Query 000495
Match_columns 1462
No_of_seqs 211 out of 216
Neff 3.7
Searched_HMMs 29240
Date Tue Mar 26 17:39:19 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000495.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_267-271//hhsearch_pdb/000495hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fl7_A Ephrin receptor; ATP-bi 1.0 1 1 45.4 3.6 36 796-833 265-302 (536)
2 3u3p_A Tumor necrosis factor r 1.0 1 1 35.8 3.3 35 795-830 26-69 (313)
3 2e4u_A Metabotropic glutamate 1.0 1 1 35.2 0.8 40 793-836 484-532 (555)
4 3me4_A Tumor necrosis factor r 1.0 1 1 35.1 3.0 67 791-862 42-119 (216)
5 2uwi_A CRME protein; receptor, 1.0 1 1 34.9 3.2 64 793-862 15-89 (142)
6 1jma_B Herpesvirus entry media 1.0 1 1 34.7 3.4 64 794-862 15-89 (167)
7 4fhq_A Tumor necrosis factor r 1.0 1 1 34.5 2.2 63 795-862 18-91 (134)
8 2hey_R Tumor necrosis factor r 1.0 1 1 34.4 2.2 62 795-862 19-91 (146)
9 3tje_F Tumor necrosis factor r 1.0 1 1 33.9 2.5 63 796-863 45-120 (156)
10 1ext_A Tumor necrosis factor r 1.0 1 1 33.1 2.6 63 795-862 20-94 (162)
No 1
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=1.00 E-value=1 Score=45.41 Aligned_cols=36 Identities=25% Similarity=0.571 Sum_probs=30.0
Q ss_pred CCCCCCCC--CCCCEECCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf 57999765--310013899950023699997721289999
Q 000495 796 KACPRGLY--GVFCEECPVGTFKNVSGSDRALCRNCSSNE 833 (1462)
Q Consensus 796 ~~CP~G~~--G~fC~eCP~GtYKn~~Gs~~~lC~pCp~~~ 833 (1462)
=.|.+||. +--|+.||.|+||...+ ...|.|||.+.
T Consensus 265 C~C~~G~e~~~~~C~aC~~g~~k~~~~--~~~C~~CP~~S 302 (536)
T 3fl7_A 265 CLCQAGYEKVEDACQACSPGFFKFEAS--ESPCLECPEHT 302 (536)
T ss_dssp CEECTTEEEETTEEEECCTTEECCSCC--SSCCEECCSSE
T ss_pred EECCCCCCCCCCEEEECCCCCCCCCCC--CCCCCCCCCCC
T ss_conf 766676446996554258998766678--98500688877
No 2
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=1.00 E-value=1 Score=35.80 Aligned_cols=35 Identities=40% Similarity=0.918 Sum_probs=19.8
Q ss_pred CCCCCCCCC---------CCCCEECCCCCEECCCCCCCCCCCCCC
Q ss_conf 457999765---------310013899950023699997721289
Q 000495 795 GKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCS 830 (1462)
Q Consensus 795 g~~CP~G~~---------G~fC~eCP~GtYKn~~Gs~~~lC~pCp 830 (1462)
=..||+|+| ..-|++||.|+|++... ....|.+|.
T Consensus 26 C~~CpPGtyv~~~Ct~~~dt~C~pCp~GtYt~~~N-~~~~C~~C~ 69 (313)
T 3u3p_A 26 CDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHEN-GIEKCHDCS 69 (313)
T ss_dssp EECBCTTEEEEECCBTTBCCEEEECCTTEECCSCB-CCSSCEECC
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCC-CCCCCCCCC
T ss_conf 88979993266767899997431699985602688-788081446
No 3
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=1.00 E-value=1 Score=35.24 Aligned_cols=40 Identities=18% Similarity=0.457 Sum_probs=29.9
Q ss_pred EECCCCCCCCCC---------CCCEECCCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 974579997653---------10013899950023699997721289999999
Q 000495 793 VTGKACPRGLYG---------VFCEECPVGTFKNVSGSDRALCRNCSSNELPH 836 (1462)
Q Consensus 793 i~g~~CP~G~~G---------~fC~eCP~GtYKn~~Gs~~~lC~pCp~~~lp~ 836 (1462)
+-...||||+.. +-|.+||.|.+. + |...|.+||.++-|+
T Consensus 484 ~CS~~C~pG~rk~~~~g~~CC~~C~~C~~~~~~--t--d~~~C~~Cp~~~wpn 532 (555)
T 2e4u_A 484 QCSDPCAPNEMKNMQPGDVCCWICIPCEPYEYL--V--DEFTCMDCGPGQWPT 532 (555)
T ss_dssp CSSCCCCTTTEEEECCSSSSCCEEEECCTTEEE--E--ETTEEEECCTTEEEC
T ss_pred EECCCCCCCEEEEECCCCEEEEECCCCCCCEEC--C--CCCCCEECCCCCCCC
T ss_conf 317977998055405897368978657775003--7--786644688323769
No 4
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=1.00 E-value=1 Score=35.12 Aligned_cols=67 Identities=13% Similarity=0.276 Sum_probs=39.5
Q ss_pred CEEECCCCCCCCC---------CCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCC--CCCCCCCCCCCCC
Q ss_conf 4497457999765---------3100138999500236999977212899999997311112386--3478899643588
Q 000495 791 GTVTGKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHRALYIPIRGG--VTECPCPYKCVSE 859 (1462)
Q Consensus 791 GTi~g~~CP~G~~---------G~fC~eCP~GtYKn~~Gs~~~lC~pCp~~~lp~ra~yiyvr~G--~~~~~CpY~C~sd 859 (1462)
+..-=+.||||+| ...|++||.|+|....+ ....|++|.. -.....++.++.. ...+.| .|.++
T Consensus 42 ~~~CC~~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n-~~~~C~~C~~--C~~~~~~~~~~~Ct~t~dtvC--~C~~G 116 (216)
T 3me4_A 42 LGRCCSRCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWN-EEDKCLLHKV--CDAGKALVAVDPGNHTAPRRC--ACTAG 116 (216)
T ss_dssp TTEEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSSB-CCSSCEECCC--CCGGGTEEEESTTCSSSCCEE--EECTT
T ss_pred CCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCC-CCCCCCCCCC--CCCCCCEEEEECCCCCCCCCC--CCCCC
T ss_conf 788868999895563568999998203289997625789-8876978888--788757688724778888502--58799
Q ss_pred CCC
Q ss_conf 766
Q 000495 860 RYH 862 (1462)
Q Consensus 860 ky~ 862 (1462)
+|.
T Consensus 117 ~y~ 119 (216)
T 3me4_A 117 YHW 119 (216)
T ss_dssp EEE
T ss_pred EEC
T ss_conf 470
No 5
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=1.00 E-value=1 Score=34.85 Aligned_cols=64 Identities=25% Similarity=0.564 Sum_probs=40.7
Q ss_pred EECCCCCCCCC---------CCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCC--CCCCCCCCCCCCCCC
Q ss_conf 97457999765---------3100138999500236999977212899999997311112386--347889964358876
Q 000495 793 VTGKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHRALYIPIRGG--VTECPCPYKCVSERY 861 (1462)
Q Consensus 793 i~g~~CP~G~~---------G~fC~eCP~GtYKn~~Gs~~~lC~pCp~~~lp~ra~yiyvr~G--~~~~~CpY~C~sdky 861 (1462)
.-=+.||||.| ..-|++||.|+|.+... ....|.+|..-. + ...+.++.. ...+.| .|.+++|
T Consensus 15 ~cC~~CppG~~~~~~C~~~~~t~C~pC~~gty~~~~n-~~~~C~~C~~C~-~--~~~~~~~~Ct~t~dtvC--~C~~G~y 88 (142)
T 2uwi_A 15 KCCKLCKPGTYSDHRCDKYSDTICGHCPSDTFTSIYN-RSPWCHSCRGPC-G--TNRVEVTPCTPTTNRIC--HCDSNSY 88 (142)
T ss_dssp EEEECBCTTEEEEECCCSSCCCEEEECCTTEECCSSB-CCSSCEECCCCC-C--TTEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC-C--CCEEEEECCCCCCCCEE--ECCCCCE
T ss_conf 8887898897467668899897567589997745689-898467876705-6--88567615989879981--1899968
Q ss_pred C
Q ss_conf 6
Q 000495 862 H 862 (1462)
Q Consensus 862 ~ 862 (1462)
.
T Consensus 89 c 89 (142)
T 2uwi_A 89 C 89 (142)
T ss_dssp E
T ss_pred E
T ss_conf 5
No 6
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=1.00 E-value=1 Score=34.72 Aligned_cols=64 Identities=22% Similarity=0.502 Sum_probs=39.5
Q ss_pred ECCCCCCCCC---------CCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCC-CCEECCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 7457999765---------3100138999500236999977212899999997-3111123-863478899643588766
Q 000495 794 TGKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHR-ALYIPIR-GGVTECPCPYKCVSERYH 862 (1462)
Q Consensus 794 ~g~~CP~G~~---------G~fC~eCP~GtYKn~~Gs~~~lC~pCp~~~lp~r-a~yiyvr-~G~~~~~CpY~C~sdky~ 862 (1462)
.=+.||+|+| ...|++||.|+|.+..+ ....|.+|.. -+.. ..++... .....+.| .|.+++|.
T Consensus 15 ~C~~CppG~~~~~~C~~~~~t~C~~Cp~GtY~~~~n-~~~~C~~C~~--C~~~~g~~~~~~Ct~t~~t~C--~C~~G~y~ 89 (167)
T 1jma_B 15 CCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLN-GLSKCLQCQM--CDPAMGLRASRNCSRTENAVC--GCSPGHFC 89 (167)
T ss_dssp CCBCBCTTEEEEECCCSSSCCEEEECCTTEECSSCB-CSSCCEECCC--CCTTTTEEEEECCCSSSCCEE--EECTTEEE
T ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC--CCCCCCEEEECCCCCCCCCCC--CCCCCCEE
T ss_conf 888889998765678999998577298995136667-6763648744--566788688556788888700--38999652
No 7
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Probab=1.00 E-value=1 Score=34.50 Aligned_cols=63 Identities=22% Similarity=0.481 Sum_probs=38.7
Q ss_pred CCCCCCCCC---------CCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCC--CCCCCCCCCCCCCCCC
Q ss_conf 457999765---------3100138999500236999977212899999997311112386--3478899643588766
Q 000495 795 GKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHRALYIPIRGG--VTECPCPYKCVSERYH 862 (1462)
Q Consensus 795 g~~CP~G~~---------G~fC~eCP~GtYKn~~Gs~~~lC~pCp~~~lp~ra~yiyvr~G--~~~~~CpY~C~sdky~ 862 (1462)
=+.||+|++ ...|++||.|+|.+... ....|++|.. -......+.++.. ...+.|. |.+++|-
T Consensus 18 C~~CppG~~~~~~C~~~~~t~C~pC~~gtys~~~n-~~~~C~~C~~--C~~~~g~~~~~~CT~t~dtvC~--C~~G~~c 91 (134)
T 4fhq_A 18 CPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLN-GLSKCLQCQM--CDPAMGLRASRNCSRTENAVCG--CSPGHFC 91 (134)
T ss_dssp EECBCTTEEEEECCC--CCCEEEECCTTEECCSCB-CCSSCEECCC--CCGGGTEEEEECCCSSSCCEEE--ECTTEEE
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCC-CCCCCCCCCC--CCCCCCEEEECCCCCCCCCCCC--CCCCCEE
T ss_conf 87999797754237999998133899987744788-8883867798--8856796786057787895636--9999886
No 8
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=1.00 E-value=1 Score=34.41 Aligned_cols=62 Identities=19% Similarity=0.401 Sum_probs=36.5
Q ss_pred CCCCCCCCC---------CCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCC-CCEECCCC-CCCCCCCCCCCCCCCCC
Q ss_conf 457999765---------3100138999500236999977212899999997-31111238-63478899643588766
Q 000495 795 GKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHR-ALYIPIRG-GVTECPCPYKCVSERYH 862 (1462)
Q Consensus 795 g~~CP~G~~---------G~fC~eCP~GtYKn~~Gs~~~lC~pCp~~~lp~r-a~yiyvr~-G~~~~~CpY~C~sdky~ 862 (1462)
=+.||+|.| ...|++||.|+|.+..+. ..|++|..= +.. ..++...- ....+.| .|.+++|.
T Consensus 19 C~~C~pG~~~~~~Ct~~~~t~C~~C~~gty~~~~~~--~~C~~C~~C--~~~~g~~~~~~Ct~t~dt~C--~C~~G~y~ 91 (146)
T 2hey_R 19 CHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSS--KPCKPCTWC--NLRSGSERKQLCTATQDTVC--RCRAGTQP 91 (146)
T ss_dssp EECBCTTEEEEECCCSSCCCEEEECCTTEECCSCBS--SCCEECCCC--CGGGTEEEEECCBTTBCCEE--EECTTEEE
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCCC--CCCCCCCCC--CCCCCCEEECCCCCCCCCCC--CCCCCEEE
T ss_conf 989898970405578998987554999888788888--748666878--87778367616766778644--47787060
No 9
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=1.00 E-value=1 Score=33.88 Aligned_cols=63 Identities=19% Similarity=0.378 Sum_probs=30.7
Q ss_pred CCCCCCCC----------CCCCEECCCC-CEECCCCCCCCCCCCCCCCCCCCCCCEECCCCC--CCCCCCCCCCCCCCCC
Q ss_conf 57999765----------3100138999-500236999977212899999997311112386--3478899643588766
Q 000495 796 KACPRGLY----------GVFCEECPVG-TFKNVSGSDRALCRNCSSNELPHRALYIPIRGG--VTECPCPYKCVSERYH 862 (1462)
Q Consensus 796 ~~CP~G~~----------G~fC~eCP~G-tYKn~~Gs~~~lC~pCp~~~lp~ra~yiyvr~G--~~~~~CpY~C~sdky~ 862 (1462)
..||||+| ...|++||.| +|..... ....|.+|.. -........++.. ...+.| .|.+++|-
T Consensus 45 ~~CppG~~v~~~Ct~~~~~t~C~pC~~g~ty~~~~n-~~~~C~~C~~--C~~~~g~~~~~~CT~t~dtvC--~C~~G~fc 119 (156)
T 3tje_F 45 KPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAH-FSSKCRRCRL--CDEGHGLEVEINCTRTQNTKC--RCKPNFFC 119 (156)
T ss_dssp SCBCTTEEESSCCCSSSCCCCEEECCTTTEECSSCB-SCSCCEECCC--CCGGGTEEEEECCBTTBCCEE--EECTTEEC
T ss_pred CCCCCCCEECCCCCCCCCCCCCEECCCCCEEECCCC-CCCCCCCCCC--CCCCCCEEEECCCCCCCCCEE--ECCCCCEE
T ss_conf 889989717776889998976503989870403689-8772757887--788844478646647789711--28999876
Q ss_pred C
Q ss_conf 9
Q 000495 863 M 863 (1462)
Q Consensus 863 ~ 863 (1462)
.
T Consensus 120 ~ 120 (156)
T 3tje_F 120 N 120 (156)
T ss_dssp C
T ss_pred C
T ss_conf 8
No 10
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Probab=1.00 E-value=1 Score=33.08 Aligned_cols=63 Identities=24% Similarity=0.539 Sum_probs=35.1
Q ss_pred CCCCCCCCC----------CCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCC--CCCCCCCCCCCCCCCCC
Q ss_conf 457999765----------310013899950023699997721289999999731111238--63478899643588766
Q 000495 795 GKACPRGLY----------GVFCEECPVGTFKNVSGSDRALCRNCSSNELPHRALYIPIRG--GVTECPCPYKCVSERYH 862 (1462)
Q Consensus 795 g~~CP~G~~----------G~fC~eCP~GtYKn~~Gs~~~lC~pCp~~~lp~ra~yiyvr~--G~~~~~CpY~C~sdky~ 862 (1462)
=+.||+|+| ...|++||.|+|.+..+. ...|++|..= ......+.++. ....+.| .|.+++|.
T Consensus 20 C~~CppG~~~~~~Ct~~~~~t~C~~C~~gty~~~~n~-~~~C~~C~~C--~~~~~~~~~~~Ct~t~dt~C--~C~~G~y~ 94 (162)
T 1ext_A 20 CTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENH-LRHCLSCSKC--RKEMGQVEISSCTVDRDTVC--GCRKNQYR 94 (162)
T ss_dssp EECBCTTEEEEECCSSTTSCCEEEECCTTEECCSSBC-CSSCEECCCC--CGGGTCEEEECCBTTBCCEE--ECCTTEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC--CCCCCEEEEECCCCCCCCCC--CCCCCCEE
T ss_conf 9889998604566678888961333989865146677-7755243788--77789788713668888786--59898524
Done!