9 6.3E-05 47.0 22.7 12 870-881 57-68 (239)
73 COG4372 Uncharacterized protei 95.4 7.5 0.00016 45.6 28.7 9 1225-1233 470-478 (499)
74 TIGR02168 SMC_prok_B chromosom 95.4 20 0.00044 50.6 41.4 9 576-584 30-38 (1179)
75 PRK09039 hypothetical protein; 95.4 3.2 6.9E-05 49.9 24.1 46 919-964 132-177 (343)
76 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.3 2.8 6.2E-05 43.1 20.5 33 964-996 96-128 (132)
77 PRK09039 hypothetical protein; 95.3 1.2 2.5E-05 53.6 20.3 67 918-984 117-183 (343)
78 PF15066 CAGE1: Cancer-associa 95.3 6.3 0.00014 47.4 25.2 46 867-912 385-430 (527)
79 smart00787 Spc7 Spc7 kinetocho 95.2 6.8 0.00015 46.3 25.6 24 957-980 237-260 (312)
80 KOG1853 LIS1-interacting prote 95.2 6.2 0.00013 43.6 22.7 33 920-952 94-126 (333)
81 KOG4643 Uncharacterized coiled 95.1 9.6 0.00021 50.0 27.5 26 936-961 528-553 (1195)
82 KOG0994 Extracellular matrix g 95.0 15 0.00032 48.8 28.9 38 83-120 192-229 (1758)
83 KOG0999 Microtubule-associated 94.9 4.9 0.00011 49.0 23.2 11 983-993 204-214 (772)
84 smart00015 IQ Short calmodulin 94.9 0.026 5.6E-07 40.6 2.8 21 776-796 3-23 (26)
85 TIGR00606 rad50 rad50. This fa 94.8 5.7 0.00012 56.6 28.1 20 149-168 29-48 (1311)
86 PF00261 Tropomyosin: Tropomyo 94.8 9.4 0.0002 43.5 27.1 12 874-885 94-105 (237)
87 KOG0995 Centromere-associated 94.8 15 0.00033 45.7 29.8 24 792-815 265-288 (581)
88 KOG1853 LIS1-interacting prote 94.6 8.9 0.00019 42.4 24.7 22 970-991 161-182 (333)
89 PRK03918 chromosome segregatio 94.6 20 0.00043 49.1 32.2 15 1391-1405 824-838 (880)
90 PF09728 Taxilin: Myosin-like 94.6 13 0.00028 44.1 28.6 55 942-996 213-267 (309)
91 COG4372 Uncharacterized protei 94.6 13 0.00027 43.9 28.5 27 960-986 253-279 (499)
92 PRK07196 fliI flagellum-specif 94.5 0.081 1.7E-06 64.8 7.7 42 131-172 138-179 (434)
93 PTZ00014 myosin-A; Provisional 94.5 0.09 1.9E-06 69.5 8.6 42 776-817 777-818 (821)
94 PF10481 CENP-F_N: Cenp-F N-te 94.5 3.8 8.1E-05 46.0 19.4 31 965-995 161-191 (307)
95 COG4942 Membrane-bound metallo 94.5 16 0.00034 44.5 27.5 22 965-986 223-244 (420)
96 PF14662 CCDC155: Coiled-coil 94.5 8.6 0.00019 41.5 26.1 103 891-996 79-188 (193)
97 PF13851 GAS: Growth-arrest sp 94.5 7.7 0.00017 42.9 22.3 57 900-956 76-132 (201)
98 KOG0964 Structural maintenance 94.5 7 0.00015 51.0 24.1 38 955-992 338-375 (1200)
99 PF10473 CENP-F_leu_zip: Leuci 94.2 7.8 0.00017 40.1 21.2 20 866-885 18-37 (140)
100 PF13207 AAA_17: AAA domain; P 94.2 0.033 7.2E-07 55.9 2.9 23 150-172 1-23 (121)
101 PF00261 Tropomyosin: Tropomyo 94.1 13 0.00028 42.3 25.7 54 937-990 175-228 (237)
102 PF06785 UPF0242: Uncharacteri 94.1 11 0.00023 43.6 22.3 23 864-886 98-120 (401)
103 PF10473 CENP-F_leu_zip: Leuci 94.1 6.5 0.00014 40.7 19.1 56 931-986 59-114 (140)
104 smart00015 IQ Short calmodulin 94.1 0.049 1.1E-06 39.2 2.8 19 729-747 4-22 (26)
105 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.1 7.5 0.00016 40.0 19.9 67 917-983 59-129 (132)
106 KOG1103 Predicted coiled-coil 94.1 14 0.0003 42.6 23.1 48 946-993 246-293 (561)
107 PF09789 DUF2353: Uncharacteri 94.1 16 0.00035 43.0 25.0 29 968-996 191-219 (319)
108 PF08317 Spc7: Spc7 kinetochor 94.0 18 0.00039 43.3 26.5 78 917-994 209-290 (325)
109 KOG0964 Structural maintenance 94.0 12 0.00025 49.1 24.7 21 834-854 301-321 (1200)
110 PF04091 Sec15: Exocyst comple 93.9 0.25 5.3E-06 58.5 9.9 133 1250-1383 176-311 (311)
111 PRK04863 mukB cell division pr 93.9 45 0.00098 47.7 40.9 12 610-621 125-136 (1486)
112 PF05667 DUF812: Protein of un 93.8 5.6 0.00012 51.0 22.1 37 956-992 444-480 (594)
113 COG1340 Uncharacterized archae 93.8 16 0.00036 42.2 24.8 10 868-877 110-119 (294)
114 PF05701 WEMBL: Weak chloropla 93.8 22 0.00047 45.4 27.5 15 919-933 339-353 (522)
115 KOG0977 Nuclear envelope prote 93.7 20 0.00043 45.1 25.8 68 919-986 150-217 (546)
116 KOG0995 Centromere-associated 93.5 15 0.00031 45.9 23.6 18 916-933 307-324 (581)
117 PF08614 ATG16: Autophagy prot 93.4 0.86 1.9E-05 50.2 12.5 64 916-993 115-178 (194)
118 PRK02224 chromosome segregatio 93.4 43 0.00093 45.9 40.9 23 648-671 121-143 (880)
119 PF12128 DUF3584: Protein of u 93.4 52 0.0011 46.7 40.8 15 1391-1405 1066-1081(1201)
120 PF15254 CCDC14: Coiled-coil d 93.2 7.2 0.00016 49.8 20.9 54 919-972 489-542 (861)
121 PF05667 DUF812: Protein of un 93.2 7.7 0.00017 49.8 21.9 38 961-998 442-479 (594)
122 KOG2129 Uncharacterized conser 93.1 24 0.00051 42.0 25.1 11 776-786 84-94 (552)
123 KOG0977 Nuclear envelope prote 93.0 18 0.00038 45.6 23.7 22 688-709 49-70 (546)
124 KOG0980 Actin-binding protein 92.9 39 0.00086 44.1 32.8 27 550-576 225-252 (980)
125 PF13401 AAA_22: AAA domain; P 92.9 0.068 1.5E-06 54.3 2.7 29 146-174 2-30 (131)
126 PF15619 Lebercilin: Ciliary p 92.8 18 0.00039 39.8 26.2 29 919-947 120-148 (194)
127 smart00787 Spc7 Spc7 kinetocho 92.8 26 0.00056 41.6 24.7 12 982-993 273-284 (312)
128 PF13238 AAA_18: AAA domain; P 92.7 0.075 1.6E-06 53.6 2.7 22 151-172 1-22 (129)
129 PF13870 DUF4201: Domain of un 92.6 18 0.00039 39.2 24.4 24 865-888 49-72 (177)
130 PRK01156 chromosome segregatio 92.5 34 0.00073 47.0 28.6 76 918-993 357-443 (895)
131 PF13191 AAA_16: AAA ATPase do 92.5 0.086 1.9E-06 57.0 3.0 33 143-175 19-51 (185)
132 KOG0612 Rho-associated, coiled 92.4 26 0.00057 47.3 25.1 18 392-413 123-140 (1317)
133 PF04111 APG6: Autophagy prote 92.4 2 4.4E-05 50.8 14.5 11 1254-1264 289-299 (314)
134 PF04156 IncA: IncA protein; 92.4 6.3 0.00014 43.2 17.5 24 963-986 162-185 (191)
135 KOG4674 Uncharacterized conser 92.3 72 0.0016 45.7 33.1 19 792-810 660-678 (1822)
136 KOG4360 Uncharacterized coiled 92.3 9.5 0.00021 46.5 19.3 75 919-993 228-302 (596)
137 cd02019 NK Nucleoside/nucleoti 92.3 0.11 2.4E-06 46.9 2.9 22 151-172 2-23 (69)
138 PF14915 CCDC144C: CCDC144C pr 92.2 26 0.00057 40.4 28.1 133 866-998 85-239 (305)
139 KOG0963 Transcription factor/C 92.0 43 0.00092 42.4 27.3 19 915-933 247-265 (629)
140 TIGR02322 phosphon_PhnN phosph 92.0 0.1 2.3E-06 56.4 2.9 25 149-173 2-26 (179)
141 PF10186 Atg14: UV radiation r 91.9 12 0.00025 44.0 20.4 29 919-947 72-100 (302)
142 PLN03188 kinesin-12 family pro 91.9 49 0.0011 45.3 27.0 36 130-165 148-183 (1320)
143 cd00009 AAA The AAA+ (ATPases 91.9 0.19 4.2E-06 51.3 4.6 29 145-173 16-44 (151)
144 PF04156 IncA: IncA protein; 91.8 7.5 0.00016 42.6 17.3 8 873-880 89-96 (191)
145 PF13851 GAS: Growth-arrest sp 91.8 25 0.00053 39.0 26.7 29 929-957 98-126 (201)
146 PF12325 TMF_TATA_bd: TATA ele 91.7 9.2 0.0002 38.6 15.9 16 965-980 95-110 (120)
147 PF10146 zf-C4H2: Zinc finger- 91.7 5.3 0.00012 45.0 15.9 28 968-995 76-103 (230)
148 COG0444 DppD ABC-type dipeptid 91.6 0.1 2.3E-06 60.4 2.4 28 146-173 29-56 (316)
149 TIGR03015 pepcterm_ATPase puta 91.6 0.18 3.8E-06 58.4 4.4 28 146-173 41-68 (269)
150 PRK08972 fliI flagellum-specif 91.6 0.34 7.4E-06 59.3 6.8 40 132-171 146-185 (444)
151 KOG1962 B-cell receptor-associ 91.6 2.4 5.2E-05 46.7 12.5 57 922-978 149-205 (216)
152 TIGR00150 HI0065_YjeE ATPase, 91.5 0.26 5.6E-06 50.6 4.9 27 146-172 20-46 (133)
153 PRK01156 chromosome segregatio 91.5 72 0.0016 43.9 40.4 20 1257-1276 733-752 (895)
154 PF09730 BicD: Microtubule-ass 91.5 44 0.00096 43.7 25.5 43 919-961 99-144 (717)
155 PF04849 HAP1_N: HAP1 N-termin 91.4 21 0.00046 41.6 20.4 9 985-993 295-303 (306)
156 PF12325 TMF_TATA_bd: TATA ele 91.3 10 0.00022 38.3 15.7 17 868-884 19-35 (120)
157 PF09730 BicD: Microtubule-ass 91.2 36 0.00077 44.6 24.4 18 1196-1213 445-465 (717)
158 PF09789 DUF2353: Uncharacteri 91.2 21 0.00046 42.0 20.5 47 952-998 126-172 (319)
159 PF10146 zf-C4H2: Zinc finger- 91.2 7.9 0.00017 43.6 16.5 63 919-981 41-103 (230)
160 COG0194 Gmk Guanylate kinase [ 91.1 0.14 3.1E-06 54.8 2.5 25 148-172 4-28 (191)
161 PRK06696 uridine kinase; Valid 91.0 0.27 5.9E-06 55.4 5.0 40 133-174 9-48 (223)
162 PF00485 PRK: Phosphoribulokin 91.0 0.15 3.2E-06 56.2 2.7 25 151-175 2-26 (194)
163 PRK05480 uridine/cytidine kina 90.9 0.19 4.1E-06 56.0 3.6 27 146-172 4-30 (209)
164 PF01583 APS_kinase: Adenylyls 90.9 0.24 5.1E-06 52.3 4.0 29 148-176 2-30 (156)
165 KOG0976 Rho/Rac1-interacting s 90.9 60 0.0013 41.8 31.0 30 962-991 479-508 (1265)
166 cd00820 PEPCK_HprK Phosphoenol 90.9 0.18 3.9E-06 49.6 2.9 24 146-169 13-36 (107)
167 cd01918 HprK_C HprK/P, the bif 90.8 0.18 3.9E-06 52.7 3.0 25 147-171 13-37 (149)
168 PF00004 AAA: ATPase family as 90.8 0.16 3.4E-06 51.5 2.6 23 151-173 1-23 (132)
169 PRK00300 gmk guanylate kinase; 90.7 0.16 3.5E-06 56.2 2.8 26 147-172 4-29 (205)
170 KOG4593 Mitotic checkpoint pro 90.7 60 0.0013 41.6 33.1 24 1364-1387 631-661 (716)
171 PRK09270 nucleoside triphospha 90.7 0.37 8.1E-06 54.5 5.7 34 144-177 29-62 (229)
172 PF06160 EzrA: Septation ring 90.6 63 0.0014 41.7 28.4 43 956-998 390-432 (560)
173 cd01131 PilT Pilus retraction 90.6 0.17 3.7E-06 55.9 2.8 25 150-174 3-27 (198)
174 cd02023 UMPK Uridine monophosp 90.6 0.17 3.7E-06 55.8 2.8 22 151-172 2-23 (198)
175 PRK10884 SH3 domain-containing 90.6 2.9 6.4E-05 46.3 12.3 31 964-994 137-167 (206)
176 PF08614 ATG16: Autophagy prot 90.6 2 4.4E-05 47.3 11.1 54 916-969 122-175 (194)
177 COG5185 HEC1 Protein involved 90.5 21 0.00045 43.1 19.4 35 1059-1093 487-521 (622)
178 PRK13833 conjugal transfer pro 90.4 0.27 5.8E-06 58.2 4.4 44 125-174 127-170 (323)
179 KOG0018 Structural maintenance 90.4 80 0.0017 42.5 30.8 45 570-618 26-75 (1141)
180 PF04849 HAP1_N: HAP1 N-termin 90.4 42 0.00091 39.3 26.3 64 930-993 233-296 (306)
181 COG4026 Uncharacterized protei 90.3 2.3 5E-05 46.0 10.6 23 922-944 147-169 (290)
182 PF10498 IFT57: Intra-flagella 90.3 9.8 0.00021 45.9 17.3 11 581-591 61-71 (359)
183 PTZ00301 uridine kinase; Provi 90.3 0.19 4.2E-06 55.9 2.9 23 151-173 6-28 (210)
184 PF10174 Cast: RIM-binding pro 90.2 78 0.0017 42.1 34.8 75 919-993 467-541 (775)
185 PF00769 ERM: Ezrin/radixin/mo 90.2 18 0.00039 41.4 18.7 12 871-882 11-22 (246)
186 TIGR01843 type_I_hlyD type I s 90.1 44 0.00096 41.2 24.0 20 975-994 248-267 (423)
187 TIGR00235 udk uridine kinase. 90.0 0.24 5.3E-06 55.1 3.4 28 146-173 4-31 (207)
188 cd01129 PulE-GspE PulE/GspE Th 90.0 0.32 6.9E-06 56.3 4.4 35 139-174 72-106 (264)
189 PRK10884 SH3 domain-containing 90.0 4.3 9.3E-05 45.0 12.9 9 870-878 98-106 (206)
190 PF10168 Nup88: Nuclear pore c 89.9 19 0.0004 47.6 20.8 20 566-585 422-441 (717)
191 PRK08233 hypothetical protein; 89.9 0.18 4E-06 54.4 2.3 25 149-173 4-28 (182)
192 PRK05541 adenylylsulfate kinas 89.9 0.23 5E-06 53.7 3.0 29 146-174 5-33 (176)
193 TIGR01843 type_I_hlyD type I s 89.9 46 0.00099 41.1 23.8 25 965-989 245-269 (423)
194 PRK04778 septation ring format 89.8 74 0.0016 41.3 35.9 12 834-845 224-235 (569)
195 PF04111 APG6: Autophagy prote 89.8 5.3 0.00012 47.4 14.4 7 1067-1073 181-187 (314)
196 KOG2991 Splicing regulator [RN 89.7 38 0.00083 37.8 28.3 53 942-994 254-306 (330)
197 PF09755 DUF2046: Uncharacteri 89.7 47 0.001 38.8 27.6 22 977-998 182-203 (310)
198 TIGR02173 cyt_kin_arch cytidyl 89.6 0.21 4.6E-06 53.3 2.5 23 150-172 2-24 (171)
199 KOG4360 Uncharacterized coiled 89.6 28 0.0006 42.7 19.7 25 959-983 275-299 (596)
200 KOG4674 Uncharacterized conser 89.6 1.2E+02 0.0027 43.5 40.1 40 862-901 795-834 (1822)
201 cd02028 UMPK_like Uridine mono 89.6 0.24 5.3E-06 53.8 2.9 24 151-174 2-25 (179)
202 PRK12402 replication factor C 89.5 0.41 9E-06 57.3 5.2 56 116-173 6-61 (337)
203 PRK06315 type III secretion sy 89.5 0.54 1.2E-05 57.9 6.1 36 137-172 153-188 (442)
204 PF15070 GOLGA2L5: Putative go 89.5 79 0.0017 41.1 31.3 12 1418-1429 594-605 (617)
205 PF00038 Filament: Intermediat 89.5 52 0.0011 39.0 32.2 202 788-996 15-278 (312)
206 cd02020 CMPK Cytidine monophos 89.5 0.25 5.4E-06 51.2 2.8 22 151-172 2-23 (147)
207 cd02025 PanK Pantothenate kina 89.5 0.24 5.2E-06 55.7 2.8 23 151-173 2-24 (220)
208 cd01130 VirB11-like_ATPase Typ 89.5 0.4 8.7E-06 52.4 4.5 43 125-173 8-50 (186)
209 PHA02544 44 clamp loader, smal 89.4 0.39 8.5E-06 57.1 4.8 53 116-172 12-67 (316)
210 KOG0982 Centrosomal protein Nu 89.4 57 0.0012 39.3 22.4 31 917-947 304-334 (502)
211 PRK06762 hypothetical protein; 89.4 0.26 5.5E-06 52.7 2.9 24 149-172 3-26 (166)
212 smart00382 AAA ATPases associa 89.3 0.23 5E-06 50.1 2.4 28 148-175 2-29 (148)
213 PF14197 Cep57_CLD_2: Centroso 89.3 3.5 7.6E-05 37.3 9.4 63 922-984 3-65 (69)
214 KOG0946 ER-Golgi vesicle-tethe 89.2 43 0.00093 43.4 21.8 15 356-370 147-161 (970)
215 PRK07261 topology modulation p 89.2 0.26 5.6E-06 53.1 2.7 23 150-172 2-24 (171)
216 TIGR03420 DnaA_homol_Hda DnaA 89.2 0.5 1.1E-05 53.1 5.2 38 137-174 27-64 (226)
217 PRK09099 type III secretion sy 89.1 0.71 1.5E-05 56.9 6.7 36 137-172 152-187 (441)
218 TIGR00554 panK_bact pantothena 89.0 0.71 1.5E-05 54.0 6.3 30 146-175 60-89 (290)
219 COG2433 Uncharacterized conser 89.0 5.1 0.00011 50.0 13.6 75 919-993 431-508 (652)
220 PF06785 UPF0242: Uncharacteri 88.9 53 0.0011 38.3 21.8 36 919-954 136-171 (401)
221 cd00227 CPT Chloramphenicol (C 88.9 0.32 7E-06 52.5 3.2 25 148-172 2-26 (175)
222 PRK08118 topology modulation p 88.8 0.31 6.7E-06 52.3 3.0 25 149-173 2-26 (167)
223 PRK06547 hypothetical protein; 88.8 0.55 1.2E-05 50.7 4.9 28 145-172 12-39 (172)
224 COG1660 Predicted P-loop-conta 88.6 0.26 5.5E-06 55.3 2.2 19 150-168 3-21 (286)
225 PRK14737 gmk guanylate kinase; 88.5 0.28 6.1E-06 53.6 2.5 25 148-172 4-28 (186)
226 TIGR02782 TrbB_P P-type conjug 88.5 0.6 1.3E-05 55.0 5.4 27 148-174 132-158 (299)
227 PRK00131 aroK shikimate kinase 88.5 0.37 8E-06 51.6 3.3 26 147-172 3-28 (175)
228 PF10481 CENP-F_N: Cenp-F N-te 88.4 20 0.00042 40.6 16.3 32 962-993 98-129 (307)
229 PF07724 AAA_2: AAA domain (Cd 88.4 0.38 8.3E-06 51.8 3.3 24 150-173 5-28 (171)
230 PRK14961 DNA polymerase III su 88.3 0.69 1.5E-05 56.2 5.9 56 116-173 7-63 (363)
231 TIGR00606 rad50 rad50. This fa 88.3 1.5E+02 0.0032 42.7 38.1 7 305-311 141-147 (1311)
232 PRK00889 adenylylsulfate kinas 88.2 0.49 1.1E-05 51.1 4.1 29 147-175 3-31 (175)
233 KOG0979 Structural maintenance 88.1 73 0.0016 42.5 23.4 14 1268-1281 851-864 (1072)
234 cd02024 NRK1 Nicotinamide ribo 88.1 0.31 6.7E-06 53.2 2.4 22 151-172 2-23 (187)
235 KOG1937 Uncharacterized conser 88.1 71 0.0015 38.8 24.1 14 981-994 503-516 (521)
236 PF03668 ATP_bind_2: P-loop AT 88.1 0.32 6.8E-06 56.0 2.6 20 149-168 2-21 (284)
237 KOG0979 Structural maintenance 88.0 31 0.00068 45.7 20.1 18 867-884 204-221 (1072)
238 PRK10078 ribose 1,5-bisphospho 88.0 0.29 6.3E-06 53.5 2.2 25 148-172 2-26 (186)
239 KOG1003 Actin filament-coating 88.0 44 0.00095 36.3 24.7 24 965-988 164-187 (205)
240 COG0572 Udk Uridine kinase [Nu 87.9 0.36 7.7E-06 53.5 2.8 26 148-173 6-33 (218)
241 TIGR01313 therm_gnt_kin carboh 87.9 0.28 6.1E-06 52.2 1.9 23 151-173 1-23 (163)
242 KOG4673 Transcription factor T 87.9 90 0.002 39.7 33.8 54 919-972 706-759 (961)
243 cd00071 GMPK Guanosine monopho 87.8 0.3 6.5E-06 50.6 2.0 23 151-173 2-24 (137)
244 PF05701 WEMBL: Weak chloropla 87.7 94 0.002 39.8 31.5 14 982-995 339-352 (522)
245 KOG0946 ER-Golgi vesicle-tethe 87.7 1E+02 0.0022 40.2 24.8 30 915-944 804-833 (970)
246 COG1102 Cmk Cytidylate kinase 87.6 0.41 8.9E-06 50.1 2.8 23 151-173 3-25 (179)
247 PF00910 RNA_helicase: RNA hel 87.6 0.38 8.2E-06 47.5 2.6 25 151-175 1-25 (107)
248 PF05729 NACHT: NACHT domain 87.6 0.44 9.6E-06 50.2 3.3 27 150-176 2-28 (166)
249 PF07888 CALCOCO1: Calcium bin 87.6 91 0.002 39.5 38.5 46 953-998 358-403 (546)
250 KOG0249 LAR-interacting protei 87.6 54 0.0012 41.9 20.9 20 1302-1329 756-775 (916)
251 PF13245 AAA_19: Part of AAA d 87.4 0.67 1.4E-05 42.8 3.8 28 147-174 9-36 (76)
252 PRK08472 fliI flagellum-specif 87.4 2 4.3E-05 53.0 8.9 41 132-172 141-181 (434)
253 COG4172 ABC-type uncharacteriz 87.3 0.31 6.8E-06 57.6 2.0 28 148-175 36-63 (534)
254 KOG0243 Kinesin-like protein [ 87.3 45 0.00097 44.9 21.3 18 305-322 100-117 (1041)
255 PF04437 RINT1_TIP1: RINT-1 / 87.3 5.1 0.00011 50.8 13.0 124 1251-1380 353-491 (494)
256 PRK08084 DNA replication initi 87.2 0.85 1.8E-05 51.9 5.4 40 135-174 32-71 (235)
257 PRK14738 gmk guanylate kinase; 87.2 0.43 9.4E-06 53.1 3.0 26 146-171 11-36 (206)
258 PF12128 DUF3584: Protein of u 87.2 1.6E+02 0.0035 41.9 43.5 25 148-172 17-41 (1201)
259 PRK05688 fliI flagellum-specif 87.1 0.63 1.4E-05 57.3 4.5 41 131-171 151-191 (451)
260 PLN03025 replication factor C 87.1 0.68 1.5E-05 55.2 4.8 56 116-173 4-59 (319)
261 PF11559 ADIP: Afadin- and alp 87.1 28 0.00061 36.6 16.4 13 983-995 136-148 (151)
262 KOG3684 Ca2+-activated K+ chan 87.1 24 0.00051 43.0 17.1 41 757-797 345-385 (489)
263 TIGR02928 orc1/cdc6 family rep 87.1 0.6 1.3E-05 56.7 4.4 36 139-174 31-66 (365)
264 KOG4673 Transcription factor T 87.0 1E+02 0.0022 39.4 30.8 6 572-577 336-341 (961)
265 TIGR01420 pilT_fam pilus retra 87.0 0.4 8.8E-06 57.7 2.8 26 148-173 122-147 (343)
266 cd02027 APSK Adenosine 5'-phos 86.9 0.47 1E-05 49.9 2.9 24 151-174 2-25 (149)
267 KOG0804 Cytoplasmic Zn-finger 86.9 31 0.00067 41.8 17.7 12 603-614 104-115 (493)
268 PF12846 AAA_10: AAA-like doma 86.8 0.49 1.1E-05 55.4 3.3 29 148-176 1-29 (304)
269 COG4026 Uncharacterized protei 86.8 15 0.00032 40.1 13.7 35 920-954 152-186 (290)
270 PTZ00112 origin recognition co 86.8 1.2 2.5E-05 58.2 6.7 45 131-175 764-808 (1164)
271 COG4608 AppF ABC-type oligopep 86.7 0.42 9.2E-06 54.4 2.5 32 146-177 37-68 (268)
272 PRK14956 DNA polymerase III su 86.7 0.74 1.6E-05 57.1 4.8 54 117-174 10-66 (484)
273 KOG0612 Rho-associated, coiled 86.6 1.4E+02 0.0031 40.8 33.2 16 1259-1274 1023-1038(1317)
274 PRK04778 septation ring format 86.5 1.1E+02 0.0025 39.5 30.3 13 981-993 419-431 (569)
275 KOG1103 Predicted coiled-coil 86.5 71 0.0015 37.1 21.7 36 959-994 245-280 (561)
276 TIGR03263 guanyl_kin guanylate 86.5 0.36 7.9E-06 52.2 1.9 25 149-173 2-26 (180)
277 PRK06217 hypothetical protein; 86.5 0.44 9.5E-06 51.9 2.5 24 150-173 3-26 (183)
278 PRK06936 type III secretion sy 86.4 1.2 2.5E-05 54.8 6.3 41 132-172 146-186 (439)
279 COG0529 CysC Adenylylsulfate k 86.4 0.9 2E-05 48.3 4.5 44 133-177 9-52 (197)
280 PRK11281 hypothetical protein; 86.4 1.1E+02 0.0024 42.6 25.2 19 870-888 126-144 (1113)
281 cd00464 SK Shikimate kinase (S 86.4 0.47 1E-05 49.7 2.6 23 150-172 1-23 (154)
282 PF13671 AAA_33: AAA domain; P 86.3 0.4 8.6E-06 49.6 2.0 23 151-173 2-24 (143)
283 PRK10751 molybdopterin-guanine 86.3 0.52 1.1E-05 50.7 2.9 26 150-175 8-33 (173)
284 KOG0804 Cytoplasmic Zn-finger 86.3 37 0.00081 41.1 17.9 25 482-506 120-144 (493)
285 cd01120 RecA-like_NTPases RecA 86.2 0.56 1.2E-05 49.1 3.1 25 151-175 2-26 (165)
286 PRK03846 adenylylsulfate kinas 86.2 0.85 1.8E-05 50.4 4.6 31 145-175 21-51 (198)
287 TIGR02524 dot_icm_DotB Dot/Icm 86.2 0.49 1.1E-05 57.1 2.9 28 147-174 133-160 (358)
288 KOG0978 E3 ubiquitin ligase in 86.2 1.2E+02 0.0026 39.5 37.3 77 922-998 543-619 (698)
289 PRK13900 type IV secretion sys 86.2 0.67 1.5E-05 55.4 4.0 25 149-173 161-185 (332)
290 TIGR02546 III_secr_ATP type II 86.1 1.6 3.5E-05 53.8 7.4 37 136-172 133-169 (422)
291 PF15066 CAGE1: Cancer-associa 86.0 93 0.002 38.0 28.4 16 396-411 50-65 (527)
292 PF05483 SCP-1: Synaptonemal c 85.9 1.2E+02 0.0025 39.0 28.0 183 815-997 411-625 (786)
293 PF03266 NTPase_1: NTPase; In 85.9 0.57 1.2E-05 50.3 2.9 24 151-174 2-25 (168)
294 KOG0982 Centrosomal protein Nu 85.8 90 0.002 37.7 23.3 17 865-881 297-313 (502)
295 cd02029 PRK_like Phosphoribulo 85.8 0.59 1.3E-05 53.5 3.1 25 151-175 2-26 (277)
296 PRK12377 putative replication 85.8 1.2 2.5E-05 51.1 5.5 45 129-175 84-128 (248)
297 KOG4809 Rab6 GTPase-interactin 85.7 1E+02 0.0022 38.3 21.6 79 915-993 329-407 (654)
298 TIGR02525 plasmid_TraJ plasmid 85.6 0.55 1.2E-05 56.8 2.9 27 148-174 149-175 (372)
299 PRK06645 DNA polymerase III su 85.6 0.91 2E-05 57.2 4.9 56 117-175 13-70 (507)
300 PRK12608 transcription termina 85.5 0.69 1.5E-05 55.5 3.7 42 133-174 118-159 (380)
301 KOG1899 LAR transmembrane tyro 85.5 28 0.00061 43.4 16.8 19 1311-1329 710-728 (861)
302 PF10205 KLRAQ: Predicted coil 85.4 12 0.00027 36.3 11.1 71 922-992 3-73 (102)
303 COG3883 Uncharacterized protei 85.3 77 0.0017 36.4 25.2 20 831-850 43-62 (265)
304 KOG1962 B-cell receptor-associ 85.2 16 0.00035 40.4 13.5 62 937-998 150-211 (216)
305 TIGR02902 spore_lonB ATP-depen 85.2 0.88 1.9E-05 58.0 4.7 30 143-172 81-110 (531)
306 PF03205 MobB: Molybdopterin g 85.2 0.69 1.5E-05 48.1 3.1 27 150-176 2-28 (140)
307 cd02021 GntK Gluconate kinase 85.1 0.56 1.2E-05 49.1 2.4 22 151-172 2-23 (150)
308 PRK00411 cdc6 cell division co 85.1 0.93 2E-05 55.6 4.7 35 141-175 48-82 (394)
309 PRK07667 uridine kinase; Provi 85.0 0.69 1.5E-05 50.9 3.1 26 149-174 18-43 (193)
310 TIGR03497 FliI_clade2 flagella 85.0 1.9 4.1E-05 53.0 7.1 36 137-172 126-161 (413)
311 PF02367 UPF0079: Uncharacteri 85.0 0.68 1.5E-05 46.9 2.8 27 146-172 13-39 (123)
312 COG4477 EzrA Negative regulato 84.9 1.1E+02 0.0024 38.2 21.4 64 917-980 347-410 (570)
313 PRK11281 hypothetical protein; 84.8 1.1E+02 0.0024 42.6 24.0 25 971-995 283-307 (1113)
314 PF03215 Rad17: Rad17 cell cyc 84.8 0.8 1.7E-05 57.9 4.0 58 115-172 9-69 (519)
315 PRK13851 type IV secretion sys 84.8 0.49 1.1E-05 56.7 2.0 26 148-173 162-187 (344)
316 PRK05896 DNA polymerase III su 84.8 1.1 2.5E-05 57.0 5.2 59 115-175 6-65 (605)
317 KOG4809 Rab6 GTPase-interactin 84.8 1E+02 0.0022 38.3 20.8 24 862-885 335-358 (654)
318 PRK13894 conjugal transfer ATP 84.8 1.2 2.6E-05 52.9 5.2 27 148-174 148-174 (319)
319 PF00437 T2SE: Type II/IV secr 84.7 0.58 1.3E-05 54.3 2.6 28 147-174 126-153 (270)
320 COG0563 Adk Adenylate kinase a 84.7 0.67 1.5E-05 50.3 2.8 22 151-172 3-24 (178)
321 PRK08903 DnaA regulatory inact 84.7 1.4 3.1E-05 49.6 5.7 30 146-175 40-69 (227)
322 PF06637 PV-1: PV-1 protein (P 84.6 39 0.00085 39.9 16.7 109 838-955 279-387 (442)
323 PRK14964 DNA polymerase III su 84.6 1.1 2.4E-05 56.1 5.0 57 116-175 4-62 (491)
324 COG4172 ABC-type uncharacteriz 84.6 0.57 1.2E-05 55.6 2.3 30 146-175 311-340 (534)
325 PF07111 HCR: Alpha helical co 84.5 1.4E+02 0.003 38.7 24.5 23 966-988 242-264 (739)
326 PF08826 DMPK_coil: DMPK coile 84.4 13 0.00028 32.8 9.9 42 945-986 18-59 (61)
327 PRK09111 DNA polymerase III su 84.4 0.91 2E-05 58.4 4.2 57 117-175 16-73 (598)
328 PRK00440 rfc replication facto 84.4 1.4 3.1E-05 52.2 5.7 55 117-173 9-63 (319)
329 COG1123 ATPase components of v 84.3 0.54 1.2E-05 58.7 2.1 30 146-175 33-62 (539)
330 PRK04040 adenylate kinase; Pro 84.3 0.69 1.5E-05 50.7 2.7 25 149-173 3-27 (188)
331 COG1124 DppF ABC-type dipeptid 84.2 0.73 1.6E-05 51.5 2.8 29 146-174 31-59 (252)
332 PRK04182 cytidylate kinase; Pr 84.2 0.65 1.4E-05 50.0 2.5 23 150-172 2-24 (180)
333 PRK05057 aroK shikimate kinase 84.2 0.77 1.7E-05 49.5 3.0 25 148-172 4-28 (172)
334 TIGR03496 FliI_clade1 flagella 84.2 1.2 2.5E-05 54.7 4.9 37 136-172 125-161 (411)
335 PRK07721 fliI flagellum-specif 84.1 2.3 5.1E-05 52.6 7.5 41 132-172 142-182 (438)
336 COG1125 OpuBA ABC-type proline 84.1 0.62 1.3E-05 52.2 2.2 25 149-173 28-52 (309)
337 PRK15453 phosphoribulokinase; 84.0 0.77 1.7E-05 53.0 3.0 26 148-173 5-30 (290)
338 PF05911 DUF869: Plant protein 84.0 66 0.0014 42.7 20.6 136 861-996 20-157 (769)
339 TIGR01360 aden_kin_iso1 adenyl 84.0 0.75 1.6E-05 49.9 2.9 23 150-172 5-27 (188)
340 PRK09825 idnK D-gluconate kina 83.9 0.82 1.8E-05 49.5 3.1 26 148-173 3-28 (176)
341 PRK14955 DNA polymerase III su 83.9 1.4 3E-05 54.2 5.5 56 117-174 8-64 (397)
342 PF15254 CCDC14: Coiled-coil d 83.8 1.1E+02 0.0025 39.7 21.5 43 945-987 501-543 (861)
343 PF07475 Hpr_kinase_C: HPr Ser 83.8 0.74 1.6E-05 49.0 2.6 23 148-170 18-40 (171)
344 PRK14732 coaE dephospho-CoA ki 83.8 0.85 1.9E-05 50.3 3.2 47 151-202 2-53 (196)
345 PRK13764 ATPase; Provisional 83.7 0.84 1.8E-05 58.4 3.5 27 148-174 257-283 (602)
346 PF10226 DUF2216: Uncharacteri 83.7 69 0.0015 34.6 16.8 25 915-939 53-77 (195)
347 PRK13342 recombination factor 83.6 1.1 2.5E-05 55.4 4.5 43 129-172 18-60 (413)
348 PHA00729 NTP-binding motif con 83.5 1.5 3.3E-05 49.1 5.0 28 146-173 15-42 (226)
349 PRK14527 adenylate kinase; Pro 83.3 0.89 1.9E-05 49.8 3.1 28 146-173 4-31 (191)
350 COG2884 FtsE Predicted ATPase 83.2 0.78 1.7E-05 49.4 2.4 25 147-171 27-51 (223)
351 PRK06761 hypothetical protein; 83.2 0.74 1.6E-05 53.5 2.5 26 149-174 4-29 (282)
352 TIGR02533 type_II_gspE general 83.1 1 2.2E-05 56.7 3.9 35 138-173 233-267 (486)
353 cd03115 SRP The signal recogni 83.0 1.1 2.3E-05 48.3 3.6 27 150-176 2-28 (173)
354 PRK05342 clpX ATP-dependent pr 83.0 1.8 4E-05 53.2 5.9 63 110-172 59-132 (412)
355 PRK14974 cell division protein 83.0 2 4.4E-05 51.3 6.1 31 146-176 138-168 (336)
356 TIGR02903 spore_lon_C ATP-depe 82.7 1.6 3.4E-05 56.8 5.4 36 140-175 167-202 (615)
357 PRK14957 DNA polymerase III su 82.7 1.6 3.5E-05 55.4 5.4 56 116-174 7-64 (546)
358 KOG1970 Checkpoint RAD17-RFC c 82.6 1.4 3E-05 54.3 4.5 60 113-172 70-134 (634)
359 PRK04220 2-phosphoglycerate ki 82.5 1.4 3.1E-05 51.5 4.4 27 146-172 90-116 (301)
360 PF13870 DUF4201: Domain of un 82.5 78 0.0017 34.3 19.6 35 959-993 98-132 (177)
361 KOG0249 LAR-interacting protei 82.3 73 0.0016 40.8 18.7 17 956-972 241-257 (916)
362 PRK08356 hypothetical protein; 82.3 0.81 1.8E-05 50.4 2.3 22 149-170 6-27 (195)
363 PLN02939 transferase, transfer 82.3 1E+02 0.0022 41.9 21.4 27 1374-1402 852-879 (977)
364 PRK05416 glmZ(sRNA)-inactivati 82.2 0.87 1.9E-05 53.3 2.6 21 148-168 6-26 (288)
365 PF03962 Mnd1: Mnd1 family; I 82.2 15 0.00033 40.2 12.0 78 919-997 71-152 (188)
366 COG0802 Predicted ATPase or ki 82.2 2.2 4.8E-05 44.4 5.2 29 146-174 23-51 (149)
367 cd02034 CooC The accessory pro 82.1 1.2 2.7E-05 44.7 3.3 26 151-176 2-27 (116)
368 TIGR01026 fliI_yscN ATPase Fli 82.1 2.5 5.5E-05 52.4 6.7 41 132-172 147-187 (440)
369 KOG0239 Kinesin (KAR3 subfamil 82.0 53 0.0012 43.0 18.7 14 1130-1143 488-501 (670)
370 PF09755 DUF2046: Uncharacteri 82.0 1.1E+02 0.0024 35.8 32.2 15 867-881 137-151 (310)
371 PRK05537 bifunctional sulfate 82.0 1.4 2.9E-05 56.7 4.5 44 129-174 375-418 (568)
372 TIGR00064 ftsY signal recognit 81.8 2.4 5.3E-05 49.2 6.1 47 130-176 45-100 (272)
373 PRK15422 septal ring assembly 81.8 29 0.00062 32.0 11.3 32 919-950 13-44 (79)
374 TIGR00176 mobB molybdopterin-g 81.8 1.2 2.5E-05 47.3 3.2 26 151-176 2-27 (155)
375 PF07728 AAA_5: AAA domain (dy 81.8 1 2.2E-05 46.4 2.7 22 151-172 2-23 (139)
376 COG1493 HprK Serine kinase of 81.6 1.1 2.3E-05 51.6 2.9 24 148-171 145-168 (308)
377 COG4619 ABC-type uncharacteriz 81.6 0.97 2.1E-05 47.6 2.3 25 147-171 28-52 (223)
378 PRK06893 DNA replication initi 81.6 2.1 4.6E-05 48.4 5.4 39 136-175 28-66 (229)
379 PRK07960 fliI flagellum-specif 81.5 3.5 7.5E-05 50.9 7.4 42 131-172 158-199 (455)
380 PF03193 DUF258: Protein of un 81.5 1.1 2.5E-05 47.5 2.9 25 147-171 34-58 (161)
381 COG4088 Predicted nucleotide k 81.5 1.5 3.3E-05 47.6 3.8 25 151-175 4-28 (261)
382 PRK08727 hypothetical protein; 81.4 2 4.3E-05 48.8 5.1 31 145-175 38-68 (233)
383 PF13555 AAA_29: P-loop contai 81.4 1.5 3.2E-05 38.8 3.1 20 150-169 25-44 (62)
384 TIGR03499 FlhF flagellar biosy 81.4 1.3 2.9E-05 51.8 3.7 45 131-175 169-221 (282)
385 PRK10646 ADP-binding protein; 81.4 2.2 4.8E-05 44.9 5.0 25 148-172 28-52 (153)
386 KOG1899 LAR transmembrane tyro 81.3 1.5E+02 0.0034 37.4 20.6 26 828-853 134-159 (861)
387 PF10168 Nup88: Nuclear pore c 81.3 1.5E+02 0.0032 39.5 22.6 11 447-457 300-310 (717)
388 KOG0976 Rho/Rac1-interacting s 81.2 1.8E+02 0.004 37.8 36.1 6 1319-1324 954-959 (1265)
389 PF00625 Guanylate_kin: Guanyl 81.2 1.1 2.3E-05 48.8 2.7 25 149-173 3-27 (183)
390 KOG2991 Splicing regulator [RN 81.1 1E+02 0.0022 34.7 24.9 80 917-996 217-301 (330)
391 KOG0963 Transcription factor/C 81.0 1.7E+02 0.0037 37.3 29.4 81 918-998 183-267 (629)
392 COG3074 Uncharacterized protei 81.0 34 0.00074 30.5 11.0 16 929-944 23-38 (79)
393 COG1382 GimC Prefoldin, chaper 81.0 55 0.0012 33.0 14.0 36 956-991 74-109 (119)
394 PRK14528 adenylate kinase; Pro 81.0 1.2 2.7E-05 48.6 3.1 24 149-172 2-25 (186)
395 KOG4677 Golgi integral membran 81.0 1.4E+02 0.0031 36.3 20.7 18 802-819 179-196 (554)
396 PRK14962 DNA polymerase III su 80.9 2.1 4.5E-05 53.8 5.4 53 117-173 6-61 (472)
397 PF06005 DUF904: Protein of un 80.9 22 0.00047 32.6 10.4 37 918-954 12-48 (72)
398 cd03293 ABC_NrtD_SsuB_transpor 80.9 1.1 2.3E-05 50.3 2.7 27 146-172 28-54 (220)
399 PRK08154 anaerobic benzoate ca 80.9 1.9 4.1E-05 51.2 4.9 48 125-172 106-157 (309)
400 PF04665 Pox_A32: Poxvirus A32 80.8 1.1 2.4E-05 50.7 2.7 25 150-174 15-39 (241)
401 PRK11308 dppF dipeptide transp 80.8 1.1 2.4E-05 53.6 2.9 27 146-172 39-65 (327)
402 PRK15093 antimicrobial peptide 80.8 1.1 2.4E-05 53.6 2.9 27 146-172 31-57 (330)
403 PRK06002 fliI flagellum-specif 80.7 2.1 4.6E-05 52.8 5.2 30 142-171 159-188 (450)
404 TIGR01005 eps_transp_fam exopo 80.6 2.2E+02 0.0048 38.3 27.8 22 965-986 375-396 (754)
405 PF00308 Bac_DnaA: Bacterial d 80.6 2.3 4.9E-05 47.9 5.1 41 135-175 19-61 (219)
406 TIGR00455 apsK adenylylsulfate 80.6 1.9 4E-05 46.9 4.4 29 146-174 16-44 (184)
407 PRK10416 signal recognition pa 80.5 1.5 3.3E-05 52.0 3.9 32 146-177 112-143 (318)
408 PRK14969 DNA polymerase III su 80.5 2 4.3E-05 54.8 5.1 56 116-174 7-64 (527)
409 PF10498 IFT57: Intra-flagella 80.5 49 0.0011 40.0 16.5 7 833-839 217-223 (359)
410 TIGR02673 FtsE cell division A 80.5 1.2 2.6E-05 49.7 2.8 27 146-172 26-52 (214)
411 PRK00698 tmk thymidylate kinas 80.5 1.6 3.4E-05 48.2 3.8 28 148-175 3-30 (205)
412 TIGR01359 UMP_CMP_kin_fam UMP- 80.5 1.2 2.5E-05 48.4 2.7 23 151-173 2-24 (183)
413 TIGR00960 3a0501s02 Type II (G 80.4 1.2 2.6E-05 49.8 2.8 27 146-172 27-53 (216)
414 PRK15177 Vi polysaccharide exp 80.4 1.2 2.6E-05 49.8 2.9 27 146-172 11-37 (213)
415 TIGR02868 CydC thiol reductant 80.4 0.72 1.6E-05 59.1 1.2 30 146-175 359-388 (529)
416 COG1123 ATPase components of v 80.3 1.1 2.5E-05 55.9 2.8 29 146-174 315-343 (539)
417 TIGR01166 cbiO cobalt transpor 80.3 1.2 2.7E-05 48.6 2.9 25 146-170 16-40 (190)
418 PRK10929 putative mechanosensi 80.2 1.5E+02 0.0032 41.2 22.5 180 814-995 53-244 (1109)
419 TIGR02881 spore_V_K stage V sp 80.2 1.4 2.9E-05 51.0 3.3 31 146-176 40-70 (261)
420 COG2274 SunT ABC-type bacterio 80.2 0.9 1.9E-05 59.5 2.0 31 146-176 497-527 (709)
421 PRK15079 oligopeptide ABC tran 80.2 1.2 2.6E-05 53.4 2.8 27 146-172 45-71 (331)
422 PF00005 ABC_tran: ABC transpo 80.1 1.1 2.5E-05 45.8 2.4 27 146-172 9-35 (137)
423 cd03116 MobB Molybdenum is an 80.1 1.6 3.5E-05 46.4 3.5 28 149-176 2-29 (159)
424 PRK14958 DNA polymerase III su 80.1 2.1 4.6E-05 54.2 5.2 55 116-174 7-64 (509)
425 KOG0288 WD40 repeat protein Ti 80.1 71 0.0015 38.4 16.8 9 1129-1137 246-254 (459)
426 TIGR03574 selen_PSTK L-seryl-t 80.0 1.2 2.7E-05 51.0 2.8 24 151-174 2-25 (249)
427 PRK08927 fliI flagellum-specif 80.0 3.1 6.8E-05 51.3 6.4 42 132-173 142-183 (442)
428 cd03225 ABC_cobalt_CbiO_domain 80.0 1.3 2.8E-05 49.3 2.9 27 146-172 25-51 (211)
429 TIGR02788 VirB11 P-type DNA tr 80.0 0.99 2.1E-05 53.5 2.1 27 147-173 143-169 (308)
430 PRK13768 GTPase; Provisional 80.0 1.4 3E-05 50.7 3.3 27 150-176 4-30 (253)
431 cd01124 KaiC KaiC is a circadi 80.0 1.3 2.9E-05 47.9 3.0 27 150-176 1-27 (187)
432 PRK09473 oppD oligopeptide tra 79.9 1.2 2.5E-05 53.5 2.7 27 146-172 40-66 (330)
433 PRK08116 hypothetical protein; 79.8 2.8 6.1E-05 48.6 5.7 47 129-175 94-141 (268)
434 cd03259 ABC_Carb_Solutes_like 79.8 1.3 2.8E-05 49.3 2.9 27 146-172 24-50 (213)
435 KOG2129 Uncharacterized conser 79.8 1.5E+02 0.0032 35.7 20.2 15 928-942 257-271 (552)
436 PRK05922 type III secretion sy 79.8 2.3 5.1E-05 52.3 5.2 41 132-172 141-181 (434)
437 KOG0056 Heavy metal exporter H 79.8 1.6 3.6E-05 52.7 3.7 41 147-187 563-603 (790)
438 PRK14963 DNA polymerase III su 79.7 1.9 4.1E-05 54.5 4.6 56 117-175 6-63 (504)
439 PLN02796 D-glycerate 3-kinase 79.7 1.2 2.7E-05 52.8 2.8 24 150-173 102-125 (347)
440 TIGR03007 pepcterm_ChnLen poly 79.6 1.9E+02 0.004 36.8 27.3 15 777-791 135-149 (498)
441 cd01983 Fer4_NifH The Fer4_Nif 79.6 1.7 3.6E-05 41.0 3.2 25 151-175 2-26 (99)
442 PTZ00121 MAEBL; Provisional 79.6 2.8E+02 0.0061 38.9 34.6 33 64-96 162-194 (2084)
443 PRK14950 DNA polymerase III su 79.6 2.3 5.1E-05 55.0 5.5 55 117-174 8-64 (585)
444 COG2805 PilT Tfp pilus assembl 79.6 1.4 3E-05 50.7 2.9 77 86-173 70-150 (353)
445 cd03260 ABC_PstB_phosphate_tra 79.5 1.4 3E-05 49.7 3.0 27 146-172 24-50 (227)
446 cd02026 PRK Phosphoribulokinas 79.5 1.3 2.7E-05 51.6 2.7 22 151-172 2-23 (273)
447 PRK04195 replication factor C 79.5 1.9 4E-05 54.6 4.4 26 147-172 38-63 (482)
448 PRK03839 putative kinase; Prov 79.5 1.4 2.9E-05 47.8 2.8 23 150-172 2-24 (180)
449 PRK14531 adenylate kinase; Pro 79.5 1.5 3.2E-05 47.8 3.1 25 149-173 3-27 (183)
450 PRK13341 recombination factor 79.3 2.1 4.5E-05 56.4 4.9 36 137-172 41-76 (725)
451 cd03255 ABC_MJ0796_Lo1CDE_FtsE 79.3 1.4 3E-05 49.3 2.9 27 146-172 28-54 (218)
452 TIGR02977 phageshock_pspA phag 79.2 1.2E+02 0.0025 34.2 19.7 75 916-990 98-183 (219)
453 PRK00023 cmk cytidylate kinase 79.2 1.4 3E-05 49.8 2.9 26 148-173 4-29 (225)
454 TIGR03608 L_ocin_972_ABC putat 79.2 1.4 3E-05 48.8 2.8 27 146-172 22-48 (206)
455 PRK11022 dppD dipeptide transp 79.1 1.3 2.9E-05 52.9 2.8 28 146-173 31-58 (326)
456 PRK06820 type III secretion sy 79.1 3.6 7.7E-05 50.8 6.5 39 134-172 149-187 (440)
457 cd03229 ABC_Class3 This class 79.0 1.5 3.2E-05 47.5 2.9 27 146-172 24-50 (178)
458 COG4942 Membrane-bound metallo 79.0 1.7E+02 0.0036 36.0 31.7 10 970-979 235-244 (420)
459 cd03296 ABC_CysA_sulfate_impor 79.0 1.4 3.1E-05 50.1 2.9 27 146-172 26-52 (239)
460 PF00158 Sigma54_activat: Sigm 78.9 1.4 3E-05 47.4 2.6 25 146-170 20-44 (168)
461 PRK09112 DNA polymerase III su 78.9 2.5 5.3E-05 51.0 5.0 40 135-174 31-71 (351)
462 PRK06305 DNA polymerase III su 78.8 2.9 6.2E-05 52.3 5.7 57 117-175 9-66 (451)
463 PRK14970 DNA polymerase III su 78.8 3.2 6.9E-05 50.5 6.1 57 116-174 8-65 (367)
464 smart00072 GuKc Guanylate kina 78.8 1.3 2.9E-05 48.2 2.5 23 150-172 4-26 (184)
465 PRK14959 DNA polymerase III su 78.8 2.3 5E-05 54.6 4.9 55 116-174 7-64 (624)
466 TIGR02640 gas_vesic_GvpN gas v 78.8 2.8 6E-05 48.5 5.2 42 128-172 4-45 (262)
467 cd03235 ABC_Metallic_Cations A 78.6 1.4 3E-05 49.1 2.6 26 146-171 23-48 (213)
468 PHA02530 pseT polynucleotide k 78.5 1.4 3E-05 52.0 2.7 24 149-172 3-26 (300)
469 PRK11176 lipid transporter ATP 78.5 1.3 2.7E-05 57.6 2.6 28 146-173 367-394 (582)
470 PRK05428 HPr kinase/phosphoryl 78.4 1.5 3.2E-05 51.4 2.8 24 148-171 146-169 (308)
471 PF13479 AAA_24: AAA domain 78.3 1.3 2.8E-05 49.5 2.3 23 146-168 1-23 (213)
472 PF11559 ADIP: Afadin- and alp 78.3 49 0.0011 34.8 14.0 57 922-978 64-120 (151)
473 PF11180 DUF2968: Protein of u 78.3 1.1E+02 0.0024 33.4 16.4 85 912-996 100-184 (192)
474 cd03292 ABC_FtsE_transporter F 78.2 1.5 3.3E-05 48.7 2.8 27 146-172 25-51 (214)
475 TIGR03185 DNA_S_dndD DNA sulfu 78.2 2.4E+02 0.0052 37.3 29.9 220 777-996 166-465 (650)
476 PF10212 TTKRSYEDQ: Predicted 78.1 2E+02 0.0042 36.3 24.5 77 917-993 434-514 (518)
477 PF14532 Sigma54_activ_2: Sigm 78.1 0.97 2.1E-05 46.8 1.1 25 146-170 19-43 (138)
478 TIGR02880 cbbX_cfxQ probable R 78.1 1.6 3.5E-05 51.1 3.1 28 150-177 60-87 (284)
479 KOG1937 Uncharacterized conser 78.1 1.7E+02 0.0038 35.7 24.1 15 607-621 75-89 (521)
480 PRK02496 adk adenylate kinase; 78.0 1.6 3.5E-05 47.4 2.9 22 151-172 4-25 (184)
481 cd03258 ABC_MetN_methionine_tr 78.0 1.1 2.3E-05 50.8 1.5 27 146-172 29-55 (233)
482 TIGR00678 holB DNA polymerase 78.0 2.8 6E-05 45.8 4.7 36 139-174 4-40 (188)
483 cd03223 ABCD_peroxisomal_ALDP 77.9 1.7 3.6E-05 46.6 2.9 27 146-172 25-51 (166)
484 PF09738 DUF2051: Double stran 77.9 43 0.00093 39.4 14.4 70 916-985 97-166 (302)
485 TIGR00152 dephospho-CoA kinase 77.9 2.3 5E-05 46.5 4.0 48 151-202 2-54 (188)
486 PF11932 DUF3450: Protein of u 77.9 56 0.0012 37.6 15.5 20 924-943 49-68 (251)
487 PF15619 Lebercilin: Ciliary p 77.9 1.2E+02 0.0025 33.6 27.4 27 926-952 120-146 (194)
488 KOG0922 DEAH-box RNA helicase 77.8 3.9 8.4E-05 51.7 6.3 120 125-255 48-179 (674)
489 PRK05439 pantothenate kinase; 77.7 3.5 7.6E-05 48.7 5.7 30 145-174 83-112 (311)
490 PRK06835 DNA replication prote 77.6 3.8 8.2E-05 49.0 6.0 29 147-175 182-210 (329)
491 PRK03731 aroL shikimate kinase 77.6 1.8 3.9E-05 46.4 3.0 25 149-173 3-27 (171)
492 PRK11124 artP arginine transpo 77.6 1.7 3.6E-05 49.6 2.9 26 146-171 26-51 (242)
493 TIGR03864 PQQ_ABC_ATP ABC tran 77.6 1.7 3.6E-05 49.4 2.9 24 146-169 25-48 (236)
494 cd03256 ABC_PhnC_transporter A 77.5 1.7 3.6E-05 49.5 2.9 24 146-169 25-48 (241)
495 PF01695 IstB_IS21: IstB-like 77.4 3.2 7E-05 45.0 4.9 49 128-176 27-75 (178)
496 cd03224 ABC_TM1139_LivF_branch 77.4 1.7 3.7E-05 48.7 2.9 24 146-169 24-47 (222)
497 TIGR02680 conserved hypothetic 77.4 3.6E+02 0.0078 38.9 36.3 227 763-995 732-978 (1353)
498 cd03297 ABC_ModC_molybdenum_tr 77.4 1.7 3.6E-05 48.6 2.8 23 146-169 22-44 (214)
499 COG1618 Predicted nucleotide k 77.3 2 4.4E-05 45.1 3.1 26 151-176 8-33 (179)
500 PRK14960 DNA polymerase III su 77.3 2.8 6E-05 53.9 4.9 54 117-172 7-61 (702)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=9.3e-222 Score=2048.87 Aligned_cols=1306 Identities=32% Similarity=0.482 Sum_probs=991.0
Q ss_pred CccCCcEEEEecCCCCEEEEEEEE-eeCCCEEEE--EecCCcEEEEcCcccccccCCCCCCCCCcCccccCCCCCchhHH
Q 000489 2 NLRKGSKVWVEDKDLAWVAAEVVS-DSVGRHVQV--LTATGKKVLAAPERVFLRATDDDEEHGGVDDMTKLTYLNEPGVL 78 (1463)
Q Consensus 2 ~~~~g~~vw~~~~~~~~~~~~v~~-~~~~~~~~v--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~l~e~~vl 78 (1463)
++.+|..||+|+.+.+|+.|.|.. +..++.++. ...+|..+.++...+ ...+...+..+++||||.|+|||||+||
T Consensus 5 ~~~~g~~~w~p~~e~~Wi~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~P~~~~vdDLt~LSyLNEpsVl 83 (1463)
T COG5022 5 NAEVGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDGESVSVKKKVL-GNDRIKLPKFDGVDDLTELSYLNEPAVL 83 (1463)
T ss_pred ccccCceeeeeccccceeeeeechhhhhccccccchhhccCcccceeehhc-ccccccCccccCchhhhhhhccCcHHHH
Confidence 378999999999999999999942 223444432 234555555554433 1101111246899999999999999999
Q ss_pred HHHHHHhhcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHHHHHhcCCCeEEEEcCCCC
Q 000489 79 YNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRAMISEHQSQSILVSGESG 158 (1463)
Q Consensus 79 ~~L~~R~~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~~~~~~~l~PHi~avA~~Ay~~m~~~~~~QsIiisGeSG 158 (1463)
|||++||.+++||||+|.||||||||+.|| ||+.++++.|.+++..+++|||||||++||+.|...++|||||||||||
T Consensus 84 ~nL~kRY~n~~IYTYSGlvLIAvNPy~~L~-iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISGESG 162 (1463)
T COG5022 84 HNLEKRYNNGQIYTYSGLVLIAVNPYRDLG-IYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESG 162 (1463)
T ss_pred HHHHHHhhcCceeEEeeeEEEEecCcccCC-CccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEecCCC
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhhcccCCCCCcHHHHHHhhccHHHhhccccccCCCCCCcccceEEEEEcCCCcccceeeeeecc
Q 000489 159 AGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDTNGRISGAAIRTYLL 238 (1463)
Q Consensus 159 aGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpilEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLL 238 (1463)
|||||+||+||+|||++++.++...++||++||++||||||||||||+||||||||||||+|.||.+|.|+||+|+||||
T Consensus 163 AGKTe~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~YLL 242 (1463)
T COG5022 163 AGKTENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETYLL 242 (1463)
T ss_pred CCchHHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhhhhh
Confidence 99999999999999999887765667899999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCccceehhhcccCh-HH-HhhccCCCCCCcccccCCCccccCCCCcHHHHHHHHHHHHHcCCCHHHHHH
Q 000489 239 ERSRVVQITDPERNYHCFYQLCASG-RD-AEKYKLDHPSHFHYLNQSKVYELDGVSSAEEYMKTKRAMDIVGISHEDQEA 316 (1463)
Q Consensus 239 EksRvv~~~~~ErnfHiFYql~~~~-~~-~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f~~~~~al~~lg~~~~~~~~ 316 (1463)
||||||+|+.+|||||||||||+|. +. ++.+++..|++|+||++|+|..++||||+++|..|+.||+++||+.++|.+
T Consensus 243 EKSRVV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq~~ 322 (1463)
T COG5022 243 EKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQ 322 (1463)
T ss_pred hhhhhccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHHHHH
Confidence 9999999999999999999999997 44 445666899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCeeeecCCCCCcccccCcccHHHHHHHHHhcCCCHHHHHHHHhhceecccCceEEecCCHHHHHHHHH
Q 000489 317 IFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQTREGSIIKALDCNAAVASRD 396 (1463)
Q Consensus 317 i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~rd 396 (1463)
||++||||||||||+|..+.+ +++...+.. .++.+|.|||||+..|.+||++|.|.+++|.|.+|++..||..+||
T Consensus 323 IF~iLAaILhiGNIef~~~r~-g~a~~~~~~---~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~ird 398 (1463)
T COG5022 323 IFKILAAILHIGNIEFKEDRN-GAAIFSDNS---VLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRD 398 (1463)
T ss_pred HHHHHHHHHhhcceeeeeccc-chhhcCCch---HHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHH
Confidence 999999999999999988654 444444443 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCcceeeeecccCCccCCCCchhHHHhhhhhhHHhhhhhHHHHHHhHHHHhhcC
Q 000489 397 ALAKTVYSRLFDWLVEKINRSVGQDMNSQMQIGVLDIYGFESFKHNSFEQFCINFANEKLQQHFNEHVFKMEQEEYRREE 476 (1463)
Q Consensus 397 ~lak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNE~Lq~~f~~~vf~~eq~~y~~E~ 476 (1463)
||||+||++||+|||++||.+|..++...+|||||||||||+|+.|||||||||||||||||+||+|||++|||||.+||
T Consensus 399 slAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~ 478 (1463)
T COG5022 399 SLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEG 478 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999877778999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccChHHHHHHhhh-ccCccccccccccchhhhhhcccCCCCchhhHHHhhhhcc-------------------
Q 000489 477 INWSYIEFIDNQDVLDLIEK-VTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPVLS------------------- 536 (1463)
Q Consensus 477 i~~~~i~~~dn~~~l~lie~-~~~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~~~~~------------------- 536 (1463)
|+|++|+|.|||+||||||+ .|.|||++|| |||.+|.|||++|.+||++.+.
T Consensus 479 IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLD--------EE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~Fvv 550 (1463)
T COG5022 479 IEWSFIDYFDNQPCIDLIEKKNPLGILSLLD--------EECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVV 550 (1463)
T ss_pred CcccccccccCcchhHHHhccCCCchHhhhc--------HHhcCCCCCchHHHHHHHHHhccccCccccccccCCCceEE
Confidence 99999999999999999997 3799999999 9999999999999999987521
Q ss_pred ---------------------------------------------ccccCCCCccccHHHHHHHHHHHHHHHHcccCCee
Q 000489 537 ---------------------------------------------EESSRSSYKFSSVASRFKQQLQALMETLNSTEPHY 571 (1463)
Q Consensus 537 ---------------------------------------------~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~ 571 (1463)
++..+.+ +++|+|+.||.||.+||++|++|+|||
T Consensus 551 kHYAgDVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~~~K~-~~pT~gs~~K~sl~~Lm~tl~sTqphy 629 (1463)
T COG5022 551 KHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEENIESKG-RFPTLGSRFKESLNSLMSTLNSTQPHY 629 (1463)
T ss_pred EeecccceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhhhccccC-CCCcHHHHHHHHHHHHHHHHHhcCCce
Confidence 0111223 789999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCCccchhhHHHHHhhhhhhhccc-----chHHHHHHHHHH
Q 000489 572 IRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLLALEFMDE-----SYEEKALTEKIL 646 (1463)
Q Consensus 572 irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~-----~~~~~~~~~~il 646 (1463)
|||||||..|+|+.||+.+|++|||||||+|+|||+|+|||+||+|+||+.||++|.|..... ..|.+.+|+.||
T Consensus 630 IRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL 709 (1463)
T COG5022 630 IRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSIL 709 (1463)
T ss_pred eEeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999864422 136799999999
Q ss_pred HHcccC--ccccccceeeecccccccccchhhhhhhhHHHHHHHHHhcchhhhhHHhhhhhHHHHHHHhhcccccccccc
Q 000489 647 RKLKLE--NFQLGRTKVFLRAGQIGILDSRRAEVLDSAARCIQHRWRTFIAHRNFVSIRAAAFVLQAQCRGCLARKLYGV 724 (1463)
Q Consensus 647 ~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r~~~~~~aa~~IQ~~~R~~~~Rk~~~~~r~a~i~iQ~~~Rg~laRk~~~~ 724 (1463)
..+.++ .||+|+||||||+|+++.||.+|...++.+++.||++|||++.|++|.+..+.+..+|...+|++.|++...
T Consensus 710 ~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~ 789 (1463)
T COG5022 710 EELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDY 789 (1463)
T ss_pred HhhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhccc
Confidence 998776 599999999999999999999999999999999999999999999999999999999999999999987776
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 000489 725 KRETAAAISLQKYVRRWLSRHAFLKLSLAAIVIQ-SNIRGFSIRERFLHRKRHKAATVIQACWRMCKFRSAFQHHQTSII 803 (1463)
Q Consensus 725 ~r~~~aai~IQ~~~R~~~~Rk~y~~~r~aai~iQ-s~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~y~~~~~a~v 803 (1463)
--...+++.+|..||....|+.|......++.+| ..+|....+.........++++.+|+.||.+..+++|..+.+..+
T Consensus 790 ~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i 869 (1463)
T COG5022 790 ELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETI 869 (1463)
T ss_pred chHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHH
Confidence 6666799999999999999999999999999999 677777777666677778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000489 804 AIQCRWRQKLAKRELRRLKQVANEAGALRLAKNKLERQLEDLTWRVQLEKKLRVSTEEAKSVEISKLQKLLESLNLELDA 883 (1463)
Q Consensus 804 ~iQ~~~R~~~arr~~~~lk~~a~~~~~l~~~~~~Le~ki~el~~rl~~ek~l~~~~~eak~~E~~~Lq~~le~l~~eL~~ 883 (1463)
.+|+.+|...|++++..++.+.+++..+......++.++.++...+......... -+......|++.++....+...
T Consensus 870 ~~~~~~r~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~~s~~~~~~~---~k~e~~a~lk~~l~~~d~~~~~ 946 (1463)
T COG5022 870 YLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLE---FKTELIARLKKLLNNIDLEEGP 946 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhccchhhhhhhH---HHHHHHHHHHHHhhcccccchh
Confidence 9999999999999999999999999999999999999888876655531111100 1111122222222220000000
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHH---HHHHHHHHH
Q 000489 884 AKLATINECNKNAMLQNQLELSLKEKSALERELVAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQ---KENNNTIEK 960 (1463)
Q Consensus 884 ~~~~~~~e~~~~~~~~~ele~~~~e~~~l~e~~~~~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~---~~~~~l~~e 960 (1463)
... .. ...++.++..+..+|+....+....+...+....+.. .+.....++
T Consensus 947 ~~~-----~~---------------------~~~~~~~l~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~el~~~~~~ 1000 (1463)
T COG5022 947 SIE-----YV---------------------KLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKE 1000 (1463)
T ss_pred HHH-----HH---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHH
Confidence 000 00 0002222222233232222222211111111111111 111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhhhccCCCCcCCCCccccccccCCCCCCCCCCCCC---CCCCC
Q 000489 961 LREVEQKCSSLQQNMQSLEEK---LSHLEDENHVLRQKALSVSPKSNRFGLPKAFSDKYTGSLSLPHVDRKP---IFESP 1034 (1463)
Q Consensus 961 l~~~e~~i~~L~~e~~~Lee~---l~~Le~E~~~Lkqq~~~~s~~~~~~~~~~~~~e~l~~~~~~~~~e~~~---~~e~~ 1034 (1463)
+.+...++..++.....+++. +..+....+..... ...++...+...+.... ..+..
T Consensus 1001 l~~~~~~~~~l~~~~~~lk~~~~~~~~l~~~~~~~~s~-----------------~~~~~~~~~~~~~~~~~~~~~~~l~ 1063 (1463)
T COG5022 1001 LAELSKQYGALQESTKQLKELPVEVAELQSASKIISSE-----------------STELSILKPLQKLKGLLLLENNQLQ 1063 (1463)
T ss_pred HHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccc-----------------hhhhhccCcccchhhhhhHHHHHhh
Confidence 221111112222222222211 22222222111100 00000000000000000 00000
Q ss_pred CCCCCCCCCCcCCchhhhhhhhHHHhhhhHHHHHHHHhh-hcCCCC-CCcchHHH-HHHHHhcccc-cccchhHHHHHHH
Q 000489 1035 TPSKLITPFSHGLSESRRTKLTAERYQENLEFLSRCIKE-NLGFNN-GKPVAACI-IYKSLVHWQA-FESERTAIFDYII 1110 (1463)
Q Consensus 1035 ~~~~~~~~~~~~~~e~e~~~~l~E~q~E~~d~l~~~i~~-~~~~~~-~kp~~A~i-lf~cl~~~~~-~~~~~~~ll~~ii 1110 (1463)
.+. ..+.++.. ....-....++.+..+.+++.+.. ++...+ .-+.||.. -+.....|+. ...+...++...+
T Consensus 1064 ~~~-~~l~~~r~---~~~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~ 1139 (1463)
T COG5022 1064 ARY-KALKLRRE---NSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLV 1139 (1463)
T ss_pred hhH-hhhhhcCc---ccchhHHHHHHHHhhhhhhhhhccchhhhhcccccchhhHHHHHHHHhhccchHHhhhhHHHHHH
Confidence 000 00000000 000001112334455555554432 222221 11224444 3333345654 2222334555556
Q ss_pred HHHHHhhccC---CCCCccchhhhhHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCCCCcccc
Q 000489 1111 EGINDVLKVG---DENSILPYWLSNASALLCLLQRSLRSNGLLTANTPRTTGSTGLPGRIAYGIKSPFKYIGFGDGIPHV 1187 (1463)
Q Consensus 1111 ~~I~~~i~~~---~d~~~layWLSN~~~Ll~~lqq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v 1187 (1463)
..++.+.... +-.....||.+|...+++.---. ...+... +......+++. +..+
T Consensus 1140 ~~le~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------~~~~~~~-------~~~~~~d~~~~----~s~s----- 1197 (1463)
T COG5022 1140 NTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFA------ALSEKRL-------YQSALYDEKSK----LSSS----- 1197 (1463)
T ss_pred hhccchhccccchhccccccccccccccCCCCCchh------hcchhhh-------hHhhhhccccc----ccHH-----
Confidence 5665554433 22344789999999876310000 0000000 00000001110 0001
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCccccccCCCcCCCCCCCCCcccccHHHHHHHHHHHHH
Q 000489 1188 EARYPAILFKQQLTACVEKIFGLIRDNLKKELSPLLGSCIQVPKTARVHAGKLSRSPGVQQQSHTSQWDNIIKFLDSLMR 1267 (1463)
Q Consensus 1188 ~~~~p~~~~~qqL~~~~~~iy~~l~~~~~~~l~~~L~~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~~~~~ 1267 (1463)
-.-..+..+.++..++|..|.... .+.+++...+.....+...+|+.. ....+..+...+...++.+++.+.+
T Consensus 1198 ----~v~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~n~i~~ 1270 (1463)
T COG5022 1198 ----EVNDLKNELIALFSKIFSGWPRGD--KLKKLISEGWVPTEYSTSLKGFNN-LNKKFDTPASMSNEKLLSLLNSIDN 1270 (1463)
T ss_pred ----HHHHHHHHHHHHHHhccccchhhh--hhhhhhhhccchhhhccccccccc-hhhcccCcccCcHHHHHHHHHHHHH
Confidence 123467788888888888887665 333443222222222222333321 1112223445677899999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhHhHHHHHhhhccCCcccccchhhhhhchHHHHHHHhhcCcccccccHHhhHHHHHHHH
Q 000489 1268 RLRENHVPSFFIRKLITQVFSFINISLFNSLLLRRECCTFSNGEYVKSGLAELEKWIVSAKEEFAGTSWHELNYIRQAVG 1347 (1463)
Q Consensus 1268 ~L~~~~V~~~l~~Q~f~QlF~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~l~~~~~~~~~L~~l~Qa~~ 1347 (1463)
.++.+.+.+.+....++++.-++|+.+||.|..|..-..|+.|.++.+|.+.+.+||+.+|. ..+..+|++++||+.
T Consensus 1271 ~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~~~~~n~~~~~~w~~~~~i---~~~~~~l~~l~q~~k 1347 (1463)
T COG5022 1271 LLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEELDDWCREFEI---SDVDEELEELIQAVK 1347 (1463)
T ss_pred HHHHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhcccccccchhhhHHHHhhcc---cchHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999986 456689999999999
Q ss_pred HHhhcccCccCHHHHHHccCCCCCHHHHHHHHhcCccCCCCCccCCHHHHHHHHHHhhh
Q 000489 1348 FLVIHQKRKKSLDEIRQDLCPALTVRQIYRICTMYWDDKYGTQSVSNEVVAQMREILNK 1406 (1463)
Q Consensus 1348 lLq~~kk~~~~~~~i~~~~c~~Ls~~Ql~kIL~~Y~~d~~e~~~v~~~~i~~v~~~~~~ 1406 (1463)
.+++.++...+++++ .+.|.+|+|.|+.+|+.+|.|.++++ ++|.++.++|......
T Consensus 1348 ~~~~~~~dl~~~~~~-~~~~~~l~~~~~~~L~~~y~~~~~e~-~l~ke~~~~~~a~~~~ 1404 (1463)
T COG5022 1348 VLQLLKDDLNKLDEL-LDACYSLNPAEIQNLKSRYDPADKEN-NLPKEILKKIEALLIK 1404 (1463)
T ss_pred hhhhhhCCHHHHHHH-HHHHHhcCHHHHHHHHHhhhhhcccC-CChHHHHHHHhhhhhH
Confidence 999998888888888 59999999999999999999998985 9999999777555543
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=4.7e-186 Score=1750.65 Aligned_cols=705 Identities=33% Similarity=0.538 Sum_probs=648.2
Q ss_pred CccCCcEEEE-------ecCCCCEEEEEEEEeeCCCEEEEEe---cCCcEEEEcCcccccccCCCCCCCCCcCccccCCC
Q 000489 2 NLRKGSKVWV-------EDKDLAWVAAEVVSDSVGRHVQVLT---ATGKKVLAAPERVFLRATDDDEEHGGVDDMTKLTY 71 (1463)
Q Consensus 2 ~~~~g~~vw~-------~~~~~~~~~~~v~~~~~~~~~~v~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~ 71 (1463)
++.+|+.||+ +||+++|+.|+|+.+.+|+.++|.. ++|++++++.+++ ++ .|++.++++++||+.|+|
T Consensus 29 ~~~~g~~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~-~n~~~~~~~~~Dl~~L~~ 106 (821)
T PTZ00014 29 NVLKGFYVWTDKAPAVKEDPDLMFAKCLVLPGSTGEKLTLKQIDPPTNSTFEVKPEHA-FN-ANSQIDPMTYGDIGLLPH 106 (821)
T ss_pred ccccCCeEEeeCCCCCCCCchhheeeEEEEEecCCCEEEEEEecCCCCcEEEeeHHHh-hh-cCCCCCcCCcchhhhCCC
Confidence 3568999998 6789999999993377899998874 4689999999999 77 566556789999999999
Q ss_pred CCchhHHHHHHHHhhcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhhCC-CCCCCChhHHHHHHHHHHHHHhcCCCeE
Q 000489 72 LNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGA-PFGELSPHVFAVADASYRAMISEHQSQS 150 (1463)
Q Consensus 72 l~e~~vl~~L~~R~~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~~~-~~~~l~PHi~avA~~Ay~~m~~~~~~Qs 150 (1463)
||||+|||||+.||..+.||||+|++|||||||+.+| +|++++++.|++. ..+++||||||||+.||+.|...++|||
T Consensus 107 lnE~~vL~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~Qs 185 (821)
T PTZ00014 107 TNIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLG-NTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQT 185 (821)
T ss_pred CCHHHHHHHHHHHHcCCCCeeeECCEEEEECCCCCCC-CCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCce
Confidence 9999999999999999999999999999999999998 9999999999985 5789999999999999999999999999
Q ss_pred EEEcCCCCCCchHHHHHHHHHHHHhhcccCCCCCcHHHHHHhhccHHHhhccccccCCCCCCcccceEEEEEcCCCcccc
Q 000489 151 ILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDTNGRISG 230 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpilEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~g 230 (1463)
|||||||||||||+||++|+|||.+++.. ...+|+++|+++||||||||||||+|||||||||||++|+||.+|.|+|
T Consensus 186 IiiSGESGAGKTe~tK~im~yla~~~~~~--~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~G 263 (821)
T PTZ00014 186 IIVSGESGAGKTEATKQIMRYFASSKSGN--MDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRY 263 (821)
T ss_pred EEEEcCCCCCchHHHHHHHHHHHHhccCC--CcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEee
Confidence 99999999999999999999999986532 2357999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccccccccccCCCccceehhhcccCh--HHHhhccCCCCCCcccccCCCccccCCCCcHHHHHHHHHHHHHcC
Q 000489 231 AAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEEYMKTKRAMDIVG 308 (1463)
Q Consensus 231 a~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f~~~~~al~~lg 308 (1463)
|+|.+|||||||||+|++||||||||||||+|+ +++++|+|.++.+|+||++ +|+.++|+||+++|.+|+.||+.||
T Consensus 264 a~I~~YLLEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~-~~~~~~~~dD~~~f~~~~~A~~~lg 342 (821)
T PTZ00014 264 GSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINP-KCLDVPGIDDVKDFEEVMESFDSMG 342 (821)
T ss_pred EEEEEEeccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCC-CCccCCCCchHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999997 7788999999999999994 6899999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCeeeecCCC---CCcccccCcccHHHHHHHHHhcCCCHHHHHHHHhhceecccCceEEec
Q 000489 309 ISHEDQEAIFRTLAAILHLGNIEFSPGKE---HDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQTREGSIIKA 385 (1463)
Q Consensus 309 ~~~~~~~~i~~ilaaiLhlGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~lLgv~~~~l~~~l~~r~~~~~~e~~~~~ 385 (1463)
|+++++.+||+|||||||||||+|.+... .+++.+.+. +..+++.||+|||||+++|.++||+|++.++++.++++
T Consensus 343 ~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~-~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~ 421 (821)
T PTZ00014 343 LSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDE-SLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGP 421 (821)
T ss_pred CCHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccCC-CHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecC
Confidence 99999999999999999999999986432 244555443 23479999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcceeeeecccCCccCCCCchhHHHhhhhhhHHhhhhhHHHH
Q 000489 386 LDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMNSQMQIGVLDIYGFESFKHNSFEQFCINFANEKLQQHFNEHVF 465 (1463)
Q Consensus 386 l~~~~a~~~rd~lak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNE~Lq~~f~~~vf 465 (1463)
+++++|..+||||||+||++||+|||.+||.+|..+.....+||||||||||+|+.|||||||||||||||||+||+|||
T Consensus 422 ~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF 501 (821)
T PTZ00014 422 WSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVF 501 (821)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987766778999999999999999999999999999999999999999
Q ss_pred HHhHHHHhhcCCCcccccccChHHHHHHhhhccCccccccccccchhhhhhcccCCCCchhhHHHhhhhcc---------
Q 000489 466 KMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPVLS--------- 536 (1463)
Q Consensus 466 ~~eq~~y~~E~i~~~~i~~~dn~~~l~lie~~~~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~~~~~--------- 536 (1463)
+.||+||.+|||+|++|+|.||++|||||++||.|||++|| |||++|++||++|++||+++++
T Consensus 502 ~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLD--------Eec~~p~~tD~~f~~kl~~~~~~~~~f~~~~ 573 (821)
T PTZ00014 502 ERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILE--------DQCLAPGGTDEKFVSSCNTNLKNNPKYKPAK 573 (821)
T ss_pred HHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHH--------HHhCCCCCCHHHHHHHHHHHhcCCCCccCCC
Confidence 99999999999999999999999999999999999999999 9999999999999999987532
Q ss_pred ---------------------------------------------------cc--ccC-CCCccccHHHHHHHHHHHHHH
Q 000489 537 ---------------------------------------------------EE--SSR-SSYKFSSVASRFKQQLQALME 562 (1463)
Q Consensus 537 ---------------------------------------------------~~--~~~-~~~~~~tv~~~f~~~l~~L~~ 562 (1463)
.+ ... +..+.+||+++|+.||+.||+
T Consensus 574 ~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~s~Fk~qL~~Lm~ 653 (821)
T PTZ00014 574 VDSNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKGKLAKGQLIGSQFLNQLDSLMS 653 (821)
T ss_pred CCCCCceEEEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhcccccccccccCCCcHHHHHHHHHHHHHH
Confidence 00 000 111457999999999999999
Q ss_pred HHcccCCeeEEEecCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCCccchhhHHHHHhhhhhhhccc-chHHHHH
Q 000489 563 TLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLLALEFMDE-SYEEKAL 641 (1463)
Q Consensus 563 ~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~-~~~~~~~ 641 (1463)
+|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|.+..... ..|+++.
T Consensus 654 ~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~ 733 (821)
T PTZ00014 654 LINSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEK 733 (821)
T ss_pred HHhccCCeEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998765432 3488999
Q ss_pred HHHHHHHccc--Cccccccceeeecccccccccchhhhhhh---hHHHHHHHHHhcchhhhhHHhhhhhHHHHHHHhhcc
Q 000489 642 TEKILRKLKL--ENFQLGRTKVFLRAGQIGILDSRRAEVLD---SAARCIQHRWRTFIAHRNFVSIRAAAFVLQAQCRGC 716 (1463)
Q Consensus 642 ~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r~~~~~---~aa~~IQ~~~R~~~~Rk~~~~~r~a~i~iQ~~~Rg~ 716 (1463)
|+.||+.+++ ++|++|+||||||+++++.||..|.+++. .+++.||++||||++|++|.+++.+++.||+++|||
T Consensus 734 ~~~il~~~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~ 813 (821)
T PTZ00014 734 AEKLLERSGLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRH 813 (821)
T ss_pred HHHHHHHcCCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999876 48999999999999999999998877764 688999999999999999999999999999999998
Q ss_pred ccccc
Q 000489 717 LARKL 721 (1463)
Q Consensus 717 laRk~ 721 (1463)
++++.
T Consensus 814 l~~~~ 818 (821)
T PTZ00014 814 LVIAE 818 (821)
T ss_pred HHHhc
Confidence 88754
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.8e-169 Score=1655.97 Aligned_cols=713 Identities=41% Similarity=0.705 Sum_probs=647.9
Q ss_pred ccCCcEEEEecCCCCEEEEEEEEeeCCCEEEEEecCCcEEE-EcCcccccccCCCCCCCCCcCccccCCCCCchhHHHHH
Q 000489 3 LRKGSKVWVEDKDLAWVAAEVVSDSVGRHVQVLTATGKKVL-AAPERVFLRATDDDEEHGGVDDMTKLTYLNEPGVLYNL 81 (1463)
Q Consensus 3 ~~~g~~vw~~~~~~~~~~~~v~~~~~~~~~~v~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L 81 (1463)
+..-.+|||||++++|+.|.| ....|+.|+|.+.+|...+ ++.+++ +| .|| +..+.++||+.|+|||||+|||||
T Consensus 27 ~d~kk~vWvpd~~e~fv~~~i-~~~~~~~v~v~~~~~~~~~~v~~~~v-~~-~NP-Pkfdk~eDMa~LT~lNeasVL~nL 102 (1930)
T KOG0161|consen 27 FDSKKWVWVPDPKEGFVKAEI-KSEEGEKVTVETEEGGTLTQVKEDDV-QK-MNP-PKFDKVEDMAELTFLNEASVLHNL 102 (1930)
T ss_pred hhhcceeeecCCCCCeeeeee-eccCCCceEEEEcCCceeEEecHHHc-Cc-CCC-CCccccccHHHhcccChHHHHhhH
Confidence 344579999999999999999 6665566999998887776 888888 77 554 346799999999999999999999
Q ss_pred HHHhhcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCCc
Q 000489 82 ERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRAMISEHQSQSILVSGESGAGK 161 (1463)
Q Consensus 82 ~~R~~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~~~~~~~l~PHi~avA~~Ay~~m~~~~~~QsIiisGeSGaGK 161 (1463)
+.||.++.||||+|..||+||||+++| ||+++++++|+|+.+.+|||||||||+.||+.|+.++.||||+|+|||||||
T Consensus 103 ~~RY~~~lIyTYSGLFcVviNPyk~lp-iYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLiTGESGAGK 181 (1930)
T KOG0161|consen 103 KQRYASDLIYTYSGLFCVVINPYKRLP-IYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILITGESGAGK 181 (1930)
T ss_pred HHHHHhChHHHcccceeEEecCCcCCC-CCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEeeecCCCCCc
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcccCC---CCCcHHHHHHhhccHHHhhccccccCCCCCCcccceEEEEEcCCCcccceeeeeecc
Q 000489 162 TETTKLIMQYLTFVGGRAAG---DDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDTNGRISGAAIRTYLL 238 (1463)
Q Consensus 162 Te~~k~~~~yla~~~~~~~~---~~~~ve~~il~snpilEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLL 238 (1463)
||+||.|++|||++++++.. ...+++++|+++||||||||||+|++|+|||||||||+|+||..|.|+||.|.+|||
T Consensus 182 TeNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLL 261 (1930)
T KOG0161|consen 182 TENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLL 261 (1930)
T ss_pred chhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHH
Confidence 99999999999999875421 125899999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCccceehhhcccCh--HHHhhccCCC-CCCcccccCCCccccCCCCcHHHHHHHHHHHHHcCCCHHHHH
Q 000489 239 ERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDH-PSHFHYLNQSKVYELDGVSSAEEYMKTKRAMDIVGISHEDQE 315 (1463)
Q Consensus 239 EksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~-~~~~~yl~~~~~~~~~~~~d~~~f~~~~~al~~lg~~~~~~~ 315 (1463)
|||||++|+++|||||||||+++|. ..+..|.|.+ +.+|.|+.++.. .++|+||+++|..|..||+++||+++++.
T Consensus 262 EKsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef~~t~~a~~ilgfs~~E~~ 340 (1930)
T KOG0161|consen 262 EKSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEFQETDEAMDILGFSEEEKI 340 (1930)
T ss_pred HHhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999999999986 6777888875 899999998887 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCeeeecCCCCCcccccCcccHHHHHHHHHhcCCCHHHHHHHHhhceecccCceEEecCCHHHHHHHH
Q 000489 316 AIFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQTREGSIIKALDCNAAVASR 395 (1463)
Q Consensus 316 ~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~l~~~l~~r~~~~~~e~~~~~l~~~~a~~~r 395 (1463)
+||+|+||||||||+.|......+.+.+.+.. ..+.+|.||||+.+.|.+++++..+.++++.+.+..+.+|+..+.
T Consensus 341 ~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~---~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v 417 (1930)
T KOG0161|consen 341 SIFRIVSAILHLGNIKFKQEPREEQAEFDNTE---VADKACHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAV 417 (1930)
T ss_pred HHHHHHHHHHHhcchhhhccccccccCCCCch---HHHHHHHHcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHH
Confidence 99999999999999999986545555555443 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCCcceeeeecccCCccCCCCchhHHHhhhhhhHHhhhhhHHHHHHhHHHHhhc
Q 000489 396 DALAKTVYSRLFDWLVEKINRSVGQDMNSQMQIGVLDIYGFESFKHNSFEQFCINFANEKLQQHFNEHVFKMEQEEYRRE 475 (1463)
Q Consensus 396 d~lak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNE~Lq~~f~~~vf~~eq~~y~~E 475 (1463)
.+|||++|+|+|.|+|.+||.+|.......+|||||||+|||+|+.||||||||||+||||||+||+|+|.+||++|.+|
T Consensus 418 ~alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~E 497 (1930)
T KOG0161|consen 418 EALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQRE 497 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHh
Confidence 99999999999999999999999887778899999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccc-cChHHHHHHhhhccCccccccccccchhhhhhcccCCCCchhhHHHhhhhcc------------------
Q 000489 476 EINWSYIEF-IDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPVLS------------------ 536 (1463)
Q Consensus 476 ~i~~~~i~~-~dn~~~l~lie~~~~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~~~~~------------------ 536 (1463)
||.|++||| .|-||||||||+ |+||+++|| |||.||++||.+|+.||++.|.
T Consensus 498 gIew~fidfG~Dlq~~idLIEk-p~Gi~slLd--------EEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F 568 (1930)
T KOG0161|consen 498 GIEWDFIDFGLDLQPTIDLIEK-PMGILSLLD--------EECVVPKATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHF 568 (1930)
T ss_pred CCceeeeccccchhhhHHHHhc-hhhHHHHHH--------HHHhcCCCccchHHHHHHHHhhccCccccCcccccchhhh
Confidence 999999999 899999999997 589999999 9999999999999999987631
Q ss_pred --------------------------------------------cc---------------ccCCCCccccHHHHHHHHH
Q 000489 537 --------------------------------------------EE---------------SSRSSYKFSSVASRFKQQL 557 (1463)
Q Consensus 537 --------------------------------------------~~---------------~~~~~~~~~tv~~~f~~~l 557 (1463)
.+ .++++ .|.||+..++.||
T Consensus 569 ~l~HyaG~V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~~~~~~~~~~~~K~g-~F~Tvs~~~keql 647 (1930)
T KOG0161|consen 569 ALVHYAGTVDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAAAAKGGEALKKTKKG-SFRTVSQLYKEQL 647 (1930)
T ss_pred heeeecceeccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccchhhhhhhhhcccCCc-chhhHHHHHHHHH
Confidence 00 11222 5679999999999
Q ss_pred HHHHHHHcccCCeeEEEecCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCCccchhhHHHHHhhhhhhhccc-ch
Q 000489 558 QALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLLALEFMDE-SY 636 (1463)
Q Consensus 558 ~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~-~~ 636 (1463)
+.||.+|++|+|||||||.||+.|.|+.+|.+.|+.||||.||||+|||+|.|||.|++|.+|..||.++.+....+ ..
T Consensus 648 ~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~ 727 (1930)
T KOG0161|consen 648 NKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFS 727 (1930)
T ss_pred HHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999555554433 35
Q ss_pred HHHHHHHHHHHHcccC--ccccccceeeecccccccccchhhhhhhhHHHHHHHHHhcchhhhhHHhhh---hhHHHHHH
Q 000489 637 EEKALTEKILRKLKLE--NFQLGRTKVFLRAGQIGILDSRRAEVLDSAARCIQHRWRTFIAHRNFVSIR---AAAFVLQA 711 (1463)
Q Consensus 637 ~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r~~~~~~aa~~IQ~~~R~~~~Rk~~~~~r---~a~i~iQ~ 711 (1463)
|.+..|..|+..+..+ -|++|.||||||+|+++.||..|...+....+.+|+.+|||++|+.|.+.. .|+.+||+
T Consensus 728 d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~ 807 (1930)
T KOG0161|consen 728 DGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQR 807 (1930)
T ss_pred ccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7799999999987654 599999999999999999999999999999999999999999998887653 47777777
Q ss_pred HhhccccccccccccchhhHHHHHHHHHHHHHHHHHHhhHHH
Q 000489 712 QCRGCLARKLYGVKRETAAAISLQKYVRRWLSRHAFLKLSLA 753 (1463)
Q Consensus 712 ~~Rg~laRk~~~~~r~~~aai~IQ~~~R~~~~Rk~y~~~r~a 753 (1463)
.+|.|+. .|.|.|.+.|.+++..
T Consensus 808 N~r~~~~-------------------lr~w~W~~Lf~kvkPL 830 (1930)
T KOG0161|consen 808 NIRAYLK-------------------LRTWPWWRLFTKVKPL 830 (1930)
T ss_pred HHHHHHh-------------------hccCHHHHHHHHHHHH
Confidence 7776642 3455666677776653
No 4
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=7.2e-171 Score=1567.61 Aligned_cols=688 Identities=56% Similarity=0.875 Sum_probs=654.4
Q ss_pred CCCCcCccccCCCCCchhHHHHHHHHhhcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHH
Q 000489 59 EHGGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADAS 138 (1463)
Q Consensus 59 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~~~~~~~l~PHi~avA~~A 138 (1463)
++.|+||||.|+|||||+|||||+.||..+.||||+|.+|||||||+++|++|++++|..|. ...+++.||+||||+.|
T Consensus 6 ~~~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~favA~~a 84 (862)
T KOG0160|consen 6 PPMGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAVAEEA 84 (862)
T ss_pred CCCCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhHHHHH
Confidence 44799999999999999999999999999999999999999999999999999999999999 88999999999999999
Q ss_pred HHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHhhcccCCCCCcHHHHHHhhccHHHhhccccccCCCCCCcccceE
Q 000489 139 YRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFV 218 (1463)
Q Consensus 139 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpilEaFGnAkT~~N~nSSRfgk~~ 218 (1463)
|+.|..++.|||||||||||||||+++|++|+|||+++++ ..+++||++||+|||||||||||||+|||||||||||+
T Consensus 85 y~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~--~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~i 162 (862)
T KOG0160|consen 85 YRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGS--VEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKVI 162 (862)
T ss_pred HHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhcc--chhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhHH
Confidence 9999999999999999999999999999999999999986 34678999999999999999999999999999999999
Q ss_pred EEEEcCCCcccceeeeeecccccccccccCCCccceehhhcccCh-HHHhhccCCCCCCcccccCCCccccCCCCcHHHH
Q 000489 219 EIQFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG-RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEEY 297 (1463)
Q Consensus 219 ~l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~-~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f 297 (1463)
+|+||.+|+|+||+|+||||||||||.++++|||||||||+|+|+ +++++|.|+++..|+|++|++|..+.++||+.+|
T Consensus 163 ei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~e~ 242 (862)
T KOG0160|consen 163 EITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAPEELEKLKLGTLRRFSYLNQSACVLISGVSDAEEF 242 (862)
T ss_pred HHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCchhhhccCcCccccceecccccchhhcccccHHHH
Confidence 999999999999999999999999999999999999999999987 7899999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCeeeecCCCCCcccccCcccHHHHHHHHHhcCCCHHHHHHHHhhceecc
Q 000489 298 MKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQT 377 (1463)
Q Consensus 298 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~l~~~l~~r~~~~ 377 (1463)
..|+.||..+||+.++|+.||++||||||||||+|..+.+.+.+.+.++ ++..+|+|+|++.+.|..+|+.|.+.+
T Consensus 243 ~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~----~~~~~a~Llg~~~~~l~~~L~~r~i~~ 318 (862)
T KOG0160|consen 243 LSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD----HLWTAAELLGCDEEALEQWLSKRKILT 318 (862)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch----HHHHHHHHhCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999998776665555554 799999999999999999999999999
Q ss_pred cCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC-CCCCcceeeeecccCCccCCCCchhHHHhhhhhhHH
Q 000489 378 REGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQ-DMNSQMQIGVLDIYGFESFKHNSFEQFCINFANEKL 456 (1463)
Q Consensus 378 ~~e~~~~~l~~~~a~~~rd~lak~lY~~lF~wiv~~iN~~l~~-~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNE~L 456 (1463)
+++.|++++++.+|...||++||.||++||+|+|++||.+|+. ++....+||||||||||+|+.|||||||||||||||
T Consensus 319 ~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkL 398 (862)
T KOG0160|consen 319 ARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKL 398 (862)
T ss_pred ccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHh
Confidence 9999999999999999999999999999999999999999997 444588999999999999999999999999999999
Q ss_pred hhhhhHHHHHHhHHHHhhcCCCcccccccChHHHHHHhhhccCccccccccccchhhhhhcccCCCCchhhHHHhhhhcc
Q 000489 457 QQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPVLS 536 (1463)
Q Consensus 457 q~~f~~~vf~~eq~~y~~E~i~~~~i~~~dn~~~l~lie~~~~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~~~~~ 536 (1463)
||+||+|||++||+||.+|||+|+.|+|.||++|+++||+ |.|+++||| |+|++|.++|++|..|||+.+.
T Consensus 399 qq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Lld--------e~c~lp~~t~~~~a~KL~~~~~ 469 (862)
T KOG0160|consen 399 QQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLD--------EECMLPKGTDETLAQKLYQTLK 469 (862)
T ss_pred hHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccc--------hhccCCCCCcchHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999 799999999 9999999999999999998632
Q ss_pred ---------------------------------------------------------------ccccCCCCccccHHHHH
Q 000489 537 ---------------------------------------------------------------EESSRSSYKFSSVASRF 553 (1463)
Q Consensus 537 ---------------------------------------------------------------~~~~~~~~~~~tv~~~f 553 (1463)
.++.+.+ +++||+++|
T Consensus 470 ~~~~f~kpr~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~~~~-~~~tv~s~f 548 (862)
T KOG0160|consen 470 RNKRFTKPRLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSSAKS-KRSTVGSQF 548 (862)
T ss_pred cCCccCCCCCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchhhhh-hcccHHHHH
Confidence 0011122 567999999
Q ss_pred HHHHHHHHHHHcccCCeeEEEecCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCCccchhhHHHHHhhhhhhhcc
Q 000489 554 KQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLLALEFMD 633 (1463)
Q Consensus 554 ~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~ 633 (1463)
+.+|..||++|++|+||||||||||+.+.|+.||..+|++|||||||||+|||+++|||+|++|.||+.||++|+| ...
T Consensus 549 k~~l~~Lm~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~~~ 627 (862)
T KOG0160|consen 549 KLQLISLMETLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-NDS 627 (862)
T ss_pred HHHHHHHHHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-chh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 332
Q ss_pred cchHHHHHHHHHHHHcccCccccccceeeecccccccccchhhhhhhhHHHHHHHHHhcchhhhhHHhhhhhHHHHHHHh
Q 000489 634 ESYEEKALTEKILRKLKLENFQLGRTKVFLRAGQIGILDSRRAEVLDSAARCIQHRWRTFIAHRNFVSIRAAAFVLQAQC 713 (1463)
Q Consensus 634 ~~~~~~~~~~~il~~~~~~~~~iGkTkVFlr~~~~~~Le~~r~~~~~~aa~~IQ~~~R~~~~Rk~~~~~r~a~i~iQ~~~ 713 (1463)
..|++..|+.||+.++.+.||+|+||||||+|+++.||.+|..++..+++.||+.+|+|+.|+.|..+|++++.||+++
T Consensus 628 -~~~~~~~~~~il~~~~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~ 706 (862)
T KOG0160|consen 628 -ASDDLSLCKVILEKLGLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYS 706 (862)
T ss_pred -cccchHHHHHHHHHhchhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccccccchhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000489 714 RGCLARKLYGVKRETAAAISLQKYVRRWLSRHAFLKLSLAAIVIQSNIRGFSIRE 768 (1463)
Q Consensus 714 Rg~laRk~~~~~r~~~aai~IQ~~~R~~~~Rk~y~~~r~aai~iQs~~Rg~~aR~ 768 (1463)
||+++|+ ..+ +..||+.||+.+|+|..|++|..++.+++.+|+.+||+.+|.
T Consensus 707 rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 707 RGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred hHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999998 444 778999999999999999999999999999999999999887
No 5
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=1.3e-170 Score=1593.50 Aligned_cols=611 Identities=69% Similarity=1.101 Sum_probs=578.5
Q ss_pred CCcCccccCCCCCchhHHHHHHHHhhcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHH
Q 000489 61 GGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYR 140 (1463)
Q Consensus 61 ~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~~~~~~~l~PHi~avA~~Ay~ 140 (1463)
+|+|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+|+||++++|+.|+++..+++|||||+||++||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHhhcccCCCCCcHHHHHHhhccHHHhhccccccCCCCCCcccceEEE
Q 000489 141 AMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEI 220 (1463)
Q Consensus 141 ~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpilEaFGnAkT~~N~nSSRfgk~~~l 220 (1463)
+|.+.++||||||||||||||||++|++|+|||.+++.......+|+++|+++||||||||||||++||||||||||++|
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l 160 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 160 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEE
Confidence 99999999999999999999999999999999999876554566899999999999999999999999999999999999
Q ss_pred EEcCCCcccceeeeeecccccccccccCCCccceehhhcccCh-HHHhhccCCCCCCcccccCCCccccCCCCcHHHHHH
Q 000489 221 QFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG-RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEEYMK 299 (1463)
Q Consensus 221 ~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~-~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 299 (1463)
+||.+|.|+||+|.+|||||||||+|++||||||||||||+|. +++++|+|.++.+|+||++++|..++++||+++|.+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~~ 240 (674)
T cd01384 161 QFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAAPPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLA 240 (674)
T ss_pred EECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcCCHHHHHHcCCCChHhCccccCCCCccccccchHHHHHH
Confidence 9999999999999999999999999999999999999999997 778899999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcCeeeecCCCCCcccccCcccHHHHHHHHHhcCCCHHHHHHHHhhceecccC
Q 000489 300 TKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQTRE 379 (1463)
Q Consensus 300 ~~~al~~lg~~~~~~~~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~l~~~l~~r~~~~~~ 379 (1463)
+++||+.|||+++++.+||+|||||||||||+|.+..+.|++.+.+..+...+..||.||||++++|.++||+|++.+++
T Consensus 241 ~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~ 320 (674)
T cd01384 241 TRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTPE 320 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987655566666555445689999999999999999999999999999
Q ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcceeeeecccCCccCCCCchhHHHhhhhhhHHhhh
Q 000489 380 GSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMNSQMQIGVLDIYGFESFKHNSFEQFCINFANEKLQQH 459 (1463)
Q Consensus 380 e~~~~~l~~~~a~~~rd~lak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNE~Lq~~ 459 (1463)
|.+++++++++|.++||+|||+||++||+|||.+||.+|+.+..+..+||||||||||+|+.|||||||||||||+|||+
T Consensus 321 e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~ 400 (674)
T cd01384 321 EVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQH 400 (674)
T ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccCcCCHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999998777788999999999999999999999999999999999
Q ss_pred hhHHHHHHhHHHHhhcCCCcccccccChHHHHHHhhhccCccccccccccchhhhhhcccCCCCchhhHHHhhhhcc---
Q 000489 460 FNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPVLS--- 536 (1463)
Q Consensus 460 f~~~vf~~eq~~y~~E~i~~~~i~~~dn~~~l~lie~~~~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~~~~~--- 536 (1463)
|+++||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|| |||++|++||++|++||+++++
T Consensus 401 f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLd--------ee~~~p~~td~~f~~kl~~~~~~~~ 472 (674)
T cd01384 401 FNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLD--------EACMFPKSTHETFAQKLYQTFKDHK 472 (674)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHH--------HHHcCCCCCHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999 9999999999999999986532
Q ss_pred ---------------------------------------------------------c-c-ccCCCCccccHHHHHHHHH
Q 000489 537 ---------------------------------------------------------E-E-SSRSSYKFSSVASRFKQQL 557 (1463)
Q Consensus 537 ---------------------------------------------------------~-~-~~~~~~~~~tv~~~f~~~l 557 (1463)
. . .+.+..+++||+++||.||
T Consensus 473 ~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~~~fk~~L 552 (674)
T cd01384 473 RFEKPKLSRTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSKFSSIGSRFKQQL 552 (674)
T ss_pred CCCCCCCCCCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccccccccccccHHHHHHHHH
Confidence 0 0 0011125679999999999
Q ss_pred HHHHHHHcccCCeeEEEecCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCCccchhhHHHHHhhhhhhhcccchH
Q 000489 558 QALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLLALEFMDESYE 637 (1463)
Q Consensus 558 ~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~ 637 (1463)
+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++.......+
T Consensus 553 ~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~ 632 (674)
T cd01384 553 QSLMETLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVLKGSSD 632 (674)
T ss_pred HHHHHHHhccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887655568
Q ss_pred HHHHHHHHHHHcccCccccccceeeecccccccccchhhhhh
Q 000489 638 EKALTEKILRKLKLENFQLGRTKVFLRAGQIGILDSRRAEVL 679 (1463)
Q Consensus 638 ~~~~~~~il~~~~~~~~~iGkTkVFlr~~~~~~Le~~r~~~~ 679 (1463)
+++.|+.||+.++.++|++|+||||||+|+++.||..|.+.+
T Consensus 633 ~~~~~~~il~~~~~~~~~~GktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 633 DKAACKKILDKMGLKGYQIGKTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred HHHHHHHHHHhCCCCCEEecCeeEEEcCCHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999998753
No 6
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=5e-167 Score=1571.28 Aligned_cols=604 Identities=44% Similarity=0.751 Sum_probs=563.3
Q ss_pred CCCCcCccccCCCCCchhHHHHHHHHhhcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHH
Q 000489 59 EHGGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADAS 138 (1463)
Q Consensus 59 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~~~~~~~l~PHi~avA~~A 138 (1463)
+.+++|||+.|++|||++|||+|+.||..+.||||+|+||||||||+++| +|++++++.|+++..+++||||||||+.|
T Consensus 3 ~~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHiyaiA~~A 81 (693)
T cd01377 3 KFDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLP-IYTEEVVEMYRGKKREEMPPHIFAIADNA 81 (693)
T ss_pred cccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHhhcccC------CCCCcHHHHHHhhccHHHhhccccccCCCCCC
Q 000489 139 YRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAA------GDDRNVEQQVLESNPLLEAFGNARTVRNDNSS 212 (1463)
Q Consensus 139 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~------~~~~~ve~~il~snpilEaFGnAkT~~N~nSS 212 (1463)
|+.|...++||||||||||||||||++|+||+|||.+++... .....|+++|+++||||||||||||+||||||
T Consensus 82 y~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSS 161 (693)
T cd01377 82 YRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSS 161 (693)
T ss_pred HHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCcc
Confidence 999999999999999999999999999999999999986532 12357999999999999999999999999999
Q ss_pred cccceEEEEEcCCCcccceeeeeecccccccccccCCCccceehhhcccCh--HHHhhccCCCC-CCcccccCCCccccC
Q 000489 213 RFGKFVEIQFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHP-SHFHYLNQSKVYELD 289 (1463)
Q Consensus 213 Rfgk~~~l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~-~~~~yl~~~~~~~~~ 289 (1463)
|||||++|+||.+|.|+||+|.+|||||||||+|++||||||||||||+|+ +++++|+|.++ .+|+||++++|. ++
T Consensus 162 RFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~~-~~ 240 (693)
T cd01377 162 RFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGELT-IP 240 (693)
T ss_pred ccceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCcc-CC
Confidence 999999999999999999999999999999999999999999999999997 78889999876 999999998864 78
Q ss_pred CCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCeeeecCCCCCcccccCcccHHHHHHHHHhcCCCHHHHHHH
Q 000489 290 GVSSAEEYMKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLAT 369 (1463)
Q Consensus 290 ~~~d~~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~l~~~ 369 (1463)
++||+++|.+++.||+.|||+++++.+||+|||||||||||+|.+.+..+.+.+.+. .++..||.|||||+++|.++
T Consensus 241 ~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~ 317 (693)
T cd01377 241 GVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGT---EEADKAAHLLGVNSADLLKA 317 (693)
T ss_pred CCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCCh---HHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999987544444455443 37999999999999999999
Q ss_pred HhhceecccCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcceeeeecccCCccCCCCchhHHHh
Q 000489 370 LCTRTIQTREGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMNSQMQIGVLDIYGFESFKHNSFEQFCI 449 (1463)
Q Consensus 370 l~~r~~~~~~e~~~~~l~~~~a~~~rd~lak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlci 449 (1463)
||++++.++++.+++|+++++|..+||+|||+||++||+|||.+||.+|..+.....+||||||||||+|+.||||||||
T Consensus 318 l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcI 397 (693)
T cd01377 318 LLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIFDFNSFEQLCI 397 (693)
T ss_pred hcceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEecccccccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877778999999999999999999999999
Q ss_pred hhhhhHHhhhhhHHHHHHhHHHHhhcCCCcccccc-cChHHHHHHhhhccCccccccccccchhhhhhcccCCCCchhhH
Q 000489 450 NFANEKLQQHFNEHVFKMEQEEYRREEINWSYIEF-IDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFV 528 (1463)
Q Consensus 450 NyaNE~Lq~~f~~~vf~~eq~~y~~E~i~~~~i~~-~dn~~~l~lie~~~~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~ 528 (1463)
|||||+|||+|++|||+.||++|.+|||+|+.|+| .||++|||||+++|.|||++|| |||++|++||++|+
T Consensus 398 NyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLd--------ee~~~~~~tD~~~~ 469 (693)
T cd01377 398 NYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLD--------EECVFPKATDKTFV 469 (693)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhh--------HHhcCCCCCHHHHH
Confidence 99999999999999999999999999999999999 5999999999999999999999 99999999999999
Q ss_pred HHhhhhcc--------------------------------------------------------------cc-c------
Q 000489 529 AGLFPVLS--------------------------------------------------------------EE-S------ 539 (1463)
Q Consensus 529 ~kl~~~~~--------------------------------------------------------------~~-~------ 539 (1463)
+|+++.|. .. .
T Consensus 470 ~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~ 549 (693)
T cd01377 470 EKLYDNHLGKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGDGG 549 (693)
T ss_pred HHHHHHhcCCCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccccc
Confidence 99976421 00 0
Q ss_pred -----cCCCCccccHHHHHHHHHHHHHHHHcccCCeeEEEecCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCCc
Q 000489 540 -----SRSSYKFSSVASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTR 614 (1463)
Q Consensus 540 -----~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r 614 (1463)
.+...+++||+++|+.||+.||++|++|+||||||||||+.++|+.||.+.|++||||+||||+|||+++|||+|
T Consensus 550 ~~~~~~~~~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R 629 (693)
T cd01377 550 GGGGKKKKGGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNR 629 (693)
T ss_pred cccCCCCcCCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 000113479999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHhhhhhhhcc-cchHHHHHHHHHHHHcccC--ccccccceeeecccccccccchh
Q 000489 615 RTYSDFVDRFGLLALEFMD-ESYEEKALTEKILRKLKLE--NFQLGRTKVFLRAGQIGILDSRR 675 (1463)
Q Consensus 615 ~~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r 675 (1463)
++|.+|+.||++|++.... ...|.++.|+.||+.++++ +|++|+||||||++++..||++|
T Consensus 630 ~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 630 ILYAEFRQRYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred ccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 9999999999999987642 2357899999999998774 79999999999999999999876
No 7
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=5.6e-167 Score=1562.99 Aligned_cols=598 Identities=44% Similarity=0.745 Sum_probs=560.4
Q ss_pred CcCccccCCCCCchhHHHHHHHHhhcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHHH
Q 000489 62 GVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRA 141 (1463)
Q Consensus 62 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~~~~~~~l~PHi~avA~~Ay~~ 141 (1463)
|+|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|++++++.|+++..+++||||||||+.||+.
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILP-IYTADEIKLYKNKSIGELPPHIFAISDNAYTN 79 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCC-CCCHHHHHHHhcCCccccCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHhhcccCCCCCcHHHHHHhhccHHHhhccccccCCCCCCcccceEEEE
Q 000489 142 MISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQ 221 (1463)
Q Consensus 142 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpilEaFGnAkT~~N~nSSRfgk~~~l~ 221 (1463)
|.++++||||||||||||||||++|++|+|||.+++.. ..|+++|++|||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~ 155 (671)
T cd01381 80 MQREKKNQCIIISGESGAGKTESTKLILQYLAAISGKH----SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIH 155 (671)
T ss_pred HHHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEE
Confidence 99999999999999999999999999999999997642 46999999999999999999999999999999999999
Q ss_pred EcCCCcccceeeeeecccccccccccCCCccceehhhcccCh--HHHhhccCCCCCCcccccCCCccccCCCCcHHHHHH
Q 000489 222 FDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEEYMK 299 (1463)
Q Consensus 222 f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 299 (1463)
||.+|.|+||+|.+|||||||||+|++||||||||||||+|+ +++++|+|.++.+|+||++++|..++++||+++|.+
T Consensus 156 F~~~g~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~ 235 (671)
T cd01381 156 FNKRGAIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFAD 235 (671)
T ss_pred ECCCCcEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHH
Confidence 999999999999999999999999999999999999999997 788999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcCeeeecCCC--CCcccccCcccHHHHHHHHHhcCCCHHHHHHHHhhceecc
Q 000489 300 TKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKE--HDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQT 377 (1463)
Q Consensus 300 ~~~al~~lg~~~~~~~~i~~ilaaiLhlGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~lLgv~~~~l~~~l~~r~~~~ 377 (1463)
++.||+.|||+++++.+||+|||||||||||+|.+... .+.+.+.+. .+++.||.|||||+++|.++||+|++.+
T Consensus 236 ~~~al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~---~~l~~~a~LLgv~~~~L~~~lt~~~~~~ 312 (671)
T cd01381 236 IRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDT---PNLQRVAQLLGVPIQDLMDALTSRTIFT 312 (671)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCCh---HHHHHHHHHhCCCHHHHhhhhceEEEEe
Confidence 99999999999999999999999999999999986532 234444443 4799999999999999999999999999
Q ss_pred cCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC-CCCcceeeeecccCCccCCCCchhHHHhhhhhhHH
Q 000489 378 REGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQD-MNSQMQIGVLDIYGFESFKHNSFEQFCINFANEKL 456 (1463)
Q Consensus 378 ~~e~~~~~l~~~~a~~~rd~lak~lY~~lF~wiv~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNE~L 456 (1463)
+++.+.+|+++++|..+||||||+||++||+|||.+||.+|..+ .....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkL 392 (671)
T cd01381 313 RGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENL 392 (671)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999755 45678999999999999999999999999999999
Q ss_pred hhhhhHHHHHHhHHHHhhcCCCcccccccChHHHHHHhhhccCccccccccccchhhhhhcccCCCCchhhHHHhhhhcc
Q 000489 457 QQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPVLS 536 (1463)
Q Consensus 457 q~~f~~~vf~~eq~~y~~E~i~~~~i~~~dn~~~l~lie~~~~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~~~~~ 536 (1463)
||+||+|||+.||++|.+|||+|..|+|.||++|||||+++|.|||++|| |||++|+|||++|++|+++.+.
T Consensus 393 Q~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLD--------ee~~~p~~td~~f~~kl~~~~~ 464 (671)
T cd01381 393 QQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLID--------EESKFPKGTDQTMLEKLHSQHG 464 (671)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceech--------HhhcCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999976421
Q ss_pred -------------------------------------------------------------cc---ccCCCCccccHHHH
Q 000489 537 -------------------------------------------------------------EE---SSRSSYKFSSVASR 552 (1463)
Q Consensus 537 -------------------------------------------------------------~~---~~~~~~~~~tv~~~ 552 (1463)
.. ......+.+||+++
T Consensus 465 ~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~k~~tv~~~ 544 (671)
T cd01381 465 LHSNYLKPKSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAETRKKKPTLSSQ 544 (671)
T ss_pred CCCCcccCCCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccccccccccCCcHHHH
Confidence 00 00112255799999
Q ss_pred HHHHHHHHHHHHcccCCeeEEEecCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCCccchhhHHHHHhhhhhhhc
Q 000489 553 FKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLLALEFM 632 (1463)
Q Consensus 553 f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~ 632 (1463)
|+.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++...
T Consensus 545 fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~ 624 (671)
T cd01381 545 FRRSLDLLMRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVK 624 (671)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred cc--chHHHHHHHHHHHHccc--Cccccccceeeecccccccccchh
Q 000489 633 DE--SYEEKALTEKILRKLKL--ENFQLGRTKVFLRAGQIGILDSRR 675 (1463)
Q Consensus 633 ~~--~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 675 (1463)
.. ..|.+..|+.|++.+.+ ++|++|+||||||+++++.||+.|
T Consensus 625 ~~~~~~~~~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 625 PAYKQDCLAGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred cccccccHHHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 32 24678899999998765 589999999999999999999876
No 8
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=1.2e-166 Score=1567.33 Aligned_cols=601 Identities=49% Similarity=0.837 Sum_probs=561.1
Q ss_pred CcCccccCCCCCchhHHHHHHHHhhcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHHH
Q 000489 62 GVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRA 141 (1463)
Q Consensus 62 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~~~~~~~l~PHi~avA~~Ay~~ 141 (1463)
|+|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|++++++.|+++..+++||||||||+.||+.
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 79 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLP-IYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQ 79 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCC-cCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHhhcccC--CCCCcHHHHHHhhccHHHhhccccccCCCCCCcccceEE
Q 000489 142 MISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAA--GDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVE 219 (1463)
Q Consensus 142 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~--~~~~~ve~~il~snpilEaFGnAkT~~N~nSSRfgk~~~ 219 (1463)
|..+++||||||||||||||||++|+||+|||.++++.. ....+|+++|+++||||||||||||++||||||||||++
T Consensus 80 m~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~ 159 (691)
T cd01380 80 MTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQ 159 (691)
T ss_pred HHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEE
Confidence 999999999999999999999999999999999986542 234679999999999999999999999999999999999
Q ss_pred EEEcCCCcccceeeeeecccccccccccCCCccceehhhcccCh--HHHhhccCCCCCCcccccCCCccccCCCCcHHHH
Q 000489 220 IQFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEEY 297 (1463)
Q Consensus 220 l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f 297 (1463)
|+||.+|.|+||+|.+|||||||||+|++||||||||||||+|. ++++.|+|.++.+|+||++++|..++++||+++|
T Consensus 160 l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f 239 (691)
T cd01380 160 ILFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDF 239 (691)
T ss_pred EEECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHH
Confidence 99999999999999999999999999999999999999999996 7889999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCeeeecCCCCCcccccCcccHHHHHHHHHhcCCCHHHHHHHHhhceecc
Q 000489 298 MKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQT 377 (1463)
Q Consensus 298 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~l~~~l~~r~~~~ 377 (1463)
..|+.||+.|||+++++.+||+|||||||||||+|.+..+.++....+ ...++.||+||||++++|.++||+|++.+
T Consensus 240 ~~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 316 (691)
T cd01380 240 NATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRNDSSSISPK---DENLQIACELLGVDASDLRKWLVKRQIVT 316 (691)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCccceecCC---hHHHHHHHHHhCCCHHHHHHHHHhCEEEE
Confidence 999999999999999999999999999999999998754333222222 23799999999999999999999999999
Q ss_pred cCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC---CCCcceeeeecccCCccCCCCchhHHHhhhhhh
Q 000489 378 REGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQD---MNSQMQIGVLDIYGFESFKHNSFEQFCINFANE 454 (1463)
Q Consensus 378 ~~e~~~~~l~~~~a~~~rd~lak~lY~~lF~wiv~~iN~~l~~~---~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNE 454 (1463)
++|.+++++++++|.++||+|||+||++||+|||.+||.+|... .....+||||||||||+|+.|||||||||||||
T Consensus 317 ~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNE 396 (691)
T cd01380 317 RSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANE 396 (691)
T ss_pred CCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhH
Confidence 99999999999999999999999999999999999999999876 456789999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHhHHHHhhcCCCcccccccChHHHHHHhhhccCccccccccccchhhhhhcccCCCCchhhHHHhhhh
Q 000489 455 KLQQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPV 534 (1463)
Q Consensus 455 ~Lq~~f~~~vf~~eq~~y~~E~i~~~~i~~~dn~~~l~lie~~~~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~~~ 534 (1463)
+|||+||+|+|+.||++|.+|||+|++|+|.||++|||||++ |.|||++|| |||++|+|||++|++||++.
T Consensus 397 kLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLd--------ee~~~p~~td~~f~~kl~~~ 467 (691)
T cd01380 397 KLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLD--------EECRLPKGSDESWAQKLYNK 467 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhH--------HhhcCCCCChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997 599999999 99999999999999998764
Q ss_pred cc--------------------------------------------------------------cc---cc---------
Q 000489 535 LS--------------------------------------------------------------EE---SS--------- 540 (1463)
Q Consensus 535 ~~--------------------------------------------------------------~~---~~--------- 540 (1463)
|. .. ..
T Consensus 468 ~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~ 547 (691)
T cd01380 468 LPKKKNPHFEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKP 547 (691)
T ss_pred hcccCCCCccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccccccccccccc
Confidence 21 00 00
Q ss_pred -------CCCCccccHHHHHHHHHHHHHHHHcccCCeeEEEecCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCC
Q 000489 541 -------RSSYKFSSVASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPT 613 (1463)
Q Consensus 541 -------~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~ 613 (1463)
....+.+||+++|+.||+.||++|++|+||||||||||+.|+|+.||.+.|++||||+||||+|||+|+|||+
T Consensus 548 ~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~ 627 (691)
T cd01380 548 AAKRPPKRAKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPS 627 (691)
T ss_pred cccccccccccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCc
Confidence 0012457999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHhhhhhhhcccchHHHHHHHHHHHHccc--Cccccccceeeecccccccccchh
Q 000489 614 RRTYSDFVDRFGLLALEFMDESYEEKALTEKILRKLKL--ENFQLGRTKVFLRAGQIGILDSRR 675 (1463)
Q Consensus 614 r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 675 (1463)
|++|.+|+.||++|+|.......|.++.|+.||+.+.. .+|++|+||||||+++++.||+.|
T Consensus 628 R~~~~~F~~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 628 RWTYEEFAQRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred cccHHHHHHHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 99999999999999998663445889999999999875 589999999999999999999876
No 9
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=9.1e-164 Score=1409.68 Aligned_cols=720 Identities=38% Similarity=0.626 Sum_probs=635.3
Q ss_pred cCCcEEEEecCCCCEEEEEEEEeeCCCEEEEEe--cCCcEEEEcCcccccccCCCCCCCCCcCccccCCCCCchhHHHHH
Q 000489 4 RKGSKVWVEDKDLAWVAAEVVSDSVGRHVQVLT--ATGKKVLAAPERVFLRATDDDEEHGGVDDMTKLTYLNEPGVLYNL 81 (1463)
Q Consensus 4 ~~g~~vw~~~~~~~~~~~~v~~~~~~~~~~v~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~l~e~~vl~~L 81 (1463)
.-|-.||++|+.++|+.|+| ++...+.+++.. ..|.+++.-.+++ ++ ... .++.++||-|.|-||||+++|||+
T Consensus 2 e~gr~VWi~d~tdGf~~~rI-~di~~~~ftl~~~d~k~~t~~~~~edv-~a-~ee-D~~k~veDNC~Lm~LNEATlL~Ni 77 (1259)
T KOG0163|consen 2 EDGRLVWIRDATDGFIAGRI-TDIGAKGFTLTPLDRKGPTVTRHFEDV-HA-CEE-DSPKDVEDNCELMHLNEATLLNNI 77 (1259)
T ss_pred CCCceEeecccccchhheee-eeecCCceEEeecccCCcceeehhhhc-cc-ccc-ccccccccccceeeccHHHHhhhh
Confidence 35889999999999999999 788777677754 4677888888888 66 332 256789999999999999999999
Q ss_pred HHHhhcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCCc
Q 000489 82 ERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRAMISEHQSQSILVSGESGAGK 161 (1463)
Q Consensus 82 ~~R~~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~~~~~~~l~PHi~avA~~Ay~~m~~~~~~QsIiisGeSGaGK 161 (1463)
+.||.+|.||||+.+||||||||..++++|+++.+..|+|+.+|.+||||||||+.|||.|..-+.+|||||||||||||
T Consensus 78 k~RY~k~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGK 157 (1259)
T KOG0163|consen 78 KLRYYKDKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGK 157 (1259)
T ss_pred hhhhccCchhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHhhccHHHhhccccccCCCCCCcccceEEEEEcCCCcccceeeeeeccccc
Q 000489 162 TETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDTNGRISGAAIRTYLLERS 241 (1463)
Q Consensus 162 Te~~k~~~~yla~~~~~~~~~~~~ve~~il~snpilEaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEks 241 (1463)
||++|++++||+.--|+ +..|+++||++||||||||||||+||+||||||||++|||+.+|.++|+-+.+||||||
T Consensus 158 TEstK~vLrYLces~gs----ag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkS 233 (1259)
T KOG0163|consen 158 TESTKAVLRYLCESWGS----AGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKS 233 (1259)
T ss_pred chhHHHHHHHHHhccCC----CCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHh
Confidence 99999999999986554 34799999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCccceehhhcccCh--HHHhhccCCCCCCcccccCCC--------------------------ccccCCCCc
Q 000489 242 RVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSK--------------------------VYELDGVSS 293 (1463)
Q Consensus 242 Rvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~--------------------------~~~~~~~~d 293 (1463)
|||.|+.+|||||||||||||+ +.+++|.|+.|++|+||+.|- ...-+-+||
T Consensus 234 RiC~Qaa~ERNYHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD 313 (1259)
T KOG0163|consen 234 RICRQAAEERNYHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDD 313 (1259)
T ss_pred HHHHhhhcccchhHHHHHHcCCCHHHHHHhccCCchhhhHHhcchhhhccCcchhhcCcccccCccccccCcccCccccc
Confidence 9999999999999999999997 678899999999999998431 111223689
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCeeeecCCCC--CcccccCcccHHHHHHHHHhcCCCHHHHHHHHh
Q 000489 294 AEEYMKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEH--DSSVIKDQKSSFHLQMAADLFMCDVNLLLATLC 371 (1463)
Q Consensus 294 ~~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhlGni~f~~~~~~--~~~~~~~~~~~~~l~~~a~lLgv~~~~l~~~l~ 371 (1463)
..+|..+..||+.+|++++|...||+++|||||||||+|.+..+. .++.+.+. +...|..+|+|||+|+++|.-.||
T Consensus 314 ~~dF~rl~~Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n~-seqsL~~~a~LLGld~~elr~~L~ 392 (1259)
T KOG0163|consen 314 YQDFHRLEKALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSNG-SEQSLTIAAELLGLDQTELRTGLC 392 (1259)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceecccC-chhhHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999875422 23344433 456799999999999999999999
Q ss_pred hceeccc-----CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcceeeeecccCCccCCCCchhH
Q 000489 372 TRTIQTR-----EGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMNSQMQIGVLDIYGFESFKHNSFEQ 446 (1463)
Q Consensus 372 ~r~~~~~-----~e~~~~~l~~~~a~~~rd~lak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQ 446 (1463)
.|+|.+. |-.|.+||.+.+|..+||||||++|++||||||.+||.++.-. .+..|||||||.|||-|.+|||||
T Consensus 393 aRvMqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe-~St~fiGVLDiAGFEyf~~NSFEQ 471 (1259)
T KOG0163|consen 393 ARVMQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFE-KSTFFIGVLDIAGFEYFAVNSFEQ 471 (1259)
T ss_pred HHHHHhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccccc-cccceeEEEeeccceeeecccHHH
Confidence 9999753 3368899999999999999999999999999999999999654 477899999999999999999999
Q ss_pred HHhhhhhhHHhhhhhHHHHHHhHHHHhhcCCCcccccccChHHHHHHhhhccCccccccccccchhhhhhcccCCCCchh
Q 000489 447 FCINFANEKLQQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCP 526 (1463)
Q Consensus 447 lciNyaNE~Lq~~f~~~vf~~eq~~y~~E~i~~~~i~~~dn~~~l~lie~~~~Gil~lLd~~~~~~~~ee~~~p~~~~~~ 526 (1463)
|||||+|||||++||+.+++.|||.|.+||+....|+|.|||+||+|||.|..|||+||| ||..+|++++..
T Consensus 472 FCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLD--------EEaklP~~s~qh 543 (1259)
T KOG0163|consen 472 FCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLD--------EEAKLPKPSYQH 543 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhh--------hhccCCCcchHH
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred hHHHhhhh----cc------------------------------------------------------------------
Q 000489 527 FVAGLFPV----LS------------------------------------------------------------------ 536 (1463)
Q Consensus 527 f~~kl~~~----~~------------------------------------------------------------------ 536 (1463)
|....++. |.
T Consensus 544 FT~~vHe~~k~HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~ 623 (1259)
T KOG0163|consen 544 FTARVHESNKNHFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLVSLFP 623 (1259)
T ss_pred HHHHHHHhhhcceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHHHHcc
Confidence 98766543 10
Q ss_pred cccc------CCCCccccHHHHHHHHHHHHHHHHcccCCeeEEEecCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhc
Q 000489 537 EESS------RSSYKFSSVASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAG 610 (1463)
Q Consensus 537 ~~~~------~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~g 610 (1463)
.+++ +...++-|||++|+.||..||+.|++|..|||||||||..+.|+.||...++.||.|+|++-.++++..|
T Consensus 624 S~s~t~a~~~~gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~G 703 (1259)
T KOG0163|consen 624 SGSSTSAKQTRGKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHG 703 (1259)
T ss_pred CCCCCccccccceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcC
Confidence 0111 1123567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhhHHHHHhhhhhhhcccchHHHHHHHHHHHHcccC--ccccccceeeecccccccccchhhhhhhhHHHHHHH
Q 000489 611 YPTRRTYSDFVDRFGLLALEFMDESYEEKALTEKILRKLKLE--NFQLGRTKVFLRAGQIGILDSRRAEVLDSAARCIQH 688 (1463)
Q Consensus 611 yp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r~~~~~~aa~~IQ~ 688 (1463)
||+|..|.|.+.-|.-.+|+... ..|++-.|+.+...+|++ +|+||.||||||+|.++..++....--...+..|+
T Consensus 704 yPSR~~F~dLYamYkk~lPpkLa-rLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv~- 781 (1259)
T KOG0163|consen 704 YPSRTSFADLYAMYKKVLPPKLA-RLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELVA- 781 (1259)
T ss_pred CCccccHHHHHHHHHhhCCHhhh-cCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHHHHH-
Confidence 99999999999999988887664 468999999999999986 79999999999999999999876665555555554
Q ss_pred HHhcchhhhhHHhhhhhHHHHHHHhhcccccccccc-ccchhhHHHHHHHHHHHHHHHHHHhhHH
Q 000489 689 RWRTFIAHRNFVSIRAAAFVLQAQCRGCLARKLYGV-KRETAAAISLQKYVRRWLSRHAFLKLSL 752 (1463)
Q Consensus 689 ~~R~~~~Rk~~~~~r~a~i~iQ~~~Rg~laRk~~~~-~r~~~aai~IQ~~~R~~~~Rk~y~~~r~ 752 (1463)
.+..|+.+.+|++..-++..+ -+.-.+ .-|..+++++|+++|||++|+++.....
T Consensus 782 kVn~WLv~sRWkk~q~~a~sV---------IKLkNkI~yRae~v~k~Q~~~Rg~L~rkr~~~ri~ 837 (1259)
T KOG0163|consen 782 KVNKWLVRSRWKKSQYGALSV---------IKLKNKIIYRAECVLKAQRIARGYLARKRHRPRIA 837 (1259)
T ss_pred HHHHHHHHhHHHHhhhhhhhe---------eehhhHHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 467788888887654433221 111111 1245678899999999999998866543
No 10
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=7.4e-166 Score=1551.22 Aligned_cols=597 Identities=48% Similarity=0.808 Sum_probs=556.8
Q ss_pred CCCCcCccccCCCCCchhHHHHHHHHhhcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHH
Q 000489 59 EHGGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADAS 138 (1463)
Q Consensus 59 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~~~~~~~l~PHi~avA~~A 138 (1463)
..+++|||+.|++|||++|||+|+.||..++||||+|+||||||||+.+| +|++++++.|+++. .+||||||||+.|
T Consensus 6 ~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~y~~~~--~~~PHifaiA~~A 82 (677)
T cd01383 6 ILDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVP-LYGNDYIEAYRKKS--NDSPHVYAIADTA 82 (677)
T ss_pred cccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCC-CCCHHHHHHhhCCC--CCCCCHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999998 99999999998764 4799999999999
Q ss_pred HHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHhhcccCCCCCcHHHHHHhhccHHHhhccccccCCCCCCcccceE
Q 000489 139 YRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFV 218 (1463)
Q Consensus 139 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpilEaFGnAkT~~N~nSSRfgk~~ 218 (1463)
|+.|..+++||||||||||||||||++|++|+|||.++++ ..++++|+++||||||||||||++||||||||||+
T Consensus 83 y~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~-----~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~ 157 (677)
T cd01383 83 YNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGG-----SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLI 157 (677)
T ss_pred HHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHHHhhccccCCCCCcCccceeE
Confidence 9999999999999999999999999999999999999753 26999999999999999999999999999999999
Q ss_pred EEEEcCCCcccceeeeeecccccccccccCCCccceehhhcccCh--HHHhhccCCCCCCcccccCCCccccCCCCcHHH
Q 000489 219 EIQFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEE 296 (1463)
Q Consensus 219 ~l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~ 296 (1463)
+|+||.+|.|+||+|.+|||||||||.|++||||||||||||+|+ +++++|+|.++.+|+||++++|..++++||+.+
T Consensus 158 ~l~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~ 237 (677)
T cd01383 158 EIHFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQR 237 (677)
T ss_pred EEEECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHH
Confidence 999999999999999999999999999999999999999999997 778899999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCeeeecCCCCCcccccCcccHHHHHHHHHhcCCCHHHHHHHHhhceec
Q 000489 297 YMKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQ 376 (1463)
Q Consensus 297 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~l~~~l~~r~~~ 376 (1463)
|..|+.||+.|||+++++.+||+|||||||||||+|.+.++.+...+.++ .++..||.|||||+++|.++||++++.
T Consensus 238 f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~l~~~~~~ 314 (677)
T cd01383 238 FHTLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVAD---EALSTAAKLIGCNIEDLMLALSTRKMH 314 (677)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCCh---HHHHHHHHHhCCCHHHHHHHhhhcEEE
Confidence 99999999999999999999999999999999999986443332333332 379999999999999999999999999
Q ss_pred ccCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC-CCcceeeeecccCCccCCCCchhHHHhhhhhhH
Q 000489 377 TREGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDM-NSQMQIGVLDIYGFESFKHNSFEQFCINFANEK 455 (1463)
Q Consensus 377 ~~~e~~~~~l~~~~a~~~rd~lak~lY~~lF~wiv~~iN~~l~~~~-~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNE~ 455 (1463)
++++.+.+++++++|..+||+|||+||++||+|||.+||.+|.... ....+||||||||||+|+.||||||||||||||
T Consensus 315 ~~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEk 394 (677)
T cd01383 315 VNNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANER 394 (677)
T ss_pred eCCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998653 346799999999999999999999999999999
Q ss_pred HhhhhhHHHHHHhHHHHhhcCCCcccccccChHHHHHHhhhccCccccccccccchhhhhhcccCCCCchhhHHHhhhhc
Q 000489 456 LQQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPVL 535 (1463)
Q Consensus 456 Lq~~f~~~vf~~eq~~y~~E~i~~~~i~~~dn~~~l~lie~~~~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~~~~ 535 (1463)
|||+|+++||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|| |||++|++||++|++||++++
T Consensus 395 LQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLd--------ee~~~p~~tD~~f~~kl~~~~ 466 (677)
T cd01383 395 LQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLD--------EESTFPNATDLTFANKLKQHL 466 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhH--------HHHcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999 999999999999999998652
Q ss_pred c---------------------------------------------------------cc----c---------cCCCCc
Q 000489 536 S---------------------------------------------------------EE----S---------SRSSYK 545 (1463)
Q Consensus 536 ~---------------------------------------------------------~~----~---------~~~~~~ 545 (1463)
+ .. + ..+..+
T Consensus 467 ~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~~f~~~~~~~s~~~~~~~~~~~~~~~ 546 (677)
T cd01383 467 KTNSCFRGERGGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQLFASSMLIQSPVVGPLYVASAADSQ 546 (677)
T ss_pred CCCCCCCCCCCCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHHHHHhhhhcccccccccccccccccc
Confidence 1 00 0 001124
Q ss_pred cccHHHHHHHHHHHHHHHHcccCCeeEEEecCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCCccchhhHHHHHh
Q 000489 546 FSSVASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFG 625 (1463)
Q Consensus 546 ~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~ 625 (1463)
..||+++|+.||+.||++|++|+||||||||||+.|+|+.||.+.|++||||+||||+|||+|+|||+|++|.+|+.||+
T Consensus 547 ~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~ 626 (677)
T cd01383 547 KLSVGTKFKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYG 626 (677)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccchHHHHHHHHHHHHcccC--ccccccceeeecccccccccchh
Q 000489 626 LLALEFMDESYEEKALTEKILRKLKLE--NFQLGRTKVFLRAGQIGILDSRR 675 (1463)
Q Consensus 626 ~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r 675 (1463)
+|++.... ..|++..|+.||+.++++ +|++|+||||||+|+++.||..|
T Consensus 627 ~L~~~~~~-~~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 627 FLLLENIA-SQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred HhCccccC-CCCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 99987543 347888999999998764 89999999999999999999876
No 11
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=2.1e-165 Score=1552.32 Aligned_cols=600 Identities=44% Similarity=0.732 Sum_probs=561.3
Q ss_pred CcCccccCCCCCchhHHHHHHHHhhcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHHH
Q 000489 62 GVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRA 141 (1463)
Q Consensus 62 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~~~~~~~l~PHi~avA~~Ay~~ 141 (1463)
|+|||+.|++|||++|||+|+.||.+++||||+|+||||||||+++| +|++++++.|+++..+++|||||+||+.||+.
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~ 79 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLP-IYTDETIELYKGKSRYELPPHIYALADNAYRS 79 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCC-CCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHhhcccCCCCCcHHHHHHhhccHHHhhccccccCCCCCCcccceEEEE
Q 000489 142 MISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQ 221 (1463)
Q Consensus 142 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpilEaFGnAkT~~N~nSSRfgk~~~l~ 221 (1463)
|..+++||||||||||||||||++|++|+||+.++++.. ....++++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~-~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~ 158 (674)
T cd01378 80 MKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQ-KVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQ 158 (674)
T ss_pred HHHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEE
Confidence 999999999999999999999999999999999986543 2346999999999999999999999999999999999999
Q ss_pred EcCCCcccceeeeeecccccccccccCCCccceehhhcccCh--HHHhhccCCCCCCcccccCCCccccCCCCcHHHHHH
Q 000489 222 FDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEEYMK 299 (1463)
Q Consensus 222 f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 299 (1463)
||.+|.|+||+|.+|||||||||+|++||||||||||||+|+ +++++|+|.++++|+||++++|+.++++||+++|.+
T Consensus 159 f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 238 (674)
T cd01378 159 FDFKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKE 238 (674)
T ss_pred ECCCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHH
Confidence 999999999999999999999999999999999999999997 788999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcCeeeecCCCCCcccccCcccHHHHHHHHHhcCCCHHHHHHHHhhceecccC
Q 000489 300 TKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQTRE 379 (1463)
Q Consensus 300 ~~~al~~lg~~~~~~~~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~l~~~l~~r~~~~~~ 379 (1463)
+++||+.|||+++++.+||+|||||||||||+|.+..+. .+.+.+. .+++.||.||||++++|.++||+|++.+++
T Consensus 239 ~~~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~~-~~~~~~~---~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 314 (674)
T cd01378 239 TQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGDG-AAVISDK---DVLDFAAYLLGVDPSELEKALTSRTIETGG 314 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCCC-ccccCCh---HHHHHHHHHcCCCHHHHHHHhcccEEEeCC
Confidence 999999999999999999999999999999999875432 2334433 479999999999999999999999999998
Q ss_pred ----ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC-CCCcceeeeecccCCccCCCCchhHHHhhhhhh
Q 000489 380 ----GSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQD-MNSQMQIGVLDIYGFESFKHNSFEQFCINFANE 454 (1463)
Q Consensus 380 ----e~~~~~l~~~~a~~~rd~lak~lY~~lF~wiv~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNE 454 (1463)
|.+++|+++++|.++||+|||+||++||+|||.+||.+|... .....+||||||||||+|+.|||||||||||||
T Consensus 315 ~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNE 394 (674)
T cd01378 315 GGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNE 394 (674)
T ss_pred CCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHH
Confidence 999999999999999999999999999999999999999875 556789999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHhHHHHhhcCCCcccccccChHHHHHHhhh-ccCccccccccccchhhhhhcccC-CCCchhhHHHhh
Q 000489 455 KLQQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEK-VTYQTNTFLDKNRDYVVVEHCNLL-SSSKCPFVAGLF 532 (1463)
Q Consensus 455 ~Lq~~f~~~vf~~eq~~y~~E~i~~~~i~~~dn~~~l~lie~-~~~Gil~lLd~~~~~~~~ee~~~p-~~~~~~f~~kl~ 532 (1463)
|||++||+|+|+.||++|.+|||+|+.|+|.||++|||||++ +|.|||++|| |||++| ++||++|++|++
T Consensus 395 kLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLd--------ee~~~p~~~tD~~~~~kl~ 466 (674)
T cd01378 395 KLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILD--------DVCATPHEGTDQTFLEKLN 466 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHH--------HHHcCCCCCChHHHHHHHH
Confidence 999999999999999999999999999999999999999999 8999999999 999999 999999999998
Q ss_pred hhcc-----------------------------------------------------------c--cccCCCCccccHHH
Q 000489 533 PVLS-----------------------------------------------------------E--ESSRSSYKFSSVAS 551 (1463)
Q Consensus 533 ~~~~-----------------------------------------------------------~--~~~~~~~~~~tv~~ 551 (1463)
+++. . ....+..+.+||++
T Consensus 467 ~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~tv~~ 546 (674)
T cd01378 467 KKFSSHPHSDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDADSKKRPTTAGF 546 (674)
T ss_pred HHhccCCCCCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcccccccccCCCCcHHH
Confidence 7532 0 00011124579999
Q ss_pred HHHHHHHHHHHHHcccCCeeEEEecCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCCccchhhHHHHHhhhhhhh
Q 000489 552 RFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLLALEF 631 (1463)
Q Consensus 552 ~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~ 631 (1463)
+||.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|.|||+|++|.+|+.||++|++..
T Consensus 547 ~fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~ 626 (674)
T cd01378 547 KIKTSANALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKT 626 (674)
T ss_pred HHHHHHHHHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cc-cchHHHHHHHHHHHHccc--Cccccccceeeeccc-ccccccchh
Q 000489 632 MD-ESYEEKALTEKILRKLKL--ENFQLGRTKVFLRAG-QIGILDSRR 675 (1463)
Q Consensus 632 ~~-~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~-~~~~Le~~r 675 (1463)
.. ...|+++.|+.||+.+++ ++|++|+||||||+| +++.||..|
T Consensus 627 ~~~~~~~~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 627 WPTWPGDAKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred ccccCCCHHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 32 235789999999999876 489999999999998 688999876
No 12
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=6.7e-165 Score=1421.54 Aligned_cols=667 Identities=39% Similarity=0.651 Sum_probs=613.2
Q ss_pred CCCCcCccccCCCCCchhHHHHHHHHhhcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHH
Q 000489 59 EHGGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADAS 138 (1463)
Q Consensus 59 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~~~~~~~l~PHi~avA~~A 138 (1463)
...|++|++-|+.+.|++++.||+.||.++.||||+|+|||+||||+.++ ||+++.|++|+|..+.+.|||+||||+.|
T Consensus 6 ~~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~-IYg~~ti~kYkgre~yE~~PHlfAiad~a 84 (1001)
T KOG0164|consen 6 DEVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLN-IYGPETIEKYKGREFYERPPHLFAIADAA 84 (1001)
T ss_pred cccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcC-ccCHHHHHHhCCeeecccCchHHHhHHHH
Confidence 35799999999999999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHhhcccCCC-CCcHHHHHHhhccHHHhhccccccCCCCCCcccce
Q 000489 139 YRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGD-DRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKF 217 (1463)
Q Consensus 139 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~-~~~ve~~il~snpilEaFGnAkT~~N~nSSRfgk~ 217 (1463)
|+.|.+.++||||+|||||||||||++|+||+|+|.+.+.+..+ -..|.+.+|+|||||||||||||.|||||||||||
T Consensus 85 Yrslk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKY 164 (1001)
T KOG0164|consen 85 YRSLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKY 164 (1001)
T ss_pred HHHHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhcc
Confidence 99999999999999999999999999999999999997654322 24577899999999999999999999999999999
Q ss_pred EEEEEcCCCcccceeeeeecccccccccccCCCccceehhhcccCh--HHHhhccCC-CCCCcccccCCCccccCCCCcH
Q 000489 218 VEIQFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLD-HPSHFHYLNQSKVYELDGVSSA 294 (1463)
Q Consensus 218 ~~l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~-~~~~~~yl~~~~~~~~~~~~d~ 294 (1463)
+.|.||-+|..+|+.|.+|||||||||.|.+|||||||||||+.|+ .....|+|. ++..|+||++| |..+.+++|+
T Consensus 165 MDInFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~ 243 (1001)
T KOG0164|consen 165 MDINFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDA 243 (1001)
T ss_pred eeeeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccH
Confidence 9999999999999999999999999999999999999999999998 567889995 89999999998 8889999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCeeeecCCCCCcccccCcccHHHHHHHHHhcCCCHHHHHHHHhhce
Q 000489 295 EEYMKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRT 374 (1463)
Q Consensus 295 ~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~l~~~l~~r~ 374 (1463)
.+|..++.||.++||+++|+.++|+|+|||||||||+|.++. |++.+.+. .++..+|+||++.+++|+++||+|+
T Consensus 244 ~dfk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~e--d~~~~~~~---~~l~~~aell~v~~del~~aL~~Rt 318 (1001)
T KOG0164|consen 244 SDFKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNE--DSSGIVNG---AQLKYIAELLSVTGDELERALTSRT 318 (1001)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecC--cccccchh---HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998753 45555544 3799999999999999999999999
Q ss_pred ecccCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC-----CCCcceeeeecccCCccCCCCchhHHHh
Q 000489 375 IQTREGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQD-----MNSQMQIGVLDIYGFESFKHNSFEQFCI 449 (1463)
Q Consensus 375 ~~~~~e~~~~~l~~~~a~~~rd~lak~lY~~lF~wiv~~iN~~l~~~-----~~~~~~IgiLDi~GFE~f~~NsfeQlci 449 (1463)
+.+++|.+.++++++||..+||||||++|+|||+|||.+||.++... ......||||||||||+|+.||||||||
T Consensus 319 vaa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcI 398 (1001)
T KOG0164|consen 319 VAAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCI 398 (1001)
T ss_pred HHhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999642 2335899999999999999999999999
Q ss_pred hhhhhHHhhhhhHHHHHHhHHHHhhcCCCcccccccChHHHHHHhhhccCccccccccccchhhhhhcccCC-CCchhhH
Q 000489 450 NFANEKLQQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLS-SSKCPFV 528 (1463)
Q Consensus 450 NyaNE~Lq~~f~~~vf~~eq~~y~~E~i~~~~i~~~dn~~~l~lie~~~~Gil~lLd~~~~~~~~ee~~~p~-~~~~~f~ 528 (1463)
||+||||||.|.+-+++.|||||.+|||+|..|+|.+|.-+.||+|.+..||+++|| |+|.-|+ .||.+|+
T Consensus 399 NYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailD--------e~Cl~~G~vtD~tfL 470 (1001)
T KOG0164|consen 399 NYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILD--------EACLRPGTVTDETFL 470 (1001)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhh--------HHhcCCCccchHHHH
Confidence 999999999999999999999999999999999999999999999999899999999 9999886 5899999
Q ss_pred HHhhhhcc------------------------------------------------------------------cccc--
Q 000489 529 AGLFPVLS------------------------------------------------------------------EESS-- 540 (1463)
Q Consensus 529 ~kl~~~~~------------------------------------------------------------------~~~~-- 540 (1463)
++|.+.++ .+..
T Consensus 471 ~~l~~~~~~H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~ 550 (1001)
T KOG0164|consen 471 EKLNQKLKKHPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPD 550 (1001)
T ss_pred HHHHHHhhhCCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChh
Confidence 99865411 0000
Q ss_pred --CCCCccccHHHHHHHHHHHHHHHHcccCCeeEEEecCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCCccchh
Q 000489 541 --RSSYKFSSVASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYS 618 (1463)
Q Consensus 541 --~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~ 618 (1463)
....+.+|+|++||.|+..||+.|.+-+|+||||||||+.|.|+.||...|.+|.||.|+||.+|++|+||.+|.+|+
T Consensus 551 ~~~~tkRP~Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~ 630 (1001)
T KOG0164|consen 551 IAEVTKRPPTAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYE 630 (1001)
T ss_pred HHhhhcCCCcHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchH
Confidence 000145799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhhhhccc--chHHHHHHHHHHHHcccC-ccccccceeeeccc-ccccccchhhhhhhhHHHHHHHHHhcch
Q 000489 619 DFVDRFGLLALEFMDE--SYEEKALTEKILRKLKLE-NFQLGRTKVFLRAG-QIGILDSRRAEVLDSAARCIQHRWRTFI 694 (1463)
Q Consensus 619 ~F~~ry~~l~~~~~~~--~~~~~~~~~~il~~~~~~-~~~iGkTkVFlr~~-~~~~Le~~r~~~~~~aa~~IQ~~~R~~~ 694 (1463)
.|+.||+++++..++. ..++++.|..+++..+.. ++.+|+||||+|.. .+-.||..|.+.+-..++.||+.||||+
T Consensus 631 ~FL~RYKmi~~~TWPn~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~ 710 (1001)
T KOG0164|consen 631 RFLLRYKMICESTWPNWRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWL 710 (1001)
T ss_pred HHHHHHHhhCcccCCCCCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999876642 135689999999999874 89999999999986 5678999999999999999999999999
Q ss_pred hhhhHHhhhhhHHHHHHHhhccccccccccccchhhHHHHHHHHHHHHHHHHHHhh
Q 000489 695 AHRNFVSIRAAAFVLQAQCRGCLARKLYGVKRETAAAISLQKYVRRWLSRHAFLKL 750 (1463)
Q Consensus 695 ~Rk~~~~~r~a~i~iQ~~~Rg~laRk~~~~~r~~~aai~IQ~~~R~~~~Rk~y~~~ 750 (1463)
+|.+|++|+.+++.|+ |||.+. ...++..||+.+|+|..++.|.+-
T Consensus 711 ~R~ry~rmka~~~ii~-wyR~~K---------~ks~v~el~~~~rg~k~~r~ygk~ 756 (1001)
T KOG0164|consen 711 ARQRYRRMKASATIIR-WYRRYK---------LKSYVQELQRRFRGAKQMRDYGKS 756 (1001)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHH---------HHHHHHHHHHHHHhhhhccccCCC
Confidence 9999999999999999 777332 235678899999999999998653
No 13
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=5.6e-164 Score=1528.83 Aligned_cols=596 Identities=38% Similarity=0.674 Sum_probs=553.9
Q ss_pred CcCccccCCCCCchhHHHHHHHHhhcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHHH
Q 000489 62 GVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRA 141 (1463)
Q Consensus 62 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~~~~~~~l~PHi~avA~~Ay~~ 141 (1463)
++|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|++++++.|.++..+++|||||+||+.||+.
T Consensus 1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (653)
T cd01379 1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLG-LYTTQHSRLYTGQKRSSNPPHIFAIADAAYQS 79 (653)
T ss_pred CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHhhcccCCCCCcHHHHHHhhccHHHhhccccccCCCCCCcccceEEEE
Q 000489 142 MISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQ 221 (1463)
Q Consensus 142 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpilEaFGnAkT~~N~nSSRfgk~~~l~ 221 (1463)
|...++||||||||||||||||++|++|+||+.+|+.. ..+|+++|+++||||||||||||+|||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~ 156 (653)
T cd01379 80 LVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKAN---NRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMK 156 (653)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCC---CccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999986532 357999999999999999999999999999999999999
Q ss_pred EcCCCcccceeeeeecccccccccccCCCccceehhhcccCh--HH-HhhccCCCCCCcccccCCCccccCCCC----cH
Q 000489 222 FDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RD-AEKYKLDHPSHFHYLNQSKVYELDGVS----SA 294 (1463)
Q Consensus 222 f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~-~~~~~l~~~~~~~yl~~~~~~~~~~~~----d~ 294 (1463)
|+.+|.|+||+|.+|||||||||+|++||||||||||||+|. ++ .+.|+|.++..|+||++++|..+++++ |+
T Consensus 157 f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~ 236 (653)
T cd01379 157 FTRSGAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYK 236 (653)
T ss_pred ECCCCcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHH
Confidence 999999999999999999999999999999999999999997 33 367999999999999999987777775 46
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCeeeecCCC---CCcccccCcccHHHHHHHHHhcCCCHHHHHHHHh
Q 000489 295 EEYMKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKE---HDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLC 371 (1463)
Q Consensus 295 ~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhlGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~lLgv~~~~l~~~l~ 371 (1463)
++|..|+.||+.|||+++++.+||+|||||||||||+|.+... .+.+.+.+ ..++..+|+|||||+++|.++||
T Consensus 237 ~~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~---~~~l~~~A~LLgv~~~~L~~~L~ 313 (653)
T cd01379 237 DQFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSN---VAALENAASLLCIRSDELQEALT 313 (653)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhc
Confidence 8899999999999999999999999999999999999986432 12333333 34799999999999999999999
Q ss_pred hceecccCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC-----CcceeeeecccCCccCCCCchhH
Q 000489 372 TRTIQTREGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMN-----SQMQIGVLDIYGFESFKHNSFEQ 446 (1463)
Q Consensus 372 ~r~~~~~~e~~~~~l~~~~a~~~rd~lak~lY~~lF~wiv~~iN~~l~~~~~-----~~~~IgiLDi~GFE~f~~NsfeQ 446 (1463)
++++.++++.+++|+++++|..+||+|||+||++||+|||.+||.+|..+.. ...+||||||||||+|+.|||||
T Consensus 314 ~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQ 393 (653)
T cd01379 314 SHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQ 393 (653)
T ss_pred ccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999986432 35799999999999999999999
Q ss_pred HHhhhhhhHHhhhhhHHHHHHhHHHHhhcCCCcccccccChHHHHHHhhhccCccccccccccchhhhhhcccCCCCchh
Q 000489 447 FCINFANEKLQQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCP 526 (1463)
Q Consensus 447 lciNyaNE~Lq~~f~~~vf~~eq~~y~~E~i~~~~i~~~dn~~~l~lie~~~~Gil~lLd~~~~~~~~ee~~~p~~~~~~ 526 (1463)
||||||||||||+|+++||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|| |||++|+|||++
T Consensus 394 LcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLd--------ee~~~~~~td~~ 465 (653)
T cd01379 394 LCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLD--------EESRFPQATDQT 465 (653)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHH--------HHhcCCCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred hHHHhhhhccc----------------------------------cc--------cCCCCccccHHHHHHHHHHHHHHHH
Q 000489 527 FVAGLFPVLSE----------------------------------ES--------SRSSYKFSSVASRFKQQLQALMETL 564 (1463)
Q Consensus 527 f~~kl~~~~~~----------------------------------~~--------~~~~~~~~tv~~~f~~~l~~L~~~l 564 (1463)
|++|++.++.. +. -++| .||+++||.||++||++|
T Consensus 466 ~~~kl~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S---~tv~~~fr~~l~~L~~~l 542 (653)
T cd01379 466 LVEKFEDNLKSKFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS---QTVASYFRYSLMDLLSKM 542 (653)
T ss_pred HHHHHHHhcCCCCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC---cHHHHHHHHHHHHHHHHH
Confidence 99999876320 00 0111 689999999999999999
Q ss_pred cccCCeeEEEecCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCCccchhhHHHHHhhhhhhhcccchHHHHHHHH
Q 000489 565 NSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLLALEFMDESYEEKALTEK 644 (1463)
Q Consensus 565 ~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~ 644 (1463)
++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++.......+.++.|+.
T Consensus 543 ~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~~~~~~~~~~~~~~~~ 622 (653)
T cd01379 543 VVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAYRFEEEPVSSPESCAL 622 (653)
T ss_pred hccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhccccccccCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987654434567899999
Q ss_pred HHHHcccCccccccceeeecccccccccchh
Q 000489 645 ILRKLKLENFQLGRTKVFLRAGQIGILDSRR 675 (1463)
Q Consensus 645 il~~~~~~~~~iGkTkVFlr~~~~~~Le~~r 675 (1463)
||..++.++|++||||||||+++++.||++|
T Consensus 623 il~~~~~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 623 ILEKAKLDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred HHHhCCCCCEEecceEEEEecCHHHHHHhcC
Confidence 9999999999999999999999999999875
No 14
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=5.6e-164 Score=1537.18 Aligned_cols=598 Identities=40% Similarity=0.701 Sum_probs=552.7
Q ss_pred CCcCccccCCCCCchhHHHHHHHHhhcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHH
Q 000489 61 GGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYR 140 (1463)
Q Consensus 61 ~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~~~~~~~l~PHi~avA~~Ay~ 140 (1463)
+|+|||+.|++||||+|||+|+.||..+.||||+|+||||||||+.+| +|++++++.|+++..+++||||||||+.||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~ 79 (677)
T cd01387 1 DGVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFP-IYGPEQVQQYAGRALGENPPHLFAIANLAFA 79 (677)
T ss_pred CCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHhhcccCCCCCcHHHHHHhhccHHHhhccccccCCCCCCcccceEEE
Q 000489 141 AMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEI 220 (1463)
Q Consensus 141 ~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpilEaFGnAkT~~N~nSSRfgk~~~l 220 (1463)
.|...++||||||||||||||||++|++|+||+.+++.. ...|+++|+++||||||||||||++||||||||||++|
T Consensus 80 ~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l 156 (677)
T cd01387 80 KMLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGG---SAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEI 156 (677)
T ss_pred HHHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCC---cchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEE
Confidence 999999999999999999999999999999999987532 34699999999999999999999999999999999999
Q ss_pred EEcCCCcccceeeeeecccccccccccCCCccceehhhcccCh--HHHhhccCCCCCCcccccCCCccccCCCCcHHHHH
Q 000489 221 QFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEEYM 298 (1463)
Q Consensus 221 ~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f~ 298 (1463)
+|+ +|.|+||+|.+|||||||||+|++||||||||||||+|. ++++.|+|.++.+|+||++++|..+++++|+++|.
T Consensus 157 ~f~-~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~ 235 (677)
T cd01387 157 FLE-GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFR 235 (677)
T ss_pred Eec-CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHH
Confidence 995 799999999999999999999999999999999999997 77889999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCeeeecCCC--CCcccccCcccHHHHHHHHHhcCCCHHHHHHHHhhceec
Q 000489 299 KTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKE--HDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQ 376 (1463)
Q Consensus 299 ~~~~al~~lg~~~~~~~~i~~ilaaiLhlGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~lLgv~~~~l~~~l~~r~~~ 376 (1463)
.|+.||+.|||+++++.+||+|||||||||||+|..... .+.+.+.++ ..++.||+|||||+++|.++||++++.
T Consensus 236 ~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~lt~~~~~ 312 (677)
T cd01387 236 RLLAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVSA---REIQAVAELLQISPEGLQKAITFKVTE 312 (677)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCCH---HHHHHHHHHhCCCHHHHHHHhccCeEE
Confidence 999999999999999999999999999999999986432 122333333 379999999999999999999999999
Q ss_pred ccCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcceeeeecccCCccCCCCchhHHHhhhhhhHH
Q 000489 377 TREGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMNSQMQIGVLDIYGFESFKHNSFEQFCINFANEKL 456 (1463)
Q Consensus 377 ~~~e~~~~~l~~~~a~~~rd~lak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNE~L 456 (1463)
+++|.+.+|+++++|.++||+|||+||++||+|||.+||.+|... ....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkL 391 (677)
T cd01387 313 TRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT-QDTLSIAILDIYGFEDLSFNSFEQLCINYANENL 391 (677)
T ss_pred eCCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEecCccccCCCCCHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999864 4567999999999999999999999999999999
Q ss_pred hhhhhHHHHHHhHHHHhhcCCCcccccccChHHHHHHhhhccCccccccccccchhhhhhcccCCCCchhhHHHhhhhcc
Q 000489 457 QQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPVLS 536 (1463)
Q Consensus 457 q~~f~~~vf~~eq~~y~~E~i~~~~i~~~dn~~~l~lie~~~~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~~~~~ 536 (1463)
|++||+|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||+||| |||++|++||++|++|+...+.
T Consensus 392 Q~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLd--------ee~~~p~~td~~~~~kl~~~~~ 463 (677)
T cd01387 392 QYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILD--------DQCCFPQATDHTFLQKCHYHHG 463 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHH--------HHhcCCCCchHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999875421
Q ss_pred -----------------------------------------------------------cc-----c----cC-----CC
Q 000489 537 -----------------------------------------------------------EE-----S----SR-----SS 543 (1463)
Q Consensus 537 -----------------------------------------------------------~~-----~----~~-----~~ 543 (1463)
.. . .+ ..
T Consensus 464 ~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~s~~~~~ 543 (677)
T cd01387 464 ANPLYSKPKMPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRLGKSSSGTRL 543 (677)
T ss_pred CCccccCCCCCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccccCCCccccc
Confidence 00 0 00 01
Q ss_pred CccccHHHHHHHHHHHHHHHHcccCCeeEEEecCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCCccchhhHHHH
Q 000489 544 YKFSSVASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDR 623 (1463)
Q Consensus 544 ~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~r 623 (1463)
.+.+||+++|+.||+.||++|++|+||||||||||+.|+|+.||.+.|++||||+||||+|||+|+|||+|++|.+|+.|
T Consensus 544 ~~~~tv~~~f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~r 623 (677)
T cd01387 544 YKAHTVAAKFQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDR 623 (677)
T ss_pred cCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHH
Confidence 13469999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhcccchHHHHHHHHHHHHccc--Cccccccceeeecccccccccchh
Q 000489 624 FGLLALEFMDESYEEKALTEKILRKLKL--ENFQLGRTKVFLRAGQIGILDSRR 675 (1463)
Q Consensus 624 y~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 675 (1463)
|++|++.......+.+..+..++..+++ ++|++|+||||||++++..||..|
T Consensus 624 Y~~L~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 624 YRCLVALKLARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred HHHhCcccccCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 9999987543322334555788888765 479999999999999999999876
No 15
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=8.9e-164 Score=1538.65 Aligned_cols=600 Identities=39% Similarity=0.663 Sum_probs=555.8
Q ss_pred CCCcCccccCCCCCchhHHHHHHHHhhcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhhCCC-CCCCChhHHHHHHHH
Q 000489 60 HGGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAP-FGELSPHVFAVADAS 138 (1463)
Q Consensus 60 ~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~~~~-~~~l~PHi~avA~~A 138 (1463)
..++|||+.|++||||+|||+|+.||.+++||||+|+||||||||+++| +|++++++.|+++. .+++|||||+||+.|
T Consensus 6 ~~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~A 84 (692)
T cd01385 6 QREYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLP-IYNPKYVRLYENQQRLGKLPPHIFAIADVA 84 (692)
T ss_pred cCCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCC-CCCHHHHHHHhcCCCcCCCCCCHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999998 99999999999887 789999999999999
Q ss_pred HHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHhhcccCCCCCcHHHHHHhhccHHHhhccccccCCCCCCcccceE
Q 000489 139 YRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFV 218 (1463)
Q Consensus 139 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpilEaFGnAkT~~N~nSSRfgk~~ 218 (1463)
|+.|..+++||||||||||||||||++|++|+||+.+++... ....|+++|+++||||||||||||++|+||||||||+
T Consensus 85 y~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~~-~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i 163 (692)
T cd01385 85 YYNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKGY-AGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFI 163 (692)
T ss_pred HHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCc-cCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeE
Confidence 999999999999999999999999999999999999975432 3457999999999999999999999999999999999
Q ss_pred EEEEcCCCcccceeeeeecccccccccccCCCccceehhhcccCh--HHHhhccCCCCCCcccccCCCccccCCCCcHHH
Q 000489 219 EIQFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEE 296 (1463)
Q Consensus 219 ~l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~ 296 (1463)
+|+|+.+|.|+||+|.+|||||||||+|++||||||||||||+|+ ++++++.|.++.+|+||++++|...+++||+.+
T Consensus 164 ~l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~ 243 (692)
T cd01385 164 QVNYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHE 243 (692)
T ss_pred EEEECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHH
Confidence 999999999999999999999999999999999999999999997 778888898888999999999887789999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCeeeecCCC---CCcccccCcccHHHHHHHHHhcCCCHHHHHHHHhhc
Q 000489 297 YMKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKE---HDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTR 373 (1463)
Q Consensus 297 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhlGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~lLgv~~~~l~~~l~~r 373 (1463)
|..++.||+.|||+++++.+||+|||||||||||+|.+..+ .+++.+.+. ..+..||.||||++++|.++||++
T Consensus 244 f~~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~l~~~ 320 (692)
T cd01385 244 FERLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGNP---EVVDLLSQLLKVKRETLMEALTKK 320 (692)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCCH---HHHHHHHHHhCCCHHHHHHHhccC
Confidence 99999999999999999999999999999999999986432 233444433 479999999999999999999999
Q ss_pred eecccCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC---CCcceeeeecccCCccCCC-CchhHHHh
Q 000489 374 TIQTREGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDM---NSQMQIGVLDIYGFESFKH-NSFEQFCI 449 (1463)
Q Consensus 374 ~~~~~~e~~~~~l~~~~a~~~rd~lak~lY~~lF~wiv~~iN~~l~~~~---~~~~~IgiLDi~GFE~f~~-NsfeQlci 449 (1463)
++.+++|.+++|+++++|..+||+|||+||++||+|||++||.+|.+.. .+..+||||||||||+|+. ||||||||
T Consensus 321 ~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcI 400 (692)
T cd01385 321 RTVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCI 400 (692)
T ss_pred eEEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhh
Confidence 9999999999999999999999999999999999999999999998643 3467999999999999999 99999999
Q ss_pred hhhhhHHhhhhhHHHHHHhHHHHhhcCCCcccccccChHHHHHHhhhccCccccccccccchhhhhhcccCCCCchhhHH
Q 000489 450 NFANEKLQQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVA 529 (1463)
Q Consensus 450 NyaNE~Lq~~f~~~vf~~eq~~y~~E~i~~~~i~~~dn~~~l~lie~~~~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~ 529 (1463)
||||||||++||+|||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|| |||++|++||++|++
T Consensus 401 NyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLd--------ee~~~p~~td~~~l~ 472 (692)
T cd01385 401 NYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLD--------EESNFPHATSQTLLA 472 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhH--------HHhcCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred Hhhhhcc------------------------------------------------------------ccc-c-------C
Q 000489 530 GLFPVLS------------------------------------------------------------EES-S-------R 541 (1463)
Q Consensus 530 kl~~~~~------------------------------------------------------------~~~-~-------~ 541 (1463)
|+++.+. ... . +
T Consensus 473 kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~ 552 (692)
T cd01385 473 KFNQQHKDNKYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRWAVLR 552 (692)
T ss_pred HHHHHhCCCCCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCccccccccccc
Confidence 9987521 000 0 0
Q ss_pred ---CCCccccHHHHHHHHHHHHHHHHcccCCeeEEEecCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCCccchh
Q 000489 542 ---SSYKFSSVASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYS 618 (1463)
Q Consensus 542 ---~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~ 618 (1463)
.+.+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.
T Consensus 553 ~~~~~~~~~tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~ 632 (692)
T cd01385 553 AAFRAMAAPSVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQ 632 (692)
T ss_pred ccccCccCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHH
Confidence 01123699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhhhhcccchHHHHHHHHHHHHcccC--ccccccceeeecccccccccchh
Q 000489 619 DFVDRFGLLALEFMDESYEEKALTEKILRKLKLE--NFQLGRTKVFLRAGQIGILDSRR 675 (1463)
Q Consensus 619 ~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r 675 (1463)
+|+.||++|+|.... +.++.|+.||+.++++ +|++|+||||||+++++.||...
T Consensus 633 ~F~~rY~~L~~~~~~---~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~ 688 (692)
T cd01385 633 DFTQQYRILLPKGAQ---SCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETL 688 (692)
T ss_pred HHHHHHHHhCccccc---chHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHH
Confidence 999999999986432 3456799999998875 89999999999999999998753
No 16
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=6.9e-164 Score=1544.90 Aligned_cols=600 Identities=40% Similarity=0.680 Sum_probs=554.9
Q ss_pred CCCcCccccCCCCCchhHHHHHHHHhhcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHH
Q 000489 60 HGGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASY 139 (1463)
Q Consensus 60 ~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~~~~~~~l~PHi~avA~~Ay 139 (1463)
+.++|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+|++|++++++.|+++..+++||||||||+.||
T Consensus 3 ~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay 82 (717)
T cd01382 3 KKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAY 82 (717)
T ss_pred CCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHhhcccCCCCCcHHHHHHhhccHHHhhccccccCCCCCCcccceEE
Q 000489 140 RAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVE 219 (1463)
Q Consensus 140 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpilEaFGnAkT~~N~nSSRfgk~~~ 219 (1463)
++|...++||||||||||||||||++|++|+|||.+++++ .+|+++|+++||||||||||||++||||||||||++
T Consensus 83 ~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~ 158 (717)
T cd01382 83 RDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSG----QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVE 158 (717)
T ss_pred HHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCC----ccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEE
Confidence 9999999999999999999999999999999999986542 579999999999999999999999999999999999
Q ss_pred EEEcCCCcccceeeeeecccccccccccCCCccceehhhcccCh--HHHhhccCCCCCCcccccCCC-------------
Q 000489 220 IQFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSK------------- 284 (1463)
Q Consensus 220 l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~------------- 284 (1463)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+|+ ++++.|+|.++.+|+||+++.
T Consensus 159 l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~ 238 (717)
T cd01382 159 IHFNEKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQI 238 (717)
T ss_pred EEECCCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCcccccccccccccc
Confidence 99999999999999999999999999999999999999999997 778899999999999999753
Q ss_pred -------------ccccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCeeeecCCCC-CcccccCcccHH
Q 000489 285 -------------VYELDGVSSAEEYMKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEH-DSSVIKDQKSSF 350 (1463)
Q Consensus 285 -------------~~~~~~~~d~~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhlGni~f~~~~~~-~~~~~~~~~~~~ 350 (1463)
|...+++||+++|.+|+.||+.|||+++++.+||+|||||||||||+|.+.+.. +.+.+.+ .+..
T Consensus 239 ~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~-~~~~ 317 (717)
T cd01382 239 LQNRKSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKN-QSEQ 317 (717)
T ss_pred cccccccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecC-CCHH
Confidence 335678999999999999999999999999999999999999999999874322 2222322 2335
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhceec-----ccCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCc
Q 000489 351 HLQMAADLFMCDVNLLLATLCTRTIQ-----TREGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMNSQ 425 (1463)
Q Consensus 351 ~l~~~a~lLgv~~~~l~~~l~~r~~~-----~~~e~~~~~l~~~~a~~~rd~lak~lY~~lF~wiv~~iN~~l~~~~~~~ 425 (1463)
++..||.||||++++|.++||+|++. ++++.+.+|+++++|..+||+|||+||++||+|||.+||.++..+. +.
T Consensus 318 ~l~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~-~~ 396 (717)
T cd01382 318 SLEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFET-SS 396 (717)
T ss_pred HHHHHHHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CC
Confidence 79999999999999999999999998 6789999999999999999999999999999999999999997653 56
Q ss_pred ceeeeecccCCccCCCCchhHHHhhhhhhHHhhhhhHHHHHHhHHHHhhcCCCcccccccChHHHHHHhhhccCcccccc
Q 000489 426 MQIGVLDIYGFESFKHNSFEQFCINFANEKLQQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFL 505 (1463)
Q Consensus 426 ~~IgiLDi~GFE~f~~NsfeQlciNyaNE~Lq~~f~~~vf~~eq~~y~~E~i~~~~i~~~dn~~~l~lie~~~~Gil~lL 505 (1463)
.+||||||||||+|+.||||||||||||||||++|+++||+.||++|.+|||+|++|+|.||++|||||+++|.|||++|
T Consensus 397 ~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lL 476 (717)
T cd01382 397 NFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDIL 476 (717)
T ss_pred cEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhcccCCCCchhhHHHhhhhcc-------------------------------------------------
Q 000489 506 DKNRDYVVVEHCNLLSSSKCPFVAGLFPVLS------------------------------------------------- 536 (1463)
Q Consensus 506 d~~~~~~~~ee~~~p~~~~~~f~~kl~~~~~------------------------------------------------- 536 (1463)
| |||++|++||++|++||++.+.
T Consensus 477 D--------ee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l 548 (717)
T cd01382 477 D--------EENRLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDAL 548 (717)
T ss_pred H--------HHhcCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccc
Confidence 9 9999999999999999874310
Q ss_pred ---------------------c-cc------cCCCCccccHHHHHHHHHHHHHHHHcccCCeeEEEecCCCCCCCCCCCh
Q 000489 537 ---------------------E-ES------SRSSYKFSSVASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFEN 588 (1463)
Q Consensus 537 ---------------------~-~~------~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~ 588 (1463)
. .. .++..++.||+++||.||+.||++|++|+||||||||||+.++|+.||.
T Consensus 549 ~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~ 628 (717)
T cd01382 549 HMSLESLICESKDKFLRSLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEG 628 (717)
T ss_pred cHHHHHHHHhCchHHHHHHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCCh
Confidence 0 00 0011245799999999999999999999999999999999999999999
Q ss_pred hHHHHHhhccChhhHHHHHhhcCCCccchhhHHHHHhhhhhhhcccchHHHHHHHHHHHHcccC--ccccccceeeeccc
Q 000489 589 PSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLLALEFMDESYEEKALTEKILRKLKLE--NFQLGRTKVFLRAG 666 (1463)
Q Consensus 589 ~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~ 666 (1463)
..|++||||+||||+|||+|+|||+|++|.+|+.||+.|+|.... ..|++..|+.||+.++++ +|++|+||||||+|
T Consensus 629 ~~V~~QLr~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~-~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g 707 (717)
T cd01382 629 AQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLV-RLDPRLFCKALFKALGLNENDYKFGLTKVFFRPG 707 (717)
T ss_pred HHHHHHHHhcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccC-CCCHHHHHHHHHHHcCCCcccEEecceeEEeccc
Confidence 999999999999999999999999999999999999999986543 347899999999998864 89999999999999
Q ss_pred ccccccch
Q 000489 667 QIGILDSR 674 (1463)
Q Consensus 667 ~~~~Le~~ 674 (1463)
+++.||++
T Consensus 708 ~~~~le~~ 715 (717)
T cd01382 708 KFAEFDQI 715 (717)
T ss_pred HHHHHHHH
Confidence 99999975
No 17
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=4.3e-160 Score=1512.71 Aligned_cols=605 Identities=51% Similarity=0.848 Sum_probs=566.1
Q ss_pred CCCCcCccccCCCCCchhHHHHHHHHhhcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHH
Q 000489 59 EHGGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADAS 138 (1463)
Q Consensus 59 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~~~~~~~l~PHi~avA~~A 138 (1463)
...+++||+.|++|||++||++|+.||..++||||+|++|||||||+++| +|++++++.|+++..+++|||||+||++|
T Consensus 4 ~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~A 82 (677)
T smart00242 4 KFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLP-IYTDEVIKKYRGKSRGELPPHVFAIADNA 82 (677)
T ss_pred ccCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCC-CCCHHHHHHccCCCCCCCCCCHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHhhcccCCCCCcHHHHHHhhccHHHhhccccccCCCCCCcccceE
Q 000489 139 YRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFV 218 (1463)
Q Consensus 139 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpilEaFGnAkT~~N~nSSRfgk~~ 218 (1463)
|+.|..+++||||||||||||||||++|++|+||+.++++.. ...+|+++|+++||||||||||||++||||||||||+
T Consensus 83 y~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~-~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~ 161 (677)
T smart00242 83 YRNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNT-SVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFI 161 (677)
T ss_pred HHHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCccchheeE
Confidence 999999999999999999999999999999999999986532 3457999999999999999999999999999999999
Q ss_pred EEEEcCCCcccceeeeeecccccccccccCCCccceehhhcccCh--HHHhhccCCCCCCcccccCCCccccCCCCcHHH
Q 000489 219 EIQFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEE 296 (1463)
Q Consensus 219 ~l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~ 296 (1463)
+|+||.+|.|+||+|.+|||||||||.|++||||||||||||+|. +++++|+|.++.+|+||++++|..++++||+++
T Consensus 162 ~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~ 241 (677)
T smart00242 162 EIHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAEE 241 (677)
T ss_pred EEEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHHH
Confidence 999999999999999999999999999999999999999999996 888999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCeeeecCCCCCcc-cccCcccHHHHHHHHHhcCCCHHHHHHHHhhcee
Q 000489 297 YMKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSS-VIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTI 375 (1463)
Q Consensus 297 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhlGni~f~~~~~~~~~-~~~~~~~~~~l~~~a~lLgv~~~~l~~~l~~r~~ 375 (1463)
|.+++.||+.|||+++++.+||+|||||||||||+|.+..+.++. .+.+ ...++.||.||||++++|.++|+++++
T Consensus 242 f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~ 318 (677)
T smart00242 242 FKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKD---KEELENAAELLGVDPEELEKALTKRKI 318 (677)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhcccEE
Confidence 999999999999999999999999999999999999875433221 2333 347999999999999999999999999
Q ss_pred cccCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcceeeeecccCCccCCCCchhHHHhhhhhhH
Q 000489 376 QTREGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMNSQMQIGVLDIYGFESFKHNSFEQFCINFANEK 455 (1463)
Q Consensus 376 ~~~~e~~~~~l~~~~a~~~rd~lak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNE~ 455 (1463)
.+++|.+++++++++|..+||+|||+||++||+|||.+||.+|..+.....+||||||||||+|+.||||||||||||||
T Consensus 319 ~~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEk 398 (677)
T smart00242 319 KTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIFEVNSFEQLCINYANEK 398 (677)
T ss_pred EeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecccccccccCCHHHHHhHhhHHH
Confidence 99999999999999999999999999999999999999999998876778899999999999999999999999999999
Q ss_pred HhhhhhHHHHHHhHHHHhhcCCCcccccccChHHHHHHhhhccCccccccccccchhhhhhcccCCCCchhhHHHhhhhc
Q 000489 456 LQQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPVL 535 (1463)
Q Consensus 456 Lq~~f~~~vf~~eq~~y~~E~i~~~~i~~~dn~~~l~lie~~~~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~~~~ 535 (1463)
||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|| |||++|++||++|++|+++.+
T Consensus 399 Lq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLd--------ee~~~~~~td~~~~~kl~~~~ 470 (677)
T smart00242 399 LQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLD--------EECRFPKATDQTFLEKLNQTH 470 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHH--------HHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999 999999999999999998753
Q ss_pred c-------------------------------------------------------------ccc--cCCCCccccHHHH
Q 000489 536 S-------------------------------------------------------------EES--SRSSYKFSSVASR 552 (1463)
Q Consensus 536 ~-------------------------------------------------------------~~~--~~~~~~~~tv~~~ 552 (1463)
. ... ..+..+..||+++
T Consensus 471 ~~~~~~~~~~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~tv~~~ 550 (677)
T smart00242 471 EKHPHFSKPRKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNAGSKKRFRTVGSQ 550 (677)
T ss_pred cCCCCccCCCCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccccccCCCCcHHHH
Confidence 1 000 0112256799999
Q ss_pred HHHHHHHHHHHHcccCCeeEEEecCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCCccchhhHHHHHhhhhhhhc
Q 000489 553 FKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLLALEFM 632 (1463)
Q Consensus 553 f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~ 632 (1463)
|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.+|+.||++|++...
T Consensus 551 fk~~L~~L~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~ 630 (677)
T smart00242 551 FKESLNKLMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPDTW 630 (677)
T ss_pred HHHHHHHHHHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred cc-chHHHHHHHHHHHHccc--Cccccccceeeecccccccccchhh
Q 000489 633 DE-SYEEKALTEKILRKLKL--ENFQLGRTKVFLRAGQIGILDSRRA 676 (1463)
Q Consensus 633 ~~-~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r~ 676 (1463)
.. ..|+++.|+.||+.+++ ++|++|+||||||++++..||+.|.
T Consensus 631 ~~~~~~~k~~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 631 PPWGGDAKEACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred cccCCCHHHHHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 32 23689999999999865 5899999999999999999998874
No 18
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=4.7e-159 Score=1501.54 Aligned_cols=597 Identities=31% Similarity=0.493 Sum_probs=532.3
Q ss_pred cCccccCCCCCchhHHHHHHHHhhcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHHHH
Q 000489 63 VDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRAM 142 (1463)
Q Consensus 63 ~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~~~~~~~l~PHi~avA~~Ay~~m 142 (1463)
+|||+.|++||||+|||+|+.||..+.||||+|+||||||||+.+| ||++++++.|+++..+++||||||||+.||+.|
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~-iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m 80 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLA-LYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRAL 80 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCC-CCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred HhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHhhcccCCCCCcHHHHHHhhccHHHhhccccccCCCCCCcccceEEEEE
Q 000489 143 ISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQF 222 (1463)
Q Consensus 143 ~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpilEaFGnAkT~~N~nSSRfgk~~~l~f 222 (1463)
..+++||||||||||||||||+||+||+|||.+++..+ ...++ ++|+++||||||||||||+|||||||||||++|+|
T Consensus 81 ~~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~-~~~~~-e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F 158 (767)
T cd01386 81 LETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVD-GRVSV-EKVRALFTILEAFGNVSTALNGNATRFTQILSLDF 158 (767)
T ss_pred HHcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCC-cccHH-HHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEE
Confidence 99999999999999999999999999999999976432 12234 57999999999999999999999999999999999
Q ss_pred cCCCcccceeeeeecccccccccccCCCccceehhhcccCh--HHHhhccCCCCCCcccccCCC-ccccCCCCcHHHHHH
Q 000489 223 DTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSK-VYELDGVSSAEEYMK 299 (1463)
Q Consensus 223 ~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~-~~~~~~~~d~~~f~~ 299 (1463)
|.+|.|+||+|.+|||||||||+|++||||||||||||+|+ +++++|+|.++..+.+.+.++ +...++++|+++|..
T Consensus 159 ~~~g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~ 238 (767)
T cd01386 159 DQTGQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSR 238 (767)
T ss_pred CCCCcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHH
Confidence 99999999999999999999999999999999999999997 778899998765443333322 334678999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcCeeeecCCCCCcccccCcccHHHHHHHHHhcCCCHHHHHHHHhhceecccC
Q 000489 300 TKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQTRE 379 (1463)
Q Consensus 300 ~~~al~~lg~~~~~~~~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~l~~~l~~r~~~~~~ 379 (1463)
|+.||+.|||+++++.+||+|||||||||||+|.+.. +.+.+.+. ..++.+|.||||++++|.++|+++++..+.
T Consensus 239 ~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~~--~~~~~~~~---~~~~~vA~LLgv~~~~L~~al~~~~~~~~~ 313 (767)
T cd01386 239 LQQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATKVA--GRKQFARP---EWAQKAAELLGCPLEELSSATFKHTLRGGI 313 (767)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecC--CccccCCH---HHHHHHHHHhCCCHHHHHHHhcccEEeecc
Confidence 9999999999999999999999999999999998622 22233332 369999999999999999999988765543
Q ss_pred c-------------eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcceeeeecccCCccCCC-----
Q 000489 380 G-------------SIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMNSQMQIGVLDIYGFESFKH----- 441 (1463)
Q Consensus 380 e-------------~~~~~l~~~~a~~~rd~lak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~----- 441 (1463)
+ .+..++++.+|.++||||||+||++||+|||.+||.+|..+..+..+||||||||||+|+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~n~~~~ 393 (767)
T cd01386 314 NQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKDR 393 (767)
T ss_pred eeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecccccccccccccC
Confidence 2 3345678999999999999999999999999999999988766678999999999999984
Q ss_pred -CchhHHHhhhhhhHHhhhhhHHHHHHhHHHHhhcCCCcccccc-cChHHHHHHhhhcc--------------Ccccccc
Q 000489 442 -NSFEQFCINFANEKLQQHFNEHVFKMEQEEYRREEINWSYIEF-IDNQDVLDLIEKVT--------------YQTNTFL 505 (1463)
Q Consensus 442 -NsfeQlciNyaNE~Lq~~f~~~vf~~eq~~y~~E~i~~~~i~~-~dn~~~l~lie~~~--------------~Gil~lL 505 (1463)
|||||||||||||||||+||++||+.||+||.+|||+|+++++ .||++|||||+++| .|||++|
T Consensus 394 ~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lL 473 (767)
T cd01386 394 AATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLL 473 (767)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhh
Confidence 8999999999999999999999999999999999999997665 79999999999865 5999999
Q ss_pred ccccchhhhhhcccCCCCchhhHHHhhhhcc-------------------------------------------------
Q 000489 506 DKNRDYVVVEHCNLLSSSKCPFVAGLFPVLS------------------------------------------------- 536 (1463)
Q Consensus 506 d~~~~~~~~ee~~~p~~~~~~f~~kl~~~~~------------------------------------------------- 536 (1463)
| |||++|++||++|++||++.|.
T Consensus 474 D--------Eec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~ 545 (767)
T cd01386 474 D--------EEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAA 545 (767)
T ss_pred h--------HhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCCh
Confidence 9 9999999999999999875311
Q ss_pred -------------------ccc----c---C---------------C------------CCccccHHHHHHHHHHHHHHH
Q 000489 537 -------------------EES----S---R---------------S------------SYKFSSVASRFKQQLQALMET 563 (1463)
Q Consensus 537 -------------------~~~----~---~---------------~------------~~~~~tv~~~f~~~l~~L~~~ 563 (1463)
... . . . ..+..||+++||.||+.||++
T Consensus 546 ~~~~~ll~~S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~ 625 (767)
T cd01386 546 LNAPQLLQDSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDT 625 (767)
T ss_pred HHHHHHHHhCCcHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHH
Confidence 000 0 0 0 002247899999999999999
Q ss_pred HcccCCeeEEEecCCCCCC----------------------CCCCChhHHHHHhhccChhhHHHHHhhcCCCccchhhHH
Q 000489 564 LNSTEPHYIRCVKPNSLNR----------------------PQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFV 621 (1463)
Q Consensus 564 l~~t~~h~irCIkPN~~~~----------------------~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~ 621 (1463)
|++|+||||||||||+.|+ |+.||.+.|++||||+||||+|||+|+|||+|++|.+|+
T Consensus 626 L~~t~phfIRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~ 705 (767)
T cd01386 626 LRRSGLHFVHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFV 705 (767)
T ss_pred HhccCCeeEEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHH
Confidence 9999999999999999874 789999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhcc------cchHHHHHHHHHHHHcccC--ccccccceeeecccccccccchh
Q 000489 622 DRFGLLALEFMD------ESYEEKALTEKILRKLKLE--NFQLGRTKVFLRAGQIGILDSRR 675 (1463)
Q Consensus 622 ~ry~~l~~~~~~------~~~~~~~~~~~il~~~~~~--~~~iGkTkVFlr~~~~~~Le~~r 675 (1463)
.||++|++...+ ...|++++|+.||+.++++ +|+||+||||||+++++.||+.|
T Consensus 706 ~RY~~L~~~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 706 RRFGLLAEGLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred HHHHhhChhhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 999999876432 1357899999999998764 79999999999999999999876
No 19
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=8.8e-159 Score=1506.14 Aligned_cols=599 Identities=48% Similarity=0.795 Sum_probs=558.6
Q ss_pred CcCccccCCCCCchhHHHHHHHHhhcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHHH
Q 000489 62 GVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRA 141 (1463)
Q Consensus 62 ~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~~~~~~~l~PHi~avA~~Ay~~ 141 (1463)
|++||+.|++|||++|||+|+.||.++.||||+|++|||||||+.+| +|++++++.|+++..+++||||||||+.||+.
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~ 79 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLP-NYGPETIRKYRGKSRSELPPHVFAIADRAYRN 79 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHhhcccCCCCCcHHHHHHhhccHHHhhccccccCCCCCCcccceEEEE
Q 000489 142 MISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQ 221 (1463)
Q Consensus 142 m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpilEaFGnAkT~~N~nSSRfgk~~~l~ 221 (1463)
|..+++||||||||||||||||++|++|+||+.+++.. ...++++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~ 156 (679)
T cd00124 80 MLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSN---DTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQ 156 (679)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCC---cchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999997643 356999999999999999999999999999999999999
Q ss_pred EcCCCcccceeeeeecccccccccccCCCccceehhhcccCh--HHHhhccCCCCCCcccccCCCccccCCCCcHHHHHH
Q 000489 222 FDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEEYMK 299 (1463)
Q Consensus 222 f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 299 (1463)
||.+|.|+||+|.+|||||||||+|++||||||||||||+|. +++++|+|.++++|+||++++|..++++||+++|.+
T Consensus 157 f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 236 (679)
T cd00124 157 FDETGKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEE 236 (679)
T ss_pred ECCCCcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999996 888999999999999999999998899999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcCeeeecCCCCCc--ccccCcccHHHHHHHHHhcCCCHHHHHHHHhhceecc
Q 000489 300 TKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDS--SVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQT 377 (1463)
Q Consensus 300 ~~~al~~lg~~~~~~~~i~~ilaaiLhlGni~f~~~~~~~~--~~~~~~~~~~~l~~~a~lLgv~~~~l~~~l~~r~~~~ 377 (1463)
++.||+.|||+++++.+||+|||||||||||+|.+....+. +.+.+ ...++.+|.||||++++|.++||++++.+
T Consensus 237 ~~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 313 (679)
T cd00124 237 LKEALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVKN---TEVLSKAAELLGLDPEELEEALTYKVTKV 313 (679)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecCC---HHHHHHHHHHhCCCHHHHHHHhhccEEEe
Confidence 99999999999999999999999999999999987543332 23333 34799999999999999999999999999
Q ss_pred cCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcceeeeecccCCccCCCCchhHHHhhhhhhHHh
Q 000489 378 REGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMNSQMQIGVLDIYGFESFKHNSFEQFCINFANEKLQ 457 (1463)
Q Consensus 378 ~~e~~~~~l~~~~a~~~rd~lak~lY~~lF~wiv~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNE~Lq 457 (1463)
+++.+++++++++|..+||+|||+||++||+|||.+||.+|..+.....+||||||||||+|+.||||||||||||||||
T Consensus 314 ~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq 393 (679)
T cd00124 314 GGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQ 393 (679)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccCCCCCHHHHhcccchHHHH
Confidence 99999999999999999999999999999999999999999887667889999999999999999999999999999999
Q ss_pred hhhhHHHHHHhHHHHhhcCCCcccccccChHHHHHHhhhccCccccccccccchhhhhhcccCCCCchhhHHHhhhhcc-
Q 000489 458 QHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPVLS- 536 (1463)
Q Consensus 458 ~~f~~~vf~~eq~~y~~E~i~~~~i~~~dn~~~l~lie~~~~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~~~~~- 536 (1463)
++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.||+++|| |||++|+++|++|++|+++.|.
T Consensus 394 ~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLd--------ee~~~~~~~d~~~~~kl~~~~~~ 465 (679)
T cd00124 394 QFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLD--------EECLFPKGTDETFLEKLNNKLKS 465 (679)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHH--------HHhCCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999985421
Q ss_pred ------------------------------------------------------------ccc-------------cCCC
Q 000489 537 ------------------------------------------------------------EES-------------SRSS 543 (1463)
Q Consensus 537 ------------------------------------------------------------~~~-------------~~~~ 543 (1463)
... ..+.
T Consensus 466 ~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~ 545 (679)
T cd00124 466 NNAFYPAKKNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTGSTSSKGKK 545 (679)
T ss_pred CcccccCCCCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccccccccccccc
Confidence 000 0011
Q ss_pred CccccHHHHHHHHHHHHHHHHcccCCeeEEEecCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCCccchhhHHHH
Q 000489 544 YKFSSVASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDR 623 (1463)
Q Consensus 544 ~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~r 623 (1463)
.+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+++|||+|++|.+|+.|
T Consensus 546 ~~~~tv~~~f~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~r 625 (679)
T cd00124 546 KKGQTVGSQFRTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSR 625 (679)
T ss_pred cCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHH
Confidence 24579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhcccchHHHHHHHHHHHHccc--Cccccccceeeecccccccccchh
Q 000489 624 FGLLALEFMDESYEEKALTEKILRKLKL--ENFQLGRTKVFLRAGQIGILDSRR 675 (1463)
Q Consensus 624 y~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~~~~~Le~~r 675 (1463)
|++|++..........+.|+.++..+++ ++|++|+||||||++++..||..|
T Consensus 626 Y~~L~~~~~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 626 YRFLAPDLLEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred HHHhCcccccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 9999987654322233349999998876 489999999999999999999865
No 20
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=5e-158 Score=1362.63 Aligned_cols=635 Identities=40% Similarity=0.696 Sum_probs=583.3
Q ss_pred CCCCcCccccCCCCCchhHHHHHHHHhhcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHH
Q 000489 59 EHGGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADAS 138 (1463)
Q Consensus 59 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~~~~~~~l~PHi~avA~~A 138 (1463)
...|+|||+-|+-++|.+|..||+.||..+.||||+|.|||+||||+.+| +|++..|..|.|++.-+.||||||+|+.+
T Consensus 16 k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~-~ft~~~~~~YqG~~q~E~pPHiyAladnm 94 (1106)
T KOG0162|consen 16 KHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMP-YFTEKEMELYQGAAQYENPPHIYALADNM 94 (1106)
T ss_pred eeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccc-cchHHHHHHhhchhhccCCchhhhhHHHH
Confidence 45799999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHhhcccCCCCCcHHHHHHhhccHHHhhccccccCCCCCCcccceE
Q 000489 139 YRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFV 218 (1463)
Q Consensus 139 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpilEaFGnAkT~~N~nSSRfgk~~ 218 (1463)
|++|....+|||||||||||||||++||.||+|++.+++. +..-..|.+-||++||+|||||||||+||+||||||||+
T Consensus 95 Y~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~~-g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~ 173 (1106)
T KOG0162|consen 95 YRNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSGG-GEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYL 173 (1106)
T ss_pred HHHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhccC-CcchhhhhhHhhccchHHHHhcchhhhccCCcccccceE
Confidence 9999999999999999999999999999999999999843 344557888999999999999999999999999999999
Q ss_pred EEEEcCCCcccceeeeeecccccccccccCCCccceehhhcccCh--HHHhhccCCCCCCcccccCCCccccCCCCcHHH
Q 000489 219 EIQFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEE 296 (1463)
Q Consensus 219 ~l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~ 296 (1463)
+|+|+..|..+|++|.+|||||||||.|.++||||||||||++|+ +.+..|++..|+.|.||+.++|+.++++||..+
T Consensus 174 Ei~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kd 253 (1106)
T KOG0162|consen 174 EIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKD 253 (1106)
T ss_pred EEEecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHH
Confidence 999999999999999999999999999999999999999999998 667889999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCeeeecCCCCCcccccCcccHHHHHHHHHhcCCCHHHHHHHHhhceec
Q 000489 297 YMKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQ 376 (1463)
Q Consensus 297 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~l~~~l~~r~~~ 376 (1463)
|++|+.||+++|+.+++|+.||++||||||||||.|.+. +..+.+.+.+ .++-.|.|||||+..|.+.||.|.|.
T Consensus 254 fq~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee--~~~a~V~~~~---~~~f~ayLlgi~s~~l~~~Lt~R~M~ 328 (1106)
T KOG0162|consen 254 FQETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEE--GNYAAVSDKS---VLEFPAYLLGIDSARLEEKLTSRIME 328 (1106)
T ss_pred HHHHHHHheeccCChHHHHHHHHHHHHHHhccceeEEee--CCcceeccch---HHHhHHHHhcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999972 2333444432 68999999999999999999999997
Q ss_pred cc----CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC-CcceeeeecccCCccCCCCchhHHHhhh
Q 000489 377 TR----EGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMN-SQMQIGVLDIYGFESFKHNSFEQFCINF 451 (1463)
Q Consensus 377 ~~----~e~~~~~l~~~~a~~~rd~lak~lY~~lF~wiv~~iN~~l~~~~~-~~~~IgiLDi~GFE~f~~NsfeQlciNy 451 (1463)
+. .+.+.+||+++||...||||||+||.+||||||++||.++...++ ....||||||||||+|++||||||||||
T Consensus 329 s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINf 408 (1106)
T KOG0162|consen 329 SKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINF 408 (1106)
T ss_pred hcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHH
Confidence 64 478999999999999999999999999999999999999975433 5678999999999999999999999999
Q ss_pred hhhHHhhhhhHHHHHHhHHHHhhcCCCcccccccChHHHHHHhhh-ccCccccccccccchhhhhhccc----CCCCchh
Q 000489 452 ANEKLQQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEK-VTYQTNTFLDKNRDYVVVEHCNL----LSSSKCP 526 (1463)
Q Consensus 452 aNE~Lq~~f~~~vf~~eq~~y~~E~i~~~~i~~~dn~~~l~lie~-~~~Gil~lLd~~~~~~~~ee~~~----p~~~~~~ 526 (1463)
.||||||.|.+-+++.|||||.+|||.|++|+|.||.-|.||||. +|-||+++|| +.|.- ..|-|++
T Consensus 409 VNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ld--------D~~At~Ha~~~~aDqa 480 (1106)
T KOG0162|consen 409 VNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALD--------DVCATAHADSEGADQA 480 (1106)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHH--------HHHHHhccccchhHHH
Confidence 999999999999999999999999999999999999999999995 5899999999 88854 3456888
Q ss_pred hHHHhhhhcc-----------------------------------------------------------ccccCCCCccc
Q 000489 527 FVAGLFPVLS-----------------------------------------------------------EESSRSSYKFS 547 (1463)
Q Consensus 527 f~~kl~~~~~-----------------------------------------------------------~~~~~~~~~~~ 547 (1463)
|+++|...|. .+.. +..+.+
T Consensus 481 ~~qrLn~~~~s~phF~~~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~d-skrRP~ 559 (1106)
T KOG0162|consen 481 LLQRLNKLFGSHPHFESRSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDAD-SKRRPP 559 (1106)
T ss_pred HHHHHHHHhcCCCccccccCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhccc-ccCCCC
Confidence 9988763211 0011 112558
Q ss_pred cHHHHHHHHHHHHHHHHcccCCeeEEEecCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCCccchhhHHHHHhhh
Q 000489 548 SVASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLL 627 (1463)
Q Consensus 548 tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l 627 (1463)
|.|++.+.|-++|.+||..|.||||||||||+.|.|+.||...|++|+.|.|+-|.|||+|+||.+|..|+.|++||.+|
T Consensus 560 Tag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyail 639 (1106)
T KOG0162|consen 560 TAGDKIKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAIL 639 (1106)
T ss_pred CchhhHHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccc-hHHHHHHHHHHHHccc--Cccccccceeeeccc-ccccccchhhhhhhhHHHHHHHHHhcchhhhhHHhhh
Q 000489 628 ALEFMDES-YEEKALTEKILRKLKL--ENFQLGRTKVFLRAG-QIGILDSRRAEVLDSAARCIQHRWRTFIAHRNFVSIR 703 (1463)
Q Consensus 628 ~~~~~~~~-~~~~~~~~~il~~~~~--~~~~iGkTkVFlr~~-~~~~Le~~r~~~~~~aa~~IQ~~~R~~~~Rk~~~~~r 703 (1463)
.|..+... .|++.+|+.||+...+ +.||+|.||||++.. .+-.||.+|+......|..||+.||.|++|++|.++|
T Consensus 640 sp~t~~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~r 719 (1106)
T KOG0162|consen 640 SPQTWPTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMR 719 (1106)
T ss_pred CcccccccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98865422 3889999999998766 479999999999985 5678899999999999999999999999999999998
Q ss_pred hhHHHH
Q 000489 704 AAAFVL 709 (1463)
Q Consensus 704 ~a~i~i 709 (1463)
.-+..+
T Consensus 720 ee~t~l 725 (1106)
T KOG0162|consen 720 EEATKL 725 (1106)
T ss_pred HHHHHH
Confidence 755443
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=5e-150 Score=1445.97 Aligned_cols=590 Identities=48% Similarity=0.817 Sum_probs=518.1
Q ss_pred cCccccCCCCCchhHHHHHHHHhhcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHHHH
Q 000489 63 VDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRAM 142 (1463)
Q Consensus 63 ~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~~~~~~~l~PHi~avA~~Ay~~m 142 (1463)
||||+.|++|||++|||+|+.||..+.||||+|++|||||||+++| +|++++++.|+++..+++||||||||++||+.|
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m 79 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLP-LYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQM 79 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--S-TSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhh-hhhhhhhhhhhhhccccccCccchhhhcccccc
Confidence 6999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHhhcccC-CCCCcHHHHHHhhccHHHhhccccccCCCCCCcccceEEEE
Q 000489 143 ISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAA-GDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQ 221 (1463)
Q Consensus 143 ~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~-~~~~~ve~~il~snpilEaFGnAkT~~N~nSSRfgk~~~l~ 221 (1463)
+++++||||||||||||||||++|++|+||+.++.... .....++++|+++||||||||||||++|+||||||||++|+
T Consensus 80 ~~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~ 159 (689)
T PF00063_consen 80 LRTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQ 159 (689)
T ss_dssp HHHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEE
T ss_pred cccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEE
Confidence 99999999999999999999999999999999976543 23457999999999999999999999999999999999999
Q ss_pred EcCCCcccceeeeeecccccccccccCCCccceehhhcccCh--HHHhhccCCCCCCcccccCCCccccCCCCcHHHHHH
Q 000489 222 FDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYELDGVSSAEEYMK 299 (1463)
Q Consensus 222 f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 299 (1463)
||.+|.++||+|.+|||||||||.|++||||||||||||+|+ +++++|+|.++.+|+||+++++..+++.||+++|..
T Consensus 160 f~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~ 239 (689)
T PF00063_consen 160 FDDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQE 239 (689)
T ss_dssp EETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHH
T ss_pred ecccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhh
Confidence 999999999999999999999999999999999999999997 778899999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcCeeeecCCCCCcccccCcccHHHHHHHHHhcCCCHHHHHHHHhhceecccC
Q 000489 300 TKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTRTIQTRE 379 (1463)
Q Consensus 300 ~~~al~~lg~~~~~~~~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~l~~~a~lLgv~~~~l~~~l~~r~~~~~~ 379 (1463)
++.||+.|||+++++.+||+|||||||||||+|.+..+.+.+.+.+.. .++.||.||||++++|.++||+|++.+++
T Consensus 240 l~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~---~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 316 (689)
T PF00063_consen 240 LKDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENSE---ELQKAAELLGVDSEELEKALTTRTIKVGG 316 (689)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTSH---HHHHHHHHTTS-HHHHHHHHHSEEEESTT
T ss_pred hhhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechHH---HHHHhhhhcCCCHHHHHHHHhhccccccc
Confidence 999999999999999999999999999999999987655555555543 59999999999999999999999999999
Q ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC-CCcceeeeecccCCccCCCCchhHHHhhhhhhHHhh
Q 000489 380 GSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDM-NSQMQIGVLDIYGFESFKHNSFEQFCINFANEKLQQ 458 (1463)
Q Consensus 380 e~~~~~l~~~~a~~~rd~lak~lY~~lF~wiv~~iN~~l~~~~-~~~~~IgiLDi~GFE~f~~NsfeQlciNyaNE~Lq~ 458 (1463)
|.+++++++++|..+||+|||+||++||+|||.+||.+|+... ....+||||||||||+|..|||||||||||||+||+
T Consensus 317 e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~ 396 (689)
T PF00063_consen 317 ETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQ 396 (689)
T ss_dssp SEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccc
Confidence 9999999999999999999999999999999999999998765 677899999999999999999999999999999999
Q ss_pred hhhHHHHHHhHHHHhhcCCCcccccc-cChHHHHHHhhhccCccccccccccchhhhhhcccCCCCchhhHHHhhhhc-c
Q 000489 459 HFNEHVFKMEQEEYRREEINWSYIEF-IDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGLFPVL-S 536 (1463)
Q Consensus 459 ~f~~~vf~~eq~~y~~E~i~~~~i~~-~dn~~~l~lie~~~~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl~~~~-~ 536 (1463)
+|++++|+.||++|.+|||+|..|+| .||++|||||+++|.|||++|| |||.+|+++|++|+.++...| .
T Consensus 397 ~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLd--------ee~~~~~~sd~~fl~kl~~~~~~ 468 (689)
T PF00063_consen 397 FFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLD--------EECLLPRGSDESFLEKLLKRHSG 468 (689)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHH--------HHCTSTTS-HHHHHHHHHHHHTT
T ss_pred eeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhh--------hhhhcccchhhHHHHHHHhhccc
Confidence 99999999999999999999999999 9999999999999999999999 999999999999999886543 0
Q ss_pred ----------------------------------------------------------------cccc------------
Q 000489 537 ----------------------------------------------------------------EESS------------ 540 (1463)
Q Consensus 537 ----------------------------------------------------------------~~~~------------ 540 (1463)
....
T Consensus 469 ~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~ 548 (689)
T PF00063_consen 469 KHPSFVKPRFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRR 548 (689)
T ss_dssp TSTTEECTSSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTT
T ss_pred CCCcccccccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccccccccccccccc
Confidence 0000
Q ss_pred -----------CCCCccccHHHHHHHHHHHHHHHHcccCCeeEEEecCCCCCCCCCCChhHHHHHhhccChhhHHHHHhh
Q 000489 541 -----------RSSYKFSSVASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLA 609 (1463)
Q Consensus 541 -----------~~~~~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~ 609 (1463)
....+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||...|.+||||+||+|++||++.
T Consensus 549 ~~~~~~~~~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~ 628 (689)
T PF00063_consen 549 SSSSSTQSRSSGSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQ 628 (689)
T ss_dssp TTCCCTTSSCCCGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHC
T ss_pred cccccccccccccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhc
Confidence 000134799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccchhhHHHHHhhhhhhhccc----chHHHHHHHHHHHHccc--Cccccccceeeec
Q 000489 610 GYPTRRTYSDFVDRFGLLALEFMDE----SYEEKALTEKILRKLKL--ENFQLGRTKVFLR 664 (1463)
Q Consensus 610 gyp~r~~~~~F~~ry~~l~~~~~~~----~~~~~~~~~~il~~~~~--~~~~iGkTkVFlr 664 (1463)
|||+|++|.+|++||++|++..... ..++++.|+.||+.+++ +.|++|+||||||
T Consensus 629 Gyp~r~~~~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 629 GYPVRLTFDEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp SSSEEEEHHHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred ccceecchhhhhhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 9999999999999999999876532 35789999999999987 5899999999997
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=2e-104 Score=1002.46 Aligned_cols=690 Identities=34% Similarity=0.544 Sum_probs=604.3
Q ss_pred CCCCcCccccCCCCCchhHHHHHHHHhhcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHH
Q 000489 59 EHGGVDDMTKLTYLNEPGVLYNLERRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADAS 138 (1463)
Q Consensus 59 ~~~~~~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~~~~~~~l~PHi~avA~~A 138 (1463)
...+++||+.|.+++|+.+++||..||..+.||||.|++|++||||+.+|.+|.+..+..|.+...|++|||||++|+.|
T Consensus 59 ~~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~~ 138 (1062)
T KOG4229|consen 59 QVEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIADLA 138 (1062)
T ss_pred ccccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhhhhH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHhhcccCCCCCcHHHHHHhhccHHHhhccccccCCCCCCcccceE
Q 000489 139 YRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFV 218 (1463)
Q Consensus 139 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpilEaFGnAkT~~N~nSSRfgk~~ 218 (1463)
|+.|++...||||+||||||||||++|+++++||+.++. +....++.+|+.+||+|||||||+|.+|||||||||||
T Consensus 139 y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq---~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i 215 (1062)
T KOG4229|consen 139 YQDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQ---GNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYI 215 (1062)
T ss_pred HHhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhc---CCCCchhhhhhcchHHHHHhcccCCcccCchhhhhheE
Confidence 999999999999999999999999999999999999984 12457899999999999999999999999999999999
Q ss_pred EEEEcCCCcccceeeeeecccccccccccCCCccceehhhcccCh--HHHhhccCCCCCCcccccCCCcccc-CCCCcHH
Q 000489 219 EIQFDTNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG--RDAEKYKLDHPSHFHYLNQSKVYEL-DGVSSAE 295 (1463)
Q Consensus 219 ~l~f~~~g~i~ga~i~~yLLEksRvv~~~~~ErnfHiFYql~~~~--~~~~~~~l~~~~~~~yl~~~~~~~~-~~~~d~~ 295 (1463)
++.|...|.|.||.+..||||||||+.|+.+||||||||++++|. +++..+.|+.++.|.||+++.+..+ ++.++..
T Consensus 216 ~~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~~ 295 (1062)
T KOG4229|consen 216 KVNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDVA 295 (1062)
T ss_pred EeccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHHH
Confidence 999999999999999999999999999999999999999999997 6677899999999999999999999 9999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCeeeecCC--CCCcccccCcccHHHHHHHHHhcCCCHHHHHHHHhhc
Q 000489 296 EYMKTKRAMDIVGISHEDQEAIFRTLAAILHLGNIEFSPGK--EHDSSVIKDQKSSFHLQMAADLFMCDVNLLLATLCTR 373 (1463)
Q Consensus 296 ~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhlGni~f~~~~--~~~~~~~~~~~~~~~l~~~a~lLgv~~~~l~~~l~~r 373 (1463)
+|..+..||..+||+.+++.+||+++|||||+|||+|.+.. ..|.+.+.+. .+++.+|.||.++.+.|.+++|.+
T Consensus 296 ~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~~---~~v~~vA~lL~~~~~~l~~alt~~ 372 (1062)
T KOG4229|consen 296 QFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVENE---EAVERVACLLLIKEKLLQEALTAR 372 (1062)
T ss_pred hHHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhcccc---hHHHHHHHHhhcCHHHhhhhhccc
Confidence 99999999999999999999999999999999999998632 3344444443 479999999999999999999999
Q ss_pred eecccCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC--CcceeeeecccCCccCCCCchhHHHhhh
Q 000489 374 TIQTREGSIIKALDCNAAVASRDALAKTVYSRLFDWLVEKINRSVGQDMN--SQMQIGVLDIYGFESFKHNSFEQFCINF 451 (1463)
Q Consensus 374 ~~~~~~e~~~~~l~~~~a~~~rd~lak~lY~~lF~wiv~~iN~~l~~~~~--~~~~IgiLDi~GFE~f~~NsfeQlciNy 451 (1463)
+.+++++.+..+++.++|.+.||++||++|++||.|||.+||..+..+.. +...||||||||||+|+.|||||+||||
T Consensus 373 ~~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~ 452 (1062)
T KOG4229|consen 373 VNVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINL 452 (1062)
T ss_pred ceeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999977654 3689999999999999999999999999
Q ss_pred hhhHHhhhhhHHHHHHhHHHHhhcCCCcccccccChHHHHHHhhhccCccccccccccchhhhhhcccCCCCchhhHHHh
Q 000489 452 ANEKLQQHFNEHVFKMEQEEYRREEINWSYIEFIDNQDVLDLIEKVTYQTNTFLDKNRDYVVVEHCNLLSSSKCPFVAGL 531 (1463)
Q Consensus 452 aNE~Lq~~f~~~vf~~eq~~y~~E~i~~~~i~~~dn~~~l~lie~~~~Gil~lLd~~~~~~~~ee~~~p~~~~~~f~~kl 531 (1463)
|||+||++||+|||.+||+||..|+|+|..|.|.||++|+|+|..||+||+.+|| |+|.||++||.++..|+
T Consensus 453 Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liD--------ees~fP~~td~tl~~k~ 524 (1062)
T KOG4229|consen 453 ANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLID--------EESRFPKATDQTLLLKL 524 (1062)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheec--------ccCcCCchHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999999887
Q ss_pred hhhcc---------------------------------------------------------------------------
Q 000489 532 FPVLS--------------------------------------------------------------------------- 536 (1463)
Q Consensus 532 ~~~~~--------------------------------------------------------------------------- 536 (1463)
..++.
T Consensus 525 ~~q~~~~~~y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra 604 (1062)
T KOG4229|consen 525 NMQHGSNNLYVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRA 604 (1062)
T ss_pred hhhhhcccccccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhh
Confidence 54310
Q ss_pred -------------------------------------------------------------------------------c
Q 000489 537 -------------------------------------------------------------------------------E 537 (1463)
Q Consensus 537 -------------------------------------------------------------------------------~ 537 (1463)
+
T Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~ 684 (1062)
T KOG4229|consen 605 LKVAMPVPLEVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQE 684 (1062)
T ss_pred hcccccccchhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcc
Confidence 0
Q ss_pred --------------------cc-c------------C-----------------------CC-----------C------
Q 000489 538 --------------------ES-S------------R-----------------------SS-----------Y------ 544 (1463)
Q Consensus 538 --------------------~~-~------------~-----------------------~~-----------~------ 544 (1463)
.. . + .+ .
T Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 764 (1062)
T KOG4229|consen 685 RKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPD 764 (1062)
T ss_pred cCchhhhhhcccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCcc
Confidence 00 0 0 00 0
Q ss_pred ----------------------ccccHHHHHHHHHHHHHHHHcccCCeeEEEecCCCCCCCCCCChhHHHHHhhccChhh
Q 000489 545 ----------------------KFSSVASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLE 602 (1463)
Q Consensus 545 ----------------------~~~tv~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle 602 (1463)
++.....++......++..+....|.|++|++-|-.+....|+...|..|+++.|+++
T Consensus 765 ~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~ 844 (1062)
T KOG4229|consen 765 PCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELD 844 (1062)
T ss_pred ccCCccccchhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhc
Confidence 0000111233455668888888999999999999888888999999999999999999
Q ss_pred HHHHHhhcCCCccchhhHHHHHhhhhhhhcccchHHHHHHHHHHHH--cccCccccccceeeecccccccccchhhhhhh
Q 000489 603 AVRISLAGYPTRRTYSDFVDRFGLLALEFMDESYEEKALTEKILRK--LKLENFQLGRTKVFLRAGQIGILDSRRAEVLD 680 (1463)
Q Consensus 603 ~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~--~~~~~~~iGkTkVFlr~~~~~~Le~~r~~~~~ 680 (1463)
..++...+|+..+++.+|...+++..+.... ......... .+.++++.|++++|+...-...++..-..-..
T Consensus 845 ~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~------~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 918 (1062)
T KOG4229|consen 845 QEQVRRSLYFAEISPQDSVNQSRIGLPETVD------TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEAN 918 (1062)
T ss_pred cchheeccccccccchhccccccccCCccch------hhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhH
Confidence 9999999999999999999999998873221 111112221 24468999999999987665444332211112
Q ss_pred h-HHHHHHHHHhcchhhhhHHhhhhhHHHHHHHhhcccccccccc-ccchhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000489 681 S-AARCIQHRWRTFIAHRNFVSIRAAAFVLQAQCRGCLARKLYGV-KRETAAAISLQKYVRRWLSRHAFLKLSLAAIVIQ 758 (1463)
Q Consensus 681 ~-aa~~IQ~~~R~~~~Rk~~~~~r~a~i~iQ~~~Rg~laRk~~~~-~r~~~aai~IQ~~~R~~~~Rk~y~~~r~aai~iQ 758 (1463)
. -+...|++++....++.+.++..+.+.+| |++++.|+.... .....++..+|..|+.+..+..+.-.+.+.+.+|
T Consensus 919 ~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 996 (1062)
T KOG4229|consen 919 DELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQ 996 (1062)
T ss_pred HHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchh
Confidence 2 36778999999999999999999999999 888888775542 2344578889999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 000489 759 SNIRGFSIRERF 770 (1463)
Q Consensus 759 s~~Rg~~aR~~~ 770 (1463)
..+++...+..+
T Consensus 997 ~~~~~~~~~~~~ 1008 (1062)
T KOG4229|consen 997 SPRSRPAYTMIF 1008 (1062)
T ss_pred cccccchhhhhH
Confidence 998887665543
No 23
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=99.97 E-value=1.5e-29 Score=300.98 Aligned_cols=292 Identities=18% Similarity=0.307 Sum_probs=230.8
Q ss_pred hhcCCCCCCcchHHHHHHHHhcccc--cccch----hHHHHHHHHHHHHhhccC-CCCCccchhhhhHHHHHHHHHHhhh
Q 000489 1073 ENLGFNNGKPVAACIIYKSLVHWQA--FESER----TAIFDYIIEGINDVLKVG-DENSILPYWLSNASALLCLLQRSLR 1145 (1463)
Q Consensus 1073 ~~~~~~~~kp~~A~ilf~cl~~~~~--~~~~~----~~ll~~ii~~I~~~i~~~-~d~~~layWLSN~~~Ll~~lqq~~~ 1145 (1463)
.+.+..+++..|.|- |..-.|.+. +..++ +.+|.++++.++.++.++ ++-..|+|||+|++++|||++++..
T Consensus 560 ~~a~t~~~~~s~~y~-y~~S~~yrp~~~pTer~hk~i~f~~~~~s~~~~viQeq~~~~~~LaFWmANaSEflhfik~Dr~ 638 (1629)
T KOG1892|consen 560 TNASTVHFKLSPTYR-YVLSNQYRPDISPTERTHKVIAFVNKMVSMMEGVIQEQKNIAGALAFWMANASEFLHFIKQDRD 638 (1629)
T ss_pred CcccccccccCcccc-hhhhcccccccCccccchhHHHHHHHHHHHHHHHHHHhhcccchhHHhhcCHHHHHHHHHhccc
Confidence 355555556666552 222223322 44444 789999999999999998 5556899999999999999998754
Q ss_pred ccCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 000489 1146 SNGLLTANTPRTTGSTGLPGRIAYGIKSPFKYIGFGDGIPHVEARYPAILFKQQLTACVEKIFGLIRDNLKKELSPLLGS 1225 (1463)
Q Consensus 1146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~~~~p~~~~~qqL~~~~~~iy~~l~~~~~~~l~~~L~~ 1225 (1463)
...+ .+.-+..|...|+.+|..|+.+++.+|++-+..
T Consensus 639 ls~~-------------------------------------------~~~aq~vla~~vq~aFr~LV~clqsel~~~~~a 675 (1629)
T KOG1892|consen 639 LSRI-------------------------------------------TLDAQDVLAHLVQMAFRYLVHCLQSELNNYMPA 675 (1629)
T ss_pred hhhe-------------------------------------------ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 122345677789999999999999999998764
Q ss_pred cccCCccccccCCCcCCCCCCCCCcccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHhHHHHHhhhcc--CC
Q 000489 1226 CIQVPKTARVHAGKLSRSPGVQQQSHTSQWDNIIKFLDSLMRRLRENHVPSFFIRKLITQVFSFINISLFNSLLLR--RE 1303 (1463)
Q Consensus 1226 ~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~il~~L~~~~~~L~~~~V~~~l~~Q~f~QlF~~ina~lfN~Ll~r--~~ 1303 (1463)
.+..+ ....+...+++..|+..|.+|+.|+|+..|+.|+|+|||+|||+++||+|+.. ..
T Consensus 676 fLden------------------~~~~~a~gdVlh~L~~aM~llRrCrvNAALTIQLfsqLfH~iN~~~FN~lVt~~~s~ 737 (1629)
T KOG1892|consen 676 FLDEN------------------SLQRPAIGDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNRLVTDPDSG 737 (1629)
T ss_pred Hhhhc------------------cccCccccchHHHhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhhcccCchh
Confidence 44321 12234567899999999999999999999999999999999999999999998 78
Q ss_pred cccccchhhhhhchHHHHHHHhhcCcccccccHHhhHHHHHHHHHHhhcccCccCHHHHHHccCCCCCHHHHHHHHhcCc
Q 000489 1304 CCTFSNGEYVKSGLAELEKWIVSAKEEFAGTSWHELNYIRQAVGFLVIHQKRKKSLDEIRQDLCPALTVRQIYRICTMYW 1383 (1463)
Q Consensus 1304 ~cs~s~G~qIr~nls~Le~W~~~~~l~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~c~~Ls~~Ql~kIL~~Y~ 1383 (1463)
+|+--+|--|++.|..||.||...|+|.+++ |||..|+||++||+++|....|+..+ ...|.+||+.|+.+||..|+
T Consensus 738 ~cs~~wGk~~~~rl~~ie~waErqGlElAAd--CHL~ri~Qaa~lL~~~K~a~ddi~~l-~stCfkLNSLQ~~alLq~~~ 814 (1629)
T KOG1892|consen 738 LCSHYWGKIIRQRLGHIEAWAERQGLELAAD--CHLSRIVQAATLLTMDKYAPDDIPNL-NSTCFKLNSLQLQALLQNYH 814 (1629)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcchHhhh--ccHHHHHHHHHHHhccccChhhHHhh-ccchhhcchHHHHHHHhcCC
Confidence 9999999999999999999999999999888 99999999999999997777777777 68999999999999999999
Q ss_pred cCCCCCccCCHHHHHHHHHHhhhcCCC---CCCCc--ccccCCccCCCCccc
Q 000489 1384 DDKYGTQSVSNEVVAQMREILNKDNHN---LSSNS--FLLDDDLSIPFSTED 1430 (1463)
Q Consensus 1384 ~d~~e~~~v~~~~i~~v~~~~~~~~~~---~~~~~--~llD~~~~~Pf~~~~ 1430 (1463)
+++.|+ ++|.+++..+..+.....+. .++.. |--+.+.-+||.+++
T Consensus 815 ~~~~e~-~~p~dlvd~v~r~AE~~ADeLtr~DGreV~LEEspeL~LpfLlP~ 865 (1629)
T KOG1892|consen 815 CAPDEP-FIPTDLVDNVVRVAENTADELTRSDGREVQLEESPELQLPFLLPE 865 (1629)
T ss_pred CCCCCC-CCchHHHHHHHHHHHhhhhHhhhccCceeecccCcccccceeecC
Confidence 999996 99999999885544322211 12223 333445558887776
No 24
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.94 E-value=6.8e-28 Score=236.46 Aligned_cols=105 Identities=38% Similarity=0.642 Sum_probs=89.2
Q ss_pred HHHHHHHHhHhHHHHHhhhccCCcccccchhhhhhchHHHHHHHhhcCcccccccHHhhHHHHHHHHHHhhcccCccCHH
Q 000489 1281 KLITQVFSFINISLFNSLLLRRECCTFSNGEYVKSGLAELEKWIVSAKEEFAGTSWHELNYIRQAVGFLVIHQKRKKSLD 1360 (1463)
Q Consensus 1281 Q~f~QlF~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~l~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~ 1360 (1463)
|+|+|+|||||+.+||+||.|+++|+|++|+|||+||+.||+||+++|++.+ ++++|.|++||++|||++|++..|.+
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~~~--~~~~l~~l~Qa~~lL~~~k~~~~d~~ 78 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLEEA--AEEHLQPLSQAANLLQLRKSTLQDWD 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTSTTH---HHHCHHHHHHHHHCCC--SSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 8999999999999999999999999999999999999999999999998544 68999999999999999765566555
Q ss_pred HHHHccCCCCCHHHHHHHHhcCccCCCC
Q 000489 1361 EIRQDLCPALTVRQIYRICTMYWDDKYG 1388 (1463)
Q Consensus 1361 ~i~~~~c~~Ls~~Ql~kIL~~Y~~d~~e 1388 (1463)
.+ +++||+|||.||++||++|+||++|
T Consensus 79 ~~-~~~c~~Ln~~Qi~~iL~~Y~~~~~e 105 (105)
T PF01843_consen 79 SL-RETCPSLNPAQIRKILSNYQPDDYE 105 (105)
T ss_dssp HH-CCCTTTS-HHHHHHHHCCB---TTS
T ss_pred HH-HHHcccCCHHHHHHHHHhCCCcCCC
Confidence 56 7999999999999999999999986
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.20 E-value=4.2e-07 Score=124.16 Aligned_cols=240 Identities=16% Similarity=0.092 Sum_probs=121.3
Q ss_pred HHHHHHcccCCeeEEEecCCCCCCCCCCChhHHHHHhhccChhhHHHHHhhcCCCccchhhHHHHHhhhhhhhccc----
Q 000489 559 ALMETLNSTEPHYIRCVKPNSLNRPQKFENPSILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLLALEFMDE---- 634 (1463)
Q Consensus 559 ~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~---- 634 (1463)
.-+....-+.+ |+|.-+|-..++..-.+..|+.+|+|++ .+.|..-..| +..+..+..++.. ......+
T Consensus 566 ~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s~-~~~v~~l~~~---~~~~~~~~~~~~~-~~~~K~g~F~T 638 (1930)
T KOG0161|consen 566 AHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQST-NKLVSSLFQD---YAGAAAAAKGGEA-LKKTKKGSFRT 638 (1930)
T ss_pred hhhheeeecce--eccCccchhhcCCCCchHHHHHHHHhcc-cHHHHHHhhh---hhccchhhhhhhh-hcccCCcchhh
Confidence 33333333444 9999999888888888999999999999 8888776555 6677777776655 2111111
Q ss_pred -chHHHHHHHHHHHHcccCccccccceeeec---cccc---ccccchhhhhhhhHHHHHHHHHhcchhhhhHHhhhhhHH
Q 000489 635 -SYEEKALTEKILRKLKLENFQLGRTKVFLR---AGQI---GILDSRRAEVLDSAARCIQHRWRTFIAHRNFVSIRAAAF 707 (1463)
Q Consensus 635 -~~~~~~~~~~il~~~~~~~~~iGkTkVFlr---~~~~---~~Le~~r~~~~~~aa~~IQ~~~R~~~~Rk~~~~~r~a~i 707 (1463)
+.-.++.-..++..+....-.|=+--|+.. +|.+ ..|..+|-.-+-. ++.|.+ .||-.|-.|...+.---
T Consensus 639 vs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLE-gIRicR--~GfPnr~~~~eFrqRy~ 715 (1930)
T KOG0161|consen 639 VSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLE-GIRICR--QGFPNRMPFQEFRQRYE 715 (1930)
T ss_pred HHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHH-HHHHHH--hhCccccchHHHHHhHH
Confidence 112233334444444322222222222221 1111 0111111111111 122222 34444444333221100
Q ss_pred HHHHHh--hccccccccccccchhhHHHH--------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000489 708 VLQAQC--RGCLARKLYGVKRETAAAISL--------------------QKYVRRWLSRHAFLKLSLAAIVIQSNIRGFS 765 (1463)
Q Consensus 708 ~iQ~~~--Rg~laRk~~~~~r~~~aai~I--------------------Q~~~R~~~~Rk~y~~~r~aai~iQs~~Rg~~ 765 (1463)
.+.... .|+..- ..++..| .+-+-+.+.-.+-.++...++.+|+.+|||+
T Consensus 716 lla~~~~~~~~~d~--------k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l 787 (1930)
T KOG0161|consen 716 LLAADEPKKGFSDG--------KKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYL 787 (1930)
T ss_pred hhhhhhcccccccc--------chhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111110 011100 0111111 1222223333344455567788999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHH
Q 000489 766 IRERFLHRKR-HKAATVIQACWRMCKFRSAFQHHQ---TSIIAIQCRWRQKLAKR 816 (1463)
Q Consensus 766 aR~~~~~~r~-~~aa~~IQ~~~R~~~~r~~y~~~~---~a~v~iQ~~~R~~~arr 816 (1463)
+|+.+..+.+ ..|+.+||+..|.|...+.+.+.+ +.-..|++.-+....++
T Consensus 788 ~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~ 842 (1930)
T KOG0161|consen 788 ARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRA 842 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 9998876654 677888999999998777655443 44445555544444443
No 26
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.64 E-value=1.2e-05 Score=105.39 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=78.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-
Q 000489 728 TAAAISLQKYVRRWLSRHAFLKLSLAAIVIQSNIRGFSIRERFLHRKRHKAATVIQACWRMCKFRSAFQHHQTSIIAIQ- 806 (1463)
Q Consensus 728 ~~aai~IQ~~~R~~~~Rk~y~~~r~aai~iQs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~y~~~~~a~v~iQ- 806 (1463)
..+++.||+.|||+..|++|.+..+.+..+|...+|+..|+....-...++++.+|..||....|..|+.....+..+|
T Consensus 745 ~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~ 824 (1463)
T COG5022 745 DNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQK 824 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999999999999999999999888777778999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 000489 807 CRWRQKLAKRE 817 (1463)
Q Consensus 807 ~~~R~~~arr~ 817 (1463)
..+|.+..+..
T Consensus 825 ~i~~~~~~~~~ 835 (1463)
T COG5022 825 TIKREKKLRET 835 (1463)
T ss_pred HHHHHHHHhHH
Confidence 55565555543
No 27
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.63 E-value=4.4e-08 Score=106.88 Aligned_cols=90 Identities=24% Similarity=0.245 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHhhcccCCCCCcHHHHHHhhccHHHhhc-cccccCCC
Q 000489 131 VFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNPLLEAFG-NARTVRND 209 (1463)
Q Consensus 131 i~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snpilEaFG-nAkT~~N~ 209 (1463)
||+.+..++..|+ ++.|+||+..|+||||||.|..--. ...+--...++ .+++..+..++++ +|.|.+|+
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G~~-------~~~Giip~~~~-~~~~ll~~g~~~R~~~~t~~N~ 78 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEGKR-------EGAGIIPRTVT-DVIDLMDKGNANRTTAATAMNE 78 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCCCC-------CCCCcchHHHH-HHHHHHhhccccccccccCCCC
Confidence 8998889999987 5799999999999999998732110 00010112232 3778888899999 99999999
Q ss_pred CCCcccceEEEEEcCCCccc
Q 000489 210 NSSRFGKFVEIQFDTNGRIS 229 (1463)
Q Consensus 210 nSSRfgk~~~l~f~~~g~i~ 229 (1463)
+|||+..+++|++.......
T Consensus 79 ~SSRsH~i~~i~v~~~~~~~ 98 (186)
T cd01363 79 HSSRSHSVFRIHFGGKNALA 98 (186)
T ss_pred ccCcccEEEEEEEEEeecCC
Confidence 99999999999997654443
No 28
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.62 E-value=1.8e-06 Score=109.91 Aligned_cols=86 Identities=34% Similarity=0.407 Sum_probs=81.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 000489 728 TAAAISLQKYVRRWLSRHAFLKLSLAAIVIQSNIRGFSIRERFLHRKRHKAATVIQACWRMCKFRSAFQHHQTSIIAIQC 807 (1463)
Q Consensus 728 ~~aai~IQ~~~R~~~~Rk~y~~~r~aai~iQs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~y~~~~~a~v~iQ~ 807 (1463)
..+++.||+.+|+|..|+.|.++|.+++.+|+.+||+++|+ ... +..||+.||+.||++..|+.|...+.+++.+|+
T Consensus 673 ~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs 749 (862)
T KOG0160|consen 673 SAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQS 749 (862)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999 333 789999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 000489 808 RWRQKLAKR 816 (1463)
Q Consensus 808 ~~R~~~arr 816 (1463)
.+|++++|.
T Consensus 750 ~~r~~~~r~ 758 (862)
T KOG0160|consen 750 GVRAMLARN 758 (862)
T ss_pred HHHHHHhcc
Confidence 999999998
No 29
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.32 E-value=7.2e-07 Score=113.36 Aligned_cols=128 Identities=27% Similarity=0.361 Sum_probs=78.7
Q ss_pred hhhhHHHHHHHHHhcchhhhhHHhhhhhHHHHHHHhhccccccccccccchhhHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000489 678 VLDSAARCIQHRWRTFIAHRNFVSIRAAAFVLQAQCRGCLARKLYGVKRETAAAISLQKYVRRWLSRHAFLKLSLAAIVI 757 (1463)
Q Consensus 678 ~~~~aa~~IQ~~~R~~~~Rk~~~~~r~a~i~iQ~~~Rg~laRk~~~~~r~~~aai~IQ~~~R~~~~Rk~y~~~r~aai~i 757 (1463)
....+|..||.++|+|..|+.|..++.-++.||+.+||+..|+.|.++-. + + ...++-|++ +..+
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~w--S-v--------~~lek~~lr----wR~k 872 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITW--S-V--------GVLEKLILR----WRRK 872 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheech--h-h--------hHHHHHHHH----HHHh
Confidence 34568899999999999999999999999999999999999998877541 1 1 111111111 1224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000489 758 QSNIRGFSIRERFLHRKRHKAATVIQACWRMCKFR--SAFQHHQTSIIAIQCRWRQKLAKRELRRLK 822 (1463)
Q Consensus 758 Qs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r--~~y~~~~~a~v~iQ~~~R~~~arr~~~~lk 822 (1463)
|..+|||..|+..... ..||+.||..+|.|..- ..|.++.+|++.||+.+|-+.++.+++++.
T Consensus 873 ~~g~Rgfk~~~~~e~~--~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~ 937 (975)
T KOG0520|consen 873 GKGFRGFKGRALFEEQ--ETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLL 937 (975)
T ss_pred hhhhcccccccchhcc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4455555444433222 23555555555555544 445555555555555555555555555443
No 30
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=98.22 E-value=3.2e-06 Score=68.13 Aligned_cols=41 Identities=32% Similarity=0.491 Sum_probs=37.2
Q ss_pred CcEEEEecCCCCEEEEEEEEeeCCCEEEEEecCCcEEEEcCc
Q 000489 6 GSKVWVEDKDLAWVAAEVVSDSVGRHVQVLTATGKKVLAAPE 47 (1463)
Q Consensus 6 g~~vw~~~~~~~~~~~~v~~~~~~~~~~v~~~~g~~~~~~~~ 47 (1463)
+.+|||||++++|+.|+| .+.+|+.++|++.+|++++++.+
T Consensus 1 K~~vWvpD~~egfv~g~I-~~~~g~~vtV~~~~G~~~tv~~d 41 (42)
T PF02736_consen 1 KKWVWVPDPKEGFVKGEI-IEEEGDKVTVKTEDGKEVTVKKD 41 (42)
T ss_dssp TTEEEEEESSSSEEEEEE-EEEESSEEEEEETTTEEEEEEGG
T ss_pred CCEEEEeCCcccEEEEEE-EEEcCCEEEEEECCCCEEEeCCC
Confidence 358999999999999999 68899999999999999988764
No 31
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.96 E-value=7.3e-06 Score=104.49 Aligned_cols=130 Identities=22% Similarity=0.243 Sum_probs=95.1
Q ss_pred hHHHHHHHHHhcchhhhhHHh-hh-----------hhHHHHHHHhhccccccccccccchhhHHHHHHHHHHHHHHHHHH
Q 000489 681 SAARCIQHRWRTFIAHRNFVS-IR-----------AAAFVLQAQCRGCLARKLYGVKRETAAAISLQKYVRRWLSRHAFL 748 (1463)
Q Consensus 681 ~aa~~IQ~~~R~~~~Rk~~~~-~r-----------~a~i~iQ~~~Rg~laRk~~~~~r~~~aai~IQ~~~R~~~~Rk~y~ 748 (1463)
.+|..||..+|.-..++.-.+ +. -..+.++..++ .+.......||..||+.+|+|..|+.|+
T Consensus 757 ~aa~r~q~vfr~~~~~~~~a~~i~~~~~~~i~~~~~~~m~~~~a~~------~~~~r~~~~aa~~iq~~f~~yk~r~~~l 830 (975)
T KOG0520|consen 757 QAAARIQAVFRAQSFQKKQAREIMDATKEQISEELAVSMKASSAFS------MCDDRSDPAAASRIQKKFRGYKQRKEFL 830 (975)
T ss_pred HHHHhhhhhhhhhhhhhhhHHHHHhhcchhhhhhhhhhhhcccchh------cCccccchhHHHHhhhhhhhHHhhhhhc
Confidence 456677777776554433221 11 12233333333 2233345578999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 000489 749 KLSLAAIVIQSNIRGFSIRERFLHR--------KRHKAATVIQACWRMCKFRSAFQHHQTSIIAIQCRWRQKLAKR 816 (1463)
Q Consensus 749 ~~r~aai~iQs~~Rg~~aR~~~~~~--------r~~~aa~~IQ~~~R~~~~r~~y~~~~~a~v~iQ~~~R~~~arr 816 (1463)
.+|.-++.||+.+||+..|+.|... +-.-++..+|+-+|+|..|....+...+++.||...|.+..-+
T Consensus 831 ~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~ 906 (975)
T KOG0520|consen 831 STRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLR 906 (975)
T ss_pred ccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHH
Confidence 9999999999999999999988532 2246778899999999999999888888999999988775553
No 32
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.72 E-value=0.075 Score=67.08 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000489 832 RLAKNKLERQLEDL---TWRVQLEKKLRVSTEEAKSVEISKLQKLLESLNLELDAAKLAT 888 (1463)
Q Consensus 832 ~~~~~~Le~ki~el---~~rl~~ek~l~~~~~eak~~E~~~Lq~~le~l~~eL~~~~~~~ 888 (1463)
+.++......+.+. ...+..+|++..++.+....|+..++.++++|+.+|+-+++..
T Consensus 296 qe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEm 355 (1243)
T KOG0971|consen 296 QEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEM 355 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333 3344456777777777777778888888888887776665543
No 33
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.55 E-value=0.033 Score=70.08 Aligned_cols=36 Identities=28% Similarity=0.269 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000489 828 AGALRLAKNKLERQLEDLTWRVQLEKKLRVSTEEAK 863 (1463)
Q Consensus 828 ~~~l~~~~~~Le~ki~el~~rl~~ek~l~~~~~eak 863 (1463)
..-+++++.++-.+..+|++++..++.-..+..+++
T Consensus 264 leqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~k 299 (1243)
T KOG0971|consen 264 LEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAK 299 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777776655444444333
No 34
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.075 Score=66.01 Aligned_cols=75 Identities=21% Similarity=0.292 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000489 922 IRKENAVLKSSLDSLEKKNSTLELELIKA-------QKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQ 994 (1463)
Q Consensus 922 L~~e~~~Lk~e~~~l~~~~~ele~e~~el-------~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lkq 994 (1463)
+...+..|+.+++.|+.++.++...+... +.+.+.+.+..+....++.+|+.++.++++++.+|--|...|..
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ 514 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNH 514 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 33444444444444444444444444333 23333333333334455555555555555555555555555444
Q ss_pred hh
Q 000489 995 KA 996 (1463)
Q Consensus 995 q~ 996 (1463)
++
T Consensus 515 ql 516 (1118)
T KOG1029|consen 515 QL 516 (1118)
T ss_pred HH
Confidence 43
No 35
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.23 E-value=1.5 Score=57.84 Aligned_cols=128 Identities=23% Similarity=0.274 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHH
Q 000489 864 SVEISKLQKLLESLNLELDAAKLATINECNKNAMLQNQLELSLKEKSALERELVAMAEIRKENAVLKSSLDSLEKKNSTL 943 (1463)
Q Consensus 864 ~~E~~~Lq~~le~l~~eL~~~~~~~~~e~~~~~~~~~ele~~~~e~~~l~e~~~~~~~L~~e~~~Lk~e~~~l~~~~~el 943 (1463)
..|++.+.+.+..+..+..+++.....-++...+.......+.+.+..+++.. ...+..+..+.+.+++.|..+++.+
T Consensus 336 d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~--~~~~~~~~~e~e~k~~~L~~evek~ 413 (1074)
T KOG0250|consen 336 DEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT--NNELGSELEERENKLEQLKKEVEKL 413 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554444443333444444333333333333332111 2334444444444444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000489 944 ELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 993 (1463)
Q Consensus 944 e~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lk 993 (1463)
+.....+..+.++..+++.+.+++....+.+...+...+++...+++.|+
T Consensus 414 e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 414 EEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444555555555555555554444444455555555544444444443
No 36
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.39 Score=60.01 Aligned_cols=24 Identities=17% Similarity=0.410 Sum_probs=15.2
Q ss_pred cCCcccccchhhhhhchHHHHHHH
Q 000489 1301 RRECCTFSNGEYVKSGLAELEKWI 1324 (1463)
Q Consensus 1301 r~~~cs~s~G~qIr~nls~Le~W~ 1324 (1463)
.++-.-|--|.-++-+=-+.--|+
T Consensus 1008 kKn~sGWWeGELqarGkkrq~GWF 1031 (1118)
T KOG1029|consen 1008 KKNASGWWEGELQARGKKRQIGWF 1031 (1118)
T ss_pred ecCCCccchhhHhhcCCccccccc
Confidence 456677777776666655555554
No 37
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=97.11 E-value=0.00024 Score=93.43 Aligned_cols=268 Identities=18% Similarity=0.108 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHHHHHcccCCeeEEEecCCCCCCCCCCChh-HHHHHhhccChhhHHHHHhhcCCCccchhhHHHHHhhh
Q 000489 549 VASRFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQKFENP-SILHQLRCGGVLEAVRISLAGYPTRRTYSDFVDRFGLL 627 (1463)
Q Consensus 549 v~~~f~~~l~~L~~~l~~t~~h~irCIkPN~~~~~~~fd~~-~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l 627 (1463)
++.+++-++......|-+..+|+.|||+||+.-.+..++.. .+..++...|..++....+.|+..+..|.+++.+++..
T Consensus 644 ~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1062)
T KOG4229|consen 644 VLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNS 723 (1062)
T ss_pred ccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccc
Confidence 44555567778888888889999999999999999888877 89999999999999999999999999999998877744
Q ss_pred hhhhcccchHHHHHHHHHHHHcccCccccccceeeecccccccccchhhhhhhh--------------------------
Q 000489 628 ALEFMDESYEEKALTEKILRKLKLENFQLGRTKVFLRAGQIGILDSRRAEVLDS-------------------------- 681 (1463)
Q Consensus 628 ~~~~~~~~~~~~~~~~~il~~~~~~~~~iGkTkVFlr~~~~~~Le~~r~~~~~~-------------------------- 681 (1463)
.-.......-.+.+|..++++-+.+.+..+.+.++.+.-.-..+.-.+.+...+
T Consensus 724 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~ 803 (1062)
T KOG4229|consen 724 EYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRKSKLE 803 (1062)
T ss_pred cccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccchhhhHHHHHhhccccCccccccchhhccch
Confidence 321111111235567778887777788888888887654333332222222111
Q ss_pred HHHHHHHHHhcchhhhhHHhh----hhhHHHHHHHhhcccccccccc---------------------------------
Q 000489 682 AARCIQHRWRTFIAHRNFVSI----RAAAFVLQAQCRGCLARKLYGV--------------------------------- 724 (1463)
Q Consensus 682 aa~~IQ~~~R~~~~Rk~~~~~----r~a~i~iQ~~~Rg~laRk~~~~--------------------------------- 724 (1463)
.+..||.-++....+..+... -...+.+|..|-|...+.....
T Consensus 804 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~~v~~~~~~ 883 (1062)
T KOG4229|consen 804 SYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPETVDTVADEEFS 883 (1062)
T ss_pred hhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccCCccchhhchhhee
Confidence 223334333333222222111 1245566666655443221110
Q ss_pred ---------------------cc--------chhh---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-
Q 000489 725 ---------------------KR--------ETAA---AISLQKYVRRWLSRHAFLKLSLAAIVIQSNIRGFSIRERFL- 771 (1463)
Q Consensus 725 ---------------------~r--------~~~a---ai~IQ~~~R~~~~Rk~y~~~r~aai~iQs~~Rg~~aR~~~~- 771 (1463)
.| ++.. +...|++++....++.+.++....+.+| ++++..|+...
T Consensus 884 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~ 961 (1062)
T KOG4229|consen 884 TLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPV 961 (1062)
T ss_pred ecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCcc
Confidence 00 0001 3345777777777888888888888888 77777766433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 000489 772 HRKRHKAATVIQACWRMCKFRSAFQHHQTSIIAIQCRWRQKLAKREL 818 (1463)
Q Consensus 772 ~~r~~~aa~~IQ~~~R~~~~r~~y~~~~~a~v~iQ~~~R~~~arr~~ 818 (1463)
......+++-+|..|+.+..+..+...+++.+.+|..+++..-++..
T Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1008 (1062)
T KOG4229|consen 962 AGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMIF 1008 (1062)
T ss_pred hhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhhH
Confidence 23345788888999999999999988888988899888776655444
No 38
>PRK11637 AmiB activator; Provisional
Probab=97.06 E-value=0.18 Score=62.63 Aligned_cols=13 Identities=15% Similarity=0.304 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 000489 868 SKLQKLLESLNLE 880 (1463)
Q Consensus 868 ~~Lq~~le~l~~e 880 (1463)
.+++.+++.++.+
T Consensus 106 ~~l~~eI~~~q~~ 118 (428)
T PRK11637 106 DELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 39
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=97.01 E-value=0.0041 Score=76.16 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------h
Q 000489 729 AAAISLQKYVRRWLSRHAFLKLSLAAIVIQSNIRGFSIRERFLHRKRHKAATVIQACWRMCKFRSAFQH----------H 798 (1463)
Q Consensus 729 ~aai~IQ~~~R~~~~Rk~y~~~r~aai~iQs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~y~~----------~ 798 (1463)
.-++.||+.||||.+|.+|++++.+++.|+ |+|.+..+ ..+..||+.+|++..++.|.+ +
T Consensus 697 ~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k---------s~v~el~~~~rg~k~~r~ygk~~~WP~pP~~L 766 (1001)
T KOG0164|consen 697 SLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLK---------SYVQELQRRFRGAKQMRDYGKSIRWPAPPLVL 766 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHhhhhccccCCCCCCCCCchHH
Confidence 467889999999999999999999999999 77744322 455678999999999999865 3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 000489 799 QTSIIAIQCRWRQKLAKREL 818 (1463)
Q Consensus 799 ~~a~v~iQ~~~R~~~arr~~ 818 (1463)
+.+.-.+|..+-+|.|.+-+
T Consensus 767 r~~~~~L~~lf~rwra~~~~ 786 (1001)
T KOG0164|consen 767 REFEELLRELFIRWRAWQIL 786 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444444433
No 40
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.99 E-value=1 Score=56.21 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000489 734 LQKYVRRWLSRHAFLKLSLAAIVIQSNIRGFSIRERFLHRKRHKAATVIQACWRMCKFRSAFQHHQ 799 (1463)
Q Consensus 734 IQ~~~R~~~~Rk~y~~~r~aai~iQs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~y~~~~ 799 (1463)
|=+.+.-|+.+.+|.+...++..+=.. +.+. .-+..+.+++|+..|||++|++++...
T Consensus 779 lv~kVn~WLv~sRWkk~q~~a~sVIKL------kNkI--~yRae~v~k~Q~~~Rg~L~rkr~~~ri 836 (1259)
T KOG0163|consen 779 LVAKVNKWLVRSRWKKSQYGALSVIKL------KNKI--IYRAECVLKAQRIARGYLARKRHRPRI 836 (1259)
T ss_pred HHHHHHHHHHHhHHHHhhhhhhheeeh------hhHH--HHHHHHHHHHHHHHHHHHHHhhhchHH
Confidence 444567888888887765543322110 1111 122456778899999999988887654
No 41
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.98 E-value=0.36 Score=62.81 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhh
Q 000489 974 NMQSLEEKLSHLEDENHVLRQKAL 997 (1463)
Q Consensus 974 e~~~Lee~l~~Le~E~~~Lkqq~~ 997 (1463)
+++-++..+.+-+.|+..|++++.
T Consensus 630 q~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 630 QLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555666666666543
No 42
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.96 E-value=2.3 Score=59.99 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=15.0
Q ss_pred EEEEcCCCCCCchHHHHHH
Q 000489 150 SILVSGESGAGKTETTKLI 168 (1463)
Q Consensus 150 sIiisGeSGaGKTe~~k~~ 168 (1463)
..+|+|++|||||...-.|
T Consensus 25 ~~~i~G~NGsGKS~ildAi 43 (1164)
T TIGR02169 25 FTVISGPNGSGKSNIGDAI 43 (1164)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5688999999999874433
No 43
>PRK11637 AmiB activator; Provisional
Probab=96.73 E-value=0.49 Score=58.83 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 000489 867 ISKLQKLLESLN 878 (1463)
Q Consensus 867 ~~~Lq~~le~l~ 878 (1463)
+.+++.+++..+
T Consensus 112 I~~~q~~l~~~~ 123 (428)
T PRK11637 112 IAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 44
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.71 E-value=4 Score=54.21 Aligned_cols=49 Identities=22% Similarity=0.188 Sum_probs=37.0
Q ss_pred HHhhHHHHHHHHHHhhcccCccCHHHHHHccC---CCCCHHHHHHHHhcCccCCC
Q 000489 1336 WHELNYIRQAVGFLVIHQKRKKSLDEIRQDLC---PALTVRQIYRICTMYWDDKY 1387 (1463)
Q Consensus 1336 ~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~c---~~Ls~~Ql~kIL~~Y~~d~~ 1387 (1463)
.+.|.|..+-+.|-|.| ++.++..| ..+- -.||+.=|.=.|.+|+|..+
T Consensus 1169 VDslDPFseGV~FSVrP--pKKSWK~I-~NLSGGEKTLSSLALVFALH~YkPTPl 1220 (1293)
T KOG0996|consen 1169 VDSLDPFSEGVMFSVRP--PKKSWKNI-SNLSGGEKTLSSLALVFALHHYKPTPL 1220 (1293)
T ss_pred eccCCCcccCceEEeeC--chhhhhhc-ccCCcchhHHHHHHHHHHHHccCCCCc
Confidence 56788888888888887 56777666 2332 47888899999999998644
No 45
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.68 E-value=0.21 Score=53.33 Aligned_cols=74 Identities=20% Similarity=0.326 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 000489 922 IRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQK 995 (1463)
Q Consensus 922 L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lkqq 995 (1463)
+..|.+.|+.....+++....+-.+...++++.+.+..++..++.+...+..+.+.+..+..+|-.++..|+.+
T Consensus 65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Q 138 (193)
T PF14662_consen 65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQ 138 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444444444444444444444433
No 46
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.67 E-value=0.0021 Score=43.67 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000489 777 KAATVIQACWRMCKFRSAFQ 796 (1463)
Q Consensus 777 ~aa~~IQ~~~R~~~~r~~y~ 796 (1463)
+||+.||++||||++|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 46666666666666666653
No 47
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.65 E-value=0.29 Score=50.95 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000489 962 REVEQKCSSLQQNMQSLEEKLSHLED 987 (1463)
Q Consensus 962 ~~~e~~i~~L~~e~~~Lee~l~~Le~ 987 (1463)
...+.+...|..+....+.++..++.
T Consensus 111 e~~eRkv~~le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 111 EHFERKVKALEQERDQWEEKYEELEE 136 (143)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 48
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.61 E-value=3 Score=54.68 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=33.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 000489 937 EKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQK 995 (1463)
Q Consensus 937 ~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lkqq 995 (1463)
+++.+.|..+..++-.+.++....+++++.++.+-+..++..+.++..|++++..+...
T Consensus 1688 r~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~ 1746 (1758)
T KOG0994|consen 1688 RERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDH 1746 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33444444444444444445555566666666666666666666677777776655443
No 49
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.57 E-value=1.5 Score=56.94 Aligned_cols=21 Identities=38% Similarity=0.792 Sum_probs=15.7
Q ss_pred EcCCCCCCchHHHHHHHHHHHHhhc
Q 000489 153 VSGESGAGKTETTKLIMQYLTFVGG 177 (1463)
Q Consensus 153 isGeSGaGKTe~~k~~~~yla~~~~ 177 (1463)
|+|-.||||+- |+.-++++-|
T Consensus 30 ITGlNGSGKSN----ILDsICFvLG 50 (1174)
T KOG0933|consen 30 ITGLNGSGKSN----ILDSICFVLG 50 (1174)
T ss_pred hhcCCCCCchH----HHHHHHHHHc
Confidence 48999999995 5666666644
No 50
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.57 E-value=3 Score=58.95 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000489 961 LREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 993 (1463)
Q Consensus 961 l~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lk 993 (1463)
+...+.+..++..++..+++++..++.+.+.++
T Consensus 444 LenF~aklee~e~qL~elE~kL~~lea~leql~ 476 (1486)
T PRK04863 444 LEEFQAKEQEATEELLSLEQKLSVAQAAHSQFE 476 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444333
No 51
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.48 E-value=0.054 Score=72.03 Aligned_cols=18 Identities=22% Similarity=0.095 Sum_probs=13.4
Q ss_pred cchhhhhhchHHHHHHHh
Q 000489 1308 SNGEYVKSGLAELEKWIV 1325 (1463)
Q Consensus 1308 s~G~qIr~nls~Le~W~~ 1325 (1463)
..+.-+.-++..||+|=.
T Consensus 1192 ~lk~~~i~~l~eLE~~g~ 1209 (1401)
T KOG2128|consen 1192 ELKNSIIKDLHELEQLGR 1209 (1401)
T ss_pred HHHHHHHHhHHHHHHhcc
Confidence 455667778899999964
No 52
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.42 E-value=5.4 Score=52.19 Aligned_cols=11 Identities=36% Similarity=0.419 Sum_probs=7.9
Q ss_pred ccccccceeee
Q 000489 653 NFQLGRTKVFL 663 (1463)
Q Consensus 653 ~~~iGkTkVFl 663 (1463)
.|.||.|-|+=
T Consensus 619 efvFG~tlVc~ 629 (1174)
T KOG0933|consen 619 EFVFGSTLVCD 629 (1174)
T ss_pred HHHhCceEEec
Confidence 47888887764
No 53
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.38 E-value=0.0029 Score=74.79 Aligned_cols=57 Identities=30% Similarity=0.380 Sum_probs=44.0
Q ss_pred eeCCCCCCCCCCCHHHHHHhhCCCCCCCChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHH
Q 000489 100 AVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRAMISEHQSQSILVSGESGAGKTETT 165 (1463)
Q Consensus 100 aiNP~~~l~~ly~~~~~~~y~~~~~~~l~PHi~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~ 165 (1463)
+||||...| |+.....-++. +.+||-|-|. +.-|..-..||+||++||.|||||+-.
T Consensus 23 ~~Npf~~~p--~s~rY~~ilk~--R~~LPvw~~k-----~~F~~~l~~nQ~~v~vGetgsGKttQi 79 (699)
T KOG0925|consen 23 AINPFNGKP--YSQRYYDILKK--RRELPVWEQK-----EEFLKLLLNNQIIVLVGETGSGKTTQI 79 (699)
T ss_pred hcCCCCCCc--CcHHHHHHHHH--HhcCchHHhH-----HHHHHHHhcCceEEEEecCCCCccccC
Confidence 399999998 88876665543 4578866543 556777789999999999999999753
No 54
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.35 E-value=0.65 Score=48.40 Aligned_cols=21 Identities=43% Similarity=0.452 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000489 865 VEISKLQKLLESLNLELDAAK 885 (1463)
Q Consensus 865 ~E~~~Lq~~le~l~~eL~~~~ 885 (1463)
.++..|++++..++.+++.+.
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~ 55 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLE 55 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444433
No 55
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.33 E-value=1.3 Score=55.22 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=10.4
Q ss_pred HHHHHhhcCCCccchhhH
Q 000489 603 AVRISLAGYPTRRTYSDF 620 (1463)
Q Consensus 603 ~iri~~~gyp~r~~~~~F 620 (1463)
.|-|.+.||.+-..|.-|
T Consensus 39 WIGiFKVGw~s~rdY~Tf 56 (546)
T PF07888_consen 39 WIGIFKVGWSSTRDYYTF 56 (546)
T ss_pred eeEEeecCCCchhheeeE
Confidence 455666777665555444
No 56
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.30 E-value=0.95 Score=58.59 Aligned_cols=13 Identities=31% Similarity=0.371 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 000489 838 LERQLEDLTWRVQ 850 (1463)
Q Consensus 838 Le~ki~el~~rl~ 850 (1463)
|+.+++.|..++.
T Consensus 413 Ls~k~e~Leeri~ 425 (1195)
T KOG4643|consen 413 LSKKHEILEERIN 425 (1195)
T ss_pred HhHHHHHHHHHHH
Confidence 3444444444433
No 57
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.30 E-value=1.7 Score=51.96 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=18.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000489 935 SLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLE 979 (1463)
Q Consensus 935 ~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Le 979 (1463)
+...++++.++++.+++.+...+..++++...++.+++.++..++
T Consensus 220 ~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 220 EQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344444444444444444444444
No 58
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.28 E-value=0.0047 Score=42.02 Aligned_cols=19 Identities=42% Similarity=0.704 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 000489 729 AAAISLQKYVRRWLSRHAF 747 (1463)
Q Consensus 729 ~aai~IQ~~~R~~~~Rk~y 747 (1463)
.||+.||+.||||++|+.|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3666677777777776665
No 59
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.21 E-value=10 Score=53.27 Aligned_cols=37 Identities=32% Similarity=0.544 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000489 950 AQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLE 986 (1463)
Q Consensus 950 l~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le 986 (1463)
++...+++...+.+++.++..++....+++.+++.++
T Consensus 451 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 487 (1163)
T COG1196 451 LEEQLEELRDRLKELERELAELQEELQRLEKELSSLE 487 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444333333
No 60
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.19 E-value=1.7 Score=56.02 Aligned_cols=14 Identities=43% Similarity=0.641 Sum_probs=7.2
Q ss_pred hhhHHHHHhhcCCC
Q 000489 600 VLEAVRISLAGYPT 613 (1463)
Q Consensus 600 vle~iri~~~gyp~ 613 (1463)
++++|...-.|-|.
T Consensus 43 ll~aI~~~l~G~~~ 56 (562)
T PHA02562 43 MLEALTFALFGKPF 56 (562)
T ss_pred HHHHHHHHHcCCCc
Confidence 45555555445443
No 61
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.16 E-value=0.91 Score=58.13 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhcccCccCHHHH-HHccCCCCCHHHHHHHH
Q 000489 1340 NYIRQAVGFLVIHQKRKKSLDEI-RQDLCPALTVRQIYRIC 1379 (1463)
Q Consensus 1340 ~~l~Qa~~lLq~~kk~~~~~~~i-~~~~c~~Ls~~Ql~kIL 1379 (1463)
..+++|++-++.. ....+++ ++.-=-+=+++||+.-.
T Consensus 850 tvLVeaAdkvV~~---~gkfEeLIVas~EIAAsTaQLVaAS 887 (980)
T KOG0980|consen 850 TVLVEAADKVVTG---TGKFEELIVASQEIAASTAQLVAAS 887 (980)
T ss_pred HHHHHHhhhHhcC---CCCcHHHHHhhhHHHHHHHHHHHHH
Confidence 4566777777765 3334432 21111155667776543
No 62
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.06 E-value=6.4 Score=51.56 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=45.4
Q ss_pred HHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000489 925 ENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVL 992 (1463)
Q Consensus 925 e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~L 992 (1463)
+.+.|-..+..++++...||.-+....+-+.+|-.-|-++..+++-++..+...+.+|.+|+..+..+
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666666666666777777777777777777777777777777766544
No 63
>PRK03918 chromosome segregation protein; Provisional
Probab=96.04 E-value=2.1 Score=58.49 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=14.7
Q ss_pred EEEcCCCCCCchHHHHHH
Q 000489 151 ILVSGESGAGKTETTKLI 168 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~ 168 (1463)
.+|+|++|||||+....|
T Consensus 26 ~~i~G~nG~GKStil~ai 43 (880)
T PRK03918 26 NLIIGQNGSGKSSILEAI 43 (880)
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 578999999999876533
No 64
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.04 E-value=12 Score=52.57 Aligned_cols=59 Identities=27% Similarity=0.438 Sum_probs=25.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 000489 937 EKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQK 995 (1463)
Q Consensus 937 ~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lkqq 995 (1463)
+..++.++.++..+..+...+..++.+++.+...++.+...+..++..++.....++..
T Consensus 403 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 461 (1163)
T COG1196 403 KREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDR 461 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444444444444444444455555544444433
No 65
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.02 E-value=9.2 Score=50.96 Aligned_cols=14 Identities=21% Similarity=0.245 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHH
Q 000489 730 AAISLQKYVRRWLS 743 (1463)
Q Consensus 730 aai~IQ~~~R~~~~ 743 (1463)
+.+.=|-.-|.|+.
T Consensus 179 ~~~lsQD~aR~FL~ 192 (1074)
T KOG0250|consen 179 MFVLSQDAARSFLA 192 (1074)
T ss_pred chhhcHHHHHHHHh
Confidence 45556667777665
No 66
>PRK02224 chromosome segregation protein; Provisional
Probab=95.99 E-value=4.3 Score=55.46 Aligned_cols=11 Identities=18% Similarity=0.172 Sum_probs=4.5
Q ss_pred cCCHHHHHHHH
Q 000489 1391 SVSNEVVAQMR 1401 (1463)
Q Consensus 1391 ~v~~~~i~~v~ 1401 (1463)
.+++.-...+.
T Consensus 823 ~lD~~~~~~~~ 833 (880)
T PRK02224 823 FLDSGHVSQLV 833 (880)
T ss_pred cCCHHHHHHHH
Confidence 34444444443
No 67
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.93 E-value=14 Score=52.26 Aligned_cols=8 Identities=0% Similarity=0.123 Sum_probs=3.4
Q ss_pred HHHHHHcc
Q 000489 643 EKILRKLK 650 (1463)
Q Consensus 643 ~~il~~~~ 650 (1463)
..+|..++
T Consensus 125 ~~~l~~~~ 132 (1179)
T TIGR02168 125 QDLFLDTG 132 (1179)
T ss_pred HHHHhccC
Confidence 34444443
No 68
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.88 E-value=2.7 Score=54.30 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhHHHHH
Q 000489 922 IRKENAVLKSSLDSLE 937 (1463)
Q Consensus 922 L~~e~~~Lk~e~~~l~ 937 (1463)
+..+...++.++..+.
T Consensus 304 l~d~i~~l~~~l~~l~ 319 (562)
T PHA02562 304 IKDKLKELQHSLEKLD 319 (562)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 69
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=95.77 E-value=0.14 Score=68.24 Aligned_cols=90 Identities=22% Similarity=0.222 Sum_probs=49.5
Q ss_pred HHHhhcccccccccccc-----chhhHHHHHHHHHHHHH---H-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 000489 710 QAQCRGCLARKLYGVKR-----ETAAAISLQKYVRRWLS---R-HAFLKLSLAAIVIQSNIRGFSIRERFLHRKR----- 775 (1463)
Q Consensus 710 Q~~~Rg~laRk~~~~~r-----~~~aai~IQ~~~R~~~~---R-k~y~~~r~aai~iQs~~Rg~~aR~~~~~~r~----- 775 (1463)
|+..||+..|..+.... ..-...-||..|||++. + .........++.+|++.||+.+|+.+..+.+
T Consensus 542 qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~ 621 (1401)
T KOG2128|consen 542 QASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDN 621 (1401)
T ss_pred hhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 55566655554443321 23345556666666652 1 1122334566667777777777765543332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 000489 776 HKAATVIQACWRMCKFRSAFQHHQ 799 (1463)
Q Consensus 776 ~~aa~~IQ~~~R~~~~r~~y~~~~ 799 (1463)
..+++.||++.|....|..|+.+.
T Consensus 622 ~~~~i~iqs~~r~f~~r~~y~~L~ 645 (1401)
T KOG2128|consen 622 MTKIIKIQSKIRKFPNRKDYKLLF 645 (1401)
T ss_pred hhhHHHHHHHHHhcccchHHHHHh
Confidence 455666666666666666666553
No 70
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.62 E-value=13 Score=49.72 Aligned_cols=37 Identities=11% Similarity=0.230 Sum_probs=17.7
Q ss_pred CeeEEEecCCCCCCCCCCChhHH-----HHHhhccChhhHHH
Q 000489 569 PHYIRCVKPNSLNRPQKFENPSI-----LHQLRCGGVLEAVR 605 (1463)
Q Consensus 569 ~h~irCIkPN~~~~~~~fd~~~v-----~~QLr~~gvle~ir 605 (1463)
|.|---|=||-..+++..|.-+. .+++|+.-|-+.|.
T Consensus 108 ksFtaIvGPNGSGKSNVIDsmLFVFGfRA~kiR~~klS~LIh 149 (1293)
T KOG0996|consen 108 KSFTAIVGPNGSGKSNVIDSMLFVFGFRASKIRSKKLSALIH 149 (1293)
T ss_pred CCceeeECCCCCCchHHHHHHHHHhhhhHhHHhHHHHHHHHh
Confidence 33434455666555555554332 24555555444443
No 71
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.59 E-value=4.3 Score=52.27 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHH
Q 000489 919 MAEIRKENAVLKSSLDSLEKKNSTLELE 946 (1463)
Q Consensus 919 ~~~L~~e~~~Lk~e~~~l~~~~~ele~e 946 (1463)
+......|..|+.++.++...+-.+..+
T Consensus 155 ~SRAlsQN~eLK~QL~Elq~~Fv~ltne 182 (617)
T PF15070_consen 155 ASRALSQNRELKEQLAELQDAFVKLTNE 182 (617)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455666666666655544444433
No 72
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.54 E-value=2.9 Score=47.03 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 000489 870 LQKLLESLNLEL 881 (1463)
Q Consensus 870 Lq~~le~l~~eL 881 (1463)
++.++-.++.++
T Consensus 57 le~qv~~~e~ei 68 (239)
T COG1579 57 LENQVSQLESEI 68 (239)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 73
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.42 E-value=7.5 Score=45.61 Aligned_cols=9 Identities=33% Similarity=0.342 Sum_probs=4.2
Q ss_pred ccccCCccc
Q 000489 1225 SCIQVPKTA 1233 (1463)
Q Consensus 1225 ~~i~~~~~~ 1233 (1463)
.+|-.+++.
T Consensus 470 ~aiAaedt~ 478 (499)
T COG4372 470 SAIAAEDTV 478 (499)
T ss_pred cCCCCCCCc
Confidence 355444444
No 74
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.42 E-value=20 Score=50.57 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=3.7
Q ss_pred cCCCCCCCC
Q 000489 576 KPNSLNRPQ 584 (1463)
Q Consensus 576 kPN~~~~~~ 584 (1463)
=||-..+..
T Consensus 30 G~NGsGKS~ 38 (1179)
T TIGR02168 30 GPNGCGKSN 38 (1179)
T ss_pred CCCCCChhH
Confidence 344444333
No 75
>PRK09039 hypothetical protein; Validated
Probab=95.36 E-value=3.2 Score=49.91 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000489 919 MAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREV 964 (1463)
Q Consensus 919 ~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~ 964 (1463)
..+...+...|+.+++.++.++..++.++...+.+..+...++.++
T Consensus 132 ~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 132 SARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444333333333333
No 76
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.34 E-value=2.8 Score=43.10 Aligned_cols=33 Identities=21% Similarity=0.504 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 000489 964 VEQKCSSLQQNMQSLEEKLSHLEDENHVLRQKA 996 (1463)
Q Consensus 964 ~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lkqq~ 996 (1463)
.+.+...|..++..++.++.+|..+|..|-.++
T Consensus 96 w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 96 WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888888888888888887765
No 77
>PRK09039 hypothetical protein; Validated
Probab=95.33 E-value=1.2 Score=53.58 Aligned_cols=67 Identities=13% Similarity=0.104 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000489 918 AMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSH 984 (1463)
Q Consensus 918 ~~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~ 984 (1463)
+...+..+....+....+...++..+..++..++.+...+...+...+.+..+.+..++.++.++..
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555555555555555555555555555555443
No 78
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.32 E-value=6.3 Score=47.43 Aligned_cols=46 Identities=20% Similarity=0.168 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000489 867 ISKLQKLLESLNLELDAAKLATINECNKNAMLQNQLELSLKEKSAL 912 (1463)
Q Consensus 867 ~~~Lq~~le~l~~eL~~~~~~~~~e~~~~~~~~~ele~~~~e~~~l 912 (1463)
...+.+.+..|+.-+...+..+++.+.+...++-+++........|
T Consensus 385 Knd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~L 430 (527)
T PF15066_consen 385 KNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHL 430 (527)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHH
Confidence 3444444555555454444444444455555555555555444444
No 79
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.19 E-value=6.8 Score=46.32 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000489 957 TIEKLREVEQKCSSLQQNMQSLEE 980 (1463)
Q Consensus 957 l~~el~~~e~~i~~L~~e~~~Lee 980 (1463)
+...+++...++.+++.++..++.
T Consensus 237 l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 237 LESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444433
No 80
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.17 E-value=6.2 Score=43.59 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHH
Q 000489 920 AEIRKENAVLKSSLDSLEKKNSTLELELIKAQK 952 (1463)
Q Consensus 920 ~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~ 952 (1463)
..|+.++..++...+++.+.+.+|++....++.
T Consensus 94 s~Leddlsqt~aikeql~kyiReLEQaNDdLEr 126 (333)
T KOG1853|consen 94 SQLEDDLSQTHAIKEQLRKYIRELEQANDDLER 126 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 334444444444455555555555544444433
No 81
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.07 E-value=9.6 Score=49.95 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=11.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000489 936 LEKKNSTLELELIKAQKENNNTIEKL 961 (1463)
Q Consensus 936 l~~~~~ele~e~~el~~~~~~l~~el 961 (1463)
+.+++++++..+..+++++..+.+++
T Consensus 528 ~~~k~eeLe~~l~~lE~ENa~LlkqI 553 (1195)
T KOG4643|consen 528 LSNKLEELEELLGNLEEENAHLLKQI 553 (1195)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 82
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.03 E-value=15 Score=48.76 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=24.3
Q ss_pred HHhhcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhh
Q 000489 83 RRYALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYK 120 (1463)
Q Consensus 83 ~R~~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~ 120 (1463)
.||..-.+-|---.|+=++-|--.+++-|++++.+.-+
T Consensus 192 SrYS~~~PstgGEVifrvl~P~~~iedPYs~~IQ~~LK 229 (1758)
T KOG0994|consen 192 SRYSDPEPSTGGEVIFRVLDPAIDIEDPYSAKIQELLK 229 (1758)
T ss_pred cccCCCCCCCCCeEEEEecCCCCCCCCchhHHHHHHhh
Confidence 35555555333223566788888888889888877554
No 83
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.95 E-value=4.9 Score=48.96 Aligned_cols=11 Identities=36% Similarity=0.655 Sum_probs=4.3
Q ss_pred HhHHHHHHHHH
Q 000489 983 SHLEDENHVLR 993 (1463)
Q Consensus 983 ~~Le~E~~~Lk 993 (1463)
..++.+...|.
T Consensus 204 kRleEe~elln 214 (772)
T KOG0999|consen 204 KRLEEETELLN 214 (772)
T ss_pred HHHHHHHHHHH
Confidence 33444433333
No 84
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.87 E-value=0.026 Score=40.61 Aligned_cols=21 Identities=38% Similarity=0.645 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000489 776 HKAATVIQACWRMCKFRSAFQ 796 (1463)
Q Consensus 776 ~~aa~~IQ~~~R~~~~r~~y~ 796 (1463)
.++|+.||+.||||++|+.|+
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 467788888888888887773
No 85
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.83 E-value=5.7 Score=56.59 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=16.3
Q ss_pred eEEEEcCCCCCCchHHHHHH
Q 000489 149 QSILVSGESGAGKTETTKLI 168 (1463)
Q Consensus 149 QsIiisGeSGaGKTe~~k~~ 168 (1463)
...+|+|++|||||+....|
T Consensus 29 ~~~~I~G~NGaGKTTil~ai 48 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECL 48 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 36799999999999776554
No 86
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.81 E-value=9.4 Score=43.48 Aligned_cols=12 Identities=42% Similarity=0.603 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 000489 874 LESLNLELDAAK 885 (1463)
Q Consensus 874 le~l~~eL~~~~ 885 (1463)
++.++.++..+.
T Consensus 94 i~~lE~~l~ea~ 105 (237)
T PF00261_consen 94 IEELEQQLKEAK 105 (237)
T ss_dssp HHHCHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344443333
No 87
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.76 E-value=15 Score=45.68 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=12.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHH
Q 000489 792 RSAFQHHQTSIIAIQCRWRQKLAK 815 (1463)
Q Consensus 792 r~~y~~~~~a~v~iQ~~~R~~~ar 815 (1463)
|..+..++.-+...|++.-++..+
T Consensus 265 re~~~~L~~D~nK~~~y~~~~~~k 288 (581)
T KOG0995|consen 265 REKKARLQDDVNKFQAYVSQMKSK 288 (581)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhh
Confidence 444555555555666555544444
No 88
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.64 E-value=8.9 Score=42.43 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q 000489 970 SLQQNMQSLEEKLSHLEDENHV 991 (1463)
Q Consensus 970 ~L~~e~~~Lee~l~~Le~E~~~ 991 (1463)
.|-.++++|.++-..|..|+.+
T Consensus 161 ~llesvqRLkdEardlrqelav 182 (333)
T KOG1853|consen 161 VLLESVQRLKDEARDLRQELAV 182 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555665555555555543
No 89
>PRK03918 chromosome segregation protein; Provisional
Probab=94.64 E-value=20 Score=49.07 Aligned_cols=15 Identities=13% Similarity=0.271 Sum_probs=8.3
Q ss_pred cCCHHHHHHHHHHhh
Q 000489 1391 SVSNEVVAQMREILN 1405 (1463)
Q Consensus 1391 ~v~~~~i~~v~~~~~ 1405 (1463)
.+++.....+...+.
T Consensus 824 ~lD~~~~~~l~~~l~ 838 (880)
T PRK03918 824 FLDEERRRKLVDIME 838 (880)
T ss_pred ccCHHHHHHHHHHHH
Confidence 466665555555444
No 90
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.59 E-value=13 Score=44.05 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 000489 942 TLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQKA 996 (1463)
Q Consensus 942 ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lkqq~ 996 (1463)
+++.++.--....+++...+...++-....+.+++.+-.++..|+.|+..++.+-
T Consensus 213 ~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~ 267 (309)
T PF09728_consen 213 ELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKW 267 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444556666666777778888888999889999999998887653
No 91
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.58 E-value=13 Score=43.86 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000489 960 KLREVEQKCSSLQQNMQSLEEKLSHLE 986 (1463)
Q Consensus 960 el~~~e~~i~~L~~e~~~Lee~l~~Le 986 (1463)
.+.+-+.+.+.|+.+...+|.+..++|
T Consensus 253 ~I~~re~~lq~lEt~q~~leqeva~le 279 (499)
T COG4372 253 QIRERERQLQRLETAQARLEQEVAQLE 279 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555444444
No 92
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=94.54 E-value=0.081 Score=64.78 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 131 VFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 131 i~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
++...-.|...+..-++.|.+.|.|.||+|||+..+.|+.+.
T Consensus 138 ~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 138 PLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred ccccceeeccceEeEecceEEEEECCCCCCccHHHHHHhccc
Confidence 344455566677667899999999999999999988776543
No 93
>PTZ00014 myosin-A; Provisional
Probab=94.51 E-value=0.09 Score=69.47 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 000489 776 HKAATVIQACWRMCKFRSAFQHHQTSIIAIQCRWRQKLAKRE 817 (1463)
Q Consensus 776 ~~aa~~IQ~~~R~~~~r~~y~~~~~a~v~iQ~~~R~~~arr~ 817 (1463)
...++.||++||+|++|++|++.+.+++.||+.||+++++++
T Consensus 777 ~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 777 EPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356889999999999999999999999999999999998865
No 94
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.51 E-value=3.8 Score=46.00 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 000489 965 EQKCSSLQQNMQSLEEKLSHLEDENHVLRQK 995 (1463)
Q Consensus 965 e~~i~~L~~e~~~Lee~l~~Le~E~~~Lkqq 995 (1463)
..++.+|++.+..--++...|+.|++.|.-+
T Consensus 161 ~sk~e~L~ekynkeveerkrle~e~k~lq~k 191 (307)
T PF10481_consen 161 DSKYEELQEKYNKEVEERKRLEAEVKALQAK 191 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 4566677766666666677888888888754
No 95
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.48 E-value=16 Score=44.51 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 000489 965 EQKCSSLQQNMQSLEEKLSHLE 986 (1463)
Q Consensus 965 e~~i~~L~~e~~~Lee~l~~Le 986 (1463)
+++..+|..+-.+|+..+..++
T Consensus 223 q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 223 QKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 96
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.47 E-value=8.6 Score=41.51 Aligned_cols=103 Identities=21% Similarity=0.228 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHH
Q 000489 891 ECNKNAMLQNQLELSLKEKSALERELVAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENN-------NTIEKLRE 963 (1463)
Q Consensus 891 e~~~~~~~~~ele~~~~e~~~l~e~~~~~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~-------~l~~el~~ 963 (1463)
.++....+..+...++++...+ ..++..|..+|.++..+.+.+.++..+|..+...++.+.- .....+.+
T Consensus 79 lEE~~~~L~aq~rqlEkE~q~L---~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e 155 (193)
T PF14662_consen 79 LEEENRSLLAQARQLEKEQQSL---VAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSE 155 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333 3445566666666666666666655555444444433321 11222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 000489 964 VEQKCSSLQQNMQSLEEKLSHLEDENHVLRQKA 996 (1463)
Q Consensus 964 ~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lkqq~ 996 (1463)
....+..|...++....-...|..+...|.+++
T Consensus 156 ~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 156 RTQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333344555555555444
No 97
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.46 E-value=7.7 Score=42.95 Aligned_cols=57 Identities=26% Similarity=0.230 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHH
Q 000489 900 NQLELSLKEKSALERELVAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNN 956 (1463)
Q Consensus 900 ~ele~~~~e~~~l~e~~~~~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~ 956 (1463)
.++....++...+.....+...++++...|+-+.+.+..++..++.+..++......
T Consensus 76 k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 76 KQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444555555555555555555555555555555555444433
No 98
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.46 E-value=7 Score=51.02 Aligned_cols=38 Identities=26% Similarity=0.453 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000489 955 NNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVL 992 (1463)
Q Consensus 955 ~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~L 992 (1463)
.+...+|...+-+++.+.++-..+..++..++.....|
T Consensus 338 ~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l 375 (1200)
T KOG0964|consen 338 EEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDL 375 (1200)
T ss_pred HHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555555555544443
No 99
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.24 E-value=7.8 Score=40.11 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000489 866 EISKLQKLLESLNLELDAAK 885 (1463)
Q Consensus 866 E~~~Lq~~le~l~~eL~~~~ 885 (1463)
+...|+.+++.++.+|+...
T Consensus 18 e~dsle~~v~~LEreLe~~q 37 (140)
T PF10473_consen 18 EKDSLEDHVESLERELEMSQ 37 (140)
T ss_pred hHhhHHHHHHHHHHHHHHHH
Confidence 34556666666666665444
No 100
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.18 E-value=0.033 Score=55.93 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.4
Q ss_pred EEEEcCCCCCCchHHHHHHHHHH
Q 000489 150 SILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 150 sIiisGeSGaGKTe~~k~~~~yl 172 (1463)
.|+|+|.||||||+.++.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999986
No 101
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.13 E-value=13 Score=42.31 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=23.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000489 937 EKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENH 990 (1463)
Q Consensus 937 ~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~ 990 (1463)
..++..++..+.+++...+.....+..++..++.|..++....++...++.++.
T Consensus 175 e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 175 EEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444434444444444444444444444444444444443
No 102
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.13 E-value=11 Score=43.61 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000489 864 SVEISKLQKLLESLNLELDAAKL 886 (1463)
Q Consensus 864 ~~E~~~Lq~~le~l~~eL~~~~~ 886 (1463)
..|.++|+.+-+.|..+|.....
T Consensus 98 q~e~~qL~~qnqkL~nqL~~~~~ 120 (401)
T PF06785_consen 98 QQESEQLQSQNQKLKNQLFHVRE 120 (401)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 34555566666666655554443
No 103
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.12 E-value=6.5 Score=40.70 Aligned_cols=56 Identities=32% Similarity=0.372 Sum_probs=20.5
Q ss_pred HhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000489 931 SSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLE 986 (1463)
Q Consensus 931 ~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le 986 (1463)
.+++.+...+..++.++..+..++..+...+.....++..|......+...+...+
T Consensus 59 ~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E 114 (140)
T PF10473_consen 59 EELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKE 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333
No 104
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.11 E-value=0.049 Score=39.16 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 000489 729 AAAISLQKYVRRWLSRHAF 747 (1463)
Q Consensus 729 ~aai~IQ~~~R~~~~Rk~y 747 (1463)
.+|+.||+.||||++|+.|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4677777777777777766
No 105
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.08 E-value=7.5 Score=40.03 Aligned_cols=67 Identities=19% Similarity=0.349 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000489 917 VAMAEIRKENAVLKSSLDSLEKKNSTLELELIK----AQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLS 983 (1463)
Q Consensus 917 ~~~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~e----l~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~ 983 (1463)
..+..++.+...++.++..++...+.....+.. ...+...+..++.+++.++++|..++.-|-.++.
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445555555555555544444443333 2345556667777777777777777766665543
No 106
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=94.08 E-value=14 Score=42.63 Aligned_cols=48 Identities=25% Similarity=0.318 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000489 946 ELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 993 (1463)
Q Consensus 946 e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lk 993 (1463)
.+.+...+...+..+++..+..-..|+++++.|.+-+..++.+.+-++
T Consensus 246 ~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~ 293 (561)
T KOG1103|consen 246 LIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLR 293 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence 334444445555566666666667778888888887777777666544
No 107
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.05 E-value=16 Score=43.01 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 000489 968 CSSLQQNMQSLEEKLSHLEDENHVLRQKA 996 (1463)
Q Consensus 968 i~~L~~e~~~Lee~l~~Le~E~~~Lkqq~ 996 (1463)
++.|-.|+--|.+++..++.|...+++.+
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i 219 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTI 219 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666777777777777777766554
No 108
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.99 E-value=18 Score=43.32 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHH
Q 000489 917 VAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSL----EEKLSHLEDENHVL 992 (1463)
Q Consensus 917 ~~~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~L----ee~l~~Le~E~~~L 992 (1463)
+++..+..+...++.+++..++++.+++.++.+++...+++..+..++..++.+++...+.. ..++..|+.+.+.|
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDAL 288 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 34555555555555556655556666666655555555555555555555555555443322 22445555555555
Q ss_pred HH
Q 000489 993 RQ 994 (1463)
Q Consensus 993 kq 994 (1463)
..
T Consensus 289 e~ 290 (325)
T PF08317_consen 289 EK 290 (325)
T ss_pred HH
Confidence 43
No 109
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.99 E-value=12 Score=49.07 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000489 834 AKNKLERQLEDLTWRVQLEKK 854 (1463)
Q Consensus 834 ~~~~Le~ki~el~~rl~~ek~ 854 (1463)
.+..|+-++.+++.++.-.++
T Consensus 301 ~kt~lel~~kdlq~~i~~n~q 321 (1200)
T KOG0964|consen 301 KKTKLELKIKDLQDQITGNEQ 321 (1200)
T ss_pred HhhhhhhhhHHHHHHhhhhhh
Confidence 345566667777777775544
No 110
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=93.94 E-value=0.25 Score=58.50 Aligned_cols=133 Identities=14% Similarity=0.122 Sum_probs=74.3
Q ss_pred cccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHhHHHHHhhhcc-CCcccccchhhhhhchHHHHHHHhhcC
Q 000489 1250 SHTSQWDNIIKFLDSLMRRLRENHVPSFFIRKLITQVFSFINISLFNSLLLR-RECCTFSNGEYVKSGLAELEKWIVSAK 1328 (1463)
Q Consensus 1250 ~~~~~~~~il~~L~~~~~~L~~~~V~~~l~~Q~f~QlF~~ina~lfN~Ll~r-~~~cs~s~G~qIr~nls~Le~W~~~~~ 1328 (1463)
.++..+.+++.+|..++... ...+|+.+..-++...|.+|+..+.+-|+.. -+..+-.--.++...+..+|.++.+..
T Consensus 176 ~ps~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~ 254 (311)
T PF04091_consen 176 EPSDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSLP 254 (311)
T ss_dssp S--HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-S
T ss_pred CCCHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhCc
Confidence 35567899999999998644 5789999999999999999999999998754 344555555788999999999999871
Q ss_pred c--ccccccHHhhHHHHHHHHHHhhcccCccCHHHHHHccCCCCCHHHHHHHHhcCc
Q 000489 1329 E--EFAGTSWHELNYIRQAVGFLVIHQKRKKSLDEIRQDLCPALTVRQIYRICTMYW 1383 (1463)
Q Consensus 1329 l--~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~c~~Ls~~Ql~kIL~~Y~ 1383 (1463)
. .-.+.....|..++|.++||....-..--...++..-.+.++|..+..||..|+
T Consensus 255 ~~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r~~kY~~v~p~~~~~lLeK~k 311 (311)
T PF04091_consen 255 VPGNNIPSLRETFAELRQLVDLLLSDDWEEYLDPGIRERKYSRVKPEKAIKLLEKLK 311 (311)
T ss_dssp SSS--SSTTGGGGHHHHHHHHHHH---------------------------------
T ss_pred CcccccccHHHHHHHHHHHHHHHhcCCHHHHhCccccccccCCCCHHHHHHHHHhcC
Confidence 1 124567889999999999999863222211145555688999999999988774
No 111
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.91 E-value=45 Score=47.70 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=6.1
Q ss_pred cCCCccchhhHH
Q 000489 610 GYPTRRTYSDFV 621 (1463)
Q Consensus 610 gyp~r~~~~~F~ 621 (1463)
|.|.++...+|+
T Consensus 125 ~~~~~v~~~d~l 136 (1486)
T PRK04863 125 GLPDSVQPTDLL 136 (1486)
T ss_pred cCccccChHHHH
Confidence 345455555555
No 112
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.79 E-value=5.6 Score=51.04 Aligned_cols=37 Identities=16% Similarity=0.374 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000489 956 NTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVL 992 (1463)
Q Consensus 956 ~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~L 992 (1463)
+...+++.++++++.+..++..-++.+.+|+.++..+
T Consensus 444 ~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~ 480 (594)
T PF05667_consen 444 QKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKL 480 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444455555555555555555555555555555444
No 113
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=93.78 E-value=16 Score=42.18 Aligned_cols=10 Identities=30% Similarity=0.534 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 000489 868 SKLQKLLESL 877 (1463)
Q Consensus 868 ~~Lq~~le~l 877 (1463)
..++..++.+
T Consensus 110 ~~ler~i~~L 119 (294)
T COG1340 110 KSLEREIERL 119 (294)
T ss_pred HHHHHHHHHH
Confidence 3333334333
No 114
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.77 E-value=22 Score=45.44 Aligned_cols=15 Identities=20% Similarity=0.271 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhH
Q 000489 919 MAEIRKENAVLKSSL 933 (1463)
Q Consensus 919 ~~~L~~e~~~Lk~e~ 933 (1463)
+..|+.+...++.++
T Consensus 339 v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 339 VSSLEAELNKTRSEL 353 (522)
T ss_pred HhhHHHHHHHHHHHH
Confidence 444444444444444
No 115
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.75 E-value=20 Score=45.14 Aligned_cols=68 Identities=25% Similarity=0.317 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000489 919 MAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLE 986 (1463)
Q Consensus 919 ~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le 986 (1463)
+.+++.+...++..+..++.++..+..+...+..+...+.+.+...---..+++..++.|.+++.-+.
T Consensus 150 l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 150 LSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444433333333332223344444444444444333
No 116
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.48 E-value=15 Score=45.89 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 000489 916 LVAMAEIRKENAVLKSSL 933 (1463)
Q Consensus 916 ~~~~~~L~~e~~~Lk~e~ 933 (1463)
+++++.+..+++.|+.++
T Consensus 307 EeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 307 EEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555554
No 117
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.45 E-value=0.86 Score=50.21 Aligned_cols=64 Identities=30% Similarity=0.332 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000489 916 LVAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 993 (1463)
Q Consensus 916 ~~~~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lk 993 (1463)
...+..++.++..|+..+..+...+.+..+.++. +..++..|+-++..+++++.+++.||..|-
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~--------------l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEI--------------LQDELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555444444444444443333 334444445555555555555555555543
No 118
>PRK02224 chromosome segregation protein; Provisional
Probab=93.43 E-value=43 Score=45.89 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=11.5
Q ss_pred HcccCccccccceeeecccccccc
Q 000489 648 KLKLENFQLGRTKVFLRAGQIGIL 671 (1463)
Q Consensus 648 ~~~~~~~~iGkTkVFlr~~~~~~L 671 (1463)
-+|++.-.| ..-||++.|.+..+
T Consensus 121 llg~~~~~f-~~~~~i~Qge~~~~ 143 (880)
T PRK02224 121 LLRMDAEAF-VNCAYVRQGEVNKL 143 (880)
T ss_pred HHCCCHHHh-cceeEeeccChHHH
Confidence 345542222 33367777766443
No 119
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.37 E-value=52 Score=46.65 Aligned_cols=15 Identities=33% Similarity=0.640 Sum_probs=9.2
Q ss_pred cCCHH-HHHHHHHHhh
Q 000489 1391 SVSNE-VVAQMREILN 1405 (1463)
Q Consensus 1391 ~v~~~-~i~~v~~~~~ 1405 (1463)
.||++ ++..|+..+.
T Consensus 1066 ~lP~e~~~~~l~~l~~ 1081 (1201)
T PF12128_consen 1066 ELPSEEYVNALRELLD 1081 (1201)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 46766 7666655543
No 120
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.23 E-value=7.2 Score=49.83 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000489 919 MAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQ 972 (1463)
Q Consensus 919 ~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~ 972 (1463)
.+....|..+++.++++.....+.++-.++..++++.-+.-.++.-+.++..|+
T Consensus 489 kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~ 542 (861)
T PF15254_consen 489 KQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLR 542 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHH
Confidence 334555666666666666666666666666666666655555554444444333
No 121
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.21 E-value=7.7 Score=49.84 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 000489 961 LREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQKALS 998 (1463)
Q Consensus 961 l~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lkqq~~~ 998 (1463)
....-.++..++.++..+++++...+...+.|..+..+
T Consensus 442 ~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 442 SKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEK 479 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344555666666666666666666666666665544
No 122
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=93.10 E-value=24 Score=41.98 Aligned_cols=11 Identities=36% Similarity=0.030 Sum_probs=7.1
Q ss_pred HHHHHHHHHHH
Q 000489 776 HKAATVIQACW 786 (1463)
Q Consensus 776 ~~aa~~IQ~~~ 786 (1463)
..|.+.||+.+
T Consensus 84 ~~Asv~IQara 94 (552)
T KOG2129|consen 84 LLASVEIQARA 94 (552)
T ss_pred hhhhhHHhhcc
Confidence 36777777644
No 123
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.97 E-value=18 Score=45.56 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=12.8
Q ss_pred HHHhcchhhhhHHhhhhhHHHH
Q 000489 688 HRWRTFIAHRNFVSIRAAAFVL 709 (1463)
Q Consensus 688 ~~~R~~~~Rk~~~~~r~a~i~i 709 (1463)
.++-.|+.|-+|+.-.+....+
T Consensus 49 DRLA~YIekVR~LEaqN~~L~~ 70 (546)
T KOG0977|consen 49 DRLAVYIEKVRFLEAQNRKLEH 70 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777665544433
No 124
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.95 E-value=39 Score=44.13 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHccc-CCeeEEEec
Q 000489 550 ASRFKQQLQALMETLNST-EPHYIRCVK 576 (1463)
Q Consensus 550 ~~~f~~~l~~L~~~l~~t-~~h~irCIk 576 (1463)
-.+|+.+...|-+--..| +..|.+|+-
T Consensus 225 RdRf~~qf~rLk~FY~~~S~lqYfk~LI 252 (980)
T KOG0980|consen 225 RDRFHTQFERLKQFYADCSNLQYFKRLI 252 (980)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHh
Confidence 356666666665544444 334555543
No 125
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.90 E-value=0.068 Score=54.34 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
++..+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 35678999999999999999999988864
No 126
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.80 E-value=18 Score=39.82 Aligned_cols=29 Identities=31% Similarity=0.389 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHH
Q 000489 919 MAEIRKENAVLKSSLDSLEKKNSTLELEL 947 (1463)
Q Consensus 919 ~~~L~~e~~~Lk~e~~~l~~~~~ele~e~ 947 (1463)
.++|..+.+.++..+++...++..++..+
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~l 148 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQL 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555443
No 127
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.79 E-value=26 Score=41.58 Aligned_cols=12 Identities=17% Similarity=0.504 Sum_probs=5.0
Q ss_pred HHhHHHHHHHHH
Q 000489 982 LSHLEDENHVLR 993 (1463)
Q Consensus 982 l~~Le~E~~~Lk 993 (1463)
+..|+...+.|.
T Consensus 273 i~~Lk~~~~~Le 284 (312)
T smart00787 273 IEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 128
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.71 E-value=0.075 Score=53.65 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=21.1
Q ss_pred EEEcCCCCCCchHHHHHHHHHH
Q 000489 151 ILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yl 172 (1463)
|+|+|-+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999997
No 129
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.58 E-value=18 Score=39.23 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 000489 865 VEISKLQKLLESLNLELDAAKLAT 888 (1463)
Q Consensus 865 ~E~~~Lq~~le~l~~eL~~~~~~~ 888 (1463)
.++..+..++++-..+|..++...
T Consensus 49 ien~~l~~kIeERn~eL~~Lk~~~ 72 (177)
T PF13870_consen 49 IENQQLNEKIEERNKELLKLKKKI 72 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666665555554433
No 130
>PRK01156 chromosome segregation protein; Provisional
Probab=92.55 E-value=34 Score=46.99 Aligned_cols=76 Identities=16% Similarity=0.230 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000489 918 AMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNN-----------TIEKLREVEQKCSSLQQNMQSLEEKLSHLE 986 (1463)
Q Consensus 918 ~~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~-----------l~~el~~~e~~i~~L~~e~~~Lee~l~~Le 986 (1463)
....+..+...+...++.+...+..+..++..+..+... ...++++...++.++..++..++.++..++
T Consensus 357 ~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~i~~l~~~i~~l~ 436 (895)
T PRK01156 357 ELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALR 436 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443333332222 222334445555666666666666666666
Q ss_pred HHHHHHH
Q 000489 987 DENHVLR 993 (1463)
Q Consensus 987 ~E~~~Lk 993 (1463)
.....|+
T Consensus 437 ~~~~el~ 443 (895)
T PRK01156 437 ENLDELS 443 (895)
T ss_pred HHHHHHH
Confidence 5555554
No 131
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.51 E-value=0.086 Score=56.98 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=22.4
Q ss_pred HhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 143 ISEHQSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 143 ~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
...+...+|+|.|++|+|||...+.+++++..-
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 456778999999999999999999988888754
No 132
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.45 E-value=26 Score=47.31 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000489 392 VASRDALAKTVYSRLFDWLVEK 413 (1463)
Q Consensus 392 ~~~rd~lak~lY~~lF~wiv~~ 413 (1463)
..-||.|+-.- =.|||..
T Consensus 123 ~EERDimv~~n----s~Wiv~L 140 (1317)
T KOG0612|consen 123 REERDIMVFGN----SEWIVQL 140 (1317)
T ss_pred HHHhHHHHcCC----cHHHHHH
Confidence 45677777554 3488764
No 133
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.44 E-value=2 Score=50.84 Aligned_cols=11 Identities=27% Similarity=0.863 Sum_probs=5.9
Q ss_pred cHHHHHHHHHH
Q 000489 1254 QWDNIIKFLDS 1264 (1463)
Q Consensus 1254 ~~~~il~~L~~ 1264 (1463)
.|..-+++|-.
T Consensus 289 ~WT~AlK~lLt 299 (314)
T PF04111_consen 289 EWTKALKYLLT 299 (314)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66665554433
No 134
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.38 E-value=6.3 Score=43.21 Aligned_cols=24 Identities=42% Similarity=0.659 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q 000489 963 EVEQKCSSLQQNMQSLEEKLSHLE 986 (1463)
Q Consensus 963 ~~e~~i~~L~~e~~~Lee~l~~Le 986 (1463)
..+....+++.+...+++.+.+++
T Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 162 ELRSQLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444333
No 135
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.34 E-value=72 Score=45.67 Aligned_cols=19 Identities=21% Similarity=0.386 Sum_probs=9.6
Q ss_pred HHHHHhhhhHHHHHHHHHH
Q 000489 792 RSAFQHHQTSIIAIQCRWR 810 (1463)
Q Consensus 792 r~~y~~~~~a~v~iQ~~~R 810 (1463)
...+..++..+..|+...+
T Consensus 660 ~e~~~~l~~ev~~ir~~l~ 678 (1822)
T KOG4674|consen 660 QEDFDSLQKEVTAIRSQLE 678 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554443
No 136
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=92.26 E-value=9.5 Score=46.46 Aligned_cols=75 Identities=23% Similarity=0.244 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000489 919 MAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 993 (1463)
Q Consensus 919 ~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lk 993 (1463)
......++.+|..++.++.+++..+.-+.+++..-.......-+.++.+..++++...+..+...+-+.|++.|+
T Consensus 228 l~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 228 LSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445555555555555555554444443333222222222233333333444444444444455555555555
No 137
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.25 E-value=0.11 Score=46.93 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=20.9
Q ss_pred EEEcCCCCCCchHHHHHHHHHH
Q 000489 151 ILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yl 172 (1463)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999998
No 138
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=92.23 E-value=26 Score=40.37 Aligned_cols=133 Identities=25% Similarity=0.331 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHhHHHH
Q 000489 866 EISKLQKLLESLNLELDAAKLATINECNKNAMLQNQLELSLKEKSALERELV-AMAEIRKENAVLKSSLDSLEKKNSTLE 944 (1463)
Q Consensus 866 E~~~Lq~~le~l~~eL~~~~~~~~~e~~~~~~~~~ele~~~~e~~~l~e~~~-~~~~L~~e~~~Lk~e~~~l~~~~~ele 944 (1463)
....|..+++.....|..+......-......+.-.+....+||..+++.+. .+..+...+.-|-.++...+.+...++
T Consensus 85 ~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe 164 (305)
T PF14915_consen 85 NKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLE 164 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3455566666666555554433322222333333444455566666655533 355666666666666666555555555
Q ss_pred HHHHHHH--------------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 000489 945 LELIKAQ--------------KENNNTIEKLREVEQK-------CSSLQQNMQSLEEKLSHLEDENHVLRQKALS 998 (1463)
Q Consensus 945 ~e~~el~--------------~~~~~l~~el~~~e~~-------i~~L~~e~~~Lee~l~~Le~E~~~Lkqq~~~ 998 (1463)
.++.... +...+..-.+++++.. .......-+.+++++.+++++|-.|++++-.
T Consensus 165 ~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLdd 239 (305)
T PF14915_consen 165 IELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDD 239 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444332 2222222223333222 2223333456678889999999999988643
No 139
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.04 E-value=43 Score=42.37 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 000489 915 ELVAMAEIRKENAVLKSSL 933 (1463)
Q Consensus 915 ~~~~~~~L~~e~~~Lk~e~ 933 (1463)
+..++..++.+++.|+.++
T Consensus 247 aq~ri~~lE~e~e~L~~ql 265 (629)
T KOG0963|consen 247 AQQRIVFLEREVEQLREQL 265 (629)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544
No 140
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.04 E-value=0.1 Score=56.40 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=21.8
Q ss_pred eEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 149 QSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 149 QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
+.|+|.|.||||||+.++.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999998877763
No 141
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.95 E-value=12 Score=44.03 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHH
Q 000489 919 MAEIRKENAVLKSSLDSLEKKNSTLELEL 947 (1463)
Q Consensus 919 ~~~L~~e~~~Lk~e~~~l~~~~~ele~e~ 947 (1463)
+..+..+.+.++.+++..++++.+++..+
T Consensus 72 ~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 72 LERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443333
No 142
>PLN03188 kinesin-12 family protein; Provisional
Probab=91.93 E-value=49 Score=45.30 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHH
Q 000489 130 HVFAVADASYRAMISEHQSQSILVSGESGAGKTETT 165 (1463)
Q Consensus 130 Hi~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~ 165 (1463)
.||..+-.-.-.-.-.|-|=||+.-|.+|||||.|.
T Consensus 148 dVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM 183 (1320)
T PLN03188 148 DIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTM 183 (1320)
T ss_pred HHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEee
Confidence 566655433323334788999999999999999774
No 143
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=91.88 E-value=0.19 Score=51.26 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=25.4
Q ss_pred cCCCeEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 145 EHQSQSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 145 ~~~~QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
......++|.|++|+|||..++.+.+.+.
T Consensus 16 ~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 16 LPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34567999999999999999999988885
No 144
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.84 E-value=7.5 Score=42.61 Aligned_cols=8 Identities=38% Similarity=0.409 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 000489 873 LLESLNLE 880 (1463)
Q Consensus 873 ~le~l~~e 880 (1463)
.+..+..+
T Consensus 89 ~l~~l~~e 96 (191)
T PF04156_consen 89 QLQQLQEE 96 (191)
T ss_pred HHHHHHHH
Confidence 33333333
No 145
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.76 E-value=25 Score=39.04 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=11.0
Q ss_pred HHHhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000489 929 LKSSLDSLEKKNSTLELELIKAQKENNNT 957 (1463)
Q Consensus 929 Lk~e~~~l~~~~~ele~e~~el~~~~~~l 957 (1463)
++.++..++.+.+.++..+..++.+++++
T Consensus 98 ~ek~l~~Lk~e~evL~qr~~kle~ErdeL 126 (201)
T PF13851_consen 98 LEKELKDLKWEHEVLEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 146
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.74 E-value=9.2 Score=38.58 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 000489 965 EQKCSSLQQNMQSLEE 980 (1463)
Q Consensus 965 e~~i~~L~~e~~~Lee 980 (1463)
.++.++|+.++..+++
T Consensus 95 ~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 95 SEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 147
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=91.73 E-value=5.3 Score=44.98 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 000489 968 CSSLQQNMQSLEEKLSHLEDENHVLRQK 995 (1463)
Q Consensus 968 i~~L~~e~~~Lee~l~~Le~E~~~Lkqq 995 (1463)
....++...++.+++..|+.++..++.+
T Consensus 76 r~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 76 RNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444443
No 148
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.64 E-value=0.1 Score=60.42 Aligned_cols=28 Identities=36% Similarity=0.538 Sum_probs=25.4
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
++.+.+=|-||||||||++++-||+.|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4678888999999999999999999985
No 149
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.58 E-value=0.18 Score=58.38 Aligned_cols=28 Identities=36% Similarity=0.586 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
.....++|+|++|+|||+.++.+.+.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3456899999999999999999987765
No 150
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=91.57 E-value=0.34 Score=59.27 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHH
Q 000489 132 FAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQY 171 (1463)
Q Consensus 132 ~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~y 171 (1463)
+...-.|...+..-++.|-+.|.|.||+|||+..+.+++.
T Consensus 146 l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~ 185 (444)
T PRK08972 146 LDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRG 185 (444)
T ss_pred ccccceeecceEEEcCCCEEEEECCCCCChhHHHHHhccC
Confidence 3444455566666788999999999999999998888753
No 151
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=91.55 E-value=2.4 Score=46.67 Aligned_cols=57 Identities=25% Similarity=0.325 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000489 922 IRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSL 978 (1463)
Q Consensus 922 L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~L 978 (1463)
++.|++.++++.+.+++++++.+.+++.+++....+.+..++...+++.|.++.++|
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~L 205 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKL 205 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 445555555555555555555555555444444444444444444444444333333
No 152
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.52 E-value=0.26 Score=50.63 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
..+..|+++|++|||||+.+|.+.+.|
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 456689999999999999999998877
No 153
>PRK01156 chromosome segregation protein; Provisional
Probab=91.49 E-value=72 Score=43.85 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhcCCCH
Q 000489 1257 NIIKFLDSLMRRLRENHVPS 1276 (1463)
Q Consensus 1257 ~il~~L~~~~~~L~~~~V~~ 1276 (1463)
..+..|+.+...+...+++.
T Consensus 733 ~~~~~l~~~r~~l~k~~~~~ 752 (895)
T PRK01156 733 KAIGDLKRLREAFDKSGVPA 752 (895)
T ss_pred HHHHHHHHHHHHhhhccchH
Confidence 34455555666666655555
No 154
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=91.45 E-value=44 Score=43.74 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhHHHHHH---HhHHHHHHHHHHHHHHHHHHHHH
Q 000489 919 MAEIRKENAVLKSSLDSLEK---KNSTLELELIKAQKENNNTIEKL 961 (1463)
Q Consensus 919 ~~~L~~e~~~Lk~e~~~l~~---~~~ele~e~~el~~~~~~l~~el 961 (1463)
..+|+.||..|++++..++. +.+.++.++..++++.+-+...+
T Consensus 99 yselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~ql 144 (717)
T PF09730_consen 99 YSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQL 144 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666655544 23344444444444444333333
No 155
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=91.38 E-value=21 Score=41.62 Aligned_cols=9 Identities=33% Similarity=0.486 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 000489 985 LEDENHVLR 993 (1463)
Q Consensus 985 Le~E~~~Lk 993 (1463)
.+.|++.++
T Consensus 295 aQEElk~lR 303 (306)
T PF04849_consen 295 AQEELKTLR 303 (306)
T ss_pred HHHHHHHhh
Confidence 334444443
No 156
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.33 E-value=10 Score=38.32 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000489 868 SKLQKLLESLNLELDAA 884 (1463)
Q Consensus 868 ~~Lq~~le~l~~eL~~~ 884 (1463)
.+|+..+..++.++..+
T Consensus 19 e~L~s~lr~~E~E~~~l 35 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASL 35 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 157
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=91.25 E-value=36 Score=44.59 Aligned_cols=18 Identities=11% Similarity=0.222 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHH---HHHHHH
Q 000489 1196 FKQQLTACVEKI---FGLIRD 1213 (1463)
Q Consensus 1196 ~~qqL~~~~~~i---y~~l~~ 1213 (1463)
.+..|..+.+.+ |+.++.
T Consensus 445 AQDELvtfSEeLAqLYHHVC~ 465 (717)
T PF09730_consen 445 AQDELVTFSEELAQLYHHVCM 465 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544 655543
No 158
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.22 E-value=21 Score=42.00 Aligned_cols=47 Identities=23% Similarity=0.397 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 000489 952 KENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQKALS 998 (1463)
Q Consensus 952 ~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lkqq~~~ 998 (1463)
.+++++..+++.+..++.+|+.++..+-++..++..|-+..+.++.+
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~R 172 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHR 172 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888999999999988888888888888887776644
No 159
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=91.22 E-value=7.9 Score=43.64 Aligned_cols=63 Identities=22% Similarity=0.351 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000489 919 MAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEK 981 (1463)
Q Consensus 919 ~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~ 981 (1463)
++.|..|.....+++.....++..++..+..++.++.+....+..+..++..|+.++.++...
T Consensus 41 ~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 41 MEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555556666666666666555555555555545555555555554443
No 160
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.06 E-value=0.14 Score=54.85 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.4
Q ss_pred CeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 148 SQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
..-|||||.||+|||+.+|.++.-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568999999999999999998877
No 161
>PRK06696 uridine kinase; Validated
Probab=91.03 E-value=0.27 Score=55.37 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 133 AVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 133 avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
.+|+..+.. ..+..--|.|+|.||||||+.|+.|.+.|..
T Consensus 9 ~la~~~~~~--~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 9 ELAEHILTL--NLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHh--CCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345554432 3456778999999999999999999999854
No 162
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=90.96 E-value=0.15 Score=56.20 Aligned_cols=25 Identities=40% Similarity=0.476 Sum_probs=22.8
Q ss_pred EEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 151 ILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
|-|+|.||||||+.|+.+-..|...
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 7799999999999999999999754
No 163
>PRK05480 uridine/cytidine kinase; Provisional
Probab=90.94 E-value=0.19 Score=56.00 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
++.--|.|+|.||||||+.++.|.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999887
No 164
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=90.91 E-value=0.24 Score=52.31 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=25.4
Q ss_pred CeEEEEcCCCCCCchHHHHHHHHHHHHhh
Q 000489 148 SQSILVSGESGAGKTETTKLIMQYLTFVG 176 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~yla~~~ 176 (1463)
.-.|.++|.||||||+.++.+-+.|-..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 34799999999999999999999998764
No 165
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=90.88 E-value=60 Score=41.84 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000489 962 REVEQKCSSLQQNMQSLEEKLSHLEDENHV 991 (1463)
Q Consensus 962 ~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~ 991 (1463)
+..+++++.|+.++.+...++..++.+++.
T Consensus 479 rKVeqe~emlKaen~rqakkiefmkEeiQe 508 (1265)
T KOG0976|consen 479 RKVEQEYEMLKAENERQAKKIEFMKEEIQE 508 (1265)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888888888888775
No 166
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=90.88 E-value=0.18 Score=49.64 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIM 169 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~ 169 (1463)
+..+.+.|.|+||||||+.++.++
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 346789999999999999999976
No 167
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=90.82 E-value=0.18 Score=52.72 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCCchHHHHHHHHH
Q 000489 147 QSQSILVSGESGAGKTETTKLIMQY 171 (1463)
Q Consensus 147 ~~QsIiisGeSGaGKTe~~k~~~~y 171 (1463)
....|+|.|+||||||+.+..+++.
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3678999999999999999776664
No 168
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=90.81 E-value=0.16 Score=51.53 Aligned_cols=23 Identities=43% Similarity=0.751 Sum_probs=21.7
Q ss_pred EEEcCCCCCCchHHHHHHHHHHH
Q 000489 151 ILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla 173 (1463)
|+|.|++|+|||+.++.+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 78999999999999999999984
No 169
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.74 E-value=0.16 Score=56.21 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 147 QSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 147 ~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
..+.|+|.|.||||||+.++.+.+.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 57789999999999999999998876
No 170
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.73 E-value=60 Score=41.62 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=15.1
Q ss_pred HccCCCCCHHHHH-------HHHhcCccCCC
Q 000489 1364 QDLCPALTVRQIY-------RICTMYWDDKY 1387 (1463)
Q Consensus 1364 ~~~c~~Ls~~Ql~-------kIL~~Y~~d~~ 1387 (1463)
.+.|..|-..+|. +|-+.|.+.++
T Consensus 631 r~ac~sL~Gykid~~~~s~~ritS~ya~~~~ 661 (716)
T KOG4593|consen 631 RDACYSLLGYKIDFTLESRYRLTSGYAEEPD 661 (716)
T ss_pred HHHHHhhhhhhhhcccccceeeeeeccCCCc
Confidence 3667777777774 45566665444
No 171
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=90.66 E-value=0.37 Score=54.52 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=29.3
Q ss_pred hcCCCeEEEEcCCCCCCchHHHHHHHHHHHHhhc
Q 000489 144 SEHQSQSILVSGESGAGKTETTKLIMQYLTFVGG 177 (1463)
Q Consensus 144 ~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~ 177 (1463)
..++..-|.|+|.||||||+.++.+...|..-++
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 3467889999999999999999999999986554
No 172
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=90.64 E-value=63 Score=41.73 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 000489 956 NTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQKALS 998 (1463)
Q Consensus 956 ~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lkqq~~~ 998 (1463)
...++..+....++.|..+-....+++.+++..+...+..+.+
T Consensus 390 ~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek 432 (560)
T PF06160_consen 390 EIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEK 432 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444445544445555566666666666555444
No 173
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.62 E-value=0.17 Score=55.92 Aligned_cols=25 Identities=32% Similarity=0.663 Sum_probs=22.4
Q ss_pred EEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 150 SILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 150 sIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
.|+|+|++|||||++.+.+++++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999888753
No 174
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=90.59 E-value=0.17 Score=55.78 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.4
Q ss_pred EEEcCCCCCCchHHHHHHHHHH
Q 000489 151 ILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yl 172 (1463)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998877
No 175
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.59 E-value=2.9 Score=46.28 Aligned_cols=31 Identities=6% Similarity=0.114 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000489 964 VEQKCSSLQQNMQSLEEKLSHLEDENHVLRQ 994 (1463)
Q Consensus 964 ~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lkq 994 (1463)
+++++++|++++..++.++..++.++..++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 176
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.55 E-value=2 Score=47.31 Aligned_cols=54 Identities=28% Similarity=0.278 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000489 916 LVAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCS 969 (1463)
Q Consensus 916 ~~~~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~ 969 (1463)
...+..|..+...++.++.+..+.++.+..++..+.-+...+.+++..++.+..
T Consensus 122 ~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~ 175 (194)
T PF08614_consen 122 EAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENR 175 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666677777777777777777777766665555444444433333333
No 177
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.50 E-value=21 Score=43.14 Aligned_cols=35 Identities=11% Similarity=-0.116 Sum_probs=18.9
Q ss_pred HhhhhHHHHHHHHhhhcCCCCCCcchHHHHHHHHh
Q 000489 1059 RYQENLEFLSRCIKENLGFNNGKPVAACIIYKSLV 1093 (1463)
Q Consensus 1059 ~q~E~~d~l~~~i~~~~~~~~~kp~~A~ilf~cl~ 1093 (1463)
....++..++..+...++....+++.|.-.|...+
T Consensus 487 e~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~k 521 (622)
T COG5185 487 EDIKNLKHDINELTQILEKLELELSEANSKFELSK 521 (622)
T ss_pred HHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555556666665555554
No 178
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.40 E-value=0.27 Score=58.25 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=31.6
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 125 GELSPHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 125 ~~l~PHi~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
+.++|..- ...+.+...+. .|||+|..|||||+..+.++.++..
T Consensus 127 g~~~~~~~----~~L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 127 KIMTEAQA----SVIRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred CCCCHHHH----HHHHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34555432 23444555554 5999999999999999999998853
No 179
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.39 E-value=80 Score=42.47 Aligned_cols=45 Identities=18% Similarity=0.420 Sum_probs=26.1
Q ss_pred eeEEEecCCCCCCCCCCCh-hHHH----HHhhccChhhHHHHHhhcCCCccchh
Q 000489 570 HYIRCVKPNSLNRPQKFEN-PSIL----HQLRCGGVLEAVRISLAGYPTRRTYS 618 (1463)
Q Consensus 570 h~irCIkPN~~~~~~~fd~-~~v~----~QLr~~gvle~iri~~~gyp~r~~~~ 618 (1463)
||---|=||-..+++..|. ..|+ .+||...+=+.|- |||.|.+-.
T Consensus 26 ~FTaIIGPNGSGKSNlMDAISFVLGekss~LR~~~lkdLIy----g~~i~~~v~ 75 (1141)
T KOG0018|consen 26 RFTAIIGPNGSGKSNLMDAISFVLGEKSSHLRVSHLKDLIY----GKPIRKPVT 75 (1141)
T ss_pred hceeeeCCCCCchHHHHHHHHHHhcCCCcccccchHHHHhc----CCccCCchh
Confidence 3444466777777777665 3332 4566555544443 777776555
No 180
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=90.39 E-value=42 Score=39.28 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=29.9
Q ss_pred HHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000489 930 KSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 993 (1463)
Q Consensus 930 k~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lk 993 (1463)
+.++..|..++.+++......-.+++++...|......-..|..++..++++..+...-....+
T Consensus 233 QEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQ 296 (306)
T PF04849_consen 233 QEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQ 296 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444455555555555554444444333
No 181
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.31 E-value=2.3 Score=45.98 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHH
Q 000489 922 IRKENAVLKSSLDSLEKKNSTLE 944 (1463)
Q Consensus 922 L~~e~~~Lk~e~~~l~~~~~ele 944 (1463)
+.++++.|..++++++.++++.+
T Consensus 147 ~~~EkeeL~~eleele~e~ee~~ 169 (290)
T COG4026 147 LQKEKEELLKELEELEAEYEEVQ 169 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 182
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.30 E-value=9.8 Score=45.86 Aligned_cols=11 Identities=27% Similarity=0.957 Sum_probs=6.5
Q ss_pred CCCCCCChhHH
Q 000489 581 NRPQKFENPSI 591 (1463)
Q Consensus 581 ~~~~~fd~~~v 591 (1463)
..|..||.+..
T Consensus 61 ~~p~e~DDPn~ 71 (359)
T PF10498_consen 61 EQPQEYDDPNA 71 (359)
T ss_pred CCCcccCCHHH
Confidence 34667776554
No 183
>PTZ00301 uridine kinase; Provisional
Probab=90.30 E-value=0.19 Score=55.93 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEcCCCCCCchHHHHHHHHHHH
Q 000489 151 ILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla 173 (1463)
|-|+|.||||||+.|+.|.+.|.
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHH
Confidence 67899999999999998887764
No 184
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=90.25 E-value=78 Score=42.14 Aligned_cols=75 Identities=28% Similarity=0.346 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000489 919 MAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 993 (1463)
Q Consensus 919 ~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lk 993 (1463)
......++..++..++.+..++.+.+-.+..++.+...+.......+.++..|.-+++...+++.+++.++..++
T Consensus 467 le~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~ 541 (775)
T PF10174_consen 467 LETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLR 541 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444445555555555555555555444444444444444444444566667777777777777777776666543
No 185
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.21 E-value=18 Score=41.42 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 000489 871 QKLLESLNLELD 882 (1463)
Q Consensus 871 q~~le~l~~eL~ 882 (1463)
..++..++.+..
T Consensus 11 e~rL~q~eee~~ 22 (246)
T PF00769_consen 11 EERLRQMEEEMR 22 (246)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 186
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.15 E-value=44 Score=41.23 Aligned_cols=20 Identities=15% Similarity=0.336 Sum_probs=8.5
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 000489 975 MQSLEEKLSHLEDENHVLRQ 994 (1463)
Q Consensus 975 ~~~Lee~l~~Le~E~~~Lkq 994 (1463)
+..++.++..++.+...++.
T Consensus 248 l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 248 LTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 187
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=90.04 E-value=0.24 Score=55.06 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
.+..-|.|+|.||||||+.++.+...|.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567888999999999999999887764
No 188
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.01 E-value=0.32 Score=56.31 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=26.6
Q ss_pred HHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 139 YRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 139 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
+..+.... .-.|+|+|++|||||++.+.++.++..
T Consensus 72 l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 72 FRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred HHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 34444322 346999999999999999999988853
No 189
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.00 E-value=4.3 Score=45.01 Aligned_cols=9 Identities=22% Similarity=0.516 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 000489 870 LQKLLESLN 878 (1463)
Q Consensus 870 Lq~~le~l~ 878 (1463)
+++++++++
T Consensus 98 le~el~~l~ 106 (206)
T PRK10884 98 LENQVKTLT 106 (206)
T ss_pred HHHHHHHHH
Confidence 333333333
No 190
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.93 E-value=19 Score=47.65 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=14.7
Q ss_pred ccCCeeEEEecCCCCCCCCC
Q 000489 566 STEPHYIRCVKPNSLNRPQK 585 (1463)
Q Consensus 566 ~t~~h~irCIkPN~~~~~~~ 585 (1463)
.|.++||.|-+|.....|..
T Consensus 422 ~~~Ve~llcT~~~~~~~~~P 441 (717)
T PF10168_consen 422 PCIVEYLLCTKPLSSSAPNP 441 (717)
T ss_pred CcceEEEeccCCCCCCCCCC
Confidence 35579999999977655543
No 191
>PRK08233 hypothetical protein; Provisional
Probab=89.88 E-value=0.18 Score=54.44 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.2
Q ss_pred eEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 149 QSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 149 QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
.-|.|+|.||||||+.++.+..+|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999988874
No 192
>PRK05541 adenylylsulfate kinase; Provisional
Probab=89.87 E-value=0.23 Score=53.66 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=25.6
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
.+..-|++.|.||||||+.++.+.+.|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45668999999999999999999998864
No 193
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.86 E-value=46 Score=41.10 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q 000489 965 EQKCSSLQQNMQSLEEKLSHLEDEN 989 (1463)
Q Consensus 965 e~~i~~L~~e~~~Lee~l~~Le~E~ 989 (1463)
+.++..++.++..++.++..++...
T Consensus 245 ~~~l~~~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 245 LEELTEAQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555444433
No 194
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=89.85 E-value=74 Score=41.26 Aligned_cols=12 Identities=33% Similarity=0.565 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 000489 834 AKNKLERQLEDL 845 (1463)
Q Consensus 834 ~~~~Le~ki~el 845 (1463)
....+..++.+|
T Consensus 224 ~~~~~P~ql~el 235 (569)
T PRK04778 224 LQTELPDQLQEL 235 (569)
T ss_pred HHHHhhHHHHHH
Confidence 333344444444
No 195
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.77 E-value=5.3 Score=47.38 Aligned_cols=7 Identities=14% Similarity=0.311 Sum_probs=2.9
Q ss_pred HHHHHhh
Q 000489 1067 LSRCIKE 1073 (1463)
Q Consensus 1067 l~~~i~~ 1073 (1463)
|+..|..
T Consensus 181 LL~~la~ 187 (314)
T PF04111_consen 181 LLQTLAK 187 (314)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 196
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=89.71 E-value=38 Score=37.81 Aligned_cols=53 Identities=13% Similarity=0.111 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000489 942 TLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQ 994 (1463)
Q Consensus 942 ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lkq 994 (1463)
+++....++..-..++.++++.++.-+--|++++...++++..+++.+..+.+
T Consensus 254 Elkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sq 306 (330)
T KOG2991|consen 254 ELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQ 306 (330)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444445555555556666666666666666666665544
No 197
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.68 E-value=47 Score=38.81 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=13.1
Q ss_pred HHHHHHHhHHHHHHHHHHhhhc
Q 000489 977 SLEEKLSHLEDENHVLRQKALS 998 (1463)
Q Consensus 977 ~Lee~l~~Le~E~~~Lkqq~~~ 998 (1463)
+|.+++.+|..+...|+.++..
T Consensus 182 ~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 182 RLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 4445556666677777665543
No 198
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=89.63 E-value=0.21 Score=53.31 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=20.9
Q ss_pred EEEEcCCCCCCchHHHHHHHHHH
Q 000489 150 SILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 150 sIiisGeSGaGKTe~~k~~~~yl 172 (1463)
-|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998876
No 199
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=89.58 E-value=28 Score=42.72 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000489 959 EKLREVEQKCSSLQQNMQSLEEKLS 983 (1463)
Q Consensus 959 ~el~~~e~~i~~L~~e~~~Lee~l~ 983 (1463)
.++++++.++.+......+.+++++
T Consensus 275 aE~~EleDkyAE~m~~~~EaeeELk 299 (596)
T KOG4360|consen 275 AELEELEDKYAECMQMLHEAEEELK 299 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344433334444444333
No 200
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=89.57 E-value=1.2e+02 Score=43.48 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000489 862 AKSVEISKLQKLLESLNLELDAAKLATINECNKNAMLQNQ 901 (1463)
Q Consensus 862 ak~~E~~~Lq~~le~l~~eL~~~~~~~~~e~~~~~~~~~e 901 (1463)
..+....+++.++++|..++..++.....+..++..+...
T Consensus 795 s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~ 834 (1822)
T KOG4674|consen 795 SEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNS 834 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334455666666666666666666555555555544433
No 201
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=89.55 E-value=0.24 Score=53.75 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=22.0
Q ss_pred EEEcCCCCCCchHHHHHHHHHHHH
Q 000489 151 ILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
|.|+|.||||||+.++.+...|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998864
No 202
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=89.54 E-value=0.41 Score=57.28 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=36.0
Q ss_pred HHHhhCCCCCCCChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 116 MEQYKGAPFGELSPHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 116 ~~~y~~~~~~~l~PHi~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
.++|+...+.++-.|-..+. ........+....++++|++|+|||+.++.+.+++.
T Consensus 6 ~~ky~P~~~~~~~g~~~~~~--~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 6 TEKYRPALLEDILGQDEVVE--RLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHhhCCCcHHHhcCCHHHHH--HHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 45566555444433332221 223333444445799999999999999999998885
No 203
>PRK06315 type III secretion system ATPase; Provisional
Probab=89.53 E-value=0.54 Score=57.87 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 137 ASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 137 ~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
.|...++.-++.|.+.|.|+||+|||+..+.++.+.
T Consensus 153 ~aID~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 188 (442)
T PRK06315 153 RCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNA 188 (442)
T ss_pred EEEeccccccCCcEEEEECCCCCCcchHHHHhhccc
Confidence 344445566789999999999999999999998776
No 204
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.52 E-value=79 Score=41.13 Aligned_cols=12 Identities=33% Similarity=0.526 Sum_probs=7.3
Q ss_pred ccCCccCCCCcc
Q 000489 1418 LDDDLSIPFSTE 1429 (1463)
Q Consensus 1418 lD~~~~~Pf~~~ 1429 (1463)
|-+.-+|||=+-
T Consensus 594 L~~~pcipffy~ 605 (617)
T PF15070_consen 594 LGSNPCIPFFYR 605 (617)
T ss_pred CCCCCcccceee
Confidence 555567777553
No 205
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.49 E-value=52 Score=39.01 Aligned_cols=202 Identities=23% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHH-HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000489 788 MCKFRSAFQHHQTSIIAIQCR-WRQK-------LAKRELRRLKQVANEAGALRLAKNKLERQLEDLTWRVQLEKKLRVST 859 (1463)
Q Consensus 788 ~~~~r~~y~~~~~a~v~iQ~~-~R~~-------~arr~~~~lk~~a~~~~~l~~~~~~Le~ki~el~~rl~~ek~l~~~~ 859 (1463)
+|+.|.++.......+..+.. ++.. .....-..+....+.+.....-+..++-.+..+...+. .++...
T Consensus 15 ~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~---~~r~k~ 91 (312)
T PF00038_consen 15 SYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELE---DLRRKY 91 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHH---HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
Q 000489 860 EEAKSVEISKLQKLLESLNLELDAAKLATINECNKNAMLQNQLELSLKEKSAL--------------------------- 912 (1463)
Q Consensus 860 ~eak~~E~~~Lq~~le~l~~eL~~~~~~~~~e~~~~~~~~~ele~~~~e~~~l--------------------------- 912 (1463)
++.. .....++..+..+.++++...........++..+.+++..+......-
T Consensus 92 e~e~-~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~ 170 (312)
T PF00038_consen 92 EEEL-AERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAA 170 (312)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHH
T ss_pred HHHH-HHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhh
Q ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000489 913 ---------------------------ERELVAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVE 965 (1463)
Q Consensus 913 ---------------------------~e~~~~~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e 965 (1463)
.+-.............++.++..++..+..++.++..++..+..+...+.+++
T Consensus 171 L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 171 LREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 000489 966 QKCSSLQQNMQSLEEKLSHLEDENHVLRQKA 996 (1463)
Q Consensus 966 ~~i~~L~~e~~~Lee~l~~Le~E~~~Lkqq~ 996 (1463)
..+..+....+..+..++.++..++.++
T Consensus 251 ---~~~~~~~~~~~~~i~~le~el~~l~~~~ 278 (312)
T PF00038_consen 251 ---QRLDEEREEYQAEIAELEEELAELREEM 278 (312)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhhhccchhHHHHHHHH
No 206
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=89.48 E-value=0.25 Score=51.22 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=20.5
Q ss_pred EEEcCCCCCCchHHHHHHHHHH
Q 000489 151 ILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yl 172 (1463)
|+|+|.+|||||+.++.+...+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998876
No 207
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=89.48 E-value=0.24 Score=55.73 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.6
Q ss_pred EEEcCCCCCCchHHHHHHHHHHH
Q 000489 151 ILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla 173 (1463)
|-|+|.||||||+.++.|...|.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999988875
No 208
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.47 E-value=0.4 Score=52.39 Aligned_cols=43 Identities=28% Similarity=0.495 Sum_probs=30.5
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 125 GELSPHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 125 ~~l~PHi~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
+.++|-+.+.-..+ .+. ...|+|+|++|||||++.+.++.++-
T Consensus 8 g~~~~~~~~~l~~~----v~~--g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 8 GTFSPLQAAYLWLA----VEA--RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCCHHHHHHHHHH----HhC--CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45566554443332 333 56899999999999999999887763
No 209
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=89.43 E-value=0.39 Score=57.05 Aligned_cols=53 Identities=17% Similarity=0.326 Sum_probs=35.7
Q ss_pred HHHhhCCCCCCC--ChhHHHHHHHHHHHHHhcC-CCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 116 MEQYKGAPFGEL--SPHVFAVADASYRAMISEH-QSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 116 ~~~y~~~~~~~l--~PHi~avA~~Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
.++|+-....++ ++|+-+ ........+ -+..++++|++|+|||+.++.+.+.+
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~----~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKE----TFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred eeccCCCcHHHhcCcHHHHH----HHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 346776666665 344432 334434333 46677789999999999999998876
No 210
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.38 E-value=57 Score=39.29 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHHHHHHH
Q 000489 917 VAMAEIRKENAVLKSSLDSLEKKNSTLELEL 947 (1463)
Q Consensus 917 ~~~~~L~~e~~~Lk~e~~~l~~~~~ele~e~ 947 (1463)
.+++.|..++..|+..+..++...+++..+.
T Consensus 304 mr~qqleeentelRs~~arlksl~dklaee~ 334 (502)
T KOG0982|consen 304 MRDQQLEEENTELRSLIARLKSLADKLAEED 334 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455566666666655555554444444433
No 211
>PRK06762 hypothetical protein; Provisional
Probab=89.36 E-value=0.26 Score=52.66 Aligned_cols=24 Identities=38% Similarity=0.618 Sum_probs=22.4
Q ss_pred eEEEEcCCCCCCchHHHHHHHHHH
Q 000489 149 QSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 149 QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
..|+|+|.+|||||+.++.+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999888
No 212
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=89.34 E-value=0.23 Score=50.08 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.4
Q ss_pred CeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 148 SQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
.+.|+|.|.+|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999998877654
No 213
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.28 E-value=3.5 Score=37.31 Aligned_cols=63 Identities=27% Similarity=0.429 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000489 922 IRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSH 984 (1463)
Q Consensus 922 L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~ 984 (1463)
|+.++..|+..++.+..++...+.....+..+++.....+..+-.++.+|+.+++.+.+++..
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666677777777777777777777777777777777777777777787777777766543
No 214
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.24 E-value=43 Score=43.41 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=5.8
Q ss_pred HHhcCCCHHHHHHHH
Q 000489 356 ADLFMCDVNLLLATL 370 (1463)
Q Consensus 356 a~lLgv~~~~l~~~l 370 (1463)
..||..-+.++.+++
T Consensus 147 salls~r~~e~q~~l 161 (970)
T KOG0946|consen 147 SALLSCRPTELQDAL 161 (970)
T ss_pred HHHHhcCCHHHHHHH
Confidence 333333333333333
No 215
>PRK07261 topology modulation protein; Provisional
Probab=89.19 E-value=0.26 Score=53.14 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.1
Q ss_pred EEEEcCCCCCCchHHHHHHHHHH
Q 000489 150 SILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 150 sIiisGeSGaGKTe~~k~~~~yl 172 (1463)
-|+|.|.||||||+.++.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999986654
No 216
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=89.19 E-value=0.5 Score=53.08 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 137 ASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 137 ~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
.+.+.+........|+|.|++|+|||..++.+.+++..
T Consensus 27 ~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 27 AALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444567889999999999999999999988753
No 217
>PRK09099 type III secretion system ATPase; Provisional
Probab=89.10 E-value=0.71 Score=56.93 Aligned_cols=36 Identities=11% Similarity=0.165 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 137 ASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 137 ~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
.+...+..-++.|.+.|.|.||+|||+..+.+..+.
T Consensus 152 ~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~ 187 (441)
T PRK09099 152 RIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARGT 187 (441)
T ss_pred eeccceeeecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345556566799999999999999999987776544
No 218
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=89.01 E-value=0.71 Score=53.97 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
+..--|-|+|.||||||+.++.+...|...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 456778899999999999999988777643
No 219
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.01 E-value=5.1 Score=49.98 Aligned_cols=75 Identities=23% Similarity=0.399 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000489 919 MAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENN---NTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 993 (1463)
Q Consensus 919 ~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~---~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lk 993 (1463)
++.|+.+|..|+..+++++..++.|+.++.++..+.. ....+++..+.++..|+.++.+-.+.+..|+..+..++
T Consensus 431 ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 431 VERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444332221 12233444555555555555555555555555555444
No 220
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=88.86 E-value=53 Score=38.26 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHH
Q 000489 919 MAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKEN 954 (1463)
Q Consensus 919 ~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~ 954 (1463)
+..+++||..|+.+++++..+..|.+++-..+.++.
T Consensus 136 i~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrEL 171 (401)
T PF06785_consen 136 IRHLREENQCLQLQLDALQQECGEKEEESQTLNREL 171 (401)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHH
Confidence 444555555555555555555544444444443333
No 221
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=88.86 E-value=0.32 Score=52.49 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 148 SQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
..-|+++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999887654
No 222
>PRK08118 topology modulation protein; Reviewed
Probab=88.85 E-value=0.31 Score=52.34 Aligned_cols=25 Identities=24% Similarity=0.512 Sum_probs=22.0
Q ss_pred eEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 149 QSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 149 QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
+-|+|.|.||||||+.+|.+-+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999988763
No 223
>PRK06547 hypothetical protein; Provisional
Probab=88.84 E-value=0.55 Score=50.65 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=24.4
Q ss_pred cCCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 145 EHQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 145 ~~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
.+...-|+|+|.||||||+.++.+.+-+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5667889999999999999999987764
No 224
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=88.64 E-value=0.26 Score=55.27 Aligned_cols=19 Identities=37% Similarity=0.697 Sum_probs=15.9
Q ss_pred EEEEcCCCCCCchHHHHHH
Q 000489 150 SILVSGESGAGKTETTKLI 168 (1463)
Q Consensus 150 sIiisGeSGaGKTe~~k~~ 168 (1463)
-|||||-||||||++.+-+
T Consensus 3 lvIVTGlSGAGKsvAl~~l 21 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL 21 (286)
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 4899999999999886543
No 225
>PRK14737 gmk guanylate kinase; Provisional
Probab=88.51 E-value=0.28 Score=53.61 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 148 SQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
.=-|||+|.||||||+.++.+++.+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4469999999999999999998765
No 226
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=88.50 E-value=0.6 Score=55.00 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=24.2
Q ss_pred CeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 148 SQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
...|+|+|..|||||+..+.+++++..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 357999999999999999999999864
No 227
>PRK00131 aroK shikimate kinase; Reviewed
Probab=88.46 E-value=0.37 Score=51.57 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 147 QSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 147 ~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
....|+|.|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998887
No 228
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=88.42 E-value=20 Score=40.58 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000489 962 REVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 993 (1463)
Q Consensus 962 ~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lk 993 (1463)
.-++.++...+..++.|+.+++.++.|+....
T Consensus 98 ~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 98 NFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555443
No 229
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=88.35 E-value=0.38 Score=51.82 Aligned_cols=24 Identities=42% Similarity=0.648 Sum_probs=22.8
Q ss_pred EEEEcCCCCCCchHHHHHHHHHHH
Q 000489 150 SILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 150 sIiisGeSGaGKTe~~k~~~~yla 173 (1463)
++++.|.||.|||+.++.+-++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999997
No 230
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.31 E-value=0.69 Score=56.18 Aligned_cols=56 Identities=21% Similarity=0.355 Sum_probs=40.1
Q ss_pred HHHhhCCCCCCCChhHHHHHHHHHHHHHh-cCCCeEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 116 MEQYKGAPFGELSPHVFAVADASYRAMIS-EHQSQSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 116 ~~~y~~~~~~~l~PHi~avA~~Ay~~m~~-~~~~QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
.++|+-..+.++--|-..+. ..+.+.. .+-+++++++|+.|+|||+.++.+.+.|-
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~--~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVT--AISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred HHHhCCCchhhccChHHHHH--HHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 46777777766653333332 2444444 35689999999999999999999999885
No 231
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.29 E-value=1.5e+02 Score=42.70 Aligned_cols=7 Identities=29% Similarity=0.601 Sum_probs=3.9
Q ss_pred HHcCCCH
Q 000489 305 DIVGISH 311 (1463)
Q Consensus 305 ~~lg~~~ 311 (1463)
..+|++.
T Consensus 141 ~~lGv~~ 147 (1311)
T TIGR00606 141 SHLGVSK 147 (1311)
T ss_pred HHhCCCH
Confidence 3466664
No 232
>PRK00889 adenylylsulfate kinase; Provisional
Probab=88.19 E-value=0.49 Score=51.05 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=25.9
Q ss_pred CCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 147 QSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 147 ~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
+...|+|.|.+|||||+.++.+..+|...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999753
No 233
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.15 E-value=73 Score=42.54 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=8.3
Q ss_pred HHHhcCCCHHHHHH
Q 000489 1268 RLRENHVPSFFIRK 1281 (1463)
Q Consensus 1268 ~L~~~~V~~~l~~Q 1281 (1463)
.+...+|++.+++|
T Consensus 851 ~~~~~n~ne~~vq~ 864 (1072)
T KOG0979|consen 851 ALKFENVNEDAVQQ 864 (1072)
T ss_pred HHHHhcCChHHHHH
Confidence 55566666665544
No 234
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=88.13 E-value=0.31 Score=53.25 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=19.6
Q ss_pred EEEcCCCCCCchHHHHHHHHHH
Q 000489 151 ILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yl 172 (1463)
|.|+|-||||||+.++.+.+.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999887764
No 235
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.09 E-value=71 Score=38.80 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=7.2
Q ss_pred HHHhHHHHHHHHHH
Q 000489 981 KLSHLEDENHVLRQ 994 (1463)
Q Consensus 981 ~l~~Le~E~~~Lkq 994 (1463)
.+..+.++|..|..
T Consensus 503 Dyqairqen~~L~~ 516 (521)
T KOG1937|consen 503 DYQAIRQENDQLFS 516 (521)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555544
No 236
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=88.08 E-value=0.32 Score=55.96 Aligned_cols=20 Identities=30% Similarity=0.665 Sum_probs=16.4
Q ss_pred eEEEEcCCCCCCchHHHHHH
Q 000489 149 QSILVSGESGAGKTETTKLI 168 (1463)
Q Consensus 149 QsIiisGeSGaGKTe~~k~~ 168 (1463)
+-|||||-||||||++.+.+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL 21 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH
Confidence 46999999999999875543
No 237
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.05 E-value=31 Score=45.74 Aligned_cols=18 Identities=11% Similarity=0.462 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000489 867 ISKLQKLLESLNLELDAA 884 (1463)
Q Consensus 867 ~~~Lq~~le~l~~eL~~~ 884 (1463)
+..|...++.+.++++..
T Consensus 204 l~~L~~~~~~l~kdVE~~ 221 (1072)
T KOG0979|consen 204 LNRLEDEIDKLEKDVERV 221 (1072)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555433
No 238
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=87.98 E-value=0.29 Score=53.46 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 148 SQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
.+.|+|.|.||||||+..+.+...+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3579999999999999999885543
No 239
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=87.97 E-value=44 Score=36.25 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q 000489 965 EQKCSSLQQNMQSLEEKLSHLEDE 988 (1463)
Q Consensus 965 e~~i~~L~~e~~~Lee~l~~Le~E 988 (1463)
+..+..|+.+.+++++++.....+
T Consensus 164 ERsVakLeke~DdlE~kl~~~k~k 187 (205)
T KOG1003|consen 164 ERRVAKLEKERDDLEEKLEEAKEK 187 (205)
T ss_pred HHHHHHHcccHHHHHHhhHHHHHH
Confidence 344444555555555544443333
No 240
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=87.95 E-value=0.36 Score=53.49 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=21.6
Q ss_pred CeEEE--EcCCCCCCchHHHHHHHHHHH
Q 000489 148 SQSIL--VSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 148 ~QsIi--isGeSGaGKTe~~k~~~~yla 173 (1463)
.++|| |+|-||||||+.|+.+..-|-
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 44444 699999999999999988885
No 241
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=87.86 E-value=0.28 Score=52.18 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.8
Q ss_pred EEEcCCCCCCchHHHHHHHHHHH
Q 000489 151 ILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla 173 (1463)
|++.|.||||||+.++.+-+.+-
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 68899999999999999988873
No 242
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=87.86 E-value=90 Score=39.74 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000489 919 MAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQ 972 (1463)
Q Consensus 919 ~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~ 972 (1463)
..-|+.|+..|.+++++...+..+.++++..++.+.+.+..+...++.++..++
T Consensus 706 ~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k 759 (961)
T KOG4673|consen 706 LSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELK 759 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666555555555555555555544444443
No 243
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=87.84 E-value=0.3 Score=50.60 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.5
Q ss_pred EEEcCCCCCCchHHHHHHHHHHH
Q 000489 151 ILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla 173 (1463)
|+|.|.||||||+.++.+++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 78999999999999999988763
No 244
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=87.75 E-value=94 Score=39.82 Aligned_cols=14 Identities=36% Similarity=0.382 Sum_probs=6.2
Q ss_pred HHhHHHHHHHHHHh
Q 000489 982 LSHLEDENHVLRQK 995 (1463)
Q Consensus 982 l~~Le~E~~~Lkqq 995 (1463)
+..|+.++..++.+
T Consensus 339 v~~L~~eL~~~r~e 352 (522)
T PF05701_consen 339 VSSLEAELNKTRSE 352 (522)
T ss_pred HhhHHHHHHHHHHH
Confidence 34444444444443
No 245
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.74 E-value=1e+02 Score=40.22 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHHH
Q 000489 915 ELVAMAEIRKENAVLKSSLDSLEKKNSTLE 944 (1463)
Q Consensus 915 ~~~~~~~L~~e~~~Lk~e~~~l~~~~~ele 944 (1463)
+..+..++..+...++.+++.+.....+.-
T Consensus 804 ~~~~l~~~q~e~~~~keq~~t~~~~tsa~a 833 (970)
T KOG0946|consen 804 ESTRLQELQSELTQLKEQIQTLLERTSAAA 833 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444444555555555544444444333
No 246
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=87.65 E-value=0.41 Score=50.07 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=21.5
Q ss_pred EEEcCCCCCCchHHHHHHHHHHH
Q 000489 151 ILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla 173 (1463)
|.|||.+|||||+-++.+-+++-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 88999999999999999998885
No 247
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=87.63 E-value=0.38 Score=47.51 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.5
Q ss_pred EEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 151 ILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
|.|.|+||.|||..++.+.++|...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6799999999999999999988754
No 248
>PF05729 NACHT: NACHT domain
Probab=87.62 E-value=0.44 Score=50.22 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.5
Q ss_pred EEEEcCCCCCCchHHHHHHHHHHHHhh
Q 000489 150 SILVSGESGAGKTETTKLIMQYLTFVG 176 (1463)
Q Consensus 150 sIiisGeSGaGKTe~~k~~~~yla~~~ 176 (1463)
-++|+|+.|+|||+.++.++..++.-.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 479999999999999999988887643
No 249
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=87.61 E-value=91 Score=39.51 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 000489 953 ENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQKALS 998 (1463)
Q Consensus 953 ~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lkqq~~~ 998 (1463)
++..+....+....++.+|+.+++.+++.+.+-..|...|..++.+
T Consensus 358 Ek~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~k 403 (546)
T PF07888_consen 358 EKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGK 403 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455678888888888888877777777777766644
No 250
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=87.61 E-value=54 Score=41.91 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=15.2
Q ss_pred CCcccccchhhhhhchHHHHHHHhhcCc
Q 000489 1302 RECCTFSNGEYVKSGLAELEKWIVSAKE 1329 (1463)
Q Consensus 1302 ~~~cs~s~G~qIr~nls~Le~W~~~~~l 1329 (1463)
+|..-||| .++-.|+.+.|+
T Consensus 756 ~DvlVWsN--------~RvirWV~~igL 775 (916)
T KOG0249|consen 756 TDVLVWSN--------DRVIRWVQSIGL 775 (916)
T ss_pred ccceEeec--------HHHHHHHHhcCH
Confidence 46677888 456679999888
No 251
>PF13245 AAA_19: Part of AAA domain
Probab=87.42 E-value=0.67 Score=42.83 Aligned_cols=28 Identities=32% Similarity=0.339 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 147 QSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 147 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
.+...+|.|..|+|||++...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4666778999999999888888888874
No 252
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=87.37 E-value=2 Score=52.97 Aligned_cols=41 Identities=22% Similarity=0.308 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 132 FAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 132 ~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
|...-.|...+..-.+.|.+.|.|.||+|||+..+.+++..
T Consensus 141 l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 141 FSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred ccchhHHhhhcceecCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 33344577777777899999999999999999999888765
No 253
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=87.33 E-value=0.31 Score=57.63 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=24.7
Q ss_pred CeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 148 SQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
.-++-+-||||||||.|+..||+-|..-
T Consensus 36 GEtlAlVGESGSGKSvTa~sim~LLp~~ 63 (534)
T COG4172 36 GETLALVGESGSGKSVTALSILGLLPSP 63 (534)
T ss_pred CCEEEEEecCCCCccHHHHHHHHhcCCC
Confidence 4578888999999999999999999863
No 254
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=87.29 E-value=45 Score=44.93 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=9.0
Q ss_pred HHcCCCHHHHHHHHHHHH
Q 000489 305 DIVGISHEDQEAIFRTLA 322 (1463)
Q Consensus 305 ~~lg~~~~~~~~i~~ila 322 (1463)
+.+-.++.+|.+||.-++
T Consensus 100 DkVFGpes~Q~d~Y~~~v 117 (1041)
T KOG0243|consen 100 DKVFGPESQQEDLYDQAV 117 (1041)
T ss_pred ceeeCcchhHHHHHHHHH
Confidence 333344445666665443
No 255
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=87.27 E-value=5.1 Score=50.84 Aligned_cols=124 Identities=14% Similarity=0.174 Sum_probs=86.6
Q ss_pred ccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHhHHHHHhhhccCCcccccchhhhhhchHHHHHHHhhcCcc
Q 000489 1251 HTSQWDNIIKFLDSLMRRLRENHVPSFFIRKLITQVFSFINISLFNSLLLRRECCTFSNGEYVKSGLAELEKWIVSAKEE 1330 (1463)
Q Consensus 1251 ~~~~~~~il~~L~~~~~~L~~~~V~~~l~~Q~f~QlF~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~Le~W~~~~~l~ 1330 (1463)
.+++....+..|...+..|+.. +++.....+..++..-|+-.+++.++.+. -.|..-|.|+.+=+..|-..+..
T Consensus 353 ~S~el~~~L~~L~~~L~~L~~~-L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~~~L~~~~~~---- 426 (494)
T PF04437_consen 353 PSPELVPALSLLRSRLSFLERS-LPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDMRALFSVFSQ---- 426 (494)
T ss_dssp --GGGHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHHHHHHTTS------
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHHHHHHHHHHh----
Confidence 4467788999999999999999 99999999999999999999999999876 46666677777666554444433
Q ss_pred cccccHHhhHHHHHHHHHHhhcccCccCH--------------HHHHHcc-CCCCCHHHHHHHHh
Q 000489 1331 FAGTSWHELNYIRQAVGFLVIHQKRKKSL--------------DEIRQDL-CPALTVRQIYRICT 1380 (1463)
Q Consensus 1331 ~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~--------------~~i~~~~-c~~Ls~~Ql~kIL~ 1380 (1463)
+....-.++..+.+++.||-++..+.... .+++.+. =..||+.++.+||.
T Consensus 427 ~~~~p~~~f~~l~E~~~LL~L~~~~~~~~~~~l~~~~~~~~~~~~~l~~lgI~~Ls~~ea~~vL~ 491 (494)
T PF04437_consen 427 YTPRPEAFFKRLREACKLLNLPYGSAKLLKEFLSKSYIKNENARKLLEELGISHLSPSEARDVLY 491 (494)
T ss_dssp TTSGG-HHHHHHHHHHHHHGGGG-CGG--TTTTSHHHHHHT--SHHHHHTT-SSS-HHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHcCCCCcchhhhHHHHhhhhccchHHHHHHHHCCCCcCCHHHHHHHHH
Confidence 44445589999999999999986544322 1232222 25788888888875
No 256
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.22 E-value=0.85 Score=51.86 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 135 ADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 135 A~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
|-.+.+.+.......+++|.|++|+|||..+..+.+++..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3445555555555679999999999999999988887764
No 257
>PRK14738 gmk guanylate kinase; Provisional
Probab=87.20 E-value=0.43 Score=53.07 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQY 171 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~y 171 (1463)
....-|||+|.||||||+.++.++..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46788999999999999988888764
No 258
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=87.19 E-value=1.6e+02 Score=41.89 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 148 SQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
+.-+-|+|-.|||||+.-++|.=|.
T Consensus 17 DG~t~i~GTNG~GKTTlLRlip~FY 41 (1201)
T PF12128_consen 17 DGHTHICGTNGVGKTTLLRLIPFFY 41 (1201)
T ss_pred CCceeeecCCCCcHHHHHHHHHHhc
Confidence 3446789999999999999887666
No 259
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=87.10 E-value=0.63 Score=57.34 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHH
Q 000489 131 VFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQY 171 (1463)
Q Consensus 131 i~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~y 171 (1463)
++.+.-.|...+..-++.|.+.|.|.||+|||+..+.+..+
T Consensus 151 ~l~TGi~aID~l~~I~~GqrigI~G~sG~GKSTLl~~I~g~ 191 (451)
T PRK05688 151 PLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRF 191 (451)
T ss_pred CcccceeeecceEEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44555566677777789999999999999999998877654
No 260
>PLN03025 replication factor C subunit; Provisional
Probab=87.10 E-value=0.68 Score=55.22 Aligned_cols=56 Identities=20% Similarity=0.376 Sum_probs=40.0
Q ss_pred HHHhhCCCCCCCChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 116 MEQYKGAPFGELSPHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 116 ~~~y~~~~~~~l~PHi~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
.++|+-..+.++-.|-=.+ ...+.+...+.-..++++|++|+|||+.++.+.+.+.
T Consensus 4 ~~kyrP~~l~~~~g~~~~~--~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAV--SRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred hhhcCCCCHHHhcCcHHHH--HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567666666654443322 2345566666667899999999999999999988874
No 261
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.10 E-value=28 Score=36.62 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=6.5
Q ss_pred HhHHHHHHHHHHh
Q 000489 983 SHLEDENHVLRQK 995 (1463)
Q Consensus 983 ~~Le~E~~~Lkqq 995 (1463)
.+.+.|+..|+..
T Consensus 136 rkke~E~~kLk~r 148 (151)
T PF11559_consen 136 RKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555543
No 262
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=87.09 E-value=24 Score=42.98 Aligned_cols=41 Identities=17% Similarity=0.421 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000489 757 IQSNIRGFSIRERFLHRKRHKAATVIQACWRMCKFRSAFQH 797 (1463)
Q Consensus 757 iQs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~y~~ 797 (1463)
.+.++-.+.+-.++.+..++.||.++|..|.-|+..+-+++
T Consensus 345 aEKhVhNFMmDtqLTk~~KnAAA~VLqeTW~i~K~trl~~k 385 (489)
T KOG3684|consen 345 AEKHVHNFMMDTQLTKEHKNAAANVLQETWLIYKHTKLVSK 385 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 35566666666677777778899999999998886665533
No 263
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=87.08 E-value=0.6 Score=56.65 Aligned_cols=36 Identities=28% Similarity=0.548 Sum_probs=29.5
Q ss_pred HHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 139 YRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 139 y~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
++.....+.+.+++|+|++|+|||.+++.+++.|..
T Consensus 31 l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 31 LRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 334444567889999999999999999999998854
No 264
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=87.04 E-value=1e+02 Score=39.37 Aligned_cols=6 Identities=0% Similarity=-0.019 Sum_probs=2.4
Q ss_pred EEEecC
Q 000489 572 IRCVKP 577 (1463)
Q Consensus 572 irCIkP 577 (1463)
|.|.-|
T Consensus 336 ~n~~~~ 341 (961)
T KOG4673|consen 336 TNVSDS 341 (961)
T ss_pred ccccCc
Confidence 444333
No 265
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=86.99 E-value=0.4 Score=57.69 Aligned_cols=26 Identities=35% Similarity=0.664 Sum_probs=23.5
Q ss_pred CeEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 148 SQSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
...|+|+|++|||||++.+.+++++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 56799999999999999999988874
No 266
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=86.92 E-value=0.47 Score=49.91 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=22.1
Q ss_pred EEEcCCCCCCchHHHHHHHHHHHH
Q 000489 151 ILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
|+|+|.||||||+.++.+..++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999863
No 267
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.88 E-value=31 Score=41.79 Aligned_cols=12 Identities=42% Similarity=0.756 Sum_probs=5.8
Q ss_pred HHHHHhhcCCCc
Q 000489 603 AVRISLAGYPTR 614 (1463)
Q Consensus 603 ~iri~~~gyp~r 614 (1463)
-|||-|.|-|.|
T Consensus 104 ~irivRd~~pnr 115 (493)
T KOG0804|consen 104 DIRIVRDGMPNR 115 (493)
T ss_pred eeEEeecCCCce
Confidence 344444555544
No 268
>PF12846 AAA_10: AAA-like domain
Probab=86.84 E-value=0.49 Score=55.37 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=25.8
Q ss_pred CeEEEEcCCCCCCchHHHHHHHHHHHHhh
Q 000489 148 SQSILVSGESGAGKTETTKLIMQYLTFVG 176 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~yla~~~ 176 (1463)
|..++|.|.||||||++++.++..++..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g 29 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG 29 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 45689999999999999999999988765
No 269
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.79 E-value=15 Score=40.11 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHH
Q 000489 920 AEIRKENAVLKSSLDSLEKKNSTLELELIKAQKEN 954 (1463)
Q Consensus 920 ~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~ 954 (1463)
.+|.++++.++.++++.+++++.++.+...+++..
T Consensus 152 eeL~~eleele~e~ee~~erlk~le~E~s~LeE~~ 186 (290)
T COG4026 152 EELLKELEELEAEYEEVQERLKRLEVENSRLEEML 186 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555554444443333
No 270
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=86.78 E-value=1.2 Score=58.21 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 131 VFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 131 i~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
+-.|+..-...+...+.+.++.|+|.+|.|||.+++.+++-|...
T Consensus 764 IeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 764 IKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 445543333333334555667899999999999999999998653
No 271
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=86.70 E-value=0.42 Score=54.35 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=26.6
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHHHHhhc
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYLTFVGG 177 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~ 177 (1463)
.+..++-+-||||+|||+++|.+++-+--.+|
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G 68 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc
Confidence 46778888999999999999999988764443
No 272
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.66 E-value=0.74 Score=57.07 Aligned_cols=54 Identities=15% Similarity=0.340 Sum_probs=38.7
Q ss_pred HHhhCCCCCCC--ChhHHHHHHHHHHHHHhcC-CCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 117 EQYKGAPFGEL--SPHVFAVADASYRAMISEH-QSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 117 ~~y~~~~~~~l--~PHi~avA~~Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
++|+-..+.++ ..|+.+. .+.+...+ -.+++|++|+.|.|||+.++.+.+.|-.
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHhCCCCHHHHhChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46766655554 4566553 44444444 4788999999999999999999988854
No 273
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=86.65 E-value=1.4e+02 Score=40.80 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhcCC
Q 000489 1259 IKFLDSLMRRLRENHV 1274 (1463)
Q Consensus 1259 l~~L~~~~~~L~~~~V 1274 (1463)
+..|+...++|....+
T Consensus 1023 v~~L~qlr~~l~k~~l 1038 (1317)
T KOG0612|consen 1023 VMELSQLRTKLNKLRL 1038 (1317)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3344444444443333
No 274
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=86.52 E-value=1.1e+02 Score=39.54 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=5.0
Q ss_pred HHHhHHHHHHHHH
Q 000489 981 KLSHLEDENHVLR 993 (1463)
Q Consensus 981 ~l~~Le~E~~~Lk 993 (1463)
++.++...+..++
T Consensus 419 kL~~~~~~L~~ik 431 (569)
T PRK04778 419 KLERYRNKLHEIK 431 (569)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 275
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=86.51 E-value=71 Score=37.13 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000489 959 EKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQ 994 (1463)
Q Consensus 959 ~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lkq 994 (1463)
+.+.+...+...|+.++++.+..-+-++.|+..|+.
T Consensus 245 k~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLke 280 (561)
T KOG1103|consen 245 KLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKE 280 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666777777777666667777776664
No 276
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=86.50 E-value=0.36 Score=52.16 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.0
Q ss_pred eEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 149 QSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 149 QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
+-|+|.|.||||||+.++.+++.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCc
Confidence 4689999999999999999988653
No 277
>PRK06217 hypothetical protein; Validated
Probab=86.48 E-value=0.44 Score=51.89 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.4
Q ss_pred EEEEcCCCCCCchHHHHHHHHHHH
Q 000489 150 SILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 150 sIiisGeSGaGKTe~~k~~~~yla 173 (1463)
-|+|+|-||||||+.++.+-+.|-
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 399999999999999999988763
No 278
>PRK06936 type III secretion system ATPase; Provisional
Probab=86.40 E-value=1.2 Score=54.84 Aligned_cols=41 Identities=10% Similarity=0.202 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 132 FAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 132 ~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
+...-.+...+..-.+.|.+.|.|.||+|||+..+.+.++.
T Consensus 146 l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~ 186 (439)
T PRK06936 146 LSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSA 186 (439)
T ss_pred CcCCcceeeeeEEecCCCEEEEECCCCCChHHHHHHHhcCC
Confidence 33344455566666789999999999999999988776654
No 279
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=86.38 E-value=0.9 Score=48.34 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHhhc
Q 000489 133 AVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGG 177 (1463)
Q Consensus 133 avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~ 177 (1463)
+|...+...| ...+.-.|-++|-||||||+.|..+=+.|...|-
T Consensus 9 ~v~~~~r~~~-~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~ 52 (197)
T COG0529 9 SVTKQEREAL-KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGY 52 (197)
T ss_pred ccCHHHHHHH-hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCC
Confidence 4433333333 3456779999999999999999999999987753
No 280
>PRK11281 hypothetical protein; Provisional
Probab=86.37 E-value=1.1e+02 Score=42.59 Aligned_cols=19 Identities=21% Similarity=0.092 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 000489 870 LQKLLESLNLELDAAKLAT 888 (1463)
Q Consensus 870 Lq~~le~l~~eL~~~~~~~ 888 (1463)
|+..+.+++.++++.++.+
T Consensus 126 LEq~L~q~~~~Lq~~Q~~L 144 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDL 144 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333
No 281
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=86.36 E-value=0.47 Score=49.71 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.5
Q ss_pred EEEEcCCCCCCchHHHHHHHHHH
Q 000489 150 SILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 150 sIiisGeSGaGKTe~~k~~~~yl 172 (1463)
+|+|.|.+|||||+.+|.+-++|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998887
No 282
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=86.35 E-value=0.4 Score=49.56 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEcCCCCCCchHHHHHHHHHHH
Q 000489 151 ILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla 173 (1463)
|++.|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999999887664
No 283
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=86.32 E-value=0.52 Score=50.70 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=23.5
Q ss_pred EEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 150 SILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 150 sIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
-|.|+|.||||||+..+.++..|...
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHHhhc
Confidence 67899999999999999999999754
No 284
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.26 E-value=37 Score=41.12 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=13.5
Q ss_pred ccccChHHHHHHhhhccCccccccc
Q 000489 482 IEFIDNQDVLDLIEKVTYQTNTFLD 506 (1463)
Q Consensus 482 i~~~dn~~~l~lie~~~~Gil~lLd 506 (1463)
|.|.|+.+.....+.-.+-=|+=||
T Consensus 120 IkFr~q~da~~Fy~efNGk~Fn~le 144 (493)
T KOG0804|consen 120 IKFRDQADADTFYEEFNGKQFNSLE 144 (493)
T ss_pred EEeccchhHHHHHHHcCCCcCCCCC
Confidence 5666666666665543222355555
No 285
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=86.23 E-value=0.56 Score=49.12 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=22.8
Q ss_pred EEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 151 ILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
++|+|+||+|||+.++.++..++.-
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~ 26 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK 26 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999998763
No 286
>PRK03846 adenylylsulfate kinase; Provisional
Probab=86.22 E-value=0.85 Score=50.35 Aligned_cols=31 Identities=23% Similarity=0.361 Sum_probs=27.2
Q ss_pred cCCCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 145 EHQSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 145 ~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
..+...|.|+|.||||||+.++.+...|...
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~ 51 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4577899999999999999999999988654
No 287
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=86.19 E-value=0.49 Score=57.14 Aligned_cols=28 Identities=25% Similarity=0.461 Sum_probs=25.4
Q ss_pred CCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 147 QSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 147 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
...-|+|+|++|||||++.+.+++++..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999999864
No 288
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=86.19 E-value=1.2e+02 Score=39.52 Aligned_cols=77 Identities=26% Similarity=0.293 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 000489 922 IRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQKALS 998 (1463)
Q Consensus 922 L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lkqq~~~ 998 (1463)
+.++...+..-++.......+....+..++.+.++...++++.+..+.++..+++....+...++.|+..|+.++..
T Consensus 543 l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~ 619 (698)
T KOG0978|consen 543 LIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLER 619 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555666666666667777777777777777777777778888888888877654
No 289
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=86.17 E-value=0.67 Score=55.37 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=22.3
Q ss_pred eEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 149 QSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 149 QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
..|+|+|+.|||||+..+.++.++.
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 4599999999999999999888774
No 290
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=86.14 E-value=1.6 Score=53.81 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 136 DASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 136 ~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
-.+...+..-++.|.+.|.|.||+|||+..+.+....
T Consensus 133 ~~~id~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 169 (422)
T TIGR02546 133 VRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGA 169 (422)
T ss_pred ceeehhhccccCCCEEEEECCCCCChHHHHHHHhCCC
Confidence 3456666667889999999999999999988877654
No 291
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=86.02 E-value=93 Score=38.02 Aligned_cols=16 Identities=31% Similarity=0.355 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 000489 396 DALAKTVYSRLFDWLV 411 (1463)
Q Consensus 396 d~lak~lY~~lF~wiv 411 (1463)
-+|++.+|+-|=+|+=
T Consensus 50 ~Tlsed~ysTldnll~ 65 (527)
T PF15066_consen 50 FTLSEDIYSTLDNLLG 65 (527)
T ss_pred chhhHHHHhhhhhccC
Confidence 3688888888777654
No 292
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=85.94 E-value=1.2e+02 Score=39.04 Aligned_cols=183 Identities=20% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHH
Q 000489 815 KRELRRLKQVANEAGALRLAKNKLERQLEDLTWRVQLEKKLRVSTEEAKSVE---ISKLQKLLESLNLELDAAKLATINE 891 (1463)
Q Consensus 815 rr~~~~lk~~a~~~~~l~~~~~~Le~ki~el~~rl~~ek~l~~~~~eak~~E---~~~Lq~~le~l~~eL~~~~~~~~~e 891 (1463)
+..+..-.....+-..+......|...-+++..-+.....-..+++...+.. ......+++++..+++..+......
T Consensus 411 ~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~EL 490 (786)
T PF05483_consen 411 KKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTEL 490 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhHHHHHHHhH-----------H
Q 000489 892 CNKNAMLQNQLELSLKEKSAL------------------ERELVAMAEIRKENAVLKSSLDSLEKKNS-----------T 942 (1463)
Q Consensus 892 ~~~~~~~~~ele~~~~e~~~l------------------~e~~~~~~~L~~e~~~Lk~e~~~l~~~~~-----------e 942 (1463)
......+..+-..+..+.... +.....++.|+..+..|+.+++.+.+++. .
T Consensus 491 t~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~k 570 (786)
T PF05483_consen 491 TVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDK 570 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 000489 943 LELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQKAL 997 (1463)
Q Consensus 943 le~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lkqq~~ 997 (1463)
-+......+-+.......+..++.++..|+.+++.....+..|+.+|+.|+.+..
T Consensus 571 sEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~ 625 (786)
T PF05483_consen 571 SEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKIT 625 (786)
T ss_pred HHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
No 293
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=85.86 E-value=0.57 Score=50.31 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.1
Q ss_pred EEEcCCCCCCchHHHHHHHHHHHH
Q 000489 151 ILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
|+|+|++|+|||+..+.++++|..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999998864
No 294
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.82 E-value=90 Score=37.69 Aligned_cols=17 Identities=29% Similarity=0.159 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000489 865 VEISKLQKLLESLNLEL 881 (1463)
Q Consensus 865 ~E~~~Lq~~le~l~~eL 881 (1463)
.++..++-+++.+..+.
T Consensus 297 le~Enlqmr~qqleeen 313 (502)
T KOG0982|consen 297 LEKENLQMRDQQLEEEN 313 (502)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 295
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=85.81 E-value=0.59 Score=53.45 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.2
Q ss_pred EEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 151 ILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
|.|+|-||||||+.++.+.+.|...
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 7899999999999999999888643
No 296
>PRK12377 putative replication protein; Provisional
Probab=85.79 E-value=1.2 Score=51.06 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 129 PHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 129 PHi~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
-|+++.|..-...... ..++++++|.+|+|||..+..|.++|..-
T Consensus 84 ~~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 84 RYALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred HHHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4566665554444332 35799999999999999999999999753
No 297
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.74 E-value=1e+02 Score=38.32 Aligned_cols=79 Identities=22% Similarity=0.259 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000489 915 ELVAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 993 (1463)
Q Consensus 915 ~~~~~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lk 993 (1463)
..++++..++++..|+..+..+...+.+.+..+..+++....+.......+.++..+.--++...+++.+++.+++.-.
T Consensus 329 ~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh 407 (654)
T KOG4809|consen 329 RLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAH 407 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888887777776666665555555555555555555566666666666777777777777666543
No 298
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=85.59 E-value=0.55 Score=56.83 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=24.3
Q ss_pred CeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 148 SQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
+--|+|+|++|||||++.+.+++|+..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 447999999999999999999999965
No 299
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=85.57 E-value=0.91 Score=57.19 Aligned_cols=56 Identities=21% Similarity=0.451 Sum_probs=39.3
Q ss_pred HHhhCCCCCCCC--hhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 117 EQYKGAPFGELS--PHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 117 ~~y~~~~~~~l~--PHi~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
++|+-..+.++. +|+...-..| +...+-.++++++|+.|.|||++++.+.+.|-..
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~a---i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYT---ILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHH---HHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 456665555553 4444432232 2345568999999999999999999999998653
No 300
>PRK12608 transcription termination factor Rho; Provisional
Probab=85.55 E-value=0.69 Score=55.47 Aligned_cols=42 Identities=17% Similarity=0.074 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 133 AVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 133 avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
.++.++...|.--++-|-++|.|++|+|||+.++.+.+.+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 577888888888899999999999999999999998887754
No 301
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=85.52 E-value=28 Score=43.45 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=13.8
Q ss_pred hhhhhchHHHHHHHhhcCc
Q 000489 1311 EYVKSGLAELEKWIVSAKE 1329 (1463)
Q Consensus 1311 ~qIr~nls~Le~W~~~~~l 1329 (1463)
+-+|.-=+.+-+|++...+
T Consensus 710 ~Vv~WTnhrvmeWLrsiDL 728 (861)
T KOG1899|consen 710 VVVRWTNHRVMEWLRSIDL 728 (861)
T ss_pred HHHHhhhHHHHHHHHhccH
Confidence 3455555788899998766
No 302
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=85.37 E-value=12 Score=36.29 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000489 922 IRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVL 992 (1463)
Q Consensus 922 L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~L 992 (1463)
|-.|..+|+.+..-|++-+-+.+.....+......-...++..+++++.|.=.++.|..++..|+.|....
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666655555555544444444444445555666666666666666666666666666533
No 303
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.26 E-value=77 Score=36.42 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000489 831 LRLAKNKLERQLEDLTWRVQ 850 (1463)
Q Consensus 831 l~~~~~~Le~ki~el~~rl~ 850 (1463)
+......++++|+.|.-.+.
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~ 62 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIE 62 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443333
No 304
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=85.24 E-value=16 Score=40.41 Aligned_cols=62 Identities=24% Similarity=0.385 Sum_probs=36.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 000489 937 EKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQKALS 998 (1463)
Q Consensus 937 ~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lkqq~~~ 998 (1463)
+++.+.+..+...++.+.++...+++.++.+...|+.+.+.+..+...+-+|++.|+.++..
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 33344444444444555555556666666666666666666666666666666666665533
No 305
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=85.23 E-value=0.88 Score=58.04 Aligned_cols=30 Identities=23% Similarity=0.543 Sum_probs=25.7
Q ss_pred HhcCCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 143 ISEHQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 143 ~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
.....++.|+|.||+|+|||..|+.+.++.
T Consensus 81 l~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 81 LCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345578999999999999999999997764
No 306
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=85.21 E-value=0.69 Score=48.10 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=24.5
Q ss_pred EEEEcCCCCCCchHHHHHHHHHHHHhh
Q 000489 150 SILVSGESGAGKTETTKLIMQYLTFVG 176 (1463)
Q Consensus 150 sIiisGeSGaGKTe~~k~~~~yla~~~ 176 (1463)
.|.|.|-+|||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 378999999999999999999998765
No 307
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=85.12 E-value=0.56 Score=49.10 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.6
Q ss_pred EEEcCCCCCCchHHHHHHHHHH
Q 000489 151 ILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yl 172 (1463)
|+++|.+|||||+.++.+.+-+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 7899999999999999987764
No 308
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=85.06 E-value=0.93 Score=55.65 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=29.1
Q ss_pred HHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 141 AMISEHQSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 141 ~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
.....+.+.+++|+|.+|+|||..++.+++.+...
T Consensus 48 ~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 48 PALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred HHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 34445677899999999999999999999988543
No 309
>PRK07667 uridine kinase; Provisional
Probab=85.00 E-value=0.69 Score=50.90 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=22.8
Q ss_pred eEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 149 QSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 149 QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
--|-|+|-||||||+.|+.+.+.|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35678999999999999999999864
No 310
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=84.97 E-value=1.9 Score=53.03 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 137 ASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 137 ~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
.|...+..-++.|.+.|.|.||+|||+..+.+.++.
T Consensus 126 ~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~ 161 (413)
T TIGR03497 126 KAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNA 161 (413)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344455556789999999999999999987766543
No 311
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=84.96 E-value=0.68 Score=46.91 Aligned_cols=27 Identities=37% Similarity=0.527 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
+....|+++|+=|||||+-+|.+.+.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 567899999999999999999998877
No 312
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=84.91 E-value=1.1e+02 Score=38.20 Aligned_cols=64 Identities=20% Similarity=0.272 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000489 917 VAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEE 980 (1463)
Q Consensus 917 ~~~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee 980 (1463)
..+...+++...+++.+++..+.+++-+.....++...+.+.+.+.+.+.+..+.++.+..+++
T Consensus 347 ~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lrk 410 (570)
T COG4477 347 GSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRK 410 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445555555555555555555555444444444444444444555555444455554444443
No 313
>PRK11281 hypothetical protein; Provisional
Probab=84.83 E-value=1.1e+02 Score=42.62 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHh
Q 000489 971 LQQNMQSLEEKLSHLEDENHVLRQK 995 (1463)
Q Consensus 971 L~~e~~~Lee~l~~Le~E~~~Lkqq 995 (1463)
+.+.+..+-+.+.+....++.+.++
T Consensus 283 ~~~~N~~Ls~~L~~~t~~~~~l~~~ 307 (1113)
T PRK11281 283 ELEINLQLSQRLLKATEKLNTLTQQ 307 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555554443
No 314
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=84.83 E-value=0.8 Score=57.87 Aligned_cols=58 Identities=31% Similarity=0.465 Sum_probs=43.1
Q ss_pred HHHHhhCCCCCCCChhHHHHHHH--HHHHHHhcCC-CeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 115 MMEQYKGAPFGELSPHVFAVADA--SYRAMISEHQ-SQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 115 ~~~~y~~~~~~~l~PHi~avA~~--Ay~~m~~~~~-~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
.+++|.-....+|.-|-=.|.+- ....+..... .+-.|++|.+|+|||++.+.+.+-|
T Consensus 9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred cchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 46788888888888887666543 4444544443 5567779999999999999988776
No 315
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=84.81 E-value=0.49 Score=56.70 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 148 SQSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
...|+|+|.+|||||+..+.++.++.
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 45699999999999999999988774
No 316
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=84.78 E-value=1.1 Score=57.01 Aligned_cols=59 Identities=17% Similarity=0.330 Sum_probs=41.7
Q ss_pred HHHHhhCCCCCCCChhHHHHHHHHHHHHH-hcCCCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 115 MMEQYKGAPFGELSPHVFAVADASYRAMI-SEHQSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 115 ~~~~y~~~~~~~l~PHi~avA~~Ay~~m~-~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
..++|+...+.++--|--.+ ..+..+. ..+-.+++|++|+.|.|||+.|+.+-+.|...
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv--~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIK--KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34567766666654333333 3344444 44668999999999999999999999999654
No 317
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.77 E-value=1e+02 Score=38.35 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000489 862 AKSVEISKLQKLLESLNLELDAAK 885 (1463)
Q Consensus 862 ak~~E~~~Lq~~le~l~~eL~~~~ 885 (1463)
.-..|.+.|..++..++.++.+..
T Consensus 335 ~~~ke~kdLkEkv~~lq~~l~eke 358 (654)
T KOG4809|consen 335 SFRKENKDLKEKVNALQAELTEKE 358 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666665555544433
No 318
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=84.76 E-value=1.2 Score=52.90 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=23.6
Q ss_pred CeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 148 SQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
...|+|+|.+|||||+..+.++.++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~ 174 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVI 174 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 467999999999999999999987753
No 319
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=84.74 E-value=0.58 Score=54.29 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=24.8
Q ss_pred CCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 147 QSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 147 ~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
....|+|+|+.|||||++.+.++.++..
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cceEEEEECCCccccchHHHHHhhhccc
Confidence 5788999999999999999999887754
No 320
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=84.71 E-value=0.67 Score=50.26 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=20.7
Q ss_pred EEEcCCCCCCchHHHHHHHHHH
Q 000489 151 ILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yl 172 (1463)
|+|.|.||||||+-||.|.+.+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999885
No 321
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=84.71 E-value=1.4 Score=49.57 Aligned_cols=30 Identities=13% Similarity=0.311 Sum_probs=25.7
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
..+..++|.|++|+|||..++.+.+.+...
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~ 69 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYG 69 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 456799999999999999999998877543
No 322
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=84.61 E-value=39 Score=39.95 Aligned_cols=109 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000489 838 LERQLEDLTWRVQLEKKLRVSTEEAKSVEISKLQKLLESLNLELDAAKLATINECNKNAMLQNQLELSLKEKSALERELV 917 (1463)
Q Consensus 838 Le~ki~el~~rl~~ek~l~~~~~eak~~E~~~Lq~~le~l~~eL~~~~~~~~~e~~~~~~~~~ele~~~~e~~~l~e~~~ 917 (1463)
+..+++++.+.+. ...+....|..+|+.+-.+++..+....+...+...+......++...-.....+ ..+
T Consensus 279 m~tKveelar~Lr-------~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~ql--aLE 349 (442)
T PF06637_consen 279 MTTKVEELARSLR-------AGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQL--ALE 349 (442)
T ss_pred HHHHHHHHHHHHh-------hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHH
Q 000489 918 AMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENN 955 (1463)
Q Consensus 918 ~~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~ 955 (1463)
+...|++|.+.|.+++++.+.+++.++-++..-....+
T Consensus 350 EKaaLrkerd~L~keLeekkreleql~~q~~v~~saLd 387 (442)
T PF06637_consen 350 EKAALRKERDSLAKELEEKKRELEQLKMQLAVKTSALD 387 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
No 323
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.61 E-value=1.1 Score=56.07 Aligned_cols=57 Identities=26% Similarity=0.432 Sum_probs=40.1
Q ss_pred HHHhhCCCCCCCC--hhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 116 MEQYKGAPFGELS--PHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 116 ~~~y~~~~~~~l~--PHi~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
..+|+-..+.++- +|+-..-..|+ ...+-+|+++++|..|.|||++++++-+.|-..
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~---~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAF---TLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHH---HcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 3467666665553 55544333332 235568999999999999999999998888554
No 324
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=84.56 E-value=0.57 Score=55.58 Aligned_cols=30 Identities=23% Similarity=0.415 Sum_probs=26.7
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
+..|++=|-||||||||+....+++-+.+-
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 578999999999999999999998888654
No 325
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=84.50 E-value=1.4e+02 Score=38.65 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q 000489 966 QKCSSLQQNMQSLEEKLSHLEDE 988 (1463)
Q Consensus 966 ~~i~~L~~e~~~Lee~l~~Le~E 988 (1463)
.+...|.+.++.|++....|..-
T Consensus 242 ~Er~~L~~tVq~L~edR~~L~~T 264 (739)
T PF07111_consen 242 PEREELLETVQHLQEDRDALQAT 264 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555444444433
No 326
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=84.44 E-value=13 Score=32.82 Aligned_cols=42 Identities=29% Similarity=0.414 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000489 945 LELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLE 986 (1463)
Q Consensus 945 ~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le 986 (1463)
.++...+..+..+..+|.+.+.++..|..++..|++++.++.
T Consensus 18 eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 18 EELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444445555666666666666666666666666655543
No 327
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=84.37 E-value=0.91 Score=58.43 Aligned_cols=57 Identities=21% Similarity=0.434 Sum_probs=38.5
Q ss_pred HHhhCCCCCCCChhHHHHHHHHHHHHH-hcCCCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 117 EQYKGAPFGELSPHVFAVADASYRAMI-SEHQSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 117 ~~y~~~~~~~l~PHi~avA~~Ay~~m~-~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
++|+-..+.++--|=..+ +...++. ..+-.+++|++|.+|.|||++++.+.+.|-..
T Consensus 16 ~KyRP~~f~dliGq~~~v--~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMV--RTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred hhhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 456655555543332222 2233433 34568999999999999999999999998653
No 328
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=84.36 E-value=1.4 Score=52.21 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=36.5
Q ss_pred HHhhCCCCCCCChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 117 EQYKGAPFGELSPHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 117 ~~y~~~~~~~l~PHi~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
++|+-..+.++..|--+ -...+.....+..-.++++|++|+|||+.++.+.+.+.
T Consensus 9 ~kyrP~~~~~~~g~~~~--~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEI--VERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred hhhCCCcHHHhcCcHHH--HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 34554444555445332 23445555555444689999999999999999988874
No 329
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=84.26 E-value=0.54 Score=58.66 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=26.3
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
...+..-|-||||||||+++..+|.+|-.-
T Consensus 33 ~~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 33 EPGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 356788889999999999999999999754
No 330
>PRK04040 adenylate kinase; Provisional
Probab=84.25 E-value=0.69 Score=50.67 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=22.7
Q ss_pred eEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 149 QSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 149 QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
.-|+|+|.+|+|||+.++.+.+.|.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999999883
No 331
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=84.24 E-value=0.73 Score=51.55 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=24.8
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
.+..+.=|.||||||||+.++.++-+...
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 56788999999999999999998777653
No 332
>PRK04182 cytidylate kinase; Provisional
Probab=84.23 E-value=0.65 Score=50.00 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=20.6
Q ss_pred EEEEcCCCCCCchHHHHHHHHHH
Q 000489 150 SILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 150 sIiisGeSGaGKTe~~k~~~~yl 172 (1463)
-|+|+|.+|||||+.++.+-+.|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999997665
No 333
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=84.18 E-value=0.77 Score=49.55 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 148 SQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
++.|+|.|.+|||||+.++.+...|
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999988775
No 334
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=84.18 E-value=1.2 Score=54.73 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 136 DASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 136 ~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
-.|...+..-++.|.+.|.|.||+|||+..+.++.+.
T Consensus 125 i~~id~l~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~ 161 (411)
T TIGR03496 125 VRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMARYT 161 (411)
T ss_pred EEeecceEEEecCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455556666789999999999999999877776544
No 335
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=84.14 E-value=2.3 Score=52.61 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 132 FAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 132 ~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
+.+.-.+...+..-++.|.+.|.|.||+|||+..+.++.+.
T Consensus 142 l~tg~~vid~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 142 MEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNT 182 (438)
T ss_pred cccchhhhheeeeecCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 44556677778777899999999999999999988777654
No 336
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=84.13 E-value=0.62 Score=52.24 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 149 QSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 149 QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
--+++-|+||||||++.|+|-+-+.
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLie 52 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLIE 52 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC
Confidence 3577889999999999999866553
No 337
>PRK15453 phosphoribulokinase; Provisional
Probab=84.05 E-value=0.77 Score=52.98 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 148 SQSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
.=-|.|+|-||||||+.++.+-+-|.
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 33689999999999999988876664
No 338
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=83.97 E-value=66 Score=42.72 Aligned_cols=136 Identities=19% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHH
Q 000489 861 EAKSVEISKLQKLLESLNLELDAAKLATINECNKNAMLQNQLELSLKEKSALERE--LVAMAEIRKENAVLKSSLDSLEK 938 (1463)
Q Consensus 861 eak~~E~~~Lq~~le~l~~eL~~~~~~~~~e~~~~~~~~~ele~~~~e~~~l~e~--~~~~~~L~~e~~~Lk~e~~~l~~ 938 (1463)
|.-..|...|+.+++....+--..+......-..++.-..++....+|......+ ..+..++++....|+..+.++.+
T Consensus 20 ekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~ 99 (769)
T PF05911_consen 20 EKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSK 99 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 000489 939 KNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQKA 996 (1463)
Q Consensus 939 ~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lkqq~ 996 (1463)
++.+...+...+.........-+.++.+.......++..+..++...++||..|+-++
T Consensus 100 ~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~ 157 (769)
T PF05911_consen 100 RLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYEL 157 (769)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
No 339
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=83.97 E-value=0.75 Score=49.91 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=21.1
Q ss_pred EEEEcCCCCCCchHHHHHHHHHH
Q 000489 150 SILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 150 sIiisGeSGaGKTe~~k~~~~yl 172 (1463)
.|+|.|.+|||||+.++.+.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998776
No 340
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=83.90 E-value=0.82 Score=49.54 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 148 SQSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
...|+|.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999988774
No 341
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.86 E-value=1.4 Score=54.23 Aligned_cols=56 Identities=14% Similarity=0.349 Sum_probs=41.0
Q ss_pred HHhhCCCCCCCChhHHHHHHHHHHHHHhc-CCCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 117 EQYKGAPFGELSPHVFAVADASYRAMISE-HQSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 117 ~~y~~~~~~~l~PHi~avA~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
++|+-..+.++--|-..+ ...++++.. +-++++|++|+.|.|||+.++.+-++|-.
T Consensus 8 ~k~RP~~~~eiiGq~~~~--~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 8 RKYRPKKFADITAQEHIT--RTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HhcCCCcHhhccChHHHH--HHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 456655666655444443 246666655 56789999999999999999999988864
No 342
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=83.85 E-value=1.1e+02 Score=39.68 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000489 945 LELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLED 987 (1463)
Q Consensus 945 ~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~ 987 (1463)
.++.++....+.++-+|+..|.+..-|.-.+..-+.++..|.+
T Consensus 501 ~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~e 543 (861)
T PF15254_consen 501 IEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRE 543 (861)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHH
Confidence 3333333344444555555555555554444444444444433
No 343
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=83.85 E-value=0.74 Score=49.01 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCCchHHHHHHHH
Q 000489 148 SQSILVSGESGAGKTETTKLIMQ 170 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~ 170 (1463)
...|+|.|+||+|||++|=-+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999877665
No 344
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=83.80 E-value=0.85 Score=50.31 Aligned_cols=47 Identities=21% Similarity=0.389 Sum_probs=29.2
Q ss_pred EEEcCCCCCCchHHHHHHHHHHHHhhcccCCCCCcHHHHHHhhcc-----HHHhhcc
Q 000489 151 ILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNP-----LLEAFGN 202 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snp-----ilEaFGn 202 (1463)
|.|+|.+|||||+.++++-++ |.. .-+...+...+++.++ |.+.||.
T Consensus 2 i~itG~~gsGKst~~~~l~~~----g~~-~i~~D~i~~~~~~~~~~~~~~i~~~fG~ 53 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEEL----GAF-GISADRLAKRYTEPDSPILSELVSLLGP 53 (196)
T ss_pred EEEECCCCccHHHHHHHHHHC----CCE-EEecchHHHHHHhcCcHHHHHHHHHhCh
Confidence 789999999999988866543 211 1112345555665443 5666665
No 345
>PRK13764 ATPase; Provisional
Probab=83.74 E-value=0.84 Score=58.35 Aligned_cols=27 Identities=26% Similarity=0.572 Sum_probs=23.9
Q ss_pred CeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 148 SQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
...|+|+|.+|||||+++..++.|+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345999999999999999999999864
No 346
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=83.74 E-value=69 Score=34.61 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q 000489 915 ELVAMAEIRKENAVLKSSLDSLEKK 939 (1463)
Q Consensus 915 ~~~~~~~L~~e~~~Lk~e~~~l~~~ 939 (1463)
...++..|...|.+|+.+..+|+.-
T Consensus 53 hl~EIR~LKe~NqkLqedNqELRdL 77 (195)
T PF10226_consen 53 HLNEIRGLKEVNQKLQEDNQELRDL 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555444444443
No 347
>PRK13342 recombination factor protein RarA; Reviewed
Probab=83.58 E-value=1.1 Score=55.35 Aligned_cols=43 Identities=26% Similarity=0.423 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 129 PHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 129 PHi~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
.|+... ....+.+...+...+|++.|++|.|||+.++.+-+.+
T Consensus 18 ~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 18 EHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 454443 3556677777777899999999999999999987654
No 348
>PHA00729 NTP-binding motif containing protein
Probab=83.50 E-value=1.5 Score=49.14 Aligned_cols=28 Identities=21% Similarity=0.270 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
..-..|+|+|.+|+|||+.|..+.+.+.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3446899999999999999999998764
No 349
>PRK14527 adenylate kinase; Provisional
Probab=83.27 E-value=0.89 Score=49.83 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
.+..-|+|.|.+|||||+.++.+.+.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999987764
No 350
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=83.25 E-value=0.78 Score=49.35 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCCCchHHHHHHHHH
Q 000489 147 QSQSILVSGESGAGKTETTKLIMQY 171 (1463)
Q Consensus 147 ~~QsIiisGeSGaGKTe~~k~~~~y 171 (1463)
+---+.+.|.||||||+..|+|+.-
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 4556789999999999999988643
No 351
>PRK06761 hypothetical protein; Provisional
Probab=83.21 E-value=0.74 Score=53.45 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=23.7
Q ss_pred eEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 149 QSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 149 QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
.-|+|+|.+|||||+.++.+.+.|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46999999999999999999999864
No 352
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=83.09 E-value=1 Score=56.69 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 138 SYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 138 Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
.++.+... ..--|+|+|++|||||++...+++++.
T Consensus 233 ~l~~~~~~-~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIRR-PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 34444432 334689999999999999988888774
No 353
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=83.04 E-value=1.1 Score=48.25 Aligned_cols=27 Identities=41% Similarity=0.560 Sum_probs=23.9
Q ss_pred EEEEcCCCCCCchHHHHHHHHHHHHhh
Q 000489 150 SILVSGESGAGKTETTKLIMQYLTFVG 176 (1463)
Q Consensus 150 sIiisGeSGaGKTe~~k~~~~yla~~~ 176 (1463)
.|++.|++|+|||+.+..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 478999999999999999999888654
No 354
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=83.02 E-value=1.8 Score=53.20 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=41.9
Q ss_pred CCCHHHHHHhhCCCCCCCChhHHHHHHHHHHHHHhcC-----------CCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 110 LYNVHMMEQYKGAPFGELSPHVFAVADASYRAMISEH-----------QSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 110 ly~~~~~~~y~~~~~~~l~PHi~avA~~Ay~~m~~~~-----------~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
+.++..+..|-....-..++=+=+++..+|.++.+-. ....|++.|++|+|||+.++.+-+.+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 5577777777655433344444455555555433321 24689999999999999999886554
No 355
>PRK14974 cell division protein FtsY; Provisional
Probab=83.00 E-value=2 Score=51.29 Aligned_cols=31 Identities=32% Similarity=0.439 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHHHHhh
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYLTFVG 176 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 176 (1463)
++...|++.|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3468999999999999999999999987654
No 356
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=82.74 E-value=1.6 Score=56.79 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=28.8
Q ss_pred HHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 140 RAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 140 ~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
..+.....++.|+|.||+|+|||+.++.+.+.....
T Consensus 167 ~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~ 202 (615)
T TIGR02903 167 LAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKL 202 (615)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 344455678899999999999999999998776433
No 357
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.66 E-value=1.6 Score=55.42 Aligned_cols=56 Identities=21% Similarity=0.418 Sum_probs=39.7
Q ss_pred HHHhhCCCCCCCC--hhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 116 MEQYKGAPFGELS--PHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 116 ~~~y~~~~~~~l~--PHi~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
.++|+-..+.++- +|+...-..++ ...+-..++|++|+.|.|||+.++.+.++|-.
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~~~i---~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHAL---ETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHHHHH---HcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567766666654 55554333332 23356788999999999999999999999864
No 358
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=82.63 E-value=1.4 Score=54.33 Aligned_cols=60 Identities=28% Similarity=0.422 Sum_probs=46.7
Q ss_pred HHHHHHhhCCCCCCCChhHHHHHHH--HHH--HHHhc-CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 113 VHMMEQYKGAPFGELSPHVFAVADA--SYR--AMISE-HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 113 ~~~~~~y~~~~~~~l~PHi~avA~~--Ay~--~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
+..++.|+-....+|.-|-=.|++- +++ .|... -+++-.+|+|.||+|||++.|.+-.=|
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 4568899988889999998888764 555 33333 367889999999999999988775544
No 359
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=82.49 E-value=1.4 Score=51.45 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=24.8
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
+.+=.|+|+|.||+|||+.+..+-.+|
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467799999999999999999999888
No 360
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=82.48 E-value=78 Score=34.29 Aligned_cols=35 Identities=20% Similarity=0.456 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000489 959 EKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 993 (1463)
Q Consensus 959 ~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lk 993 (1463)
.++...+..+..++.++...+.+...+...+..|+
T Consensus 98 ~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~ 132 (177)
T PF13870_consen 98 QELKDREEELAKLREELYRVKKERDKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444443
No 361
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=82.30 E-value=73 Score=40.77 Aligned_cols=17 Identities=6% Similarity=0.208 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000489 956 NTIEKLREVEQKCSSLQ 972 (1463)
Q Consensus 956 ~l~~el~~~e~~i~~L~ 972 (1463)
++....+.+..++++|.
T Consensus 241 rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 241 KLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 33333333334444443
No 362
>PRK08356 hypothetical protein; Provisional
Probab=82.28 E-value=0.81 Score=50.39 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCCchHHHHHHHH
Q 000489 149 QSILVSGESGAGKTETTKLIMQ 170 (1463)
Q Consensus 149 QsIiisGeSGaGKTe~~k~~~~ 170 (1463)
--|+|+|.+|||||+.++++-.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999854
No 363
>PLN02939 transferase, transferring glycosyl groups
Probab=82.27 E-value=1e+02 Score=41.95 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=15.4
Q ss_pred HHHHHHhcCc-cCCCCCccCCHHHHHHHHH
Q 000489 1374 QIYRICTMYW-DDKYGTQSVSNEVVAQMRE 1402 (1463)
Q Consensus 1374 Ql~kIL~~Y~-~d~~e~~~v~~~~i~~v~~ 1402 (1463)
.+++-...|- |..+| |.+-..+..|..
T Consensus 852 ~IYAaADIFLmPSr~E--PfGLvqLEAMAy 879 (977)
T PLN02939 852 SIYAASDMFIIPSMFE--PCGLTQMIAMRY 879 (977)
T ss_pred HHHHhCCEEEECCCcc--CCcHHHHHHHHC
Confidence 3555555555 55554 566666666643
No 364
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=82.20 E-value=0.87 Score=53.25 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCCCchHHHHHH
Q 000489 148 SQSILVSGESGAGKTETTKLI 168 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~ 168 (1463)
.+-|+|+|.||||||+.++.+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l 26 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL 26 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 467999999999999999988
No 365
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=82.18 E-value=15 Score=40.16 Aligned_cols=78 Identities=21% Similarity=0.377 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHH
Q 000489 919 MAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEE----KLSHLEDENHVLRQ 994 (1463)
Q Consensus 919 ~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee----~l~~Le~E~~~Lkq 994 (1463)
+..+.+++..++..+.++..+++.......+ ..++..+..++.+++.++..|+.++....+ .+.+++.+...++.
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~-~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~ 149 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIEEAKKGREE-SEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKE 149 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444332222 234455667777777777777777665533 45566666666665
Q ss_pred hhh
Q 000489 995 KAL 997 (1463)
Q Consensus 995 q~~ 997 (1463)
.+.
T Consensus 150 ~an 152 (188)
T PF03962_consen 150 AAN 152 (188)
T ss_pred HHH
Confidence 443
No 366
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=82.16 E-value=2.2 Score=44.43 Aligned_cols=29 Identities=34% Similarity=0.472 Sum_probs=25.6
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
..+=.|+++|+=|||||+-+|-+.+.|..
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 45667999999999999999999999864
No 367
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=82.13 E-value=1.2 Score=44.66 Aligned_cols=26 Identities=38% Similarity=0.707 Sum_probs=23.9
Q ss_pred EEEcCCCCCCchHHHHHHHHHHHHhh
Q 000489 151 ILVSGESGAGKTETTKLIMQYLTFVG 176 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla~~~ 176 (1463)
|+++|.+|+|||..+..+.++|+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g 27 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKG 27 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 89999999999999999999998743
No 368
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=82.11 E-value=2.5 Score=52.36 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 132 FAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 132 ~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
|...-.+...+..-++.|.+.|.|.||+|||+..+.+..+.
T Consensus 147 l~TGi~~iD~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 187 (440)
T TIGR01026 147 LSTGVRSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARNT 187 (440)
T ss_pred ccceeeeeeeccccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444555666667889999999999999999988776653
No 369
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=82.04 E-value=53 Score=43.04 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=7.5
Q ss_pred hhhHHHHHHHHHHh
Q 000489 1130 LSNASALLCLLQRS 1143 (1463)
Q Consensus 1130 LSN~~~Ll~~lqq~ 1143 (1463)
..++-.+..+|+.-
T Consensus 488 V~s~~~v~~ll~~g 501 (670)
T KOG0239|consen 488 VGSSEEVDILLEIG 501 (670)
T ss_pred cCCHHHHHHHHHHh
Confidence 45555555565543
No 370
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=82.03 E-value=1.1e+02 Score=35.84 Aligned_cols=15 Identities=47% Similarity=0.567 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 000489 867 ISKLQKLLESLNLEL 881 (1463)
Q Consensus 867 ~~~Lq~~le~l~~eL 881 (1463)
+.+|++++..++.+.
T Consensus 137 V~kL~k~i~~Le~e~ 151 (310)
T PF09755_consen 137 VNKLQKKIERLEKEK 151 (310)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555443
No 371
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=82.02 E-value=1.4 Score=56.65 Aligned_cols=44 Identities=32% Similarity=0.450 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 129 PHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 129 PHi~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
|=|.++-.++|.. +.++.-.|+|+|.||||||+.++.+...|-.
T Consensus 375 peV~~iL~~~~~~--r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 375 PEVVAELRRTYPP--RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHHhcc--ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 3455555555533 3455669999999999999999999998865
No 372
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=81.80 E-value=2.4 Score=49.24 Aligned_cols=47 Identities=23% Similarity=0.350 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHh---------cCCCeEEEEcCCCCCCchHHHHHHHHHHHHhh
Q 000489 130 HVFAVADASYRAMIS---------EHQSQSILVSGESGAGKTETTKLIMQYLTFVG 176 (1463)
Q Consensus 130 Hi~avA~~Ay~~m~~---------~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 176 (1463)
.+..+..++++.++. .++...|++.|.+|+|||+++-.+..+++..+
T Consensus 45 ~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 45 LLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred HHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 355666666666542 23467999999999999999988888887654
No 373
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=81.80 E-value=29 Score=32.01 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHH
Q 000489 919 MAEIRKENAVLKSSLDSLEKKNSTLELELIKA 950 (1463)
Q Consensus 919 ~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el 950 (1463)
++.....+..|+.++++++++...+..+...+
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e~~~~ 44 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNA 44 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555555555444444433
No 374
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=81.80 E-value=1.2 Score=47.30 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.2
Q ss_pred EEEcCCCCCCchHHHHHHHHHHHHhh
Q 000489 151 ILVSGESGAGKTETTKLIMQYLTFVG 176 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla~~~ 176 (1463)
|.|.|.+|||||+.+..++..|...|
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999997653
No 375
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=81.78 E-value=1 Score=46.45 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.3
Q ss_pred EEEcCCCCCCchHHHHHHHHHH
Q 000489 151 ILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yl 172 (1463)
|++.|++|.|||+.++.+.+-+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999888777
No 376
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=81.60 E-value=1.1 Score=51.58 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCCCchHHHHHHHHH
Q 000489 148 SQSILVSGESGAGKTETTKLIMQY 171 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~y 171 (1463)
...|+|+|+||+||||+|=-+++-
T Consensus 145 GvGVLItG~SG~GKSElALeLi~r 168 (308)
T COG1493 145 GVGVLITGPSGAGKSELALELIKR 168 (308)
T ss_pred eeEEEEECCCCCCHhHHHHHHHHh
Confidence 467999999999999997655543
No 377
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=81.59 E-value=0.97 Score=47.59 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCCCchHHHHHHHHH
Q 000489 147 QSQSILVSGESGAGKTETTKLIMQY 171 (1463)
Q Consensus 147 ~~QsIiisGeSGaGKTe~~k~~~~y 171 (1463)
..-+|.|+|.||+||++..|.+..-
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhc
Confidence 4568999999999999987776443
No 378
>PRK06893 DNA replication initiation factor; Validated
Probab=81.56 E-value=2.1 Score=48.42 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 136 DASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 136 ~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
..+.+.+ ....+-++++.|+||+|||..+..+-+.+..-
T Consensus 28 ~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 28 DSLRKNF-IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred HHHHHHh-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3333343 34566789999999999999999998887653
No 379
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=81.53 E-value=3.5 Score=50.91 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 131 VFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 131 i~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
++...-+|-..+..-++.|-+.|.|.||+|||+..+.++.+.
T Consensus 158 ~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~ 199 (455)
T PRK07960 158 VLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYT 199 (455)
T ss_pred chhccceeeeecccccCCcEEEEECCCCCCccHHHHHHhCCC
Confidence 344455555666677889999999999999999988887654
No 380
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=81.48 E-value=1.1 Score=47.48 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCCCchHHHHHHHHH
Q 000489 147 QSQSILVSGESGAGKTETTKLIMQY 171 (1463)
Q Consensus 147 ~~QsIiisGeSGaGKTe~~k~~~~y 171 (1463)
+++++++.|.||+|||+....++..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4589999999999999987766544
No 381
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=81.48 E-value=1.5 Score=47.65 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.7
Q ss_pred EEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 151 ILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
||++|-.|||||+-+|.+-+-|..-
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHh
Confidence 8999999999999999999988653
No 382
>PRK08727 hypothetical protein; Validated
Probab=81.45 E-value=2 Score=48.77 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=25.7
Q ss_pred cCCCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 145 EHQSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 145 ~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
....+.|+|.|+||+|||..+..+...+...
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3455789999999999999999988887654
No 383
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=81.42 E-value=1.5 Score=38.79 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=16.6
Q ss_pred EEEEcCCCCCCchHHHHHHH
Q 000489 150 SILVSGESGAGKTETTKLIM 169 (1463)
Q Consensus 150 sIiisGeSGaGKTe~~k~~~ 169 (1463)
..+|+|++|||||+..-.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998765553
No 384
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=81.42 E-value=1.3 Score=51.77 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhc--------CCCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 131 VFAVADASYRAMISE--------HQSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 131 i~avA~~Ay~~m~~~--------~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
++....++...++.. .+...|+|.|.+|+|||+++..+..|++.-
T Consensus 169 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 169 AWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred HHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 455555566565531 245689999999999999999999999765
No 385
>PRK10646 ADP-binding protein; Provisional
Probab=81.40 E-value=2.2 Score=44.94 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 148 SQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
.-.|++.|+-|||||+-+|.+.+.|
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4478999999999999999998888
No 386
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=81.32 E-value=1.5e+02 Score=37.39 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000489 828 AGALRLAKNKLERQLEDLTWRVQLEK 853 (1463)
Q Consensus 828 ~~~l~~~~~~Le~ki~el~~rl~~ek 853 (1463)
++++.+....||--+++-..++.+.+
T Consensus 134 VeaQgEKIrDLE~cie~kr~kLnatE 159 (861)
T KOG1899|consen 134 VEAQGEKIRDLETCIEEKRNKLNATE 159 (861)
T ss_pred HHHhhhhHHHHHHHHHHHHhhhchHH
Confidence 44444555555555555555555433
No 387
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=81.30 E-value=1.5e+02 Score=39.47 Aligned_cols=11 Identities=36% Similarity=0.398 Sum_probs=5.6
Q ss_pred HHhhhhhhHHh
Q 000489 447 FCINFANEKLQ 457 (1463)
Q Consensus 447 lciNyaNE~Lq 457 (1463)
+.|-++|=+|+
T Consensus 300 ~via~~~G~l~ 310 (717)
T PF10168_consen 300 LVIATSNGKLY 310 (717)
T ss_pred EEEEecCCeEE
Confidence 44455555554
No 388
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=81.23 E-value=1.8e+02 Score=37.76 Aligned_cols=6 Identities=50% Similarity=1.387 Sum_probs=3.0
Q ss_pred HHHHHH
Q 000489 1319 ELEKWI 1324 (1463)
Q Consensus 1319 ~Le~W~ 1324 (1463)
.+|+|+
T Consensus 954 tIEdwi 959 (1265)
T KOG0976|consen 954 TIEDWI 959 (1265)
T ss_pred ccccce
Confidence 455554
No 389
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=81.21 E-value=1.1 Score=48.84 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=22.1
Q ss_pred eEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 149 QSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 149 QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
.-|||+|.||||||+.++.+++-+-
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcc
Confidence 4689999999999999999988764
No 390
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=81.07 E-value=1e+02 Score=34.68 Aligned_cols=80 Identities=15% Similarity=0.232 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHh-----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000489 917 VAMAEIRKENAVLKSS-----LDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHV 991 (1463)
Q Consensus 917 ~~~~~L~~e~~~Lk~e-----~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~ 991 (1463)
.+..-|..||+.|-.+ +.+|+.++.-.+..-++++..-+++-.-+.++.+....++..+.-|+++++..++++..
T Consensus 217 AKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~ 296 (330)
T KOG2991|consen 217 AKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQR 296 (330)
T ss_pred HHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH
Confidence 3444455555544333 22233333322222333333333333444555555556666666667777777777777
Q ss_pred HHHhh
Q 000489 992 LRQKA 996 (1463)
Q Consensus 992 Lkqq~ 996 (1463)
|++..
T Consensus 297 l~k~~ 301 (330)
T KOG2991|consen 297 LKKGL 301 (330)
T ss_pred HHHHH
Confidence 76543
No 391
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=81.04 E-value=1.7e+02 Score=37.30 Aligned_cols=81 Identities=23% Similarity=0.316 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000489 918 AMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTI----EKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLR 993 (1463)
Q Consensus 918 ~~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~----~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lk 993 (1463)
+...|..+...+..+++.+++++..++..+.....+...+. .+......++.-...+++.....+..++.++..|+
T Consensus 183 ~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~ 262 (629)
T KOG0963|consen 183 REAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLR 262 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555443333322222221 12233334455556666666667777777777777
Q ss_pred Hhhhc
Q 000489 994 QKALS 998 (1463)
Q Consensus 994 qq~~~ 998 (1463)
+++..
T Consensus 263 ~ql~~ 267 (629)
T KOG0963|consen 263 EQLAK 267 (629)
T ss_pred HHHHh
Confidence 76544
No 392
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.03 E-value=34 Score=30.48 Aligned_cols=16 Identities=31% Similarity=0.626 Sum_probs=6.1
Q ss_pred HHHhHHHHHHHhHHHH
Q 000489 929 LKSSLDSLEKKNSTLE 944 (1463)
Q Consensus 929 Lk~e~~~l~~~~~ele 944 (1463)
|+.++++++++...+.
T Consensus 23 LQmEieELKEknn~l~ 38 (79)
T COG3074 23 LQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHhhHhH
Confidence 3333333333333333
No 393
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=80.99 E-value=55 Score=32.97 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000489 956 NTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHV 991 (1463)
Q Consensus 956 ~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~ 991 (1463)
++.++++.++-++..|+.+-.++++++.+|+.++..
T Consensus 74 eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 74 ELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555666666666666666666666665554
No 394
>PRK14528 adenylate kinase; Provisional
Probab=80.98 E-value=1.2 Score=48.60 Aligned_cols=24 Identities=33% Similarity=0.617 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCCchHHHHHHHHHH
Q 000489 149 QSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 149 QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
+-|+|.|.+|||||+.++.+-+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999997776
No 395
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=80.96 E-value=1.4e+02 Score=36.29 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000489 802 IIAIQCRWRQKLAKRELR 819 (1463)
Q Consensus 802 ~v~iQ~~~R~~~arr~~~ 819 (1463)
.-.-|-.+|...+++-++
T Consensus 179 ~kdSQlkvrlqe~~~ll~ 196 (554)
T KOG4677|consen 179 PKDSQLKVRLQEVRRLLK 196 (554)
T ss_pred cchhhHHHHHHHHHHHHH
Confidence 344577776665554443
No 396
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.93 E-value=2.1 Score=53.77 Aligned_cols=53 Identities=23% Similarity=0.463 Sum_probs=37.5
Q ss_pred HHhhCCCCCCC--ChhHHHHHHHHHHHHHhc-CCCeEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 117 EQYKGAPFGEL--SPHVFAVADASYRAMISE-HQSQSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 117 ~~y~~~~~~~l--~PHi~avA~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
++|+...+.++ .+|+ ....+.+... +-.+++|++|+.|.|||+.++.+.+.+-
T Consensus 6 ~kyRP~~~~divGq~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred HHHCCCCHHHccCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45666655554 4565 3344455544 4567899999999999999999988764
No 397
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=80.88 E-value=22 Score=32.57 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHH
Q 000489 918 AMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKEN 954 (1463)
Q Consensus 918 ~~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~ 954 (1463)
+++.+-..+..|+.++++++++...+..+...++.++
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en 48 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELKEENEELKEEN 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444444444444444444444444444333333333
No 398
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.87 E-value=1.1 Score=50.30 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
...+.+.|.|+||||||+..|.++..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988876443
No 399
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=80.86 E-value=1.9 Score=51.16 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=34.0
Q ss_pred CCCChhHHHHHHHHHHHH----HhcCCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 125 GELSPHVFAVADASYRAM----ISEHQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 125 ~~l~PHi~avA~~Ay~~m----~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
.++||---+.+......| ..-.....|++.|-+|||||+.++.+-..|
T Consensus 106 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 106 EQASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 356775444444443333 344578899999999999999999987665
No 400
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=80.84 E-value=1.1 Score=50.70 Aligned_cols=25 Identities=36% Similarity=0.666 Sum_probs=22.7
Q ss_pred EEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 150 SILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 150 sIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
.|+|-|.||||||+..+.++.++..
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcc
Confidence 5899999999999999999998854
No 401
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=80.76 E-value=1.1 Score=53.55 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
...+.+.|.||||||||+..+.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 467899999999999999999987665
No 402
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=80.76 E-value=1.1 Score=53.63 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
.+.+.+.|-|+||||||+..+.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 478899999999999999999887655
No 403
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=80.68 E-value=2.1 Score=52.77 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=24.1
Q ss_pred HHhcCCCeEEEEcCCCCCCchHHHHHHHHH
Q 000489 142 MISEHQSQSILVSGESGAGKTETTKLIMQY 171 (1463)
Q Consensus 142 m~~~~~~QsIiisGeSGaGKTe~~k~~~~y 171 (1463)
+..-++.|.+.|.|+||+|||+..+.+.++
T Consensus 159 L~~I~~Gqri~I~G~SGsGKTTLL~~Ia~l 188 (450)
T PRK06002 159 FTPLCAGQRIGIFAGSGVGKSTLLAMLARA 188 (450)
T ss_pred eceecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 334567999999999999999998766544
No 404
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=80.65 E-value=2.2e+02 Score=38.32 Aligned_cols=22 Identities=9% Similarity=0.101 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 000489 965 EQKCSSLQQNMQSLEEKLSHLE 986 (1463)
Q Consensus 965 e~~i~~L~~e~~~Lee~l~~Le 986 (1463)
+.++.+|+.+.+..++.+..+-
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll 396 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYL 396 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444443
No 405
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=80.60 E-value=2.3 Score=47.87 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcC--CCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 135 ADASYRAMISEH--QSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 135 A~~Ay~~m~~~~--~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
|-.|-..+.... ....++|.|+||+|||.....+.+++...
T Consensus 19 a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~ 61 (219)
T PF00308_consen 19 AYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ 61 (219)
T ss_dssp HHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 344445555443 23579999999999999888888777653
No 406
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=80.59 E-value=1.9 Score=46.95 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
+..-.|+|+|.||||||+.++.+...|..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44568999999999999999999998853
No 407
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=80.54 E-value=1.5 Score=52.04 Aligned_cols=32 Identities=31% Similarity=0.371 Sum_probs=27.7
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHHHHhhc
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYLTFVGG 177 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~ 177 (1463)
++.+.|.+.|.+|||||+++..+..+++..++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~ 143 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGK 143 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCC
Confidence 45789999999999999999999999986543
No 408
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.53 E-value=2 Score=54.82 Aligned_cols=56 Identities=21% Similarity=0.431 Sum_probs=39.1
Q ss_pred HHHhhCCCCCCCC--hhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 116 MEQYKGAPFGELS--PHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 116 ~~~y~~~~~~~l~--PHi~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
.++|+-..+.++- +|+-..-..++. ..+-.+++|++|++|.|||+.++.+.+.|-.
T Consensus 7 ~~k~rP~~f~divGq~~v~~~L~~~i~---~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVRALTNALE---QQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHH---cCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3566665555543 555543333332 3456789999999999999999999998853
No 409
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=80.50 E-value=49 Score=40.01 Aligned_cols=7 Identities=29% Similarity=0.202 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 000489 833 LAKNKLE 839 (1463)
Q Consensus 833 ~~~~~Le 839 (1463)
.||..++
T Consensus 217 DWR~hle 223 (359)
T PF10498_consen 217 DWRSHLE 223 (359)
T ss_pred hHHHHHH
Confidence 3444443
No 410
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=80.49 E-value=1.2 Score=49.71 Aligned_cols=27 Identities=37% Similarity=0.581 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
...+.+.|.|+||||||+..|.++..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988886543
No 411
>PRK00698 tmk thymidylate kinase; Validated
Probab=80.49 E-value=1.6 Score=48.20 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=24.3
Q ss_pred CeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 148 SQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
+-.|+|.|.+|||||+.++.+-++|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4479999999999999999999988543
No 412
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=80.48 E-value=1.2 Score=48.37 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=21.0
Q ss_pred EEEcCCCCCCchHHHHHHHHHHH
Q 000489 151 ILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla 173 (1463)
|+|.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999988774
No 413
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=80.44 E-value=1.2 Score=49.81 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
...+.+.|.|+||||||+..|.++-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999888876543
No 414
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=80.44 E-value=1.2 Score=49.78 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
.+.+.+.|.|+||||||+..|.++..+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457889999999999999999887654
No 415
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=80.39 E-value=0.72 Score=59.06 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=26.6
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
++.+.|.|.|+||||||+..|.++.+..--
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~ 388 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDPL 388 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 578999999999999999999999887543
No 416
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=80.31 E-value=1.1 Score=55.89 Aligned_cols=29 Identities=24% Similarity=0.491 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
.+-.+.=|-||||||||+.+|.++..+.-
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34567778899999999999999887754
No 417
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=80.27 E-value=1.2 Score=48.58 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQ 170 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~ 170 (1463)
...+.+.|.|+||||||+..|.++.
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999998887753
No 418
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=80.22 E-value=1.5e+02 Score=41.25 Aligned_cols=180 Identities=12% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000489 814 AKRELRRLKQVANEAGALRLAKNKLERQLEDLTWRVQLEKKLRVSTEEAKSVEISKLQKLLESLNLELDAAKLATINECN 893 (1463)
Q Consensus 814 arr~~~~lk~~a~~~~~l~~~~~~Le~ki~el~~rl~~ek~l~~~~~eak~~E~~~Lq~~le~l~~eL~~~~~~~~~e~~ 893 (1463)
+-.-+.+.+........++..-....++..++++++...+.-. ..-.+.....+|+.++.....++.+.+.....+.+
T Consensus 53 tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~--~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~ 130 (1109)
T PRK10929 53 ALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEP--RSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQD 130 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc--ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000489 894 KNAMLQNQLELSLKEKSALERELVAMAEIRKE------------NAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKL 961 (1463)
Q Consensus 894 ~~~~~~~ele~~~~e~~~l~e~~~~~~~L~~e------------~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el 961 (1463)
........+...-....+..+...++....+. ...|+.+...++.+++.++.++.......+-...+.
T Consensus 131 ~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~ 210 (1109)
T PRK10929 131 RAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRS 210 (1109)
T ss_pred hhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 000489 962 REVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQK 995 (1463)
Q Consensus 962 ~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lkqq 995 (1463)
+....+++.++.+++.+++.+.....+.....-+
T Consensus 211 dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~ 244 (1109)
T PRK10929 211 ELAKKRSQQLDAYLQALRNQLNSQRQREAERALE 244 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 419
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=80.17 E-value=1.4 Score=51.04 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=26.5
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHHHHhh
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYLTFVG 176 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 176 (1463)
+..-.|++.|++|+|||+.++.+-+.|...+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3456899999999999999999999886553
No 420
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=80.17 E-value=0.9 Score=59.52 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=26.4
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHHHHhh
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYLTFVG 176 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 176 (1463)
...|.|.|.|+||||||+.+|+++.+..--.
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~ 527 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ 527 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 3578999999999999999999988775443
No 421
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=80.16 E-value=1.2 Score=53.42 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
.+.+.+.|-||||||||+..|.|+..+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 568899999999999999999987655
No 422
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=80.14 E-value=1.1 Score=45.83 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=21.4
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
...+.+.|.|++|||||+..+.+...+
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEccCCCccccceeeecccc
Confidence 356889999999999999877664443
No 423
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=80.09 E-value=1.6 Score=46.44 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=24.5
Q ss_pred eEEEEcCCCCCCchHHHHHHHHHHHHhh
Q 000489 149 QSILVSGESGAGKTETTKLIMQYLTFVG 176 (1463)
Q Consensus 149 QsIiisGeSGaGKTe~~k~~~~yla~~~ 176 (1463)
..|.|.|.||||||+.++.++..|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3588999999999999999999997654
No 424
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.09 E-value=2.1 Score=54.17 Aligned_cols=55 Identities=18% Similarity=0.368 Sum_probs=41.0
Q ss_pred HHHhhCCCCCCCC--hhHHHHHHHHHHHHH-hcCCCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 116 MEQYKGAPFGELS--PHVFAVADASYRAMI-SEHQSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 116 ~~~y~~~~~~~l~--PHi~avA~~Ay~~m~-~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
.++|+-+.+.++- +||-. +.+++. ..+-+++++++|..|.|||++++.+-+.|-.
T Consensus 7 ~~kyRP~~f~divGq~~v~~----~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVR----ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHH----HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4677776666653 55544 444444 4567899999999999999999999999854
No 425
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=80.07 E-value=71 Score=38.42 Aligned_cols=9 Identities=22% Similarity=0.468 Sum_probs=3.3
Q ss_pred hhhhHHHHH
Q 000489 1129 WLSNASALL 1137 (1463)
Q Consensus 1129 WLSN~~~Ll 1137 (1463)
|=-+..+++
T Consensus 246 Wnvd~~r~~ 254 (459)
T KOG0288|consen 246 WNVDSLRLR 254 (459)
T ss_pred eeccchhhh
Confidence 333333333
No 426
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=80.01 E-value=1.2 Score=50.96 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=22.3
Q ss_pred EEEcCCCCCCchHHHHHHHHHHHH
Q 000489 151 ILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
|+++|-+|||||+.++.+-++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999864
No 427
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=80.01 E-value=3.1 Score=51.27 Aligned_cols=42 Identities=12% Similarity=0.210 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 132 FAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 132 ~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
+.+.-+|-..|..-.+.|-+.|.|.||+|||+..+.++++..
T Consensus 142 l~TGir~ID~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~ 183 (442)
T PRK08927 142 LDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNAD 183 (442)
T ss_pred cccceEEEeeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 444445555566668899999999999999999998888764
No 428
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=80.01 E-value=1.3 Score=49.27 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
...+.+.|.|+||||||+..+.++-.+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 457889999999999999988886544
No 429
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=80.00 E-value=0.99 Score=53.55 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 147 QSQSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 147 ~~QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
....|+|+|.+|||||+..+.++.++.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 346999999999999999998887763
No 430
>PRK13768 GTPase; Provisional
Probab=80.00 E-value=1.4 Score=50.70 Aligned_cols=27 Identities=33% Similarity=0.538 Sum_probs=24.4
Q ss_pred EEEEcCCCCCCchHHHHHHHHHHHHhh
Q 000489 150 SILVSGESGAGKTETTKLIMQYLTFVG 176 (1463)
Q Consensus 150 sIiisGeSGaGKTe~~k~~~~yla~~~ 176 (1463)
.|+|+|.+|+|||+.+..+..+|+..|
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
Confidence 589999999999999999999998653
No 431
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=79.99 E-value=1.3 Score=47.91 Aligned_cols=27 Identities=33% Similarity=0.327 Sum_probs=22.2
Q ss_pred EEEEcCCCCCCchHHHHHHHHHHHHhh
Q 000489 150 SILVSGESGAGKTETTKLIMQYLTFVG 176 (1463)
Q Consensus 150 sIiisGeSGaGKTe~~k~~~~yla~~~ 176 (1463)
+++|+|++|+|||..+-.++...+.-+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g 27 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG 27 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 489999999999998888777776443
No 432
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=79.88 E-value=1.2 Score=53.48 Aligned_cols=27 Identities=33% Similarity=0.572 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
.+.+.+.|-||||||||+..+.|+..+
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 467899999999999999999887655
No 433
>PRK08116 hypothetical protein; Validated
Probab=79.84 E-value=2.8 Score=48.63 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHHh-cCCCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 129 PHVFAVADASYRAMIS-EHQSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 129 PHi~avA~~Ay~~m~~-~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
.+.|+.|..--..... ...+..+++.|++|+|||..+..|.++|..-
T Consensus 94 ~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 94 EKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred HHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3455555544333322 2345679999999999999999999999754
No 434
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.83 E-value=1.3 Score=49.33 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999988876544
No 435
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=79.82 E-value=1.5e+02 Score=35.75 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=5.9
Q ss_pred HHHHhHHHHHHHhHH
Q 000489 928 VLKSSLDSLEKKNST 942 (1463)
Q Consensus 928 ~Lk~e~~~l~~~~~e 942 (1463)
.|+.+++.++..+..
T Consensus 257 ~l~~EveRlrt~l~~ 271 (552)
T KOG2129|consen 257 KLQAEVERLRTYLSR 271 (552)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444433333
No 436
>PRK05922 type III secretion system ATPase; Validated
Probab=79.81 E-value=2.3 Score=52.28 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 132 FAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 132 ~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
+.+.-+|-..+..-++.|-|.|.|.+|+|||+..+.+.++.
T Consensus 141 l~TGIr~ID~ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~ 181 (434)
T PRK05922 141 FPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGS 181 (434)
T ss_pred cCCCceeecceEEEcCCcEEEEECCCCCChHHHHHHHhccC
Confidence 34444455556677899999999999999999988887664
No 437
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=79.78 E-value=1.6 Score=52.70 Aligned_cols=41 Identities=22% Similarity=0.528 Sum_probs=32.1
Q ss_pred CCeEEEEcCCCCCCchHHHHHHHHHHHHhhcccCCCCCcHH
Q 000489 147 QSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVE 187 (1463)
Q Consensus 147 ~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve 187 (1463)
..|+|-+-|+|||||++..+++.+++-.-+|+-.-++..|.
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIr 603 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIR 603 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHH
Confidence 46999999999999999999999999876654333444443
No 438
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.74 E-value=1.9 Score=54.52 Aligned_cols=56 Identities=30% Similarity=0.406 Sum_probs=37.9
Q ss_pred HHhhCCCCCCC--ChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 117 EQYKGAPFGEL--SPHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 117 ~~y~~~~~~~l--~PHi~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
++|+-..+.++ ..|+.+.-..+.. ..+-.++++++|++|+|||+.++.+.+.|-..
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~---~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALR---QGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 35655554444 3455443333322 34567899999999999999999999988643
No 439
>PLN02796 D-glycerate 3-kinase
Probab=79.74 E-value=1.2 Score=52.83 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.6
Q ss_pred EEEEcCCCCCCchHHHHHHHHHHH
Q 000489 150 SILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 150 sIiisGeSGaGKTe~~k~~~~yla 173 (1463)
-|-|+|.||||||+.++.+...|.
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 378899999999999998877664
No 440
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=79.64 E-value=1.9e+02 Score=36.85 Aligned_cols=15 Identities=20% Similarity=0.078 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 000489 777 KAATVIQACWRMCKF 791 (1463)
Q Consensus 777 ~aa~~IQ~~~R~~~~ 791 (1463)
.|+.+..+....|+.
T Consensus 135 ~Aa~i~n~l~~~yi~ 149 (498)
T TIGR03007 135 LAKDVVQTLLTIFVE 149 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555444443
No 441
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=79.60 E-value=1.7 Score=41.00 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=23.0
Q ss_pred EEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 151 ILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
|+++|-.|+|||+.+..+...|+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~ 26 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR 26 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7889999999999999999999874
No 442
>PTZ00121 MAEBL; Provisional
Probab=79.57 E-value=2.8e+02 Score=38.87 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=25.1
Q ss_pred CccccCCCCCchhHHHHHHHHhhcCCcccccCc
Q 000489 64 DDMTKLTYLNEPGVLYNLERRYALNDIYTYTGS 96 (1463)
Q Consensus 64 ~Dl~~L~~l~e~~vl~~L~~R~~~~~iYT~~G~ 96 (1463)
=|||.=..+++..|+.....|......|||-|.
T Consensus 162 ydmc~~kfy~~~~i~~r~~k~~~~~~ky~~fg~ 194 (2084)
T PTZ00121 162 YDMCFEKFYNNMEISDRIKKRGKQNRKYIHFGS 194 (2084)
T ss_pred hhHHHHHHhhccchhhhhhhcccccccceeeec
Confidence 388877778877777777777777788998773
No 443
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.57 E-value=2.3 Score=54.97 Aligned_cols=55 Identities=22% Similarity=0.444 Sum_probs=38.9
Q ss_pred HHhhCCCCCCCC--hhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 117 EQYKGAPFGELS--PHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 117 ~~y~~~~~~~l~--PHi~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
++|+-..+.++- .|+...-..++ ...+-.+++|++|++|.|||+.++.+.++|-.
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i---~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAI---AEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHH---HhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 467666666654 44444333333 23456889999999999999999999999853
No 444
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=79.57 E-value=1.4 Score=50.71 Aligned_cols=77 Identities=29% Similarity=0.416 Sum_probs=49.5
Q ss_pred hcCCcccccCceeeeeCCCCCCCCCCCHHHHHHhhCC--CC--CCCChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCCc
Q 000489 86 ALNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGA--PF--GELSPHVFAVADASYRAMISEHQSQSILVSGESGAGK 161 (1463)
Q Consensus 86 ~~~~iYT~~G~iLiaiNP~~~l~~ly~~~~~~~y~~~--~~--~~l~PHi~avA~~Ay~~m~~~~~~QsIiisGeSGaGK 161 (1463)
.-|-=|++.|..=+-||-|+..- -|+-- ++.-... .+ -.+||-+..++ ...+--|+|+|..||||
T Consensus 70 E~Dfs~~~~~~~RfRvN~f~qr~-~~a~v-lR~Ip~~i~~~e~LglP~i~~~~~---------~~~~GLILVTGpTGSGK 138 (353)
T COG2805 70 ELDFSYTLPGVARFRVNAFKQRG-GYALV-LRLIPSKIPTLEELGLPPIVRELA---------ESPRGLILVTGPTGSGK 138 (353)
T ss_pred ceeEEEecCCcceEEeehhhhcC-CcEEE-EeccCccCCCHHHcCCCHHHHHHH---------hCCCceEEEeCCCCCcH
Confidence 34667899898888889887653 22210 0000000 01 13566555543 33566799999999999
Q ss_pred hHHHHHHHHHHH
Q 000489 162 TETTKLIMQYLT 173 (1463)
Q Consensus 162 Te~~k~~~~yla 173 (1463)
|+|.--++.|+-
T Consensus 139 STTlAamId~iN 150 (353)
T COG2805 139 STTLAAMIDYIN 150 (353)
T ss_pred HHHHHHHHHHHh
Confidence 999999988884
No 445
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=79.55 E-value=1.4 Score=49.73 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999988766
No 446
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=79.53 E-value=1.3 Score=51.64 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.3
Q ss_pred EEEcCCCCCCchHHHHHHHHHH
Q 000489 151 ILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yl 172 (1463)
|.|+|.||||||+.++.+...|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999998887666
No 447
>PRK04195 replication factor C large subunit; Provisional
Probab=79.53 E-value=1.9 Score=54.62 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 147 QSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 147 ~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
....++|+|++|.|||+.++.+.+.+
T Consensus 38 ~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 38 PKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 36799999999999999999997766
No 448
>PRK03839 putative kinase; Provisional
Probab=79.50 E-value=1.4 Score=47.83 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=20.6
Q ss_pred EEEEcCCCCCCchHHHHHHHHHH
Q 000489 150 SILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 150 sIiisGeSGaGKTe~~k~~~~yl 172 (1463)
-|+|.|-+|||||+.++.+-+-+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999987776
No 449
>PRK14531 adenylate kinase; Provisional
Probab=79.49 E-value=1.5 Score=47.76 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.3
Q ss_pred eEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 149 QSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 149 QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
|-|+|.|.+|||||+.++.+-+.+-
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999988763
No 450
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=79.30 E-value=2.1 Score=56.41 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 137 ASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 137 ~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
...+.+...+...++++.|++|.|||+.++.+-+++
T Consensus 41 ~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 466777777888899999999999999999998765
No 451
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=79.29 E-value=1.4 Score=49.35 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
...+.+.|.|+||||||+..|.++..+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 467899999999999999988886544
No 452
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=79.23 E-value=1.2e+02 Score=34.24 Aligned_cols=75 Identities=13% Similarity=0.244 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHh
Q 000489 916 LVAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQK-----------CSSLQQNMQSLEEKLSH 984 (1463)
Q Consensus 916 ~~~~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~-----------i~~L~~e~~~Lee~l~~ 984 (1463)
......+..+...++..++.+...+.+++.++.+.+.....+......+... .......++++++++..
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~ 177 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDE 177 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666555444443333222221 12333445566666655
Q ss_pred HHHHHH
Q 000489 985 LEDENH 990 (1463)
Q Consensus 985 Le~E~~ 990 (1463)
++.+..
T Consensus 178 ~ea~ae 183 (219)
T TIGR02977 178 LEAQAE 183 (219)
T ss_pred HHHHHH
Confidence 555433
No 453
>PRK00023 cmk cytidylate kinase; Provisional
Probab=79.22 E-value=1.4 Score=49.78 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 148 SQSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
+-.|.|+|.+|||||+.++.+.+.|-
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998883
No 454
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=79.20 E-value=1.4 Score=48.83 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
...+.+.|.|++|||||+..|.++-.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 357889999999999999888876433
No 455
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=79.15 E-value=1.3 Score=52.92 Aligned_cols=28 Identities=32% Similarity=0.531 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
.+.+.+.|-||||||||+..+.|+..+.
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4678899999999999999999987653
No 456
>PRK06820 type III secretion system ATPase; Validated
Probab=79.10 E-value=3.6 Score=50.85 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 134 VADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 134 vA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
..-.|...|..-++.|.+.|.|.||+|||+..+.+..+.
T Consensus 149 TGi~aID~l~~i~~Gqri~I~G~sG~GKStLl~~I~~~~ 187 (440)
T PRK06820 149 TGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLGMLCADS 187 (440)
T ss_pred CCCceecceEEecCCCEEEEECCCCCChHHHHHHHhccC
Confidence 444566667777899999999999999999988776543
No 457
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.01 E-value=1.5 Score=47.52 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
...+.+.|.|++|||||+..|.++-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999888876543
No 458
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=78.98 E-value=1.7e+02 Score=35.98 Aligned_cols=10 Identities=30% Similarity=0.461 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 000489 970 SLQQNMQSLE 979 (1463)
Q Consensus 970 ~L~~e~~~Le 979 (1463)
.|..++.+++
T Consensus 235 ~L~~~Ias~e 244 (420)
T COG4942 235 RLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 459
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.97 E-value=1.4 Score=50.08 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
...+.+.|.|+||||||+..|.++-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999888876543
No 460
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=78.94 E-value=1.4 Score=47.41 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQ 170 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~ 170 (1463)
..+..|+|.||+|+||+..|+.|-+
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4568999999999999999998855
No 461
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=78.85 E-value=2.5 Score=51.04 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=32.2
Q ss_pred HHHHHHHHHhc-CCCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 135 ADASYRAMISE-HQSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 135 A~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
|...+..+... +-+++++|+|+.|.|||+.++.+.++|-.
T Consensus 31 a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 31 AEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 44555555554 45899999999999999999999998865
No 462
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=78.84 E-value=2.9 Score=52.30 Aligned_cols=57 Identities=23% Similarity=0.359 Sum_probs=40.8
Q ss_pred HHhhCCCCCCCChhHHHHHHHHHHHHHhc-CCCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 117 EQYKGAPFGELSPHVFAVADASYRAMISE-HQSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 117 ~~y~~~~~~~l~PHi~avA~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
++|+-..+.++--|--.++ ..+.+... +-.+++|+.|++|.|||+.++.+.++|...
T Consensus 9 ~kyRP~~~~diiGq~~~v~--~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVA--VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred HHhCCCCHHHhcCcHHHHH--HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 4676666666655544443 34444444 457999999999999999999999999643
No 463
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.83 E-value=3.2 Score=50.52 Aligned_cols=57 Identities=19% Similarity=0.412 Sum_probs=43.5
Q ss_pred HHHhhCCCCCCCChhHHHHHHHHHHHHHhc-CCCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 116 MEQYKGAPFGELSPHVFAVADASYRAMISE-HQSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 116 ~~~y~~~~~~~l~PHi~avA~~Ay~~m~~~-~~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
.++|+...+.++--|-.++ ...+..... .-+..++++|+.|.|||+.++.+.+.+..
T Consensus 8 ~~k~rP~~~~~iig~~~~~--~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSHIT--NTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HHHHCCCcHHhcCCcHHHH--HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5678877777777665544 445555544 45789999999999999999999888864
No 464
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=78.80 E-value=1.3 Score=48.15 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.9
Q ss_pred EEEEcCCCCCCchHHHHHHHHHH
Q 000489 150 SILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 150 sIiisGeSGaGKTe~~k~~~~yl 172 (1463)
-|||+|.||||||+.++.+++..
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998875
No 465
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.77 E-value=2.3 Score=54.59 Aligned_cols=55 Identities=25% Similarity=0.425 Sum_probs=40.4
Q ss_pred HHHhhCCCCCCC--ChhHHHHHHHHHHHHHhcC-CCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 116 MEQYKGAPFGEL--SPHVFAVADASYRAMISEH-QSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 116 ~~~y~~~~~~~l--~PHi~avA~~Ay~~m~~~~-~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
.++|+-..+.++ .+|+-++-. .+...+ -.+++|++|+.|.|||++++.+-++|-.
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~L~----~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAILS----RAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHH----HHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 456776666554 467744434 434444 4899999999999999999999999964
No 466
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=78.76 E-value=2.8 Score=48.55 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=31.4
Q ss_pred ChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 128 SPHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 128 ~PHi~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
.|++=.+-+.+.+.+. .+..|++.|++|+|||+.++.+-+.+
T Consensus 4 t~~~~~l~~~~l~~l~---~g~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 4 TDAVKRVTSRALRYLK---SGYPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred CHHHHHHHHHHHHHHh---cCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3555566666665554 35689999999999999999876543
No 467
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=78.55 E-value=1.4 Score=49.15 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQY 171 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~y 171 (1463)
...+.+.|.|+||||||+..|.+.-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 46789999999999999998887543
No 468
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=78.50 E-value=1.4 Score=51.97 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.9
Q ss_pred eEEEEcCCCCCCchHHHHHHHHHH
Q 000489 149 QSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 149 QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
+-||++|.+|||||+.++.+.+.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 579999999999999999998876
No 469
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=78.46 E-value=1.3 Score=57.56 Aligned_cols=28 Identities=21% Similarity=0.554 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
.+.|.+.|.|+||||||+..|.++..+.
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4689999999999999999999988764
No 470
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=78.40 E-value=1.5 Score=51.39 Aligned_cols=24 Identities=38% Similarity=0.652 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCCchHHHHHHHHH
Q 000489 148 SQSILVSGESGAGKTETTKLIMQY 171 (1463)
Q Consensus 148 ~QsIiisGeSGaGKTe~~k~~~~y 171 (1463)
.-.|+|.|+||+||||+|=-+++.
T Consensus 146 G~GvLi~G~SG~GKSelALeLi~r 169 (308)
T PRK05428 146 GIGVLITGESGIGKSETALELIKR 169 (308)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 468999999999999998877765
No 471
>PF13479 AAA_24: AAA domain
Probab=78.34 E-value=1.3 Score=49.52 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=19.2
Q ss_pred CCCeEEEEcCCCCCCchHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLI 168 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~ 168 (1463)
+++..|+|-|+||+|||+.++.+
T Consensus 1 ~~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 1 KKPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CCceEEEEECCCCCCHHHHHHhC
Confidence 35788999999999999876655
No 472
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=78.32 E-value=49 Score=34.82 Aligned_cols=57 Identities=23% Similarity=0.392 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000489 922 IRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSL 978 (1463)
Q Consensus 922 L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~L 978 (1463)
+..++..|+..++.++.++++++.++...+.....+..+++.++......++++.++
T Consensus 64 l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 64 LRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL 120 (151)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444443333333333333333333333333333333
No 473
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=78.26 E-value=1.1e+02 Score=33.38 Aligned_cols=85 Identities=16% Similarity=0.296 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000489 912 LERELVAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHV 991 (1463)
Q Consensus 912 l~e~~~~~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~ 991 (1463)
|.+.+.+...|+.++..++..+..-+.+...|+..+.-...+..+..........+...|..+......++.+++..+..
T Consensus 100 LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~ 179 (192)
T PF11180_consen 100 LADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQ 179 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556667777777777777777777777777666666666666666666777777777777777777777777777
Q ss_pred HHHhh
Q 000489 992 LRQKA 996 (1463)
Q Consensus 992 Lkqq~ 996 (1463)
|..+.
T Consensus 180 Lq~q~ 184 (192)
T PF11180_consen 180 LQRQA 184 (192)
T ss_pred HHHHh
Confidence 76554
No 474
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=78.20 E-value=1.5 Score=48.75 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
...+.+.|.|+||||||+..+.+...+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999888775443
No 475
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=78.19 E-value=2.4e+02 Score=37.29 Aligned_cols=220 Identities=15% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000489 777 KAATVIQACWRMCKFRSAFQHHQTSIIAIQCRWRQKLAKRELRRLKQVAN-EAGALRLAKNKLERQLEDLTWRVQLEKKL 855 (1463)
Q Consensus 777 ~aa~~IQ~~~R~~~~r~~y~~~~~a~v~iQ~~~R~~~arr~~~~lk~~a~-~~~~l~~~~~~Le~ki~el~~rl~~ek~l 855 (1463)
..+..|....++.+--..+.++....-.+....+.-..-........+.. +...+......++.++..+...+.....-
T Consensus 166 ~~~~~l~~Ai~~LlGl~~~~~L~~dl~~~~~~~~~~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~ 245 (650)
T TIGR03185 166 RLASLLKEAIEVLLGLDLIDRLAGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRS 245 (650)
T ss_pred cchHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----------HHHHHHHHHHH-------------
Q 000489 856 RVSTEEAKSVEISKLQKLLESLNLELDAAKLATINECNKNAMLQNQ----------LELSLKEKSAL------------- 912 (1463)
Q Consensus 856 ~~~~~eak~~E~~~Lq~~le~l~~eL~~~~~~~~~e~~~~~~~~~e----------le~~~~e~~~l------------- 912 (1463)
...+++.-..+-..+..+.+.++.++.+++..+.+...++...... +....+.....
T Consensus 246 l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~q~~~e~~~~~~~~~~~~l 325 (650)
T TIGR03185 246 LESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQQNQLTQEEL 325 (650)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------------------------------------------HHHHHHHHHHHHHHH-HHHHhHHHHHHHhHHHHH
Q 000489 913 ----------------------------------------------ERELVAMAEIRKENA-VLKSSLDSLEKKNSTLEL 945 (1463)
Q Consensus 913 ----------------------------------------------~e~~~~~~~L~~e~~-~Lk~e~~~l~~~~~ele~ 945 (1463)
..+...+..+-.... ..+..+..+..++.+++.
T Consensus 326 ~~~~~~i~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 405 (650)
T TIGR03185 326 EERDKELLESLPKLALPAEHVKEIAAELAEIDKPATTDSEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEE 405 (650)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccccccccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 000489 946 ELIKA---------QKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHLEDENHVLRQKA 996 (1463)
Q Consensus 946 e~~el---------~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~Le~E~~~Lkqq~ 996 (1463)
++.++ .....++.+++.+++.++.+++.++..+++++..++.+...++.+.
T Consensus 406 el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 406 ELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=78.15 E-value=2e+02 Score=36.27 Aligned_cols=77 Identities=25% Similarity=0.360 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000489 917 VAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLRE----VEQKCSSLQQNMQSLEEKLSHLEDENHVL 992 (1463)
Q Consensus 917 ~~~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~----~e~~i~~L~~e~~~Lee~l~~Le~E~~~L 992 (1463)
.+......|...|...++..+++.+.+..++.++......++++|.. .|.++..|.+++..+.+++.+..++++.|
T Consensus 434 SKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 434 SKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666666666666666666666533 46677777888888888888888888877
Q ss_pred H
Q 000489 993 R 993 (1463)
Q Consensus 993 k 993 (1463)
|
T Consensus 514 K 514 (518)
T PF10212_consen 514 K 514 (518)
T ss_pred h
Confidence 7
No 477
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=78.11 E-value=0.97 Score=46.76 Aligned_cols=25 Identities=28% Similarity=0.606 Sum_probs=20.0
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQ 170 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~ 170 (1463)
..+..|+|.||+|+||+..|+.+-.
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~ 43 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHR 43 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHH
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHh
Confidence 5678899999999999988776544
No 478
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=78.10 E-value=1.6 Score=51.06 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=25.0
Q ss_pred EEEEcCCCCCCchHHHHHHHHHHHHhhc
Q 000489 150 SILVSGESGAGKTETTKLIMQYLTFVGG 177 (1463)
Q Consensus 150 sIiisGeSGaGKTe~~k~~~~yla~~~~ 177 (1463)
.|++.|++|+|||..|+.+-+++...|.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 5999999999999999999999987653
No 479
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.07 E-value=1.7e+02 Score=35.66 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=9.7
Q ss_pred HhhcCCCccchhhHH
Q 000489 607 SLAGYPTRRTYSDFV 621 (1463)
Q Consensus 607 ~~~gyp~r~~~~~F~ 621 (1463)
...|||..+.|..|+
T Consensus 75 kdlgyrgD~gyqtfL 89 (521)
T KOG1937|consen 75 KDLGYRGDTGYQTFL 89 (521)
T ss_pred HHcCCCcccchhhee
Confidence 345777777776664
No 480
>PRK02496 adk adenylate kinase; Provisional
Probab=77.99 E-value=1.6 Score=47.40 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.4
Q ss_pred EEEcCCCCCCchHHHHHHHHHH
Q 000489 151 ILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yl 172 (1463)
|+|.|.+|||||+.++.+-+.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998776
No 481
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.99 E-value=1.1 Score=50.80 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
...+.+.|.|+||||||+..|.+...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999888876554
No 482
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=77.97 E-value=2.8 Score=45.76 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=29.2
Q ss_pred HHHHHh-cCCCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 139 YRAMIS-EHQSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 139 y~~m~~-~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
.+++.. .+-++++++.|++|.|||+.++.+.+.+..
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 344444 346799999999999999999999988864
No 483
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=77.88 E-value=1.7 Score=46.57 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
...+.+.|.|++|||||+..+.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999988886554
No 484
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=77.88 E-value=43 Score=39.43 Aligned_cols=70 Identities=27% Similarity=0.400 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000489 916 LVAMAEIRKENAVLKSSLDSLEKKNSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKLSHL 985 (1463)
Q Consensus 916 ~~~~~~L~~e~~~Lk~e~~~l~~~~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l~~L 985 (1463)
+-...+|..|+..|.-+++-|+.+++++++.+.++.++..+...+++.+...++.|+.++..+.+.+...
T Consensus 97 Mv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 97 MVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667777777888888888888888888887777776666666656666666666666666555433
No 485
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=77.87 E-value=2.3 Score=46.46 Aligned_cols=48 Identities=23% Similarity=0.423 Sum_probs=31.2
Q ss_pred EEEcCCCCCCchHHHHHHHHHHHHhhcccCCCCCcHHHHHHhhcc-----HHHhhcc
Q 000489 151 ILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRNVEQQVLESNP-----LLEAFGN 202 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~ve~~il~snp-----ilEaFGn 202 (1463)
|.|+|-.|||||+.++++-... +-.--+...+-.+++..+. |.+.||.
T Consensus 2 i~itG~~gsGKst~~~~l~~~~----~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~ 54 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKY----HFPVIDADKIAHQVVEKGSPAYEKIVDHFGA 54 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhc----CCeEEeCCHHHHHHHhcCChHHHHHHHHHCH
Confidence 8899999999999888765543 1111112245556666544 7788883
No 486
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=77.86 E-value=56 Score=37.57 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=7.2
Q ss_pred HHHHHHHHhHHHHHHHhHHH
Q 000489 924 KENAVLKSSLDSLEKKNSTL 943 (1463)
Q Consensus 924 ~e~~~Lk~e~~~l~~~~~el 943 (1463)
.+...|..++..+..+++.+
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L 68 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENL 68 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 487
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=77.86 E-value=1.2e+02 Score=33.55 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=13.4
Q ss_pred HHHHHHhHHHHHHHhHHHHHHHHHHHH
Q 000489 926 NAVLKSSLDSLEKKNSTLELELIKAQK 952 (1463)
Q Consensus 926 ~~~Lk~e~~~l~~~~~ele~e~~el~~ 952 (1463)
.++|...++.++.++++.+..+..++.
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek 146 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544443
No 488
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=77.81 E-value=3.9 Score=51.69 Aligned_cols=120 Identities=28% Similarity=0.401 Sum_probs=68.0
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHhhcccC-----CCCCcHHHHHHhhccHHHh
Q 000489 125 GELSPHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVGGRAA-----GDDRNVEQQVLESNPLLEA 199 (1463)
Q Consensus 125 ~~l~PHi~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~~~~~-----~~~~~ve~~il~snpilEa 199 (1463)
..|| ||+..+.-...+ .+||.+||-||.|||||+ .|=+||+..|-... +..+.|.. +--+.-|=|.
T Consensus 48 ~~LP--I~~~r~~il~~v---e~nqvlIviGeTGsGKST---QipQyL~eaG~~~~g~I~~TQPRRVAa-vslA~RVAeE 118 (674)
T KOG0922|consen 48 ESLP--IYKYRDQILYAV---EDNQVLIVIGETGSGKST---QIPQYLAEAGFASSGKIACTQPRRVAA-VSLAKRVAEE 118 (674)
T ss_pred ccCC--HHHHHHHHHHHH---HHCCEEEEEcCCCCCccc---cHhHHHHhcccccCCcEEeecCchHHH-HHHHHHHHHH
Confidence 3455 666666554444 479999999999999997 47899987653221 11222221 1123344555
Q ss_pred hcc------ccccCCCCCCcccceEEEEEcCCCcccceeeeeecccccccc-cccCCCcccee
Q 000489 200 FGN------ARTVRNDNSSRFGKFVEIQFDTNGRISGAAIRTYLLERSRVV-QITDPERNYHC 255 (1463)
Q Consensus 200 FGn------AkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRvv-~~~~~ErnfHi 255 (1463)
.|+ .-|+|=++++ ++-++|-|=.+|-+.---+..=+|.|=-|| --...||+-|-
T Consensus 119 ~~~~lG~~VGY~IRFed~t--s~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~T 179 (674)
T KOG0922|consen 119 MGCQLGEEVGYTIRFEDST--SKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHT 179 (674)
T ss_pred hCCCcCceeeeEEEecccC--CCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHH
Confidence 555 2344433332 335566665666554444444457774444 44557888774
No 489
>PRK05439 pantothenate kinase; Provisional
Probab=77.75 E-value=3.5 Score=48.69 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=25.1
Q ss_pred cCCCeEEEEcCCCCCCchHHHHHHHHHHHH
Q 000489 145 EHQSQSILVSGESGAGKTETTKLIMQYLTF 174 (1463)
Q Consensus 145 ~~~~QsIiisGeSGaGKTe~~k~~~~yla~ 174 (1463)
.+..--|.|+|.||||||+.++.+...|..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 455667889999999999999998887754
No 490
>PRK06835 DNA replication protein DnaC; Validated
Probab=77.60 E-value=3.8 Score=48.95 Aligned_cols=29 Identities=28% Similarity=0.364 Sum_probs=25.3
Q ss_pred CCeEEEEcCCCCCCchHHHHHHHHHHHHh
Q 000489 147 QSQSILVSGESGAGKTETTKLIMQYLTFV 175 (1463)
Q Consensus 147 ~~QsIiisGeSGaGKTe~~k~~~~yla~~ 175 (1463)
....+++.|.+|+|||..+..|.+.+..-
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 34889999999999999999999888754
No 491
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=77.58 E-value=1.8 Score=46.40 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=22.3
Q ss_pred eEEEEcCCCCCCchHHHHHHHHHHH
Q 000489 149 QSILVSGESGAGKTETTKLIMQYLT 173 (1463)
Q Consensus 149 QsIiisGeSGaGKTe~~k~~~~yla 173 (1463)
+.|+|.|-+|||||+.++.+-+.|.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988763
No 492
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=77.57 E-value=1.7 Score=49.61 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIMQY 171 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~~y 171 (1463)
...+.+.|.|+||||||+..|.+.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999998887543
No 493
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=77.56 E-value=1.7 Score=49.41 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=0.0
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIM 169 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~ 169 (1463)
...+.+.|.|+||||||+..+.+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLT 48 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 494
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.47 E-value=1.7 Score=49.50 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=0.0
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIM 169 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~ 169 (1463)
...+.+.|.|+||||||+..|.++
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLN 48 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 495
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=77.43 E-value=3.2 Score=45.04 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHhcCCCeEEEEcCCCCCCchHHHHHHHHHHHHhh
Q 000489 128 SPHVFAVADASYRAMISEHQSQSILVSGESGAGKTETTKLIMQYLTFVG 176 (1463)
Q Consensus 128 ~PHi~avA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~k~~~~yla~~~ 176 (1463)
.|.+-..+-..+....--...+.+++.|.+|.|||..+..+.+.+..-|
T Consensus 27 ~~~~~~~~~~~l~~~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g 75 (178)
T PF01695_consen 27 ERGIDKAQIAQLAALEFIENGENLILYGPPGTGKTHLAVAIANEAIRKG 75 (178)
T ss_dssp -------HHHHHHHH-S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHhcCCCcccCeEEEEEhhHhHHHHHHHHHHHHHhccCC
No 496
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=77.43 E-value=1.7 Score=48.71 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=0.0
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIM 169 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~ 169 (1463)
...+.+.|.|+||||||+..+.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIM 47 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHh
No 497
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=77.42 E-value=3.6e+02 Score=38.94 Aligned_cols=227 Identities=14% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 000489 763 GFSIRERFLHRKRHKAATVIQACWRMCKFRSAFQHHQTSIIAIQCRWRQKLAKREL----RRLKQVANEAGALRLAKNKL 838 (1463)
Q Consensus 763 g~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~y~~~~~a~v~iQ~~~R~~~arr~~----~~lk~~a~~~~~l~~~~~~L 838 (1463)
|..+|..++..+...-...|.. .+.....+...+..++...+..-++..- ..++.+...+..........
T Consensus 732 G~~aR~~~R~~ri~el~~~Iae------L~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a 805 (1353)
T TIGR02680 732 GAAARERARLRRIAELDARLAA------VDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESA 805 (1353)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000489 839 ERQLEDLTWRVQLEKKLRVSTEEAKSVE------------ISKLQKLLESLNLELDAAKLATINECNKNAMLQNQLELSL 906 (1463)
Q Consensus 839 e~ki~el~~rl~~ek~l~~~~~eak~~E------------~~~Lq~~le~l~~eL~~~~~~~~~e~~~~~~~~~ele~~~ 906 (1463)
.+++.....++.....--.....+.... ...+...+++....+..+.....+..............+.
T Consensus 806 ~~~l~~a~~~l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le 885 (1353)
T TIGR02680 806 ERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAA 885 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000489 907 KEKSALERELVAMAEIRKENAVLKSSLDSLEKK----NSTLELELIKAQKENNNTIEKLREVEQKCSSLQQNMQSLEEKL 982 (1463)
Q Consensus 907 ~e~~~l~e~~~~~~~L~~e~~~Lk~e~~~l~~~----~~ele~e~~el~~~~~~l~~el~~~e~~i~~L~~e~~~Lee~l 982 (1463)
.-...+.+.......+..+...+..++..+... ++++..++.+...+.+.+..++..++++...+.+....+++++
T Consensus 886 ~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 886 RAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHh
Q 000489 983 SHLEDENHVLRQK 995 (1463)
Q Consensus 983 ~~Le~E~~~Lkqq 995 (1463)
...+.........
T Consensus 966 ~~a~~~~~~~~~~ 978 (1353)
T TIGR02680 966 AEADATLDERAEA 978 (1353)
T ss_pred HHHHHHHHHHHHH
No 498
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.36 E-value=1.7 Score=48.55 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=0.0
Q ss_pred CCCeEEEEcCCCCCCchHHHHHHH
Q 000489 146 HQSQSILVSGESGAGKTETTKLIM 169 (1463)
Q Consensus 146 ~~~QsIiisGeSGaGKTe~~k~~~ 169 (1463)
.. +.+.|.|+||||||+..+.++
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~ 44 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIA 44 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHh
No 499
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=77.28 E-value=2 Score=45.12 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=0.0
Q ss_pred EEEcCCCCCCchHHHHHHHHHHHHhh
Q 000489 151 ILVSGESGAGKTETTKLIMQYLTFVG 176 (1463)
Q Consensus 151 IiisGeSGaGKTe~~k~~~~yla~~~ 176 (1463)
|.|||..|+|||+.++.+...|..-+
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcC
No 500
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.25 E-value=2.8 Score=53.87 Aligned_cols=54 Identities=20% Similarity=0.434 Sum_probs=0.0
Q ss_pred HHhhCCCCCCCChhHHHHHHHHHHHHHhcCC-CeEEEEcCCCCCCchHHHHHHHHHH
Q 000489 117 EQYKGAPFGELSPHVFAVADASYRAMISEHQ-SQSILVSGESGAGKTETTKLIMQYL 172 (1463)
Q Consensus 117 ~~y~~~~~~~l~PHi~avA~~Ay~~m~~~~~-~QsIiisGeSGaGKTe~~k~~~~yl 172 (1463)
++|+-+.+.++--|-.. -++..++...++ ..++|++|..|.|||++++.+-+.|
T Consensus 7 rKyRPktFddVIGQe~v--v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 7 RKYRPRNFNELVGQNHV--SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred HHhCCCCHHHhcCcHHH--HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Done!