Query 000492
Match_columns 1463
No_of_seqs 348 out of 1513
Neff 6.9
Searched_HMMs 29240
Date Tue Mar 26 15:56:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000492.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_267-271//hhsearch_pdb/000492hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x6h_A GH13170P, VPS34, phosph 1.0 1 1 552.1 31.4 394 972-1462 277-693 (696)
2 1e7u_A Phosphatidylinositol 3- 1.0 1 1 535.4 30.4 414 895-1380 445-903 (961)
3 2y3a_A Phosphatidylinositol-4, 1.0 1 1 534.5 32.8 414 895-1380 592-1039(1092)
4 2wxf_A Phosphatidylinositol-4, 1.0 1 1 532.8 33.0 414 895-1380 439-887 (940)
5 3ls8_A Phosphatidylinositol 3- 1.0 1 1 524.4 30.9 454 896-1448 63-603 (614)
6 3hhm_A Phosphatidylinositol-4, 1.0 1 1 515.5 25.1 451 895-1448 585-1071(1091)
7 1w1n_A Phosphatidylinositol 3- 1.0 1 1 90.8 1.6 33 1431-1463 1-33 (33)
8 2xpi_A Anaphase-promoting comp 1.0 1 1 27.9 23.9 66 679-752 304-369 (597)
9 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 25.4 25.6 64 680-751 203-266 (388)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 24.7 30.4 20 337-356 31-50 (450)
No 1
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=1.00 E-value=1 Score=552.13 Aligned_cols=394 Identities=21% Similarity=0.349 Sum_probs=286.8
Q ss_pred HHHHHHHHHHHHHHCCH---HHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Q ss_conf 99999999999983781---47878886013661011000132014222499999999999974------5779999999
Q 000492 972 QFALVSLVKKMAIDHPY---HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSS------YHGAIIRQMK 1042 (1463)
Q Consensus 972 ~~~L~~Ll~~i~~~hP~---~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~------~~~~~~~~~~ 1042 (1463)
...|..+|++.+...|. +.+|.|.+.+..+.... .+....... -....+.++..+.+ .....+..-.
T Consensus 277 ~s~La~FLl~rA~~n~~i~h~l~W~L~~e~~~~~~~~---~~~~~~~~~-~~~il~~~l~~l~~g~~~~~~~~~~l~~Q~ 352 (696)
T 2x6h_A 277 PANLCTFLIQRACTNATLANYFYWYLSIEVEEVESVR---KQDERAHDM-YAMVLKMFLKVLENGNFNLRGIFYNLRKQR 352 (696)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHHHHHHHCC--------CCHHHHHHH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCC---CCCCHHHHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 7779999999985286668999987571234763112---113068999-999999999986334753189999999999
Q ss_pred HHHHHHHHHHHHHC-CCCCCCCCCC-CHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEECCCC
Q ss_conf 99999999863320-2333333444-313331013--466555555556899887666788672011256-389833888
Q 000492 1043 QMVDVYIKLAELET-RREDTNKRIQ-LPREIRCLR--QLELVPVVTATVPIDCTCQYNEGSFPYFKGLAE-SVMVMNGIN 1117 (1463)
Q Consensus 1043 ~l~~~~~~la~~~~-~~~~~~~~~~-l~~~~~~l~--~l~~~p~~t~~lp~~~~~~~~~~~~~~i~~f~~-~v~v~~s~~ 1117 (1463)
.+++.+.+++..-. .+....+++. +...+.... ...+..+....+|.+|. ++|.+|.+ .+.|++|++
T Consensus 353 ~~~~~L~~i~~~ik~~~~~~~~k~e~L~~~L~~~~~~~~~l~~~~~~~lP~~p~--------v~I~~~~~~~~~V~~S~~ 424 (696)
T 2x6h_A 353 RFIDELVKLVKLVAKEPGNRNKKTEKFQKLLAEQDMFKVNFTNFEPIPFPLDPE--------IYITKIVPMRTSLFKSAL 424 (696)
T ss_dssp HHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHSTTSSSSCTTSCCCEECSSCTT--------SEEEEECGGGCEECSSSS
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCC--------EEEEEEECCEEEECCCCC
T ss_conf 999999999998711686378899999998532111000102378756799987--------699999437179833046
Q ss_pred CCEEEEEEECC-CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCEEEECCCCCCEEEECCCCCC
Q ss_conf 61599998079-95686543228763046689999999999999738112357710002128871899843477289875
Q 000492 1118 APKVVECFGSD-GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVP 1196 (1463)
Q Consensus 1118 ~Pk~i~~~gsd-G~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~kR~L~i~tY~ViPLs~~~GLIE~v~~t~t 1196 (1463)
+||+|+|+|+| |+.|.||+|+| ||+|||+|+||+|++||.+|++++ |+|.+++|+|||+++++||||||+ +.|
T Consensus 425 ~P~~l~~~gsD~G~~y~~i~K~g-DDLRQD~rv~Ql~~lmn~il~~~~----~~L~i~~Y~Vipls~~~GLIE~V~-s~t 498 (696)
T 2x6h_A 425 MPAKLTFVTSIAHHEYAAIFKHG-DDLRQDQLILQMITLMDKLLRREN----LDLKLTPYKVLATSSKHGFLQYVD-SCT 498 (696)
T ss_dssp CCEEEEEEETTTTCEEEEEEECS-SCTHHHHHHHHHHHHHHHHHHHTT----CCCCCCCCCEEESSTTCEEEECCC-CEE
T ss_pred CCEEEEEEECCCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHHHHCC----CCCEEECCEEEECCCCCCEEEECC-CCC
T ss_conf 97489999637887045787437-654216899999999999998479----983775307996367787234579-755
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH----HHHHHHHH
Q ss_conf 58875210138998888788850168887620253768999999986233348999999808954799----99999998
Q 000492 1197 LGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWF----EKRLAYTR 1272 (1463)
Q Consensus 1197 l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w~----~~R~~ft~ 1272 (1463)
+++|+... + .+++||.+.|+++..|| .+|.+|++
T Consensus 499 l~~i~~~~----------~--------------------------------~l~~~f~~~~p~~~~~~~~~~~ar~nF~~ 536 (696)
T 2x6h_A 499 VAEVLARE----------G--------------------------------NIHNFFRKHHPCDNGPYGISAEVMDTYIK 536 (696)
T ss_dssp HHHHHHHS----------S--------------------------------SHHHHHHHHSBCTTSSSSBCHHHHHHHHH
T ss_pred HHHHHHHC----------C--------------------------------HHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 99998706----------7--------------------------------09999998788962012427999999999
Q ss_pred HHHCCCHHHHEECCCCCCCCEEEEECCCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCH--HHHHHH
Q ss_conf 420000234203147889970788448991999651010001357899988871113203402554443101--288899
Q 000492 1273 SVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGV--FRRCCE 1350 (1463)
Q Consensus 1273 S~A~~SivgyiLgLGDRH~~NILid~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~--F~~~~~ 1350 (1463)
|+|+|||+||||||||||++|||||+ ||+++|||||++|+++ +.||+|||||||||+++||+.|+||. |+.+|+
T Consensus 537 SlA~~Svv~YILGlGDRH~~NILid~-tG~v~HIDFG~~f~~~---p~pe~VPFRLT~~mv~~mG~~g~eg~~~Fr~~c~ 612 (696)
T 2x6h_A 537 SCAGYCVITYLLGVGDRHLDNLLLTT-NGKLFHIDFGYILGRD---PKPMPPPMKLSKEMVEAMGGISSEHHHEFRKQCY 612 (696)
T ss_dssp HHHHHHHHHHHHTCCCCCTTTEEECT-TSCEEECCCCSCTTCC---SSSCCCSSCCCHHHHHHTTSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEC-CCCEEEEEEHHHHCCC---CCCCCCCEECCHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 99999999998348889976568807-8998988534553668---8776798631799999838977610899999999
Q ss_pred HHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999710969999999997118875212581679754310232212799999200034245999999998510799899
Q 000492 1351 KTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEGG 1430 (1463)
Q Consensus 1351 ~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~~v~~KL~g~~~~ 1430 (1463)
.++++||++++.|++++++|++|++.+|...+. .++..+++|+..-.+.
T Consensus 613 ~~~~~LR~~~~~il~ll~lml~~~lp~~~~~~~-------------------------------~~i~~l~~rf~l~lse 661 (696)
T 2x6h_A 613 TAYLHLRRHANVMLNLFSLMVDATVPDIALEPD-------------------------------KAVKKVEENLQLGLTD 661 (696)
T ss_dssp HHHHHHHHTHHHHHHHHHHTTTCCCTTTTSSGG-------------------------------GHHHHHHHHHTTTSCH
T ss_pred HHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCHH-------------------------------HHHHHHHHHHCCCCCH
T ss_conf 999999867899999999997589975466878-------------------------------9999999983799999
Q ss_pred CCCCHHHHHHHHHHHHCCCH--HHHHHCCCCCCC
Q ss_conf 86699999999999901902--256207343257
Q 000492 1431 EMRSVHGQVQQLIQDAIDPE--RFCLMFPGWGAW 1462 (1463)
Q Consensus 1431 ~~lsv~~qV~~LI~~Atd~~--NL~~m~~gW~pw 1462 (1463)
-....+|..||++|.+.- ++--++..|..|
T Consensus 662 --eea~~~~~~lI~~S~~s~~t~~~d~~h~~aq~ 693 (696)
T 2x6h_A 662 --EEAVQHLQSLLDVSITAVMPALVEQIHRFTQY 693 (696)
T ss_dssp --HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --99999999999999853448899999999999
No 2
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=1.00 E-value=1 Score=535.40 Aligned_cols=414 Identities=21% Similarity=0.289 Sum_probs=307.9
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHH---HH--CC------------CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 9999999998335998506788898979---74--04------------7628999999984100364420341477762
Q 000492 895 GLALEGYKRCLVIGDKYDVRVVFRLVSL---WF--SL------------SSRQNVIKNMVDTIDEVQSYKFIPLVYQIAS 957 (1463)
Q Consensus 895 ~~ai~~Yl~sL~~~~~~~~~~~~RllsL---Wl--~~------------~~~~~v~~~~~~~l~~vps~kfl~~lpQL~s 957 (1463)
..|+..+++|+.+.+......+..+|.- |- .. -.++.|.....+.+...|...++..+|||+.
T Consensus 445 p~aL~k~l~sv~w~~~~~v~e~~~lL~~~~~W~~~~~~~~~ALeLL~~~f~d~~VR~yAV~~L~~~~d~~l~~YL~QLVQ 524 (961)
T 1e7u_A 445 PKAYPKLFSSVKWGQQEIVAKTYQLLAKREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLEDDDVLHYLLQLVQ 524 (961)
T ss_dssp GGGHHHHHTSSCTTCHHHHHHHHHHHHCCHHHHHSCCCHHHHHHTTSTTCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 47887875456789989999999987336777788989999998568768997899999999982999999999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCH---HHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 0278754345241999999999999983781---47878886013661011000132014222499999999999974--
Q 000492 958 RMGSTKDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSS-- 1032 (1463)
Q Consensus 958 Rl~~~~~~~~~~~f~~~L~~Ll~~i~~~hP~---~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~-- 1032 (1463)
.|.+..- ..+.|..+|++.+...+. +.+|.|.+..... ...+.|. ..+++.+..
T Consensus 525 aLkyE~~------~~s~L~~fLl~ra~~n~~i~h~l~W~l~~e~~~~---~~~~~r~------------~~ll~~~l~~~ 583 (961)
T 1e7u_A 525 AVKFEPY------HDSALARFLLKRGLRNKRIGHFLFWFLRSEIAQS---RHYQQRF------------AVILEAYLRGC 583 (961)
T ss_dssp HGGGCSS------SSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC---TTTHHHH------------HHHHHHHHTTS
T ss_pred HHHHCCC------CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC---HHHHHHH------------HHHHHHHHHHC
T ss_conf 9853334------6776999999998618377899998855231578---6689999------------99999998644
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--------CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --5779999999999999998633202333333444--------313331013466555555556899887666788672
Q 000492 1033 --YHGAIIRQMKQMVDVYIKLAELETRREDTNKRIQ--------LPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPY 1102 (1463)
Q Consensus 1033 --~~~~~~~~~~~l~~~~~~la~~~~~~~~~~~~~~--------l~~~~~~l~~l~~~p~~t~~lp~~~~~~~~~~~~~~ 1102 (1463)
.....+..-..+++.+.+++..-.. .... +.. +...+..+...+ +| .+..+|.+|. ..
T Consensus 584 ~~~~~~~~~~q~~~~~~L~~i~~~ik~-~~~~-~~~~~~~~~~~l~~~L~~l~~i~-vP-~~~~lP~dP~--------v~ 651 (961)
T 1e7u_A 584 GTAMLHDFTQQVQVIDMLQKVTIDIKS-LSAE-KYDVSSQVISQLKQKLENLQNLN-LP-QSFRVPYDPG--------LK 651 (961)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSGG-GGCC-SSCCCHHHHHHHHHHHHHHHHTT-SC-SCEEETTEEE--------EE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCC-CCCCHHHHHHHHHHHHHHHHCCC-CC-CCCCCCCCCC--------EE
T ss_conf 298999999999999999999999876-4000-02311667999999998642075-89-8765799995--------48
Q ss_pred CCCC-CCEEEEECCCCCCEEEEEEECCCC-----EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECC
Q ss_conf 0112-563898338886159999807995-----6865432287630466899999999999997381123577100021
Q 000492 1103 FKGL-AESVMVMNGINAPKVVECFGSDGH-----KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTY 1176 (1463)
Q Consensus 1103 i~~f-~~~v~v~~s~~~Pk~i~~~gsdG~-----~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~kR~L~i~tY 1176 (1463)
|.+| .+.+.|++|+++|++|+++|+||+ .|.||+|+| ||+|||+|+||+|++||.+|+++ +|+|.+++|
T Consensus 652 i~~i~~~~~~V~~S~~~P~~l~~~g~Dg~~~~~~~~~~i~K~g-DDLRQD~~v~Ql~~lmn~il~~~----~~~L~i~~Y 726 (961)
T 1e7u_A 652 AGALVIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHG-DDLRQDMLILQILRIMESIWETE----SLDLCLLPY 726 (961)
T ss_dssp EEEECGGGCEECSSTTCCEEEEEEESCTTCSCCCCEEEEEEES-SCCHHHHHHHHHHHHHHHHHHHT----TCCCCCCCC
T ss_pred EEEEECCEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECC-CCCCCCHHHHHHHHHHHHHHHHC----CCCEEEEEE
T ss_conf 9876334379850257956999972687756677523898458-54434364999999999998635----888288830
Q ss_pred EEEECCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 28871899843477289875588752101389988887888501688876202537689999999862333489999998
Q 000492 1177 KVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLER 1256 (1463)
Q Consensus 1177 ~ViPLs~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~ 1256 (1463)
+|||+++++||||||+|+.|+++|+.... |....+ -.+++++||.+.
T Consensus 727 ~Vipls~~~GlIE~V~ns~tl~~I~~~~~---g~~~~f------------------------------~~~~L~~w~~~~ 773 (961)
T 1e7u_A 727 GCISTGDKIGMIEIVKDATTIAKIQQSTV---GNTGAF------------------------------KDEVLSHWLKEK 773 (961)
T ss_dssp CEEEEETTEEEEECCSSEEEHHHHHHHHS---CSSSCC------------------------------CSSHHHHHHHHH
T ss_pred EEEECCCCCCEEEECCCCCCHHHHHHHCC---CCCCCC------------------------------CHHHHHHHHHHH
T ss_conf 49987788775776599746999998536---752224------------------------------416899999985
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCHHHHEECCCCCCCCEEEEECCCCCEEEEECCHHHCCCCC-CC-CCCCCCCCCCCCHHH
Q ss_conf 0895479999999998420000234203147889970788448991999651010001357-89-998887111320340
Q 000492 1257 FLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LK-TPERVPFRLTRDIID 1334 (1463)
Q Consensus 1257 f~~~~~w~~~R~~ft~S~A~~SivgyiLgLGDRH~~NILid~~tG~vvhIDfg~~f~~g~~-l~-~pE~VPFRLTrniv~ 1334 (1463)
+++++.|+.+|.+|++|+|+|||+||||||||||++|||||+ ||+++|||||++|++++. ++ .||+|||||||||++
T Consensus 774 ~~~~~~~~~ar~~F~~S~A~ySvv~YILGigDRH~~NILid~-tG~v~HIDFG~~f~~~~~~l~~~pE~vPFRLT~~mv~ 852 (961)
T 1e7u_A 774 CPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMISE-TGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLF 852 (961)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEET-TCCEEECCCCCC----------CCCCCSSCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 998689999999999988999899897005578876568835-7778988533432468655677888898424799999
Q ss_pred CCCCCCCC-----CHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 25544431-----01288899999997109699999999971188752125
Q 000492 1335 GMGVTGVE-----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1380 (1463)
Q Consensus 1335 ~mG~~g~e-----G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~ 1380 (1463)
+||+.|++ |.|+.+|+.++++||++++.|++++++|++||+.+|..
T Consensus 853 ~mG~~g~e~s~~fg~F~~~c~~~~~~LR~~~~~l~~ll~lm~~~~lp~~~~ 903 (961)
T 1e7u_A 853 VMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLTS 903 (961)
T ss_dssp HTTCCSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHSCSSCCC
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 856567766452789999999999999975899999999984699976586
No 3
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=1.00 E-value=1 Score=534.49 Aligned_cols=414 Identities=20% Similarity=0.273 Sum_probs=306.8
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 999999999833599850678889897974047------------62899999998410036442034147776202787
Q 000492 895 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 962 (1463)
Q Consensus 895 ~~ai~~Yl~sL~~~~~~~~~~~~RllsLWl~~~------------~~~~v~~~~~~~l~~vps~kfl~~lpQL~sRl~~~ 962 (1463)
..|+..+++|+.+.+......+..++.-|-..+ .++.|.....+.+...|...++..+|||+..|.+.
T Consensus 592 p~aL~k~l~sv~w~~~~e~~e~~~lL~~W~~i~p~~ALeLL~~~f~d~~VR~yAV~~L~~~~d~~l~~yLpQLVQaLkyE 671 (1092)
T 2y3a_A 592 PQSLPKLLLSIKWNKLEDVAQLQALLQIWPKLPPREALELLDFNYPDQYVREYAVGCLRQMSDEELSQYLLQLVQVLKYE 671 (1092)
T ss_dssp GGGHHHHHHHSCTTCHHHHHHHHHHHHTSCCCCHHHHGGGGSTTCCCTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 07889998416889988999999997058999999999866865899899999999997399999999999999998606
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCH---HHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHH----HHHH
Q ss_conf 54345241999999999999983781---4787888601366101100013201422249999999999997----4577
Q 000492 963 KDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELS----SYHG 1035 (1463)
Q Consensus 963 ~~~~~~~~f~~~L~~Ll~~i~~~hP~---~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~----~~~~ 1035 (1463)
.- ..+.|..+|++.+...|. +.+|.|.+...... .+.|. ..+++.+. ....
T Consensus 672 ~~------~~s~L~~fLl~ra~~n~~i~h~l~W~L~~e~~~~~----~~~r~------------~~lle~~~~~~~~~~~ 729 (1092)
T 2y3a_A 672 PF------LDCALSRFLLERALDNRRIGQFLFWHLRSEVHTPA----VSVQF------------GVILEAYCRGSVGHMK 729 (1092)
T ss_dssp SS------SSCHHHHHHHHHHTSCSSHHHHHHHHHHHHHTSHH----HHHHH------------HHHHHHHHHHTTTTHH
T ss_pred CC------CCCHHHHHHHHHHHHCHHHHHHHHHHEEECCCCCH----HHHHH------------HHHHHHHHHHCHHHHH
T ss_conf 55------65679999999986485778999977122206915----89999------------9999999842678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCC-CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EE
Q ss_conf 9999999999999998633202---333333444-313331013466555555556899887666788672011256-38
Q 000492 1036 AIIRQMKQMVDVYIKLAELETR---REDTNKRIQ-LPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAE-SV 1110 (1463)
Q Consensus 1036 ~~~~~~~~l~~~~~~la~~~~~---~~~~~~~~~-l~~~~~~l~~l~~~p~~t~~lp~~~~~~~~~~~~~~i~~f~~-~v 1110 (1463)
.+.+|. .+++.+..++..-.. +....++.. +.+.+........ ++...+|.+| .+.|.+|.+ .+
T Consensus 730 ~l~~Q~-~~~~~L~~is~~ik~~~~~~~r~k~~e~L~~~l~~~~~~~~--~~~~~lP~~P--------~v~I~~~~~~~~ 798 (1092)
T 2y3a_A 730 VLSKQV-EALNKLKTLNSLIKLNAVKLSRAKGKEAMHTCLKQSAYREA--LSDLQSPLNP--------CVILSELYVEKC 798 (1092)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHSTTHHHH--TSSSCCSSCS--------SBCCCCCCGGGC
T ss_pred HHHHHH-HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHC--CCCCCCCCCC--------CEEEEEEECCCE
T ss_conf 999999-99999999999985246544378899999998604211213--7898789997--------547888844723
Q ss_pred EEECCCCCCEEEEEEECC--CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCEEEECCCCCCEE
Q ss_conf 983388861599998079--956865432287630466899999999999997381123577100021288718998434
Q 000492 1111 MVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGIL 1188 (1463)
Q Consensus 1111 ~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~kR~L~i~tY~ViPLs~~~GLI 1188 (1463)
.|++|+++|++|+++|+| |+.|.||+|+| ||+|||+|+||+|++||.+|++++ |+|.+++|+|||+++++|||
T Consensus 799 ~V~~S~~~P~rL~~~gsD~~G~~y~~L~K~g-DDLRQD~rv~Ql~~lmn~ll~~~~----~~L~i~~Y~Vipls~~~GLI 873 (1092)
T 2y3a_A 799 KYMDSKMKPLWLVYSSRAFGEDSVGVIFKNG-DDLRQDMLTLQMLRLMDLLWKEAG----LDLRMLPYGCLATGDRSGLI 873 (1092)
T ss_dssp EECSSTTCCEEEEEECTTTSSSEEEEEECCS-SCCHHHHHHHHHHHHHHHHHHHHS----CCCCCCCCCEECCSSSCCEE
T ss_pred EEECCCCCCEEEEEEECCCCCCEEEEEEECC-CCCCHHHHHHHHHHHHHHHHHHCC----CCEEEECCEEEEECCCCCEE
T ss_conf 8803112856999993377886145798448-321124899999999999998489----88188633489845988857
Q ss_pred EECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 772898755887521013899888878885016888762025376899999998623-3348999999808954799999
Q 000492 1189 EWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENF-RPVLHYFFLERFLQPAYWFEKR 1267 (1463)
Q Consensus 1189 E~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~-~pvl~~~f~~~f~~~~~w~~~R 1267 (1463)
|||+|+.|+++|+.... +... . ..+ .+++++||.+.+ .++.|+.+|
T Consensus 874 E~V~ns~TL~~I~~~~~---~~~~---~--------------------------~~f~~~~L~~~~~~~~-~~~~~~~ar 920 (1092)
T 2y3a_A 874 EVVSTSETIADIQLNSS---NVAA---T--------------------------AAFNKDALLNWLKEYN-SGDDLDRAI 920 (1092)
T ss_dssp ECCTTCCBHHHHHSSSC---TTTT---T--------------------------SCSSTTHHHHHHHHHC-CTHHHHHHH
T ss_pred EECCCCCCHHHHHHHHC---CCHH---H--------------------------HCCCCHHHHHHHHHHC-CHHHHHHHH
T ss_conf 55799745999998635---6202---2--------------------------1048467999999769-888899999
Q ss_pred HHHHHHHHCCCHHHHEECCCCCCCCEEEEECCCCCEEEEECCHHHCCCC-CCC-CCCCCCCCCCCCHHHCCCCC--CCC-
Q ss_conf 9999842000023420314788997078844899199965101000135-789-99888711132034025544--431-
Q 000492 1268 LAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL-MLK-TPERVPFRLTRDIIDGMGVT--GVE- 1342 (1463)
Q Consensus 1268 ~~ft~S~A~~SivgyiLgLGDRH~~NILid~~tG~vvhIDfg~~f~~g~-~l~-~pE~VPFRLTrniv~~mG~~--g~e- 1342 (1463)
.+|++|+|+|||+||||||||||++|||||+ ||+++|||||++|++++ .+. .||+|||||||||+++||+. |.+
T Consensus 921 ~nF~~SlA~ySvv~YILGlGDRH~~NILid~-tG~v~HIDFG~~f~~~~~~l~~~pE~VPFRLT~~mv~~mg~g~~~~s~ 999 (1092)
T 2y3a_A 921 EEFTLSCAGYCVASYVLGIGDRHSDNIMVKK-TGQLFHIDFGHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTE 999 (1092)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCTTTEEECT-TSCEEECCCSCCSSCCCCGGGCCCCCCCCCCCHHHHHHHHTTCSSCSS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC-CCCEEEEEEHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
T ss_conf 9999999999999998117789976378935-787899842334403776688888889804779999997068777775
Q ss_pred --CHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf --01288899999997109699999999971188752125
Q 000492 1343 --GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1380 (1463)
Q Consensus 1343 --G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~ 1380 (1463)
|.|+.+|+.++++||++++.|++++++|++|||.+|..
T Consensus 1000 ~fg~Fr~~c~~a~~~LR~~~~~Il~ll~lml~~~Lp~~~~ 1039 (1092)
T 2y3a_A 1000 KFGRFRQCCEDAYLILRRHGNLFITLFALMLTAGLPELTS 1039 (1092)
T ss_dssp STTHHHHHHHHHHHHHHHTHHHHHHHHHHTSTTCCSSCSS
T ss_pred CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 4225999999999999868899999999994799953353
No 4
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=1.00 E-value=1 Score=532.85 Aligned_cols=414 Identities=17% Similarity=0.248 Sum_probs=303.8
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 999999999833599850678889897974047------------62899999998410036442034147776202787
Q 000492 895 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 962 (1463)
Q Consensus 895 ~~ai~~Yl~sL~~~~~~~~~~~~RllsLWl~~~------------~~~~v~~~~~~~l~~vps~kfl~~lpQL~sRl~~~ 962 (1463)
..|+..+++|+.+++......+..+|.-|-..+ .++.|.....+.+...|.+.++..+|||+..|.+.
T Consensus 439 p~aL~~~l~sv~w~~~~~~~~~~~ll~~W~~~~~~~ALeLL~~~f~d~~Vr~yAv~~L~~~~d~~l~~yL~QLVQaLkyE 518 (940)
T 2wxf_A 439 PEALARLLLVTKWNKHEDVAQMLYLLCSWPELPVLSALELLDFSFPDCYVGSFAIKSLRKLTDDELFQYLLQLVQVLKYE 518 (940)
T ss_dssp GGGHHHHHTTSCTTCHHHHHHHHHHHHTCCCCCHHHHHHHTSTTCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHGGGC
T ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
T ss_conf 16888988014789989999999997057899999999865875899899999999987299899999999999998605
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCC---HHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH----HHH
Q ss_conf 5434524199999999999998378---147878886013661011000132014222499999999999974----577
Q 000492 963 KDALGLHNFQFALVSLVKKMAIDHP---YHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSS----YHG 1035 (1463)
Q Consensus 963 ~~~~~~~~f~~~L~~Ll~~i~~~hP---~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~----~~~ 1035 (1463)
.- ..+.|..+|++.+...| |+.+|.|.+...... .+.|.. .+++.+.. ...
T Consensus 519 ~~------~~s~L~~fLl~ra~~n~~i~h~l~W~l~~e~~~~~----~~~r~~------------~ile~~~~~~~~~~~ 576 (940)
T 2wxf_A 519 SY------LDCELTKFLLGRALANRKIGHFLFWHLRSEMHVPS----VALRFG------------LIMEAYCRGSTHHMK 576 (940)
T ss_dssp SS------SSCHHHHHHHHHHHHCHHHHHHHHHHHHTTTTCHH----HHHHHH------------HHHHHHHHHCHHHHH
T ss_pred CC------CCCHHHHHHHHHHHHCHHHHHHHHHHHEECCCCCH----HHHHHH------------HHHHHHHHHCHHHHH
T ss_conf 44------65589999999987575778999988310316906----999999------------999999842678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCC-CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEE
Q ss_conf 9999999999999998633202---333333444-31333101346655555555689988766678867201125-638
Q 000492 1036 AIIRQMKQMVDVYIKLAELETR---REDTNKRIQ-LPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLA-ESV 1110 (1463)
Q Consensus 1036 ~~~~~~~~l~~~~~~la~~~~~---~~~~~~~~~-l~~~~~~l~~l~~~p~~t~~lp~~~~~~~~~~~~~~i~~f~-~~v 1110 (1463)
.+.+| ..+++.+..++..-.. +....++.. +.+.+......... +...+|.+| ...|.+|. +.+
T Consensus 577 ~l~~q-~~~~~~L~~i~~~ik~~~~~~~r~k~~~~L~~~l~~~~~~~~~--~~~~lP~~P--------~~~I~~~~~~~~ 645 (940)
T 2wxf_A 577 VLMKQ-GEALSKLKALNDFVKVSSQKTTKPQTKEMMHMCMRQETYMEAL--SHLQSPLDP--------STLLEEVCVEQC 645 (940)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHTSHHHHHHH--SSEEETTEE--------EEEECEECGGGC
T ss_pred HHHHH-HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHCC--CCCCCCCCC--------CEEEEEECCCCE
T ss_conf 99999-9999999999999852465331789999999987141123306--898789998--------625777606714
Q ss_pred EEECCCCCCEEEEEEECC---CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCEEEECCCCCCE
Q ss_conf 983388861599998079---95686543228763046689999999999999738112357710002128871899843
Q 000492 1111 MVMNGINAPKVVECFGSD---GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGI 1187 (1463)
Q Consensus 1111 ~v~~s~~~Pk~i~~~gsd---G~~y~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~kR~L~i~tY~ViPLs~~~GL 1187 (1463)
.|++|+++|++|+++|+| |+.|.||+|+| ||+|||+|+||+|++||.+|++++ |+|.+++|+|||+++++||
T Consensus 646 ~V~~S~~~P~~l~~~gsD~~~G~~~~~i~K~g-DDLRqD~rv~Ql~~lmn~il~~~~----~~L~i~~Y~Vipls~~~Gl 720 (940)
T 2wxf_A 646 TFMDSKMKPLWIMYSSEEAGSAGNVGIIFKNG-DDLRQDMLTLQMIQLMDVLWKQEG----LDLRMTPYGCLPTGDRTGL 720 (940)
T ss_dssp EECSSTTCCEEEEEECTTTGGGGCEEEEEEES-SCCHHHHHHHHHHHHHHHHHHHTT----CCCCCCCCCEEEEETTEEE
T ss_pred EECCCCCCCEEEEEEECCCCCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHHHHCC----CCEEEEEEEEEEECCCCCE
T ss_conf 88331128749999834767786323798337-543312899999999999998389----9718995149982377886
Q ss_pred EEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCHHHHHH
Q ss_conf 4772898755887521013899888878885016888762025376899999998623-334899999980895479999
Q 000492 1188 LEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENF-RPVLHYFFLERFLQPAYWFEK 1266 (1463)
Q Consensus 1188 IE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~-~pvl~~~f~~~f~~~~~w~~~ 1266 (1463)
||||+|+.|+++|+.... +... . ..+ .+++++||.+.++ ++.|+.+
T Consensus 721 IE~V~ns~tl~~I~~~~~---~~~~----------------~-------------~~f~~~~l~~~~~~~~~-~~~~~~a 767 (940)
T 2wxf_A 721 IEVVLHSDTIANIQLNKS---NMAA----------------T-------------AAFNKDALLNWLKSKNP-GEALDRA 767 (940)
T ss_dssp EECCSSEEEHHHHHTCCS---SSTT----------------C-------------CSSGGGHHHHHHHHHSC-TTHHHHH
T ss_pred EEECCCCCCHHHHHHHHC---CCHH----------------H-------------HCCCCHHHHHHHHHHCC-HHHHHHH
T ss_conf 867799736999998616---6302----------------2-------------02585569999997598-8889999
Q ss_pred HHHHHHHHHCCCHHHHEECCCCCCCCEEEEECCCCCEEEEECCHHHCCCC-CCCC-CCCCCCCCCCCHHHCCCCC--CCC
Q ss_conf 99999842000023420314788997078844899199965101000135-7899-9888711132034025544--431
Q 000492 1267 RLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL-MLKT-PERVPFRLTRDIIDGMGVT--GVE 1342 (1463)
Q Consensus 1267 R~~ft~S~A~~SivgyiLgLGDRH~~NILid~~tG~vvhIDfg~~f~~g~-~l~~-pE~VPFRLTrniv~~mG~~--g~e 1342 (1463)
|.+|++|+|+|||+||||||||||++|||||+ ||+++|||||++|++++ .+.+ ||+|||||||||+++||+. |.+
T Consensus 768 ~~~F~~S~A~~Svv~YILGlgDRH~~NILid~-tG~v~HIDFG~~f~~~~~~l~~~pE~VPFRLT~~mv~~mg~g~~~~s 846 (940)
T 2wxf_A 768 IEEFTLSCAGYCVATYVLGIGDRHSDNIMIRE-SGQLFHIDFGHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNS 846 (940)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCGGGEEEET-TSCEEECCCCCCTTCC---------CCCCCCCHHHHHHHTTTCSCCH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC-CCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
T ss_conf 99999988999999998006789844379955-88789884133330456656888888981477999999707877777
Q ss_pred ---CHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf ---01288899999997109699999999971188752125
Q 000492 1343 ---GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1380 (1463)
Q Consensus 1343 ---G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~ 1380 (1463)
|.|+.+|+.++++||++++.|++++++|++||+.+|..
T Consensus 847 ~~~g~Fr~~c~~~~~~LR~~~~~ll~ll~lml~~~lp~~~~ 887 (940)
T 2wxf_A 847 EKFERFRGYCERAYTILRRHGLLFLHLFALMRAAGLPELSC 887 (940)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHGGGCCTTSCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 43456999999999999867899999999995799954576
No 5
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=1.00 E-value=1 Score=524.43 Aligned_cols=454 Identities=20% Similarity=0.340 Sum_probs=304.1
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 99999999833599850678889897974047------------628999999984100364420341477762027875
Q 000492 896 LALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTK 963 (1463)
Q Consensus 896 ~ai~~Yl~sL~~~~~~~~~~~~RllsLWl~~~------------~~~~v~~~~~~~l~~vps~kfl~~lpQL~sRl~~~~ 963 (1463)
.|+.-|++|+.+.+......+..+|.-|-..+ .++.|.....+.+...+...++.+++||+.-|.++.
T Consensus 63 ~aL~kfL~sV~W~~~~e~~~a~~LL~~W~~i~~~dALELL~~~f~d~~VR~yAV~~L~~~~D~eL~lYLlQLVQALKyE~ 142 (614)
T 3ls8_A 63 KALTKFLKCVNWDLPQEAKQALELLGKWKPMDVEDSLELLSSHYTNPTVRRYAVARLRQADDEDLLMYLLQLVQALKYEN 142 (614)
T ss_dssp GGHHHHHTTCCTTSHHHHHHHHHHHHHSCCCCHHHHGGGGSTTCCCHHHHHHHHHHHTTSCHHHHHHTHHHHHHHGGGSC
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
T ss_conf 67888852289999899999999985078899889987476668988999999999972896899999998777642033
Q ss_pred CCC--------------------------------------------------------CCCCHHHHHHHHHHHHHHHCC
Q ss_conf 434--------------------------------------------------------524199999999999998378
Q 000492 964 DAL--------------------------------------------------------GLHNFQFALVSLVKKMAIDHP 987 (1463)
Q Consensus 964 ~~~--------------------------------------------------------~~~~f~~~L~~Ll~~i~~~hP 987 (1463)
-.. ......+.|..+|++.+...|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~La~FLi~RAl~n~ 222 (614)
T 3ls8_A 143 FDDIKNGLEPTKKDSQSSVSENVSNSGINSAEIDSSQIITSPLPSVSSPPPASKTKEVPDGENLEQDLCTFLISRACKNS 222 (614)
T ss_dssp HHHHHHTC------------------------CCGGGSTTCCCCC-------------------CCCHHHHHHHHHHTCH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCH
T ss_conf 23211012321112234432223444332222332211123333333455210122222244467838999999873488
Q ss_pred HH---HHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 14---78788860136610110001320142224999999999999745------7799999999999999986332023
Q 000492 988 YH---TIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSY------HGAIIRQMKQMVDVYIKLAELETRR 1058 (1463)
Q Consensus 988 ~~---~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~------~~~~~~~~~~l~~~~~~la~~~~~~ 1058 (1463)
.- .+|.|.+...... .. .+...+.+.-. ...+.++..+... ....+..-..+++.+..++..-. +
T Consensus 223 ~ig~~lyW~L~~E~~~~~-~~---~~~~~~~~~Y~-~vl~~~l~~l~~g~~~~~~~r~~L~~Q~~~~~~L~~l~~~v~-~ 296 (614)
T 3ls8_A 223 TLANYLYWYVIVECEDQD-TQ---QRDPKTHEMYL-NVMRRFSQALLKGDKSVRVMRSLLAAQQTFVDRLVHLMKAVQ-R 296 (614)
T ss_dssp HHHHHHHHHHHHHHHCHH-HH---HHCHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHEEEECCCCC-CC---CCCHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_conf 888777766023235753-22---11227889999-999999999872681468999999999999999999999998-5
Q ss_pred CCCC--CCCC-CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEECCCCCCEEEEEEECCCCEEEE
Q ss_conf 3333--3444-313331013466555555556899887666788672011256-38983388861599998079956865
Q 000492 1059 EDTN--KRIQ-LPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAE-SVMVMNGINAPKVVECFGSDGHKYRQ 1134 (1463)
Q Consensus 1059 ~~~~--~~~~-l~~~~~~l~~l~~~p~~t~~lp~~~~~~~~~~~~~~i~~f~~-~v~v~~s~~~Pk~i~~~gsdG~~y~~ 1134 (1463)
+..+ ++.. +...+.......+..+....+|.+|. ++|.+|.| .+.|++|+++||+|+|+|+||+.|.+
T Consensus 297 ~~~~~~kk~e~L~~~L~~~~~~~l~~~~~~~lPl~P~--------v~I~~i~p~~~~V~~Sk~~P~~l~~~gsDG~~y~~ 368 (614)
T 3ls8_A 297 ESGNRKKKNERLQALLGDNEKMNLSDVELIPLPLEPQ--------VKIRGIIPETATLFKSALMPAQLFFKTEDGGKYPV 368 (614)
T ss_dssp SCSCHHHHHHHHHHHHHCHHHHCCSSCSSEEETTEEE--------EEEEEECGGGCEECSSTTCCEEEEEEETTSCEEEE
T ss_pred HCCCHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCC--------EEEEEEECCEEEEEECCCCEEEEEEECCCCCEEEE
T ss_conf 0243688999999997150010124578878999986--------69999965806885114682799999269988778
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCEEEECCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 43228763046689999999999999738112357710002128871899843477289875588752101389988887
Q 000492 1135 LAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRY 1214 (1463)
Q Consensus 1135 L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~kR~L~i~tY~ViPLs~~~GLIE~v~~t~tl~~il~~~~~~~~~~~~~ 1214 (1463)
++|+| ||+|||+++||+|++||.+|+++. ++|.+++|+|||+++++||||||++ .|+.+++...
T Consensus 369 i~K~g-DDLRQD~~~~Ql~~l~n~il~~~~----ldL~i~~Y~Vipls~~~GlIE~V~~-~tl~~il~~~---------- 432 (614)
T 3ls8_A 369 IFKHG-DDLRQDQLILQIISLMDKLLRKEN----LDLKLTPYKVLATSTKHGFMQFIQS-VPVAEVLDTE---------- 432 (614)
T ss_dssp EEEES-SCCHHHHHHHHHHHHHHHHHHHTT----CCCCCCCCCEEESSSSEEEEECCCC-EEHHHHHHHT----------
T ss_pred EEECC-CCCHHHHHHHHHHHHHHHHHHHCC----CCCEEECCEEEEECCCCCEEEEECC-CCHHHHHHCC----------
T ss_conf 87438-851398999999999999999669----9844541079994598765887178-6589998705----------
Q ss_pred CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHHHHCCCHHHHEECCCCCC
Q ss_conf 8885016888762025376899999998623334899999980895479----999999998420000234203147889
Q 000492 1215 GIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYW----FEKRLAYTRSVAASSMVGYIVGLGDRH 1290 (1463)
Q Consensus 1215 ~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w----~~~R~~ft~S~A~~SivgyiLgLGDRH 1290 (1463)
..+.+||.+.++++..| +++|.+|++|+|+|||+||||||||||
T Consensus 433 --------------------------------~~l~~~f~~~~~~~~~~~~~~~~a~~nF~~S~A~ySvv~YILGigDRH 480 (614)
T 3ls8_A 433 --------------------------------GSIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITYILGVGDRH 480 (614)
T ss_dssp --------------------------------SSHHHHHHHHSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred --------------------------------CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCC
T ss_conf --------------------------------869999998588866654455999999999877776751032346888
Q ss_pred CCEEEEECCCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC--HHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 97078844899199965101000135789998887111320340255444310--1288899999997109699999999
Q 000492 1291 AMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEG--VFRRCCEKTLSVMRTNKEALLTIVE 1368 (1463)
Q Consensus 1291 ~~NILid~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG--~F~~~~~~t~~~Lr~~~~~l~~iL~ 1368 (1463)
++||||| .||+++|||||++|+++ +.||+||||||+||+++||++|+|| .|+.+|+.++.+||++.+.|+++++
T Consensus 481 ~~NILld-~tG~v~HIDFG~~f~~~---p~pe~vPFRLT~~mv~~mG~~~~e~f~~Fr~~c~~~~~~LR~~~~~il~l~~ 556 (614)
T 3ls8_A 481 LDNLLLT-KTGKLFHIDFGYILGRD---PKPLPPPMKLNKEMVEGMGGTQSEQYQEFRKQCYTAFLHLRRYSNLILNLFS 556 (614)
T ss_dssp TTSEEEC-TTSCEEECCCSSCTTCC---SSSSCCSSCCCHHHHHHTTCTTSHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CCCEEEC-CCCCEEEEEHHHHHCCC---CCCCCCCEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 7666673-78988664117765358---8778887434899999839988721889999999999999877789999999
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 97118875212581679754310232212799999200034245999999998510799899866999999999999019
Q 000492 1369 VFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAID 1448 (1463)
Q Consensus 1369 ~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~~v~~KL~g~~~~~~lsv~~qV~~LI~~Atd 1448 (1463)
+|+.+++.+|...+.+ ++..+++++.--.+. --...++..||+++.+
T Consensus 557 lM~~s~lp~~~~~~~~-------------------------------~i~~l~~rf~l~lse--~ea~~~~~~lI~~S~~ 603 (614)
T 3ls8_A 557 LMVDANIPDIALEPDK-------------------------------TVKKVQDKFRLDLSD--EEAVHYMQSLIDESVH 603 (614)
T ss_dssp TTTTSCCHHHHTSGGG-------------------------------HHHHHHHHTTTTSCH--HHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCHHH-------------------------------HHHHHHHHCCCCCCH--HHHHHHHHHHHHHHHH
T ss_conf 9705999744557589-------------------------------999999973899999--9999999999999885
No 6
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=1.00 E-value=1 Score=515.51 Aligned_cols=451 Identities=18% Similarity=0.264 Sum_probs=323.0
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC------------CHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHCCCC
Q ss_conf 999999999833599850678889897974047------------6289999999841-003644203414777620278
Q 000492 895 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTI-DEVQSYKFIPLVYQIASRMGS 961 (1463)
Q Consensus 895 ~~ai~~Yl~sL~~~~~~~~~~~~RllsLWl~~~------------~~~~v~~~~~~~l-~~vps~kfl~~lpQL~sRl~~ 961 (1463)
..|+.-+++|+.+++......+..+|.-|-..+ .++.|.+...+.+ ...|....+..+|||+.-|.+
T Consensus 585 p~aL~k~L~sV~W~~~~e~~e~~~LL~~W~~i~~~~ALeLL~~~f~d~~VR~yAV~~L~~~~~ddeLl~YLlQLVQALKy 664 (1091)
T 3hhm_A 585 PEILPKLLLSVKWNSRDEVAQMYCLVKDWPPIKPEQAMELLDCNYPDPMVRGFAVRCLEKYLTDDKLSQYLIQLVQVLKY 664 (1091)
T ss_dssp GGGHHHHHTTSCTTCHHHHHHHHHHHHTCCCCCHHHHHHTTSTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 16888986327889989999999998557889988999857666899899999999987548889999999999999701
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCH---HHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 754345241999999999999983781---47878886013661011000132014222499999999999974577999
Q 000492 962 TKDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSYHGAII 1038 (1463)
Q Consensus 962 ~~~~~~~~~f~~~L~~Ll~~i~~~hP~---~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 1038 (1463)
.. ...+.|..+|++.+...|. +.+|.|.+...... ...|...++ +.++.........+.
T Consensus 665 E~------~~ds~La~FLl~RAl~n~~igh~lfW~L~~E~~~~~----~~~r~~~lL--------e~~~~~~~~~~~~l~ 726 (1091)
T 3hhm_A 665 EQ------YLDNLLVRFLLKKALTNQRIGHFFFWHLKSEMHNKT----VSQRFGLLL--------ESYCRACGMYLKHLN 726 (1091)
T ss_dssp CS------SSSCHHHHHHHHHHTTCHHHHHHHHHHHHTTTTCTT----THHHHHHHH--------HHHHHHSCTHHHHHH
T ss_pred CC------CCCCHHHHHHHHHHHHCHHHHHHHHHHEEECCCCCH----HHHHHHHHH--------HHHHHHCHHHHHHHH
T ss_conf 43------355489999999986097888888777011025830----789999999--------999851899999999
Q ss_pred HHHHHHHHHHHHHHHHHCCC-CCCCCC--CC-CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEE
Q ss_conf 99999999999986332023-333334--44-313331013466555555556899887666788672011256-38983
Q 000492 1039 RQMKQMVDVYIKLAELETRR-EDTNKR--IQ-LPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAE-SVMVM 1113 (1463)
Q Consensus 1039 ~~~~~l~~~~~~la~~~~~~-~~~~~~--~~-l~~~~~~l~~l~~~p~~t~~lp~~~~~~~~~~~~~~i~~f~~-~v~v~ 1113 (1463)
+|. .+++.+..++..-... .+..++ .. +...+......+.. ....+|.+|. ..|.+|.+ .+.|+
T Consensus 727 rQ~-~~~~~L~~is~~ik~~~~~~~~~~k~~~L~~~L~~~~~~~~~--~~~~lPl~P~--------~~I~~i~~~~~~V~ 795 (1091)
T 3hhm_A 727 RQV-EAMEKLINLTDILKQEKKDETQKVQMKFLVEQMRRPDFMDAL--QGFLSPLNPA--------HQLGNLRLEECRIM 795 (1091)
T ss_dssp HHH-HHHHHHHHHHHHTTSTTCCSCHHHHHHHHHHHHHSHHHHHHS--SSEEETTEEE--------EEECSBCGGGCEEC
T ss_pred HHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHCC--CCCCCCCCCC--------EEEEEEEECEEEEE
T ss_conf 999-999999999999863144433688999999998351101024--6788999950--------08989861547986
Q ss_pred CCCCCCEEEEEEECC--CCEE----EEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCEEEECCCCCCE
Q ss_conf 388861599998079--9568----6543228763046689999999999999738112357710002128871899843
Q 000492 1114 NGINAPKVVECFGSD--GHKY----RQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGI 1187 (1463)
Q Consensus 1114 ~s~~~Pk~i~~~gsd--G~~y----~~L~K~G~dDlRqD~r~~Qlf~l~N~lL~~~~et~kR~L~i~tY~ViPLs~~~GL 1187 (1463)
+|+++|++|+|+|+| |+.| .+++|.| ||+|||+|+||+|++||.+|++++ ++|.+++|.|||+++++||
T Consensus 796 ~S~~~P~~L~f~g~D~~G~~y~~~~~~i~K~g-DDLRQD~~v~Qli~lmn~il~~~~----~dL~l~~Y~Vip~s~~~Gl 870 (1091)
T 3hhm_A 796 SSAKRPLWLNWENPDIMSELLFQNNEIIFKNG-DDLRQDMLTLQIIRIMENIWQNQG----LDLRMLPYGCLSIGDCVGL 870 (1091)
T ss_dssp CSSSCCEEEEECCCSTTSTTTSCCEEEEEEES-SCCHHHHHHHHHHHHHHHHHHTTT----CCCCCCCCCEEEEETTEEE
T ss_pred ECCCCCEEEEEECCCCCCCCCCCCCEEEEECC-CCHHHHHHHHHHHHHHHHHHHHCC----CCCEEEEEEEEECCCCCCC
T ss_conf 21058179999547888761134432799748-633188999999999999998579----9806762269984698764
Q ss_pred EEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 47728987558875210138998888788850168887620253768999999986233348999999808954799999
Q 000492 1188 LEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKR 1267 (1463)
Q Consensus 1188 IE~v~~t~tl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R 1267 (1463)
||||+|++|+++|+.... .... . .| -.+++++||.+.+ ++..|+.+|
T Consensus 871 IE~V~ns~Tl~~I~~~~~----~~~~---~-------------------~f------~~~~L~~~f~~~~-~~~~~~~ar 917 (1091)
T 3hhm_A 871 IEVVRNSHTIMQIQCKGG----LKGA---L-------------------QF------NSHTLHQWLKDKN-KGEIYDAAI 917 (1091)
T ss_dssp EECCSSEEEHHHHHHSCT----TTCT---T-------------------CC------CTTHHHHHHHTTS-CTTSHHHHH
T ss_pred EEECCCCHHHHHHHHHHC----CCCC---C-------------------CC------CCHHHHHHHHHCC-CHHHHHHHH
T ss_conf 345387250999998618----6510---0-------------------24------7467999998608-768999999
Q ss_pred HHHHHHHHCCCHHHHEECCCCCCCCEEEEECCCCCEEEEECCHHHCCCC--CCCCCCCCCCCCCCCHHHCCCC--CCCC-
Q ss_conf 9999842000023420314788997078844899199965101000135--7899988871113203402554--4431-
Q 000492 1268 LAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL--MLKTPERVPFRLTRDIIDGMGV--TGVE- 1342 (1463)
Q Consensus 1268 ~~ft~S~A~~SivgyiLgLGDRH~~NILid~~tG~vvhIDfg~~f~~g~--~l~~pE~VPFRLTrniv~~mG~--~g~e- 1342 (1463)
.+|++|+|+|||+|||||+||||++|||||+ ||+++|||||++|++++ ....||+||||||+||+++||+ .|+|
T Consensus 918 ~nF~~S~A~ysvv~YiLgigDRH~~NILid~-tG~v~HIDFG~~f~~~~~~~~~~~E~vPFrLT~~mv~vmg~G~~~~e~ 996 (1091)
T 3hhm_A 918 DLFTRSCAGYCVATFILGIGDRHNSNIMVKD-DGQLFHIDFGHFLDHKKKKFGYKRERVPFVLTQDFLIVISKGAQECTK 996 (1091)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCTTTEEEET-TSCEEECCCCCCSCC------------CCCCCHHHHHHSSCSSSCCSS
T ss_pred HHHHHHHHHHHHEEEEEEECCCCCCCEEEEC-CCCEEEEEEHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCCCC
T ss_conf 9999976424243788760688876469907-999898702545403876677776788843279999998257777655
Q ss_pred ----CHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf ----0128889999999710969999999997118875212581679754310232212799999200034245999999
Q 000492 1343 ----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALI 1418 (1463)
Q Consensus 1343 ----G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~ 1418 (1463)
|.|+.+|+.++.+||++++.|++++++|+++++.+|...+ .+.
T Consensus 997 s~~fg~Fr~~c~~a~~~LR~~~~~il~LlelM~~s~lp~~~~~~---------------------------------~i~ 1043 (1091)
T 3hhm_A 997 TREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQSFD---------------------------------DIA 1043 (1091)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHGGGSCCTTCSSHH---------------------------------HHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH---------------------------------HHH
T ss_conf 52077899999999999986567899999998069997657657---------------------------------999
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 998510799899866999999999999019
Q 000492 1419 RVKQKLDGYEGGEMRSVHGQVQQLIQDAID 1448 (1463)
Q Consensus 1419 ~v~~KL~g~~~~~~lsv~~qV~~LI~~Atd 1448 (1463)
.+++++.--.+ .--...++..+|.+|..
T Consensus 1044 ~lr~rf~l~ls--eeeA~~~f~~~i~~s~~ 1071 (1091)
T 3hhm_A 1044 YIRKTLALDKT--EQEALEYFMKQMNDARH 1071 (1091)
T ss_dssp HHHHHSCCSSC--HHHHHHHHHHHHHHCCC
T ss_pred HHHHHHCCCCC--HHHHHHHHHHHHHHHHH
T ss_conf 99997489989--99999999999999985
No 7
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=1.00 E-value=1 Score=90.76 Aligned_cols=33 Identities=36% Similarity=0.626 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCC
Q ss_conf 866999999999999019022562073432579
Q 000492 1431 EMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1463 (1463)
Q Consensus 1431 ~~lsv~~qV~~LI~~Atd~~NL~~m~~gW~pwl 1463 (1463)
+.+||++||++||++|||++|||+||+||+||+
T Consensus 1 ~~lsv~~QV~~LI~~At~~~NL~~my~GW~p~w 33 (33)
T 1w1n_A 1 NELDVPEQVDKLIQQATSIERLCQHYIGWCPFW 33 (33)
T ss_dssp CCSCSTHHHHHHHHHHHHHHHHHTTSCSCCTTC
T ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
T ss_conf 998889999999999659899998710003679
No 8
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=27.87 Aligned_cols=66 Identities=14% Similarity=-0.013 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 89999999999980599469999999997311799998862324586999999998699489999999999631
Q 000492 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 752 (1463)
Q Consensus 679 ~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lk~i~~~~ 752 (1463)
....|...+....+.|++..|...+.++...... +..+....+..+...|+...|+.+++.+....
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY--------NLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC--------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 0999999999999846899999999999972955--------37999999999998277779999999998518
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=25.41 Aligned_cols=64 Identities=17% Similarity=0.075 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 999999999998059946999999999731179999886232458699999999869948999999999963
Q 000492 680 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISEN 751 (1463)
Q Consensus 680 ~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~lW~~Ge~~~Ai~~Lk~i~~~ 751 (1463)
...|...+.+....|++..|...+.++..+. |....+....+.++..+|+...|+..++..+..
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLS--------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 7999999999998578999999999998529--------687899999999999868899999999999864
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=24.69 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=8.2
Q ss_pred HHHHHHHHHCCHHHHHHHHH
Q ss_conf 99999996071245532347
Q 000492 337 RVAKSAVICGSYFTSVMYVE 356 (1463)
Q Consensus 337 ~lA~aA~~C~ay~~ALly~E 356 (1463)
.+|....+++-|..|+-+++
T Consensus 31 ~~~~~~~~~g~~~~A~~~~~ 50 (450)
T 2y4t_A 31 ELGKKLLAAGQLADALSQFH 50 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH
T ss_conf 99999998799999999999
Done!