Query 000492
Match_columns 1463
No_of_seqs 382 out of 1513
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 10:32:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000492.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000492hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0892 Protein kinase ATM/Tel 100.0 3E-173 6E-178 1669.6 79.9 1270 5-1463 1510-2806(2806)
2 KOG0890 Protein kinase of the 100.0 3E-155 6E-160 1498.0 83.2 1217 11-1463 1080-2382(2382)
3 KOG0891 DNA-dependent protein 100.0 7E-104 1E-108 1055.1 50.6 1086 183-1463 1129-2341(2341)
4 COG5032 TEL1 Phosphatidylinosi 100.0 3.3E-79 7.3E-84 842.0 61.5 1086 173-1463 907-2105(2105)
5 KOG0889 Histone acetyltransfer 100.0 3.1E-65 6.7E-70 676.1 65.2 966 331-1463 2414-3550(3550)
6 cd05171 PIKKc_ATM Ataxia telan 100.0 7.2E-69 1.6E-73 615.7 26.4 274 1103-1380 1-279 (279)
7 cd05170 PIKKc_SMG1 Suppressor 100.0 3E-67 6.5E-72 608.9 25.5 276 1103-1379 1-306 (307)
8 cd05163 TRRAP TRansformation/t 100.0 1.2E-66 2.7E-71 587.4 23.4 247 1103-1379 1-252 (253)
9 cd05169 PIKKc_TOR TOR (Target 100.0 1.8E-66 4E-71 598.5 23.8 276 1103-1380 1-280 (280)
10 cd05172 PIKKc_DNA-PK DNA-depen 100.0 1.8E-64 3.9E-69 564.0 23.7 233 1103-1379 1-234 (235)
11 cd00892 PIKKc_ATR ATR (Ataxia 100.0 4.2E-63 9.2E-68 554.1 23.6 236 1103-1379 1-236 (237)
12 cd05164 PIKKc Phosphoinositide 100.0 1.4E-59 3.1E-64 521.3 23.1 222 1103-1373 1-222 (222)
13 cd00142 PI3Kc_like Phosphoinos 100.0 9.9E-55 2.1E-59 483.4 22.8 219 1103-1373 1-219 (219)
14 cd00891 PI3Kc Phosphoinositide 100.0 2.3E-53 4.9E-58 497.5 28.7 250 1083-1379 47-303 (352)
15 cd00896 PI3Kc_III Phosphoinosi 100.0 5.1E-53 1.1E-57 493.4 27.7 287 1084-1463 52-350 (350)
16 cd05166 PI3Kc_II Phosphoinosit 100.0 2E-52 4.3E-57 488.3 28.0 248 1084-1379 48-304 (353)
17 cd05177 PI3Kc_C2_gamma Phospho 100.0 2.4E-51 5.2E-56 476.3 27.8 248 1084-1379 49-305 (354)
18 cd05165 PI3Kc_I Phosphoinositi 100.0 3.1E-51 6.6E-56 477.3 26.0 250 1084-1379 53-316 (366)
19 cd05168 PI4Kc_III_beta Phospho 100.0 8.4E-52 1.8E-56 471.7 20.4 268 1115-1461 14-287 (293)
20 smart00146 PI3Kc Phosphoinosit 100.0 2.8E-51 6.1E-56 450.5 19.4 198 1133-1380 1-199 (202)
21 cd00894 PI3Kc_IB_gamma Phospho 100.0 5.5E-49 1.2E-53 456.7 26.2 249 1083-1378 53-314 (365)
22 cd05174 PI3Kc_IA_delta Phospho 100.0 5E-49 1.1E-53 456.5 24.7 249 1085-1378 53-310 (361)
23 cd05176 PI3Kc_C2_alpha Phospho 100.0 1.7E-48 3.6E-53 450.1 29.0 247 1084-1378 48-303 (353)
24 cd00893 PI4Kc_III Phosphoinosi 100.0 2.6E-49 5.6E-54 450.5 21.2 222 1111-1379 9-238 (289)
25 cd05173 PI3Kc_IA_beta Phosphoi 100.0 2E-48 4.4E-53 453.1 24.8 249 1085-1379 53-311 (362)
26 PF00454 PI3_PI4_kinase: Phosp 100.0 4.1E-49 9E-54 445.0 16.0 229 1131-1379 1-234 (235)
27 cd05167 PI4Kc_III_alpha Phosph 100.0 1.3E-47 2.8E-52 439.5 24.4 260 1107-1449 15-294 (311)
28 cd00895 PI3Kc_C2_beta Phosphoi 100.0 1.9E-45 4.2E-50 424.8 28.5 246 1084-1377 49-303 (354)
29 cd05175 PI3Kc_IA_alpha Phospho 100.0 2.4E-44 5.3E-49 415.8 25.6 248 1084-1378 52-315 (366)
30 KOG0905 Phosphoinositide 3-kin 100.0 1.4E-37 2.9E-42 379.5 27.7 419 897-1380 859-1299(1639)
31 KOG0906 Phosphatidylinositol 3 100.0 3.7E-37 8E-42 360.0 29.4 418 895-1384 308-794 (843)
32 KOG0904 Phosphatidylinositol 3 100.0 8.3E-36 1.8E-40 358.2 28.2 415 895-1379 578-1027(1076)
33 PF02259 FAT: FAT domain; Int 100.0 1.6E-34 3.5E-39 344.2 30.7 317 509-921 1-352 (352)
34 KOG0902 Phosphatidylinositol 4 100.0 2.9E-28 6.2E-33 304.3 28.8 411 897-1385 1285-1757(1803)
35 KOG0903 Phosphatidylinositol 4 99.9 1.3E-25 2.8E-30 269.0 17.2 197 1129-1372 585-786 (847)
36 PTZ00303 phosphatidylinositol 99.9 9.6E-25 2.1E-29 257.5 12.6 164 1117-1338 1026-1200(1374)
37 PF02260 FATC: FATC domain; I 99.3 2.2E-13 4.9E-18 104.2 0.9 32 1432-1463 2-33 (33)
38 KOG0892 Protein kinase ATM/Tel 98.7 1.9E-08 4.1E-13 136.2 7.0 242 1113-1381 2172-2416(2806)
39 TIGR02917 PEP_TPR_lipo putativ 95.8 1.4 3.1E-05 58.8 26.3 60 682-749 839-898 (899)
40 smart00145 PI3Ka Phosphoinosit 95.1 0.067 1.4E-06 58.5 8.2 97 895-997 43-154 (184)
41 cd00872 PI3Ka_I Phosphoinositi 94.7 0.044 9.5E-07 59.1 5.3 96 895-996 38-148 (171)
42 cd00870 PI3Ka_III Phosphoinosi 94.5 0.065 1.4E-06 57.6 6.0 100 895-994 45-160 (166)
43 cd00864 PI3Ka Phosphoinositide 93.6 0.13 2.8E-06 54.7 6.0 94 896-995 39-147 (152)
44 PF00613 PI3Ka: Phosphoinositi 91.6 0.21 4.6E-06 54.8 4.6 96 896-997 45-155 (184)
45 cd00869 PI3Ka_II Phosphoinosit 91.1 0.4 8.6E-06 51.7 6.0 95 895-996 38-148 (169)
46 PLN03218 maturation of RBCL 1; 90.3 50 0.0011 46.0 26.2 82 380-490 472-563 (1060)
47 PLN03081 pentatricopeptide (PP 90.1 33 0.00071 45.6 23.9 290 381-751 260-557 (697)
48 TIGR02917 PEP_TPR_lipo putativ 89.6 87 0.0019 41.8 40.4 66 679-752 668-733 (899)
49 PRK15174 Vi polysaccharide exp 87.8 1.1E+02 0.0023 40.7 25.9 113 334-490 44-165 (656)
50 PRK10747 putative protoheme IX 87.4 62 0.0014 39.9 22.3 59 680-747 328-386 (398)
51 PLN03218 maturation of RBCL 1; 86.8 40 0.00088 46.9 21.8 300 334-709 474-783 (1060)
52 PRK11447 cellulose synthase su 81.4 2.6E+02 0.0057 39.7 30.3 66 679-752 636-701 (1157)
53 PLN03081 pentatricopeptide (PP 80.7 69 0.0015 42.6 19.9 283 335-709 262-557 (697)
54 PF13575 DUF4135: Domain of un 79.2 10 0.00022 46.3 10.6 111 1127-1314 68-178 (370)
55 PLN03077 Protein ECB2; Provisi 76.3 3E+02 0.0066 37.6 24.4 52 381-432 425-482 (857)
56 PRK15174 Vi polysaccharide exp 75.6 2.2E+02 0.0047 37.8 22.0 67 679-753 283-349 (656)
57 cd00871 PI4Ka Phosphoinositide 75.2 7 0.00015 42.5 6.6 63 928-998 83-148 (175)
58 TIGR02906 spore_CotS spore coa 71.7 54 0.0012 38.5 13.8 31 1279-1311 184-214 (313)
59 cd05145 RIO1_like RIO kinase f 71.1 4.8 0.0001 44.1 4.4 48 1287-1358 142-189 (190)
60 PF13432 TPR_16: Tetratricopep 70.6 21 0.00045 31.4 7.7 61 685-753 2-62 (65)
61 KOG1129 TPR repeat-containing 70.4 47 0.001 39.3 11.9 85 336-435 227-320 (478)
62 PLN03077 Protein ECB2; Provisi 69.0 4.3E+02 0.0093 36.1 32.3 155 379-571 322-482 (857)
63 KOG4626 O-linked N-acetylgluco 68.1 3.6E+02 0.0079 34.9 27.3 90 332-435 48-146 (966)
64 PF14559 TPR_19: Tetratricopep 67.3 12 0.00026 33.2 5.4 56 691-754 2-57 (68)
65 TIGR02172 Fb_sc_TIGR02172 Fibr 66.8 58 0.0013 36.9 12.1 26 1284-1311 155-180 (226)
66 TIGR00990 3a0801s09 mitochondr 66.6 2.3E+02 0.005 37.1 19.2 51 691-749 519-569 (615)
67 cd05147 RIO1_euk RIO kinase fa 62.3 4.7 0.0001 44.4 2.1 25 1287-1313 142-166 (190)
68 PF12688 TPR_5: Tetratrico pep 61.7 18 0.0004 36.9 6.1 55 412-493 8-62 (120)
69 PRK11788 tetratricopeptide rep 61.0 3.6E+02 0.0079 32.5 28.5 294 337-789 40-349 (389)
70 KOG0608 Warts/lats-like serine 59.7 6.3 0.00014 49.8 2.7 38 1273-1313 739-778 (1034)
71 KOG3365 NADH:ubiquinone oxidor 59.0 5.8 0.00013 40.7 1.8 37 1416-1462 93-129 (145)
72 PF13371 TPR_9: Tetratricopept 56.3 51 0.0011 29.5 7.6 60 688-755 3-62 (73)
73 TIGR03843 conserved hypothetic 55.2 10 0.00022 43.1 3.1 45 1273-1318 134-178 (253)
74 PF04781 DUF627: Protein of un 53.6 31 0.00067 34.7 5.9 62 727-789 1-64 (111)
75 PF13429 TPR_15: Tetratricopep 53.3 18 0.00039 42.0 5.1 109 334-488 80-199 (280)
76 PF14559 TPR_19: Tetratricopep 52.9 22 0.00047 31.5 4.5 52 417-498 3-54 (68)
77 PF13176 TPR_7: Tetratricopept 52.6 18 0.0004 28.4 3.4 25 410-434 4-28 (36)
78 cd05151 ChoK Choline Kinase (C 52.2 11 0.00024 39.8 2.8 29 1281-1311 106-134 (170)
79 PRK10370 formate-dependent nit 50.8 1.8E+02 0.0039 32.3 12.2 69 677-753 70-141 (198)
80 PF08424 NRDE-2: NRDE-2, neces 49.4 1.2E+02 0.0027 36.3 11.4 98 639-737 82-211 (321)
81 KOG3087 Serine/threonine prote 48.7 98 0.0021 34.4 9.1 28 1287-1314 137-166 (229)
82 PF02985 HEAT: HEAT repeat; I 48.2 23 0.00049 27.0 3.2 29 94-122 1-29 (31)
83 TIGR02795 tol_pal_ybgF tol-pal 47.8 1.8E+02 0.0039 28.1 10.6 83 682-769 4-86 (119)
84 TIGR03724 arch_bud32 Kae1-asso 47.2 14 0.00031 40.2 2.8 24 1286-1311 113-136 (199)
85 PF13414 TPR_11: TPR repeat; P 46.7 89 0.0019 27.6 7.5 63 680-750 3-66 (69)
86 COG0661 AarF Predicted unusual 44.4 14 0.00031 47.0 2.5 49 1141-1200 206-256 (517)
87 cd05144 RIO2_C RIO kinase fami 44.1 17 0.00038 39.8 2.9 30 1285-1315 147-176 (198)
88 PRK10359 lipopolysaccharide co 43.1 15 0.00033 41.9 2.2 23 1287-1311 159-181 (232)
89 PRK04750 ubiB putative ubiquin 42.6 14 0.0003 47.4 2.0 26 1285-1311 282-311 (537)
90 PF06293 Kdo: Lipopolysacchari 41.8 93 0.002 34.6 8.3 48 1147-1203 56-111 (206)
91 cd05119 RIO RIO kinase family, 41.5 18 0.00039 38.9 2.5 26 1286-1313 138-163 (187)
92 TIGR02521 type_IV_pilW type IV 41.5 2.4E+02 0.0053 30.2 11.5 85 335-433 34-127 (234)
93 PRK14879 serine/threonine prot 40.5 21 0.00045 39.3 2.8 24 1286-1311 118-141 (211)
94 smart00090 RIO RIO-like kinase 39.5 21 0.00046 40.7 2.8 28 1286-1315 172-199 (237)
95 cd04792 LanM-like LanM-like pr 39.2 2.4E+02 0.0052 38.4 13.1 108 1127-1314 111-218 (825)
96 PF01636 APH: Phosphotransfera 39.2 20 0.00043 39.6 2.4 33 1279-1311 163-195 (239)
97 PF13414 TPR_11: TPR repeat; P 38.9 69 0.0015 28.3 5.5 50 409-488 7-57 (69)
98 TIGR01982 UbiB 2-polyprenylphe 38.5 21 0.00045 44.8 2.6 24 1287-1311 281-304 (437)
99 PF13424 TPR_12: Tetratricopep 38.2 1E+02 0.0022 28.0 6.7 70 679-749 4-73 (78)
100 TIGR02552 LcrH_SycD type III s 37.1 2E+02 0.0043 28.9 9.3 67 679-753 50-116 (135)
101 PF13428 TPR_14: Tetratricopep 36.5 99 0.0022 25.2 5.6 31 725-755 4-34 (44)
102 KOG0616 cAMP-dependent protein 35.6 21 0.00045 41.8 1.7 26 1287-1313 168-193 (355)
103 KOG0594 Protein kinase PCTAIRE 35.3 25 0.00054 41.9 2.4 28 1287-1315 144-171 (323)
104 PF01163 RIO1: RIO1 family; I 34.8 17 0.00036 40.2 0.8 44 1287-1337 131-174 (188)
105 PF13432 TPR_16: Tetratricopep 34.7 77 0.0017 27.7 5.0 50 411-490 3-52 (65)
106 cd00189 TPR Tetratricopeptide 34.6 2.7E+02 0.0058 24.2 8.9 62 683-752 3-64 (100)
107 PRK09550 mtnK methylthioribose 33.1 6E+02 0.013 31.6 13.9 30 1281-1312 222-251 (401)
108 KOG0603 Ribosomal protein S6 k 33.0 29 0.00063 44.4 2.6 40 1275-1314 427-466 (612)
109 COG3642 Mn2+-dependent serine/ 32.2 36 0.00077 37.7 2.8 33 1169-1202 57-91 (204)
110 PF13525 YfiO: Outer membrane 31.5 3.5E+02 0.0077 29.9 10.8 82 681-767 6-87 (203)
111 PRK12274 serine/threonine prot 31.5 36 0.00077 38.5 2.8 25 1287-1312 115-140 (218)
112 PRK01723 3-deoxy-D-manno-octul 31.3 34 0.00073 39.2 2.6 25 1286-1311 165-189 (239)
113 KOG2076 RNA polymerase III tra 31.1 8E+02 0.017 33.2 14.8 32 722-753 139-170 (895)
114 PF00515 TPR_1: Tetratricopept 30.8 71 0.0015 24.1 3.6 25 411-435 7-31 (34)
115 PF13429 TPR_15: Tetratricopep 30.7 1.7E+02 0.0036 33.9 8.4 87 335-435 149-244 (280)
116 TIGR00990 3a0801s09 mitochondr 30.7 1.3E+03 0.029 30.0 39.5 77 680-767 331-407 (615)
117 PF07719 TPR_2: Tetratricopept 29.6 56 0.0012 24.5 2.8 25 411-435 7-31 (34)
118 PF04184 ST7: ST7 protein; In 29.5 1.4E+02 0.0031 37.6 7.5 62 722-784 259-321 (539)
119 TIGR02521 type_IV_pilW type IV 28.6 5E+02 0.011 27.7 11.3 86 336-435 69-165 (234)
120 cd05120 APH_ChoK_like Aminogly 28.4 47 0.001 33.4 2.9 25 1287-1312 113-137 (155)
121 PRK05685 fliS flagellar protei 27.8 3.3E+02 0.0072 28.3 9.0 48 548-595 39-93 (132)
122 KOG1006 Mitogen-activated prot 27.7 37 0.0008 39.3 2.0 59 1287-1346 192-268 (361)
123 TIGR03302 OM_YfiO outer membra 26.5 4.6E+02 0.0099 29.2 10.8 84 679-767 32-115 (235)
124 PLN03088 SGT1, suppressor of 26.3 2.8E+02 0.006 33.8 9.5 87 335-435 5-100 (356)
125 PF13424 TPR_12: Tetratricopep 26.1 1.3E+02 0.0028 27.3 5.2 26 409-434 9-34 (78)
126 PF06176 WaaY: Lipopolysacchar 26.0 53 0.0011 37.4 2.9 22 1287-1310 159-180 (229)
127 cd05156 ChoK_euk Choline Kinas 26.0 90 0.0019 36.6 5.1 33 1279-1311 176-211 (302)
128 PF12688 TPR_5: Tetratrico pep 25.9 2.2E+02 0.0048 29.1 7.1 62 679-745 37-98 (120)
129 KOG1155 Anaphase-promoting com 25.8 2.2E+02 0.0047 35.6 8.0 83 337-433 403-494 (559)
130 cd05154 ACAD10_11_like Acyl-Co 25.6 50 0.0011 36.2 2.7 32 1280-1311 172-204 (223)
131 PRK15179 Vi polysaccharide bio 25.5 3.1E+02 0.0067 36.6 10.2 118 335-496 89-216 (694)
132 PF13513 HEAT_EZ: HEAT-like re 25.0 90 0.0019 26.7 3.6 34 87-120 22-55 (55)
133 TIGR02795 tol_pal_ybgF tol-pal 24.7 3.9E+02 0.0084 25.7 8.7 69 682-755 41-109 (119)
134 PF13371 TPR_9: Tetratricopept 24.1 1.8E+02 0.0038 25.9 5.6 50 413-492 3-52 (73)
135 KOG0598 Ribosomal protein S6 k 23.6 39 0.00085 40.6 1.4 25 1287-1312 149-173 (357)
136 cd05155 APH_ChoK_like_1 Unchar 23.5 61 0.0013 36.6 2.9 30 1280-1311 162-192 (235)
137 PF02561 FliS: Flagellar prote 23.4 5.1E+02 0.011 26.4 9.3 48 548-595 33-87 (122)
138 PRK15359 type III secretion sy 22.8 5.4E+02 0.012 26.8 9.7 67 679-753 57-123 (144)
139 PF06702 DUF1193: Protein of u 22.4 77 0.0017 35.8 3.2 90 1274-1376 92-183 (221)
140 cd05157 ETNK_euk Ethanolamine 22.2 1.5E+02 0.0033 33.2 5.8 32 1280-1311 168-199 (235)
141 PRK10866 outer membrane biogen 22.1 5.8E+02 0.013 29.3 10.5 81 681-766 33-113 (243)
142 PF01633 Choline_kinase: Choli 22.0 1E+02 0.0022 34.3 4.2 32 1280-1311 141-172 (211)
143 PF12895 Apc3: Anaphase-promot 21.9 2.3E+02 0.005 26.3 6.0 73 346-431 3-84 (84)
144 PF09976 TPR_21: Tetratricopep 21.8 2.4E+02 0.0051 29.3 6.7 61 683-748 51-111 (145)
145 PF00069 Pkinase: Protein kina 21.7 92 0.002 34.8 4.0 48 1286-1334 121-171 (260)
146 PRK10803 tol-pal system protei 21.4 5.5E+02 0.012 30.0 10.2 83 681-768 143-226 (263)
147 TIGR00208 fliS flagellar biosy 21.4 6E+02 0.013 26.1 9.3 49 547-595 34-89 (124)
148 PRK15180 Vi polysaccharide bio 20.8 1.5E+02 0.0033 36.8 5.4 110 378-523 285-408 (831)
149 cd00180 PKc Catalytic domain o 20.7 2.4E+02 0.0052 29.6 6.7 29 1285-1313 114-142 (215)
150 PF13174 TPR_6: Tetratricopept 20.4 1.5E+02 0.0032 21.8 3.6 30 725-754 3-32 (33)
151 TIGR00540 hemY_coli hemY prote 20.2 1.7E+03 0.036 27.5 21.5 60 681-747 336-395 (409)
152 PF13428 TPR_14: Tetratricopep 20.2 1.1E+02 0.0024 24.9 3.1 25 411-435 7-31 (44)
No 1
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.7e-173 Score=1669.59 Aligned_cols=1270 Identities=40% Similarity=0.589 Sum_probs=1009.4
Q ss_pred cccCCChhHHHHHHHHHHhhcCCCcccHHHHHHHHHhhhCCCCCcEEEEecCCCccccccccCCCCCCCCCccceeccCc
Q 000492 5 VDWHSDHDIVHAVWTLVHMCCSDDASSIRAWVSDFISRVGIGDPHCVVFHLPRDSIYMHACRPINHGSGSATEFNFHLDA 84 (1463)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1463)
.+|+.+++++..+|..+++-....+-+.....-+|+.+++..|+|.++|++|+..+++|+-.-..+. .+.-+.-.+-.
T Consensus 1510 ~~~q~~~e~v~~~~~~~q~~~~~~~~~~~e~~~~~~~~v~~~~~~~L~~~~~~~~~~s~g~~i~~~~--~~~n~~~~~K~ 1587 (2806)
T KOG0892|consen 1510 WFWQKSPEIVDLVHYYPQTDPRLCDTSNYEPSKDFLWKVICQDDCSLLFKLPILLDSSIGIQIRMFF--EGSNIMELTKN 1587 (2806)
T ss_pred hHHhcCccceechhhcccCChhhhhhcccCchhhhhhchhccccceEEEEcCcccccchhhhhhhcc--ccchhhhhhhh
Confidence 4799999999999999999999999999999999999999999999999999998877754432222 23334444556
Q ss_pred cchHHHHHHHHHHHHHhhhcCcchhhchHHHHHHHHhcccccchhhhchhHHHHHHHHHhhccCcchhhhhhhhhhhhhh
Q 000492 85 GISEELLIAVLKILKKYLMDDSVQIVDMTSQTLRGILSTEKGQRAVMSFDSYERSLLEVHSKGVNVELVETFLLDLERKF 164 (1463)
Q Consensus 85 ~~~~~~~~~il~~l~~~l~~~~~~~~~~a~~~L~~ils~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (1463)
++.++........+..+..+..+.+.....++....+++-.+......++.|.+.+++++
T Consensus 1588 ~i~~~dk~~~~~~~~~~~~~~~~~~~~il~~t~~es~s~w~s~~~ls~f~~c~~~~~~~~-------------------- 1647 (2806)
T KOG0892|consen 1588 LIFPLDKITLDSFLKTLVSEEGSFIIDILQQTNNESLSNWLSEFALKLFNMCGRSSTTHS-------------------- 1647 (2806)
T ss_pred hccchhHHHHHHHHHHHhhccchhHHHHHhhhhccchhhHHHHHHHHHHHHHhccCCchh--------------------
Confidence 788888888889999999999999999999999999999888888777888877776632
Q ss_pred hcCCCCCCCCcccccCCCCHHhhHHHHHHHhhccCCchhhhhcHHHHhhcHhHHHHHhHHHHHHHhcCCCcchhHHHHHH
Q 000492 165 KANGISPEKSTVWETDGKTFETWICPLTYSLIGCCNDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGSKNVDVDLQKLIS 244 (1463)
Q Consensus 165 ~~~~~~~~~~~~w~~~~~s~~eWir~ls~~Ll~~~~~~~Lr~~~~l~~~~~~~A~~LfP~~v~~~~~e~d~~~~~~~~ls 244 (1463)
|.++......|++.|+..+|-.+.+.. |..+....--+-+.++|.+..+-
T Consensus 1648 ------------~st~~~~~~t~i~~~i~~~l~~~s~~~---~~~~~~~~~yi~~~~~~sl~~n~--------------- 1697 (2806)
T KOG0892|consen 1648 ------------LSTYMANFSTSICQLIICLLLLESDFN---PGNNLKQKDYIFELILSSLLKNS--------------- 1697 (2806)
T ss_pred ------------hccccccccHHHHHHHHHHHHhhcccc---HHHHHHHHHHHHHHHhhccccch---------------
Confidence 444445568899999988874333332 44555544444444444433110
Q ss_pred HHHHhhhhhcchhhHHHHHHHHHHHHHHHHhhHhhhccCCCCCcccccccccCCCCCCCccchhhhhhhhhhcccccccc
Q 000492 245 SQVQKYIFTESNKLIKSIQVFLNALNELRLCHVMERSSSVPPKRESSKYVKHSGSSAKPRSTSAKARDVVATSNATMTTS 324 (1463)
Q Consensus 245 ~~~~~~~~~~~~~~~~siq~~l~~~~~Lr~~~~ae~~~~~p~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 324 (1463)
-....+-+|.+.++|.+ ++-.+ -+.
T Consensus 1698 --------------~~~~~m~~ni~~~~~~~---~~~~~--------------------------------------~n~ 1722 (2806)
T KOG0892|consen 1698 --------------NSIFKMDMNILKYLRRQ---LGCHA--------------------------------------FNP 1722 (2806)
T ss_pred --------------hHHHHHHHHHHHHHHHh---hchhh--------------------------------------hcc
Confidence 01222344555555543 11100 123
Q ss_pred cccccccccCHHHHHHHHHhhCchhhhhhhhHhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCCchhhhhhhc
Q 000492 325 WDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ 404 (1463)
Q Consensus 325 ~~~~~wL~Id~~~lA~aA~~C~AyatALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~ 404 (1463)
|...+|+++++...+-.+.+|.+|-..++|.=+.-.+ ..+..+.....+++|.++|++|++||+.||+..
T Consensus 1723 ~~~~~~~~~~~~~~~~~~~~~~~~e~s~~~~t~~~~k----------~k~~e~~~~~lqDil~~~y~~I~~pD~lyG~~~ 1792 (2806)
T KOG0892|consen 1723 FEIYYWLPIVYSVAASTAYDCLLFEYSLLSLTIHSPK----------NKRDELDITLLQDILKKAYESINCPDALYGIKR 1792 (2806)
T ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHHHHHhhcCcc----------cchhHHHHHHHHHHHHHHHhhCCCcchhcccCC
Confidence 4566789999999999999998888877776542211 111122334456677777999999999999998
Q ss_pred ccchh-hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhc
Q 000492 405 SHKLS-SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVG 483 (1463)
Q Consensus 405 ~~~l~-~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG 483 (1463)
...++ .++..|||+++|.+||..||..-. .|+ + ....|.+++|++.|
T Consensus 1793 ~~~~~~~~l~~~~he~~w~~aL~~~d~~~~------------------~~s-------------s-~~~~~~~~sLq~~g 1840 (2806)
T KOG0892|consen 1793 PTSLKNLILITAEHEKNWPRALSYYDLADM------------------YPS-------------S-EDEAGFINSLQNAG 1840 (2806)
T ss_pred cccccccccchhhhhhhHHHHHHhhcchhh------------------ccc-------------h-HhHhHHHHHHHHhc
Confidence 77777 689999999999999999998643 133 1 12489999999999
Q ss_pred hhhHHHHhhhccccccCCCCCCcchhHHHHHHHhccCCCCCCccccCCCCCCCCCcccchhhhhHHHHHHHHhcCChHHH
Q 000492 484 CMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEF 563 (1463)
Q Consensus 484 ~~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrLg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~~L~al~~~d~~~~ 563 (1463)
+.|++..|++|++... ..++++..+..|++|||+|+||...+++-+ .+...+..|+..+|.+++|+++++++++
T Consensus 1841 ~~~I~~~y~~Gl~~~~--~~~~~~~~e~~Ye~awr~g~Wd~~t~~~~~----~~~~~~~~y~e~~f~~l~al~ere~e~~ 1914 (2806)
T KOG0892|consen 1841 FFHILEFYIDGLKSND--KIDEPSNEELVYEAAWRLGKWDILTLSLVD----QNKTKGDYYHESLFEALRALHEREIEGS 1914 (2806)
T ss_pred chhHHHHHhcChhhhh--hhhhhhhhhhhHHHHHhcCCcccCCcchhh----hhhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999876 567888889999999999999986544311 1445677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhcc-CCccccccccccccCCCCCcchhhhhHHH
Q 000492 564 YRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSS-GESINIYPEKQKIVSEPVIPTVGQLSWLN 642 (1463)
Q Consensus 564 ~~~i~~aR~~l~~~Lsa~s~ESy~~~Y~~lvrLq~L~ELe~i~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 642 (1463)
..+++.+|...+..++..+.|+....|+.+.+||.+.+||.+.++.+.+. ++..-....+.....++..+.....+.+.
T Consensus 1915 yl~le~a~~~~v~~i~~~see~~~~~y~~l~~L~~l~~l~~i~~l~~~~~~~~~~~~~~~k~~t~~q~~~~~~~~~~~~~ 1994 (2806)
T KOG0892|consen 1915 YLHLEDARNKKVLLINPNSEESSLSFYATLYDLQFLVTLEPIRCLQSTADKHQSNTDILQKWKTNLQLSSQLMECLSLLI 1994 (2806)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhhHhhhhhhcchhhhhHHHHHHHHHHhhccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999876322 00000000000000011111122233333
Q ss_pred HHHHHHHHhhccchhhhhhhHHHHHHHHHhhccchHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhh
Q 000492 643 TEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYW 722 (1463)
Q Consensus 643 ~~W~~rl~~~q~~~~~~EpiL~~R~~vl~il~~~~~~~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~ 722 (1463)
..|+..+...+.+...-++.++.+..++...++....+..-.+.+.+.++-.+ .+.+...+.+.++
T Consensus 1995 ~d~n~l~s~~~l~~~l~~~~~~~~~~~l~~~g~e~~~la~~~~~~~~~~~~~r--~~~~i~~~~~~~~------------ 2060 (2806)
T KOG0892|consen 1995 EDRNVLLSLLQLHKQLSESQLADLASLLKYYGLELCKLAESFLIADLLQNIAR--AFPVIMLSIKLLC------------ 2060 (2806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhchhhHHhHHH--hhHHHHHHHHHHh------------
Confidence 33443333333333333333343333333333333333333333333333222 1222223332222
Q ss_pred hHhHHHHHHHHHcCChHH-------------HHHHHHHH-HhhccCCCchhhHHHHHhHHHHHhhcCChHHHHHhhhchh
Q 000492 723 LGRLEEAKLLRAQGQHEM-------------AINLAKYI-SENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPA 788 (1463)
Q Consensus 723 ~a~lE~Ak~lW~~Ge~~~-------------Ai~~Lq~l-~~~~~~~~~~a~l~~l~g~wlaet~~e~~~~I~~~Y~~~a 788 (1463)
.++.|+..|+++.... ++-.+... .++........++++.+|+|++|++++++..|+++|+++|
T Consensus 2061 --~~s~aq~~~k~~~~~~~e~iL~~~~~kne~~~~~s~~~~~~~~lk~~~~~~~a~~g~Wlaetk~ens~~i~e~yl~~a 2138 (2806)
T KOG0892|consen 2061 --KFSLAQENLKHDIDKLSEAILWQRDEKNEAIISLSESLAKNNSLKEFPSDIYAVLGKWLAETKSENSALISEKYLEKA 2138 (2806)
T ss_pred --hhhhhhhhccchhhhhHHHHHHHHHhhhhHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHhhccchhhhHHHHHHHH
Confidence 2333333333332222 22222222 2222333456889999999999999999999999999999
Q ss_pred cccccccccch-hhHHHHhhhhHhHHHHHHHHHHHhHHHHhchHHHHHHHHHhhhhHHHHHHHHHHHhhcccCccchhhH
Q 000492 789 VSFSEDQRTTD-KKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSI 867 (1463)
Q Consensus 789 ~~~~~~~~~~~-~~~~~~~~~~~~~la~f~d~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~y~~ 867 (1463)
+.+++..+... ++.......+++++|+|+|.+|+.+++|+++.+|+.+++++++.+++++.+.++-.... +.
T Consensus 2139 ~~~ae~~d~e~~~~~~~~~s~a~~~~akysd~~~~~~~~~~~sse~et~~~l~k~~~~~~~~~~er~~q~~-------~~ 2211 (2806)
T KOG0892|consen 2139 VSLAEHYDNESCKALIYCQSFAQFCLAKYSDPDYQEDEERRSSSEFETLKDLQKLERSTVEASNEREEQMR-------KN 2211 (2806)
T ss_pred HHHhhhcchhHHHHHHhHHHHHHHHHHhccCchhhhHHHHHhHHHHhhHHHHHHHHHhhhhhhHHHHHHHH-------HH
Confidence 98887763322 22233446799999999999999999999999999999999998888886544432111 12
Q ss_pred HHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHhccCchHHHHHHHHHhhccccccc
Q 000492 868 KIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQSYK 947 (1463)
Q Consensus 868 ~~~~~~~~~~lD~~e~~~l~~~~~~fl~~Al~~Yl~sL~~~~~~~~~~~~RllsLW~~~~~~~~v~~~~~~~~~~vps~k 947 (1463)
+..+.++++.+|+++++++..+|.+||..|++||++|+..|++|+...++|+|+|||++++.++++..|.+.+.+||+||
T Consensus 2212 ~~~~~~rq~~lDe~~l~~l~~~r~~fL~~Alt~Yl~cl~~~~~~D~~~i~R~cslWfsns~~~evn~~mk~~i~~ipsyK 2291 (2806)
T KOG0892|consen 2212 HHVRVQRQLILDEEELLALSEDRSKFLTLALTNYLNCLSESDEYDVDLIFRCCSLWFSNSHLKEVNNSLKHEIQTVPSYK 2291 (2806)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccccHHHHHHHhhhhccccchHHHHHHHHHHhccCCcch
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHhhccCCCccccccccHHHHHHHHHHHHHHhCChhHHHHHHhhccccc-hhhhhcccchhhhhhhHHHHHHHH
Q 000492 948 FIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDR-IKDKQRSRNSFVVDMDKKLAAENL 1026 (1463)
Q Consensus 948 fl~~lpQL~sRl~~~~~~~~~~~f~~~L~~ll~~i~~~hP~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~i 1026 (1463)
|+||++||+|||+. .++..||+.|..|+.+++++||||++|+|+++.++.+ .++..++|.+ ++.+|..+++.+
T Consensus 2292 Fip~~yQlAaRl~~----~~~~~fq~~L~~Li~r~~~dhPyhtly~L~~L~~~~rd~e~~n~sr~s--l~~~rki~a~l~ 2365 (2806)
T KOG0892|consen 2292 FIPLVYQLAARLGN----SENNSFQKSLTSLIYRVGRDHPYHTLYQLLSLVNAVRDNEDENRSRGS--IDRDRKIAAELD 2365 (2806)
T ss_pred hHHHHHHHHHHhcc----ccCchHHHHHHHHHHHHhccCchHHHHHHHHHHhcCcChhhhhhcccc--cchhHHHHHHHh
Confidence 99999999999993 2467899999999999999999999999999998876 5666677775 788999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhhhccccccccc-ccchhhhh--hccccccccccccccCCCCCCcccCCCcCcc
Q 000492 1027 LEELSSYHGAIIRQMKQMVDVYIKLAELETRREDTNKR-IQLPREIR--CLRQLELVPVVTATVPIDCTCQYNEGSFPYF 1103 (1463)
Q Consensus 1027 l~~l~~~~~~~~~~~~~l~~~~~~la~~~~~~~~~~~~-~~~~~~l~--~l~~l~~~p~~t~~lp~~~~~~y~~~~~~~i 1103 (1463)
+.......+.++++++.+|++|+.||+.++.+.+++++ +.+|.... +..+++.+|+||+.+++++++.| |++|+|
T Consensus 2366 ~~~v~~~~~~~v~~v~~lc~~yI~lAnl~~~q~~t~~k~v~~p~~~~~~K~~nl~~v~~pT~ev~v~~s~~~--~~~p~i 2443 (2806)
T KOG0892|consen 2366 LCDVNQGAGNMVRQLECLCEAYISLANLKTSQNDTTSKLVRLPGYQWFLKQLNLEGVPPPTMNVKVNDSGDY--GNIPTV 2443 (2806)
T ss_pred hhHhhccchhHHHHHHHHHHHHHHHhcCcccccchhhhhhcCccccHHHhhhhccCCCCCCCCccccCCccc--CCCceE
Confidence 99988899999999999999999999987777666666 56666544 45567788889999998887654 568999
Q ss_pred ccccceEEEecCCCcceEEEEEeCCCceEeeeeecCCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEEcCC
Q 000492 1104 KGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTP 1183 (1463)
Q Consensus 1104 ~~f~~~~~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs~ 1183 (1463)
.+|.++|.+++|++.||+|+|+||||++|++|+|+|+||||||+.|+|+|+++|++|.++++|++|+|.||||+||||+|
T Consensus 2444 ~s~~~~v~~~~GinaPkiI~c~gSDG~~~kqLVK~gnDDLRQDAVMeQvF~~vN~lL~~~~et~krkL~irTYKVvPls~ 2523 (2806)
T KOG0892|consen 2444 VSFDDTVTFAGGINAPKVITCVGSDGKTYKQLVKGGNDDLRQDAVMEQVFGQVNTFLQNDRETRKRKLSIRTYKVIPLSP 2523 (2806)
T ss_pred EecccceeeecCccCCeEEEEEccCchhHHHHHhcccchHHHHHHHHHHHHHHHHHhhccHHHHhcccceeEEeeeecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchH-----hHHHHHHHHHhhhhhhHHHHHHHHcC
Q 000492 1184 SAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVK-----DKRIAFQEVCENFRPVLHYFFLERFL 1258 (1463)
Q Consensus 1184 ~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~k~~~f~~i~~~~~pvl~~~~~~~f~ 1258 (1463)
++|+||||.||+|+++||.... +|+|+||+|++|++.+||+.|++.+ +|+++|.+||++|.||||+||+|+|+
T Consensus 2524 ~sGvlEwv~~tiplgeyLv~~~--~gah~ry~p~d~s~~~crk~m~~~q~k~~E~r~k~y~~vc~n~~PvfryFflEkF~ 2601 (2806)
T KOG0892|consen 2524 KAGVLEWVTNTIPLGEYLVVES--GGAHKRYRPNDWSLSKCRKLMSEVQKKSLETRLKAYDKVCRNIRPVFRYFFLEKFP 2601 (2806)
T ss_pred ccceeecccCCeehhhhhcccC--CccccccCCCCCChHHHHHHHHHHhcccHHHHHHHHHHHHhhchHHHHHHHHHhcC
Confidence 9999999999999999997644 7899999999999999999998776 89999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCcccccchhhcccc
Q 000492 1259 QPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGV 1338 (1463)
Q Consensus 1259 ~~~~w~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG~ 1338 (1463)
+|.+||++|++||||+|+.|||||||||||||.+|||||..||+|||||||++||+|+.+|+||+|||||||+||||||+
T Consensus 2602 dP~~WFekrlaYTrsvA~sS~VGyILGLGDRH~qNILid~~taEviHIDlGiAFEQGkilptPE~VPFRLTRDiVdgmGI 2681 (2806)
T KOG0892|consen 2602 DPADWFEKRLAYTRSVAASSMVGYILGLGDRHGQNILIDQQTAEVIHIDLGIAFEQGKILPTPETVPFRLTRDIVDGMGI 2681 (2806)
T ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHhcccchhhhheeecccccceEEEeeeeehhcCCcCCCCCcccceeehhhccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhHHHhhhhcccccccCCCCCCcccccc-chhHHHHH
Q 000492 1339 TGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEG-NKDAERAL 1417 (1463)
Q Consensus 1339 ~g~eG~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-n~~a~~~l 1417 (1463)
+||||+||+|||.||.+||++++.+++|||+|+||||++|.++|.|+..+|++ ++..+.+.++....... +..|.|++
T Consensus 2682 tGveGvFrRccE~t~~vlR~~~~~lltileVl~yDPLf~W~msplK~~~~q~~-e~~e~~n~~~~~~~~~~nd~~a~r~l 2760 (2806)
T KOG0892|consen 2682 TGVEGVFRRCCEFTLEVLRREKESLLTILEVLLYDPLFSWLMSPLKALKKQKE-EDEENFNLSGNITEDASNDRNAVRAL 2760 (2806)
T ss_pred cCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcchHHHhhcHHHHHHHHHh-hcchhcccccchhhhhccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999886 33333444333333333 57899999
Q ss_pred HHHHhhcCCCCCCCccCHHHHHHHHHHHhcCchhhhhhCcccccCC
Q 000492 1418 IRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1463 (1463)
Q Consensus 1418 ~rv~~kL~g~~~~~~lsv~~qV~~LI~~Atd~~nL~~m~~gW~Pwl 1463 (1463)
.|+++||.|++.|..+||++||++||||||||+|||+|||||.||+
T Consensus 2761 ~r~q~kl~g~e~g~~~sVe~qv~~LIqqA~dpsnLs~~fpGW~a~~ 2806 (2806)
T KOG0892|consen 2761 MRAQRKLDGVEQGTMLSVEAQVQELIQQATDPSNLSLMFPGWSAFQ 2806 (2806)
T ss_pred HHHHHHhhhhhccccccHHHHHHHHHHHhcCchhhhhhcCCCcCcC
Confidence 9999999999999999999999999999999999999999999996
No 2
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3e-155 Score=1498.04 Aligned_cols=1217 Identities=26% Similarity=0.400 Sum_probs=915.3
Q ss_pred hhHHHHHHHHHHhhcCCCcccHHHHHHHHHhhhCCCCCcEEEEecCCCccccccccCCCCCCCCCccceeccCccchHHH
Q 000492 11 HDIVHAVWTLVHMCCSDDASSIRAWVSDFISRVGIGDPHCVVFHLPRDSIYMHACRPINHGSGSATEFNFHLDAGISEEL 90 (1463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (1463)
+++.+.+=.|..=|-... +.+..+.|+||+.+|.-||.|--|+--+. ++.. -...+--+.|.-|-. .
T Consensus 1080 ~~l~ql~~~Ll~gc~k~~-~~~~~~~akcLg~lgaidp~~~~~k~q~~---------i~~~--~~~~~~~~~~~~i~~-~ 1146 (2382)
T KOG0890|consen 1080 EDLSQLLTVLLDGCQKKT-SQLEELCAKCLGELGAIDPSCHRFKEQET---------IPSI--LQVLPIECSDLPIKF-I 1146 (2382)
T ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccCchhhhhhcccc---------cchh--hhccccccCchhhhh-H
Confidence 455566666666555544 78888999999999999999877765311 1111 122233333333334 4
Q ss_pred HHHHHHHHHHhhhcCcchhhchHHHHHHHHhcccccchhhhchhHHHHHHHHHhhccCcchhhhhhhhhhhhhh-hcCCC
Q 000492 91 LIAVLKILKKYLMDDSVQIVDMTSQTLRGILSTEKGQRAVMSFDSYERSLLEVHSKGVNVELVETFLLDLERKF-KANGI 169 (1463)
Q Consensus 91 ~~~il~~l~~~l~~~~~~~~~~a~~~L~~ils~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 169 (1463)
.+....++.-+++..+..-.+.++.+.+.++. ..|..-....++-.--+|+.+..-.-..+ .|.+++.+.. .....
T Consensus 1147 ~~~~~~l~~~~~~~~~~~~q~~~~~~~qe~l~-~~~~~n~e~~~~~~~elW~~Fp~~~k~~~--~P~L~s~Y~sq~~~p~ 1223 (2382)
T KOG0890|consen 1147 DFAWDTLVKAFLCEPDQLKQDVVAYAIQEVLV-LGGSSNIEPLDRGMCELWERFPNEVKEEM--EPTLTSRYASQKPEPS 1223 (2382)
T ss_pred HHHHHHHHHHHhcCcChhhhhHHHHHHHHHHH-HhccccCccCCccHHHHHHHhHHHHHHHH--hhcccchhccCCCCCC
Confidence 56677888889999999999999999988887 22222112222222223332211111111 2233322220 00001
Q ss_pred CCCCCcccccCCCCHHhhHHHHHHHhhcc---C-CchhhhhcHHHHhhcHhHHHHHhHHHHHHHhcCC--CcchhHHHHH
Q 000492 170 SPEKSTVWETDGKTFETWICPLTYSLIGC---C-NDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGSK--NVDVDLQKLI 243 (1463)
Q Consensus 170 ~~~~~~~w~~~~~s~~eWir~ls~~Ll~~---~-~~~~Lr~~~~l~~~~~~~A~~LfP~~v~~~~~e~--d~~~~~~~~l 243 (1463)
.-....++... .+|.+|+.+|+..|+.. + .++++.+|+.+...+-.++.+|+||++++|+... +...++.+++
T Consensus 1224 ~~~k~Piy~~~-lg~~eW~~~w~~~Li~ka~~s~~~~ifs~cs~~~k~D~~~t~fLlP~ill~vll~~~~e~~~~V~~ei 1302 (2382)
T KOG0890|consen 1224 VGEKKPIYKSS-LGYREWLSRWSLKLIAKAESSEASPLFSLCSIIVKDDFKVTRFLLPYILLDVLLVCEEEDRNSVTEEI 1302 (2382)
T ss_pred ccccccccccc-ccHHHHHHHHHHHHHHhccccccchHHHHHHHHHhccchhHHHHHHHHHHHHHHhccHhhHHHHHHHH
Confidence 11223333332 23999999999999954 3 3589999999999999999999999999985432 2244555555
Q ss_pred HHHHHhhhhhcc-----hhhHHHHHHHHHHHHHHHHhh------HhhhccCCCCCcccccccccCCC---CCCCccchhh
Q 000492 244 SSQVQKYIFTES-----NKLIKSIQVFLNALNELRLCH------VMERSSSVPPKRESSKYVKHSGS---SAKPRSTSAK 309 (1463)
Q Consensus 244 s~~~~~~~~~~~-----~~~~~siq~~l~~~~~Lr~~~------~ae~~~~~p~~~~~~~~~~~~~~---~~~s~~~~~~ 309 (1463)
-.++++...+.- ....-.+|++|..++||..+- ++++... +...+| +.-+..+.
T Consensus 1303 l~vl~~~~~~t~ns~~~~~d~~~~~~VF~~ld~l~qw~r~~~q~~~~~k~~----------~sk~~R~~~~~~~~Tt~-- 1370 (2382)
T KOG0890|consen 1303 LSVLDEAATNTINSRGTASDRLCVQFVFYVLDYLYQWARHKKQELAEKKKI----------WSKVNRFWKSIMSWTTT-- 1370 (2382)
T ss_pred HHHHhcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------HHHhhhhheeeeccccC--
Confidence 556665432211 112567999999999986652 1221110 111112 00000000
Q ss_pred hhhhhhhcccccccccccccccccCHHHHHHHHHhhCchhhhhhhhHhhhhhhhccccCCCCCCCcCCCcchHHHHHHHH
Q 000492 310 ARDVVATSNATMTTSWDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSA 389 (1463)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~wL~Id~~~lA~aA~~C~AyatALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~I 389 (1463)
-.+++++ ..|..-|+-.++|.|..+|++|++|+||+|.+... +.. .+......-+|+.+
T Consensus 1371 ~~~~~~v----------~~fL~~iP~~tLa~aSfrc~~y~RalmylEs~~~~----------ek~-~~~~e~l~fllq~l 1429 (2382)
T KOG0890|consen 1371 GEDIEGV----------QSFLDLIPSDTLARASFRCKAYARALMYLESHRST----------EKE-KETEEALYFLLQNL 1429 (2382)
T ss_pred CCchhhh----------HHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhccc----------cch-hHHHHHHHHHHHHH
Confidence 0111111 12455788899999999999999999999985110 110 12223445567779
Q ss_pred HhhCCCchhhhhhhc----ccchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhh
Q 000492 390 VTQINEPDSLYGIIQ----SHKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENE 465 (1463)
Q Consensus 390 y~~IdePD~~yGi~~----~~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~ 465 (1463)
|..|+||||+.|+.. .+++..+|..+|..|+|.+|.+|||..++.+ |+
T Consensus 1430 Y~~i~dpDgV~Gv~~~r~a~~sl~~qil~~e~~g~~~da~~Cye~~~q~~-----------------p~----------- 1481 (2382)
T KOG0890|consen 1430 YGSIHDPDGVEGVSARRFADPSLYQQILEHEASGNWADAAACYERLIQKD-----------------PD----------- 1481 (2382)
T ss_pred HHhcCCcchhhhHHHHhhcCccHHHHHHHHHhhccHHHHHHHHHHhhcCC-----------------Cc-----------
Confidence 999999999999976 4689999999999999999999999999964 33
Q ss_pred hhccchhhHHHHHHHhhchhhHHHHhhhccccccCCCCCCcchhHHHHHHHhccCCCCCCccccCCCCCCCCCcccchhh
Q 000492 466 MMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFH 545 (1463)
Q Consensus 466 ~~~~~~~~GlmrcL~~LG~~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrLg~WD~~~~~~~~~~~~~~~~~~~~f~ 545 (1463)
+..++.|+++|+.+.|+..+.-...+|+..+.. ++-.++..+..+||||+++||.++.+.. ..+...|.
T Consensus 1482 --~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~s--e~~~~~~s~~~eaaW~l~qwD~~e~~l~-------~~n~e~w~ 1550 (2382)
T KOG0890|consen 1482 --KEKHHSGVLKSMLAIQHLSTEILHLDGLIINRS--EEVDELNSLGVEAAWRLSQWDLLESYLS-------DRNIEYWS 1550 (2382)
T ss_pred --cccchhhHHHhhhcccchhHHHhhhcchhhccC--HHHHHHHHHHHHHHhhhcchhhhhhhhh-------cccccchh
Confidence 234688999999999999888778888776642 4456788889999999999999987642 22344555
Q ss_pred hh-HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHHhHHHHHHHhhhhccCCcccccccc
Q 000492 546 EN-LHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEE-STEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEK 623 (1463)
Q Consensus 546 ~~-L~~~L~al~~~d~~~~~~~i~~aR~~l~~~Lsa~s~E-Sy~~~Y~~lvrLq~L~ELe~i~~l~~~~~~~~~~~~~~~ 623 (1463)
.. +++++.+..++|.-.+.+.|+.+|..+++++++++.| ||.++|+.+++||++.||+..++...+.+++
T Consensus 1551 ~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~-------- 1622 (2382)
T KOG0890|consen 1551 VESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYD-------- 1622 (2382)
T ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcc--------
Confidence 55 8899999999999999999999999999999999988 9999999999999999999998865443321
Q ss_pred ccccCCCCCcchhhhhHHHHHHHHHHHhhccchhhhhhhHHHHHHHHHhhc---cchHHHHHHHHHHHHHHhcCChhHHH
Q 000492 624 QKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILS---CKDFTMQHLLESASTLRKGFRLSQAA 700 (1463)
Q Consensus 624 ~~~~~~~~~~~~~~~~~l~~~W~~rl~~~q~~~~~~EpiL~~R~~vl~il~---~~~~~~~~wl~~A~laRkag~~~~A~ 700 (1463)
. +. ..-...|..|++++|+.+...||||++|+.++.... .++.++++|+++|++||++|+++.|+
T Consensus 1623 -~---~s--------~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1623 -E---DS--------ANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred -c---cc--------cccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 0 10 111268999999999999999999999999998743 46789999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhccCC---------Cc-----hhhHHHHHh
Q 000492 701 AALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESN---------EE-----APDVYRLVG 766 (1463)
Q Consensus 701 ~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~~~~~---------~~-----~a~l~~l~g 766 (1463)
++|..+... + .| -+.+|.||++|.+|+...|+..||..+.++... .. ...+..++|
T Consensus 1691 nall~A~e~------r-~~---~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~ 1760 (2382)
T KOG0890|consen 1691 NALLNAKES------R-LP---EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKIT 1760 (2382)
T ss_pred HHHHhhhhc------c-cc---hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHH
Confidence 999876543 1 11 346999999999999999999999887543222 00 135678999
Q ss_pred HHHHHhhcCChHHHHHhhhchhcccccccccchhhHHHHhhhhHhHHHHHHHHHHHhHHHHhchHHHHHHHHHhhhhHHH
Q 000492 767 KWLAESRSSNSRIILENYLKPAVSFSEDQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIE 846 (1463)
Q Consensus 767 ~wlaet~~e~~~~I~~~Y~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~f~d~~~~~~~~~~~~~~~~~~~~~~~~~~~e 846 (1463)
+|+.++....+.+|++.|.+ |..+. ..+.+.||++|+|+|..+.... .
T Consensus 1761 ~~~~es~n~~s~~ilk~Y~~-~~ail-----------~ewe~~hy~l~~yy~kll~~~~----~---------------- 1808 (2382)
T KOG0890|consen 1761 KYLEESGNFESKDILKYYHD-AKAIL-----------PEWEDKHYHLGKYYDKLLEDYK----S---------------- 1808 (2382)
T ss_pred HHHHHhcchhHHHHHHHHHH-HHHHc-----------ccccCceeeHHHHHHHHhhhhh----c----------------
Confidence 99999999999999999987 43221 1246789999999998864320 0
Q ss_pred HHHHHHHHhhcccCccchhhHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHhcc
Q 000492 847 LEALIKRLKSSTKGEKTDYSIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSL 926 (1463)
Q Consensus 847 l~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~lD~~e~~~l~~~~~~fl~~Al~~Yl~sL~~~~~~~~~~~~RllsLW~~~ 926 (1463)
.+.+ ++ +....|+. ++-+|.+++.+|+++.++++||++||||++
T Consensus 1809 -----------~~~E------------~~------------g~~~~~l~-~~~~~~~sl~yg~~~iyqsmPRllTLWLD~ 1852 (2382)
T KOG0890|consen 1809 -----------NKME------------KS------------GRVLSLLK-AIYFFGRALYYGNQHLYQSMPRLLTLWLDI 1852 (2382)
T ss_pred -----------cccc------------cc------------ccHHHHHH-HHHHHHHHHHhcchhHHHhhhHHHHHHHhh
Confidence 0001 00 11224778 999999999999999999999999999997
Q ss_pred Cch---------H--------HHHHHHHHhhccccccchhhhhHHHhhccCCCccccccccHHHHHHHHHHHHHHhCChh
Q 000492 927 SSR---------Q--------NVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYH 989 (1463)
Q Consensus 927 ~~~---------~--------~v~~~~~~~~~~vps~kfl~~lpQL~sRl~~~~~~~~~~~f~~~L~~ll~~i~~~hP~~ 989 (1463)
|.. . .++..+.+++..+|+|.|+++++||+|||||+++ .+..+|.++|.++..+||||
T Consensus 1853 ~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y~f~ta~sQLlSRicH~~~-----dV~~vl~~II~~l~~~YPqq 1927 (2382)
T KOG0890|consen 1853 GTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPTYQFYTAYSQLLSRICHPNQ-----DVARVLKHIIAKLVLAYPQQ 1927 (2382)
T ss_pred cchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHhCchH
Confidence 421 1 2455677899999999999999999999999864 34479999999999999999
Q ss_pred HHHHHHhhccccchhhhhcccchhhhhhhHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 000492 990 TIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELS---SYHGAIIRQMKQMVDVYIKLAELETRREDTNKRIQ 1066 (1463)
Q Consensus 990 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~il~~l~---~~~~~~~~~~~~l~~~~~~la~~~~~~~~~~~~~~ 1066 (1463)
+||++.++.+|+..+ |....+.||.+.. .....++.+...+.+.+.++|+.+... +.+..+
T Consensus 1928 ~lW~~~a~~kS~~p~--------------R~~R~keIL~k~~~~~~~~~~l~~da~~lTe~L~~lcn~~v~~--ss~~~s 1991 (2382)
T KOG0890|consen 1928 TLWQSAALSKSNVPS--------------RVERCKEILTKSRRQKPDYKKLLSDAYDLTEKLTNLCNKKVNS--SSKVLS 1991 (2382)
T ss_pred HHHHHHHHHhcccHH--------------HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhcCCCCc--cccccc
Confidence 999999998875432 2234445666432 335567778888999999999865432 345566
Q ss_pred chhhhhhcccc-----cccccc---ccccCCCCCC--ccc-----CCCcCccccccceEEEecCCCcceEEEEEeCCCce
Q 000492 1067 LPREIRCLRQL-----ELVPVV---TATVPIDCTC--QYN-----EGSFPYFKGLAESVMVMNGINAPKVVECFGSDGHK 1131 (1463)
Q Consensus 1067 ~~~~l~~l~~l-----~~~p~~---t~~lp~~~~~--~y~-----~~~~~~i~~f~~~~~v~~s~~~Pk~i~~~gsdG~~ 1131 (1463)
+...|+++... .++|+. ..++|+.+.. .+. ++..|+|.+|.+.|+|++|.|+||+|+++||||+.
T Consensus 1992 l~t~F~kl~~~~~~s~iliP~~~~M~ptlP~~~~~~~~h~~~~~f~~~~~~IsgF~d~V~Il~SLqKPKkI~l~GsDGk~ 2071 (2382)
T KOG0890|consen 1992 LKTDFRKLVMNRRFSDILIPLQSIMDPTLPLIDNNHATHSPFPPFQSHLPYISGFSDEVKILNSLQKPKKIKLRGSDGKI 2071 (2382)
T ss_pred HHHHHHHhccccChhhhhhhHhhhcccccccccCcccccCCCCCCCCcchhhhcchHHHHHHHhccCCeEEEEEcCCCCE
Confidence 77777744321 345553 2344443321 111 12345799999999999999999999999999999
Q ss_pred EeeeeecCCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCC
Q 000492 1132 YRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAH 1211 (1463)
Q Consensus 1132 y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~tl~~il~~~~~~~~~~ 1211 (1463)
|.+|||+ +||||+|.|+|+|..+||.+|+||.|+|||+|+||||+||||+++|||||||||+.+|++|+.+.|...|.
T Consensus 2072 Y~~lCKp-KDDLRKD~RlMeFn~lin~lL~KD~eSRrR~L~IRTYaViPLneeCGiIEWv~nt~slR~IL~klY~~rg~- 2149 (2382)
T KOG0890|consen 2072 YPFLCKP-KDDLRKDARLMEFNELINKLLRKDQESRRRKLYIRTYAVIPLNEECGIIEWVPNTASLREILDKLYMTRGK- 2149 (2382)
T ss_pred eEEEeCc-hhhhhhhhHHHHHHHHHHHHHhhCHHHhhhcceeeEEEEeecCCccceEEecCCcchHHHHHHHHHHhccc-
Confidence 9999997 79999999999999999999999999999999999999999999999999999999999999887733321
Q ss_pred CCCCCCcchhHHHHhhhc----chHhHHHHHH-HHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheecc
Q 000492 1212 GRYGIGDWSFLKCREHMS----NVKDKRIAFQ-EVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGL 1286 (1463)
Q Consensus 1212 ~~~~~~~~~~~~~r~~~~----~~~~k~~~f~-~i~~~~~pvl~~~~~~~f~~~~~w~~~R~~ft~S~A~~S~vgyILGL 1286 (1463)
+.++ .+++..+- ...++.++|. ++++++||||++||+++||+|..||..|.+|+||+||||||||||||
T Consensus 2150 --~~~~----~~l~~~~~~~~~~~~~~~~~F~~~~lpkfPPVFheWFl~~FPeP~sW~~SR~~Y~rTtAVMSmVGyIlGL 2223 (2382)
T KOG0890|consen 2150 --WMIK----KQLRSVHLKKQMAKEEKGKVFREKLLPKFPPVFHEWFLESFPEPGSWFASRNNYARTTAVMSMVGYILGL 2223 (2382)
T ss_pred --cchh----hHHHHhcCcHhhcccchhhhhHHhhcccCCcHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2111 13333221 2345778885 68999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCcccccchhhccccccccchhHHHHHHHHHHHhcChHHHHHH
Q 000492 1287 GDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTI 1366 (1463)
Q Consensus 1287 GDRH~~NILld~~tG~vvhIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~F~~~c~~t~~~LR~~~~~l~~i 1366 (1463)
||||++|||||..||++||+||.|.|++|..|++||.||||||+||+|||||+|+||.||++||.||++||+|++.||+|
T Consensus 2224 GDRHgENILFDs~TGdcVHVDFnCLFnKGetlevPEiVPFRLT~NMidamGp~G~EG~Frk~cEiTLrLlR~n~e~LMSi 2303 (2382)
T KOG0890|consen 2224 GDRHGENILFDSTTGDCVHVDFNCLFNKGETLEVPELVPFRLTQNMIDAMGPLGLEGSFRKVCEITLRLLRKNRETLMSI 2303 (2382)
T ss_pred ccccccceeeecCCCcEEEEeecccccCCcccCCCCccceecchhHHhhcCCcccchhHHHHHHHHHHHHHhcchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCcccccChhHHHhhhhcccccccCCCCCCccccccchhHHHHHHHHHhhcCCCC--CCCccCHHHHHHHHHH
Q 000492 1367 VEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYE--GGEMRSVHGQVQQLIQ 1444 (1463)
Q Consensus 1367 Le~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~rv~~kL~g~~--~~~~lsv~~qV~~LI~ 1444 (1463)
|+.|+||||+.|........ ....|.+ .+++.+|++|+.|.. +|.++||+|||+.||+
T Consensus 2304 L~tF~~DPlvew~~~~k~~s-------------------~~~i~e~-~~~i~~i~~rlqG~~~~~glPLSveGq~~~LI~ 2363 (2382)
T KOG0890|consen 2304 LETFVYDPLVEWNRPSKGRS-------------------PKKINED-RLVIGRIRGRLQGAMKVDGLPLSVEGQASSLIE 2363 (2382)
T ss_pred HHHHHhCchhhccCcccCCC-------------------cCcccch-HHHHhHHHHHHhccCcCCCCccchhhHHHHHHH
Confidence 99999999999975321100 0011112 568999999999955 6788999999999999
Q ss_pred HhcCchhhhhhCcccccCC
Q 000492 1445 DAIDPERFCLMFPGWGAWL 1463 (1463)
Q Consensus 1445 ~Atd~~nL~~m~~gW~Pwl 1463 (1463)
+|||++|||+||.||+|||
T Consensus 2364 eATseenL~~MYIGW~p~l 2382 (2382)
T KOG0890|consen 2364 EATSEENLSEMYIGWMPFL 2382 (2382)
T ss_pred HhcCHHHHHHHHhhhhccC
Confidence 9999999999999999997
No 3
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=100.00 E-value=6.7e-104 Score=1055.12 Aligned_cols=1086 Identities=25% Similarity=0.385 Sum_probs=817.5
Q ss_pred CHHhhHHHHHHHhhccCCchhhhhcHHHHhhcHhHHHHHhHHHHHHHhcCCCcchhHHHHHHHHHHhhhhhcchhhHHHH
Q 000492 183 TFETWICPLTYSLIGCCNDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGSKNVDVDLQKLISSQVQKYIFTESNKLIKSI 262 (1463)
Q Consensus 183 s~~eWir~ls~~Ll~~~~~~~Lr~~~~l~~~~~~~A~~LfP~~v~~~~~e~d~~~~~~~~ls~~~~~~~~~~~~~~~~si 262 (1463)
.|.+|+++..+.++++++++++|+|..++..+.++|+.+||++|.+||.+.+ .+.+..+...+....... ..++.+
T Consensus 1129 ~~~e~~~~~~i~~lk~~~s~~lr~~~~l~~~~~~l~r~~f~~~~~s~w~e~~--~~~q~~l~~~le~~~~~~--~i~e~~ 1204 (2341)
T KOG0891|consen 1129 DWQEWIRRLSIELLKESPSHALRACSSLAQAYYPLARDLFNAAFVSCWTELD--SSYQNDLIKSLEIALSSP--DIPEII 1204 (2341)
T ss_pred cccchhhhhhHHHHHhcchhhHHHHHhhhhhccccchhhhhHHHHHHhhhcc--cchhhhhhhhHHHHHhCC--ccHHHH
Confidence 3999999999999999999999999999999999999999999999999874 556666666666533222 223777
Q ss_pred HHHHHHHHHHHHhhHhhhccCCCCCcccccccccCCCCCCCccchhhhhhhhhhcccccccccccccccccCHHHHHHHH
Q 000492 263 QVFLNALNELRLCHVMERSSSVPPKRESSKYVKHSGSSAKPRSTSAKARDVVATSNATMTTSWDKVYWLSVDYLRVAKSA 342 (1463)
Q Consensus 263 q~~l~~~~~Lr~~~~ae~~~~~p~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~wL~Id~~~lA~aA 342 (1463)
|+.+|. +|||+| + + + .|||...+++..|
T Consensus 1205 q~l~nl---------~ef~eh-----~-~-----------------------------------~--plpi~~~~L~~~~ 1232 (2341)
T KOG0891|consen 1205 QTLLNL---------AEFMEH-----D-D-----------------------------------K--PLPIPIKTLGLYA 1232 (2341)
T ss_pred HhhhhH---------HHHHHh-----c-c-----------------------------------c--CCCcchhhHHHHH
Confidence 777775 778866 1 1 1 3777888999999
Q ss_pred HhhCchhhhhhhhHhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCCchhhhhhhcc----cchhhHHHHHHhh
Q 000492 343 VICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS----HKLSSQIVTLEHE 418 (1463)
Q Consensus 343 ~~C~AyatALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~----~~l~~~i~~yE~e 418 (1463)
..|++|++||+|+|+++... ...++++.|+.|.+.++.+|.+.|+... ..+..+..|||+.
T Consensus 1233 ~~c~a~~~~l~y~el~~~~~---------------~~~~~i~sl~~~~~~~q~~~~a~~i~~~a~~~~~l~~~e~w~e~l 1297 (2341)
T KOG0891|consen 1233 EKCRAYAKALHYKELEFLKE---------------PSPDTIESLISINNKLQQREAAIGVLKYAQQHSELQLKETWYEKL 1297 (2341)
T ss_pred HHHHHHHHHHHHHHHHhhhc---------------cchhHHHHHHhhcccchhHHHhccHHHHHHhHHHHHHhhhccccc
Confidence 99999999999999987542 3478899999999999999999999762 3577888999999
Q ss_pred CCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhchhhHHHHhhhccccc
Q 000492 419 GNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSW 498 (1463)
Q Consensus 419 g~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~~~~gl~~~ 498 (1463)
.+|++||.+|+.....+.+ ..+...|.|+|+.++|.|+.++......+..
T Consensus 1298 ~~~~d~l~a~~~~~~~~~~------------------------------~~e~~~g~~~~~~~lg~w~~l~~~~~~~~~~ 1347 (2341)
T KOG0891|consen 1298 HRWEDALAAYELREKAGDS------------------------------SFELRMGKMRCLEALGDWDELSQLASEKWEV 1347 (2341)
T ss_pred ccchhHhhhhhcccchhhh------------------------------hHHHHhhhhhhhhhhhhHHHHhhhhcccCCC
Confidence 9999999999997663211 1124679999999999999987443332222
Q ss_pred cCCCCCCcchhHHHHHHHhccCCCCCCccccCCCCCCCCCcccchhhhhHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh
Q 000492 499 KGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLSV 578 (1463)
Q Consensus 499 ~~~~~~~~~~~~~~~eaAWrLg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~~L~al~~~d~~~~~~~i~~aR~~l~~~L 578 (1463)
.. .+.+..+++.+..+||.+++||.+..| .+.++..+++..+|. +.+++|.++++.+...+..+|+.++.++
T Consensus 1348 ~~-~~~~~~~ap~a~~~~~~~~~w~~~~~~--~s~~~~~~~~~~~~~-----a~~a~~~~~~~~~~~~~~~~~dll~~e~ 1419 (2341)
T KOG0891|consen 1348 AG-QEAKHKMAPLAAAAAWGLGQWDTMAEY--VSVMSEDSQDKAFFR-----AILALHRDEFEKAVKLIERARDLLDTEL 1419 (2341)
T ss_pred cc-hhHHHHHHHHHHHhhhccccchhhhhh--cccccccchhhHHHH-----HHHhhhhhHHHHHHHhcccHHHHHHHHH
Confidence 21 234556899999999999999997655 334444556655554 4679999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHHHHHHHHHHhhccchhh
Q 000492 579 ACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNL 658 (1463)
Q Consensus 579 sa~s~ESy~~~Y~~lvrLq~L~ELe~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~~q~~~~~ 658 (1463)
+++..|||+++|..+++.||+.|+|++++ |+..+ ++...+...|.+++.+|+...+.
T Consensus 1420 ~~~~~Es~sr~y~~~~~~~~~~e~E~~~~--~k~~~---------------------~r~~~i~~~~~~~l~~~q~~~~~ 1476 (2341)
T KOG0891|consen 1420 TAMAGESYNRAYGVMVRAQMLAELEEIIE--YKKLP---------------------ERRPIIAKTWWKRLQGCQKNVDD 1476 (2341)
T ss_pred HHHHhhHHhhchhhhhhhhhhhhHHHHHH--hhccc---------------------chhHHHHHHHHhhHHHhhccHHH
Confidence 99999999999999999999999999988 44321 23456788999999999999999
Q ss_pred hhhhHHHHHHHHHhhccchHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCC-----CCCCCchhhhhHhHHHHHHHH
Q 000492 659 LEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTG-----PGDQCSTVYWLGRLEEAKLLR 733 (1463)
Q Consensus 659 ~EpiL~~R~~vl~il~~~~~~~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~-----~~~q~~~~~~~a~lE~Ak~lW 733 (1463)
|+.++.+|..++.+ .+...+|++++.+|||+|+..++.+.+..+..-... +.....|.+. +...+++|
T Consensus 1477 wq~~lr~~~~v~~p----~~~~~~~ik~a~~cr~s~~~~l~~~~l~~~L~~~~~~~~~~~~~~~~P~~v---~a~~~~~~ 1549 (2341)
T KOG0891|consen 1477 WQRILRVRSLVLSP----QEDMEMWIKFASLCRKSGRLALARKLLNELLERDPSSDLPLPLKARLPQVV---YAYLKYLW 1549 (2341)
T ss_pred HHHHHHHhhhccCC----CcchHHHHHHHHHhHHhHHHHHHHHHHHHHHhcCccccccccccccChHHH---HHHHhHHH
Confidence 99999999888653 557899999999999999999999998775422111 1112233344 45799999
Q ss_pred HcCChHHHHHHHHHHHhhccCCCchhhHHHHHhHHHHHhhcCChHHHHHhhhchhcccccccccchhhHHHHhhhhHhHH
Q 000492 734 AQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSEDQRTTDKKSIERQCQTHFHL 813 (1463)
Q Consensus 734 ~~Ge~~~Ai~~Lq~l~~~~~~~~~~a~l~~l~g~wlaet~~e~~~~I~~~Y~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 813 (1463)
..+....|++.++...... .++.++.. +... .+. . ..+ .+-+..+
T Consensus 1550 ~~~~~~~~~~~~~~~~s~l----------------~~d~~~~~-~~~~----------~~~-~---~~~----~~~~~~l 1594 (2341)
T KOG0891|consen 1550 ATDSKDEAINTLQEFTSTL----------------NSDLGSDP-DELL----------SEP-T---EAE----KQEYTKL 1594 (2341)
T ss_pred hhccchHHHHHhHHHHHHH----------------HhhcCCCc-hhhh----------hcc-c---chh----hhHHHHH
Confidence 9999999999876544321 12222211 1000 000 0 000 0000000
Q ss_pred HHHHHHHHHhHHHHhchHHHHHHHHHhhhhHHHHHHHHHHHhhcccCccchhhHHHHHHHHHhhhcHHHHHHh-------
Q 000492 814 AHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQKQLAMDREEAQKL------- 886 (1463)
Q Consensus 814 a~f~d~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~lD~~e~~~l------- 886 (1463)
..++ +++.++|+..... .+...-+..++..|..++..++.||+++-.-....+. +...++.+
T Consensus 1595 ------~a~~---~l~~~~w~~~~~~-s~~~~~~~~~L~~y~~at~~d~~~ykawh~~a~a~f~-~V~~l~~~~~~~~~~ 1663 (2341)
T KOG0891|consen 1595 ------LARC---FLKLGEWQQLLQD-SWRTSALDGILQSYLLATQFDRGWYKAWHQWALANFE-VVQMLKQVTKAKYAP 1663 (2341)
T ss_pred ------HHHH---HHhhccccccccC-CccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-HHHhhhhhhccccCC
Confidence 1111 2456777765432 2444556667778888889999999987211110000 00000000
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHhccCchHHHHHHHHHhhccccccchhh
Q 000492 887 ----------------LDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQSYKFIP 950 (1463)
Q Consensus 887 ----------------~~~~~~fl~~Al~~Yl~sL~~~~~~~~~~~~RllsLW~~~~~~~~v~~~~~~~~~~vps~kfl~ 950 (1463)
......|+.+|+++|++++..+.+...+++.|+++|||.+|++++|..++..++..+|.+.|++
T Consensus 1664 ~~~~~~~~~~~~~~~~~~~~~~~~v~avk~ff~~~~~~~~s~lqdtlrl~~L~f~~g~~~~v~q~i~~~~~~~~i~~wl~ 1743 (2341)
T KOG0891|consen 1664 GANIWNMPDYLGSNSDLMLIHHYAVPAVKGFFRSISLSPGSSLQDTLRLLTLWFDFGDNKDVYQALLEGINLIPIDTWLE 1743 (2341)
T ss_pred ccccccchhhccCcCCccchHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCCCchHHHHHHhhhhHhhHHHHHH
Confidence 0112459999999999999999998899999999999999999999999999999999999999
Q ss_pred hhHHHhhccCCCccccccccHHHHHHHHHHHHHHhCChhHHHHHHhhccccch---------hhhhcccchhhhhhhHHH
Q 000492 951 LVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRI---------KDKQRSRNSFVVDMDKKL 1021 (1463)
Q Consensus 951 ~lpQL~sRl~~~~~~~~~~~f~~~L~~ll~~i~~~hP~~~l~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 1021 (1463)
++|||++||..+. ....+.+..++..+++.||+++.|++.+..++... .++.+.+...++.++..+
T Consensus 1744 ~ipqLiari~~~~-----~~~~~l~~~ll~dig~~~pqA~iy~ltvas~s~~~~r~~~a~~ile~m~~~~~~Lv~~a~lv 1818 (2341)
T KOG0891|consen 1744 VIPQLIARIHTPD-----QLVVQLVLQLLSDIGRAHPQALVYPLTVASKSKSVARQKAALSILEKMREHSPTLVRQARLV 1818 (2341)
T ss_pred hHHHHHHHHhccc-----hHHHHHHHHHHHHhhhcchhhhhHHHHHHHhcchHHHHHhHHHHHHHHHHhhHhhhhhhhhh
Confidence 9999999999763 45678999999999999999999999876655432 233445555566666655
Q ss_pred HHHHH-------------HHHHH-hhHHHHHHHHHHHHHHHHHHhhhhcc-----cc-----------------------
Q 000492 1022 AAENL-------------LEELS-SYHGAIIRQMKQMVDVYIKLAELETR-----RE----------------------- 1059 (1463)
Q Consensus 1022 ~a~~i-------------l~~l~-~~~~~~~~~~~~l~~~~~~la~~~~~-----~~----------------------- 1059 (1463)
.-+.| +++.+ .+++ .++++.|++.+.++.++-.. ++
T Consensus 1819 s~elir~a~lwhe~w~e~ldeAsr~yf~--~~nv~~m~~~l~p~~~~l~~~~~t~~e~sFqqt~g~dl~ea~~~~~~~~~ 1896 (2341)
T KOG0891|consen 1819 SEELIRVAILWHEQWHEGLEEASRLYFS--DHNVEGMFAVLRPLHEMLERGPQTLKEHSFQQTYGRDLKEAYEWVQKFEQ 1896 (2341)
T ss_pred HHHHHHHHhhhHhhhhhccHHHHHHHhh--HhhHHHHHHHHhHHHHHhhcCCcchhhhhhHHhhChhhHHHHHHHHHHHh
Confidence 55544 22222 2344 47788888888777654211 11
Q ss_pred -----ccccccc--------chhhhhhcccccccccc-----ccccCCCCCCcccCCC-cCccccccceEEEecCCCcce
Q 000492 1060 -----DTNKRIQ--------LPREIRCLRQLELVPVV-----TATVPIDCTCQYNEGS-FPYFKGLAESVMVMNGINAPK 1120 (1463)
Q Consensus 1060 -----~~~~~~~--------~~~~l~~l~~l~~~p~~-----t~~lp~~~~~~y~~~~-~~~i~~f~~~~~v~~s~~~Pk 1120 (1463)
+.++.|. +.++++.++.++.+.+. ...+++..+++|.++. +..|.+|.+++.|+.|+++|+
T Consensus 1897 ~~~~~dL~qawdly~~vf~ki~~ql~~l~sl~l~~vSp~L~~~~dlel~vPgty~~~~~~i~i~~f~~~~~vitskqRpr 1976 (2341)
T KOG0891|consen 1897 SGDVKDLNQAWDIYYNVFKKIRKQLPQLTSLDLQYVSPKLLSAKDLELAVPGTYDPGKPIIRIQSFEPKFNVITSKQRPR 1976 (2341)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccccccccceeccCCccCCCceEEehhhccHHHHHHHHHhhhH
Confidence 0111211 23334455555555542 3355666678887762 236899999999999999999
Q ss_pred EEEEEeCCCceEeeeeecCCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEEcCCCCceeEEcCCCCchHHH
Q 000492 1121 VVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDY 1200 (1463)
Q Consensus 1121 ~i~~~gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~tl~~i 1200 (1463)
++.|.|+||+.|+|++| |++|+|||+|+||+|++||.++..+.+|.||+|.|.+|.|+|++++.|+|+|||++.|++..
T Consensus 1977 kl~i~gs~g~d~~~~lk-ghed~rQD~RvmQLf~Lvn~ll~~d~~~~rr~L~iq~Y~~i~ls~~sgL~gWv~~~dtlh~L 2055 (2341)
T KOG0891|consen 1977 KLVIRGSDGKDYQYLLK-GHEDLRQDERVMQLFGLVNTLLANDSETFRRNLTIQRYSVIPLSPDSGLIGWVPNCDTLHTL 2055 (2341)
T ss_pred HHhhcccchhhHHHHhh-chhhhhhHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhcCCCCCCceeeeecccccHHHH
Confidence 99999999999999999 78999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhccCCCCCCCCCCCcchhHHHHhh--hcchHhHHHHHHHHHhhhhh-hHHHHHHHHcCCchHHHHHHHHHHHhhhcc
Q 000492 1201 LIGSTRNGGAHGRYGIGDWSFLKCREH--MSNVKDKRIAFQEVCENFRP-VLHYFFLERFLQPAYWFEKRLAYTRSVAAS 1277 (1463)
Q Consensus 1201 l~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~k~~~f~~i~~~~~p-vl~~~~~~~f~~~~~w~~~R~~ft~S~A~~ 1277 (1463)
+....... ....+..++...++.-. -.....|..+|......... .+++-++-+.++++.|+.+|.+||+|.|+|
T Consensus 2056 ~r~~r~~k--~i~l~~eh~~~~~~~l~~~~ltl~qk~~vfe~~~~~t~G~dl~~~lwlkS~ssEaw~~rrt~yt~S~A~m 2133 (2341)
T KOG0891|consen 2056 IREYREKK--KIPLNIEHRVMLQMAPDYDHLTLMQKVEVFEYALSNTQGDDLYKVLWLKSPSSEAWLDRRTNYTRSLAVM 2133 (2341)
T ss_pred HHHHHHhh--ccCCcchHHHHHhcCccccchhhhhHHhHhHHHhhcCcHHHHHHHHHHhCCChhHHHHHhhhhHHHHHHH
Confidence 65432111 11122222222111000 00113477888877777666 567777889999999999999999999999
Q ss_pred chhhheeccCCCCCCeEEEecCCCcEEEeecchhhccccC-CCCCCCCCcccccchhhccccccccchhHHHHHHHHHHH
Q 000492 1278 SMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVM 1356 (1463)
Q Consensus 1278 S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~~-l~~pE~VPFRLTrniv~~mG~~g~eG~F~~~c~~t~~~L 1356 (1463)
||+|||+|+|||||+|.|+|+.||+++|||||.||+..+. .++||.+||||||+++++|.++|.+|.|+.+|+.+++++
T Consensus 2134 smvgyilGlGdrhpsNlmldr~tgkvihidfgdcfevA~~rek~pe~~pfRlTrmli~amev~gl~g~~~~t~e~v~~~l 2213 (2341)
T KOG0891|consen 2134 SMVGYILGLGDRHPSNLMLDRLTGKVIHIDFGDCFEVAMLREKFPEKVPFRLTRMLINAMEVTGIEGTYRITCEHVMRVL 2213 (2341)
T ss_pred HHHHHHhhccccchhhhhhhhcccceEEechHHHHHHHHhhccccccccHHHHHHHHHhHHHHhhhhHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999986 569999999999999999999999999999999999999
Q ss_pred hcChHHHHHHHHHHccCCCcccccChhHHHhhhhcc---c----------------ccccCCCCCCccccccchhHHHHH
Q 000492 1357 RTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEM---D----------------DDLETGLEGPEDEYEGNKDAERAL 1417 (1463)
Q Consensus 1357 R~~~~~l~~iLe~f~~DpL~~W~~~~~~~~~~~~~~---~----------------~~~~~~~~~~~~~~~~n~~a~~~l 1417 (1463)
|.+++.+++++++|+|||+++|........+..... . .+.....+........|..+.-++
T Consensus 2214 r~~~~sl~a~leafvydplinwr~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~~~~~~~~~e~~n~~~~~vl 2293 (2341)
T KOG0891|consen 2214 RTNKESLMAVLEAFVYDPLINWRLDDVLSPGKDEEEVGEKDPLKNRKELGLPRAMAGEEIAVLESSVKPEALNARAIQVL 2293 (2341)
T ss_pred cCChHHHHHHHHhhhcccchhhhcccccchhhhhcccCCCCcccchhhhccHHhhhccccccccccccccccChhhHHHH
Confidence 999999999999999999999998633221111000 0 000000111111122356677789
Q ss_pred HHHHhhcCCCC--CCCccCHHHHHHHHHHHhcCchhhhhhCcccccCC
Q 000492 1418 IRVKQKLDGYE--GGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1463 (1463)
Q Consensus 1418 ~rv~~kL~g~~--~~~~lsv~~qV~~LI~~Atd~~nL~~m~~gW~Pwl 1463 (1463)
.|+..|++|.+ ....++|..||..||+|||+|+|||+.|+||||+|
T Consensus 2294 ~~~~~kltg~~~~~~~~l~v~~qv~~l~~qats~e~lc~~yigwcpfw 2341 (2341)
T KOG0891|consen 2294 KRISDKLTGRDFVHEEPLDVPEQVEKLIQQATSPENLCQCYIGWCPFW 2341 (2341)
T ss_pred HhcccccceeeccCcccCcHHHHHHHHHHhhcChHhhhcccccCCCCC
Confidence 99999999954 45679999999999999999999999999999954
No 4
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=100.00 E-value=3.3e-79 Score=841.98 Aligned_cols=1086 Identities=21% Similarity=0.249 Sum_probs=692.8
Q ss_pred CCcccccCC----CCHHhhHHHHHHHhhccCCchhhhhcHHHHhhcHhHHHHHhHHHHHHHhcCCCcchhHHHHHHHHHH
Q 000492 173 KSTVWETDG----KTFETWICPLTYSLIGCCNDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGSKNVDVDLQKLISSQVQ 248 (1463)
Q Consensus 173 ~~~~w~~~~----~s~~eWir~ls~~Ll~~~~~~~Lr~~~~l~~~~~~~A~~LfP~~v~~~~~e~d~~~~~~~~ls~~~~ 248 (1463)
..+.|...+ ..|++|+.++.++++.+.+...++.|.-++..+..+++.++..++..||.+.-. ...+.+-.-+.
T Consensus 907 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~l~~~s~l~~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~~s~~ 984 (2105)
T COG5032 907 LFEAWNRVDFLLKDFWQEELDNLLVALLKELPFMALRDCSILSDLYFMLGRELWNSVSFECWLELMN--SYKRLLIKSLK 984 (2105)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHhccchHHhhhcchhHHHHhhccHHHHhHHhHHHHHHHhh--hhhHHHHHhHH
Confidence 345565322 239999999999999888999999999999999999999999999999987421 11111111111
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHhhHhhhccCCCCCcccccccccCCCCCCCccchhhhhhhhhhcccccccccccc
Q 000492 249 KYIFTESNKLIKSIQVFLNALNELRLCHVMERSSSVPPKRESSKYVKHSGSSAKPRSTSAKARDVVATSNATMTTSWDKV 328 (1463)
Q Consensus 249 ~~~~~~~~~~~~siq~~l~~~~~Lr~~~~ae~~~~~p~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (1463)
. ....+..++...+..+.. -+++|+++| ..
T Consensus 985 ~-~~~~~~~~~~~~~~~~~~------~n~~e~~~~-------------------------------------------~~ 1014 (2105)
T COG5032 985 S-KLHLPTIPILILQMLLDS------KNLTEFTEH-------------------------------------------QL 1014 (2105)
T ss_pred H-HhhcCCCCchhhhhhhhh------cchhhhhhh-------------------------------------------hh
Confidence 1 112222233334433322 122444433 23
Q ss_pred cccccCHHHHHHHHHhhCchhhhhhhhHhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCCchhhhhhhccc--
Q 000492 329 YWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH-- 406 (1463)
Q Consensus 329 ~wL~Id~~~lA~aA~~C~AyatALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~~-- 406 (1463)
++++++...++..+-.|+.++++++|.|.++.+. .....++.+++++.++.+.|..-|+....
T Consensus 1015 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~si~t~ls~~~~~~~~~~~~~~~~~~~~ 1079 (2105)
T COG5032 1015 KNLPLPSLSIGFYESLCSFLAKLLHDEELYFFPL---------------LFVSSLETLLSVNYHINQLDLRPNILKHFGS 1079 (2105)
T ss_pred heecchhhhhhHHHHHHHHHHHHhHHHHHHhccc---------------chHHHHHHHHhhhhhhhhhhhccCcchhhhh
Confidence 3577777777799999999999999999865431 01356888999999999999999964422
Q ss_pred --chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhch
Q 000492 407 --KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGC 484 (1463)
Q Consensus 407 --~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~ 484 (1463)
.......+|++.++|.+++..|-....... + ......|.+++....|.
T Consensus 1080 ~~~~~l~~~~~~~l~~~~~~l~~~~~~~~~~~--------~----------------------~~~~~~~~l~~~~~~~~ 1129 (2105)
T COG5032 1080 FVRFQLKPHLVKYLQRWYEALNRYFELLSKGD--------R----------------------LFAISFTKLRNVDALGK 1129 (2105)
T ss_pred hhHHhhhHHHHHHHHHHHHHHHHHHHHHhhcc--------c----------------------hhHHHHhhhhhhhHHHH
Confidence 233447899999999999999988776420 0 11134689999999998
Q ss_pred hhHHHHhhhccccccCCCCCCcchhHHHHHHHhccCCCCCCccccCCCCCCCCCcccchhhhhHHHHHHHHhcCChHHHH
Q 000492 485 MHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFY 564 (1463)
Q Consensus 485 ~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrLg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~~L~al~~~d~~~~~ 564 (1463)
|.......+.-+- .+.+..+.-..++.+.++|.+|.|+....+... +.....+..++.. ..+...+.++.+.+.
T Consensus 1130 ~~~~~~L~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~q~~~e~--~~~k~~~~~~~~s---~~~~~~~~~~~~~a~ 1203 (2105)
T COG5032 1130 LELYSSLAEIDMF-LSLHRRRKLLETLVATAYEQVGEWYKAQQLYEV--AQRKARSKEFPFS---LQYLYWHINDIDCAD 1203 (2105)
T ss_pred HHHHHHHHHHhhh-hccCcchhhhhHHHHHHHHHHHhHHHHHHHHHH--HhhhcccccCchh---hHHHHHcccchhhHh
Confidence 8876433322111 111222333566788899999999975433211 1122334444432 246678889999998
Q ss_pred HHH-HHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHH
Q 000492 565 RKL-KHSKQELVLSVACA-SEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLN 642 (1463)
Q Consensus 565 ~~i-~~aR~~l~~~Lsa~-s~ESy~~~Y~~lvrLq~L~ELe~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 642 (1463)
... -.++..++.++... ..+++.+++-...+.+...|+++++...++...+ .+ .-.-...+.
T Consensus 1204 ~~~~~~~~~~~~~~~~~i~~~~~w~~a~~~~~~~~~~~~~~e~~~~~~~~~~~-------------~~---~~~~~~~~~ 1267 (2105)
T COG5032 1204 KLQSVLAELSLVTGISELLLEESWRRALFSNIKDSLESELEEIIDGMYKSNED-------------FG---ALMLLSLSA 1267 (2105)
T ss_pred hhhhhhhhcccccchhhhccchhHHHHHhhhHHhhhhhhhhHHhhhhhhcccc-------------hH---HHHHHHHHH
Confidence 888 66788888899888 6789999999999999999999998865554322 00 000123455
Q ss_pred HHHHHHHHh---hccchhhhhhhHHHHHHHHHhhccchHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhhcC-C---C-
Q 000492 643 TEWSSILKR---TQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGF-RLSQAAAALHELKFLYT-G---P- 713 (1463)
Q Consensus 643 ~~W~~rl~~---~q~~~~~~EpiL~~R~~vl~il~~~~~~~~~wl~~A~laRkag-~~~~A~~aL~~l~~l~~-~---~- 713 (1463)
+.|..++.+ ++..+..|..+...+..+.. .....++|++++..|++.+ +.......+..+..-.. . .
T Consensus 1268 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~ 1343 (2105)
T COG5032 1268 ELWDKILEGRSSCSKSIKLSLNIWLDLSIVVS----PKDEPELFIKFVELCEASSIRSKLLEKNIQELLEKLEEIKSPLG 1343 (2105)
T ss_pred hccchhhcchhhhhHHHHHHHHHHHHHhhhcC----HhhhhhHHHHHHHHHhhhhHHHHhcchhHHHHHhccccccchhh
Confidence 688888888 77777766655554433322 2333479999999999999 55666666555432111 0 0
Q ss_pred --CCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhhHHHHHhHHHHHhhc-CChHHHHHhhhchhcc
Q 000492 714 --GDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRS-SNSRIILENYLKPAVS 790 (1463)
Q Consensus 714 --~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~~~~~~~~a~l~~l~g~wlaet~~-e~~~~I~~~Y~~~a~~ 790 (1463)
....++.. .+..-+..|+......+....+.+.. +.+.++..... -....+...|.+.+
T Consensus 1344 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~-- 1405 (2105)
T COG5032 1344 TLRDRLPPPW---ALLDLKRLLATWRQNAFLRINPELLP-------------LLSSLLNLQSSSLSKQLVSRGSSESA-- 1405 (2105)
T ss_pred hhhhcCCCCc---hhhhhhhhhhHHHHhhhhhhchhhcc-------------ccchhhhccchhccccccccchhhhh--
Confidence 00111111 12344555555544444432221111 11111111000 00000000000000
Q ss_pred cccccccchhhHHHHhhhhHhHHHHHHHHHHHhHHHHhchHHHHHHHHHhhhhHHHHHHHHHHHhhcccCccchhhHHHH
Q 000492 791 FSEDQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQ 870 (1463)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~la~f~d~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~y~~~~~ 870 (1463)
+ .--.++.|+-..+ .+.+.|....++......+ ..++..+......++.+|++.+.
T Consensus 1406 -----------~------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~ 1461 (2105)
T COG5032 1406 -----------I------SINSFASVARKHF------LPDNQLKKIYQLSNILISE-AFLLLRYLLLCRLGRRELKAGLN 1461 (2105)
T ss_pred -----------H------HHHHHHHHHHHhc------CcHHHHHHHhhhhhhhcch-HHHHHHHHHHHHhhhHHHHHHHH
Confidence 0 0000111111000 1112222222211111111 11111222222223334443221
Q ss_pred H-----HHHHhhhcHHHHH-HhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHhccCchHHHHHHHHHhhcccc
Q 000492 871 E-----LQKQLAMDREEAQ-KLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQ 944 (1463)
Q Consensus 871 ~-----~~~~~~lD~~e~~-~l~~~~~~fl~~Al~~Yl~sL~~~~~~~~~~~~RllsLW~~~~~~~~v~~~~~~~~~~vp 944 (1463)
. .+-...+...+.. ........+..++++..+.+...+..-+.++.+|.+.+|+..+....+.+.+..+.....
T Consensus 1462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1541 (2105)
T COG5032 1462 VWNLTNLELFSDIQESEFFEWGKNLKLLSIIPPIEEIFLSNALSCYLQVKDLLKKLNLFELLGSLLSAKDAAGSYYKNFH 1541 (2105)
T ss_pred hhcccchhHHHHHHHHHHHHhhhhhHHhccCCchhHHHHhhhccchHHHHHHHHhhHHHHHhhhhhhHHHHHHhhhhhcc
Confidence 0 0000000111111 112233456677888899999988888888999999999999877677777777776666
Q ss_pred ccc-hhhhhHHHhhccCCCccccccccHHHHHHHHHHHHHHhCChhHHHHHHhhccccch---------hhhhcccchhh
Q 000492 945 SYK-FIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRI---------KDKQRSRNSFV 1014 (1463)
Q Consensus 945 s~k-fl~~lpQL~sRl~~~~~~~~~~~f~~~L~~ll~~i~~~hP~~~l~~l~~~~~~~~~---------~~~~~~~~~~~ 1014 (1463)
... |++++||+..++.... ..-...+..++.++++.||++..+++.+..++... ..+.+.+....
T Consensus 1542 ~~~~~~~~~~~~~~l~~~l~-----~~~~~~~~~~l~~~~~~~~~a~~~~L~~~~~s~~~~~e~~~~~~~~~~~~~~~~~ 1616 (2105)
T COG5032 1542 IFDLEISVIPFIPQLLSSLS-----LLDLNSAQSLLSKIGKEHPQALVFTLRSAIESTALSKESVALSLENKSRTHDPSL 1616 (2105)
T ss_pred cccccccccchhhhhhhhcc-----hhHHHHHHHHHHhhhhhchhhhhhhhhHHHHHhhhhhHhHHHHHhhhhhcCChhh
Confidence 655 8888888888877542 12235688999999999999999999754432211 11122222222
Q ss_pred hhhhHHHHHH------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHhhhh---ccc--c------------
Q 000492 1015 VDMDKKLAAE------------------NLLEELSSYHGAIIRQMKQMVDVYIKLAELE---TRR--E------------ 1059 (1463)
Q Consensus 1015 ~~~~~~~~a~------------------~il~~l~~~~~~~~~~~~~l~~~~~~la~~~---~~~--~------------ 1059 (1463)
+........+ .++.++...+.+ +.........+.... +.. .
T Consensus 1617 v~~~~~~~~E~~~~~~~l~~~~~~~~l~q~~~r~~~~~~~----i~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~ 1692 (2105)
T COG5032 1617 VKEALELSDENIRIAYPLLHLLFEPILAQLLSRLSSENNK----ISVALLIDKPLHEERENFPSGLSLSSFQSSFLKELI 1692 (2105)
T ss_pred HhHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHhcccchH----HHHHHHHHHHHHHHhccccccccchhHHHHHHHHHH
Confidence 2111111111 111111111110 001111111111100 000 0
Q ss_pred ----------------ccccccc--------chhhhhhccccc---cccccc--c-ccCCCCCCcccCC-CcCccccccc
Q 000492 1060 ----------------DTNKRIQ--------LPREIRCLRQLE---LVPVVT--A-TVPIDCTCQYNEG-SFPYFKGLAE 1108 (1463)
Q Consensus 1060 ----------------~~~~~~~--------~~~~l~~l~~l~---~~p~~t--~-~lp~~~~~~y~~~-~~~~i~~f~~ 1108 (1463)
..+.... +++.+.++.... .-|... . .+.+..+++|..+ ++|.|.+|.|
T Consensus 1693 ~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~P~~~~~~k~~v~I~~f~p 1772 (2105)
T COG5032 1693 KKSPRKIRKKFKIDISLLNLSRKLYISVLRSIRKRLKRLLELRLKKVSPKLLLFHAFLEIKLPGQYLLDKPFVLIERFEP 1772 (2105)
T ss_pred hhhHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHhccccccccCCcccccCCCCceEEEecC
Confidence 0000000 011111100000 011100 0 1122234455444 5789999999
Q ss_pred eEEEecC-CCcceEEEEEeCCCceEeeeeecCCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEEcCCCCce
Q 000492 1109 SVMVMNG-INAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGI 1187 (1463)
Q Consensus 1109 ~~~v~~s-~~~Pk~i~~~gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs~~~GL 1187 (1463)
++.+++| .++||+++++|+||+.|++++|+ +||+|||++|||++++||++|+++++|+||++.|++|+|||+||++|+
T Consensus 1773 ~~~~~~~~~~~p~rl~~rgsdG~~y~~i~K~-~dDlRQD~~~~Ql~~l~n~iL~~~~~~~~R~l~i~~Y~Vipls~~~Gi 1851 (2105)
T COG5032 1773 EVSVVKSHLQRPRRLTIRGSDGKLYSFIVKG-GDDLRQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVIPLSPGSGI 1851 (2105)
T ss_pred ceeeeecccccceEEEEEecCCcEEEEEeec-CccchHHHHHHHHHHHHHHHHHhChHhhhcCccceeeeeEeccCCcce
Confidence 9999987 99999999999999999999995 699999999999999999999999999999999999999999999999
Q ss_pred eEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHh-----hhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchH
Q 000492 1188 LEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCRE-----HMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 1262 (1463)
Q Consensus 1188 IE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~-----~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~f~~~~~ 1262 (1463)
||||||++||+.|+..... ++++. ...+.+ .......|.+.|...+.+++|++++||+++|++|.+
T Consensus 1852 Ie~vpn~~tl~sI~~~~~~------~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~f~~~~~ 1922 (2105)
T COG5032 1852 IEWVPNSDTLHSILREYHK------RKNIS---IDQEKKLAARLDNLKLLLKDEFFTKATLKSPPVLYDWFSESFPNPED 1922 (2105)
T ss_pred EEEecCcchHHHHHHHHhh------hcCCC---hhHHhhhhhhhhhhcccchhHHhhhhhcCCCchHHHHHHHhcCChhh
Confidence 9999999999999976433 22221 111211 111223467788888888889999999999999999
Q ss_pred HHHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhc-cccCCCCCCCCCcccccchhhccccccc
Q 000492 1263 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFE-QGLMLKTPERVPFRLTRDIIDGMGVTGV 1341 (1463)
Q Consensus 1263 w~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~-~g~~l~~pE~VPFRLTrniv~~mG~~g~ 1341 (1463)
|+.+|+|||+|+|+|||+|||||+|||||+|||||+.||+++|||||++|+ +|+.+++||.|||||||||+++||++|+
T Consensus 1923 w~~aR~Ny~~SlA~ySvigYiLglgDRH~~NIliD~~sG~viHiDFg~il~~~p~~~~~pE~vPFrLT~~iv~~mg~~g~ 2002 (2105)
T COG5032 1923 WLTARTNFARSLAVYSVIGYILGLGDRHPGNILIDRSSGHVIHIDFGFILFNAPGRFPFPEKVPFRLTRNIVEAMGVSGV 2002 (2105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCcCCceEEEEcCCCcEEEehHHHHHhcCCCCCCCcccCcHhhhHHHHHhcCccch
Confidence 999999999999999999999999999999999999999999999977766 5567999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhHHHhhhhcccccccCCCCCCccccccchhHHHHHHHHH
Q 000492 1342 EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVK 1421 (1463)
Q Consensus 1342 eG~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~rv~ 1421 (1463)
||.||.+|+.++++||+|.+.|++++++|++|||++|...|- .....+.++..+.+|+.
T Consensus 2003 EG~Fr~~c~~~~~~LRk~~~~L~~~le~f~~d~l~~W~~~p~---------------------~~~~~~~~~~~v~~rf~ 2061 (2105)
T COG5032 2003 EGSFRELCETAFRALRKNADSLMNVLELFVRDPLIEWRRLPC---------------------FREIQNNEIVNVLERFR 2061 (2105)
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHhcCcchhhhcCcc---------------------ccchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999972210 00123556677889999
Q ss_pred hhcCCCCC--CCccCHHHHHHHHHHHhcCchhhhhhCcccccCC
Q 000492 1422 QKLDGYEG--GEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1463 (1463)
Q Consensus 1422 ~kL~g~~~--~~~lsv~~qV~~LI~~Atd~~nL~~m~~gW~Pwl 1463 (1463)
.|+.|.+. ...++|+++|+.||++|||+.|||+||+||+|||
T Consensus 2062 ~kl~~~~~~~~~~l~I~~sv~~li~~a~d~~~L~~~yi~w~~f~ 2105 (2105)
T COG5032 2062 LKLSEKDAEKFVDLLINKSVESLITQATDPFQLATMYIGWMPFW 2105 (2105)
T ss_pred HHhhhhhhhhhcCCcHHHHHHHHHHHHcCHHHHHhhccccccCC
Confidence 99998543 3568999999999999999999999999999997
No 5
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.1e-65 Score=676.13 Aligned_cols=966 Identities=17% Similarity=0.222 Sum_probs=684.7
Q ss_pred cccCHHHHHHHHHhhCchhhhhhhhHhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCCchhhhhhhccc---c
Q 000492 331 LSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH---K 407 (1463)
Q Consensus 331 L~Id~~~lA~aA~~C~AyatALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~~---~ 407 (1463)
++++..++.--+-.-++|.+++.++|.+...+.. +. ........++|-+||.+|+|-|.+||++... .
T Consensus 2414 ~~lpp~Li~yl~kt~~~wh~~I~lLE~~~~~~~~-------~~--~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~~~~ 2484 (3550)
T KOG0889|consen 2414 IELPPHLIKYLGKTYNLWHTSIRLLEDHQSNKEM-------EN--TKGDESCLDSLAELYRSLNEEDMFYGLWRRRAKFP 2484 (3550)
T ss_pred CCCCHHHHHHHhccchHHHHHHHHHHHHHHHHHh-------hh--hhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhccH
Confidence 6788899999999999999999999987654310 10 1223456899999999999999999999743 3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhchhhH
Q 000492 408 LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHV 487 (1463)
Q Consensus 408 l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~ 487 (1463)
-+.+...||..|.|++|+..||..+..... + ..| ++++|+ .-|+ ..+|+|.+.|.+|++
T Consensus 2485 eT~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~-------~-----~~~-----~~~~Ey--~lWe--d~WI~Ca~eL~QWdv 2543 (3550)
T KOG0889|consen 2485 ETMVALSYEQLGFWEEAQSLYEKAQVKARE-------G-----AIP-----YSESEY--KLWE--DHWIRCASELQQWDV 2543 (3550)
T ss_pred HHHHHHHHHHhhhHHHHhhHHHHHHHHHhc-------c-----cCC-----CCcHHH--HHHH--HHHHHHHHHHHHHHH
Confidence 456778999999999999999999886533 1 112 344453 6776 569999999999999
Q ss_pred HHHhhhccccccCCCCCCcchhHHHHHHHhccCCCCCCccccCCCCCCCCCcccchhhhhHHHHHHHHhcCCh---HHHH
Q 000492 488 LDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDS---EEFY 564 (1463)
Q Consensus 488 L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrLg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~~L~al~~~d~---~~~~ 564 (1463)
+-.+++... -.++-.|+|||+.+|+.+...... ......+...|+..+|+++.++++.+. ..+.
T Consensus 2544 l~e~~k~~~-----------~~~llle~aWrlsdw~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 2610 (3550)
T KOG0889|consen 2544 LTEFGKHEG-----------NYELLLECAWRLSDWNDQKDALEQ--KAKSLSDVPGFRKELYDAFLALQKKNSNGVGEFE 2610 (3550)
T ss_pred HHHHHhccC-----------CceeeeehhccCCcchhHHHHHHH--hhhccCCCCcHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 988885422 234567999999999987654321 112345667888899999999986543 5788
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHHHH
Q 000492 565 RKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTE 644 (1463)
Q Consensus 565 ~~i~~aR~~l~~~Lsa~s~ESy~~~Y~~lvrLq~L~ELe~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 644 (1463)
.+|..+-+.-+.++.++..-++..-++.+..+|++.|++|..++.-.. +++- .+.. ......++.+.++
T Consensus 2611 ~~i~e~~~l~i~~w~~lP~~v~~~h~~lL~~~QqivEl~Ea~~I~s~l-~~~n---~~n~-------~~~~~d~Ksil~~ 2679 (3550)
T KOG0889|consen 2611 RLIGEAIQLAIREWRQLPERVNHGHVPLLQAFQQIVELQEAAQIYSDL-NDGN---VQNL-------DNKAQDIKSILQT 2679 (3550)
T ss_pred HHHHHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHHHHhc-cccc---cccc-------chhHHHHHHHHHH
Confidence 888888888888888877655555577888899999999999874322 2211 1100 0122357889999
Q ss_pred HHHHHHhhccchhhhhhhHHHHHHHHHhhc----c-----------------chHHHHHHHHHHHHHHhcCChhHHHHHH
Q 000492 645 WSSILKRTQLHMNLLEPFMAFRRVLLQILS----C-----------------KDFTMQHLLESASTLRKGFRLSQAAAAL 703 (1463)
Q Consensus 645 W~~rl~~~q~~~~~~EpiL~~R~~vl~il~----~-----------------~~~~~~~wl~~A~laRkag~~~~A~~aL 703 (1463)
|+.|+.....++++|+.+..+|+.+++++. . -.+.....+.+|+.|||.|-...+...|
T Consensus 2680 Wr~RlP~~~Dd~~~Wsdl~~WRq~~y~~I~~~~~~~~~~~~~~~ns~~~~~Gyhe~A~~in~fakvArkh~l~~vcl~~L 2759 (3550)
T KOG0889|consen 2680 WRDRLPNVWDDMNQWSDLITWRQHAYSMINKAYLPLVPYKQNASNSNNLYRGYHELAWAINRFAKVARKHGLPDVCLNQL 2759 (3550)
T ss_pred HhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHhcccchhhhccCCcchHHHhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 999999999999999999999998887641 0 1345566789999999999999999988
Q ss_pred HHHHhhcCCCCCCCchhhhhHhH-HHHHHHHHcC-ChHHHHHHHHHHHhhccCCCchhhHHHHHhHHHHHhhcCChHHHH
Q 000492 704 HELKFLYTGPGDQCSTVYWLGRL-EEAKLLRAQG-QHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIIL 781 (1463)
Q Consensus 704 ~~l~~l~~~~~~q~~~~~~~a~l-E~Ak~lW~~G-e~~~Ai~~Lq~l~~~~~~~~~~a~l~~l~g~wlaet~~e~~~~I~ 781 (1463)
..+-+++ +.+..+++.++ |.|+..-..- |...+++.++......+...+.|+.+.+.|.++++.+...+.+
T Consensus 2760 ~~iytlp-----~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn-- 2832 (3550)
T KOG0889|consen 2760 AKIYTLP-----NVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEAN-- 2832 (3550)
T ss_pred HHHhccC-----cchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhH--
Confidence 8876553 33455776665 8888777664 8888999888777777777889999999999999877444443
Q ss_pred HhhhchhcccccccccchhhHHHHhhhhHhHHHHHHHHHHHhHHHHhchHHHHHHHHHhhhhHHHHHHHHHHHhhcccCc
Q 000492 782 ENYLKPAVSFSEDQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGE 861 (1463)
Q Consensus 782 ~~Y~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~f~d~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~~~~~~~~~ 861 (1463)
+ .+..|+++. +...++++.++.|+|.+|+. . +.
T Consensus 2833 ~-~fs~AvQi~-----------~~l~KaW~~Wg~y~~~~f~~------e---------------------------~~-- 2865 (3550)
T KOG0889|consen 2833 K-AFSAAVQID-----------DGLGKAWAEWGKYLDNRFNK------E---------------------------PV-- 2865 (3550)
T ss_pred H-HHHHHHHHH-----------hhhHHHHHHHHHHHHHHHhc------c---------------------------Cc--
Confidence 2 334476553 23567888899999988742 0 00
Q ss_pred cchhhHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCcch-HHHHHHHHHHhcc--CchHHHHHHHHH
Q 000492 862 KTDYSIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDV-RVVFRLVSLWFSL--SSRQNVIKNMVD 938 (1463)
Q Consensus 862 ~~~y~~~~~~~~~~~~lD~~e~~~l~~~~~~fl~~Al~~Yl~sL~~~~~~~~-~~~~RllsLW~~~--~~~~~v~~~~~~ 938 (1463)
-..+.+.|+-+|++++.....+.. ..+.|+ |||-- .....+.+++.+
T Consensus 2866 ----------------------------ni~~a~~avsCyLqA~~~~~~skaRk~iakv--LwLls~dda~~~l~~~~~k 2915 (3550)
T KOG0889|consen 2866 ----------------------------NISFACNAVSCYLQAARLYNSSKARKLIAKV--LWLLSFDDSLGTLGDVFDK 2915 (3550)
T ss_pred ----------------------------ccHHHHHHHHHHHHHhccccchhhHHHHHHH--HHHHHhccccchHHHHHHH
Confidence 014677899999999998866554 467786 78752 233467799999
Q ss_pred hhccccccchhhhhHHHhhccCCCccccccccHHHHHHHHHHHHHHhCChhHHHHHHhhccccchhh---------hh--
Q 000492 939 TIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRIKD---------KQ-- 1007 (1463)
Q Consensus 939 ~~~~vps~kfl~~lpQL~sRl~~~~~~~~~~~f~~~L~~ll~~i~~~hP~~~l~~l~~~~~~~~~~~---------~~-- 1007 (1463)
++..||.+.|++|+|||+..+.+... +.+..++.++++.||||+.|||.+.+..-.+.+ +.
T Consensus 2916 ~l~~ip~~~wl~~IPQLl~sLs~~e~--------~~~~~iL~kia~~yPQal~f~lRta~~~~~i~qR~~~~~~~~~~~~ 2987 (3550)
T KOG0889|consen 2916 FLGEIPVWNWLYFIPQLLTSLSKKEA--------KLVRLILIKIAKSYPQALYFPLRTAREDLVIEQRQQVEVMGDKSDT 2987 (3550)
T ss_pred hhccCCchhhhhhhHHHHhhccccch--------hHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 99999999999999999999998531 568899999999999999999966432200100 00
Q ss_pred ---cccchhhhhhh----------------------HHHHHHHHHHHHH----hhHHHHHHHH---------H---HHHH
Q 000492 1008 ---RSRNSFVVDMD----------------------KKLAAENLLEELS----SYHGAIIRQM---------K---QMVD 1046 (1463)
Q Consensus 1008 ---~~~~~~~~~~~----------------------~~~~a~~il~~l~----~~~~~~~~~~---------~---~l~~ 1046 (1463)
-.|.+.+.... +..-++.|++..- ......+.++ + .++.
T Consensus 2988 ~~p~~r~~~i~~~~r~~~p~~~s~~~~ld~~~~~w~~~~~l~~il~~~~~~la~~~~~~~~~i~~~~~~~~~e~~~r~v~ 3067 (3550)
T KOG0889|consen 2988 TDPMGRPSKISQKQRNLHPILSSLEKILDSVQLVWERLFDLEEILKTAYQLLAKTLETLFDKIQARFKSTPEEHALRLVN 3067 (3550)
T ss_pred CCCCCcHHHHHHHhhccCcchhhHHhhhccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccHHHHHHHH
Confidence 00111110000 0011111111110 0001111110 0 1111
Q ss_pred HHHH-Hhhhh-cccc--ccc----------------------------------cc-----ccchhhhhh----------
Q 000492 1047 VYIK-LAELE-TRRE--DTN----------------------------------KR-----IQLPREIRC---------- 1073 (1463)
Q Consensus 1047 ~~~~-la~~~-~~~~--~~~----------------------------------~~-----~~~~~~l~~---------- 1073 (1463)
++.. .+... +... ..+ .. ..++.-+.+
T Consensus 3068 al~~~~~~~~~~r~~ivt~~~~~~~~~~~~l~~~~~~vl~~~~~~~~k~dFi~~~~~~~~~~~l~~~i~klk~w~~~le~ 3147 (3550)
T KOG0889|consen 3068 ALLNIDGIQNGNRLGIVTKNTKSLSDTEMNLNRFASNVLPDPVRKKFKEDFITNKDGMKCICDLENYIDKLRKWRSRLES 3147 (3550)
T ss_pred HHHHHhhhccccccccccccccCCcchHHHHHHHHHHhcchHHHHHHHHHHHhcccCCcccccHHHHHHHHHHHHHHHHH
Confidence 1111 00000 0000 000 00 000000000
Q ss_pred ----cc---cccc-cccccc----ccCCCCCCccc-----CCCcCccccccceEEEe-cCCCcceEEEEEeCCCceEeee
Q 000492 1074 ----LR---QLEL-VPVVTA----TVPIDCTCQYN-----EGSFPYFKGLAESVMVM-NGINAPKVVECFGSDGHKYRQL 1135 (1463)
Q Consensus 1074 ----l~---~l~~-~p~~t~----~lp~~~~~~y~-----~~~~~~i~~f~~~~~v~-~s~~~Pk~i~~~gsdG~~y~~L 1135 (1463)
++ .++. .+.... .-.++-+++|. +..++.|.+|+|.|+++ ++...-||++++|+||+.|+|.
T Consensus 3148 k~~~~pk~~~LE~~s~~L~~F~hq~~evEiPGqyl~~k~~~~~~v~I~RF~P~veiv~~~~~~~rRl~iRG~dGk~~~~~ 3227 (3550)
T KOG0889|consen 3148 KVDRFPKKLNLEEKSRFLSNFSHQFDEVEIPGQYLLDKSNNNYFVKIERFEPRVEIVRGHGMSYRRLYIRGSDGKIYPFA 3227 (3550)
T ss_pred HHhcccccccHHhhchHHhcccccCCcccCChHHhcccchhhhhhhHHHhccchhhhcccceeEEEEEEeccCCeeccee
Confidence 00 0000 000000 00111123331 12357899999999877 6778999999999999999765
Q ss_pred ee-cCCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCC
Q 000492 1136 AK-SGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRY 1214 (1463)
Q Consensus 1136 ~K-~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~ 1214 (1463)
+. +|.-+-|.++||+|+++++|..|.+++||+||++.+.++.+||++++++|+|.+|+..+|++|+..+....+ +
T Consensus 3228 ~~~~~~~~sRreErvlQL~r~lN~~l~~~~Et~rR~l~~~~p~~ipvs~q~rl~ed~ps~~tl~~I~~~~c~~~~----~ 3303 (3550)
T KOG0889|consen 3228 VQYPGLRNSRREERVLQLFRMLNESLGKNKETRRRHLEFKLPIVIPVSSQMRLVEDKPSSITLQEIYEEYCARNN----V 3303 (3550)
T ss_pred eecccCCCccHHHHHHHHHHHHHHHhccChhhhhhhcCccCceeeeccCceEEecCCcchhhHHHHHHHHHHhcC----C
Confidence 54 356889999999999999999999999999999999999999999999999999999999999976433222 2
Q ss_pred CCCc---ch---hHHHHhhhcc----hHhHHHHHHHHHhhhhh--hHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhh
Q 000492 1215 GIGD---WS---FLKCREHMSN----VKDKRIAFQEVCENFRP--VLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGY 1282 (1463)
Q Consensus 1215 ~~~~---~~---~~~~r~~~~~----~~~k~~~f~~i~~~~~p--vl~~~~~~~f~~~~~w~~~R~~ft~S~A~~S~vgy 1282 (1463)
.+.+ .. +.+|+..... .+.++.+|+.+...+.| ++++||.++|+++.++|.+|++|+.++|+.++.+|
T Consensus 3304 ~~D~~i~~~~d~l~~~~~~~~~~~~~~~lr~~i~e~i~~~~vp~sil~dy~~~tf~~~~d~w~frk~f~~qla~~~~~~~ 3383 (3550)
T KOG0889|consen 3304 SPDDPILLYFDRLAQAYSVLIGLTAAHQLRGQIFEDIQKTMVPRSILKDYFYKTFTNYSDFWTFRKQFTDQLAVFSFMEY 3383 (3550)
T ss_pred CcchhhHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCChhhhhhhHhHHHHHHHHHHHHHH
Confidence 2211 11 2233333211 23478899999999999 89999999999999999999999999999999999
Q ss_pred eeccCCCCCCeEEEecCCCcEEEeecchhhc-cccCCCCCCCCCcccccchhhccccccccchhHHHHHHHHHHHhcChH
Q 000492 1283 IVGLGDRHAMNILIDQATAEVVHIDLGVAFE-QGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKE 1361 (1463)
Q Consensus 1283 ILGLGDRH~~NILld~~tG~vvhIDfg~~F~-~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~F~~~c~~t~~~LR~~~~ 1361 (1463)
++.+|.|.|+.+++.+.||.+..-||-+... ..+.+...|.|||||||||+.++|-.|+||.+...+.++.+||-++.+
T Consensus 3384 ~lni~~~~p~k~~~~~dsG~v~~~~~~~~~~~~~~~~~~~~~VpFRlTpni~~~i~~~~veg~l~~s~~a~ar~l~~p~~ 3463 (3550)
T KOG0889|consen 3384 MLNINGRGPAKLTFAKDSGKVFNTDFLPSYISSKPIFHNNEPVPFRLTPNIQEFIGDFGVEGLLAGSMMAIARCLIEPDF 3463 (3550)
T ss_pred HHhcCCCCccceeeeeccccccchhhccCcccCccccccCCcCCeeecCCchhhhcchhhhhhhHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999884 446688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCcccccChhHHHhhhhcccccccCCCCCCccccccchhHHHHHHHHHhhcCC--CCCCCccCHHHHH
Q 000492 1362 ALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDG--YEGGEMRSVHGQV 1439 (1463)
Q Consensus 1362 ~l~~iLe~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~rv~~kL~g--~~~~~~lsv~~qV 1439 (1463)
.+-.++..|++|++++|.....+.. ..++......| ..++.|..|+.. ..+....+....+
T Consensus 3464 ~l~~~l~~~~RDE~~~w~~~~~~~~-------------~~~~~~~~~v~----~~v~~i~rrv~~~~~~~~ge~~~~~t~ 3526 (3550)
T KOG0889|consen 3464 ELDPYLQLFFRDEIISWFKQQTKGV-------------PADPLLEEMVN----SNVDLIMRRVASLSSENSGELPDNQTV 3526 (3550)
T ss_pred chhHHHHHHHHHHHHHHhhccccCC-------------cCChhhhhhHH----HHHHHHhhhhhhhccccccCCCCCccH
Confidence 9999999999999999974321100 00011011112 234444444432 1122223333479
Q ss_pred HHHHHHhcCchhhhhhCcccccCC
Q 000492 1440 QQLIQDAIDPERFCLMFPGWGAWL 1463 (1463)
Q Consensus 1440 ~~LI~~Atd~~nL~~m~~gW~Pwl 1463 (1463)
..||.+|+|++|||||+|.|+|||
T Consensus 3527 ~~lis~A~s~~nLaqmDp~w~pWl 3550 (3550)
T KOG0889|consen 3527 IDLISQATSPDNLAQMDPTWHPWL 3550 (3550)
T ss_pred HHHHHHhcChhhhhcCCccccccC
Confidence 999999999999999999999997
No 6
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=100.00 E-value=7.2e-69 Score=615.72 Aligned_cols=274 Identities=65% Similarity=1.165 Sum_probs=258.0
Q ss_pred cccccceEEEecCCCcceEEEEEeCCCceEeeeeecCCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEEcC
Q 000492 1103 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1182 (1463)
Q Consensus 1103 i~~f~~~~~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs 1182 (1463)
|.+|.|.|.|++|+++||+|+++|+||+.|+||+|. +||+|||+|+||+|++||++|++++||++|+|.++||.|||||
T Consensus 1 ~~~f~~~v~v~~s~~~Pkri~~~gsdG~~y~fl~K~-~dDlR~D~rimQl~~~~n~il~~~~e~~~r~l~i~~y~vipls 79 (279)
T cd05171 1 VSKFKDVFTTAGGINAPKIITCVGSDGKKYKQLLKG-GDDDRQDAVMEQVFQLVNTLLERNKETRKRKLRIRTYKVVPLS 79 (279)
T ss_pred CCCccCeEEEecCCCCCEEEEEECCCCCEEEEEecC-CCcccHHHHHHHHHHHHHHHHhhChhhhhcCceeecceEEecC
Confidence 568999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred CCCceeEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhc-----chHhHHHHHHHHHhhhhhhHHHHHHHHc
Q 000492 1183 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMS-----NVKDKRIAFQEVCENFRPVLHYFFLERF 1257 (1463)
Q Consensus 1183 ~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~k~~~f~~i~~~~~pvl~~~~~~~f 1257 (1463)
+++||||||+|++||++|+.... +.+.++.+.++...++++.+. ...+++++|++++.+++|++++||++.|
T Consensus 80 ~~~GLIe~v~~~~tl~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~i~~~~~p~l~~~f~~~~ 156 (279)
T cd05171 80 PRAGILEWVDGTIPLGEYLVGAT---GAHERYRPGDWTARKCRKAMAEVQKESNEERLKVFLKICKNFRPVFRYFFLEKF 156 (279)
T ss_pred CCceEEEECCCChhHHHHHHHhh---hcccccCccchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHhCcHHHHHHHHHHC
Confidence 99999999999999999987543 457777777776666666552 2356889999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCcccccchhhccc
Q 000492 1258 LQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMG 1337 (1463)
Q Consensus 1258 ~~~~~w~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG 1337 (1463)
++|++||.+|++||+|+|++||+|||||||||||+||||++.||+|+|||||++|++|+.+++||.|||||||||+++||
T Consensus 157 ~~~~~~~~~r~~F~~S~A~~s~~~yilglgDRh~~NIll~~~tG~v~hiDf~~~f~~~~~l~~pe~vPFRLT~~~~~~lg 236 (279)
T cd05171 157 LDPQDWFERRLAYTRSVATSSIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFEQGKILPVPETVPFRLTRDIVDGMG 236 (279)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccEEEEcCcCcEEEEechhhhccCcCCCCCCcCChhhhHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCccccc
Q 000492 1338 VTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1380 (1463)
Q Consensus 1338 ~~g~eG~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~W~~ 1380 (1463)
+.|++|.|+.+|++++++||++++.|+++|++|+||||++|++
T Consensus 237 ~~g~~g~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~dpl~~W~~ 279 (279)
T cd05171 237 ITGVEGVFRRCCEKTLEVLRDNKDAILTILEVLLYDPLYSWTV 279 (279)
T ss_pred CCCCcchHHHHHHHHHHHHHcChHHHHHHHHHHHhCccccccC
Confidence 9999999999999999999999999999999999999999963
No 7
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=100.00 E-value=3e-67 Score=608.90 Aligned_cols=276 Identities=37% Similarity=0.642 Sum_probs=244.3
Q ss_pred cccccceEEEecCCCcceEEEEEeCCCceEeeeeecCCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEEcC
Q 000492 1103 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1182 (1463)
Q Consensus 1103 i~~f~~~~~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs 1182 (1463)
|.+|.|+|+|++|+++||+|+++|+||+.|+||+|+ +||||||+||||||++||.+|+++++|++|+|.|+||.||||+
T Consensus 1 I~~f~~~v~V~~Sk~~Pkri~~~gsDG~~y~fLlK~-~dDLR~D~RimQlf~l~N~ll~~~~~~~~r~L~i~tY~ViPLs 79 (307)
T cd05170 1 IESVGSTVTILPTKTKPKKLAFLGSDGKKYTYLFKG-REDLHLDERIMQFLSIVNTMFASIKDQESPRFRARHYSVTPLG 79 (307)
T ss_pred CccccCeEEEEecCCCceEEEEECCCCCEEEEEecC-CCcccHHHHHHHHHHHHHHHHHhChhhhccCceeecceEEEcC
Confidence 678999999999999999999999999999999994 6999999999999999999999999999999999999999999
Q ss_pred CCCceeEEcCCCCchHHHhhhhccCCCC----------C--CC----CCCCcchhHHHHhhhc-------------chHh
Q 000492 1183 PSAGILEWVDGTVPLGDYLIGSTRNGGA----------H--GR----YGIGDWSFLKCREHMS-------------NVKD 1233 (1463)
Q Consensus 1183 ~~~GLIE~v~~t~tl~~il~~~~~~~~~----------~--~~----~~~~~~~~~~~r~~~~-------------~~~~ 1233 (1463)
+++||||||+|+.||.+++..+.+..+. + .. ..+.+..+.+....+. ....
T Consensus 80 ~~~GLIEwv~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 159 (307)
T cd05170 80 PRSGLIQWVDGATPLFGLYKRWQQREAVLQAQKSQVGYQNPQIPGIVPRPSDLFYNKITPALKAHGLSLDVSRRDWPLSV 159 (307)
T ss_pred CCcceEEEcCCChhHHHHHHHHHHhhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHhhccccccchhhccHHH
Confidence 9999999999999999998653221110 0 00 0111111122221111 1134
Q ss_pred HHHHHHHHHhhhhh-hHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhh
Q 000492 1234 KRIAFQEVCENFRP-VLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAF 1312 (1463)
Q Consensus 1234 k~~~f~~i~~~~~p-vl~~~~~~~f~~~~~w~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F 1312 (1463)
++++|.+++++++| .++++++..+++|++||.+|++||+|+|++||+|||||||||||+||||++.||+|+|||||++|
T Consensus 160 ~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~w~~~r~~f~~s~A~~s~~~yilglgDRh~~NIli~~~tG~v~hiDf~~~f 239 (307)
T cd05170 160 LRQVLDELMQETPKDLLARELWCSSTTSSEWWSVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNVCF 239 (307)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCccEEEEcCCCcEEEEeeHhhh
Confidence 68899999999888 57888888999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccchhhccccccccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000492 1313 EQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1379 (1463)
Q Consensus 1313 ~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~W~ 1379 (1463)
++|+.+++||.|||||||||+++||++|++|.|+.+|+.++++||++++.|+++|++|+||||++|+
T Consensus 240 ~~~~~l~~pE~VPFRLT~~~~~~lg~~g~~G~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~DPl~~W~ 306 (307)
T cd05170 240 EKGKSLRIPEKVPFRMTQNIETALGLTGVEGVFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDWT 306 (307)
T ss_pred cccCCCCCCCCCCeeeCHHHHHHhCCCCCchhHHHHHHHHHHHHHcCHHHHHHHHHHHhhCcccccc
Confidence 9998899999999999999999999999999999999999999999999999999999999999995
No 8
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=100.00 E-value=1.2e-66 Score=587.44 Aligned_cols=247 Identities=23% Similarity=0.373 Sum_probs=236.2
Q ss_pred cccccceEEEe-cCCCcceEEEEEeCCCceEeeeeec-CCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEE
Q 000492 1103 FKGLAESVMVM-NGINAPKVVECFGSDGHKYRQLAKS-GNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVP 1180 (1463)
Q Consensus 1103 i~~f~~~~~v~-~s~~~Pk~i~~~gsdG~~y~~L~K~-G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViP 1180 (1463)
|.+|.|.++|+ ++.++||+|+++|+||+.|+||+|. |++|+|+|+||||||++||.+|.+++||++|+|.++||.|||
T Consensus 1 i~rf~p~~~iv~~~~~~pkri~i~gsdG~~y~fLvk~~~~~d~R~d~Ri~Ql~~liN~~l~~~~et~~r~l~i~~y~viP 80 (253)
T cd05163 1 IERFLPTVEIVRGHGYCYRRLTIRGHDGSIYPFLVQYPAARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLVVP 80 (253)
T ss_pred CcccCCeEEEEccCCCcCcEEEEECCCCCEEEEEEecCCchhHHHHHHHHHHHHHHHHHHhcCHHHHhCcccccceeEEE
Confidence 57899999876 6889999999999999999999994 468999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhh--hHHHHHHHHcC
Q 000492 1181 FTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRP--VLHYFFLERFL 1258 (1463)
Q Consensus 1181 Ls~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~p--vl~~~~~~~f~ 1258 (1463)
|++++|||||++++.|+.+++.. |.++|++++.++.| +|++||+++|+
T Consensus 81 Ls~~~gLie~~~~~~tl~~i~~~------------------------------~~~~~~~i~~~~~p~~~l~~~~~~~~~ 130 (253)
T cd05163 81 LSPQIRLVEDDPSYISLQEIYED------------------------------KLEIYNEIQKDMVPDTILKNYILSTFP 130 (253)
T ss_pred cCCccceEEECCCCccHHHHHHH------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHCC
Confidence 99999999999999999987631 67899999998666 99999999999
Q ss_pred CchHHHHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhccccCC-CCCCCCCcccccchhhccc
Q 000492 1259 QPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-KTPERVPFRLTRDIIDGMG 1337 (1463)
Q Consensus 1259 ~~~~w~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~~l-~~pE~VPFRLTrniv~~mG 1337 (1463)
+|++||.+|++||+|+|++||+|||||||||||+|||||..||+|+|||||++|++|+.+ ++||.|||||||||+++||
T Consensus 131 ~~~~~~~~r~~ft~s~A~~s~~gYilglgdRh~~nili~~~tG~v~hiDf~~~f~~~~~~~~~pE~VPFRLT~ni~~~~g 210 (253)
T cd05163 131 TYQDYWLFRKQFTYQLALLSFMTYILSINNRNPDKIFISRDTGNVYQSDLLPSINNNKPLFHNNEPVPFRLTPNIQHLIG 210 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhEEEEcCCCcEEEEeeeeeecCCCcCCCCCCcCCcccCHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999764 8999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000492 1338 VTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1379 (1463)
Q Consensus 1338 ~~g~eG~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~W~ 1379 (1463)
++|+||+|+.+|++++++||++++.|+++|++|+||||++|.
T Consensus 211 ~~g~eG~f~~~~~~~~~~Lr~~~~~l~~~L~~fi~Dpl~~W~ 252 (253)
T cd05163 211 PIGLEGILTSSMMAIARCLTEPEFDLENALQLFIRDELIAWH 252 (253)
T ss_pred CcCcCCcHHHHHHHHHHHHhcCHHHHHHHHHHHHcChhhhhc
Confidence 999999999999999999999999999999999999999995
No 9
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=100.00 E-value=1.8e-66 Score=598.51 Aligned_cols=276 Identities=37% Similarity=0.683 Sum_probs=245.0
Q ss_pred cccccceEEEecCCCcceEEEEEeCCCceEeeeeecCCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEEcC
Q 000492 1103 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1182 (1463)
Q Consensus 1103 i~~f~~~~~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs 1182 (1463)
|.+|.|+|+|++|+++||+|+++|+||+.|+||+|. +||+|||+|+||+|++||.+|+++++|++|+|.++||.|||++
T Consensus 1 I~~f~~~v~v~~s~~~pk~i~~~gsdG~~y~fl~K~-~dDlR~D~r~~ql~~~~n~il~~~~~~~~~~l~~~ty~Vipls 79 (280)
T cd05169 1 ISSFDPVLKVIPSKQRPRRLTIVGSDGKEYKFLLKG-HEDLRLDERVMQLFGLINTLLKNDSETSKRNLSIQTYSVIPLS 79 (280)
T ss_pred CccccCeEEEEeCCCCCeEEEEECCCCCEEEEeecC-CCcchHHHHHHHHHHHHHHHHHhChhhhhcCcceeeccEEecC
Confidence 678999999999999999999999999999999995 6999999999999999999999999999999999999999999
Q ss_pred CCCceeEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHH--HhhhcchHhHHHHHHHHHhhhhh-hHHHHHHHHcCC
Q 000492 1183 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKC--REHMSNVKDKRIAFQEVCENFRP-VLHYFFLERFLQ 1259 (1463)
Q Consensus 1183 ~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~k~~~f~~i~~~~~p-vl~~~~~~~f~~ 1259 (1463)
+++||||||+|+.||.+++.......+.+.......+....+ .+.+ ....|.++|++++++.+| ++++||+..|++
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~~~~i~~~~~~~~l~~~~~~~~~~ 158 (280)
T cd05169 80 PNVGLIGWVPGCDTLHSLIREYRKKRNIPLNLEHRLMELKSAPDYDNL-TLIQKLEVFEYALNNTPGDDLRKILWLKSPS 158 (280)
T ss_pred CCcceEEeCCCCchHHHHHHHHHHHcCCChhHHHHHHHHHhhhhhhhC-CHHHHHHHHHHHHHhCCHHHHHHHHHHhCCC
Confidence 999999999999999999976443322211000000000000 0111 123678999999988776 899999999999
Q ss_pred chHHHHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhccccC-CCCCCCCCcccccchhhcccc
Q 000492 1260 PAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMGV 1338 (1463)
Q Consensus 1260 ~~~w~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~~-l~~pE~VPFRLTrniv~~mG~ 1338 (1463)
|..|+.+|++|++|+|++||+|||||||||||+|||||+.||+++|||||++|++|+. +++||.|||||||||+++||+
T Consensus 159 ~~~w~~~r~~F~~S~A~~Sv~~YilglgDRH~~NIll~~~tG~v~HIDfg~~f~~~~~~~~~pE~VPFRLT~~~~~~lG~ 238 (280)
T cd05169 159 SEAWLERRTNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPFRLTRMLVNALGV 238 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhheeccCCCcceEEEEcCCCCEEEEecHHHHhhccccCCCCCcCCcccCHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999976 689999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCccccc
Q 000492 1339 TGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1380 (1463)
Q Consensus 1339 ~g~eG~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~W~~ 1380 (1463)
+|++|.|+.+|+.++++||++++.|+++|++|+||||++|.+
T Consensus 239 ~g~~G~F~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~W~~ 280 (280)
T cd05169 239 SGIEGTFRTTCEDVMNVLRENKESLMAVLEAFVHDPLLSWRL 280 (280)
T ss_pred CCCCCchHHHHHHHHHHHhcChHHHHHHHHHHHhCccccccC
Confidence 999999999999999999999999999999999999999963
No 10
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=100.00 E-value=1.8e-64 Score=563.97 Aligned_cols=233 Identities=35% Similarity=0.663 Sum_probs=225.3
Q ss_pred cccccceEEEecCCCcceEEEEEeCCCceEeeeeecCCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEEcC
Q 000492 1103 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1182 (1463)
Q Consensus 1103 i~~f~~~~~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs 1182 (1463)
|.+|.|+|+|++|+++||+|+++|+||+.|+||+|. +||+|||+|+||+|++||.+|+++++|++|+|.++||+|+|++
T Consensus 1 i~~~~~~v~v~~S~~~Pkri~~~~~dG~~~~fl~K~-~dDlR~D~r~~Ql~~l~n~~l~~~~~~~~~~l~~~~y~vipls 79 (235)
T cd05172 1 IVGFDERVLVLSSLRKPKRITIRGSDEKEYPFLVKG-GEDLRQDQRIQQLFGVMNNILAQDTACRQRALQLRTYQVIPMT 79 (235)
T ss_pred CCCcCCceEEeccCCCCEEEEEECCCCCEEEEEEEC-CCcccHHHHHHHHHHHHHHHHHhChhhccCCceeecceEEEeC
Confidence 678999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred CCCceeEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchH
Q 000492 1183 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 1262 (1463)
Q Consensus 1183 ~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~f~~~~~ 1262 (1463)
+++||||||+++.||++++.. +++++||++.+++|++
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~-------------------------------------------~~l~~~~~~~~~~~~~ 116 (235)
T cd05172 80 PRFGLIEWLENTTPLKEILKN-------------------------------------------DLLRRALVEMSASPEA 116 (235)
T ss_pred CCCceEEEcCCchhHHHHHhh-------------------------------------------HHHHHHHHHHCCCHHH
Confidence 999999999999999998641 4577899999999999
Q ss_pred HHHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhccccC-CCCCCCCCcccccchhhccccccc
Q 000492 1263 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMGVTGV 1341 (1463)
Q Consensus 1263 w~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~~-l~~pE~VPFRLTrniv~~mG~~g~ 1341 (1463)
|+.+|++|++|+|++|++|||||||||||+|||||+.||+++|||||++|++++. +++||+|||||||||+++||+.|+
T Consensus 117 ~~~~r~~F~~S~A~~S~~~YilglgDRH~~NIli~~~tG~v~HIDfg~~f~~~~~~~~~pE~vPFRLT~~~~~~~g~~g~ 196 (235)
T cd05172 117 FLSLRDHFAKSLAAMCVSHWILGIGDRHLSNFLVDLETGGLVGIDFGHAFGTATQFLPIPELMPFRLTPQFVNLMEPMKA 196 (235)
T ss_pred HHHHHHHHHHHHHHHHHHhheeeccCCCcccEEEECCCCcEEEEeeHhhhccCCccCCCCCCCCeeeCHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999999999999999999999976 999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000492 1342 EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1379 (1463)
Q Consensus 1342 eG~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~W~ 1379 (1463)
+|.|+.+|+.++++||++++.|+++|++|+|||+++|.
T Consensus 197 ~G~f~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~w~ 234 (235)
T cd05172 197 DGLLRSCMVHTLRALRNERHLLLSTMDVFVKEPSLDWK 234 (235)
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHhhCchhhhc
Confidence 99999999999999999999999999999999999995
No 11
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=100.00 E-value=4.2e-63 Score=554.15 Aligned_cols=236 Identities=48% Similarity=0.912 Sum_probs=227.6
Q ss_pred cccccceEEEecCCCcceEEEEEeCCCceEeeeeecCCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEEcC
Q 000492 1103 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1182 (1463)
Q Consensus 1103 i~~f~~~~~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs 1182 (1463)
|.+|.++++|++|+++||+|++.|+||+.|+||+|. +||||||+|+||+|+++|.+|.++++|++|+|.++||+|||++
T Consensus 1 i~~~~~~~~v~~s~~~P~~i~~~~~dG~~~~~l~K~-~dDLRqD~ri~ql~~l~n~il~~~~~~~~~~l~~~~y~Vipl~ 79 (237)
T cd00892 1 ISGFEDEVEILNSLQKPKKITLIGSDGNSYPFLCKP-KDDLRKDARLMEFNTLINRLLSKDPESRRRRLYIRTYAVIPLN 79 (237)
T ss_pred CccccCeEEEEeccCCceEEEEEcCCCCEEEEEEeC-CCcccHHHHHHHHHHHHHHHHHhCchhccCceeeEeceEEEcC
Confidence 578999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred CCCceeEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchH
Q 000492 1183 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 1262 (1463)
Q Consensus 1183 ~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~f~~~~~ 1262 (1463)
+++||||||+|+.||++++.+. .+|++++||.++|++|.+
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~~----------------------------------------~~~~l~~~~~~~~~~~~~ 119 (237)
T cd00892 80 EECGIIEWVPNTATLRSILLEI----------------------------------------YPPVFHEWFLENFPDPSA 119 (237)
T ss_pred CCCceEEECCCCccHHHHHHHh----------------------------------------CCHHHHHHHHHHCcCHHH
Confidence 9999999999999999987531 046889999999999999
Q ss_pred HHHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCcccccchhhcccccccc
Q 000492 1263 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE 1342 (1463)
Q Consensus 1263 w~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG~~g~e 1342 (1463)
|+.+|++|+.|+|++|++|||||||||||+||||++.||+++|||||++|++|+.+++||+|||||||||+++||+.|++
T Consensus 120 ~~~~~~~F~~SlA~~s~~~YilgigDRh~~NIli~~~tG~~~HIDfg~~~~~~~~~~~pe~vPFRLT~~~~~~lg~~g~~ 199 (237)
T cd00892 120 WLKARNAYTRSTAVMSMVGYILGLGDRHGENILFDSNTGDVVHVDFNCLFDKGETLEVPERVPFRLTQNMVDAMGVLGVE 199 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcccEEEEcCCCcEEEEehHhhhcccccCCCCCCCCcccCHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000492 1343 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1379 (1463)
Q Consensus 1343 G~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~W~ 1379 (1463)
|.|+.+|+.++++||++++.|+++|++|+||||++|.
T Consensus 200 g~F~~~~~~~~~~Lr~~~~~l~~~l~~fi~dpl~~w~ 236 (237)
T cd00892 200 GLFRKSCEVTLRLLRSNKETLMSVLETFIHDPLVEWS 236 (237)
T ss_pred CchHHHHHHHHHHHHhCHHHHHHHHHHHhhccchhcc
Confidence 9999999999999999999999999999999999995
No 12
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=100.00 E-value=1.4e-59 Score=521.26 Aligned_cols=222 Identities=49% Similarity=0.878 Sum_probs=215.3
Q ss_pred cccccceEEEecCCCcceEEEEEeCCCceEeeeeecCCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEEcC
Q 000492 1103 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1182 (1463)
Q Consensus 1103 i~~f~~~~~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs 1182 (1463)
|.+|.+.|+|++|+++||+|+++|+||+.|.||+|. +||+|||+|+||+|+++|.+|++++||++|++.++||.|+|++
T Consensus 1 i~~~~~~v~v~~S~~~P~~i~~~~~dG~~~~fl~K~-~dDlR~D~rv~ql~~~~n~il~~~~~~~~~~l~~~~y~vipls 79 (222)
T cd05164 1 IASFDDAVRILGSKQKPKKITLTGSDGKKYLFLVKG-GEDLRQDQRIMQLFQFCNTLLAKDAECRRRKLTIRTYAVIPLN 79 (222)
T ss_pred CccccCeeEEecccCCCEEEEEECCCCCEEEEEEeC-CCcccHHHHHHHHHHHHHHHHHhCchhccCceEeecceEEEcC
Confidence 678999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred CCCceeEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchH
Q 000492 1183 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 1262 (1463)
Q Consensus 1183 ~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~f~~~~~ 1262 (1463)
+++||||||+|+.||+. ++++||+..|+++++
T Consensus 80 ~~~GliE~v~~~~sl~~------------------------------------------------~l~~~~~~~~~~~~~ 111 (222)
T cd05164 80 SRSGLIEWVEGTTTLKP------------------------------------------------VLKKWFWLQFPDPEQ 111 (222)
T ss_pred CCCceEEEcCCcchHHH------------------------------------------------HHHHHHHHHCcCHHH
Confidence 99999999999999973 456678899999999
Q ss_pred HHHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCcccccchhhcccccccc
Q 000492 1263 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE 1342 (1463)
Q Consensus 1263 w~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG~~g~e 1342 (1463)
||.+|++|+.|+|++|++|||||||||||+||||++.||+++|||||++|++|+.+++||.|||||||||+++||+.|++
T Consensus 112 ~~~~r~~F~~SlA~~s~~~YvlglgDRh~~NIli~~~tG~v~hIDf~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~g~~ 191 (222)
T cd05164 112 WFAARKNYTRSTAVMSIVGYILGLGDRHLDNILIDRETGEVVHIDFGCIFEKGKTLPVPELVPFRLTRNIINGMGITGVE 191 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCceEEEECCCCcEEEEccHHhhccCCCCCCCCCCCEEeCHHHHHHhCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHccC
Q 000492 1343 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHD 1373 (1463)
Q Consensus 1343 G~F~~~c~~t~~~LR~~~~~l~~iLe~f~~D 1373 (1463)
|.|+.+|+.++++||++++.|+++|++|+||
T Consensus 192 G~f~~~~~~~~~~Lr~~~~~l~s~l~~fv~d 222 (222)
T cd05164 192 GLFRKICEQTLEVFRKHRDTLIAFLEVFVYD 222 (222)
T ss_pred ChHHHHHHHHHHHHHhCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999997
No 13
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=100.00 E-value=9.9e-55 Score=483.45 Aligned_cols=219 Identities=36% Similarity=0.616 Sum_probs=210.1
Q ss_pred cccccceEEEecCCCcceEEEEEeCCCceEeeeeecCCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEEcC
Q 000492 1103 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1182 (1463)
Q Consensus 1103 i~~f~~~~~v~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs 1182 (1463)
+.+|.+.++|++|+++||+++++|+||+.|+||+|. +||+|||+|++|+|+++|.+|++++ ++++.+++|.|||++
T Consensus 1 ~~~~~~~~~v~~s~~~P~~l~~~~~dg~~~~~l~K~-~ddlR~D~~~~ql~~~~n~il~~~~---~~~l~~~~y~vipls 76 (219)
T cd00142 1 IAIDVKICRIMPSKTRPKKLTLIGADGKEYRILFKN-GDDLRQDERVLQFIRLMNKILKKEL---GLDLFLTTYSVIPLS 76 (219)
T ss_pred CCccCCceEEEcccCCCEEEEEEccCCCEEEEEEeC-CCchhHHHHHHHHHHHHHHHHHhCC---CCCceEEeEEEEEec
Confidence 356889999999999999999999999999999996 5999999999999999999999886 689999999999999
Q ss_pred CCCceeEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchH
Q 000492 1183 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 1262 (1463)
Q Consensus 1183 ~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~f~~~~~ 1262 (1463)
+++||||||+|+.|++ +.+++||...++++++
T Consensus 77 ~~~GlIE~v~~~~sl~------------------------------------------------~~l~~~~~~~~~~~~~ 108 (219)
T cd00142 77 PRSGLIEVVPGSVTLE------------------------------------------------DDLSKWLKRKSPDEDE 108 (219)
T ss_pred CCceEEEEeCCCchhH------------------------------------------------HHHHHHHHHHCcCHHH
Confidence 9999999999999987 3567788999999999
Q ss_pred HHHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCcccccchhhcccccccc
Q 000492 1263 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE 1342 (1463)
Q Consensus 1263 w~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG~~g~e 1342 (1463)
|+.+|++|+.|+|++|++|||||||||||+||||++.||+++|||||++|++++.+..||+|||||||||+++||+.|++
T Consensus 109 ~~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~~G~~~hIDfg~~~~~~~~~~~~e~vPFRLT~~~~~~~g~~~~~ 188 (219)
T cd00142 109 WQEARENFISSLAGYSVAGYILGIGDRHPDNIMIDLDTGKLFHIDFGFIFGKRKKFLGRERVPFRLTPDLVNALGTGGVF 188 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCccEEEECCCCeEEEEeeHHhhCcCcCCCCCCCCCEeccHHHHHHhCCcchh
Confidence 99999999999999999999999999999999999999999999999999999988789999999999999999999999
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHccC
Q 000492 1343 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHD 1373 (1463)
Q Consensus 1343 G~F~~~c~~t~~~LR~~~~~l~~iLe~f~~D 1373 (1463)
|.|+.+|+.++++||+|++.|+++|++|++|
T Consensus 189 g~F~~~~~~~~~~lr~~~~~i~~ll~~~~~~ 219 (219)
T cd00142 189 GPFRSLCVKAMLILRRHAGLLLNLLSLMLRD 219 (219)
T ss_pred hhHHHHHHHHHHHHHhChHHHHHHHHHhccC
Confidence 9999999999999999999999999999987
No 14
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=100.00 E-value=2.3e-53 Score=497.47 Aligned_cols=250 Identities=25% Similarity=0.383 Sum_probs=220.5
Q ss_pred cccccCCCCCCcccCCCcCcccccc-ceEEEecCCCcceEEEEEeCC--CceEeeeeecCCccchhhHHHHHHHHHHHHH
Q 000492 1083 VTATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTF 1159 (1463)
Q Consensus 1083 ~t~~lp~~~~~~y~~~~~~~i~~f~-~~~~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~l 1159 (1463)
....+|++|+. .+.+|. ++++|++|+++|++|++.|+| |+.|.+|+|.| ||||||++++|++++||.+
T Consensus 47 ~~~~lP~~p~~--------~i~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~g-DDLRqD~l~~Ql~~l~~~i 117 (352)
T cd00891 47 QEFTLPLDPRL--------EIKGLIIEKCKVMDSKKKPLWLVFKNADPSGEPIKVIFKVG-DDLRQDMLTLQMIRLMDKI 117 (352)
T ss_pred CCccCCCCCce--------EEEEEeccceEEeccccCCcEEEEEecCCCCCEEEEEeccC-CchhHHHHHHHHHHHHHHH
Confidence 35667877743 345565 569999999999999999999 99999999965 9999999999999999999
Q ss_pred HHhCcccccCCceeecceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHH
Q 000492 1160 LRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQ 1239 (1463)
Q Consensus 1160 L~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~ 1239 (1463)
|+++. .+|.++||+|||+++++||||||+|+.|+++|........+ +|.
T Consensus 118 ~~~~~----ldl~l~~Y~Vip~~~~~GlIE~V~ns~tl~~I~~~~~~~~~---------------------------~~~ 166 (352)
T cd00891 118 WKKEG----LDLRMTPYGCIATGDGVGMIEVVPNSETIAKIQKKAGGVGG---------------------------AFK 166 (352)
T ss_pred HHHCC----CCeeeEEEEEEEccCCceEEEEeCCCccHHHHHHhcCcccc---------------------------ccc
Confidence 99875 78999999999999999999999999999998754221110 111
Q ss_pred HHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhccccC-C
Q 000492 1240 EVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-L 1318 (1463)
Q Consensus 1240 ~i~~~~~pvl~~~~~~~f~~~~~w~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~~-l 1318 (1463)
.+.+++|+...++++..|..+|.+|++|+|+|||+||||||||||++|||||+ +|+++|||||++|+.++. +
T Consensus 167 ------~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysv~~YiLgigDRH~~NILi~~-~G~~~HIDFG~ilg~~~~~~ 239 (352)
T cd00891 167 ------DNPLMNWLKKKNKGEEDYEKAVENFTYSCAGYCVATYVLGIGDRHNDNIMLTK-TGHLFHIDFGHFLGNFKKKF 239 (352)
T ss_pred ------cchHHHHHHHhCCCHHHHHHHHHHHhhhHHHHHHHHHHccccccCCCceEECC-CCCEEEEehHHhhccCCccC
Confidence 12467899999999999999999999999999999999999999999999995 999999999999997643 4
Q ss_pred C-CCCCCCcccccchhhcccccccc--chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000492 1319 K-TPERVPFRLTRDIIDGMGVTGVE--GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1379 (1463)
Q Consensus 1319 ~-~pE~VPFRLTrniv~~mG~~g~e--G~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~W~ 1379 (1463)
+ .||+||||||++|+++||+.|.+ |.|+.+|+.++.+||+|.+.|++++++|+++++.+|.
T Consensus 240 ~~~~E~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~l~~lm~~~~lp~~~ 303 (352)
T cd00891 240 GIKRERAPFVLTPDMAYVMGGGDSEKFQRFEDLCCKAYNILRKHGNLFINLFSLMLSAGIPELQ 303 (352)
T ss_pred CCCCCCCCeeecHHHHHHhCCCCCcccchHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCCccC
Confidence 4 69999999999999999999976 9999999999999999999999999999999998874
No 15
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=100.00 E-value=5.1e-53 Score=493.43 Aligned_cols=287 Identities=23% Similarity=0.436 Sum_probs=246.3
Q ss_pred ccccCCCCCCcccCCCcCccccc-cceEEEecCCCcceEEEEEeCCC---ceEeeeeecCCccchhhHHHHHHHHHHHHH
Q 000492 1084 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDG---HKYRQLAKSGNDDLRQDAVMEQFFGLVNTF 1159 (1463)
Q Consensus 1084 t~~lp~~~~~~y~~~~~~~i~~f-~~~~~v~~s~~~Pk~i~~~gsdG---~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~l 1159 (1463)
...+|++|+. .|.++ .++++|++|+++|+++++.|+|| +.|.+|+|.| ||||||+++||+|++||.+
T Consensus 52 ~~~lP~dp~~--------~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~~~~i~K~g-DDLRqD~l~~Ql~~lm~~i 122 (350)
T cd00896 52 PIPLPLDPSI--------EITGIIPEESSVFKSALMPLKLTFKTEKGNEEGEYPVIFKVG-DDLRQDQLVIQIISLMDRL 122 (350)
T ss_pred CCcCCCCCCe--------EEEEEecCceEEeccccCceEEEEEeCCCCCCceEEEEecCC-cchhHhHHHHHHHHHHHHH
Confidence 4567877743 23444 46799999999999999999999 9999999965 9999999999999999999
Q ss_pred HHhCcccccCCceeecceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHH
Q 000492 1160 LRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQ 1239 (1463)
Q Consensus 1160 L~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~ 1239 (1463)
|+++. ++|.++||+|||+++++||||||+ +.|+++++....
T Consensus 123 l~~~~----ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~~i~~~~~---------------------------------- 163 (350)
T cd00896 123 LKKEN----LDLKLTPYKVLATSPTDGLVEFIP-SVTLASILKKYG---------------------------------- 163 (350)
T ss_pred HHhCC----CCceeEEEEEEEcCCCCcceEEEe-cccHHHHHHHHH----------------------------------
Confidence 99875 799999999999999999999999 999999864210
Q ss_pred HHHhhhhhhHHHHHHHHcCCchHH----HHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhccc
Q 000492 1240 EVCENFRPVLHYFFLERFLQPAYW----FEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQG 1315 (1463)
Q Consensus 1240 ~i~~~~~pvl~~~~~~~f~~~~~w----~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g 1315 (1463)
.+.+|+...++++..| ..+|.+|++|+|+|||+||||||||||++||||+. +|+++|||||++|+++
T Consensus 164 --------~l~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLGigDRH~~NILi~~-~G~~~HIDFG~ilg~~ 234 (350)
T cd00896 164 --------GILNYLRKLNPDDGGPLGISPEVMDTFVKSCAGYCVITYILGVGDRHLDNLLLTK-DGKLFHIDFGYILGRD 234 (350)
T ss_pred --------HHHHHHHHHCCCccccccchHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEcC-CCCEEEEEhHHhhCCC
Confidence 0456777888888774 68999999999999999999999999999999995 9999999999999987
Q ss_pred cCCCCCCCCCcccccchhhccccccccc--hhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhHHHhhhhccc
Q 000492 1316 LMLKTPERVPFRLTRDIIDGMGVTGVEG--VFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMD 1393 (1463)
Q Consensus 1316 ~~l~~pE~VPFRLTrniv~~mG~~g~eG--~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~W~~~~~~~~~~~~~~~ 1393 (1463)
+ .|++||||||++|+++||+.|.+| .|+..|+.++.+||+|.+.|++++++|+++|+.+|...
T Consensus 235 p---~~~~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~lR~~~~~il~l~~lm~~~~ip~~~~~------------ 299 (350)
T cd00896 235 P---KPFPPPMKLCKEMVEAMGGAQSEGYQEFKSYCCEAYNILRKSANLILNLFSLMVDANIPDIALD------------ 299 (350)
T ss_pred C---CCCCCCeeccHHHHHHhCCCCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHcCCCCcccccC------------
Confidence 4 588899999999999999999999 99999999999999999999999999999999877432
Q ss_pred ccccCCCCCCccccccchhHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHHhcCc--hhhhhhCcccccCC
Q 000492 1394 DDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDP--ERFCLMFPGWGAWL 1463 (1463)
Q Consensus 1394 ~~~~~~~~~~~~~~~~n~~a~~~l~rv~~kL~g~~~~~~lsv~~qV~~LI~~Atd~--~nL~~m~~gW~Pwl 1463 (1463)
...++..+++|+.-.... --....+..||++|.+. .++.-+++.|+.||
T Consensus 300 -------------------~~~~i~~l~~rf~l~~s~--~ea~~~~~~lI~~s~~~~~t~~~d~~h~~aq~~ 350 (350)
T cd00896 300 -------------------PDKAILKVQEKFRLDLSD--EEAIKHFQNLINDSVNALFPVVVDRLHAWAQYW 350 (350)
T ss_pred -------------------HHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 123577888888642211 12456799999999887 47888888888765
No 16
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=100.00 E-value=2e-52 Score=488.28 Aligned_cols=248 Identities=20% Similarity=0.347 Sum_probs=216.3
Q ss_pred ccccCCCCCCcccCCCcCcccccc-ceEEEecCCCcceEEEEEeCC--CceEeeeeecCCccchhhHHHHHHHHHHHHHH
Q 000492 1084 TATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1160 (1463)
Q Consensus 1084 t~~lp~~~~~~y~~~~~~~i~~f~-~~~~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL 1160 (1463)
...+|++|+.. +.++. ++++|++|+++|++|++.|+| |+.|.+|+|.| ||||||+++||++++||++|
T Consensus 48 ~~~lP~~p~~~--------~~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~g-DDLRQD~l~~Qli~lm~~i~ 118 (353)
T cd05166 48 KCRLPLNPALD--------VKGIDVRECSYFNSNALPLKISFVNADPMGENISVIFKAG-DDLRQDMLVLQMINIMDKIW 118 (353)
T ss_pred CCccCCCCceE--------EEeEEcCceEEeccccCceEEEEEecCCCCCEEEEEEeCC-CcccHHHHHHHHHHHHHHHH
Confidence 45577777432 33333 678999999999999999999 99999999965 99999999999999999999
Q ss_pred HhCcccccCCceeecceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHH
Q 000492 1161 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1240 (1463)
Q Consensus 1161 ~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~~ 1240 (1463)
+++. .+|.+++|.|+|+++++||||||+|+.|+++|....... .. |.
T Consensus 119 ~~~~----ldL~l~~Y~vip~~~~~GlIE~V~ns~tl~~I~~~~g~~----~~------------------------~~- 165 (353)
T cd05166 119 LQEG----LDLRMITFRCLSTGYDRGMVELVPDAETLRKIQVEEGLT----GS------------------------FK- 165 (353)
T ss_pred HhCC----CCceeEEEEEEEcCCCcceEEEeCCchhHHHHHHHhCcc----cc------------------------cc-
Confidence 9875 689999999999999999999999999999986532110 00 00
Q ss_pred HHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhccccCCC-
Q 000492 1241 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLK- 1319 (1463)
Q Consensus 1241 i~~~~~pvl~~~~~~~f~~~~~w~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~~l~- 1319 (1463)
.+.+++||.+.++++..|..+|.+|++|+|+|||+||||||||||++||||| .+|+++|||||++|++++...
T Consensus 166 -----~~~l~~~l~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLgigDRH~~NILl~-~~G~l~HIDFG~~lg~~~~~~~ 239 (353)
T cd05166 166 -----DRPIAKWLMKHNPSELEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLT-KSGHMFHIDFGKFLGHAQMFGG 239 (353)
T ss_pred -----chhHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEEeeHHhccccccccc
Confidence 1257789999999999999999999999999999999999999999999999 599999999999999876432
Q ss_pred -CCCCCCcccccchhhccccc----cccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000492 1320 -TPERVPFRLTRDIIDGMGVT----GVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1379 (1463)
Q Consensus 1320 -~pE~VPFRLTrniv~~mG~~----g~eG~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~W~ 1379 (1463)
.||+||||||++|+++||.. +..|.|+..|+.++.+||+|.+.|++++++|+++++.+|.
T Consensus 240 ~~~E~~PFrLT~emv~~~ggg~~~s~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~ 304 (353)
T cd05166 240 FKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELS 304 (353)
T ss_pred CCCCCCCccccHHHHHHhcCCCCCcchHhHHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccC
Confidence 48999999999999999754 3457999999999999999999999999999999999995
No 17
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=2.4e-51 Score=476.31 Aligned_cols=248 Identities=20% Similarity=0.341 Sum_probs=216.8
Q ss_pred ccccCCCCCCcccCCCcCccccccc-eEEEecCCCcceEEEEEeCC--CceEeeeeecCCccchhhHHHHHHHHHHHHHH
Q 000492 1084 TATVPIDCTCQYNEGSFPYFKGLAE-SVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1160 (1463)
Q Consensus 1084 t~~lp~~~~~~y~~~~~~~i~~f~~-~~~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL 1160 (1463)
+..+|++|.. .|.+|.+ +++|++|+++|++|++.++| |+.|.+|+|.| ||||||++++|++++||.+|
T Consensus 49 ~~~lPl~P~~--------~i~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~g-DDLRQD~l~lQli~lmd~i~ 119 (354)
T cd05177 49 SCCLPLNPAL--------RVKGIDADACSYFTSNAAPLKISFINANPLAKNISIIFKTG-DDLRQDMLVLQIVRVMDNIW 119 (354)
T ss_pred CCccCCCCCe--------EEEEEecCccEEehhhcCCCEEEEEecCCCCCeEEEEEeCC-CcccHHHHHHHHHHHHHHHH
Confidence 4567887743 4556664 68999999999999999999 89999999975 99999999999999999999
Q ss_pred HhCcccccCCceeecceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHH
Q 000492 1161 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1240 (1463)
Q Consensus 1161 ~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~~ 1240 (1463)
+++. .+|.+++|+|+|+++++|+||||+|+.|+++|....... + . |.
T Consensus 120 ~~~~----ldl~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~~~-~--------~-------------------~~- 166 (354)
T cd05177 120 LQEG----LDMQMIIYRCLSTGKTQGLVQMVPDAVTLAKIHRESGLI-G--------P-------------------LK- 166 (354)
T ss_pred HHcC----CCceEEEEEEEecCCCceEEEEeCChHhHHHHHHhhCCC-c--------c-------------------cc-
Confidence 9875 789999999999999999999999999999987532100 0 0 00
Q ss_pred HHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhccccCCC-
Q 000492 1241 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLK- 1319 (1463)
Q Consensus 1241 i~~~~~pvl~~~~~~~f~~~~~w~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~~l~- 1319 (1463)
.+.+.+||...++++..|..+|.+|++|+|+|||+||||||||||++||||+ .||+++|||||++|++++.+.
T Consensus 167 -----~~~l~~~~~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRHn~NILi~-~~G~~~HIDFG~ilg~~~~~~~ 240 (354)
T cd05177 167 -----ENTIEKWFHMHNKLKEDYDKAVRNFFHSCAGWCVVTFILGVCDRHNDNIMLT-HSGHMFHIDFGKFLGHAQTFGS 240 (354)
T ss_pred -----hhhHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCceeEc-CCCCEEEEehHHhcCCCccccC
Confidence 1246778888899999999999999999999999999999999999999999 599999999999999987643
Q ss_pred -CCCCCCcccccchhhccccccccc----hhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000492 1320 -TPERVPFRLTRDIIDGMGVTGVEG----VFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1379 (1463)
Q Consensus 1320 -~pE~VPFRLTrniv~~mG~~g~eG----~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~W~ 1379 (1463)
.||+||||||++|+++||..|.++ .|+..|..++.+||+|.+.|++++++|+++|+.+|.
T Consensus 241 ~~~E~~PF~LT~emv~~~~~GG~~s~~f~~F~~~c~~a~~~lR~~~~~il~l~~lm~~s~iP~~~ 305 (354)
T cd05177 241 IKRDRAPFIFTSEMEYFITEGGKKPQRFQRFVELCCRAYNIVRKHSQLLLNLLEMMLHAGLPELK 305 (354)
T ss_pred CCcCCCCeeccHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccC
Confidence 489999999999998776656553 699999999999999999999999999999999985
No 18
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=100.00 E-value=3.1e-51 Score=477.32 Aligned_cols=250 Identities=23% Similarity=0.368 Sum_probs=216.9
Q ss_pred ccccCCCCCCcccCCCcCccccc-cceEEEecCCCcceEEEEEeCC-----CceEeeeeecCCccchhhHHHHHHHHHHH
Q 000492 1084 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSD-----GHKYRQLAKSGNDDLRQDAVMEQFFGLVN 1157 (1463)
Q Consensus 1084 t~~lp~~~~~~y~~~~~~~i~~f-~~~~~v~~s~~~Pk~i~~~gsd-----G~~y~~L~K~G~dDlRqD~r~~Qlf~l~N 1157 (1463)
...+|++|+.. +.++ .++++|++|+++|++|++.++| |+.|.+|+|.| ||||||++++|+|++||
T Consensus 53 ~~~lPl~P~~~--------v~~i~~~~~~v~~Sk~~P~~l~f~~~d~~~~~g~~~~~IfK~g-DDLRQD~l~lQli~lm~ 123 (366)
T cd05165 53 SFQSPLNPSLK--------LGELRIEKCKVMDSKKKPLWLVFENADPTALSNENVGIIFKNG-DDLRQDMLTLQILRIMD 123 (366)
T ss_pred cCCCCCCCcee--------EeeeecCceEEehhhcCCcEEEEEccCcccccCCceeEEEecC-CcccHHHHHHHHHHHHH
Confidence 34678777532 3333 3468999999999999999998 69999999965 99999999999999999
Q ss_pred HHHHhCcccccCCceeecceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHH
Q 000492 1158 TFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIA 1237 (1463)
Q Consensus 1158 ~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~ 1237 (1463)
.+|+++. .+|.+++|+|+|+++++|+||||+|+.|+++|........ . ..
T Consensus 124 ~i~~~~~----ldL~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~~~~--~------------------------~~ 173 (366)
T cd05165 124 SIWKEEG----LDLRMLPYGCLSTGDKIGLIEVVRDSTTIANIQQETGGNA--T------------------------AA 173 (366)
T ss_pred HHHHhCC----CCceeEEEEEEEecCCceEEEEeCCchhHHHHHHhccccc--c------------------------cc
Confidence 9999875 7899999999999999999999999999999875321100 0 00
Q ss_pred HHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhcccc-
Q 000492 1238 FQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL- 1316 (1463)
Q Consensus 1238 f~~i~~~~~pvl~~~~~~~f~~~~~w~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~- 1316 (1463)
|. .+.+.+|+.+.++++..|..+|.+|++|+|+|||+||||||||||++|||||+ ||+++|||||++|+.++
T Consensus 174 f~------~~~l~~wl~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRH~~NILi~~-~G~l~HIDFG~ilg~~~~ 246 (366)
T cd05165 174 FK------KEALLHWLKEKNPTEEKLDAAIEEFTLSCAGYCVATFVLGIGDRHNDNIMVKE-TGQLFHIDFGHILGNYKS 246 (366)
T ss_pred cC------cHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcceEEcC-CCCEEEEehHHhhccCCc
Confidence 10 12567899888888899999999999999999999999999999999999996 99999999999999875
Q ss_pred CCC-CCCCCCcccccchhhcccccccc------chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000492 1317 MLK-TPERVPFRLTRDIIDGMGVTGVE------GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1379 (1463)
Q Consensus 1317 ~l~-~pE~VPFRLTrniv~~mG~~g~e------G~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~W~ 1379 (1463)
.++ .||+||||||++|+++||+.|.+ |.|+.+|+.++.+||++.+.|++++++|+..++.++.
T Consensus 247 ~~~i~~E~~PFkLT~emv~~mg~~~~~~~s~~f~~F~~~c~~a~~~LR~~~~~il~l~~lM~~s~ip~~~ 316 (366)
T cd05165 247 KFGINRERVPFVLTPDFVHVIGRGKKDNTSEHFQRFQDLCEKAYLALRRHGNLLIILFSMMLMSGLPELT 316 (366)
T ss_pred cCCCCCCCCCeeecHHHHHHhcccCCcCCChhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCcccC
Confidence 355 59999999999999999987776 8999999999999999999999999999999888774
No 19
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=100.00 E-value=8.4e-52 Score=471.72 Aligned_cols=268 Identities=21% Similarity=0.332 Sum_probs=227.8
Q ss_pred CCCcceEEEEEeCCCc--eEeeeeecCCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEEcCCCCceeEEcC
Q 000492 1115 GINAPKVVECFGSDGH--KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVD 1192 (1463)
Q Consensus 1115 s~~~Pk~i~~~gsdG~--~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~ 1192 (1463)
-++|||+.+..|+.+. .|.+|+|. +||||||+++||+|++||.+|+++. ++|.++||+|+|+++++||||||+
T Consensus 14 ~~~r~r~~s~~~~~~~~~~~~~i~K~-gDDLRqD~l~~Ql~~~~~~i~~~~~----l~l~l~~Y~vip~~~~~GlIE~V~ 88 (293)
T cd05168 14 KKERIRKSSPYGHLKSWDLRSVIVKT-GDDLRQELLAMQLIQQFDRIFKEEG----LPLWLRPYEILVTSSNSGLIETIP 88 (293)
T ss_pred HHHHhhhcCccCcCCCCCEEEEEEeC-CCCccHHHHHHHHHHHHHHHHHHCC----CCceeeeEEEEEccCCceeEEEeC
Confidence 3578899989988765 89999996 5999999999999999999999864 789999999999999999999999
Q ss_pred CCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCc-hHHHHHHHHHH
Q 000492 1193 GTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQP-AYWFEKRLAYT 1271 (1463)
Q Consensus 1193 ~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~f~~~-~~w~~~R~~ft 1271 (1463)
|+.|+++|...... ..|.+++||.+.|++| +.|+.+|.+|+
T Consensus 89 ns~tl~~i~k~~~~--------------------------------------~~~~l~~~f~~~~~~~~~~~~~a~~nF~ 130 (293)
T cd05168 89 DTVSIDSLKKKLTS--------------------------------------KFKSLLDFFKKTFGDPSERFREAQKNFI 130 (293)
T ss_pred CchhHHHHHHHhcc--------------------------------------CCchHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 99999997643110 1356788999999885 57899999999
Q ss_pred HhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCcccccchhhcccccccc--chhHHHH
Q 000492 1272 RSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE--GVFRRCC 1349 (1463)
Q Consensus 1272 ~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG~~g~e--G~F~~~c 1349 (1463)
+|+|+|||+||||||||||++||||++ +|+++|||||++|+.++....||+|||||||+|+++||+.|.+ |.|+.+|
T Consensus 131 ~S~A~ySvv~YvLGigDRH~~NILi~~-~G~liHIDFG~~fg~~~~~~~~E~vPFrLT~~mv~~mGg~~s~~~~~F~~~c 209 (293)
T cd05168 131 ESLAGYSLICYLLQIKDRHNGNILIDN-DGHIIHIDFGFMLSNSPGNVGFETAPFKLTQEYIEVMGGVNSDLFNYFKKLF 209 (293)
T ss_pred HHHHHHHHHHHHhhccccCCCceEEcC-CCCEEEEehHHhhcccccCCCCCCCCEEecHHHHHHhCCCCCchhHHHHHHH
Confidence 999999999999999999999999997 9999999999999999877789999999999999999999887 8999999
Q ss_pred HHHHHHHhcChHHHHHHHHHHccCCCc-ccccChhHHHhhhhcccccccCCCCCCccccccchhHHHHHHHHHhhcCCCC
Q 000492 1350 EKTLSVMRTNKEALLTIVEVFIHDPLY-KWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYE 1428 (1463)
Q Consensus 1350 ~~t~~~LR~~~~~l~~iLe~f~~DpL~-~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~rv~~kL~g~~ 1428 (1463)
+.++.+||++++.|++++++|+++|-+ +... ....+..+++|+....
T Consensus 210 ~~~~~~LR~~~~~il~ll~~m~~~~~lp~f~~--------------------------------~~~~i~~l~~r~~l~~ 257 (293)
T cd05168 210 LKGFMALRKHVDRIILLVEIMQSDSKLPCFKA--------------------------------GEFTIQQLRDRFMLNL 257 (293)
T ss_pred HHHHHHHHhchHHHHHHHHHHccCCCCccccC--------------------------------chHHHHHHHHHhCCCC
Confidence 999999999999999999999999533 2210 1124667777775421
Q ss_pred CCCccCHHHHHHHHHHHhcCchhhhhhCccccc
Q 000492 1429 GGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGA 1461 (1463)
Q Consensus 1429 ~~~~lsv~~qV~~LI~~Atd~~nL~~m~~gW~P 1461 (1463)
....+..++..||++|.+. .-.++|-.|+-
T Consensus 258 --se~~a~~~~~~lI~~s~~~-~~t~~yD~~q~ 287 (293)
T cd05168 258 --TEEQLEVFVDELINQSLDN-WRTRLYDKFQY 287 (293)
T ss_pred --CHHHHHHHHHHHHHHHHhc-hhHHHHHHHHH
Confidence 1234678999999999984 55666666553
No 20
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=100.00 E-value=2.8e-51 Score=450.54 Aligned_cols=198 Identities=39% Similarity=0.692 Sum_probs=189.7
Q ss_pred eeeeecCCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCC
Q 000492 1133 RQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHG 1212 (1463)
Q Consensus 1133 ~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~tl~~il~~~~~~~~~~~ 1212 (1463)
.|++|. .||+|||+|++|+|+++|.+|++++|+++|++.++||.|+|+++++||||||+|+.|++++
T Consensus 1 ~~~~K~-~dDlR~D~~~~ql~~~~n~il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~sl~~i------------ 67 (202)
T smart00146 1 AVIFKG-GDDLRQDERVLQLLRLMNKILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNSTTLHQI------------ 67 (202)
T ss_pred CeeecC-CCcccHHHHHHHHHHHHHHHHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCchhHHHH------------
Confidence 378995 5999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCC
Q 000492 1213 RYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAM 1292 (1463)
Q Consensus 1213 ~~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~f~~~~~w~~~R~~ft~S~A~~S~vgyILGLGDRH~~ 1292 (1463)
+++||.+.|++|..|+.+|++|++|+|++|++|||||||||||+
T Consensus 68 ------------------------------------l~~~~~~~~~~~~~~~~~~~~F~~SlA~~s~~~YilglgDRh~~ 111 (202)
T smart00146 68 ------------------------------------LYDWFKKKFPDPEDYFEARKNFTRSCAGYSVITYILGLGDRHND 111 (202)
T ss_pred ------------------------------------HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 46788999999999999999999999999999999999999999
Q ss_pred eEEEecCCCcEEEeecchhhccccCCCCC-CCCCcccccchhhccccccccchhHHHHHHHHHHHhcChHHHHHHHHHHc
Q 000492 1293 NILIDQATAEVVHIDLGVAFEQGLMLKTP-ERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFI 1371 (1463)
Q Consensus 1293 NILld~~tG~vvhIDfg~~F~~g~~l~~p-E~VPFRLTrniv~~mG~~g~eG~F~~~c~~t~~~LR~~~~~l~~iLe~f~ 1371 (1463)
||||+ +||+++|||||++|++++.+..| |.|||||||||+++||+.|++|.|+.+|+.++++||++++.|+++|++|+
T Consensus 112 NIli~-~~G~v~hIDfg~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~~~~g~F~~~~~~~~~~Lr~~~~~i~~~l~~~~ 190 (202)
T smart00146 112 NIMLD-KTGHLFHIDFGFILGNGPKLFGFPERVPFRLTPEMVDVMGDSGYFGLFRSLCERALRALRKNSNLIMSLLELML 190 (202)
T ss_pred cEEEe-CCCCEEEEechhhhCccccCCCCCCCCCeecCHHHHHHhCCCcccchHHHHHHHHHHHHHcCHHHHHHHHHHHc
Confidence 99999 79999999999999999876555 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccc
Q 000492 1372 HDPLYKWAL 1380 (1463)
Q Consensus 1372 ~DpL~~W~~ 1380 (1463)
+||+.+|..
T Consensus 191 ~d~l~~~~~ 199 (202)
T smart00146 191 YDGLPDWRS 199 (202)
T ss_pred CCCChhhcC
Confidence 999999974
No 21
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=5.5e-49 Score=456.70 Aligned_cols=249 Identities=25% Similarity=0.385 Sum_probs=214.3
Q ss_pred cccccCCCCCCcccCCCcCccccc-cceEEEecCCCcceEEEEEeCCC-----ceEeeeeecCCccchhhHHHHHHHHHH
Q 000492 1083 VTATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDG-----HKYRQLAKSGNDDLRQDAVMEQFFGLV 1156 (1463)
Q Consensus 1083 ~t~~lp~~~~~~y~~~~~~~i~~f-~~~~~v~~s~~~Pk~i~~~gsdG-----~~y~~L~K~G~dDlRqD~r~~Qlf~l~ 1156 (1463)
....+|++|+.. +.++ .++++|++|+++|.++++.+.|| ..|.+|+|.| ||||||++++|++++|
T Consensus 53 ~~~~lPl~P~~~--------~~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~IfK~G-DDLRQD~l~lQli~lm 123 (365)
T cd00894 53 ESFRVPYDPGLR--------AGALVIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHG-DDLRQDMLILQILRIM 123 (365)
T ss_pred CCCCCCCCCceE--------EEEEEcCceEEEcccCCceEEEEECCCCCccCCCceeEEEeCC-CcccHHHHHHHHHHHH
Confidence 356788888532 2333 56789999999999999999886 5799999975 9999999999999999
Q ss_pred HHHHHhCcccccCCceeecceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHH
Q 000492 1157 NTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRI 1236 (1463)
Q Consensus 1157 N~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~ 1236 (1463)
|.+|+++. ++|++++|+|+|+++++|+||||+|+.|+++|........+
T Consensus 124 d~i~~~~~----ldL~l~pY~vi~tg~~~GlIE~V~ns~tl~~I~~~~~~~~~--------------------------- 172 (365)
T cd00894 124 ESIWETES----LDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTG--------------------------- 172 (365)
T ss_pred HHHHHHcC----CCeEEEEEEEEEecCCceEEEEcCCchhHHHHHHhcccccc---------------------------
Confidence 99998764 89999999999999999999999999999998753111000
Q ss_pred HHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhcccc
Q 000492 1237 AFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL 1316 (1463)
Q Consensus 1237 ~f~~i~~~~~pvl~~~~~~~f~~~~~w~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~ 1316 (1463)
.|. .+.+.+||.+.+++++.|..++.+|++|+|+||++||||||||||++||||+. +|++||||||++|++++
T Consensus 173 ~~k------~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLGIgDRHndNImi~~-~G~lfHIDFG~ilg~~~ 245 (365)
T cd00894 173 AFK------DEVLSHWLKEKCPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMITE-TGNLFHIDFGHILGNYK 245 (365)
T ss_pred ccc------chhHHHHHHHhCCCHHHHHHHHHHHHHHhHHHHHHHHhccccCccccceeEcC-CCCEEEEeeHHhhCCCC
Confidence 000 12577899999999999999999999999999999999999999999999995 99999999999999886
Q ss_pred C-CC-CCCCCCcccccchhhcccccccc-----chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCccc
Q 000492 1317 M-LK-TPERVPFRLTRDIIDGMGVTGVE-----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKW 1378 (1463)
Q Consensus 1317 ~-l~-~pE~VPFRLTrniv~~mG~~g~e-----G~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~W 1378 (1463)
. +. .||+||||||++|+++||+.|.+ +.|+..|+.++.+||++.+.|++++++|+...+.+.
T Consensus 246 ~~~gi~~E~~PFkLT~e~v~vmg~~gg~~s~~f~~F~~~c~~a~~~LRk~~~lil~L~~lM~~sgip~l 314 (365)
T cd00894 246 SFLGINKERVPFVLTPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQL 314 (365)
T ss_pred ccCCCCCCCCCeeecHHHHHHhCccCCcCChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccc
Confidence 5 33 49999999999999999988765 469999999999999999999999999987655543
No 22
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=5e-49 Score=456.48 Aligned_cols=249 Identities=22% Similarity=0.330 Sum_probs=206.9
Q ss_pred cccCCCCCCcccCCCcCccccccceEEEecCCCcceEEEEEeCC--CceEeeeeecCCccchhhHHHHHHHHHHHHHHHh
Q 000492 1085 ATVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRN 1162 (1463)
Q Consensus 1085 ~~lp~~~~~~y~~~~~~~i~~f~~~~~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~ 1162 (1463)
..+|++|+... ..-+.++++|++|+++|++|++.+.| |+.|.+|+|.| ||||||++++|+|++||.+|++
T Consensus 53 ~~lPl~p~~~~-------~~~~~~~~~v~~Sk~~Pl~l~f~~~~~~g~~~~~IfK~g-DDLRQD~l~~Qli~lmd~i~k~ 124 (361)
T cd05174 53 LQSPLSPSIIL-------CEVCVDQCTFMDSKMKPLWIMYKNEEAGGGSVGIIFKNG-DDLRQDMLTLQMIQLMDVLWKQ 124 (361)
T ss_pred CCCCCCCceEE-------EEEEcCcEEEEeccCCceEEEEeecCCCCCEEEEEEeCC-CchhHHHHHHHHHHHHHHHHHH
Confidence 45788875422 23356889999999999999999976 99999999964 9999999999999999999998
Q ss_pred CcccccCCceeecceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHH
Q 000492 1163 HRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVC 1242 (1463)
Q Consensus 1163 ~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~~i~ 1242 (1463)
+. ++|.+++|+|+|+++++||||||+|+.|+++|....... +. ...|+
T Consensus 125 ~~----ldL~l~pY~vi~tg~~~GlIE~V~ns~Tl~~I~~~~~~~-~~------------------------~~~f~--- 172 (361)
T cd05174 125 EG----LDLRMTPYGCLSTGDKTGLIEVVKNSDTIANIQLNKSNM-AA------------------------TAAFN--- 172 (361)
T ss_pred CC----CCeeeEEEEEEEecCCceEEEEeCCchhHHHHHHhhccc-ch------------------------hcccc---
Confidence 75 899999999999999999999999999999986531100 00 00111
Q ss_pred hhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhcccc--CCCC
Q 000492 1243 ENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL--MLKT 1320 (1463)
Q Consensus 1243 ~~~~pvl~~~~~~~f~~~~~w~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~--~l~~ 1320 (1463)
.+.+.+||.+.+++ +.|..++.+|++|+|+|||+||||||||||++||||++ +|+++|||||++|+..+ ....
T Consensus 173 ---~~~l~~~l~~~~~~-~~~~~A~~nF~~S~AgysVvtYiLGIGDRHn~NILi~~-~G~l~HIDFG~ilg~~~~~~~~~ 247 (361)
T cd05174 173 ---KDALLNWLKSKNPG-DALDQAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRE-SGQLFHIDFGHFLGNFKTKFGIN 247 (361)
T ss_pred ---chHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHHHHHHhcccCcCccceeEcC-CCCEEEEehHHhhcCCcccCCCC
Confidence 13567788777655 34556799999999999999999999999999999995 99999999999999753 3457
Q ss_pred CCCCCcccccchhhccccccc-----cchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCccc
Q 000492 1321 PERVPFRLTRDIIDGMGVTGV-----EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKW 1378 (1463)
Q Consensus 1321 pE~VPFRLTrniv~~mG~~g~-----eG~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~W 1378 (1463)
||+||||||++|+++||..|. .|.|+.+|+.++.+||+|.+.|++++++|+...+.+.
T Consensus 248 ~E~vPFkLT~e~v~vmg~G~~~~s~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~~sgip~~ 310 (361)
T cd05174 248 RERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCEQAYKILRRHGTLFLHLFALMKAAGLPEL 310 (361)
T ss_pred CCCCCeeccHHHHHHHccCCCCCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCcc
Confidence 999999999999999974322 2689999999999999999999999999986655543
No 23
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=1.7e-48 Score=450.08 Aligned_cols=247 Identities=19% Similarity=0.314 Sum_probs=209.2
Q ss_pred ccccCCCCCCcccCCCcCccccc-cceEEEecCCCcceEEEEEeCC--CceEeeeeecCCccchhhHHHHHHHHHHHHHH
Q 000492 1084 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1160 (1463)
Q Consensus 1084 t~~lp~~~~~~y~~~~~~~i~~f-~~~~~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL 1160 (1463)
...+|++|.... .++ .+.++|++|+++|+++++.++| |+.|.+|+|.| ||||||++++|++++||++|
T Consensus 48 ~~~lPl~p~~~~--------~~~~~~~c~v~~S~~~Pl~l~f~~~d~~g~~~~~ifK~g-DDLRQD~l~lQli~lmd~i~ 118 (353)
T cd05176 48 KCRLPLSPSLVA--------KELNIKVCSFFSSNAVPLKIALVNADPLGEEINVMFKVG-EDLRQDMLALQMIKIMDKIW 118 (353)
T ss_pred CCCCCCCcceeE--------ccEehheeEEecccCCceEEEEEccCCCCCEEEEEEeCC-CCccHHHHHHHHHHHHHHHH
Confidence 456888884321 222 3458999999999999999999 99999999975 99999999999999999999
Q ss_pred HhCcccccCCceeecceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHH
Q 000492 1161 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1240 (1463)
Q Consensus 1161 ~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~~ 1240 (1463)
++.. .+|.+++|+|+|+++++|+||||||+.|+++|...... ...+.
T Consensus 119 ~~~~----ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~~~----~~~~~------------------------- 165 (353)
T cd05176 119 LQEG----LDLRMVIFKCLSTGKDRGMVELVPASETLRKIQVEYGV----TGSFK------------------------- 165 (353)
T ss_pred HHCC----CCeEEEEEEEEEcCCCceEEEEeCCcHhHHHHHHHhCc----CCccc-------------------------
Confidence 9765 78999999999999999999999999999998753211 00000
Q ss_pred HHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhccccCC--
Q 000492 1241 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-- 1318 (1463)
Q Consensus 1241 i~~~~~pvl~~~~~~~f~~~~~w~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~~l-- 1318 (1463)
...+.+|+....+++..|..+|.+|++|+|+|||+||||||||||++||||+ .+|+++|||||++|+.++.+
T Consensus 166 -----~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsv~tYiLGIgDRHn~NILi~-~~Ghl~HIDFG~ilg~~~~~g~ 239 (353)
T cd05176 166 -----DKPLAEWLRKYNPAEEEYEKASENFIYSCAGCCVATYVLGICDRHNDNIMLR-STGHMFHIDFGKFLGHAQMFGS 239 (353)
T ss_pred -----cchHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhhhccccCcCCcceEEc-CCCCEEEEeeHHhcCCCccccC
Confidence 0124567777788889999999999999999999999999999999999999 59999999999999988653
Q ss_pred CCCCCCCcccccchhhccccccc----cchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCccc
Q 000492 1319 KTPERVPFRLTRDIIDGMGVTGV----EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKW 1378 (1463)
Q Consensus 1319 ~~pE~VPFRLTrniv~~mG~~g~----eG~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~W 1378 (1463)
..||++|||||++|+++||.... -..|+..|..++.+||++.+.|++++++|+.-.+.+.
T Consensus 240 ~~~e~~PFkLT~emv~~mgG~~~~s~~f~~F~~lc~~af~~LRk~~~~il~L~~lM~~s~iP~~ 303 (353)
T cd05176 240 FKRDRAPFVLTSDMAYVINGGEKPTIRFQLFVDLCCQAYNLIRKHSNLFLNLLSLMTQSGLPEL 303 (353)
T ss_pred CCCCCCCeeecHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCccc
Confidence 35899999999999999984221 1359999999999999999999999999987776654
No 24
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=100.00 E-value=2.6e-49 Score=450.50 Aligned_cols=222 Identities=23% Similarity=0.384 Sum_probs=195.4
Q ss_pred EEecCC-CcceEEEEEeCCC--ceEeeeeecCCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEEcCCCCce
Q 000492 1111 MVMNGI-NAPKVVECFGSDG--HKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGI 1187 (1463)
Q Consensus 1111 ~v~~s~-~~Pk~i~~~gsdG--~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs~~~GL 1187 (1463)
+++++. ..|-.+.+.-.|| ..|.+|+|. +||||||+++||+|++||.+|+++. ++|.++||+|||+++++|+
T Consensus 9 k~~~~~~~~P~~~~~~~~~~~~~~~~~i~K~-gDDLRqD~l~~Ql~~l~~~i~~~~~----l~l~l~~Y~vi~~s~~~Gl 83 (289)
T cd00893 9 KILQSALKIPYLELKKLTDSTLINSEFIVKC-GDDLRQDILATQIITELQKIFELMF----LDLWLNPYLVLPVSKTGGI 83 (289)
T ss_pred hHHHHhhcCchhhccCccCCCCeeEEEEEEC-CCcccHHHHHHHHHHHHHHHHHHcC----CCceeEEEEEEECCCCcee
Confidence 455555 3566665555554 599999996 5999999999999999999998764 8999999999999999999
Q ss_pred eEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcC--CchHHHH
Q 000492 1188 LEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFL--QPAYWFE 1265 (1463)
Q Consensus 1188 IE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~f~--~~~~w~~ 1265 (1463)
||||+|+.|++++.... .+.+.+||.+.|. ++..|++
T Consensus 84 IE~V~ns~tl~~i~~~~-----------------------------------------~~~l~~~~~~~~~~~~~~~~~~ 122 (289)
T cd00893 84 IEFIPNSISIHEIKKQQ-----------------------------------------INSLYDYFLELYGSYTTEAFLQ 122 (289)
T ss_pred EEEeCCchhHHHHHHhc-----------------------------------------cccHHHHHHHHcCCCCcHHHHH
Confidence 99999999999976421 1125567777887 4678999
Q ss_pred HHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhccccCC-CCCCCCCcccccchhhcccccccc--
Q 000492 1266 KRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-KTPERVPFRLTRDIIDGMGVTGVE-- 1342 (1463)
Q Consensus 1266 ~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~~l-~~pE~VPFRLTrniv~~mG~~g~e-- 1342 (1463)
+|.+|++|+|+|||+||||||||||++|||||+ +|+++|||||++|+.++.. ..||+||||||++|+++||+.|.+
T Consensus 123 a~~nF~~SlA~ySvv~YiLgigDRH~~NILid~-~G~liHIDFG~ilg~~p~~~~~~E~~PFrLT~emv~~mGg~~s~~f 201 (289)
T cd00893 123 ARYNFIESMAGYSLLCYLLQIKDRHNGNILLDS-DGHIIHIDFGFILDSSPGNNLGFEPAAFKFTKEMVDFMGGKKSDDF 201 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCceEECC-CCCEEEEehHHhhCcCCcCCCCCCCCCeeecHHHHHHhCCCCChhH
Confidence 999999999999999999999999999999996 9999999999999998653 457999999999999999999987
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000492 1343 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1379 (1463)
Q Consensus 1343 G~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~W~ 1379 (1463)
|.|+.+|+.++.+||+|.+.|++++++|+++|+.+|.
T Consensus 202 ~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~ 238 (289)
T cd00893 202 KKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPCFR 238 (289)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcccC
Confidence 7899999999999999999999999999999999885
No 25
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=100.00 E-value=2e-48 Score=453.15 Aligned_cols=249 Identities=26% Similarity=0.383 Sum_probs=206.7
Q ss_pred cccCCCCCCcccCCCcCcccccc-ceEEEecCCCcceEEEEEeC--CCceEeeeeecCCccchhhHHHHHHHHHHHHHHH
Q 000492 1085 ATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGS--DGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLR 1161 (1463)
Q Consensus 1085 ~~lp~~~~~~y~~~~~~~i~~f~-~~~~v~~s~~~Pk~i~~~gs--dG~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~ 1161 (1463)
..+|++|+. .+.++. ++++|++|+++|++|++.+. +|..|.+|+|.| ||||||++++|+|++||++|+
T Consensus 53 ~~lPldP~~--------~v~~i~~~~~~v~~S~~~Pl~l~f~~~~~~g~~~~~IfK~g-DDLRQD~l~lQli~lm~~i~k 123 (362)
T cd05173 53 LQSPLNPSI--------ILSELNVEKCKYMDSKMKPLWIVYNNKLFGGDSLGIIFKNG-DDLRQDMLTLQILRLMDTLWK 123 (362)
T ss_pred CCCCCCCce--------EEEEEEcCceEEecccCCCeEEEEeecCCCCCEEEEEEeCC-CchhHHHHHHHHHHHHHHHHH
Confidence 357777743 234443 45899999999999999864 799999999965 999999999999999999999
Q ss_pred hCcccccCCceeecceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHH
Q 000492 1162 NHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEV 1241 (1463)
Q Consensus 1162 ~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~~i 1241 (1463)
++. ++|.+++|+|+|+++++||||||+|+.|+++|....... +. ..+|.
T Consensus 124 ~~~----ldL~l~pY~vi~t~~~~GlIE~V~ns~tl~~I~~~~~~~-~~------------------------~~~f~-- 172 (362)
T cd05173 124 EAG----LDLRIVPYGCLATGDRSGLIEVVSSAETIADIQLNSSNV-AA------------------------AAAFN-- 172 (362)
T ss_pred HCC----CCeeeEEEEEEEccCCceEEEEeCCchhHHHHHHhcccc-ch------------------------hcccC--
Confidence 864 889999999999999999999999999999987431100 00 00111
Q ss_pred HhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhcccc--CCC
Q 000492 1242 CENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL--MLK 1319 (1463)
Q Consensus 1242 ~~~~~pvl~~~~~~~f~~~~~w~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~--~l~ 1319 (1463)
.+.+.+||.+.++ +..|..++.+|++|+|+|||+||||||||||++||||+ .+|+++|||||++|+..+ ...
T Consensus 173 ----~~~l~~~l~~~~~-~~~~~~a~~nF~~S~AgYsvvtYILGIGDRHn~NILi~-~~G~l~HIDFG~ilg~~~~~~~~ 246 (362)
T cd05173 173 ----KDALLNWLKEYNS-GDDLERAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVR-KNGQLFHIDFGHILGNFKSKFGI 246 (362)
T ss_pred ----hhHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEEehHHhhccCCcccCC
Confidence 1245677766433 34566789999999999999999999999999999999 599999999999999743 345
Q ss_pred CCCCCCcccccchhhccc--ccc---ccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000492 1320 TPERVPFRLTRDIIDGMG--VTG---VEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1379 (1463)
Q Consensus 1320 ~pE~VPFRLTrniv~~mG--~~g---~eG~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~W~ 1379 (1463)
.||+||||||++|+++|| ..| ..|.|+.+|+.++.+||+|.+.|++++++|+..++.++.
T Consensus 247 ~~E~vPFkLT~emv~vm~~G~~g~s~~~~~F~~~c~~a~~~LRk~~~lil~l~~lM~~s~ip~~~ 311 (362)
T cd05173 247 KRERVPFILTYDFIHVIQQGKTGNTEKFGRFRQYCEDAYLILRKNGNLFITLFALMLTAGLPELT 311 (362)
T ss_pred CCCCCCeeecHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccc
Confidence 699999999999999985 333 468999999999999999999999999999999888764
No 26
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=100.00 E-value=4.1e-49 Score=444.96 Aligned_cols=229 Identities=43% Similarity=0.781 Sum_probs=177.4
Q ss_pred eEeeeeecCCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCC
Q 000492 1131 KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGA 1210 (1463)
Q Consensus 1131 ~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~tl~~il~~~~~~~~~ 1210 (1463)
.|+||+|+ +||+|||+|+||+|+++|.+|++++++++ +++|.|+|+++++||||||+++.||.+++.......+.
T Consensus 1 ~y~~l~K~-~dDlr~D~~~~ql~~~~n~~l~~~~~~~~----~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~ 75 (235)
T PF00454_consen 1 EYSFLVKG-GDDLRQDERVMQLFRLMNRILKKEGETRE----IRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGH 75 (235)
T ss_dssp -EEEEEEE-SS-CHHHHHHHHHHHHHHHHHHHTT-------------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTT
T ss_pred CceEEEEC-CchhhchhHHHHHHHHHHHHHhcCCCCce----EEEeEEEecCCCCceeEEeccccchhHhhccccccccc
Confidence 59999995 59999999999999999999999987755 99999999999999999999999999998764432221
Q ss_pred CCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhh-hhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCC
Q 000492 1211 HGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCEN-FRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDR 1289 (1463)
Q Consensus 1211 ~~~~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~-~~pvl~~~~~~~f~~~~~w~~~R~~ft~S~A~~S~vgyILGLGDR 1289 (1463)
... .+.. ..+...+...+.. ..+.+.++|.+.++++++|+.+|++|++|+|++|+++||||+|||
T Consensus 76 ~~~-~~~~-------------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDR 141 (235)
T PF00454_consen 76 SND-NPSR-------------KYKAKLFEKQSSKVPKDGLRQYFLKSFPSAEEWFEARKNFTRSLAAYSILDYILGLGDR 141 (235)
T ss_dssp TCS-C-------------------------------TTHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS-
T ss_pred ccc-cccc-------------ccccccccccccccccchHHHHHHhcCCChhhhHhhhHhhHHHHHHHhhceEEEeecCC
Confidence 111 1100 0000012222233 334899999999999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCcccccchhhcc----ccccccchhHHHHHHHHHHHhcChHHHHH
Q 000492 1290 HAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGM----GVTGVEGVFRRCCEKTLSVMRTNKEALLT 1365 (1463)
Q Consensus 1290 H~~NILld~~tG~vvhIDfg~~F~~g~~l~~pE~VPFRLTrniv~~m----G~~g~eG~F~~~c~~t~~~LR~~~~~l~~ 1365 (1463)
||+||||+..||+++|||||++|+ ++.+++||.||||||+||+++| |+.|.+|.|+.+|+.++++||++++.|++
T Consensus 142 h~~Nili~~~~g~~~hIDfg~~f~-~~~~~~~e~vPFrLT~~~~~~~~~~l~~~~~~g~f~~~~~~~~~~lr~~~~~l~~ 220 (235)
T PF00454_consen 142 HPGNILIDKKTGELIHIDFGFIFG-GKHLPVPETVPFRLTRNMVNAMGGYLGPSGVEGLFRSSCEAILRALRRNKDLLLS 220 (235)
T ss_dssp -TTTEEE-ETTSEEEE--HSSCTT-HHHGSSSS--SSTTHHHHHHHTTTSSSTSHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CchhheeccccceeeeEEeHHhhh-ccccCCCCCCCeEeCHHHHHHHhccCCCchhHhHHHHHHHHHHHHHhcChHHHHH
Confidence 999999999999999999999999 8888999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHccCCCcccc
Q 000492 1366 IVEVFIHDPLYKWA 1379 (1463)
Q Consensus 1366 iLe~f~~DpL~~W~ 1379 (1463)
+|++|++||+++|+
T Consensus 221 ll~~~~~d~l~~w~ 234 (235)
T PF00454_consen 221 LLELFLRDPLIDWR 234 (235)
T ss_dssp HHHHTTTSCSTTSS
T ss_pred HHHHHHhCCCCCCC
Confidence 99999999999995
No 27
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=100.00 E-value=1.3e-47 Score=439.46 Aligned_cols=260 Identities=23% Similarity=0.344 Sum_probs=218.5
Q ss_pred cceEEEecCC-CcceEEEEEeCCCc-------------eEeeeeecCCccchhhHHHHHHHHHHHHHHHhCcccccCCce
Q 000492 1107 AESVMVMNGI-NAPKVVECFGSDGH-------------KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLG 1172 (1463)
Q Consensus 1107 ~~~~~v~~s~-~~Pk~i~~~gsdG~-------------~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~ 1172 (1463)
.++++++.|+ ..|.++++...|+. .|.+|+|.| ||||||++++|+|++||++|++.. ++|.
T Consensus 15 ~~~~~~~~S~ak~P~~l~F~~~~~~~~~~~~~~~~~~~~~~~IfK~g-DDLRQD~l~~Qli~lm~~i~~~~~----ldl~ 89 (311)
T cd05167 15 YKSGTPLQSHAKAPILVTFKVKDRGGDELEEVDDGKVSWQACIFKVG-DDCRQDMLALQLISLFKNIFQSAG----LDLY 89 (311)
T ss_pred ccccEEeccCCCCceEEEEEecCCCccccccccccccceEEEEEeCC-CCccHHHHHHHHHHHHHHHHHHCC----CCeE
Confidence 3568999997 68999999988764 489999965 999999999999999999999764 8999
Q ss_pred eecceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHH
Q 000492 1173 VRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYF 1252 (1463)
Q Consensus 1173 i~tY~ViPLs~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~ 1252 (1463)
+++|+|+|+++++|+||||+|+.|++++... ..+.+.+|
T Consensus 90 l~~Y~vi~t~~~~GlIE~V~ns~s~~~i~~~-----------------------------------------~~~~l~~~ 128 (311)
T cd05167 90 LFPYRVVATGPGCGVIEVVPNSKSRDQIGRT-----------------------------------------TDNGLYEY 128 (311)
T ss_pred eEEEeEEecCCCceEEEEeCCcHHHHHHHhh-----------------------------------------cccHHHHH
Confidence 9999999999999999999999999986321 01246778
Q ss_pred HHHHcCC--chHHHHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhccccCC-CCCCCCCcccc
Q 000492 1253 FLERFLQ--PAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-KTPERVPFRLT 1329 (1463)
Q Consensus 1253 ~~~~f~~--~~~w~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~~l-~~pE~VPFRLT 1329 (1463)
|.+.|.+ +..|..+|.+|++|+|+|||+||||||||||++|||||. +|+++|||||++|+.++.- ..+|+||||||
T Consensus 129 f~~~~~~~~~~~~~~a~~nF~~S~Agysv~tYiLgigDRHn~NILid~-~G~l~HIDFG~il~~~p~~~~~~E~~PFkLT 207 (311)
T cd05167 129 FTSKYGDESSLAFQKARENFIRSMAAYSLISYLLQIKDRHNGNIMIDD-DGHIIHIDFGFIFEISPGGNLKFESAPFKLT 207 (311)
T ss_pred HHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCccceEEcC-CCCEEEEeeHHhhccCCCCCCCcCCCCEeec
Confidence 8888865 478999999999999999999999999999999999997 9999999999999987532 35799999999
Q ss_pred cchhhccccccccc---hhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhHHHhhhhcccccccCCCCCCccc
Q 000492 1330 RDIIDGMGVTGVEG---VFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDE 1406 (1463)
Q Consensus 1330 rniv~~mG~~g~eG---~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1406 (1463)
++|+++||+.+.+| .|+..|..++.+||++.+.|++++++|+...+.++.
T Consensus 208 ~emv~~mGg~~~s~~f~~F~~~~~~~~~~lR~~~~~il~l~~lm~~s~lp~~~--------------------------- 260 (311)
T cd05167 208 KEMVQIMGGSMEATPFKWFVELCVRAFLAVRPYMDEIVSLVELMLDSGLPCFR--------------------------- 260 (311)
T ss_pred HHHHHHhCCCCcchhHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCchhhh---------------------------
Confidence 99999999988665 677889999999999999999999999877766542
Q ss_pred cccchhHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHHhcCc
Q 000492 1407 YEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDP 1449 (1463)
Q Consensus 1407 ~~~n~~a~~~l~rv~~kL~g~~~~~~lsv~~qV~~LI~~Atd~ 1449 (1463)
..++..+++|+.-.. ...-...++..||+.|.+.
T Consensus 261 -------~~~i~~l~~rf~l~~--se~~a~~~~~~lI~~s~~~ 294 (311)
T cd05167 261 -------GDTIKNLRQRFAPEK--SEREAAEFMLSLIAESYEK 294 (311)
T ss_pred -------HHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHhc
Confidence 123566777764211 1123566888999998874
No 28
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=100.00 E-value=1.9e-45 Score=424.81 Aligned_cols=246 Identities=20% Similarity=0.341 Sum_probs=210.0
Q ss_pred ccccCCCCCCcccCCCcCccccc-cceEEEecCCCcceEEEEEeCC--CceEeeeeecCCccchhhHHHHHHHHHHHHHH
Q 000492 1084 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1160 (1463)
Q Consensus 1084 t~~lp~~~~~~y~~~~~~~i~~f-~~~~~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL 1160 (1463)
+..+|++|+.. +.++ .++++|++|+.+|.++++.+.| |..|.+|+|.| ||||||+.++|++++||++|
T Consensus 49 ~~~lPldP~~~--------v~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~G-DDLRQD~l~lQli~lmd~i~ 119 (354)
T cd00895 49 SCRLPLSPSLL--------VKGIVPRDCSYFNSNAVPLKLSFQNVDPLGENIRVIFKCG-DDLRQDMLTLQMIRIMNKIW 119 (354)
T ss_pred CCcCCCCCCeE--------EEEEEcCceEEecccCCCeEEEEEecCCCCCeEEEEEeCC-CCccHHHHHHHHHHHHHHHH
Confidence 45688888542 2333 3568999999999999999999 89999999987 99999999999999999999
Q ss_pred HhCcccccCCceeecceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHH
Q 000492 1161 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1240 (1463)
Q Consensus 1161 ~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~~ 1240 (1463)
+++. .+|.+++|+|+|+++++|+||||||+.|+++|.... |....+.
T Consensus 120 ~~~~----ldl~l~pY~vl~tg~~~G~IE~V~ns~tl~~I~~~~----g~~g~~~------------------------- 166 (354)
T cd00895 120 VQEG----LDMRMVIFRCFSTGRGRGMVEMIPNAETLRKIQVEH----GVTGSFK------------------------- 166 (354)
T ss_pred HHcC----CCceEEEEEEEecCCCceEEEEeCChhhHHHHHHHh----CcCcccc-------------------------
Confidence 9875 789999999999999999999999999999987531 1111110
Q ss_pred HHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhccccCC--
Q 000492 1241 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-- 1318 (1463)
Q Consensus 1241 i~~~~~pvl~~~~~~~f~~~~~w~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~~l-- 1318 (1463)
...+.+||.+.++++..|..+|.||++|+|+|||+|||||+||||++||||+ .+|+++|||||++|+.++.+
T Consensus 167 -----~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLgIgDRHndNImi~-~~GhlfHIDFG~iLg~~~~~g~ 240 (354)
T cd00895 167 -----DRPLADWLQKHNPTEDEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLK-TTGHMFHIDFGRFLGHAQMFGN 240 (354)
T ss_pred -----cchHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHccccccCCCceeEc-CCCCEEEEeeHHhcCCCcccCC
Confidence 0136678888889999999999999999999999999999999999999999 59999999999999987543
Q ss_pred CCCCCCCcccccchhhcccccccc----chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcc
Q 000492 1319 KTPERVPFRLTRDIIDGMGVTGVE----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYK 1377 (1463)
Q Consensus 1319 ~~pE~VPFRLTrniv~~mG~~g~e----G~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~ 1377 (1463)
..+|++||+||++|+++||..|.+ ..|+..|..++.+||+|.+.|++++++|+.-.+.+
T Consensus 241 ~~re~~PF~Lt~emv~vm~gg~~~S~~f~~F~~lc~~ay~~lRk~~~~il~L~~lM~~sgiP~ 303 (354)
T cd00895 241 IKRDRAPFVFTSDMAYVINGGDKPSSRFHDFVDLCCQAYNLIRKHTHLFLNLLGLMLSCGIPE 303 (354)
T ss_pred CCcCCCCccccHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCcc
Confidence 358999999999999999753332 25999999999999999999999999998655544
No 29
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=2.4e-44 Score=415.80 Aligned_cols=248 Identities=22% Similarity=0.366 Sum_probs=205.2
Q ss_pred ccccCCCCCCcccCCCcCccccc-cceEEEecCCCcceEEEEEeCCC------ceEeeeeecCCccchhhHHHHHHHHHH
Q 000492 1084 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDG------HKYRQLAKSGNDDLRQDAVMEQFFGLV 1156 (1463)
Q Consensus 1084 t~~lp~~~~~~y~~~~~~~i~~f-~~~~~v~~s~~~Pk~i~~~gsdG------~~y~~L~K~G~dDlRqD~r~~Qlf~l~ 1156 (1463)
...+|++|+. .+.++ .++++|++|+.+|.+|++.++|| ..|.+++|.| ||||||++++|++++|
T Consensus 52 ~~~lPl~P~~--------~~~~i~~e~c~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~~IfK~G-DDLRQD~l~lQli~lm 122 (366)
T cd05175 52 GFTSPLNPAH--------QLGNLRLEECRIMSSAKRPLWLNWENPDIMSELLFQNNEIIFKNG-DDLRQDMLTLQIIRIM 122 (366)
T ss_pred CCCCCCCCce--------EEEEEEeccceeechhcCCeEEEEEcCCcccccccCCcceEEeCC-CCccHHHHHHHHHHHH
Confidence 3457887743 23333 34689999999999999999998 4699999976 9999999999999999
Q ss_pred HHHHHhCcccccCCceeecceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHH
Q 000492 1157 NTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRI 1236 (1463)
Q Consensus 1157 N~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~ 1236 (1463)
|++|++.. .+|++++|+|+|+++++|+||||+|+.|+++|.... +....+
T Consensus 123 d~i~~~~~----ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~----~~~~~~---------------------- 172 (366)
T cd05175 123 ENIWQNQG----LDLRMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKG----GLKGAL---------------------- 172 (366)
T ss_pred HHHHHHCC----CCeEEEEEEEEEecCCceEEEEcCCchhHHHHHhcc----cccccc----------------------
Confidence 99999875 799999999999999999999999999999986431 100000
Q ss_pred HHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhcccc
Q 000492 1237 AFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL 1316 (1463)
Q Consensus 1237 ~f~~i~~~~~pvl~~~~~~~f~~~~~w~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~ 1316 (1463)
.| ..+.+++|+.+.++ .+.|..+|.+|++|+|+||++||||||||||++||||+. +|+++|||||++|+.++
T Consensus 173 ~~------~~~~l~~~l~~~~~-~~~~~~a~~nF~~S~AgYsV~tYiLGIgDRHndNImi~~-~G~l~HIDFG~iLg~~p 244 (366)
T cd05175 173 QF------NSHTLHQWLKDKNK-GEMYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVKD-DGQLFHIDFGHFLDHKK 244 (366)
T ss_pred cc------CchhHHHHHhhcCC-cHHHHHHHHHHHHHHHHHHHHHHHhcccccCccceeEcC-CCCEEEEehHHhhcCCC
Confidence 00 01345667766554 456889999999999999999999999999999999995 99999999999999876
Q ss_pred C-C-CCCCCCCcccccchhhccccc-----ccc--chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCccc
Q 000492 1317 M-L-KTPERVPFRLTRDIIDGMGVT-----GVE--GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKW 1378 (1463)
Q Consensus 1317 ~-l-~~pE~VPFRLTrniv~~mG~~-----g~e--G~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~W 1378 (1463)
. + ..||+||||||++|+..||.- +.+ +.|+..|..++.+||+|.+.|+++++.++.-.+.+.
T Consensus 245 ~~~~~~~E~~PFkLT~emv~v~~gg~~~~~~s~~f~~F~~lc~~ay~~lRk~~~~ii~L~~lM~~sgiP~l 315 (366)
T cd05175 245 KKFGYKRERVPFVLTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPEL 315 (366)
T ss_pred ccCCCCCCCCCeEecHHHHHHhccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 4 4 469999999999999999743 233 589999999999999999999999999976555543
No 30
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-37 Score=379.53 Aligned_cols=419 Identities=18% Similarity=0.248 Sum_probs=308.0
Q ss_pred HHHHHHHHhccCCCcchHHHHHHHHHHhccC------------chHHHHHHHHHhhccccccchhhhhHHHhhccCCCcc
Q 000492 897 ALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKD 964 (1463)
Q Consensus 897 Al~~Yl~sL~~~~~~~~~~~~RllsLW~~~~------------~~~~v~~~~~~~~~~vps~kfl~~lpQL~sRl~~~~~ 964 (1463)
|+.--|.|....+.-.+-++.-||.-|-... .+.+|.+...+.+.+++.+..+..+||||..|.+..
T Consensus 859 aLPlVL~Sap~W~~~~l~~~y~lL~~Wa~l~Pl~ALelL~~kfPDqeVR~~AVqwi~~ls~DeL~d~LPQlVQALK~E~- 937 (1639)
T KOG0905|consen 859 ALPLVLASAPSWDWGNLMDVYQLLHQWAPLRPLIALELLLPKFPDQEVRAHAVQWIARLSNDELLDYLPQLVQALKFEL- 937 (1639)
T ss_pred hhHHHHhcCCCCchhhHHHHHHHHHhccccCHHHHHHhhcccCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH-
Confidence 5666666666555555556778888886553 456889999999999999999999999999999753
Q ss_pred ccccccHHHHHHHHHHHHHHhCCh--hHHHHHHhhccccchhhhhcccchhhhhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q 000492 965 ALGLHNFQFALVSLVKKMAIDHPY--HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSYHGAIIRQMK 1042 (1463)
Q Consensus 965 ~~~~~~f~~~L~~ll~~i~~~hP~--~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~il~~l~~~~~~~~~~~~ 1042 (1463)
...+.|.++|...+...++ |-+|+++.-.-.+. ....|...+....-..+.+++.+++ ..-.
T Consensus 938 -----yl~S~Lv~FLL~rsl~sl~~ah~lYWlLk~~l~d~---qfs~rYq~ll~aLl~~~gk~L~~ef--------~~Q~ 1001 (1639)
T KOG0905|consen 938 -----YLKSALVQFLLSRSLVSLQFAHELYWLLKDALDDS---QFSLRYQNLLAALLDCCGKNLREEF--------KKQH 1001 (1639)
T ss_pred -----hccCHHHHHHHHHHhcchHHHHHHHHHHhhccccc---eeehHHHHHHHHHHHHhCHHHHHHH--------HHHH
Confidence 2336789999999888777 44555543221110 0112221111111111112222222 2234
Q ss_pred HHHHHHHHHhhhhcccccccccccchhhhhhccccccccccccccCCCCCCcccCCCcCccccccceEEEecCCCcceEE
Q 000492 1043 QMVDVYIKLAELETRREDTNKRIQLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKVV 1122 (1463)
Q Consensus 1043 ~l~~~~~~la~~~~~~~~~~~~~~~~~~l~~l~~l~~~p~~t~~lp~~~~~~y~~~~~~~i~~f~~~~~v~~s~~~Pk~i 1122 (1463)
+|++.+-.+|+-........+...+.+.+..+... ++-.+|..||+.|.-... | +. ...+.+++|...|-+|
T Consensus 1002 ~Lv~~L~~iae~Vr~as~s~Rq~vL~~~l~~v~~f-f~~n~tcrLPL~Pal~vk-G--v~----i~~CSyFnSNA~PLKi 1073 (1639)
T KOG0905|consen 1002 KLVNELGSIAEDVRSASGSARQHVLRTGLGRVDSF-FLQNNTCRLPLCPALDVK-G--VR----IRECSYFNSNALPLKI 1073 (1639)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHhHHHHHHH-HHhCCceecccCchheec-c--cc----ccccccccCCCcceEE
Confidence 67777777776422111122222233333333221 233356777877743211 1 11 1357889999999999
Q ss_pred EEEe--CCCceEeeeeecCCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEEcCCCCceeEEcCCCCchHHH
Q 000492 1123 ECFG--SDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDY 1200 (1463)
Q Consensus 1123 ~~~g--sdG~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~tl~~i 1200 (1463)
+|+| -+|..++.++|.| ||||||+.++|++++||++|.++. .+|.+.+|+++|.+-+.|++|.|+|+.||.+|
T Consensus 1074 tFvnadp~geni~iIfK~g-DDLRQDml~lQmI~iMdkIWl~eg----LDlrMViFrc~stG~~rgMvElVp~a~TLrKI 1148 (1639)
T KOG0905|consen 1074 TFVNADPLGENISIIFKCG-DDLRQDMLVLQMIRIMDKIWLQEG----LDLRMVIFRCLSTGYDRGMVELVPNAETLRKI 1148 (1639)
T ss_pred EEecCCCccccceeeeecC-chHHHHHHHHHHHHHHHHHHHhcC----CceeEEEEEeecccccccceeecccHHHHHHH
Confidence 9999 6799999999987 999999999999999999999987 89999999999999999999999999999998
Q ss_pred hhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchh
Q 000492 1201 LIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMV 1280 (1463)
Q Consensus 1201 l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~f~~~~~w~~~R~~ft~S~A~~S~v 1280 (1463)
-..+.-.+ .+. + -.+.+|+.+.-+++.++-.+-.||++|||++|++
T Consensus 1149 Qve~GltG----sfk-----------------D-------------~pla~WL~KhNp~e~eYekA~eNFiySCAG~cVa 1194 (1639)
T KOG0905|consen 1149 QVEEGLTG----SFK-----------------D-------------RPLAKWLMKHNPSEFEYEKAVENFIYSCAGWCVA 1194 (1639)
T ss_pred HHHhcccc----ccc-----------------c-------------chHHHHHHhcCCCHHHHHHHHHHHHHhcccceee
Confidence 76533221 110 0 0367899999999999999999999999999999
Q ss_pred hheeccCCCCCCeEEEecCCCcEEEeecchhhccccCCC--CCCCCCcccccchhhccccccc----cchhHHHHHHHHH
Q 000492 1281 GYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLK--TPERVPFRLTRDIIDGMGVTGV----EGVFRRCCEKTLS 1354 (1463)
Q Consensus 1281 gyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~~l~--~pE~VPFRLTrniv~~mG~~g~----eG~F~~~c~~t~~ 1354 (1463)
+|||||+|||.+|||+.+ ||++||||||-..+...++. ...++||-||-+|..++..-+- ...|...|..++.
T Consensus 1195 TYVLGIcDRHNDNIMl~~-sGHmFHIDFGKFLGhaQMfg~fKRDRaPFVfTSdMayvINgG~kpt~~fq~FVDlCCrAyN 1273 (1639)
T KOG0905|consen 1195 TYVLGICDRHNDNIMLTK-SGHMFHIDFGKFLGHAQMFGGFKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYN 1273 (1639)
T ss_pred eEeeecccccCCceEEec-cCcEEEEehhhhcchHHHhcccccccCCeEEeccchhhhcCCCCCchHHHHHHHHHHHHHH
Confidence 999999999999999995 99999999999999876542 4899999999999999875432 3579999999999
Q ss_pred HHhcChHHHHHHHHHHccCCCccccc
Q 000492 1355 VMRTNKEALLTIVEVFIHDPLYKWAL 1380 (1463)
Q Consensus 1355 ~LR~~~~~l~~iLe~f~~DpL~~W~~ 1380 (1463)
.+|+|.+.++++|+.|+.-.+..-..
T Consensus 1274 iiRK~t~lllnlL~lM~~agiPeln~ 1299 (1639)
T KOG0905|consen 1274 IIRKNTNLLLNLLRLMACAGIPELNS 1299 (1639)
T ss_pred HHHHhHHHHHHHHHHHHhcCCCCccc
Confidence 99999999999999999988876543
No 31
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-37 Score=359.99 Aligned_cols=418 Identities=21% Similarity=0.355 Sum_probs=290.2
Q ss_pred HHHHHHHHHHhccCCCcchHHHHHHHHHHhccC------------chHHHHHHHHHhhccccccchhhhhHHHhhccCCC
Q 000492 895 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 962 (1463)
Q Consensus 895 ~~Al~~Yl~sL~~~~~~~~~~~~RllsLW~~~~------------~~~~v~~~~~~~~~~vps~kfl~~lpQL~sRl~~~ 962 (1463)
.+|+..|++|..+.+.......++++-=|-+.. .++.|..+....+.....-..+-.++||+..++..
T Consensus 308 kKALtK~L~sv~W~~~qe~kqal~lM~~W~~id~~dalellss~f~~~sVrayavsrl~~a~deelllYL~qlvqal~ye 387 (843)
T KOG0906|consen 308 KKALTKFLRSVNWRDPQEVKQALALMDKWEEIDVEDALELLSSYFTHPSVRAYAVSRLKGADDEELLLYLLQLVQALKYE 387 (843)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHhhccccchhhhhhhhccccccCHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 479999999999998876666889988897654 24567778788888887778889999999988765
Q ss_pred c----cc--------ccc---------------------------ccHHHHHHHHHHHHHHhCChhH---HHHHHhhccc
Q 000492 963 K----DA--------LGL---------------------------HNFQFALVSLVKKMAIDHPYHT---IFQLLALANG 1000 (1463)
Q Consensus 963 ~----~~--------~~~---------------------------~~f~~~L~~ll~~i~~~hP~~~---l~~l~~~~~~ 1000 (1463)
+ .+ .+. +...+.|..+|.+.+...|+-. +|.+......
T Consensus 388 ~~~~~p~~~~~~~v~s~~~~si~s~~t~pl~s~ss~~~ts~tke~p~~~s~La~fLi~Ral~n~~l~nflywyl~~e~Ed 467 (843)
T KOG0906|consen 388 NGQQLPEEGNPVPVVSEREGSIPSVATTPLESLSSRDMTSTTKEAPKAASDLATFLISRALVNPQLANFLYWYLKVEIED 467 (843)
T ss_pred hhccCCcccCcCcccccccccccccccCccccccCCCccccccccccccchHHHHHHHHHhcCccccceEEEEEEEEecC
Confidence 4 10 000 0011247788888888888732 3333221111
Q ss_pred cchhhhhcccchhhhhhhHHHHHHHHHHHHHh--hHH---HHHHHHHHHHHHHHHHhhhhcc-ccccccccc-chhhhhh
Q 000492 1001 DRIKDKQRSRNSFVVDMDKKLAAENLLEELSS--YHG---AIIRQMKQMVDVYIKLAELETR-REDTNKRIQ-LPREIRC 1073 (1463)
Q Consensus 1001 ~~~~~~~~~~~~~~~~~~~~~~a~~il~~l~~--~~~---~~~~~~~~l~~~~~~la~~~~~-~~~~~~~~~-~~~~l~~ 1073 (1463)
... ..+... .....++.+++ ..+ ..+.+-..+++.+..+.+.... +...++++. +...+..
T Consensus 468 ~~~----~kry~s--------i~~~f~~~l~K~~d~r~~~~~L~~Q~~lVd~L~~i~~~v~~~~g~~~kK~e~L~~lL~~ 535 (843)
T KOG0906|consen 468 TPY----SKRYLS--------IMSSFLEALSKRPDGRAIRGSLEAQQALVDELRRIMKEVKRGSGRRKKKIERLRGLLGD 535 (843)
T ss_pred ChH----HHHHHH--------HHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHhc
Confidence 000 001110 11122233332 111 2334445677777776654211 111122221 1111111
Q ss_pred ccccccccccccccCCCCCCcccCCCcCcccccc-ceEEEecCCCcceEEEEEeCCCc-eEeeeeecCCccchhhHHHHH
Q 000492 1074 LRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSDGH-KYRQLAKSGNDDLRQDAVMEQ 1151 (1463)
Q Consensus 1074 l~~l~~~p~~t~~lp~~~~~~y~~~~~~~i~~f~-~~~~v~~s~~~Pk~i~~~gsdG~-~y~~L~K~G~dDlRqD~r~~Q 1151 (1463)
...+.+..+....+|++|+. .|.++. ++.+++.|-..|-+|++...+|. +|+.++|.| ||||||+.+.|
T Consensus 536 ~~~~~l~~~~~i~lpldp~v--------~i~~Iip~t~~~FkSsl~Pl~l~fkt~~g~g~y~vIFK~G-DDLrQDqlV~Q 606 (843)
T KOG0906|consen 536 HKHMNLLDVRLIALPLDPDV--------LIKGIIPDTASLFKSSLMPLKLTFKTDDGGGKYPVIFKKG-DDLRQDQLVLQ 606 (843)
T ss_pred ccccccccceeeccCCCCCc--------eEeeecCchhhhhhhccCceeEEEEecCCCCceeEEEecC-cchhHHHHHHH
Confidence 11122223333456777743 344443 44689999999999999999998 999999998 99999999999
Q ss_pred HHHHHHHHHHhCcccccCCceeecceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcch
Q 000492 1152 FFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNV 1231 (1463)
Q Consensus 1152 lf~l~N~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 1231 (1463)
++++|+.+|++.. .+|.+++|+|+|+++.-|++|+|++ .|+..|+.....
T Consensus 607 ii~lMd~LLkken----lDLkLtpYkVLatg~~eG~vefI~s-~~la~Ils~~~~------------------------- 656 (843)
T KOG0906|consen 607 IIRLMDRLLKKEN----LDLKLTPYKVLATGPKEGFVEFIPS-KPLARILSEYHS------------------------- 656 (843)
T ss_pred HHHHHHHHhcccc----ccccceeeEEeccCCCcccEEeecC-CcHHHHHHHHHH-------------------------
Confidence 9999999999876 7999999999999999999999986 888888753110
Q ss_pred HhHHHHHHHHHhhhhhhHHHHHHHHcCCc----hHHHHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEee
Q 000492 1232 KDKRIAFQEVCENFRPVLHYFFLERFLQP----AYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHID 1307 (1463)
Q Consensus 1232 ~~k~~~f~~i~~~~~pvl~~~~~~~f~~~----~~w~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhID 1307 (1463)
...|+.+..|+- ..=.+.+.+|.+|||+||+++||||+||||++|+|+.+ +|++||||
T Consensus 657 -----------------I~~ylke~~p~e~ap~gi~~~v~dnfVkScaGYsVitYILGvGDRhldNLllT~-dGk~FHiD 718 (843)
T KOG0906|consen 657 -----------------ILMYLKEDRPDENAPFGISPEVMDNFVKSCAGYSVITYILGVGDRHLDNLLLTK-DGKLFHID 718 (843)
T ss_pred -----------------HHHHHHhhCCCcCCCCCCChhHHHHHHHhhccceeeeeeecccCCCcCceEEcc-CCcEEEEe
Confidence 011112222211 22356788999999999999999999999999999996 99999999
Q ss_pred cchhhccccCCCCCCCCCcccccchhhcccccccc--chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhH
Q 000492 1308 LGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE--GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLK 1384 (1463)
Q Consensus 1308 fg~~F~~g~~l~~pE~VPFRLTrniv~~mG~~g~e--G~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~W~~~~~~ 1384 (1463)
||++|+.. |.|-+.|..|++.|+++||....+ -.|+..|..++..||++.+.|+++.++|+..-+.+....|.+
T Consensus 719 FgyIlGRD---PKP~pp~MkL~kemve~mgg~es~~Yq~F~s~c~~Af~~LRRssnlIlnLf~LM~~~~IPDia~dp~k 794 (843)
T KOG0906|consen 719 FGYILGRD---PKPFPPPMKLAKEMVEGMGGAESKQYQEFRSYCYEAFLILRRSSNLILNLFSLMADANIPDIAFDPNK 794 (843)
T ss_pred eeeeccCC---CCCCCCccccCHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCceeeCcch
Confidence 99999987 567778999999999999954432 469999999999999999999999999987777665554443
No 32
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-36 Score=358.19 Aligned_cols=415 Identities=21% Similarity=0.302 Sum_probs=295.4
Q ss_pred HHHHHHHHHHhccCCCcchHHHHHHHHHHhccC------------chHHHHHHHHHhhccccccchhhhhHHHhhccCCC
Q 000492 895 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 962 (1463)
Q Consensus 895 ~~Al~~Yl~sL~~~~~~~~~~~~RllsLW~~~~------------~~~~v~~~~~~~~~~vps~kfl~~lpQL~sRl~~~ 962 (1463)
..++.--+.|+.+++.-+...+.-||.-|=..+ .++.|.....+.+..+....++-.+-|||.-|.+.
T Consensus 578 Pe~L~kLllsvkW~~redvAqmy~LL~~Wp~l~v~~aleLLd~nypD~~VR~fAV~~L~~Lsdd~l~~YLLqLVQalKyE 657 (1076)
T KOG0904|consen 578 PEALPKLLLSVKWNKREDVAQMYYLLKDWPPLSVELALELLDCNYPDPNVRAFAVRCLEQLSDDDLLQYLLQLVQALKYE 657 (1076)
T ss_pred hHHHHHHHheeeeccHHHHHHHHHHHhhCCCCCHHHHHHHhcCCCCcHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcc
Confidence 456666688888887766666778888886554 35667888889999999999999999999999974
Q ss_pred ccccccccHHHHHHHHHHHHHHhCC---hhHHHHHHhhccccchhhhhcccchhhhhhhHHHHHHHHHHHHHhhHHHHHH
Q 000492 963 KDALGLHNFQFALVSLVKKMAIDHP---YHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSYHGAIIR 1039 (1463)
Q Consensus 963 ~~~~~~~~f~~~L~~ll~~i~~~hP---~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~il~~l~~~~~~~~~ 1039 (1463)
+..++.|..+|.+.|...- |..+|+|.+...... ...|.+ .||+.-.+-....++
T Consensus 658 ------pylds~L~rFLL~RAL~N~RIGHflFWhLRSEm~~~~----~~~Rfg------------llLEaYlRGc~~hlk 715 (1076)
T KOG0904|consen 658 ------PYLDSALVRFLLKRALRNQRIGHFLFWHLRSEMAQPS----VQQRFG------------LLLEAYLRGCTHHLK 715 (1076)
T ss_pred ------chhHhHHHHHHHHHHhhccccchhhhhhHHHHhccHH----HHHHHH------------HHHHHHHhccHHHHH
Confidence 4667889999988887643 356788866442210 111111 233332221222222
Q ss_pred HHHHHHHHHHHHhhhh------ccccccccccc-chhhhhhccccccccccccccCCCCCCcccCCCcCccccccceEEE
Q 000492 1040 QMKQMVDVYIKLAELE------TRREDTNKRIQ-LPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAESVMV 1112 (1463)
Q Consensus 1040 ~~~~l~~~~~~la~~~------~~~~~~~~~~~-~~~~l~~l~~l~~~p~~t~~lp~~~~~~y~~~~~~~i~~f~~~~~v 1112 (1463)
-+.+-++++.+|-... ..+++..+.+. +...++.....+. .....-|++|.... |.. +.++++|
T Consensus 716 ~l~kQve~l~kLk~lt~~iK~~~~K~~~~~~~~~l~~~lr~~~~~~~--lq~l~sPLdP~~~l--gel-----~iekckv 786 (1076)
T KOG0904|consen 716 VLTKQVEALEKLKKLTDLIKLSAEKEDVSQVKEQLKLCLRQLANSEA--LQNLQSPLDPSLKL--GEL-----IIEKCKV 786 (1076)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhHHHHHH--HHhccCCCChhhhh--cch-----hhhhhhh
Confidence 2222233333322221 11111111111 1111111111110 11233466664322 221 3467899
Q ss_pred ecCCCcceEEEEEe----CCCceEeeeeecCCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEEcCCCCcee
Q 000492 1113 MNGINAPKVVECFG----SDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGIL 1188 (1463)
Q Consensus 1113 ~~s~~~Pk~i~~~g----sdG~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs~~~GLI 1188 (1463)
|+|+.||-.+.+-. +++ .-..++|+| ||||||..+.|++++|+.+|+... .+|.+.+|.++|++...|||
T Consensus 787 M~SkkrPLwl~~~Np~~~s~~-~v~iIFKNG-DDLRQDMLtLQmLriMd~iWk~~g----lDlrm~PYgcls~Gd~iGlI 860 (1076)
T KOG0904|consen 787 MDSKKRPLWLVFENPDAGSNL-SVGIIFKNG-DDLRQDMLTLQMLRIMDNIWKTEG----LDLRMLPYGCLSTGDRIGLI 860 (1076)
T ss_pred hhccCCceEEEecCCCcccCC-ceeEEEcCC-chHHHHHHHHHHHHHHHHHHHhcC----CCeeccccccccccceeeeE
Confidence 99999999998853 334 557899998 999999999999999999999877 79999999999999999999
Q ss_pred EEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhh-hhHHHHHHHHcCCchHHHHHH
Q 000492 1189 EWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFR-PVLHYFFLERFLQPAYWFEKR 1267 (1463)
Q Consensus 1189 E~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~-pvl~~~~~~~f~~~~~w~~~R 1267 (1463)
|.|+|+.|+.+|..+..... +. .-|. ..|.+|+-++.|.....=.+-
T Consensus 861 EVV~~s~TIa~IQ~~~g~~~-at-------------------------------~afn~~~L~~WLKekNp~e~kld~AI 908 (1076)
T KOG0904|consen 861 EVVRNSETIANIQLNTGNMA-AT-------------------------------AAFNKDALLNWLKEKNPGEDKLDAAI 908 (1076)
T ss_pred EEecCchhhhhhhhccccce-ee-------------------------------ccCCHHHHHHHHhhcCchHHHHHHHH
Confidence 99999999999864321100 00 1112 267888877777666677888
Q ss_pred HHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhccccC-CC-CCCCCCcccccchhhcccccccc---
Q 000492 1268 LAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LK-TPERVPFRLTRDIIDGMGVTGVE--- 1342 (1463)
Q Consensus 1268 ~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~~-l~-~pE~VPFRLTrniv~~mG~~g~e--- 1342 (1463)
..||.|||+||+++|||||||||.+|||+.+ ||++||||||.+.+.++. |. ..|+|||-||++++..|+-.+..
T Consensus 909 e~Ft~SCAGYcVATyVLGIgDRHsDNIMvke-~GqlFHIDFGHiLGh~KsKlGi~RERvPFvLT~dFl~VI~~G~~~~~~ 987 (1076)
T KOG0904|consen 909 EEFTLSCAGYCVATYVLGIGDRHSDNIMVKE-TGQLFHIDFGHILGHFKSKLGINRERVPFVLTYDFLHVIQKGKTKNSE 987 (1076)
T ss_pred HHHHHhhccceeeeeeecccccccCceEEec-cCcEEEEEhhhhhccchhhcCcccccCceEeecceeeeecccCCCCch
Confidence 9999999999999999999999999999996 999999999999998864 54 58999999999999999865432
Q ss_pred ---chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000492 1343 ---GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1379 (1463)
Q Consensus 1343 ---G~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~W~ 1379 (1463)
+.|+.+|+.++.+||+|.+.+++++..|+--.|.+-+
T Consensus 988 ~eF~kFq~~C~~AYl~lr~H~nLfi~LFsmMl~~glPELs 1027 (1076)
T KOG0904|consen 988 KEFQKFQELCEKAYLALRRHGNLFISLFSMMLGTGLPELS 1027 (1076)
T ss_pred hHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhcCCCccc
Confidence 5799999999999999999999999999998887654
No 33
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=100.00 E-value=1.6e-34 Score=344.24 Aligned_cols=317 Identities=29% Similarity=0.394 Sum_probs=253.3
Q ss_pred hHHHHHHHhccCCCCCCccccCCCCCCCCCcccchhhhhHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 000492 509 TKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEESTEY 588 (1463)
Q Consensus 509 ~~~~~eaAWrLg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~~L~al~~~d~~~~~~~i~~aR~~l~~~Lsa~s~ESy~~ 588 (1463)
+|+++|||||||+||.+..+.... .....+..+|+++.++++++++.|...|+++|..++.++++++.|||.+
T Consensus 1 ~~~~~eaaWrl~~Wd~l~~~~~~~-------~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~ 73 (352)
T PF02259_consen 1 APLAAEAAWRLGDWDLLEEYLSQS-------NEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQR 73 (352)
T ss_pred ChHHHHHHHhcCChhhHHHHHhhc-------cCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 589999999999999876653221 1112256788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHHHHHHHHHHhhccchhhhhhhHHHHHH
Q 000492 589 IYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRV 668 (1463)
Q Consensus 589 ~Y~~lvrLq~L~ELe~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~~q~~~~~~EpiL~~R~~ 668 (1463)
+|+.+++||+|.|||+++++..... + ....+..+.+.|++|+..++.++++|+|||++|+.
T Consensus 74 ~y~~l~~lq~L~Elee~~~~~~~~~---------------~----~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~ 134 (352)
T PF02259_consen 74 AYPSLVKLQQLVELEEIIELKSNLS---------------Q----NPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRL 134 (352)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhc---------------c----cHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999999999999999998642211 0 12357789999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHH
Q 000492 669 LLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYI 748 (1463)
Q Consensus 669 vl~il~~~~~~~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l 748 (1463)
+++++...++...+|+++|++|||+|++++|.++|.++..+....... ...+.+|+||++|++|++..|+..|+.+
T Consensus 135 ~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~----~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 135 VLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL----LPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC----CcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999777778899999999999999999999999999886543211111 1234799999999999999999999887
Q ss_pred Hhh-ccC------------------------------CCchhhHHHHHhHHHHHh----hcCChHHHHHhhhchhccccc
Q 000492 749 SEN-YES------------------------------NEEAPDVYRLVGKWLAES----RSSNSRIILENYLKPAVSFSE 793 (1463)
Q Consensus 749 ~~~-~~~------------------------------~~~~a~l~~l~g~wlaet----~~e~~~~I~~~Y~~~a~~~~~ 793 (1463)
+.+ ... ....++++.++|+|+.+. ...+.+++++.|.+ |+.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~-a~~~~- 288 (352)
T PF02259_consen 211 LKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKE-ATKLD- 288 (352)
T ss_pred HHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH-HHHhC-
Confidence 762 111 122478899999999999 78889999988877 54332
Q ss_pred ccccchhhHHHHhhhhHhHHHHHHHHHHHhHHHHhchHHHHHHHHHhhhhHHHHHHHHHHHhhcccCccchhhHHHHHHH
Q 000492 794 DQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQ 873 (1463)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~la~f~d~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~y~~~~~~~~ 873 (1463)
....++++++|.|+|..+..... + ....
T Consensus 289 ----------~~~~k~~~~~a~~~~~~~~~~~~----~--------------------------~~~~------------ 316 (352)
T PF02259_consen 289 ----------PSWEKAWHSWALFNDKLLESDPR----E--------------------------KEES------------ 316 (352)
T ss_pred ----------hhHHHHHHHHHHHHHHHHHhhhh----c--------------------------cccc------------
Confidence 22456899999999998753210 0 0000
Q ss_pred HHhhhcHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHH
Q 000492 874 KQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVS 921 (1463)
Q Consensus 874 ~~~~lD~~e~~~l~~~~~~fl~~Al~~Yl~sL~~~~~~~~~~~~Rlls 921 (1463)
. +..+..|+..||++|++||.+|+++..+++|||||
T Consensus 317 -----~-------~~~~~~~~~~ai~~y~~al~~~~~~~~~~~~RlLt 352 (352)
T PF02259_consen 317 -----S-------QEDRSEYLEQAIEGYLKALSLGSKYVRQDLPRLLT 352 (352)
T ss_pred -----c-------hhHHHHHHHHHHHHHHHHHhhCCCchHHHhhHhcC
Confidence 0 02356899999999999999999999999999986
No 34
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=99.96 E-value=2.9e-28 Score=304.29 Aligned_cols=411 Identities=19% Similarity=0.246 Sum_probs=266.1
Q ss_pred HHHHHHHHhccCCCcchHHHHHHHHHHhccC--------------------------------chHHHHHHHHHhhcccc
Q 000492 897 ALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS--------------------------------SRQNVIKNMVDTIDEVQ 944 (1463)
Q Consensus 897 Al~~Yl~sL~~~~~~~~~~~~RllsLW~~~~--------------------------------~~~~v~~~~~~~~~~vp 944 (1463)
++..+..-+...+..+.-.+++-+.+.+... .++.+.....+.+.+.|
T Consensus 1285 ~~~~~~~~~v~~~~~~~~~i~~al~~~~~~~~~~~~~~dl~~~l~Wa~~~~~~~l~~l~p~~~~~p~~~~~~~~~l~s~~ 1364 (1803)
T KOG0902|consen 1285 SLKEEVTRLVRFDPADLVHIPEALKLFVTQKTTEESRSDLSHTLYWAPVSPLGVLDLLTPIRKPHPRLMQYAVRVLRSYS 1364 (1803)
T ss_pred hhhHHhhHHhhcChhhhhccHHHHHHHhccCcccccccchhheeeccccCcccchhhcccccCCCcHHHHHHHHHHHhCC
Confidence 4555555555555555555666666666542 12345566677888999
Q ss_pred ccchhhhhHHHhhccCCCccccccccHHHHHHHHHHHHHH---hCChhHHHHHHhhccccchhhhhcccchhhhhhhHHH
Q 000492 945 SYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAI---DHPYHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKL 1021 (1463)
Q Consensus 945 s~kfl~~lpQL~sRl~~~~~~~~~~~f~~~L~~ll~~i~~---~hP~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1021 (1463)
...-+..+|||++.|.... .+ -+..++.+.+. -+-||.+|.|.+-..-+ +....+ .. ....-..
T Consensus 1365 ~~~~~fyvPQiVq~lryDk------m~--~v~~~il~~a~~s~l~aHqliWnm~~n~y~d---~~~~~~-~~-~~~~l~~ 1431 (1803)
T KOG0902|consen 1365 PNEMLFYVPQIVQALRYDK------MG--YVEEYILWAAGKSQLFAHQLIWNMKANLYVD---EEAIVK-AD-IGEILDR 1431 (1803)
T ss_pred hhhhhhhhHHHHHHHhhcc------hh--HHHHHHHHHhhhhHHHHHHHHHHhhhhhccc---cccccc-hh-HHHHHHH
Confidence 9999999999999998642 11 24445544433 36678899986532111 100000 00 0001112
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh-hc-ccccccccccchhhhhhccccccccccccccCCCCCCcccCCC
Q 000492 1022 AAENLLEELSSYHGAIIRQMKQMVDVYIKLAEL-ET-RREDTNKRIQLPREIRCLRQLELVPVVTATVPIDCTCQYNEGS 1099 (1463)
Q Consensus 1022 ~a~~il~~l~~~~~~~~~~~~~l~~~~~~la~~-~~-~~~~~~~~~~~~~~l~~l~~l~~~p~~t~~lp~~~~~~y~~~~ 1099 (1463)
..+.|++.++....++...-..+++.+..+... .+ .+. ..|+..+.+.+.+++--..+++|+..-.+-...+|..|.
T Consensus 1432 ~~e~i~~~~s~~a~df~~rEf~ff~~vT~ISg~l~P~~k~-~erk~~i~~~l~kik~~~~~YlPs~P~~~v~~i~~~Sg~ 1510 (1803)
T KOG0902|consen 1432 VREEITGSLSGPARDFYEREFDFFNKVTSISGKLKPYPKG-DERKKAILEELSKIKVQPGCYLPSNPDAVVLDIDYKSGT 1510 (1803)
T ss_pred HHHHHHhcCCchhhHHHHHHhHHHHHhhhccceeecCCCc-HHHHHHHHHHHHhhcccCceecCCCCCceEEEeecCCCc
Confidence 234444444433344444444566555554431 10 110 112223333333333211223333211111122333331
Q ss_pred -------cCccccccceEEEecCCCcceEEEEEeCCCc----------eEeeeeecCCccchhhHHHHHHHHHHHHHHHh
Q 000492 1100 -------FPYFKGLAESVMVMNGINAPKVVECFGSDGH----------KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRN 1162 (1463)
Q Consensus 1100 -------~~~i~~f~~~~~v~~s~~~Pk~i~~~gsdG~----------~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~ 1162 (1463)
.|++.. ++|-+ ...||- ...-++|.| ||.|||....|++.++..+|+.
T Consensus 1511 plQS~aK~Pfmat----F~vkr----------~~~~g~~~~~k~~~~~WQa~IFKvG-DDcRQD~LaLQiislf~~if~~ 1575 (1803)
T KOG0902|consen 1511 PLQSAAKAPFMAT----FKVKR----------LEKDGLQCRSKSQKISWQAAIFKVG-DDCRQDMLALQIISLFKNIFQL 1575 (1803)
T ss_pred cchhhccCCeeEE----Eeeee----------ccCCcccccccccchhhhhhhhhcC-chHHHHHHHHHHHHHHHHHHHH
Confidence 233332 22211 112221 113689987 9999999999999999999997
Q ss_pred CcccccCCceeecceEEEcCCCCceeEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHH
Q 000492 1163 HRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVC 1242 (1463)
Q Consensus 1163 ~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~~i~ 1242 (1463)
-. .++.+.+|+|+|.+|.||+||.|||+.+=..+= |..
T Consensus 1576 ~g----Ld~~lfPYrV~aT~pGcGVIEviPn~~SRdqlG-----------r~t--------------------------- 1613 (1803)
T KOG0902|consen 1576 VG----LDLYLFPYRVVATAPGCGVIEVIPNSKSRDQLG-----------RET--------------------------- 1613 (1803)
T ss_pred cC----CceEEeeeeeeccCCCCceEEeCCCCccHHHhc-----------ccc---------------------------
Confidence 65 799999999999999999999999998866531 100
Q ss_pred hhhhhhHHHHHHHHcC--CchHHHHHHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhccccCC-C
Q 000492 1243 ENFRPVLHYFFLERFL--QPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-K 1319 (1463)
Q Consensus 1243 ~~~~pvl~~~~~~~f~--~~~~w~~~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~~l-~ 1319 (1463)
..-+.+||..+|. ++..|-++|.||.+|+|+||+++|.|.+.|||.+|||||. -|+++|||||+.||..+.- -
T Consensus 1614 ---~~glyeyF~~~~G~~~s~~fq~Ar~NF~~S~A~Ysv~s~lLq~KDRHNGNim~Dd-~G~~iHIDFGf~~e~sPGgnl 1689 (1803)
T KOG0902|consen 1614 ---DNGLYEYFTRKYGDESSEAFQTARYNFVRSMAGYSVLSYLLQIKDRHNGNIMIDD-QGHIIHIDFGFMFESSPGGNL 1689 (1803)
T ss_pred ---cccHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcccccccCCceeEcc-CCCEEEEeeeeEEecCCCCcc
Confidence 0124567777776 4678999999999999999999999999999999999995 9999999999999976542 2
Q ss_pred CCCCCCcccccchhhcccccccc-----chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhHH
Q 000492 1320 TPERVPFRLTRDIIDGMGVTGVE-----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKA 1385 (1463)
Q Consensus 1320 ~pE~VPFRLTrniv~~mG~~g~e-----G~F~~~c~~t~~~LR~~~~~l~~iLe~f~~DpL~~W~~~~~~~ 1385 (1463)
.-|. ||.||.+|+..|| |.. -.|...|..++-+.|.+.+.|.+.++.|+.-.|.++...+.+.
T Consensus 1690 ~fE~-~fKLt~Em~~~mg--G~~~~~~f~~f~elcVk~yLA~R~~~~~iv~~V~~mldsgLPCfrg~~i~n 1757 (1803)
T KOG0902|consen 1690 GFEP-PFKLTKEMVMLMG--GKMEAKPFKWFQELCVKGYLAARPYMDAIVSLVQSMLDSGLPCFRGQTIGN 1757 (1803)
T ss_pred CcCC-CccchHHHHHHhC--CCCCCCcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhcCCCccCcchHHH
Confidence 3466 9999999999999 432 2588999999999999999999999999999999997655443
No 35
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.3e-25 Score=269.04 Aligned_cols=197 Identities=23% Similarity=0.378 Sum_probs=172.9
Q ss_pred CceEeeeeecCCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEEcCCCCceeEEcCCCCchHHHhhhhccCC
Q 000492 1129 GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNG 1208 (1463)
Q Consensus 1129 G~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~tl~~il~~~~~~~ 1208 (1463)
..-...++|.| |||||+....||+..|-.+|...+ -.|+||.|+|+-+|.++||||-|+|+.++|.|-...
T Consensus 585 WdL~SVIVKtG-dDLrQE~fA~Qli~~f~~IW~Eeg----vplWlRpykIlvtss~sGLIEtI~da~SIHsIKk~l---- 655 (847)
T KOG0903|consen 585 WDLRSVIVKTG-DDLRQELFAYQLISAFKDIWQEEG----VPLWLRPYKILVTSSDSGLIETIVDAMSIHSIKKRL---- 655 (847)
T ss_pred cceEEEeeecC-chHHHHHHHHHHHHHHHHHHHHcC----CcceeeeEEEEEEecCccceeeccchhhHHHHHHhc----
Confidence 34566899987 999999999999999999999876 589999999999999999999999999999974321
Q ss_pred CCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHc-CCchHHHHHHHHHHHhhhccchhhheeccC
Q 000492 1209 GAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERF-LQPAYWFEKRLAYTRSVAASSMVGYIVGLG 1287 (1463)
Q Consensus 1209 ~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~f-~~~~~w~~~R~~ft~S~A~~S~vgyILGLG 1287 (1463)
++. -.+++||...+ ++...+-.+.+||..|+|+||+|+|+|.+.
T Consensus 656 -------~~~----------------------------~~l~~F~~~~g~~NS~~yk~AQrNFvqSlagYSLvcYlLQvK 700 (847)
T KOG0903|consen 656 -------PNL----------------------------ASLRHFFAAFGKPNSEKYKSAQRNFVQSLAGYSLVCYLLQVK 700 (847)
T ss_pred -------chh----------------------------hhHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 000 02445665555 366788899999999999999999999999
Q ss_pred CCCCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCcccccchhhccccccccc----hhHHHHHHHHHHHhcChHHH
Q 000492 1288 DRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEG----VFRRCCEKTLSVMRTNKEAL 1363 (1463)
Q Consensus 1288 DRH~~NILld~~tG~vvhIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG----~F~~~c~~t~~~LR~~~~~l 1363 (1463)
|||.+|||||. -|+++|||||+.....+..---|..||.||.++++.|| |++| .|+..|-..+..+|+|.+-|
T Consensus 701 DRHNGNILiD~-EGHIIHIDFGFmLsnsPgnvgFEsAPFKLT~EylEvmg--G~~~d~FdyfK~L~l~gf~a~RKhadrI 777 (847)
T KOG0903|consen 701 DRHNGNILIDE-EGHIIHIDFGFMLSNSPGNVGFESAPFKLTTEYLEVMG--GLDSDMFDYFKSLMLQGFMALRKHADRI 777 (847)
T ss_pred cccCCceEecC-CCCEEEEeeeeEecCCCCCcccccCchhhHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999996 89999999999999888766779999999999999999 8887 48899999999999999999
Q ss_pred HHHHHHHcc
Q 000492 1364 LTIVEVFIH 1372 (1463)
Q Consensus 1364 ~~iLe~f~~ 1372 (1463)
..+.|+|-.
T Consensus 778 v~lvEiMq~ 786 (847)
T KOG0903|consen 778 VLLVEIMQD 786 (847)
T ss_pred HHHHHHhhc
Confidence 999999855
No 36
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.91 E-value=9.6e-25 Score=257.50 Aligned_cols=164 Identities=20% Similarity=0.345 Sum_probs=135.5
Q ss_pred CcceEEEEEeCCCce-----------EeeeeecCCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEEcCCCC
Q 000492 1117 NAPKVVECFGSDGHK-----------YRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSA 1185 (1463)
Q Consensus 1117 ~~Pk~i~~~gsdG~~-----------y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs~~~ 1185 (1463)
.+|.-+.+...+|.. |.+|+|. ||||||+.|.|++++|+.||+++. .+|.+.+|+|+|++++.
T Consensus 1026 ~~pv~~p~~~~~gvs~~~~~~~~~q~~~iIyK~--gDLRQDQLVLQmIrLMDrLLKkEn----LDLKLTPYRVLATG~ds 1099 (1374)
T PTZ00303 1026 SAPVTSPVTAVNGVSPESLHDSLPQECMFLYKR--ENVERDQLMCISSRLLQMLLSSEI----GNAEMLDYSVLPLSCDS 1099 (1374)
T ss_pred ccceeeeeeccCCcCccccccccchheeEEEec--CcHHHHHHHHHHHHHHHHHHHhcC----CCccccceEEEeccCCc
Confidence 478888888888887 9999995 699999999999999999999987 79999999999999999
Q ss_pred ceeEEcCCCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHH
Q 000492 1186 GILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFE 1265 (1463)
Q Consensus 1186 GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~f~~~~~w~~ 1265 (1463)
|+||+|++. ++.+|... . +..||. +..+.
T Consensus 1100 GLIEfVps~-tLAsI~~~--------------------------------~------------Il~YLr--~~~t~---- 1128 (1374)
T PTZ00303 1100 GLIEKAEGR-ELSNLDNM--------------------------------D------------IASYVL--YRGTR---- 1128 (1374)
T ss_pred ccEEEecch-HHHHhhhh--------------------------------H------------HHHHHH--hcCcH----
Confidence 999999974 56654310 0 112222 12221
Q ss_pred HHHHHHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCcccccchhhcccc
Q 000492 1266 KRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGV 1338 (1463)
Q Consensus 1266 ~R~~ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG~ 1338 (1463)
...||++|+|.||+++||||+||||++||||+. +|++||||||++|+....-+.+-+.|.|+-.+|..++|.
T Consensus 1129 ~~~NFi~S~AGYsViTYILgIgDRHngNILId~-dGhLfHIDFGFILg~rtfkeKl~~s~vR~D~~l~eav~~ 1200 (1374)
T PTZ00303 1129 SCINFLASAKLFLLLNYIFSIGDRHKGNVLIGT-NGALLHIDFRFIFSEKTFVEKLARSTVRIDDAFLAAVEQ 1200 (1374)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccCCceeEcC-CCCEEEEecceeecCchhhhccCCCceehhHHHHHHHHH
Confidence 246999999999999999999999999999996 999999999999997754455667789999998877654
No 37
>PF02260 FATC: FATC domain; InterPro: IPR003152 The FATC domain is found at the C-terminal end of the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding; PDB: 2KIT_A 1W1N_A 2KIO_A.
Probab=99.34 E-value=2.2e-13 Score=104.17 Aligned_cols=32 Identities=44% Similarity=0.794 Sum_probs=27.7
Q ss_pred ccCHHHHHHHHHHHhcCchhhhhhCcccccCC
Q 000492 1432 MRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1463 (1463)
Q Consensus 1432 ~lsv~~qV~~LI~~Atd~~nL~~m~~gW~Pwl 1463 (1463)
++||++||++||++|||++|||+||+||+|||
T Consensus 2 ~lsv~~qV~~LI~~At~~~nLa~my~GW~pw~ 33 (33)
T PF02260_consen 2 PLSVEQQVDELISEATDPENLARMYIGWMPWW 33 (33)
T ss_dssp -S-STHHHHHHHHHHHHHHHHHHHCTSS-TT-
T ss_pred CCCHHHHHHHHHHHHcCHHHHHHHhcchhccC
Confidence 68999999999999999999999999999997
No 38
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=1.9e-08 Score=136.23 Aligned_cols=242 Identities=7% Similarity=-0.154 Sum_probs=170.0
Q ss_pred ecCCCcceEEEEEeCCCceEeeeeecCCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEEcCCCCceeEEcC
Q 000492 1113 MNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVD 1192 (1463)
Q Consensus 1113 ~~s~~~Pk~i~~~gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~ 1192 (1463)
..+...|+..+..++++...+...| +.+++|+++.+++. +...++.|++.|-..+|+++++..+.+|-+|+.
T Consensus 2172 ~~~~~~~~~sse~et~~~l~k~~~~-~~~~~~er~~q~~~-------~~~~~~~rq~~lDe~~l~~l~~~r~~fL~~Alt 2243 (2806)
T KOG0892|consen 2172 YQEDEERRSSSEFETLKDLQKLERS-TVEASNEREEQMRK-------NHHVRVQRQLILDEEELLALSEDRSKFLTLALT 2243 (2806)
T ss_pred hhhHHHHHhHHHHhhHHHHHHHHHh-hhhhhHHHHHHHHH-------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888889999887766666 67999999999886 333445566788899999999999999999999
Q ss_pred CCCchHHHhhhhccCCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHH---HcCCchHHHHHHHH
Q 000492 1193 GTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLE---RFLQPAYWFEKRLA 1269 (1463)
Q Consensus 1193 ~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~---~f~~~~~w~~~R~~ 1269 (1463)
|.....+.-.+. ..+++.|+.+..+....+.+.+... +.+++..=+-+|.|++..+.-+ ...++-.|...+..
T Consensus 2244 ~Yl~cl~~~~~~--D~~~i~R~cslWfsns~~~evn~~m--k~~i~~ipsyKFip~~yQlAaRl~~~~~~~fq~~L~~Li 2319 (2806)
T KOG0892|consen 2244 NYLNCLSESDEY--DVDLIFRCCSLWFSNSHLKEVNNSL--KHEIQTVPSYKFIPLVYQLAARLGNSENNSFQKSLTSLI 2319 (2806)
T ss_pred hHHHHHhhcccc--cHHHHHHHhhhhccccchHHHHHHH--HHHhccCCcchhHHHHHHHHHHhccccCchHHHHHHHHH
Confidence 876654432210 0112222222222222222111111 1222222234677766555422 35577889999999
Q ss_pred HHHhhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCcccccchhhccccccccchhHHHH
Q 000492 1270 YTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCC 1349 (1463)
Q Consensus 1270 ft~S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~F~~~c 1349 (1463)
|..+.+.-.-..|+|+.+++|--+. .-+-+|.+ | ++.+++||++|+...++++++.++.++++.|+
T Consensus 2320 ~r~~~dhPyhtly~L~~L~~~~rd~-----e~~n~sr~-------s--l~~~rki~a~l~~~~v~~~~~~~v~~v~~lc~ 2385 (2806)
T KOG0892|consen 2320 YRVGRDHPYHTLYQLLSLVNAVRDN-----EDENRSRG-------S--IDRDRKIAAELDLCDVNQGAGNMVRQLECLCE 2385 (2806)
T ss_pred HHHhccCchHHHHHHHHHHhcCcCh-----hhhhhccc-------c--cchhHHHHHHHhhhHhhccchhHHHHHHHHHH
Confidence 9999999999999999998887661 11122332 2 67899999999999999999999999999999
Q ss_pred HHHHHHHhcChHHHHHHHHHHccCCCcccccC
Q 000492 1350 EKTLSVMRTNKEALLTIVEVFIHDPLYKWALS 1381 (1463)
Q Consensus 1350 ~~t~~~LR~~~~~l~~iLe~f~~DpL~~W~~~ 1381 (1463)
..+.-+- -......++.+....++...|...
T Consensus 2386 ~yI~lAn-l~~~q~~t~~k~v~~p~~~~~~K~ 2416 (2806)
T KOG0892|consen 2386 AYISLAN-LKTSQNDTTSKLVRLPGYQWFLKQ 2416 (2806)
T ss_pred HHHHHhc-CcccccchhhhhhcCccccHHHhh
Confidence 9998887 666777888888888888888653
No 39
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.80 E-value=1.4 Score=58.75 Aligned_cols=60 Identities=17% Similarity=-0.079 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHH
Q 000492 682 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYIS 749 (1463)
Q Consensus 682 ~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~ 749 (1463)
.|...+.+....|++..|...+.++..+. |.+..+.+..|..+|..|+...|+.+++.++
T Consensus 839 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 839 ILDTLGWLLVEKGEADRALPLLRKAVNIA--------PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44555666677777777777665543321 1122234456777777777777777766553
No 40
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=95.11 E-value=0.067 Score=58.55 Aligned_cols=97 Identities=14% Similarity=0.180 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhccCCCcchHHHHHHHHHHhccCc------------hHHHHHHHHHhhccccccchhhhhHHHhhccCCC
Q 000492 895 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 962 (1463)
Q Consensus 895 ~~Al~~Yl~sL~~~~~~~~~~~~RllsLW~~~~~------------~~~v~~~~~~~~~~vps~kfl~~lpQL~sRl~~~ 962 (1463)
..|+.-|++|+.+++......+..++.-|-..+. ++.|.....+.+.+.|...++..+||||..|...
T Consensus 43 p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~aL~LL~~~~~~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQaLr~E 122 (184)
T smart00145 43 PKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPEDALELLSPKFPDPFVRAYAVERLESASDEELLLYLLQLVQALKYE 122 (184)
T ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHHHHHhCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcc
Confidence 4689899999999998877788999999976642 4568888889999999999999999999999875
Q ss_pred ccccccccHHHHHHHHHHHHHHhCCh---hHHHHHHhh
Q 000492 963 KDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLAL 997 (1463)
Q Consensus 963 ~~~~~~~~f~~~L~~ll~~i~~~hP~---~~l~~l~~~ 997 (1463)
.. ....|..+|.+.|...|. +.+|.|.+.
T Consensus 123 ~~------~~~~L~~fLl~ra~~s~~~~~~l~W~L~~e 154 (184)
T smart00145 123 PY------LDSALARFLLERALKNQRLGHFFYWYLKSE 154 (184)
T ss_pred cc------cccHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 21 125799999999999886 456666543
No 41
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=94.70 E-value=0.044 Score=59.10 Aligned_cols=96 Identities=16% Similarity=0.230 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhccCCCcchHHHHHHHHHHhccCc------------hHHHHHHHHHhhccccccchhhhhHHHhhccCCC
Q 000492 895 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 962 (1463)
Q Consensus 895 ~~Al~~Yl~sL~~~~~~~~~~~~RllsLW~~~~~------------~~~v~~~~~~~~~~vps~kfl~~lpQL~sRl~~~ 962 (1463)
..|+..+++|+.+.+......+..++.-|-..+. ++.|.+...+.++++|...+...+||||..|.+.
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aLeLL~~~f~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE 117 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQALELLDCNFPDEHVREFAVRCLEKLSDDELLQYLLQLVQVLKYE 117 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcc
Confidence 4689999999999998888889999999977642 3568888899999999999999999999999985
Q ss_pred ccccccccHHHHHHHHHHHHHHhCCh---hHHHHHHh
Q 000492 963 KDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLA 996 (1463)
Q Consensus 963 ~~~~~~~~f~~~L~~ll~~i~~~hP~---~~l~~l~~ 996 (1463)
.. ..+.|..+|.+.+...|. +.+|.+.+
T Consensus 118 ~~------~ds~La~FLl~Ral~n~~igh~lfW~L~~ 148 (171)
T cd00872 118 PY------HDSDLVRFLLKRALRNQRIGHFFFWHLRS 148 (171)
T ss_pred cc------cCCHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 31 235799999999999885 34555543
No 42
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=94.49 E-value=0.065 Score=57.65 Aligned_cols=100 Identities=16% Similarity=0.250 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhccCCCcchHHHHHHHHHHhccCc------------hHHHHHHHHHhhccccccchhhhhHHHhhccCCC
Q 000492 895 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 962 (1463)
Q Consensus 895 ~~Al~~Yl~sL~~~~~~~~~~~~RllsLW~~~~~------------~~~v~~~~~~~~~~vps~kfl~~lpQL~sRl~~~ 962 (1463)
..|+.-|++|+.+.+......+..++.-|-..+. +..|.+...+.+...+...++..+||||..|...
T Consensus 45 p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~aLeLL~~~f~~~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE 124 (166)
T cd00870 45 KKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIEDALELLSPYFTNPVVRKYAVSRLKLASDEELLLYLLQLVQALKYE 124 (166)
T ss_pred cHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHcCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 4689999999999888777778999999987653 4568888899999999999999999999999986
Q ss_pred cccc-ccccHHHHHHHHHHHHHHhCCh---hHHHHH
Q 000492 963 KDAL-GLHNFQFALVSLVKKMAIDHPY---HTIFQL 994 (1463)
Q Consensus 963 ~~~~-~~~~f~~~L~~ll~~i~~~hP~---~~l~~l 994 (1463)
.... +.....+.|..+|.+.|...|. +.+|.|
T Consensus 125 ~~~~~~~~~~~s~La~fLl~Ral~s~~ig~~lfW~L 160 (166)
T cd00870 125 NLDLSPLPRLDSPLADFLIERALKNPKLANFLYWYL 160 (166)
T ss_pred ccccccccccccHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 4200 0001336799999999999886 344544
No 43
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=93.58 E-value=0.13 Score=54.68 Aligned_cols=94 Identities=15% Similarity=0.218 Sum_probs=75.6
Q ss_pred HHHHHHHHHhccCCCcchHHHHHHHHHHhccC------------chHHHHHHHHHhhccccccchhhhhHHHhhccCCCc
Q 000492 896 LALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTK 963 (1463)
Q Consensus 896 ~Al~~Yl~sL~~~~~~~~~~~~RllsLW~~~~------------~~~~v~~~~~~~~~~vps~kfl~~lpQL~sRl~~~~ 963 (1463)
.++.-+++|+...+......+..++.-|-..+ .+..|.....+.+.+.|.......+||||..|..+.
T Consensus 39 ~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~aL~LL~~~~~~~~vr~yAv~~L~~~~~~~l~~ylpQLVQaLkye~ 118 (152)
T cd00864 39 KALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPEDALELLSPKYPDPVVRQYAVRVLESASDDELLLYLPQLVQALKYEP 118 (152)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHHHHHHcCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 67888999999988777778889988886554 245688888899999999999999999999998753
Q ss_pred cccccccHHHHHHHHHHHHHHhCCh---hHHHHHH
Q 000492 964 DALGLHNFQFALVSLVKKMAIDHPY---HTIFQLL 995 (1463)
Q Consensus 964 ~~~~~~~f~~~L~~ll~~i~~~hP~---~~l~~l~ 995 (1463)
. ....|..+|.+.|...|. +.+|.|.
T Consensus 119 ~------~~~~L~~fLl~ra~~s~~~~~~l~W~L~ 147 (152)
T cd00864 119 Y------LDSYLARFLLERALKSQRLGHQLYWNLK 147 (152)
T ss_pred c------CCCHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1 125799999999999886 3455553
No 44
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=91.58 E-value=0.21 Score=54.76 Aligned_cols=96 Identities=16% Similarity=0.189 Sum_probs=74.7
Q ss_pred HHHHHHHHHhccCCCcchHHHHHHHHHHhccC------------chHHHHHHHHHhhccccccchhhhhHHHhhccCCCc
Q 000492 896 LALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTK 963 (1463)
Q Consensus 896 ~Al~~Yl~sL~~~~~~~~~~~~RllsLW~~~~------------~~~~v~~~~~~~~~~vps~kfl~~lpQL~sRl~~~~ 963 (1463)
.|+..+++|+.+.+......+..++.-|=..+ .++.|.....+.++..|...++..+||||.-|....
T Consensus 45 ~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~AL~LL~~~f~~~~VR~yAv~~L~~~~d~~l~~yLpQLVQaLr~e~ 124 (184)
T PF00613_consen 45 EALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDALELLSPNFPDPFVRQYAVRRLESLSDEELLFYLPQLVQALRYEP 124 (184)
T ss_dssp GGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHHHHCTSTT---HHHHHHHHHHHCTS-HHHHHHHHHHHHHHGGGSS
T ss_pred hHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHHHHHHHhhccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHheecc
Confidence 58889999999888776777889998897754 235688888999999999999999999999998752
Q ss_pred cccccccHHHHHHHHHHHHHHhCCh---hHHHHHHhh
Q 000492 964 DALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLAL 997 (1463)
Q Consensus 964 ~~~~~~~f~~~L~~ll~~i~~~hP~---~~l~~l~~~ 997 (1463)
. ....|..+|.+.|...|. +.+|.|.+.
T Consensus 125 ~------~~s~L~~fLl~ra~~s~~ia~~l~W~L~~e 155 (184)
T PF00613_consen 125 Y------HDSPLARFLLRRALKSPRIAHQLFWYLKAE 155 (184)
T ss_dssp S------SS-HHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred c------cccHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 1 125799999999999886 456666543
No 45
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=91.14 E-value=0.4 Score=51.67 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhc-cCCCcchHHHHHHHHHHhccCc------------hHHHHHHHHHhhccccccchhhhhHHHhhccCC
Q 000492 895 GLALEGYKRCLV-IGDKYDVRVVFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGS 961 (1463)
Q Consensus 895 ~~Al~~Yl~sL~-~~~~~~~~~~~RllsLW~~~~~------------~~~v~~~~~~~~~~vps~kfl~~lpQL~sRl~~ 961 (1463)
..|+..|++|+. ++++ ....+..++.-|-..+. +..|.....+.+++.+....+..+||||..|.+
T Consensus 38 p~aLp~~L~s~~~w~~~-~~~e~~~LL~~W~p~~p~~ALeLL~~~f~d~~VR~yAV~~L~~~~ddeL~~yLpQLVQaLky 116 (169)
T cd00869 38 PNALPLVLASAPSWDWA-NLMDVYQLLHQWAPLRPLIALELLLPKFPDQEVRAHAVQWLARLSNDELLDYLPQLVQALKF 116 (169)
T ss_pred cHHHHHHHHhcccCcHH-HHHHHHHHHhCCCCCCHHHHHHHcCCcCCChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 468999999874 4444 34457888888876642 356888889999999999999999999999998
Q ss_pred CccccccccHHHHHHHHHHHHHHhCCh---hHHHHHHh
Q 000492 962 TKDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLA 996 (1463)
Q Consensus 962 ~~~~~~~~~f~~~L~~ll~~i~~~hP~---~~l~~l~~ 996 (1463)
+.. -.+.|..+|.+.+...|. +.+|.|.+
T Consensus 117 E~~------~~s~L~~FLl~RAl~n~~i~h~lfW~Lk~ 148 (169)
T cd00869 117 ELY------LKSALVRFLLSRSLVSLRFAHELYWLLKD 148 (169)
T ss_pred ccc------CcChHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 531 125799999999998876 45566644
No 46
>PLN03218 maturation of RBCL 1; Provisional
Probab=90.34 E-value=50 Score=46.02 Aligned_cols=82 Identities=17% Similarity=0.272 Sum_probs=53.7
Q ss_pred chHHHHHHHHHhhCCCchhhhhhhcc----------cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCC
Q 000492 380 PRHIEILVSAVTQINEPDSLYGIIQS----------HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSP 449 (1463)
Q Consensus 380 ~~~~e~L~~Iy~~IdePD~~yGi~~~----------~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~ 449 (1463)
......|+..|.+.++.|.+..+... ......|.-|-+.|++++|+..|+.-.+.+
T Consensus 472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G-------------- 537 (1060)
T PLN03218 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN-------------- 537 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC--------------
Confidence 34567788888888888877766531 123466778888888888888887765532
Q ss_pred CCCCccCCCCCchhhhhhccchhhHHHHHHHhhchhhHHHH
Q 000492 450 HGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDM 490 (1463)
Q Consensus 450 ~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~ 490 (1463)
..|+ ...+..+++++-..|..+....
T Consensus 538 -v~PD--------------~vTYnsLI~a~~k~G~~deA~~ 563 (1060)
T PLN03218 538 -VKPD--------------RVVFNALISACGQSGAVDRAFD 563 (1060)
T ss_pred -CCCC--------------HHHHHHHHHHHHHCCCHHHHHH
Confidence 2244 1235677888777776665433
No 47
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=90.08 E-value=33 Score=45.63 Aligned_cols=290 Identities=10% Similarity=0.051 Sum_probs=146.0
Q ss_pred hHHHHHHHHHhhCCCchhhhhhhcc------cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCc
Q 000492 381 RHIEILVSAVTQINEPDSLYGIIQS------HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPS 454 (1463)
Q Consensus 381 ~~~e~L~~Iy~~IdePD~~yGi~~~------~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~ 454 (1463)
.....|++.|.+-++.|.+..+... ...+..+.-|.+.|++++|+..|+.-.+.+ ..|+
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g---------------~~pd 324 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG---------------VSID 324 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------------CCCC
Confidence 4567899999999999999888752 134578899999999999999998765533 2244
Q ss_pred cCCCCCchhhhhhccchhhHHHHHHHhhchhhHHHHhhhccccccCCCCCCcchhHHHHHHHhccCCCCCCccccCCCCC
Q 000492 455 VHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFP 534 (1463)
Q Consensus 455 ~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrLg~WD~~~~~~~~~~~ 534 (1463)
. ..+..+++++-.+|..+......+.+.... ...+....-.-..+--+.|+++.....- .. +
T Consensus 325 --------~------~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g--~~~d~~~~~~Li~~y~k~G~~~~A~~vf-~~-m 386 (697)
T PLN03081 325 --------Q------FTFSIMIRIFSRLALLEHAKQAHAGLIRTG--FPLDIVANTALVDLYSKWGRMEDARNVF-DR-M 386 (697)
T ss_pred --------H------HHHHHHHHHHHhccchHHHHHHHHHHHHhC--CCCCeeehHHHHHHHHHCCCHHHHHHHH-Hh-C
Confidence 1 135678999888887665432222222111 1111111222233344455554322211 10 0
Q ss_pred CCCCcccchhhhhHHHHHHHH-hcCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH-HHHHhHHHHHHHhhhhc
Q 000492 535 SGQNIKSGHFHENLHSCLTAL-REGDSEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVK-LQILCHLGVAWDIRWKS 612 (1463)
Q Consensus 535 ~~~~~~~~~f~~~L~~~L~al-~~~d~~~~~~~i~~aR~~l~~~Lsa~s~ESy~~~Y~~lvr-Lq~L~ELe~i~~l~~~~ 612 (1463)
..++...|+..+ .+. +.|+.+++.+..+..... .+ .--...|..++. +-....+++..++....
T Consensus 387 --~~~d~~t~n~lI----~~y~~~G~~~~A~~lf~~M~~~---g~-----~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 387 --PRKNLISWNALI----AGYGNHGRGTKAVEMFERMIAE---GV-----APNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred --CCCCeeeHHHHH----HHHHHcCCHHHHHHHHHHHHHh---CC-----CCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 012334454432 222 568888888888765432 11 101111333332 11122222222221111
Q ss_pred cCCccccccccccccCCCCCcchhhhhHHHHHHHHHHHhhccchhhhhhhHHHHHHHHHhhccchHHHHHHHHHHHHHHh
Q 000492 613 SGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRK 692 (1463)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~~q~~~~~~EpiL~~R~~vl~il~~~~~~~~~wl~~A~laRk 692 (1463)
... ..+.|....-..+.+...+ ..+++ |. ... ++-.+. .....+|-.....|++
T Consensus 453 ~~~-------------~g~~p~~~~y~~li~~l~r-----~G~~~--eA----~~~-~~~~~~-~p~~~~~~~Ll~a~~~ 506 (697)
T PLN03081 453 SEN-------------HRIKPRAMHYACMIELLGR-----EGLLD--EA----YAM-IRRAPF-KPTVNMWAALLTACRI 506 (697)
T ss_pred HHh-------------cCCCCCccchHhHHHHHHh-----cCCHH--HH----HHH-HHHCCC-CCCHHHHHHHHHHHHH
Confidence 000 0000110001111111110 01111 11 111 111111 2245568888899999
Q ss_pred cCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhh
Q 000492 693 GFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISEN 751 (1463)
Q Consensus 693 ag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~ 751 (1463)
.|++..|..+..++..+... +.....-.++.+=..|+.++|.++.+.+..+
T Consensus 507 ~g~~~~a~~~~~~l~~~~p~--------~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 507 HKNLELGRLAAEKLYGMGPE--------KLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred cCCcHHHHHHHHHHhCCCCC--------CCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999887776544211 1111223467777889999999988777654
No 48
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=89.64 E-value=87 Score=41.81 Aligned_cols=66 Identities=18% Similarity=0.011 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 000492 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 752 (1463)
Q Consensus 679 ~~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~~ 752 (1463)
....|...+.+..+.|++..|...+..+.... +.+.......+.++...|+...|+..++..+...
T Consensus 668 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--------PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 45567777777888888888777666554321 1111223446777778888888888777666543
No 49
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=87.76 E-value=1.1e+02 Score=40.68 Aligned_cols=113 Identities=7% Similarity=-0.005 Sum_probs=76.8
Q ss_pred CHHHHHHHHHhhCchhhhhhhhHhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCCchhhhhhhcc-----c--
Q 000492 334 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-- 406 (1463)
Q Consensus 334 d~~~lA~aA~~C~AyatALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~-----~-- 406 (1463)
+...++.+..+-|.+..|+-..+...... ...++.+..|.-..-..+++|.+.-.... +
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--------------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~ 109 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA--------------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ 109 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC--------------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC
Confidence 56788889999999999998888654321 12234455566666667777776666431 1
Q ss_pred --chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhch
Q 000492 407 --KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGC 484 (1463)
Q Consensus 407 --~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~ 484 (1463)
-......-|-..|++++|+..|+..++.. |+ +...+..+.+++...|.
T Consensus 110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-----------------P~-------------~~~a~~~la~~l~~~g~ 159 (656)
T PRK15174 110 PEDVLLVASVLLKSKQYATVADLAEQAWLAF-----------------SG-------------NSQIFALHLRTLVLMDK 159 (656)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------CC-------------cHHHHHHHHHHHHHCCC
Confidence 12234567888999999999999998854 33 12245677888999998
Q ss_pred hhHHHH
Q 000492 485 MHVLDM 490 (1463)
Q Consensus 485 ~~~L~~ 490 (1463)
.+....
T Consensus 160 ~~eA~~ 165 (656)
T PRK15174 160 ELQAIS 165 (656)
T ss_pred hHHHHH
Confidence 765543
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=87.35 E-value=62 Score=39.92 Aligned_cols=59 Identities=14% Similarity=-0.088 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHH
Q 000492 680 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKY 747 (1463)
Q Consensus 680 ~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~ 747 (1463)
....+-.+++|-+.|.+..|...+..+.... |.. ...++.|.+++..|++..|.++-+.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~-------P~~--~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQR-------PDA--YDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCH--HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4445667899999999999999987764331 111 2236799999999999999887653
No 51
>PLN03218 maturation of RBCL 1; Provisional
Probab=86.79 E-value=40 Score=46.86 Aligned_cols=300 Identities=12% Similarity=0.125 Sum_probs=158.0
Q ss_pred CHHHHHHHHHhhCchhhhhhhhHhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCCchhhhhhhcc-------c
Q 000492 334 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-------H 406 (1463)
Q Consensus 334 d~~~lA~aA~~C~AyatALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~-------~ 406 (1463)
-|..+-.+..+||.+..|+-.++.-... + ..+.......|+..|.+.++.|.+..+... +
T Consensus 474 tynsLI~~y~k~G~vd~A~~vf~eM~~~-------G------v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P 540 (1060)
T PLN03218 474 LYTTLISTCAKSGKVDAMFEVFHEMVNA-------G------VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP 540 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHc-------C------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC
Confidence 4667888888999999998777652211 0 123345678999999999999998877531 1
Q ss_pred ---chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhc
Q 000492 407 ---KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVG 483 (1463)
Q Consensus 407 ---~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG 483 (1463)
.....+.-|-+.|++++|+..|+.-...... ..|+ ...+.-++.++-..|
T Consensus 541 D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-------------i~PD--------------~vTynaLI~ay~k~G 593 (1060)
T PLN03218 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHP-------------IDPD--------------HITVGALMKACANAG 593 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC-------------CCCc--------------HHHHHHHHHHHHHCC
Confidence 3557889999999999999999886553110 2244 113567889999999
Q ss_pred hhhHHHHhhhccccccCCCCCCcchhHHHHHHHhccCCCCCCccccCCCCCCCCCcccchhhhhHHHHHHHHhcCChHHH
Q 000492 484 CMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEF 563 (1463)
Q Consensus 484 ~~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrLg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~~L~al~~~d~~~~ 563 (1463)
.++......+.+.... ........-....+-=+.|+++.............-.++...|+..+ .+ ..+.|+.+.+
T Consensus 594 ~ldeA~elf~~M~e~g--i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI-~a--~~k~G~~eeA 668 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYN--IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALV-DV--AGHAGDLDKA 668 (1060)
T ss_pred CHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HH--HHhCCCHHHH
Confidence 8776544444433221 11111111222333345666654332111100011123433443322 11 2256788888
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHHH
Q 000492 564 YRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNT 643 (1463)
Q Consensus 564 ~~~i~~aR~~l~~~Lsa~s~ESy~~~Y~~lvrLq~L~ELe~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 643 (1463)
.+.++.++.. .+ ......|..+-....+...+.+-.++.+ .... .+ ..| + ..
T Consensus 669 ~~l~~eM~k~---G~-~pd~~tynsLI~ay~k~G~~eeA~~lf~---eM~~--------~g---~~P---d-------vv 720 (1060)
T PLN03218 669 FEILQDARKQ---GI-KLGTVSYSSLMGACSNAKNWKKALELYE---DIKS--------IK---LRP---T-------VS 720 (1060)
T ss_pred HHHHHHHHHc---CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHH---HHHH--------cC---CCC---C-------HH
Confidence 8777765532 11 1112233333333333333333333322 1100 00 011 1 13
Q ss_pred HHHHHHHhhccchhhhhhhHHHHHHHHHhhccchHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 000492 644 EWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFL 709 (1463)
Q Consensus 644 ~W~~rl~~~q~~~~~~EpiL~~R~~vl~il~~~~~~~~~wl~~A~laRkag~~~~A~~aL~~l~~l 709 (1463)
+|...+.+.-..-.+-+.+--++...-.=+.+...+...+ ...|.+.|++..|...+.++...
T Consensus 721 tyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL---L~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL---LVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHc
Confidence 5777777664444433433333322111011223333333 36788899999999888777643
No 52
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=81.38 E-value=2.6e+02 Score=39.67 Aligned_cols=66 Identities=15% Similarity=-0.074 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 000492 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 752 (1463)
Q Consensus 679 ~~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~~ 752 (1463)
....++..+.+..+.|++..|...+..+.... |.+..+....|.++=..|+..+|+..++.++...
T Consensus 636 ~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 636 NADARLGLIEVDIAQGDLAAARAQLAKLPATA--------NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 35567788888889999999988877653221 1122233445666668899999999888877644
No 53
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=80.74 E-value=69 Score=42.58 Aligned_cols=283 Identities=11% Similarity=0.048 Sum_probs=154.7
Q ss_pred HHHHHHHHHhhCchhhhhhhhHhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCCchhhhhhhc----------
Q 000492 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ---------- 404 (1463)
Q Consensus 335 ~~~lA~aA~~C~AyatALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~---------- 404 (1463)
+..|..+-.+||-+..|...++.- .++.......|+..|.+-+++|.+..+..
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m-----------------~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGM-----------------PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC-----------------CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 456677778899999998777631 11223456789999999999999888763
Q ss_pred ccchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhch
Q 000492 405 SHKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGC 484 (1463)
Q Consensus 405 ~~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~ 484 (1463)
..+....+..|-+.|++++|...|+...+.+ ..|+ ...+..++..+-..|.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g---------------~~~d--------------~~~~~~Li~~y~k~G~ 375 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTG---------------FPLD--------------IVANTALVDLYSKWGR 375 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhC---------------CCCC--------------eeehHHHHHHHHHCCC
Confidence 1245678899999999999999999887753 1132 1235678888888887
Q ss_pred hhHHHHhhhccccccCCCCCCcchhHHHHHHHhccCCCCCCccccCCCCCCCCCcccchhhhhHHHHHHH-HhcCChHHH
Q 000492 485 MHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTA-LREGDSEEF 563 (1463)
Q Consensus 485 ~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrLg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~~L~a-l~~~d~~~~ 563 (1463)
.+......+.+.... -..+. ....+-=+.|+++...............++...|... |.+ .|.|+.++.
T Consensus 376 ~~~A~~vf~~m~~~d-----~~t~n-~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l----l~a~~~~g~~~~a 445 (697)
T PLN03081 376 MEDARNVFDRMPRKN-----LISWN-ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV----LSACRYSGLSEQG 445 (697)
T ss_pred HHHHHHHHHhCCCCC-----eeeHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHH----HHHHhcCCcHHHH
Confidence 666544333332110 00111 1122222334443221110000000112344444432 233 366888887
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHHH
Q 000492 564 YRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNT 643 (1463)
Q Consensus 564 ~~~i~~aR~~l~~~Lsa~s~ESy~~~Y~~lvrLq~L~ELe~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 643 (1463)
.+..+.....- .+ .-..+.|...-+.+.|...+.|-.++++ + .|..|+ ..
T Consensus 446 ~~~f~~m~~~~--g~-~p~~~~y~~li~~l~r~G~~~eA~~~~~---~-----------------~~~~p~-------~~ 495 (697)
T PLN03081 446 WEIFQSMSENH--RI-KPRAMHYACMIELLGREGLLDEAYAMIR---R-----------------APFKPT-------VN 495 (697)
T ss_pred HHHHHHHHHhc--CC-CCCccchHhHHHHHHhcCCHHHHHHHHH---H-----------------CCCCCC-------HH
Confidence 77777654320 11 0112344444444444444444444432 1 011112 13
Q ss_pred HHHHHHHhhcc--chhhhhhhHHHHHHHHHhhccchHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 000492 644 EWSSILKRTQL--HMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFL 709 (1463)
Q Consensus 644 ~W~~rl~~~q~--~~~~~EpiL~~R~~vl~il~~~~~~~~~wl~~A~laRkag~~~~A~~aL~~l~~l 709 (1463)
.|...+..+.. +++.-+ . +.-.++++......++...+++.-++|++..|.+.+.+++..
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~--~----~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 496 MWAALLTACRIHKNLELGR--L----AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHcCCcHHHH--H----HHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 68888887753 333221 1 222222322222344555678889999999999988777643
No 54
>PF13575 DUF4135: Domain of unknown function (DUF4135)
Probab=79.21 E-value=10 Score=46.33 Aligned_cols=111 Identities=21% Similarity=0.189 Sum_probs=82.9
Q ss_pred CCCceEeeeeecCCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEEcCCCCceeEEcCCCCchHHHhhhhcc
Q 000492 1127 SDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTR 1206 (1463)
Q Consensus 1127 sdG~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~tl~~il~~~~~ 1206 (1463)
++|. +++.|+ -+++-|.....++..+|.-.... .+.++++++++-+..-|-.|||++..--
T Consensus 68 ~~g~--kivYKP--Rsl~~d~~f~~l~~~ln~~~~~~------~~~l~~~~~l~~g~~YgW~EfI~~~~c~--------- 128 (370)
T PF13575_consen 68 SSGK--KIVYKP--RSLSIDKAFNDLLEWLNEKNGTP------SLDLPTPKVLDRGDGYGWQEFIEHEPCN--------- 128 (370)
T ss_pred CCCC--EEEEeC--cccHHHHHHHHHHHHHhhhcccc------ccccccceeeeccCcceeEEEecCCCCC---------
Confidence 3553 567886 68999999999999999864321 3678888999987779999999862110
Q ss_pred CCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheecc
Q 000492 1207 NGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGL 1286 (1463)
Q Consensus 1207 ~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~f~~~~~w~~~R~~ft~S~A~~S~vgyILGL 1286 (1463)
+.. + -.+|=+-++....+.|+||.
T Consensus 129 -----------------------~~~---e------------------------------v~~yY~r~G~llal~y~L~~ 152 (370)
T PF13575_consen 129 -----------------------SEE---E------------------------------VERYYYRLGVLLALLYLLNG 152 (370)
T ss_pred -----------------------CHH---H------------------------------HHHHHHHHHHHHHHHHHhCC
Confidence 000 0 01344567788889999999
Q ss_pred CCCCCCeEEEecCCCcEEEeecchhhcc
Q 000492 1287 GDRHAMNILIDQATAEVVHIDLGVAFEQ 1314 (1463)
Q Consensus 1287 GDRH~~NILld~~tG~vvhIDfg~~F~~ 1314 (1463)
.|=|-+||.-+ -+..|=||+-..|..
T Consensus 153 ~DlH~ENIIa~--g~~PvlIDlETlf~~ 178 (370)
T PF13575_consen 153 TDLHFENIIAS--GEYPVLIDLETLFHP 178 (370)
T ss_pred CcccccceEEe--CCCcEEEehhhhCCc
Confidence 99999999997 478899999888875
No 55
>PLN03077 Protein ECB2; Provisional
Probab=76.32 E-value=3e+02 Score=37.59 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhhCCCchhhhhhhcc------cchhhHHHHHHhhCCHHHHHHHHHHHH
Q 000492 381 RHIEILVSAVTQINEPDSLYGIIQS------HKLSSQIVTLEHEGNWSKALEYYELQV 432 (1463)
Q Consensus 381 ~~~e~L~~Iy~~IdePD~~yGi~~~------~~l~~~i~~yE~eg~W~kAL~~Yd~~l 432 (1463)
.....|++.|.+.++.|.+.-+... .+.+..+.-|.+.|++++|+..|+.-.
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455677777777777776666531 124456667777777777777776654
No 56
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=75.58 E-value=2.2e+02 Score=37.76 Aligned_cols=67 Identities=16% Similarity=-0.007 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 000492 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 753 (1463)
Q Consensus 679 ~~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~~~ 753 (1463)
....|...+.++.+.|+++.|...+.++..+. |....+..-.+..+...|+...|+..++.++...+
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--------P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATH--------PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 45678888999999999999998887765442 11222345578999999999999999988776543
No 57
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=75.20 E-value=7 Score=42.51 Aligned_cols=63 Identities=11% Similarity=0.072 Sum_probs=52.3
Q ss_pred chHHHHHHHHHhhccccccchhhhhHHHhhccCCCccccccccHHHHHHHHHHHHHHhCCh---hHHHHHHhhc
Q 000492 928 SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALA 998 (1463)
Q Consensus 928 ~~~~v~~~~~~~~~~vps~kfl~~lpQL~sRl~~~~~~~~~~~f~~~L~~ll~~i~~~hP~---~~l~~l~~~~ 998 (1463)
.++.|.....+.+.+.|....+..+|||+..|..... ..|..+|.+.+...+. +.+|.|.+-+
T Consensus 83 ~~~~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLryd~~--------~~l~~FLl~~A~~s~~faHql~W~lkae~ 148 (175)
T cd00871 83 GHPLVLQYAVRVLESYPVETVFFYIPQIVQALRYDKM--------GYVEEYILETAKRSQLFAHQIIWNMQTNC 148 (175)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccc--------chHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999998532 3689999999887654 6778776643
No 58
>TIGR02906 spore_CotS spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.
Probab=71.73 E-value=54 Score=38.53 Aligned_cols=31 Identities=26% Similarity=0.106 Sum_probs=26.1
Q ss_pred hhhheeccCCCCCCeEEEecCCCcEEEeecchh
Q 000492 1279 MVGYIVGLGDRHAMNILIDQATAEVVHIDLGVA 1311 (1463)
Q Consensus 1279 ~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~ 1311 (1463)
...+.+-=||=|++||+++. |.+.-|||+.+
T Consensus 184 ~~~~~liHgD~~~~Nil~~~--~~i~lIDfd~~ 214 (313)
T TIGR02906 184 KKIRGFCHQDYAYHNILLKD--NEVYVIDFDYC 214 (313)
T ss_pred cCcCceEcCCCCcccEEEeC--CcEEEEECccc
Confidence 34577789999999999996 78999999954
No 59
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=71.06 E-value=4.8 Score=44.07 Aligned_cols=48 Identities=27% Similarity=0.324 Sum_probs=35.7
Q ss_pred CCCCCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCcccccchhhccccccccchhHHHHHHHHHHHhc
Q 000492 1287 GDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRT 1358 (1463)
Q Consensus 1287 GDRH~~NILld~~tG~vvhIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~F~~~c~~t~~~LR~ 1358 (1463)
+|-||+|||++ +|++.=||||.+-.. +.| ...|.+++-++.++..+|+
T Consensus 142 rDlkP~NIll~--~~~~~liDFG~a~~~----~~~------------------~~~~~~~~~~~~~~~~~~~ 189 (190)
T cd05145 142 GDLSEYNILYH--DGKPYIIDVSQAVEL----DHP------------------NALEFLRRDIRNINRFFRK 189 (190)
T ss_pred CCCChhhEEEE--CCCEEEEEcccceec----CCC------------------CHHHHHHHHHHHHHHHhhc
Confidence 79999999998 799999999976431 111 3445677777777777665
No 60
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=70.60 E-value=21 Score=31.44 Aligned_cols=61 Identities=16% Similarity=-0.008 Sum_probs=46.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 000492 685 ESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 753 (1463)
Q Consensus 685 ~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~~~ 753 (1463)
..|...-+.|++..|.+.+.++... .|.+..+.+..+.+++.+|+...|+..++..++..+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3577888999999999998876432 233445568899999999999999999988776544
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=70.42 E-value=47 Score=39.28 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=63.3
Q ss_pred HHHHHHHHhhCchhhhhhhhHhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCCchhhhhhhcc-----c----
Q 000492 336 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H---- 406 (1463)
Q Consensus 336 ~~lA~aA~~C~AyatALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~-----~---- 406 (1463)
..+|+.=.+-|+|-+|=-++..... ..+.++..-+|-.+|..||+|..+--+... +
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~---------------q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT 291 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT---------------QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT 291 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh---------------cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh
Confidence 3678888888888887555543221 124477788999999999999987655431 1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000492 407 KLSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1463)
Q Consensus 407 ~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1463)
-+.-+.+-||-.|+.++|+..|...+...
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~ 320 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVLKLH 320 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 24467799999999999999999998854
No 62
>PLN03077 Protein ECB2; Provisional
Probab=69.05 E-value=4.3e+02 Score=36.12 Aligned_cols=155 Identities=12% Similarity=-0.011 Sum_probs=87.9
Q ss_pred cchHHHHHHHHHhhCCCchhhhhhhcc------cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCC
Q 000492 379 LPRHIEILVSAVTQINEPDSLYGIIQS------HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGL 452 (1463)
Q Consensus 379 ~~~~~e~L~~Iy~~IdePD~~yGi~~~------~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~ 452 (1463)
.......|+..|.+.++.|.+..+... .+.+..+.-|-+.|++++|+..|+.-.+.+ ..
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g---------------~~ 386 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN---------------VS 386 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC---------------CC
Confidence 355678899999999999998888652 235678899999999999999998765533 23
Q ss_pred CccCCCCCchhhhhhccchhhHHHHHHHhhchhhHHHHhhhccccccCCCCCCcchhHHHHHHHhccCCCCCCccccCCC
Q 000492 453 PSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGAN 532 (1463)
Q Consensus 453 p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrLg~WD~~~~~~~~~ 532 (1463)
|+ + ..+..++.++-..|..+......+-..... ...+......-..+--+.|+++....+-..
T Consensus 387 Pd--------~------~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g--~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~- 449 (857)
T PLN03077 387 PD--------E------ITIASVLSACACLGDLDVGVKLHELAERKG--LISYVVVANALIEMYSKCKCIDKALEVFHN- 449 (857)
T ss_pred CC--------c------eeHHHHHHHHhccchHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHHcCCHHHHHHHHHh-
Confidence 55 1 135678888888886655432222111110 111111222233445556666543322111
Q ss_pred CCCCCCcccchhhhhHHHHHHHHhcCChHHHHHHHHHHH
Q 000492 533 FPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSK 571 (1463)
Q Consensus 533 ~~~~~~~~~~~f~~~L~~~L~al~~~d~~~~~~~i~~aR 571 (1463)
+ ...+...|+..+ .+ ..+.|+.+++....+..+
T Consensus 450 -m--~~~d~vs~~~mi-~~--~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 450 -I--PEKDVISWTSII-AG--LRLNNRCFEALIFFRQML 482 (857)
T ss_pred -C--CCCCeeeHHHHH-HH--HHHCCCHHHHHHHHHHHH
Confidence 1 012333454432 11 124567777766666554
No 63
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.15 E-value=3.6e+02 Score=34.90 Aligned_cols=90 Identities=20% Similarity=0.175 Sum_probs=60.4
Q ss_pred ccCHHHHHHHHHhhCchhhhhhhhHhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCCchhhh-hhhc----cc
Q 000492 332 SVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLY-GIIQ----SH 406 (1463)
Q Consensus 332 ~Id~~~lA~aA~~C~AyatALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~y-Gi~~----~~ 406 (1463)
+.|-+.||..-.+-|-|..|+-|.-+-..+ + ....+..-+|-.||.|..+-|.-. |... .+
T Consensus 48 ~~~~l~lah~~yq~gd~~~a~~h~nmv~~~--------d------~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~ 113 (966)
T KOG4626|consen 48 SDDRLELAHRLYQGGDYKQAEKHCNMVGQE--------D------PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP 113 (966)
T ss_pred chhHHHHHHHHHhccCHHHHHHHHhHhhcc--------C------CCcccceeeehhhhhcccchhhhhhhhhhhhhccc
Confidence 567889999999999999998777664322 1 111233345777899888888543 2221 01
Q ss_pred ----chhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000492 407 ----KLSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1463)
Q Consensus 407 ----~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1463)
.......-|.--|+.++||..|+..++.+
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~ 146 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELK 146 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC
Confidence 12233445666789999999999999965
No 64
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=67.25 E-value=12 Score=33.15 Aligned_cols=56 Identities=20% Similarity=-0.011 Sum_probs=42.1
Q ss_pred HhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhccC
Q 000492 691 RKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYES 754 (1463)
Q Consensus 691 Rkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~~~~ 754 (1463)
-+.|+++.|...+.++.... |.+..+.+..|+++..+|+.+.|..+++.+....+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 46788999998887765432 223345788999999999999999999888776543
No 65
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=66.84 E-value=58 Score=36.94 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=21.9
Q ss_pred eccCCCCCCeEEEecCCCcEEEeecchh
Q 000492 1284 VGLGDRHAMNILIDQATAEVVHIDLGVA 1311 (1463)
Q Consensus 1284 LGLGDRH~~NILld~~tG~vvhIDfg~~ 1311 (1463)
+-=||=||.||+++. +| +.=|||+.+
T Consensus 155 ~~HgD~~~~Nii~~~-~~-~~iIDwe~a 180 (226)
T TIGR02172 155 CLHGDFQIGNLITSG-KG-TYWIDLGDF 180 (226)
T ss_pred eEecCCCCCcEEEcC-CC-cEEEechhc
Confidence 346999999999986 56 999999865
No 66
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=66.59 E-value=2.3e+02 Score=37.10 Aligned_cols=51 Identities=16% Similarity=0.074 Sum_probs=35.6
Q ss_pred HhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHH
Q 000492 691 RKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYIS 749 (1463)
Q Consensus 691 Rkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~ 749 (1463)
+..|++..|...+.++..+. |....+.+..+++++.+|+..+|+..++..+
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~--------p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIID--------PECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44588888888776654332 1122244667999999999999999876544
No 67
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=62.32 E-value=4.7 Score=44.42 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.2
Q ss_pred CCCCCCeEEEecCCCcEEEeecchhhc
Q 000492 1287 GDRHAMNILIDQATAEVVHIDLGVAFE 1313 (1463)
Q Consensus 1287 GDRH~~NILld~~tG~vvhIDfg~~F~ 1313 (1463)
||-+|+|||++ +|++.=||||.+-.
T Consensus 142 rDlkP~NIli~--~~~v~LiDFG~a~~ 166 (190)
T cd05147 142 ADLSEYNLLYH--DGKLYIIDVSQSVE 166 (190)
T ss_pred CCCCHHHEEEE--CCcEEEEEcccccc
Confidence 89999999998 59999999997643
No 68
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=61.70 E-value=18 Score=36.91 Aligned_cols=55 Identities=13% Similarity=0.148 Sum_probs=39.1
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhchhhHHHHh
Q 000492 412 IVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMY 491 (1463)
Q Consensus 412 i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~~ 491 (1463)
..-|...|+.++|..+|+..+..+.. ++ ...+...++-.+|.++|..+.....
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~---------------~~------------~~~~a~i~lastlr~LG~~deA~~~ 60 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLS---------------GA------------DRRRALIQLASTLRNLGRYDEALAL 60 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC---------------ch------------HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35678899999999999999985311 11 1234567888999999987765443
Q ss_pred hh
Q 000492 492 CK 493 (1463)
Q Consensus 492 ~~ 493 (1463)
.+
T Consensus 61 L~ 62 (120)
T PF12688_consen 61 LE 62 (120)
T ss_pred HH
Confidence 33
No 69
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=61.04 E-value=3.6e+02 Score=32.45 Aligned_cols=294 Identities=14% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHHHhhCchhhhhhhhHhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCCchhhhhhhcc-----------
Q 000492 337 RVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS----------- 405 (1463)
Q Consensus 337 ~lA~aA~~C~AyatALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~----------- 405 (1463)
..|..+..++.|..|+-+++..... ........-.|-.+|...++.|.+.-+...
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~--------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 105 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKV--------------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ 105 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhc--------------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH
Q ss_pred --cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhc
Q 000492 406 --HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVG 483 (1463)
Q Consensus 406 --~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG 483 (1463)
........-|.+.|++++|+.+|+..++..+. +......+..++...|
T Consensus 106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~------------------------------~~~~~~~la~~~~~~g 155 (389)
T PRK11788 106 RLLALQELGQDYLKAGLLDRAEELFLQLVDEGDF------------------------------AEGALQQLLEIYQQEK 155 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcc------------------------------hHHHHHHHHHHHHHhc
Q ss_pred hhhHHHHhhhccccccCCCCCCcchhHHHHHHHhccCCCCCCccccCCCCCCCCCcccchhhhhHHHHHHHHhcCChHHH
Q 000492 484 CMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEF 563 (1463)
Q Consensus 484 ~~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrLg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~~L~al~~~d~~~~ 563 (1463)
.++......+.+..... .............-+......|+++++
T Consensus 156 ~~~~A~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 156 DWQKAIDVAERLEKLGG------------------------------------DSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred hHHHHHHHHHHHHHhcC------------------------------------CcchHHHHHHHHHHHHHHHhCCCHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHHH
Q 000492 564 YRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNT 643 (1463)
Q Consensus 564 ~~~i~~aR~~l~~~Lsa~s~ESy~~~Y~~lvrLq~L~ELe~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 643 (1463)
...++++... ...+....+....-.......+++.+
T Consensus 200 ~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~------------------------------------ 235 (389)
T PRK11788 200 RALLKKALAA--------DPQCVRASILLGDLALAQGDYAAAIE------------------------------------ 235 (389)
T ss_pred HHHHHHHHhH--------CcCCHHHHHHHHHHHHHCCCHHHHHH------------------------------------
Q ss_pred HHHHHHHhhccchhhhhhhHHHHHHHHHhhccchHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhh
Q 000492 644 EWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWL 723 (1463)
Q Consensus 644 ~W~~rl~~~q~~~~~~EpiL~~R~~vl~il~~~~~~~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~ 723 (1463)
.+.+.+.... ......+...+.+..+.|+...|...+.++..+ .|....
T Consensus 236 ~~~~~~~~~p-----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~~~ 284 (389)
T PRK11788 236 ALERVEEQDP-----------------------EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--------YPGADL 284 (389)
T ss_pred HHHHHHHHCh-----------------------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchH
Q ss_pred HhHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhhHHHHHhHHHHHh---hcCChHHHHHhhhchhc
Q 000492 724 GRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAES---RSSNSRIILENYLKPAV 789 (1463)
Q Consensus 724 a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~~~~~~~~a~l~~l~g~wlaet---~~e~~~~I~~~Y~~~a~ 789 (1463)
. .-.++++..+|+...|+..++..++. .+....+..+++.++... +..+.-.+++..++..+
T Consensus 285 ~-~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 285 L-LALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred H-HHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
No 70
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=59.69 E-value=6.3 Score=49.81 Aligned_cols=38 Identities=32% Similarity=0.493 Sum_probs=28.9
Q ss_pred hhhccch--hhheeccCCCCCCeEEEecCCCcEEEeecchhhc
Q 000492 1273 SVAASSM--VGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFE 1313 (1463)
Q Consensus 1273 S~A~~S~--vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~ 1313 (1463)
+||+=|+ +||| =-|--|+|||||+ .|++=-.|||.|-+
T Consensus 739 tcAiesVHkmGFI--HRDiKPDNILIDr-dGHIKLTDFGLCTG 778 (1034)
T KOG0608|consen 739 TCAIESVHKMGFI--HRDIKPDNILIDR-DGHIKLTDFGLCTG 778 (1034)
T ss_pred HHHHHHHHhccce--ecccCccceEEcc-CCceeeeecccccc
Confidence 4555555 3333 3588899999997 99999999999854
No 71
>KOG3365 consensus NADH:ubiquinone oxidoreductase, NDUFA5/B13 subunit [Energy production and conversion]
Probab=58.99 E-value=5.8 Score=40.67 Aligned_cols=37 Identities=22% Similarity=0.543 Sum_probs=32.6
Q ss_pred HHHHHHhhcCCCCCCCccCHHHHHHHHHHHhcCchhhhhhCcccccC
Q 000492 1416 ALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAW 1462 (1463)
Q Consensus 1416 ~l~rv~~kL~g~~~~~~lsv~~qV~~LI~~Atd~~nL~~m~~gW~Pw 1462 (1463)
.++.++++|.| |||.++|.||-+.=|+.+|-..|.||
T Consensus 93 d~K~ledql~g----------GqIEE~i~qa~~el~m~~k~~~wk~w 129 (145)
T KOG3365|consen 93 DVKKLEDQLQG----------GQIEEVIEQAEAELNMGRKMFEWKPW 129 (145)
T ss_pred HHHHHHHHhcC----------CchHHHHHHHHHHHHHHhhhhccccc
Confidence 46667777766 68999999999999999999999999
No 72
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=56.31 E-value=51 Score=29.51 Aligned_cols=60 Identities=17% Similarity=-0.048 Sum_probs=46.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhccCC
Q 000492 688 STLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESN 755 (1463)
Q Consensus 688 ~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~~~~~ 755 (1463)
.++...++++.|...+-.+..+. |.+....+..|.++...|+...|+..++..++..+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--------PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 56678889999998887765442 2233456789999999999999999998888765533
No 73
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=55.20 E-value=10 Score=43.09 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=38.7
Q ss_pred hhhccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhccccCC
Q 000492 1273 SVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML 1318 (1463)
Q Consensus 1273 S~A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~g~~l 1318 (1463)
.+.-|+++=+++.=.|||..|||..+ +|+++-||=|+||.....|
T Consensus 134 ~l~riaVfDi~inNaDRk~GhiL~~~-dg~l~~IDHGl~f~~~~kl 178 (253)
T TIGR03843 134 QLRRMAVFDALVNNADRKGGHVLPGP-DGRVWGVDHGVCFHVEPKL 178 (253)
T ss_pred HHhhhhhheeeeecCCCCCCcEeEcC-CCcEEEecCceecCCCCcc
Confidence 45567888899999999999999996 8999999999999875444
No 74
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=53.55 E-value=31 Score=34.73 Aligned_cols=62 Identities=24% Similarity=0.274 Sum_probs=41.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhccCCCchhhHHHHHhHHHHH--hhcCChHHHHHhhhchhc
Q 000492 727 EEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAE--SRSSNSRIILENYLKPAV 789 (1463)
Q Consensus 727 E~Ak~lW~~Ge~~~Ai~~Lq~l~~~~~~~~~~a~l~~l~g~wlae--t~~e~~~~I~~~Y~~~a~ 789 (1463)
|.|+-+|++|++..|+.++++++...........++.+-|.-..+ ...++|+ +-..|+..++
T Consensus 1 e~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d-~k~~yLl~sv 64 (111)
T PF04781_consen 1 EKAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPD-VKFRYLLGSV 64 (111)
T ss_pred ChHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCch-HHHHHHHHhH
Confidence 468999999999999999999987765554444566666655432 2244443 3445555454
No 75
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=53.28 E-value=18 Score=41.99 Aligned_cols=109 Identities=18% Similarity=0.187 Sum_probs=48.3
Q ss_pred CHHHHHHHHHhhCchhhhhhhhHhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCCchhhhhhhcc--------
Q 000492 334 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-------- 405 (1463)
Q Consensus 334 d~~~lA~aA~~C~AyatALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~-------- 405 (1463)
++..++.. ..=+-|.+|+-+.|..++.. ..+.....++.+|.+.++.+.+..+...
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~---------------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERD---------------GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAP 143 (280)
T ss_dssp ------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---
T ss_pred cccccccc-cccccccccccccccccccc---------------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC
Confidence 45555555 57788888998888644321 1234455677788888888877777542
Q ss_pred cc---hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhh
Q 000492 406 HK---LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQV 482 (1463)
Q Consensus 406 ~~---l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~L 482 (1463)
.+ +......|++.|++++|+.+|+..+... |+ +.+...+++..|...
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-----------------P~-------------~~~~~~~l~~~li~~ 193 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELD-----------------PD-------------DPDARNALAWLLIDM 193 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------------------TT--------------HHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------CC-------------CHHHHHHHHHHHHHC
Confidence 11 2345578999999999999999999975 43 122356777778888
Q ss_pred chhhHH
Q 000492 483 GCMHVL 488 (1463)
Q Consensus 483 G~~~~L 488 (1463)
|....+
T Consensus 194 ~~~~~~ 199 (280)
T PF13429_consen 194 GDYDEA 199 (280)
T ss_dssp CHHHHH
T ss_pred CChHHH
Confidence 876543
No 76
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=52.94 E-value=22 Score=31.48 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=39.7
Q ss_pred hhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhchhhHHHHhhhccc
Q 000492 417 HEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLT 496 (1463)
Q Consensus 417 ~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~~~~gl~ 496 (1463)
..|+|++|+..|+..++.. |+ +.+...++.+|+-..|.++.....++.+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-----------------p~-------------~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-----------------PD-------------NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-----------------TT-------------SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHC-----------------CC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5799999999999999965 33 22356799999999999988876666554
Q ss_pred cc
Q 000492 497 SW 498 (1463)
Q Consensus 497 ~~ 498 (1463)
..
T Consensus 53 ~~ 54 (68)
T PF14559_consen 53 KQ 54 (68)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 77
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=52.60 E-value=18 Score=28.36 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=20.0
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhh
Q 000492 410 SQIVTLEHEGNWSKALEYYELQVRS 434 (1463)
Q Consensus 410 ~~i~~yE~eg~W~kAL~~Yd~~l~~ 434 (1463)
.....|.+.|+|++|..+|+..+..
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4457899999999999999996653
No 78
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=52.15 E-value=11 Score=39.75 Aligned_cols=29 Identities=24% Similarity=0.212 Sum_probs=24.8
Q ss_pred hheeccCCCCCCeEEEecCCCcEEEeecchh
Q 000492 1281 GYIVGLGDRHAMNILIDQATAEVVHIDLGVA 1311 (1463)
Q Consensus 1281 gyILGLGDRH~~NILld~~tG~vvhIDfg~~ 1311 (1463)
.+.+-=||=||+|||++ .|++.-|||+.+
T Consensus 106 ~~~~~HgD~~~~Nil~~--~~~~~liDf~~a 134 (170)
T cd05151 106 DLVPCHNDLLPGNFLLD--DGRLWLIDWEYA 134 (170)
T ss_pred CceeecCCCCcCcEEEE--CCeEEEEecccc
Confidence 55566699999999999 688999999975
No 79
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=50.80 E-value=1.8e+02 Score=32.27 Aligned_cols=69 Identities=10% Similarity=-0.160 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHH-HcCC--hHHHHHHHHHHHhhcc
Q 000492 677 DFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLR-AQGQ--HEMAINLAKYISENYE 753 (1463)
Q Consensus 677 ~~~~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW-~~Ge--~~~Ai~~Lq~l~~~~~ 753 (1463)
....+.|...+.++...|++..|..++.++..+.. .+.......|.+++ ..|+ ...|+.+++..++..+
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P--------~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP 141 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG--------ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA 141 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 34677899999999999999999999988765532 12233466899875 5576 4899999988776544
No 80
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=49.36 E-value=1.2e+02 Score=36.26 Aligned_cols=98 Identities=20% Similarity=0.275 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHhhccchhhhhhhHHHHHHHH------Hh----------hc---------------cchHHHHHHHHHH
Q 000492 639 SWLNTEWSSILKRTQLHMNLLEPFMAFRRVLL------QI----------LS---------------CKDFTMQHLLESA 687 (1463)
Q Consensus 639 ~~l~~~W~~rl~~~q~~~~~~EpiL~~R~~vl------~i----------l~---------------~~~~~~~~wl~~A 687 (1463)
+.+.+.|++.+..-..++.+|..+|.+++.=+ .+ |. ..+..+...++.+
T Consensus 82 ~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~ 161 (321)
T PF08424_consen 82 EKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLC 161 (321)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Confidence 44667788877766667888888887775411 11 10 1234566778889
Q ss_pred HHHHhcCChhHHHHHHHHHHhhcC-CCCCCCchhhhhHhHHHHHHHHHcCC
Q 000492 688 STLRKGFRLSQAAAALHELKFLYT-GPGDQCSTVYWLGRLEEAKLLRAQGQ 737 (1463)
Q Consensus 688 ~laRkag~~~~A~~aL~~l~~l~~-~~~~q~~~~~~~a~lE~Ak~lW~~Ge 737 (1463)
..+|.+|+...|.+.+-.+..+.. .+........ ..+++.-.-+|+.|-
T Consensus 162 ~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~-~~~~~~fe~FWeS~v 211 (321)
T PF08424_consen 162 RFLRQAGYTERAVALWQALLEFNFFRPESLSSSSF-SERLESFEEFWESEV 211 (321)
T ss_pred HHHHHCCchHHHHHHHHHHHHHHcCCccccccccH-HHHHHHHHHHhCcCC
Confidence 999999999999876544433322 1111111100 145777888998864
No 81
>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]
Probab=48.65 E-value=98 Score=34.41 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=25.5
Q ss_pred CCCCCCeEEEecCCCcE--EEeecchhhcc
Q 000492 1287 GDRHAMNILIDQATAEV--VHIDLGVAFEQ 1314 (1463)
Q Consensus 1287 GDRH~~NILld~~tG~v--vhIDfg~~F~~ 1314 (1463)
||-..+||++....+++ +-||||..+-+
T Consensus 137 GDLTTSNill~~~~~~~~~~lIdfgls~~s 166 (229)
T KOG3087|consen 137 GDLTTSNILLRSDGNQITPILIDFGLSSVS 166 (229)
T ss_pred ccccccceEEecCCCcCceEEEeecchhcc
Confidence 89999999999999998 99999987764
No 82
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=48.18 E-value=23 Score=26.95 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=24.2
Q ss_pred HHHHHHHhhhcCcchhhchHHHHHHHHhc
Q 000492 94 VLKILKKYLMDDSVQIVDMTSQTLRGILS 122 (1463)
Q Consensus 94 il~~l~~~l~~~~~~~~~~a~~~L~~ils 122 (1463)
||..+.+++.|++.+|+..|..||..|..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46677888999999999999999998753
No 83
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=47.83 E-value=1.8e+02 Score=28.12 Aligned_cols=83 Identities=20% Similarity=0.146 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhhH
Q 000492 682 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDV 761 (1463)
Q Consensus 682 ~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~~~~~~~~a~l 761 (1463)
.+.+.+....+.|++..|...+.++.... +.. +....+.+..+.++...|+...|+..++.++...+.......+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKS---TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCc---cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH
Confidence 45666788888999999998887764321 111 1111245778999999999999999999888766544434455
Q ss_pred HHHHhHHH
Q 000492 762 YRLVGKWL 769 (1463)
Q Consensus 762 ~~l~g~wl 769 (1463)
+..+|.-+
T Consensus 79 ~~~~~~~~ 86 (119)
T TIGR02795 79 LLKLGMSL 86 (119)
T ss_pred HHHHHHHH
Confidence 55555443
No 84
>TIGR03724 arch_bud32 Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.
Probab=47.15 E-value=14 Score=40.21 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.8
Q ss_pred cCCCCCCeEEEecCCCcEEEeecchh
Q 000492 1286 LGDRHAMNILIDQATAEVVHIDLGVA 1311 (1463)
Q Consensus 1286 LGDRH~~NILld~~tG~vvhIDfg~~ 1311 (1463)
=||-||.|||++ .|++.-||||.+
T Consensus 113 H~Dl~~~Nil~~--~~~~~liDfg~a 136 (199)
T TIGR03724 113 HGDLTTSNIIVR--DDKLYLIDFGLG 136 (199)
T ss_pred cCCCCcceEEEE--CCcEEEEECCCC
Confidence 499999999999 799999999964
No 85
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=46.71 E-value=89 Score=27.62 Aligned_cols=63 Identities=10% Similarity=-0.130 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcC-ChHHHHHHHHHHHh
Q 000492 680 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQG-QHEMAINLAKYISE 750 (1463)
Q Consensus 680 ~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~G-e~~~Ai~~Lq~l~~ 750 (1463)
...|...|..+...|++..|.....++-.+. |.+..+.+-.+...+.+| +...|+..++..++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4568888999999999999999888765542 223344567899999999 68999998765544
No 86
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=44.35 E-value=14 Score=47.02 Aligned_cols=49 Identities=27% Similarity=0.371 Sum_probs=33.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEE--cCCCCceeEEcCCCCchHHH
Q 000492 1141 DDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVP--FTPSAGILEWVDGTVPLGDY 1200 (1463)
Q Consensus 1141 dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViP--Ls~~~GLIE~v~~t~tl~~i 1200 (1463)
=|+|+++.-+.-|+ ..++.+ -.++.|+|.+ .++++=.+||+++ +++.++
T Consensus 206 lDy~~EA~n~~~~~---~nf~~~-------~~v~VP~V~we~t~~~VLtmE~i~G-i~i~d~ 256 (517)
T COG0661 206 LDYRREAANAERFR---ENFKDD-------PDVYVPKVYWEYTTRRVLTMEWIDG-IKISDI 256 (517)
T ss_pred hCHHHHHHHHHHHH---HHcCCC-------CCeEeceeehhccCCcEEEEEeeCC-EecccH
Confidence 36777777766553 333333 3688999996 5888889999998 445443
No 87
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=44.11 E-value=17 Score=39.81 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=25.5
Q ss_pred ccCCCCCCeEEEecCCCcEEEeecchhhccc
Q 000492 1285 GLGDRHAMNILIDQATAEVVHIDLGVAFEQG 1315 (1463)
Q Consensus 1285 GLGDRH~~NILld~~tG~vvhIDfg~~F~~g 1315 (1463)
-=||=+|+||+++. +|++.=||||.++..+
T Consensus 147 ~H~Dl~p~Nill~~-~~~~~liDfg~~~~~~ 176 (198)
T cd05144 147 IHGDLSEFNILVDD-DEKIYIIDWPQMVSTD 176 (198)
T ss_pred CcCCCCcccEEEcC-CCcEEEEECCccccCC
Confidence 34799999999996 8999999999886543
No 88
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=43.14 E-value=15 Score=41.89 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.2
Q ss_pred CCCCCCeEEEecCCCcEEEeecchh
Q 000492 1287 GDRHAMNILIDQATAEVVHIDLGVA 1311 (1463)
Q Consensus 1287 GDRH~~NILld~~tG~vvhIDfg~~ 1311 (1463)
||=||+||+++. .| ++=||||..
T Consensus 159 ~Dikp~Nili~~-~g-i~liDfg~~ 181 (232)
T PRK10359 159 GDPHKGNFIVSK-NG-LRIIDLSGK 181 (232)
T ss_pred CCCChHHEEEeC-CC-EEEEECCCc
Confidence 799999999986 67 999999843
No 89
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=42.61 E-value=14 Score=47.37 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=22.4
Q ss_pred ccCCCCCCeEEEecCCC----cEEEeecchh
Q 000492 1285 GLGDRHAMNILIDQATA----EVVHIDLGVA 1311 (1463)
Q Consensus 1285 GLGDRH~~NILld~~tG----~vvhIDfg~~ 1311 (1463)
-=+|=||+||+++. .| +++-+|||..
T Consensus 282 fHaDpHPGNIlv~~-~g~~~~~i~llDFGiv 311 (537)
T PRK04750 282 FHADMHPGNIFVSY-DPPENPRYIALDFGIV 311 (537)
T ss_pred eeCCCChHHeEEec-CCCCCCeEEEEecceE
Confidence 34899999999996 55 9999999976
No 90
>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane
Probab=41.84 E-value=93 Score=34.59 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhCcccccCCceeecceEEEcCCC--------CceeEEcCCCCchHHHhhh
Q 000492 1147 AVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPS--------AGILEWVDGTVPLGDYLIG 1203 (1463)
Q Consensus 1147 ~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs~~--------~GLIE~v~~t~tl~~il~~ 1203 (1463)
.+..+=+..++.+.+ ..|.|+.+|..... .=+.|.++++.+|.+++..
T Consensus 56 ~ra~~E~~~~~~L~~---------~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~ 111 (206)
T PF06293_consen 56 SRAKREWRNLQRLRE---------AGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQ 111 (206)
T ss_pred hHHHHHHHHHHHHHH---------cCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHh
Confidence 455555666666654 46888888887665 1267899999999988753
No 91
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=41.47 E-value=18 Score=38.92 Aligned_cols=26 Identities=42% Similarity=0.535 Sum_probs=22.9
Q ss_pred cCCCCCCeEEEecCCCcEEEeecchhhc
Q 000492 1286 LGDRHAMNILIDQATAEVVHIDLGVAFE 1313 (1463)
Q Consensus 1286 LGDRH~~NILld~~tG~vvhIDfg~~F~ 1313 (1463)
=||-||+||+++ +|.+.=||||.+-.
T Consensus 138 H~Dl~p~Nili~--~~~~~liDfg~a~~ 163 (187)
T cd05119 138 HGDLSEYNILVD--DGKVYIIDVPQAVE 163 (187)
T ss_pred cCCCChhhEEEE--CCcEEEEECccccc
Confidence 479999999999 89999999997643
No 92
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=41.45 E-value=2.4e+02 Score=30.23 Aligned_cols=85 Identities=14% Similarity=0.112 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhCchhhhhhhhHhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCCchhhhhhhcc-----c---
Q 000492 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 406 (1463)
Q Consensus 335 ~~~lA~aA~~C~AyatALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~-----~--- 406 (1463)
+..+|.....-+-|..|+-+.+...... | ......-.+-.+|...+++|.+...... +
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~--------p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD--------P------DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--------c------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 4567888888899999999888654321 1 1123444566777777777776655431 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHh
Q 000492 407 -KLSSQIVTLEHEGNWSKALEYYELQVR 433 (1463)
Q Consensus 407 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~ 433 (1463)
.......-|...|++++|+.+|+..++
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 112334556677888888888877765
No 93
>PRK14879 serine/threonine protein kinase; Provisional
Probab=40.51 E-value=21 Score=39.30 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=21.7
Q ss_pred cCCCCCCeEEEecCCCcEEEeecchh
Q 000492 1286 LGDRHAMNILIDQATAEVVHIDLGVA 1311 (1463)
Q Consensus 1286 LGDRH~~NILld~~tG~vvhIDfg~~ 1311 (1463)
=||-+|.|||++ .|.+.-||||.+
T Consensus 118 H~Dl~p~Nil~~--~~~~~liDf~~a 141 (211)
T PRK14879 118 HGDLTTSNMILS--GGKIYLIDFGLA 141 (211)
T ss_pred cCCCCcccEEEE--CCCEEEEECCcc
Confidence 389999999999 799999999965
No 94
>smart00090 RIO RIO-like kinase.
Probab=39.49 E-value=21 Score=40.74 Aligned_cols=28 Identities=36% Similarity=0.490 Sum_probs=24.1
Q ss_pred cCCCCCCeEEEecCCCcEEEeecchhhccc
Q 000492 1286 LGDRHAMNILIDQATAEVVHIDLGVAFEQG 1315 (1463)
Q Consensus 1286 LGDRH~~NILld~~tG~vvhIDfg~~F~~g 1315 (1463)
=||=+|+||+++ +|++.=||||.+...+
T Consensus 172 H~Dikp~NIli~--~~~i~LiDFg~a~~~~ 199 (237)
T smart00090 172 HGDLSEYNILVH--DGKVVIIDVSQSVELD 199 (237)
T ss_pred eCCCChhhEEEE--CCCEEEEEChhhhccC
Confidence 379999999999 8999999999876543
No 95
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=39.21 E-value=2.4e+02 Score=38.40 Aligned_cols=108 Identities=27% Similarity=0.342 Sum_probs=74.9
Q ss_pred CCCceEeeeeecCCccchhhHHHHHHHHHHHHHHHhCcccccCCceeecceEEEcCCCCceeEEcCCCCchHHHhhhhcc
Q 000492 1127 SDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTR 1206 (1463)
Q Consensus 1127 sdG~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~tl~~il~~~~~ 1206 (1463)
+||+ +.+.|| -+++-|+...+++..+|.-... ..+++++|+.-+ +-|-.|||+.. +..
T Consensus 111 ~~g~--kivYKP--r~l~~d~~f~~~l~~ln~~~~~--------~~~~~~~~l~~~-~ygw~EfI~~~-~c~-------- 168 (825)
T cd04792 111 SSGL--KLVYKP--RSLSVDALFQELLEWLNSFLGA--------LPLRTPKVLDRG-DYGWEEFIEHQ-PCQ-------- 168 (825)
T ss_pred CCCC--EEEECC--CCchHHHHHHHHHHHHHhcCCc--------cccccceeeecC-CcceEEeecCC-CCC--------
Confidence 3565 457886 6999999999999999875432 234788888765 47999999751 110
Q ss_pred CCCCCCCCCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheecc
Q 000492 1207 NGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGL 1286 (1463)
Q Consensus 1207 ~~~~~~~~~~~~~~~~~~r~~~~~~~~k~~~f~~i~~~~~pvl~~~~~~~f~~~~~w~~~R~~ft~S~A~~S~vgyILGL 1286 (1463)
+ +.+ -.+|=+-++..-.+.|+||.
T Consensus 169 -----------------------~---~~e------------------------------~~~fY~r~G~llal~y~L~~ 192 (825)
T cd04792 169 -----------------------S---KEE------------------------------VERYYYRLGGLLALLYLLNA 192 (825)
T ss_pred -----------------------C---HHH------------------------------HHHHHHHHHHHHHHHHHcCC
Confidence 0 000 01344557778889999999
Q ss_pred CCCCCCeEEEecCCCcEEEeecchhhcc
Q 000492 1287 GDRHAMNILIDQATAEVVHIDLGVAFEQ 1314 (1463)
Q Consensus 1287 GDRH~~NILld~~tG~vvhIDfg~~F~~ 1314 (1463)
.|=|-+||.-+ -+..|=||+--+|..
T Consensus 193 tD~H~ENiIA~--g~~PvlIDlETlf~~ 218 (825)
T cd04792 193 TDLHFENIIAS--GEYPVLIDLETLFHP 218 (825)
T ss_pred cccchhhheee--CCCceEEeeHHhcCC
Confidence 99999999554 366777887666653
No 96
>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily.; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....
Probab=39.17 E-value=20 Score=39.57 Aligned_cols=33 Identities=30% Similarity=0.340 Sum_probs=23.9
Q ss_pred hhhheeccCCCCCCeEEEecCCCcEEEeecchh
Q 000492 1279 MVGYIVGLGDRHAMNILIDQATAEVVHIDLGVA 1311 (1463)
Q Consensus 1279 ~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~ 1311 (1463)
-....+.=||=||+|||++...|+|--|||+.+
T Consensus 163 ~~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a 195 (239)
T PF01636_consen 163 PLPPVLIHGDLHPGNILVDPSDGRIGIIDFEDA 195 (239)
T ss_dssp CSCEEEE-SS-SGGGEEEESSTTEEEE--GTT-
T ss_pred CCCcEEEEeccccccceeeeccceeEEEecccc
Confidence 467788889999999999976788879999865
No 97
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=38.93 E-value=69 Score=28.34 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=37.4
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhc-hhhH
Q 000492 409 SSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVG-CMHV 487 (1463)
Q Consensus 409 ~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG-~~~~ 487 (1463)
......|.++|+|++|+.+|+..++.+ |+ +...+.++-.|+..+| .+..
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~~-----------------p~-------------~~~~~~~~g~~~~~~~~~~~~ 56 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIELD-----------------PN-------------NAEAYYNLGLAYMKLGKDYEE 56 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHS-----------------TT-------------HHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------CC-------------CHHHHHHHHHHHHHhCccHHH
Confidence 345567889999999999999999965 33 2235677788888888 5544
Q ss_pred H
Q 000492 488 L 488 (1463)
Q Consensus 488 L 488 (1463)
.
T Consensus 57 A 57 (69)
T PF13414_consen 57 A 57 (69)
T ss_dssp H
T ss_pred H
Confidence 3
No 98
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=38.49 E-value=21 Score=44.80 Aligned_cols=24 Identities=25% Similarity=0.592 Sum_probs=22.0
Q ss_pred CCCCCCeEEEecCCCcEEEeecchh
Q 000492 1287 GDRHAMNILIDQATAEVVHIDLGVA 1311 (1463)
Q Consensus 1287 GDRH~~NILld~~tG~vvhIDfg~~ 1311 (1463)
||=||+||+++. +|+++=+|||.+
T Consensus 281 ~D~hPgNilv~~-~g~i~liDfG~~ 304 (437)
T TIGR01982 281 ADLHPGNIFVLK-DGKIIALDFGIV 304 (437)
T ss_pred CCCCcccEEECC-CCcEEEEeCCCe
Confidence 799999999975 899999999975
No 99
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=38.24 E-value=1e+02 Score=28.00 Aligned_cols=70 Identities=11% Similarity=-0.132 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHH
Q 000492 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYIS 749 (1463)
Q Consensus 679 ~~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~ 749 (1463)
+...+...|...+..|+++.|...+.+...+... -+...+....+....+.++-..|+.+.|+..++..+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQ-LGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556677899999999999999887776554211 111122223344577888889999999999886543
No 100
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=37.09 E-value=2e+02 Score=28.89 Aligned_cols=67 Identities=18% Similarity=-0.029 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 000492 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 753 (1463)
Q Consensus 679 ~~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~~~ 753 (1463)
....|...+....+.|++..|...+.++..+. |.+....+..|.+++..|+...|+..++..++..+
T Consensus 50 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 50 NSRYWLGLAACCQMLKEYEEAIDAYALAAALD--------PDDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 45667778888899999999988877654332 11223346689999999999999999987776544
No 101
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=36.47 E-value=99 Score=25.23 Aligned_cols=31 Identities=23% Similarity=0.132 Sum_probs=26.5
Q ss_pred hHHHHHHHHHcCChHHHHHHHHHHHhhccCC
Q 000492 725 RLEEAKLLRAQGQHEMAINLAKYISENYESN 755 (1463)
Q Consensus 725 ~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~~~~~ 755 (1463)
.+..|+.++..|+.+.|+.+++.+++..+.+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3568999999999999999999998876543
No 102
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=35.57 E-value=21 Score=41.85 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.0
Q ss_pred CCCCCCeEEEecCCCcEEEeecchhhc
Q 000492 1287 GDRHAMNILIDQATAEVVHIDLGVAFE 1313 (1463)
Q Consensus 1287 GDRH~~NILld~~tG~vvhIDfg~~F~ 1313 (1463)
-|--|+|||||+ +|.+=-+|||++=.
T Consensus 168 RDLKPENiLlD~-~G~iKitDFGFAK~ 193 (355)
T KOG0616|consen 168 RDLKPENLLLDQ-NGHIKITDFGFAKR 193 (355)
T ss_pred ccCChHHeeecc-CCcEEEEeccceEE
Confidence 588999999996 99999999998743
No 103
>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]
Probab=35.29 E-value=25 Score=41.90 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.3
Q ss_pred CCCCCCeEEEecCCCcEEEeecchhhccc
Q 000492 1287 GDRHAMNILIDQATAEVVHIDLGVAFEQG 1315 (1463)
Q Consensus 1287 GDRH~~NILld~~tG~vvhIDfg~~F~~g 1315 (1463)
-|-+|+||||+. +|.+=-+|||.+-..+
T Consensus 144 RDLKPQNlLi~~-~G~lKlaDFGlAra~~ 171 (323)
T KOG0594|consen 144 RDLKPQNLLISS-SGVLKLADFGLARAFS 171 (323)
T ss_pred ccCCcceEEECC-CCcEeeeccchHHHhc
Confidence 688999999997 9999999999875433
No 104
>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.
Probab=34.76 E-value=17 Score=40.21 Aligned_cols=44 Identities=36% Similarity=0.511 Sum_probs=27.9
Q ss_pred CCCCCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCcccccchhhccc
Q 000492 1287 GDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMG 1337 (1463)
Q Consensus 1287 GDRH~~NILld~~tG~vvhIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG 1337 (1463)
||-++.|||++. |+++-||||-+++.. .| ..-.-|.|++.+...
T Consensus 131 GDLs~~NIlv~~--~~~~iIDf~qav~~~----~p-~a~~~l~RDi~ni~~ 174 (188)
T PF01163_consen 131 GDLSEYNILVDD--GKVYIIDFGQAVDSS----HP-NAEELLRRDIENIIR 174 (188)
T ss_dssp SS-STTSEEEET--TCEEE--GTTEEETT----ST-THHHHHHHHHHHHHH
T ss_pred cCCChhhEEeec--ceEEEEecCcceecC----Cc-cHHHHHHHHHHHHHH
Confidence 899999999996 599999999777644 22 223345565544433
No 105
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=34.73 E-value=77 Score=27.74 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=37.6
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhchhhHHHH
Q 000492 411 QIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDM 490 (1463)
Q Consensus 411 ~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~ 490 (1463)
+...|-..|++++|...|+..++.. |. +.+...++-+|+...|.+.....
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-----------------P~-------------~~~a~~~lg~~~~~~g~~~~A~~ 52 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-----------------PD-------------NPEAWYLLGRILYQQGRYDEALA 52 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-----------------TT-------------HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-----------------CC-------------CHHHHHHHHHHHHHcCCHHHHHH
Confidence 3467888999999999999999954 33 23456788889999998765533
No 106
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=34.56 E-value=2.7e+02 Score=24.24 Aligned_cols=62 Identities=16% Similarity=-0.112 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 000492 683 LLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 752 (1463)
Q Consensus 683 wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~~ 752 (1463)
|...|......|++..|...+.++.... +....+.+..+.+++..|+...|+..++..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 64 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5566777888999999988887654331 1111334678999999999999999988776543
No 107
>PRK09550 mtnK methylthioribose kinase; Reviewed
Probab=33.14 E-value=6e+02 Score=31.63 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=24.5
Q ss_pred hheeccCCCCCCeEEEecCCCcEEEeecchhh
Q 000492 1281 GYIVGLGDRHAMNILIDQATAEVVHIDLGVAF 1312 (1463)
Q Consensus 1281 gyILGLGDRH~~NILld~~tG~vvhIDfg~~F 1312 (1463)
+..|-=||=|+.|||+.. +.+.-|||-++|
T Consensus 222 ~~~l~HgDl~~gni~~~~--~~~~viD~E~a~ 251 (401)
T PRK09550 222 AEALLHGDLHTGSIFVTE--EETKVIDPEFAF 251 (401)
T ss_pred CCceeeccCCcccEEeeC--CCcEEEeccccc
Confidence 344888999999999975 469999997665
No 108
>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]
Probab=33.02 E-value=29 Score=44.35 Aligned_cols=40 Identities=23% Similarity=0.100 Sum_probs=30.2
Q ss_pred hccchhhheeccCCCCCCeEEEecCCCcEEEeecchhhcc
Q 000492 1275 AASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQ 1314 (1463)
Q Consensus 1275 A~~S~vgyILGLGDRH~~NILld~~tG~vvhIDfg~~F~~ 1314 (1463)
|+-.+=+.=.=.+|-||+|||++..-|.+--+|||..-+.
T Consensus 427 Av~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~ 466 (612)
T KOG0603|consen 427 AVDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSEL 466 (612)
T ss_pred HHHHHHhcCeeecCCChhheeecCCCCcEEEEEechhhhC
Confidence 3334444445579999999999767899999999987653
No 109
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.22 E-value=36 Score=37.67 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=25.2
Q ss_pred CCceeecceEEEcCCCCce--eEEcCCCCchHHHhh
Q 000492 1169 RRLGVRTYKVVPFTPSAGI--LEWVDGTVPLGDYLI 1202 (1463)
Q Consensus 1169 r~L~i~tY~ViPLs~~~GL--IE~v~~t~tl~~il~ 1202 (1463)
+.+.+.+|.|.-+.|..|+ +|+|++. .|.+++.
T Consensus 57 ~~~GV~~P~v~dvD~~~~~I~me~I~G~-~lkd~l~ 91 (204)
T COG3642 57 REAGVPVPIVYDVDPDNGLIVMEYIEGE-LLKDALE 91 (204)
T ss_pred HHcCCCCCeEEEEcCCCCEEEEEEeCCh-hHHHHHH
Confidence 3568999999999999975 5899874 4665553
No 110
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=31.54 E-value=3.5e+02 Score=29.93 Aligned_cols=82 Identities=18% Similarity=0.071 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhh
Q 000492 681 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPD 760 (1463)
Q Consensus 681 ~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~~~~~~~~a~ 760 (1463)
+.+-+.|..+=..|++..|...+..+..- .+.+. ....+.+..|......|+...|+...+.++++++.++....
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~---~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDR--YPNSP---YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTST---THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence 34555677788899999999998877532 11111 12235688899999999999999999999999988888888
Q ss_pred HHHHHhH
Q 000492 761 VYRLVGK 767 (1463)
Q Consensus 761 l~~l~g~ 767 (1463)
++.++|.
T Consensus 81 A~Y~~g~ 87 (203)
T PF13525_consen 81 ALYMLGL 87 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777664
No 111
>PRK12274 serine/threonine protein kinase; Provisional
Probab=31.49 E-value=36 Score=38.49 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.7
Q ss_pred CCC-CCCeEEEecCCCcEEEeecchhh
Q 000492 1287 GDR-HAMNILIDQATAEVVHIDLGVAF 1312 (1463)
Q Consensus 1287 GDR-H~~NILld~~tG~vvhIDfg~~F 1312 (1463)
+|- .|+|||++. .|++.=||||.+-
T Consensus 115 rDL~kp~NILv~~-~g~i~LIDFG~A~ 140 (218)
T PRK12274 115 NDLAKEANWLVQE-DGSPAVIDFQLAV 140 (218)
T ss_pred CCCCCcceEEEcC-CCCEEEEECCCce
Confidence 888 589999985 8999999999764
No 112
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=31.27 E-value=34 Score=39.19 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.0
Q ss_pred cCCCCCCeEEEecCCCcEEEeecchh
Q 000492 1286 LGDRHAMNILIDQATAEVVHIDLGVA 1311 (1463)
Q Consensus 1286 LGDRH~~NILld~~tG~vvhIDfg~~ 1311 (1463)
=+|-+|+|||++. +|++.=||||.+
T Consensus 165 HrDlkp~NILv~~-~~~v~LIDfg~~ 189 (239)
T PRK01723 165 HADLNAHNILLDP-DGKFWLIDFDRG 189 (239)
T ss_pred CCCCCchhEEEcC-CCCEEEEECCCc
Confidence 4799999999996 789999999954
No 113
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=31.11 E-value=8e+02 Score=33.25 Aligned_cols=32 Identities=25% Similarity=0.115 Sum_probs=27.2
Q ss_pred hhHhHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 000492 722 WLGRLEEAKLLRAQGQHEMAINLAKYISENYE 753 (1463)
Q Consensus 722 ~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~~~ 753 (1463)
....+-.|+.+.+.|+.++|..++.++++..+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp 170 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDP 170 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence 34457789999999999999999999998654
No 114
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=30.82 E-value=71 Score=24.14 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=20.9
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhhh
Q 000492 411 QIVTLEHEGNWSKALEYYELQVRSD 435 (1463)
Q Consensus 411 ~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1463)
...-|.+.|++++|+.+|+..++.+
T Consensus 7 ~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 7 LGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHC
Confidence 4567899999999999999999965
No 115
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=30.72 E-value=1.7e+02 Score=33.94 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhCchhhhhhhhHhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCCchhhhhhhc--------cc
Q 000492 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ--------SH 406 (1463)
Q Consensus 335 ~~~lA~aA~~C~AyatALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~--------~~ 406 (1463)
+...|....+.|-+.+|+-+.+..+... | ..++....|.-++-..++.+-+--++. .+
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~--------P------~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~ 214 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALELD--------P------DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP 214 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH---------T------T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--------C------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH
Confidence 4578888999999999999999876532 1 224556667777777777775333331 12
Q ss_pred c-hhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000492 407 K-LSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1463)
Q Consensus 407 ~-l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1463)
. ......-|...|+.++|+.+|+..+...
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcccccccccccccccccccc
Confidence 2 3456688999999999999999998864
No 116
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=30.67 E-value=1.3e+03 Score=30.01 Aligned_cols=77 Identities=16% Similarity=-0.022 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchh
Q 000492 680 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAP 759 (1463)
Q Consensus 680 ~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~~~~~~~~a 759 (1463)
...|...+.+....|++..|...+.++..+. |....+.+..+.+++..|+...|+..++..+...+ ..+
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p---~~~ 399 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIELD--------PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS---EDP 399 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCH
Confidence 3445666677777888888888877654331 11222346678888889999999988876665432 234
Q ss_pred hHHHHHhH
Q 000492 760 DVYRLVGK 767 (1463)
Q Consensus 760 ~l~~l~g~ 767 (1463)
+++..+|.
T Consensus 400 ~~~~~lg~ 407 (615)
T TIGR00990 400 DIYYHRAQ 407 (615)
T ss_pred HHHHHHHH
Confidence 44444444
No 117
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=29.56 E-value=56 Score=24.46 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=20.8
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhhh
Q 000492 411 QIVTLEHEGNWSKALEYYELQVRSD 435 (1463)
Q Consensus 411 ~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1463)
....|.+.|+|++|..+|+..++..
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 3467899999999999999999865
No 118
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=29.55 E-value=1.4e+02 Score=37.58 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=39.8
Q ss_pred hhHhHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhhHHHHHhHHHHH-hhcCChHHHHHhh
Q 000492 722 WLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAE-SRSSNSRIILENY 784 (1463)
Q Consensus 722 ~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~~~~~~~~a~l~~l~g~wlae-t~~e~~~~I~~~Y 784 (1463)
.+++...|-.+|..|+.++||.+.+++++.++.. ..-.+...+-+|+-| .+..+...++.+|
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~-~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL-DNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc-chhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4567889999999999999999999999876432 122233344444433 2233444445555
No 119
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=28.64 E-value=5e+02 Score=27.75 Aligned_cols=86 Identities=13% Similarity=0.057 Sum_probs=57.5
Q ss_pred HHHHHHHHhhCchhhhhhhhHhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCCchhhhhhhccc---------
Q 000492 336 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH--------- 406 (1463)
Q Consensus 336 ~~lA~aA~~C~AyatALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~~--------- 406 (1463)
..+|.....-+-|..|+-+.+...... + ..+...-.+-.+|...+++|.+.-.....
T Consensus 69 ~~la~~~~~~~~~~~A~~~~~~al~~~--------~------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 134 (234)
T TIGR02521 69 LALALYYQQLGELEKAEDSFRRALTLN--------P------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQP 134 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--------C------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc
Confidence 457888888899999999888755321 1 11233445666777777777765553310
Q ss_pred --chhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000492 407 --KLSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1463)
Q Consensus 407 --~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1463)
.......-|...|++++|..+|+..++..
T Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 135 ARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 12234467889999999999999988854
No 120
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=28.37 E-value=47 Score=33.35 Aligned_cols=25 Identities=40% Similarity=0.372 Sum_probs=22.5
Q ss_pred CCCCCCeEEEecCCCcEEEeecchhh
Q 000492 1287 GDRHAMNILIDQATAEVVHIDLGVAF 1312 (1463)
Q Consensus 1287 GDRH~~NILld~~tG~vvhIDfg~~F 1312 (1463)
||=+|+|||++. +|.+.=+|||.+.
T Consensus 113 ~Dl~~~Nil~~~-~~~~~l~Df~~~~ 137 (155)
T cd05120 113 GDLHPGNILVDD-GKILGIIDWEYAG 137 (155)
T ss_pred cCCCcceEEEEC-CcEEEEEeccccc
Confidence 899999999997 8999999999653
No 121
>PRK05685 fliS flagellar protein FliS; Validated
Probab=27.76 E-value=3.3e+02 Score=28.30 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhh-------hHHHHHHHHHH
Q 000492 548 LHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEE-------STEYIYSAIVK 595 (1463)
Q Consensus 548 L~~~L~al~~~d~~~~~~~i~~aR~~l~~~Lsa~s~E-------Sy~~~Y~~lvr 595 (1463)
+..+..|+.++|++.+...|.+|+.-+.+=.+++-.| ....+|.++.+
T Consensus 39 l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~LY~y~~~ 93 (132)
T PRK05685 39 LAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSALYDYMIR 93 (132)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHH
Confidence 3456678899999999999999987654333333332 23445666554
No 122
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=27.67 E-value=37 Score=39.28 Aligned_cols=59 Identities=27% Similarity=0.330 Sum_probs=40.4
Q ss_pred CCCCCCeEEEecCCCcEEEeecchhhc------ccc-CCCCCCCCCcccccchh--------hcccccccc---chhH
Q 000492 1287 GDRHAMNILIDQATAEVVHIDLGVAFE------QGL-MLKTPERVPFRLTRDII--------DGMGVTGVE---GVFR 1346 (1463)
Q Consensus 1287 GDRH~~NILld~~tG~vvhIDfg~~F~------~g~-~l~~pE~VPFRLTrniv--------~~mG~~g~e---G~F~ 1346 (1463)
-|--|+|||+|+ +|.|=--|||.|=. +.. .-=.|=..|=|++|+=- =-+|++-+| |.|.
T Consensus 192 RDvKPSNILldr-~G~vKLCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fP 268 (361)
T KOG1006|consen 192 RDVKPSNILLDR-HGDVKLCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFP 268 (361)
T ss_pred ccCChhheEEec-CCCEeeecccchHhHHHHHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCC
Confidence 578899999997 99999999998821 111 11236667778888743 235666555 6664
No 123
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=26.54 E-value=4.6e+02 Score=29.21 Aligned_cols=84 Identities=20% Similarity=0.107 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhccCCCch
Q 000492 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEA 758 (1463)
Q Consensus 679 ~~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~~~~~~~~ 758 (1463)
....+...+..+.+.|+++.|...+.++...... .+....+.+..+..+-..|+...|+..++.++...+.+...
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF-----SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 3445677788888999999999888776543211 11111234677899999999999999999998887766555
Q ss_pred hhHHHHHhH
Q 000492 759 PDVYRLVGK 767 (1463)
Q Consensus 759 a~l~~l~g~ 767 (1463)
..++..+|.
T Consensus 107 ~~a~~~~g~ 115 (235)
T TIGR03302 107 DYAYYLRGL 115 (235)
T ss_pred HHHHHHHHH
Confidence 455555443
No 124
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=26.28 E-value=2.8e+02 Score=33.79 Aligned_cols=87 Identities=9% Similarity=-0.054 Sum_probs=64.6
Q ss_pred HHHHHHHHHhhCchhhhhhhhHhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCCchhhhhhhcc-----cc--
Q 000492 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----HK-- 407 (1463)
Q Consensus 335 ~~~lA~aA~~C~AyatALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~-----~~-- 407 (1463)
...-|..|..-+-|..|+-+.+..+... | ..+...-.+-.+|..+++.+.+...... +.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~--------P------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~ 70 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD--------P------NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA 70 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence 3466899999999999998888765421 1 1244556677888999999988887641 11
Q ss_pred --hhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000492 408 --LSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1463)
Q Consensus 408 --l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1463)
.-....-|.+.|++++|+.+|+..++.+
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 2234467889999999999999999864
No 125
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=26.11 E-value=1.3e+02 Score=27.34 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=21.2
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhh
Q 000492 409 SSQIVTLEHEGNWSKALEYYELQVRS 434 (1463)
Q Consensus 409 ~~~i~~yE~eg~W~kAL~~Yd~~l~~ 434 (1463)
.....-|...|+|++|+.+|+..++.
T Consensus 9 ~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 9 NNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556788999999999999999885
No 126
>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process
Probab=26.03 E-value=53 Score=37.37 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.7
Q ss_pred CCCCCCeEEEecCCCcEEEeecch
Q 000492 1287 GDRHAMNILIDQATAEVVHIDLGV 1310 (1463)
Q Consensus 1287 GDRH~~NILld~~tG~vvhIDfg~ 1310 (1463)
||=||+|++++ .|++.-|||+.
T Consensus 159 GD~hpgNFlv~--~~~i~iID~~~ 180 (229)
T PF06176_consen 159 GDPHPGNFLVS--NNGIRIIDTQG 180 (229)
T ss_pred CCCCcCcEEEE--CCcEEEEECcc
Confidence 99999999998 57799999973
No 127
>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer
Probab=26.02 E-value=90 Score=36.65 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=28.9
Q ss_pred hhhheeccCCCCCCeEEEecC---CCcEEEeecchh
Q 000492 1279 MVGYIVGLGDRHAMNILIDQA---TAEVVHIDLGVA 1311 (1463)
Q Consensus 1279 ~vgyILGLGDRH~~NILld~~---tG~vvhIDfg~~ 1311 (1463)
-...++-=||=|++|||++.. +|.+.-|||.++
T Consensus 176 ~~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya 211 (302)
T cd05156 176 GSPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYA 211 (302)
T ss_pred CCCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCC
Confidence 467889999999999999965 589999999876
No 128
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=25.94 E-value=2.2e+02 Score=29.14 Aligned_cols=62 Identities=29% Similarity=0.156 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHH
Q 000492 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLA 745 (1463)
Q Consensus 679 ~~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~L 745 (1463)
-...+|+.++..|.-|+...|.+.|.+... ..+.... ....+.-.|-.|+..|++++|+..+
T Consensus 37 ~~~a~i~lastlr~LG~~deA~~~L~~~~~--~~p~~~~---~~~l~~f~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 37 RRRALIQLASTLRNLGRYDEALALLEEALE--EFPDDEL---NAALRVFLALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCccc---cHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356788999999999999999999876532 2111111 1122344688999999999999976
No 129
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=25.75 E-value=2.2e+02 Score=35.61 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=63.9
Q ss_pred HHHHHHHhhCchhhhhhhhHhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCCchhhhhhhccc---------c
Q 000492 337 RVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH---------K 407 (1463)
Q Consensus 337 ~lA~aA~~C~AyatALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~~~---------~ 407 (1463)
-||++=.-=+|++=||+|.--.+. +.+ ..+-..-.|=++|.+|+.++-+.||-... -
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~-------~kP-------nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALE-------LKP-------NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHh-------cCC-------CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 378888888999999999975442 112 22456778999999999999999996421 1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHh
Q 000492 408 LSSQIVTLEHEGNWSKALEYYELQVR 433 (1463)
Q Consensus 408 l~~~i~~yE~eg~W~kAL~~Yd~~l~ 433 (1463)
+-....-||..++..+|-.+|+.-+.
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33445789999999999999999877
No 130
>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain
Probab=25.65 E-value=50 Score=36.21 Aligned_cols=32 Identities=22% Similarity=0.143 Sum_probs=25.7
Q ss_pred hhheeccCCCCCCeEEEecC-CCcEEEeecchh
Q 000492 1280 VGYIVGLGDRHAMNILIDQA-TAEVVHIDLGVA 1311 (1463)
Q Consensus 1280 vgyILGLGDRH~~NILld~~-tG~vvhIDfg~~ 1311 (1463)
.-..+-=||=||+||+++.. +|.+.=|||+.+
T Consensus 172 ~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~ 204 (223)
T cd05154 172 SRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELA 204 (223)
T ss_pred CCcEEEECCCCcccEEEcCCCCcEEEEEecccc
Confidence 56677789999999999975 455677999865
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=25.50 E-value=3.1e+02 Score=36.62 Aligned_cols=118 Identities=16% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCchhhhhhhhHhhhhhhhccccCCCCCCCcCCCcchHHHHHHHHHhhCCCchhhhhhhc---------c
Q 000492 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ---------S 405 (1463)
Q Consensus 335 ~~~lA~aA~~C~AyatALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdePD~~yGi~~---------~ 405 (1463)
+..||.+++++|.|.-|+..+|.-++.. |++ ....-.+..|-.+.+..|.+-.... .
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~--------Pd~------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~ 154 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQRF--------PDS------SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA 154 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhC--------CCc------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Q ss_pred cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhchh
Q 000492 406 HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 485 (1463)
Q Consensus 406 ~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~ 485 (1463)
..+.....-..+.|+.++|.++|+..+... |+ +.+...++-.+|..+|..
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-----------------p~-------------~~~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFERLSRQH-----------------PE-------------FENGYVGWAQSLTRRGAL 204 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhcC-----------------CC-------------cHHHHHHHHHHHHHcCCH
Q ss_pred hHH-HHhhhccc
Q 000492 486 HVL-DMYCKGLT 496 (1463)
Q Consensus 486 ~~L-~~~~~gl~ 496 (1463)
.-. ..|.+.+.
T Consensus 205 ~~A~~~~~~a~~ 216 (694)
T PRK15179 205 WRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHHHHH
No 132
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=25.03 E-value=90 Score=26.66 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHhhhcCcchhhchHHHHHHHH
Q 000492 87 SEELLIAVLKILKKYLMDDSVQIVDMTSQTLRGI 120 (1463)
Q Consensus 87 ~~~~~~~il~~l~~~l~~~~~~~~~~a~~~L~~i 120 (1463)
....+..++..|...|.|++..|+..|..||-+|
T Consensus 22 ~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 22 LQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4567888999999999999999999999998764
No 133
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=24.70 E-value=3.9e+02 Score=25.65 Aligned_cols=69 Identities=16% Similarity=0.073 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhccCC
Q 000492 682 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESN 755 (1463)
Q Consensus 682 ~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~~~~~ 755 (1463)
.+...+.+..+.|++..|...+..+.... +..... ..+.+..+.++...|+...|+..++.++...+.+
T Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 41 AHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKA---PDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcc---cHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 44556889999999999999988765432 111111 1234667888999999999999999888876544
No 134
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=24.07 E-value=1.8e+02 Score=25.94 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=36.3
Q ss_pred HHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhchhhHHHHhh
Q 000492 413 VTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYC 492 (1463)
Q Consensus 413 ~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~~~ 492 (1463)
..|-+.++|++|+.+++..+..+ |+ +.......-.|+..+|.++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-----------------p~-------------~~~~~~~~a~~~~~~g~~~~A~~~l 52 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-----------------PD-------------DPELWLQRARCLFQLGRYEEALEDL 52 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-----------------cc-------------cchhhHHHHHHHHHhccHHHHHHHH
Confidence 46788999999999999999964 33 1223456677899999877654333
No 135
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=23.63 E-value=39 Score=40.56 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.8
Q ss_pred CCCCCCeEEEecCCCcEEEeecchhh
Q 000492 1287 GDRHAMNILIDQATAEVVHIDLGVAF 1312 (1463)
Q Consensus 1287 GDRH~~NILld~~tG~vvhIDfg~~F 1312 (1463)
.|--|+|||||. .|+|.-.|||.|=
T Consensus 149 RDlKPENILLd~-~GHi~LtDFgL~k 173 (357)
T KOG0598|consen 149 RDLKPENILLDE-QGHIKLTDFGLCK 173 (357)
T ss_pred ccCCHHHeeecC-CCcEEEeccccch
Confidence 588999999996 9999999999884
No 136
>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members. The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista
Probab=23.47 E-value=61 Score=36.63 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=23.6
Q ss_pred hhheeccCCCCCCeEEEecCCCcEE-Eeecchh
Q 000492 1280 VGYIVGLGDRHAMNILIDQATAEVV-HIDLGVA 1311 (1463)
Q Consensus 1280 vgyILGLGDRH~~NILld~~tG~vv-hIDfg~~ 1311 (1463)
..+.|-=||=|++|||++. |++. -|||+.+
T Consensus 162 ~~~~l~HGD~~~~Nvlv~~--~~i~giIDw~~a 192 (235)
T cd05155 162 GPPVWFHGDLAPGNLLVQD--GRLSAVIDFGCL 192 (235)
T ss_pred CCceEEeCCCCCCcEEEEC--CCEEEEEeCccc
Confidence 3455667999999999983 6664 8999965
No 137
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=23.36 E-value=5.1e+02 Score=26.35 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhh-------hHHHHHHHHHH
Q 000492 548 LHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEE-------STEYIYSAIVK 595 (1463)
Q Consensus 548 L~~~L~al~~~d~~~~~~~i~~aR~~l~~~Lsa~s~E-------Sy~~~Y~~lvr 595 (1463)
+..+..++..||++.+...+.+|++-+..=.+.+-.| +..++|.++.+
T Consensus 33 l~~a~~a~~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~g~eia~~L~~lY~y~~~ 87 (122)
T PF02561_consen 33 LKQAKEAIEQGDIEEKNEALQKAQDIITELQSSLDFEKGGEIADNLFRLYDYMIR 87 (122)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHH
Confidence 4467778889999999999999998655433434443 23445666554
No 138
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=22.80 E-value=5.4e+02 Score=26.79 Aligned_cols=67 Identities=10% Similarity=-0.091 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 000492 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 753 (1463)
Q Consensus 679 ~~~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~~~ 753 (1463)
....|...+.++-+.|++..|.....++..+. |.+..+.+-.+.++-..|+..+|+..++..+.-.+
T Consensus 57 ~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 57 SWRAHIALAGTWMMLKEYTTAINFYGHALMLD--------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 46677888899999999999988887765442 12223345678888899999999998877665444
No 139
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=22.37 E-value=77 Score=35.79 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=58.6
Q ss_pred hhccchhhheeccCCCCCCeEEE-ecCCCcEEEeecchhhccccCCCCCCCCCcccccchhhccccccccchhHHHHHHH
Q 000492 1274 VAASSMVGYIVGLGDRHAMNILI-DQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKT 1352 (1463)
Q Consensus 1274 ~A~~S~vgyILGLGDRH~~NILl-d~~tG~vvhIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~F~~~c~~t 1352 (1463)
+.=++|+=|++|=+|||-.|+.= .-+.|-++|+|=|-.|+.-..-+.+=..| .--=-.||++-...
T Consensus 92 liDm~IFDFLigN~DRhhye~f~~fgn~~~l~~LDNgrgFG~~~~de~sIlaP-------------L~QcC~iRrST~~r 158 (221)
T PF06702_consen 92 LIDMAIFDFLIGNMDRHHYETFNKFGNEGFLLHLDNGRGFGRPSHDELSILAP-------------LYQCCRIRRSTWER 158 (221)
T ss_pred HHHHHHHHHHhcCCcchhhhhhhccCCCceEEEEeCCcccCCCCCCccchhcc-------------HHHhhhccccHHHH
Confidence 44567888999999999988653 22346699999998885432111111122 11113577777778
Q ss_pred HHHHhcChHHHHHHHHH-HccCCCc
Q 000492 1353 LSVMRTNKEALLTIVEV-FIHDPLY 1376 (1463)
Q Consensus 1353 ~~~LR~~~~~l~~iLe~-f~~DpL~ 1376 (1463)
++.|.+....|..+|+- +..||+.
T Consensus 159 L~~l~~~~~~Ls~~m~~s~~~D~l~ 183 (221)
T PF06702_consen 159 LQLLSKGGYRLSDLMRESLSRDPLA 183 (221)
T ss_pred HHHhccCCCcHHHHHHHHhccCccC
Confidence 88888777778777764 5677664
No 140
>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes. ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo
Probab=22.15 E-value=1.5e+02 Score=33.16 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=27.3
Q ss_pred hhheeccCCCCCCeEEEecCCCcEEEeecchh
Q 000492 1280 VGYIVGLGDRHAMNILIDQATAEVVHIDLGVA 1311 (1463)
Q Consensus 1280 vgyILGLGDRH~~NILld~~tG~vvhIDfg~~ 1311 (1463)
...+|-=||=|++|||++..+|.+.=|||-++
T Consensus 168 ~~~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a 199 (235)
T cd05157 168 SPIVFCHNDLLSGNIIYNEEKNSVKFIDYEYA 199 (235)
T ss_pred CCEEEEcCCCCcCcEEEeCCCCCEEEEEcccC
Confidence 45678889999999999975688999999865
No 141
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=22.13 E-value=5.8e+02 Score=29.29 Aligned_cols=81 Identities=14% Similarity=0.038 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhh
Q 000492 681 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPD 760 (1463)
Q Consensus 681 ~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~~~~~~~~a~ 760 (1463)
+.+-.-|..+-+.|++..|...+.++...- +. ++.-..+.+..|......|+...|+...+.+++..+.++..+.
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~---s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRY--PF---GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC---ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 334556778888999999999888775432 11 1222234578889999999999999999999999998888888
Q ss_pred HHHHHh
Q 000492 761 VYRLVG 766 (1463)
Q Consensus 761 l~~l~g 766 (1463)
++.++|
T Consensus 108 a~Y~~g 113 (243)
T PRK10866 108 VLYMRG 113 (243)
T ss_pred HHHHHH
Confidence 888877
No 142
>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2.7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....
Probab=22.02 E-value=1e+02 Score=34.27 Aligned_cols=32 Identities=31% Similarity=0.324 Sum_probs=22.8
Q ss_pred hhheeccCCCCCCeEEEecCCCcEEEeecchh
Q 000492 1280 VGYIVGLGDRHAMNILIDQATAEVVHIDLGVA 1311 (1463)
Q Consensus 1280 vgyILGLGDRH~~NILld~~tG~vvhIDfg~~ 1311 (1463)
...++.=+|-++.|||++..+|++.-|||-++
T Consensus 141 ~~~v~cHnDl~~~Nil~~~~~~~~~lIDfEya 172 (211)
T PF01633_consen 141 SPLVFCHNDLNPGNILINNKDGEVKLIDFEYA 172 (211)
T ss_dssp GGEEEE-S--SGGGEEETSSSSCEEE--GTT-
T ss_pred CCceEeeccCccccEEeccCCCeEEEecHHHH
Confidence 34788899999999999777999999999876
No 143
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=21.88 E-value=2.3e+02 Score=26.29 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=0.0
Q ss_pred CchhhhhhhhHhhhhhhhccccCCCCCCCcCCC-cchHHHHHHHHHhhCCCchhhhhhhcccchh--------hHHHHHH
Q 000492 346 GSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLET-LPRHIEILVSAVTQINEPDSLYGIIQSHKLS--------SQIVTLE 416 (1463)
Q Consensus 346 ~AyatALly~E~~~~~~~~~~~~~~~~~s~~~~-~~~~~e~L~~Iy~~IdePD~~yGi~~~~~l~--------~~i~~yE 416 (1463)
+.|..|+.+.|..+... ... .....-.|-.+|-+.++.+.++.+.+..... ....-|.
T Consensus 3 ~~y~~Ai~~~~k~~~~~-------------~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~ 69 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELD-------------PTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLL 69 (84)
T ss_dssp T-HHHHHHHHHHHHHHH-------------CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHC-------------CCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q ss_pred hhCCHHHHHHHHHHH
Q 000492 417 HEGNWSKALEYYELQ 431 (1463)
Q Consensus 417 ~eg~W~kAL~~Yd~~ 431 (1463)
+.|+|++|+..|+..
T Consensus 70 ~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 70 KLGKYEEAIKALEKA 84 (84)
T ss_dssp HTT-HHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhcC
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=21.80 E-value=2.4e+02 Score=29.31 Aligned_cols=61 Identities=26% Similarity=0.164 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHH
Q 000492 683 LLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYI 748 (1463)
Q Consensus 683 wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l 748 (1463)
.+..|+.+-..|.+..|...+..+..-. ..+.....+++-.|+++..+|+...|+..|+.+
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~ 111 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLARILLQQGQYDEALATLQQI 111 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 4667899999999999999988764321 112222345678899999999999999998653
No 145
>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity. Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....
Probab=21.74 E-value=92 Score=34.84 Aligned_cols=48 Identities=23% Similarity=0.327 Sum_probs=31.7
Q ss_pred cCCCCCCeEEEecCCCcEEEeecchhhc---cccCCCCCCCCCcccccchhh
Q 000492 1286 LGDRHAMNILIDQATAEVVHIDLGVAFE---QGLMLKTPERVPFRLTRDIID 1334 (1463)
Q Consensus 1286 LGDRH~~NILld~~tG~vvhIDfg~~F~---~g~~l~~pE~VPFRLTrniv~ 1334 (1463)
=+|-.|+||+++ ..|++.-+|||.+.. ........-..|.=..|++..
T Consensus 121 H~dikp~NIl~~-~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~ 171 (260)
T PF00069_consen 121 HRDIKPENILLD-ENGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQ 171 (260)
T ss_dssp ESSBSGGGEEES-TTSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHT
T ss_pred cccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence 378899999999 699999999998853 122222222333345566655
No 146
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=21.43 E-value=5.5e+02 Score=29.97 Aligned_cols=83 Identities=17% Similarity=0.126 Sum_probs=57.8
Q ss_pred HHHHHHHH-HHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchh
Q 000492 681 QHLLESAS-TLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAP 759 (1463)
Q Consensus 681 ~~wl~~A~-laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~~~~~~~~a 759 (1463)
..+...|- +..+.|++..|..++..+... .+.+...+ .+.+-.+++++.+|+...|+...+.++++++.+....
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~---~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~ 217 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQP---NANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAA 217 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 34444444 336678999998887665432 22111111 3456789999999999999999999999988777778
Q ss_pred hHHHHHhHH
Q 000492 760 DVYRLVGKW 768 (1463)
Q Consensus 760 ~l~~l~g~w 768 (1463)
+++..+|.-
T Consensus 218 dAl~klg~~ 226 (263)
T PRK10803 218 DAMFKVGVI 226 (263)
T ss_pred HHHHHHHHH
Confidence 887776643
No 147
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=21.41 E-value=6e+02 Score=26.13 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=33.2
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhh-------hHHHHHHHHHH
Q 000492 547 NLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEE-------STEYIYSAIVK 595 (1463)
Q Consensus 547 ~L~~~L~al~~~d~~~~~~~i~~aR~~l~~~Lsa~s~E-------Sy~~~Y~~lvr 595 (1463)
.+..+-.|+.+||++.+...|.+|..-+..=.+++-.| .-.++|.++.+
T Consensus 34 ~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~eL~~~Ld~e~ggeiA~nL~~LY~y~~~ 89 (124)
T TIGR00208 34 FIRLAAQAIENDDIERKNENLIKAQNIIQELNFTLDREKNIELSASLGALYDYMYR 89 (124)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH
Confidence 45567778899999999999999987654322333332 34456766665
No 148
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=20.78 E-value=1.5e+02 Score=36.78 Aligned_cols=110 Identities=17% Similarity=0.120 Sum_probs=72.1
Q ss_pred CcchHHHHHHHHHhhCCCchhhhhhhc----------cc-chhhHHHHHHhhCCHHHHHHHH---HHHHhhhhhcccCCC
Q 000492 378 TLPRHIEILVSAVTQINEPDSLYGIIQ----------SH-KLSSQIVTLEHEGNWSKALEYY---ELQVRSDVMLQMDGN 443 (1463)
Q Consensus 378 ~~~~~~e~L~~Iy~~IdePD~~yGi~~----------~~-~l~~~i~~yE~eg~W~kAL~~Y---d~~l~~~~~~~~~~~ 443 (1463)
..+..-|+-.+|-.++++-|-...-.+ .+ .+....+-+||+|.++.|++.. |..+..
T Consensus 285 ~~~~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s--------- 355 (831)
T PRK15180 285 KQDQIREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGT--------- 355 (831)
T ss_pred CCcchhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcC---------
Confidence 344566778889999999887665432 11 1334557789999999888762 111111
Q ss_pred CCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhchhhHHHHhhhccccccCCCCCCcchhHHHHHHHhccCCCC
Q 000492 444 SGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWD 523 (1463)
Q Consensus 444 s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrLg~WD 523 (1463)
+ .....-+||+++.||-|++......++.... -.++++...++-.|-.||-.|
T Consensus 356 -~-----------------------~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~e---ie~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 356 -T-----------------------DSTLRCRLRSLHGLARWREALSTAEMMLSNE---IEDEEVLTVAAGSADALQLFD 408 (831)
T ss_pred -C-----------------------chHHHHHHHhhhchhhHHHHHHHHHHHhccc---cCChhheeeecccHHHHhHHH
Confidence 1 0123689999999999999877777776543 125666666666777666554
No 149
>cd00180 PKc Catalytic domain of Protein Kinases. Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which
Probab=20.71 E-value=2.4e+02 Score=29.60 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=24.6
Q ss_pred ccCCCCCCeEEEecCCCcEEEeecchhhc
Q 000492 1285 GLGDRHAMNILIDQATAEVVHIDLGVAFE 1313 (1463)
Q Consensus 1285 GLGDRH~~NILld~~tG~vvhIDfg~~F~ 1313 (1463)
--||-+|+||+++..+|++.=+|||.+-.
T Consensus 114 ~H~dl~~~ni~~~~~~~~~~l~d~~~~~~ 142 (215)
T cd00180 114 IHRDLKPENILLDSDNGKVKLADFGLSKL 142 (215)
T ss_pred eccCCCHhhEEEeCCCCcEEEecCCceEE
Confidence 34899999999997689999999997743
No 150
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=20.43 E-value=1.5e+02 Score=21.83 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=24.6
Q ss_pred hHHHHHHHHHcCChHHHHHHHHHHHhhccC
Q 000492 725 RLEEAKLLRAQGQHEMAINLAKYISENYES 754 (1463)
Q Consensus 725 ~lE~Ak~lW~~Ge~~~Ai~~Lq~l~~~~~~ 754 (1463)
.+..|.++-..|+...|+..++.++.+++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 355677777889999999999999988753
No 151
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=20.24 E-value=1.7e+03 Score=27.48 Aligned_cols=60 Identities=13% Similarity=-0.056 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHH
Q 000492 681 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKY 747 (1463)
Q Consensus 681 ~~wl~~A~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lq~ 747 (1463)
......+.++-+.|+++.|...+..++.+.. .|.... ....+.++|..|+...|.++-+.
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-----~p~~~~--~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKE-----QLDAND--LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-----CCCHHH--HHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556778999999999999998774333321 121222 24689999999999999887654
No 152
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=20.18 E-value=1.1e+02 Score=24.93 Aligned_cols=25 Identities=12% Similarity=0.005 Sum_probs=22.3
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhhh
Q 000492 411 QIVTLEHEGNWSKALEYYELQVRSD 435 (1463)
Q Consensus 411 ~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1463)
....|+..|++++|..+|+..++..
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3568999999999999999999965
Done!