Query 000496
Match_columns 1462
No_of_seqs 706 out of 4040
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 10:41:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0384 Chromodomain-helicase 100.0 3E-170 6E-175 1562.0 60.7 926 101-1120 184-1172(1373)
2 KOG0385 Chromatin remodeling c 100.0 6E-145 1E-149 1285.2 54.8 766 276-1132 158-957 (971)
3 PLN03142 Probable chromatin-re 100.0 7E-125 2E-129 1208.5 54.8 764 272-1132 157-985 (1033)
4 KOG0386 Chromatin remodeling c 100.0 2.4E-94 5.1E-99 875.2 31.5 506 272-810 381-906 (1157)
5 KOG0389 SNF2 family DNA-depend 100.0 7.4E-92 1.6E-96 837.0 40.8 463 274-760 387-912 (941)
6 KOG0391 SNF2 family DNA-depend 100.0 2.2E-90 4.9E-95 835.0 35.1 472 280-775 610-1428(1958)
7 KOG0383 Predicted helicase [Ge 100.0 3.1E-92 6.6E-97 863.0 18.9 661 5-690 2-696 (696)
8 KOG0388 SNF2 family DNA-depend 100.0 3.7E-89 8.1E-94 797.0 31.9 457 274-759 557-1177(1185)
9 KOG0387 Transcription-coupled 100.0 2.6E-87 5.6E-92 799.7 40.9 487 270-779 191-702 (923)
10 KOG0392 SNF2 family DNA-depend 100.0 8.4E-81 1.8E-85 764.0 39.9 465 284-775 974-1495(1549)
11 KOG0390 DNA repair protein, SN 100.0 1.8E-69 3.8E-74 667.5 41.8 452 284-759 237-730 (776)
12 KOG1015 Transcription regulato 100.0 2.1E-65 4.5E-70 611.1 33.9 470 284-778 667-1320(1567)
13 KOG1002 Nucleotide excision re 100.0 1.3E-63 2.9E-68 566.7 34.0 467 275-773 175-788 (791)
14 KOG4439 RNA polymerase II tran 100.0 2.8E-63 6.1E-68 585.2 34.2 473 272-773 313-898 (901)
15 COG0553 HepA Superfamily II DN 100.0 5.4E-63 1.2E-67 654.0 40.5 472 282-775 335-864 (866)
16 KOG1016 Predicted DNA helicase 100.0 1E-54 2.2E-59 510.9 25.2 469 284-777 253-891 (1387)
17 KOG1000 Chromatin remodeling p 100.0 1E-53 2.2E-58 488.3 32.2 409 285-756 198-623 (689)
18 PRK04914 ATP-dependent helicas 100.0 9.5E-52 2.1E-56 531.7 36.4 416 284-759 151-628 (956)
19 KOG1001 Helicase-like transcri 100.0 5.7E-47 1.2E-51 472.2 24.3 437 288-758 135-672 (674)
20 PF00176 SNF2_N: SNF2 family N 100.0 3.9E-40 8.4E-45 382.4 24.6 272 289-586 1-299 (299)
21 TIGR00603 rad25 DNA repair hel 100.0 1.7E-36 3.6E-41 379.3 36.1 342 283-747 253-618 (732)
22 PRK13766 Hef nuclease; Provisi 100.0 2.1E-32 4.5E-37 358.1 40.4 430 284-753 14-496 (773)
23 KOG0298 DEAD box-containing he 100.0 9.6E-30 2.1E-34 318.6 24.1 256 302-584 372-689 (1394)
24 COG1061 SSL2 DNA or RNA helica 100.0 7.6E-28 1.6E-32 294.3 32.9 362 283-748 34-406 (442)
25 COG1111 MPH1 ERCC4-like helica 100.0 4.5E-27 9.9E-32 274.6 34.1 418 284-752 14-497 (542)
26 PHA02558 uvsW UvsW helicase; P 100.0 5.2E-27 1.1E-31 292.0 33.7 336 283-735 112-454 (501)
27 PF06461 DUF1086: Domain of Un 100.0 3.2E-28 6.9E-33 242.9 13.3 133 936-1069 9-142 (145)
28 PTZ00110 helicase; Provisional 99.9 1.9E-22 4.1E-27 253.2 32.8 319 284-736 151-484 (545)
29 PRK10590 ATP-dependent RNA hel 99.9 5.8E-22 1.3E-26 244.6 30.7 310 284-729 22-347 (456)
30 TIGR00614 recQ_fam ATP-depende 99.9 4.9E-22 1.1E-26 246.1 30.1 309 284-731 10-330 (470)
31 PRK01297 ATP-dependent RNA hel 99.9 1E-21 2.2E-26 243.9 31.9 314 285-735 109-441 (475)
32 PLN00206 DEAD-box ATP-dependen 99.9 9.2E-22 2E-26 246.1 31.7 314 284-735 142-474 (518)
33 KOG0354 DEAD-box like helicase 99.9 5.4E-21 1.2E-25 235.9 37.2 404 284-734 61-527 (746)
34 PRK11776 ATP-dependent RNA hel 99.9 6.5E-22 1.4E-26 244.8 28.6 314 284-736 25-349 (460)
35 PRK11192 ATP-dependent RNA hel 99.9 2.3E-21 5.1E-26 238.1 31.7 313 284-730 22-348 (434)
36 PRK04837 ATP-dependent RNA hel 99.9 1.1E-21 2.4E-26 240.2 28.1 313 285-735 30-361 (423)
37 PRK11634 ATP-dependent RNA hel 99.9 9E-21 1.9E-25 240.4 34.3 310 284-729 27-347 (629)
38 PRK04537 ATP-dependent RNA hel 99.9 4.4E-21 9.5E-26 241.8 31.1 309 284-729 30-359 (572)
39 KOG1123 RNA polymerase II tran 99.9 2E-21 4.3E-26 223.9 19.9 341 282-742 299-659 (776)
40 PRK11057 ATP-dependent DNA hel 99.9 1.4E-20 3E-25 239.4 29.8 305 284-729 24-338 (607)
41 TIGR01389 recQ ATP-dependent D 99.9 2.1E-20 4.5E-25 238.0 31.0 304 284-728 12-325 (591)
42 PTZ00424 helicase 45; Provisio 99.9 2.5E-20 5.5E-25 226.5 30.3 316 284-736 49-374 (401)
43 KOG0331 ATP-dependent RNA heli 99.9 2.6E-20 5.6E-25 224.2 29.0 313 285-729 113-443 (519)
44 PLN03137 ATP-dependent DNA hel 99.9 8.2E-20 1.8E-24 234.4 29.3 311 284-731 459-784 (1195)
45 KOG0330 ATP-dependent RNA heli 99.9 7.1E-20 1.5E-24 207.4 24.0 322 285-746 83-415 (476)
46 PRK11448 hsdR type I restricti 99.8 6.8E-20 1.5E-24 242.6 27.7 357 283-733 411-815 (1123)
47 PF08074 CHDCT2: CHDCT2 (NUC03 99.8 2.9E-21 6.4E-26 195.0 9.3 143 1081-1334 3-145 (173)
48 TIGR00643 recG ATP-dependent D 99.8 6.7E-19 1.5E-23 225.0 33.3 305 284-728 234-560 (630)
49 PRK13767 ATP-dependent helicas 99.8 8E-19 1.7E-23 230.9 33.3 322 284-731 31-395 (876)
50 TIGR03817 DECH_helic helicase/ 99.8 9.8E-19 2.1E-23 226.0 32.8 331 285-744 36-394 (742)
51 PRK10917 ATP-dependent DNA hel 99.8 9.1E-19 2E-23 225.2 32.3 305 284-728 260-583 (681)
52 TIGR00580 mfd transcription-re 99.8 1.7E-18 3.7E-23 225.8 34.3 308 284-735 450-769 (926)
53 PRK10689 transcription-repair 99.8 1.2E-18 2.5E-23 231.8 29.4 302 284-727 599-912 (1147)
54 COG0513 SrmB Superfamily II DN 99.8 3.4E-18 7.4E-23 213.1 30.3 329 284-749 50-392 (513)
55 PRK02362 ski2-like helicase; P 99.8 2.5E-17 5.4E-22 214.6 27.0 317 284-735 22-396 (737)
56 TIGR01587 cas3_core CRISPR-ass 99.8 4.5E-17 9.9E-22 195.2 26.0 328 307-750 2-355 (358)
57 PRK00254 ski2-like helicase; P 99.8 1.9E-16 4.1E-21 205.9 31.9 317 284-737 22-389 (720)
58 PRK01172 ski2-like helicase; P 99.8 7.5E-17 1.6E-21 208.6 26.8 303 284-727 21-369 (674)
59 TIGR00348 hsdR type I site-spe 99.7 2.9E-16 6.4E-21 201.4 29.8 362 284-734 237-649 (667)
60 TIGR03714 secA2 accessory Sec 99.7 2.6E-16 5.6E-21 198.6 27.0 117 606-728 406-531 (762)
61 TIGR02621 cas3_GSU0051 CRISPR- 99.7 1.9E-16 4.1E-21 201.6 25.5 107 621-732 269-390 (844)
62 KOG0328 Predicted ATP-dependen 99.7 2.6E-16 5.7E-21 171.8 19.9 311 288-736 52-373 (400)
63 COG1201 Lhr Lhr-like helicases 99.7 1.1E-15 2.3E-20 193.8 28.5 326 284-746 21-370 (814)
64 KOG0350 DEAD-box ATP-dependent 99.7 2.2E-16 4.7E-21 183.9 20.1 356 285-735 159-539 (620)
65 PRK09200 preprotein translocas 99.7 3.3E-15 7.2E-20 190.3 29.6 131 605-745 409-547 (790)
66 KOG0345 ATP-dependent RNA heli 99.7 3.4E-15 7.4E-20 173.2 26.3 313 284-732 27-362 (567)
67 TIGR00963 secA preprotein tran 99.7 2.1E-16 4.5E-21 198.3 17.2 120 606-730 387-513 (745)
68 COG4096 HsdR Type I site-speci 99.7 1.5E-15 3.2E-20 187.5 23.1 354 282-733 162-545 (875)
69 PRK12898 secA preprotein trans 99.7 2.6E-15 5.5E-20 187.8 25.5 118 606-728 455-580 (656)
70 PHA02653 RNA helicase NPH-II; 99.7 9.3E-15 2E-19 185.4 30.0 324 281-738 156-516 (675)
71 COG0514 RecQ Superfamily II DN 99.7 6.2E-15 1.3E-19 181.1 25.5 305 284-731 16-334 (590)
72 KOG0335 ATP-dependent RNA heli 99.7 4E-15 8.8E-20 176.9 22.6 313 284-731 95-441 (482)
73 PRK09751 putative ATP-dependen 99.7 9E-15 2E-19 195.9 28.5 96 623-721 243-371 (1490)
74 KOG0342 ATP-dependent RNA heli 99.6 3.1E-15 6.8E-20 174.8 18.0 308 284-726 103-429 (543)
75 COG1200 RecG RecG-like helicas 99.6 3.5E-14 7.6E-19 173.9 27.6 305 284-727 261-584 (677)
76 TIGR03158 cas3_cyano CRISPR-as 99.6 4.7E-14 1E-18 169.1 28.2 85 623-719 271-357 (357)
77 KOG0341 DEAD-box protein abstr 99.6 2.4E-15 5.3E-20 169.7 14.8 319 285-742 192-534 (610)
78 KOG0333 U5 snRNP-like RNA heli 99.6 9.8E-15 2.1E-19 170.9 20.2 334 285-729 267-619 (673)
79 PRK09401 reverse gyrase; Revie 99.6 5.1E-14 1.1E-18 188.3 29.3 294 283-722 78-432 (1176)
80 COG4889 Predicted helicase [Ge 99.6 1.6E-14 3.5E-19 175.4 21.4 383 282-725 158-576 (1518)
81 KOG0343 RNA Helicase [RNA proc 99.6 9.1E-14 2E-18 163.4 26.3 325 285-750 91-435 (758)
82 KOG0340 ATP-dependent RNA heli 99.6 7.4E-14 1.6E-18 157.5 24.2 307 285-725 29-352 (442)
83 KOG0348 ATP-dependent RNA heli 99.6 9.8E-14 2.1E-18 162.8 25.5 141 602-749 399-565 (708)
84 COG1205 Distinct helicase fami 99.6 5.6E-14 1.2E-18 182.8 26.0 330 285-745 70-431 (851)
85 cd00079 HELICc Helicase superf 99.6 3.5E-15 7.7E-20 151.4 11.7 120 608-730 12-131 (131)
86 PRK05580 primosome assembly pr 99.6 3.3E-13 7.1E-18 173.6 32.6 153 284-466 143-304 (679)
87 PF04851 ResIII: Type III rest 99.6 6.3E-15 1.4E-19 158.4 13.2 165 284-467 2-183 (184)
88 KOG4284 DEAD box protein [Tran 99.6 3.6E-14 7.7E-19 168.7 19.5 317 286-733 48-377 (980)
89 KOG0338 ATP-dependent RNA heli 99.6 2.9E-14 6.3E-19 166.3 18.1 322 285-745 203-540 (691)
90 KOG0339 ATP-dependent RNA heli 99.6 1.4E-13 3.1E-18 160.3 23.1 319 285-739 245-578 (731)
91 TIGR00595 priA primosomal prot 99.6 4.9E-13 1.1E-17 166.4 26.8 94 637-733 271-380 (505)
92 PRK13104 secA preprotein trans 99.5 7.7E-13 1.7E-17 168.5 27.0 129 606-744 426-592 (896)
93 TIGR01054 rgy reverse gyrase. 99.5 9.1E-13 2E-17 176.7 27.3 131 284-442 77-213 (1171)
94 KOG0336 ATP-dependent RNA heli 99.5 6.1E-13 1.3E-17 151.6 21.2 316 285-736 242-572 (629)
95 KOG0332 ATP-dependent RNA heli 99.5 4.5E-13 9.8E-18 151.9 20.0 335 266-738 87-446 (477)
96 PRK09694 helicase Cas3; Provis 99.5 2E-12 4.4E-17 167.9 28.1 357 283-724 284-665 (878)
97 PRK14701 reverse gyrase; Provi 99.5 1.5E-12 3.3E-17 177.8 27.7 336 284-724 78-446 (1638)
98 TIGR01970 DEAH_box_HrpB ATP-de 99.5 2.8E-12 6.1E-17 166.6 27.1 108 623-736 208-336 (819)
99 PRK12906 secA preprotein trans 99.5 1.3E-12 2.8E-17 165.8 23.1 119 606-729 422-548 (796)
100 COG1202 Superfamily II helicas 99.5 4.9E-13 1.1E-17 157.9 17.8 315 284-736 215-553 (830)
101 PRK12904 preprotein translocas 99.5 2.9E-12 6.4E-17 163.2 25.8 120 606-730 412-569 (830)
102 KOG0347 RNA helicase [RNA proc 99.5 6.1E-13 1.3E-17 156.7 18.0 361 284-757 200-612 (731)
103 COG1204 Superfamily II helicas 99.5 1.2E-12 2.7E-17 168.3 21.8 310 285-725 31-397 (766)
104 KOG0326 ATP-dependent RNA heli 99.5 1.6E-13 3.4E-18 152.5 11.1 302 286-725 108-420 (459)
105 COG4098 comFA Superfamily II D 99.5 5.1E-11 1.1E-15 134.5 29.7 312 281-733 93-413 (441)
106 PRK13107 preprotein translocas 99.5 3.7E-12 8.1E-17 161.8 23.1 120 606-730 431-587 (908)
107 KOG0346 RNA helicase [RNA proc 99.4 6.8E-12 1.5E-16 144.9 22.6 122 607-732 252-408 (569)
108 PF09111 SLIDE: SLIDE; InterP 99.4 4.2E-15 9E-20 148.2 -4.3 100 1024-1132 1-111 (118)
109 PF00271 Helicase_C: Helicase 99.4 2.4E-13 5.3E-18 126.6 7.5 78 642-722 1-78 (78)
110 PRK11664 ATP-dependent RNA hel 99.4 8.8E-12 1.9E-16 162.3 24.0 110 623-738 211-341 (812)
111 smart00487 DEXDc DEAD-like hel 99.4 3.4E-12 7.4E-17 137.5 16.3 156 283-468 6-172 (201)
112 COG1197 Mfd Transcription-repa 99.4 7.2E-11 1.6E-15 152.3 29.4 322 284-753 593-927 (1139)
113 KOG0334 RNA helicase [RNA proc 99.4 8.5E-12 1.8E-16 158.0 19.9 123 607-735 597-719 (997)
114 KOG0344 ATP-dependent RNA heli 99.4 1.5E-11 3.2E-16 147.6 20.7 122 607-735 372-494 (593)
115 cd00046 DEXDc DEAD-like helica 99.4 5.9E-12 1.3E-16 127.7 13.6 136 305-466 1-144 (144)
116 TIGR00631 uvrb excinuclease AB 99.4 2.8E-10 6.2E-15 145.3 31.5 132 607-744 425-563 (655)
117 PRK12900 secA preprotein trans 99.3 1.1E-10 2.4E-15 149.1 24.7 118 606-728 580-705 (1025)
118 KOG0351 ATP-dependent DNA heli 99.3 3.9E-11 8.5E-16 155.7 20.1 314 284-733 263-591 (941)
119 PRK05298 excinuclease ABC subu 99.3 1.6E-09 3.4E-14 139.3 34.1 123 607-735 429-556 (652)
120 smart00490 HELICc helicase sup 99.3 7.7E-12 1.7E-16 116.2 8.7 81 639-722 2-82 (82)
121 KOG0952 DNA/RNA helicase MER3/ 99.3 2.7E-10 5.9E-15 143.2 23.7 310 299-740 121-495 (1230)
122 PRK12899 secA preprotein trans 99.3 1.3E-09 2.8E-14 139.2 28.8 120 606-730 550-677 (970)
123 PF11496 HDA2-3: Class II hist 99.3 7.8E-11 1.7E-15 136.7 16.4 216 532-749 4-258 (297)
124 PRK12326 preprotein translocas 99.3 8.6E-10 1.9E-14 137.8 26.1 120 606-730 409-543 (764)
125 COG1203 CRISPR-associated heli 99.2 6.2E-10 1.3E-14 144.9 23.9 356 284-752 194-568 (733)
126 TIGR01967 DEAH_box_HrpA ATP-de 99.2 6.2E-10 1.3E-14 148.4 24.1 110 623-740 278-408 (1283)
127 PRK11131 ATP-dependent RNA hel 99.2 6.9E-10 1.5E-14 147.4 24.0 109 623-739 285-414 (1294)
128 KOG0327 Translation initiation 99.2 2.2E-10 4.7E-15 131.9 16.1 308 286-736 49-370 (397)
129 cd00268 DEADc DEAD-box helicas 99.1 8E-10 1.7E-14 121.8 16.2 153 285-467 21-185 (203)
130 KOG0337 ATP-dependent RNA heli 99.1 3.7E-10 7.9E-15 130.4 13.6 313 285-736 43-368 (529)
131 PF00270 DEAD: DEAD/DEAH box h 99.1 5.8E-10 1.3E-14 118.7 13.7 155 288-472 2-167 (169)
132 PRK13103 secA preprotein trans 99.1 4.9E-09 1.1E-13 134.1 23.9 122 605-731 430-588 (913)
133 TIGR01407 dinG_rel DnaQ family 99.1 3.1E-09 6.8E-14 141.0 21.8 86 282-368 242-333 (850)
134 KOG0353 ATP-dependent DNA heli 99.1 4.1E-09 8.8E-14 119.4 18.3 297 284-714 93-404 (695)
135 KOG0352 ATP-dependent DNA heli 99.0 2E-08 4.2E-13 116.1 22.3 322 288-732 23-360 (641)
136 PRK12903 secA preprotein trans 99.0 4.4E-08 9.5E-13 124.3 26.0 120 606-730 408-535 (925)
137 COG0556 UvrB Helicase subunit 99.0 3.9E-07 8.5E-12 108.8 30.5 132 613-748 432-571 (663)
138 PF13872 AAA_34: P-loop contai 98.8 4.4E-08 9.5E-13 112.2 14.1 238 276-550 27-302 (303)
139 KOG0951 RNA helicase BRR2, DEA 98.8 2.4E-07 5.2E-12 118.6 21.4 72 648-723 607-689 (1674)
140 KOG1244 Predicted transcriptio 98.8 1.2E-09 2.7E-14 118.9 0.9 62 39-100 269-333 (336)
141 TIGR00596 rad1 DNA repair prot 98.8 2.5E-07 5.5E-12 120.1 20.7 42 605-646 267-317 (814)
142 KOG0947 Cytoplasmic exosomal R 98.7 1.7E-07 3.8E-12 117.3 15.8 161 277-499 289-457 (1248)
143 COG1110 Reverse gyrase [DNA re 98.7 1.7E-06 3.6E-11 110.1 23.5 127 284-440 81-215 (1187)
144 COG1198 PriA Primosomal protei 98.7 2.2E-06 4.7E-11 109.6 24.3 373 284-735 197-604 (730)
145 CHL00122 secA preprotein trans 98.7 1.5E-06 3.3E-11 111.3 22.8 84 606-693 406-490 (870)
146 TIGR00604 rad3 DNA repair heli 98.7 7.5E-07 1.6E-11 116.4 20.5 74 281-354 6-82 (705)
147 PRK12902 secA preprotein trans 98.6 2E-06 4.4E-11 110.0 23.4 85 606-694 421-506 (939)
148 COG0610 Type I site-specific r 98.6 5.6E-07 1.2E-11 119.9 19.4 139 303-470 272-417 (962)
149 PF06465 DUF1087: Domain of Un 98.6 5E-08 1.1E-12 86.4 5.5 44 862-905 20-63 (66)
150 PF00385 Chromo: Chromo (CHRro 98.6 1.8E-08 3.8E-13 87.9 2.0 49 193-241 2-54 (55)
151 PRK12901 secA preprotein trans 98.6 4.8E-06 1E-10 107.6 23.9 120 606-730 610-737 (1112)
152 PRK07246 bifunctional ATP-depe 98.5 9.4E-06 2E-10 107.2 25.5 89 612-706 635-725 (820)
153 KOG4299 PHD Zn-finger protein 98.5 3.4E-08 7.3E-13 120.0 1.6 49 51-99 253-306 (613)
154 COG1199 DinG Rad3-related DNA 98.5 1.1E-05 2.3E-10 105.2 24.3 104 621-729 476-612 (654)
155 COG4581 Superfamily II RNA hel 98.5 3.8E-06 8.2E-11 109.6 19.8 157 282-498 116-282 (1041)
156 PRK08074 bifunctional ATP-depe 98.4 0.00026 5.6E-09 95.4 36.4 90 280-369 252-347 (928)
157 KOG1513 Nuclear helicase MOP-3 98.4 1.5E-05 3.3E-10 98.2 21.6 243 276-554 256-540 (1300)
158 KOG0329 ATP-dependent RNA heli 98.4 8.2E-06 1.8E-10 89.5 16.0 45 681-725 302-346 (387)
159 TIGR03117 cas_csf4 CRISPR-asso 98.3 0.00013 2.8E-09 93.0 27.4 79 290-368 2-87 (636)
160 PRK15483 type III restriction- 98.3 9.2E-06 2E-10 105.9 15.9 143 305-467 60-239 (986)
161 KOG0948 Nuclear exosomal RNA h 98.2 6.4E-06 1.4E-10 101.4 12.5 152 284-498 128-288 (1041)
162 PF02399 Herpes_ori_bp: Origin 98.2 9E-05 2E-09 94.5 22.5 114 607-731 266-385 (824)
163 KOG0949 Predicted helicase, DE 98.2 0.00027 5.8E-09 89.8 26.0 161 286-479 512-682 (1330)
164 cd00024 CHROMO Chromatin organ 98.2 9.9E-07 2.2E-11 76.6 2.7 48 194-241 5-54 (55)
165 KOG0825 PHD Zn-finger protein 98.1 1.1E-06 2.3E-11 107.5 2.2 47 51-97 215-265 (1134)
166 PRK11747 dinG ATP-dependent DN 98.1 0.00025 5.5E-09 92.6 23.8 92 611-706 521-616 (697)
167 PF07652 Flavi_DEAD: Flaviviru 98.0 3.2E-05 6.9E-10 80.1 10.8 130 302-466 2-136 (148)
168 COG0653 SecA Preprotein transl 98.0 0.00067 1.5E-08 87.3 24.7 121 606-732 411-542 (822)
169 KOG0920 ATP-dependent RNA heli 98.0 0.0004 8.6E-09 90.4 22.9 128 609-742 396-550 (924)
170 KOG0922 DEAH-box RNA helicase 98.0 0.00039 8.5E-09 86.3 21.7 108 626-738 260-392 (674)
171 smart00488 DEXDc2 DEAD-like he 98.0 4.5E-05 9.7E-10 89.3 12.7 72 284-355 7-84 (289)
172 smart00489 DEXDc3 DEAD-like he 98.0 4.5E-05 9.7E-10 89.3 12.7 72 284-355 7-84 (289)
173 smart00298 CHROMO Chromatin or 97.9 4.6E-06 1E-10 72.3 2.5 48 194-241 4-52 (55)
174 PF00628 PHD: PHD-finger; Int 97.9 2.9E-06 6.3E-11 72.7 0.9 44 53-96 1-49 (51)
175 KOG0924 mRNA splicing factor A 97.9 0.00036 7.8E-09 85.7 18.6 94 648-744 597-705 (1042)
176 KOG0950 DNA polymerase theta/e 97.8 0.0003 6.6E-09 89.9 16.7 153 285-469 223-390 (1008)
177 PF13871 Helicase_C_4: Helicas 97.8 4.4E-05 9.6E-10 87.6 8.0 90 665-757 52-149 (278)
178 KOG0349 Putative DEAD-box RNA 97.8 5.3E-05 1.2E-09 88.3 8.5 95 624-721 505-602 (725)
179 COG1643 HrpA HrpA-like helicas 97.8 0.00093 2E-08 87.3 20.8 113 624-739 259-390 (845)
180 cd04718 BAH_plant_2 BAH, or Br 97.7 2.8E-05 6E-10 80.4 4.2 28 72-99 1-28 (148)
181 smart00249 PHD PHD zinc finger 97.7 2.6E-05 5.6E-10 64.9 3.1 43 53-95 1-47 (47)
182 TIGR02562 cas3_yersinia CRISPR 97.7 0.017 3.7E-07 76.2 29.8 188 287-474 410-642 (1110)
183 KOG1512 PHD Zn-finger protein 97.7 1.6E-05 3.6E-10 87.7 2.1 57 38-96 301-361 (381)
184 PF00385 Chromo: Chromo (CHRro 97.5 1E-05 2.2E-10 70.5 -1.7 54 101-173 2-55 (55)
185 KOG0957 PHD finger protein [Ge 97.5 2.8E-05 6.1E-10 91.4 1.3 49 48-96 541-596 (707)
186 PF13086 AAA_11: AAA domain; P 97.5 0.00065 1.4E-08 75.8 12.1 66 285-354 1-75 (236)
187 KOG0953 Mitochondrial RNA heli 97.4 0.00058 1.3E-08 82.7 9.3 100 622-725 356-465 (700)
188 cd00024 CHROMO Chromatin organ 97.3 6.9E-05 1.5E-09 65.0 1.1 51 101-172 4-54 (55)
189 COG5034 TNG2 Chromatin remodel 97.3 0.0001 2.2E-09 81.3 2.4 47 48-97 218-269 (271)
190 KOG0923 mRNA splicing factor A 97.3 0.0076 1.6E-07 74.6 18.4 84 649-740 507-610 (902)
191 KOG1973 Chromatin remodeling p 97.3 0.0001 2.3E-09 85.3 1.8 45 51-97 219-267 (274)
192 PF07517 SecA_DEAD: SecA DEAD- 97.2 0.0043 9.2E-08 71.6 13.6 122 283-440 75-209 (266)
193 KOG4443 Putative transcription 97.2 0.00018 3.9E-09 88.3 2.4 52 45-96 62-116 (694)
194 KOG0955 PHD finger protein BR1 97.0 0.00042 9.2E-09 91.2 4.0 64 49-117 217-285 (1051)
195 KOG0925 mRNA splicing factor A 97.0 0.018 3.8E-07 69.3 16.3 62 679-742 315-393 (699)
196 KOG1473 Nucleosome remodeling 96.9 0.00044 9.5E-09 88.7 2.3 47 51-97 344-390 (1414)
197 KOG0954 PHD finger protein [Ge 96.8 0.00056 1.2E-08 84.6 2.2 87 50-156 270-362 (893)
198 KOG1245 Chromatin remodeling c 96.8 0.00032 7E-09 95.8 -0.2 52 48-99 1105-1159(1404)
199 COG5141 PHD zinc finger-contai 96.8 0.00066 1.4E-08 80.3 2.2 72 41-117 183-259 (669)
200 KOG0926 DEAH-box RNA helicase 96.6 0.0042 9.1E-08 78.0 8.1 65 668-735 621-703 (1172)
201 COG3587 Restriction endonuclea 96.6 0.0077 1.7E-07 76.7 10.2 45 678-722 484-528 (985)
202 PRK10536 hypothetical protein; 96.5 0.016 3.6E-07 66.2 11.5 150 286-470 60-216 (262)
203 KOG4150 Predicted ATP-dependen 96.5 0.01 2.2E-07 71.9 10.1 133 606-743 507-647 (1034)
204 PF02562 PhoH: PhoH-like prote 96.5 0.019 4.1E-07 63.8 11.5 149 286-471 5-160 (205)
205 KOG0956 PHD finger protein AF1 96.4 0.0011 2.3E-08 81.4 1.3 84 53-154 7-98 (900)
206 KOG2748 Uncharacterized conser 96.2 0.0012 2.6E-08 75.9 0.2 25 131-155 26-50 (369)
207 KOG1911 Heterochromatin-associ 96.2 0.0049 1.1E-07 71.6 4.7 57 190-246 47-103 (270)
208 PF13401 AAA_22: AAA domain; P 96.0 0.0071 1.5E-07 61.6 4.3 35 430-466 89-125 (131)
209 KOG1131 RNA polymerase II tran 95.9 0.015 3.3E-07 70.2 7.2 66 277-342 8-75 (755)
210 KOG4323 Polycomb-like PHD Zn-f 95.9 0.0029 6.2E-08 76.7 0.9 51 52-102 169-228 (464)
211 PF13307 Helicase_C_2: Helicas 95.8 0.015 3.3E-07 62.6 6.4 81 621-706 6-92 (167)
212 smart00298 CHROMO Chromatin or 95.8 0.0039 8.5E-08 53.9 1.5 36 131-173 18-53 (55)
213 COG0553 HepA Superfamily II DN 95.8 0.0054 1.2E-07 82.5 3.1 179 285-488 84-289 (866)
214 PF13604 AAA_30: AAA domain; P 95.6 0.11 2.4E-06 57.6 12.1 58 285-345 1-58 (196)
215 PRK14873 primosome assembly pr 95.6 0.056 1.2E-06 70.2 11.0 125 313-466 169-303 (665)
216 KOG1802 RNA helicase nonsense 95.5 0.021 4.6E-07 70.8 6.5 77 284-366 409-486 (935)
217 PF09848 DUF2075: Uncharacteri 95.4 0.048 1E-06 66.0 9.3 45 307-351 4-49 (352)
218 KOG2748 Uncharacterized conser 95.3 0.014 3.1E-07 67.4 3.7 49 193-242 12-60 (369)
219 TIGR00376 DNA helicase, putati 95.1 0.084 1.8E-06 68.6 10.5 76 284-365 156-232 (637)
220 KOG1803 DNA helicase [Replicat 94.4 0.068 1.5E-06 66.5 6.6 64 284-351 184-248 (649)
221 TIGR01448 recD_rel helicase, p 94.3 0.3 6.4E-06 64.6 12.6 65 283-351 321-386 (720)
222 cd00009 AAA The AAA+ (ATPases 94.0 0.39 8.6E-06 48.6 10.5 42 304-346 19-60 (151)
223 PF12340 DUF3638: Protein of u 94.0 0.14 2.9E-06 57.8 7.4 74 282-356 20-93 (229)
224 KOG1132 Helicase of the DEAD s 93.6 0.5 1.1E-05 61.3 12.1 81 284-364 20-142 (945)
225 TIGR01447 recD exodeoxyribonuc 93.3 0.36 7.8E-06 62.2 10.5 55 288-346 148-206 (586)
226 KOG0951 RNA helicase BRR2, DEA 93.2 0.088 1.9E-06 69.7 4.8 110 301-445 1156-1270(1674)
227 PLN03025 replication factor C 93.0 0.82 1.8E-05 54.6 12.4 27 305-331 35-61 (319)
228 KOG1805 DNA replication helica 92.9 2.5 5.5E-05 55.7 16.8 162 285-469 669-832 (1100)
229 PF13831 PHD_2: PHD-finger; PD 92.8 0.024 5.3E-07 45.2 -0.6 33 62-96 3-36 (36)
230 PRK07003 DNA polymerase III su 92.5 1.1 2.4E-05 58.4 13.0 42 290-331 21-65 (830)
231 COG3421 Uncharacterized protei 92.4 0.11 2.3E-06 64.4 3.7 37 310-346 3-40 (812)
232 PF00249 Myb_DNA-binding: Myb- 92.3 0.12 2.5E-06 43.9 2.9 28 1082-1109 2-29 (48)
233 PRK04296 thymidine kinase; Pro 92.1 0.3 6.5E-06 53.9 6.7 34 307-341 5-38 (190)
234 PRK10875 recD exonuclease V su 92.0 0.62 1.4E-05 60.2 10.2 58 286-347 153-213 (615)
235 TIGR02639 ClpA ATP-dependent C 91.9 58 0.0013 43.7 28.9 29 303-331 202-230 (731)
236 PRK06526 transposase; Provisio 91.7 0.77 1.7E-05 53.1 9.6 53 292-353 90-142 (254)
237 PRK12402 replication factor C 91.4 0.8 1.7E-05 54.6 9.8 40 293-332 23-64 (337)
238 TIGR02881 spore_V_K stage V sp 91.4 0.44 9.6E-06 55.1 7.3 28 304-331 42-69 (261)
239 PRK12723 flagellar biosynthesi 91.2 1.6 3.4E-05 53.6 11.9 55 428-482 254-313 (388)
240 KOG1133 Helicase of the DEAD s 91.0 11 0.00023 48.5 18.8 82 625-707 630-721 (821)
241 smart00717 SANT SANT SWI3, AD 91.0 0.24 5.2E-06 41.0 3.4 29 1082-1110 2-30 (49)
242 PRK07764 DNA polymerase III su 90.8 6.1 0.00013 53.1 17.7 25 307-331 40-64 (824)
243 PRK14956 DNA polymerase III su 90.7 0.7 1.5E-05 57.7 8.4 42 290-331 23-67 (484)
244 PRK09112 DNA polymerase III su 90.6 0.89 1.9E-05 55.0 9.1 42 290-331 28-72 (351)
245 smart00492 HELICc3 helicase su 90.6 1.4 3E-05 46.4 9.3 46 659-706 32-79 (141)
246 cd00167 SANT 'SWI3, ADA2, N-Co 90.6 0.25 5.5E-06 40.2 3.1 29 1083-1111 1-29 (45)
247 smart00382 AAA ATPases associa 89.9 0.7 1.5E-05 46.2 6.4 44 304-348 2-45 (148)
248 KOG0383 Predicted helicase [Ge 89.9 0.12 2.6E-06 66.4 1.0 71 50-152 176-246 (696)
249 smart00491 HELICc2 helicase su 89.3 1.5 3.2E-05 46.2 8.4 54 652-706 23-80 (142)
250 PRK08181 transposase; Validate 89.3 3.3 7.1E-05 48.4 12.0 53 286-339 88-140 (269)
251 KOG4299 PHD Zn-finger protein 88.6 0.24 5.2E-06 61.9 2.2 47 51-97 47-94 (613)
252 TIGR03420 DnaA_homol_Hda DnaA 88.5 2.4 5.2E-05 47.6 10.0 44 303-348 37-80 (226)
253 PRK12323 DNA polymerase III su 88.5 2 4.4E-05 55.4 10.2 25 306-330 40-64 (700)
254 COG1875 NYN ribonuclease and A 88.4 1.4 3.1E-05 52.4 8.2 69 272-342 214-285 (436)
255 KOG4443 Putative transcription 88.4 0.15 3.3E-06 63.7 0.3 59 50-108 17-86 (694)
256 PRK05703 flhF flagellar biosyn 88.2 3.4 7.4E-05 51.4 11.9 56 428-483 299-359 (424)
257 PHA02533 17 large terminase pr 88.2 3 6.5E-05 53.3 11.6 55 284-342 58-113 (534)
258 PF06862 DUF1253: Protein of u 88.1 5.3 0.00011 49.6 13.2 126 608-735 281-414 (442)
259 TIGR03015 pepcterm_ATPase puta 88.0 2.5 5.5E-05 48.7 10.1 42 288-329 26-68 (269)
260 PF05876 Terminase_GpA: Phage 87.9 0.72 1.6E-05 59.2 5.9 166 284-476 15-189 (557)
261 PRK07994 DNA polymerase III su 87.6 2.7 5.8E-05 54.7 10.7 42 290-331 21-65 (647)
262 PF15446 zf-PHD-like: PHD/FYVE 87.4 0.41 8.9E-06 50.7 2.7 34 63-96 124-175 (175)
263 TIGR02880 cbbX_cfxQ probable R 87.1 0.94 2E-05 53.3 5.8 38 304-341 58-98 (284)
264 PRK14960 DNA polymerase III su 86.9 5.7 0.00012 51.6 12.8 25 306-330 39-63 (702)
265 PRK00440 rfc replication facto 86.3 6.2 0.00013 46.6 12.3 27 305-331 39-65 (319)
266 CHL00181 cbbX CbbX; Provisiona 86.3 1.2 2.6E-05 52.4 6.2 42 304-345 59-103 (287)
267 PRK14949 DNA polymerase III su 86.2 2.3 5.1E-05 56.5 9.2 40 292-331 23-65 (944)
268 PRK08691 DNA polymerase III su 86.2 5.9 0.00013 51.7 12.6 40 292-331 23-65 (709)
269 KOG0457 Histone acetyltransfer 86.1 0.53 1.1E-05 56.6 3.0 32 1081-1112 72-103 (438)
270 PRK14958 DNA polymerase III su 85.9 10 0.00022 48.4 14.4 40 292-331 23-65 (509)
271 PRK08084 DNA replication initi 84.7 5.4 0.00012 45.5 10.3 28 304-331 45-72 (235)
272 PRK08116 hypothetical protein; 84.6 8.1 0.00018 45.1 11.9 45 304-349 114-158 (268)
273 PRK14961 DNA polymerase III su 84.6 4 8.7E-05 49.7 9.7 41 290-330 21-64 (363)
274 PF00249 Myb_DNA-binding: Myb- 84.4 1.9 4E-05 36.5 4.8 42 969-1012 4-46 (48)
275 cd00167 SANT 'SWI3, ADA2, N-Co 84.1 2.4 5.1E-05 34.4 5.2 42 969-1012 2-43 (45)
276 PRK07940 DNA polymerase III su 84.0 3.6 7.9E-05 50.6 9.0 26 306-331 38-63 (394)
277 PRK14974 cell division protein 83.7 6.6 0.00014 47.3 10.8 46 306-352 142-191 (336)
278 PHA02544 44 clamp loader, smal 83.6 6.6 0.00014 46.6 10.9 39 429-467 101-141 (316)
279 PRK06645 DNA polymerase III su 83.5 3.6 7.8E-05 52.2 8.9 42 290-331 26-70 (507)
280 PRK14955 DNA polymerase III su 83.3 7 0.00015 48.3 11.2 42 290-331 21-65 (397)
281 PRK08727 hypothetical protein; 82.8 5.4 0.00012 45.4 9.3 27 306-332 43-69 (233)
282 TIGR02768 TraA_Ti Ti-type conj 82.6 9.7 0.00021 50.9 12.7 60 283-346 350-409 (744)
283 PRK05707 DNA polymerase III su 82.5 3.6 7.8E-05 49.4 8.0 47 285-331 3-49 (328)
284 TIGR02928 orc1/cdc6 family rep 82.2 4.6 9.9E-05 48.9 8.9 45 286-330 19-66 (365)
285 COG1200 RecG RecG-like helicas 81.9 17 0.00037 47.0 13.8 96 606-704 293-393 (677)
286 PRK09111 DNA polymerase III su 81.8 5.2 0.00011 51.9 9.6 42 290-331 29-73 (598)
287 smart00717 SANT SANT SWI3, AD 81.7 2.9 6.2E-05 34.4 4.9 45 968-1014 3-47 (49)
288 PF13245 AAA_19: Part of AAA d 81.4 4 8.6E-05 38.3 6.2 44 304-347 10-56 (76)
289 PRK14950 DNA polymerase III su 81.3 7.9 0.00017 50.3 11.0 41 290-330 21-64 (585)
290 PF13173 AAA_14: AAA domain 81.3 7.8 0.00017 39.7 9.0 26 304-329 2-27 (128)
291 PRK11889 flhF flagellar biosyn 81.2 10 0.00023 46.5 11.1 44 305-349 242-289 (436)
292 PRK14957 DNA polymerase III su 81.2 6.2 0.00014 50.5 9.8 39 292-330 23-64 (546)
293 PRK08451 DNA polymerase III su 81.2 7.3 0.00016 49.7 10.4 39 293-331 22-63 (535)
294 TIGR00595 priA primosomal prot 81.0 9.5 0.00021 48.6 11.4 96 605-704 6-102 (505)
295 PRK14962 DNA polymerase III su 80.8 5.6 0.00012 50.2 9.2 25 307-331 39-63 (472)
296 PRK08769 DNA polymerase III su 80.7 10 0.00022 45.4 10.9 48 285-332 4-54 (319)
297 PRK07471 DNA polymerase III su 80.5 7.8 0.00017 47.3 10.0 43 290-332 24-69 (365)
298 PRK00149 dnaA chromosomal repl 80.4 11 0.00024 47.3 11.6 44 305-348 149-193 (450)
299 PF13921 Myb_DNA-bind_6: Myb-l 80.3 1.5 3.3E-05 38.7 2.9 26 1084-1110 1-26 (60)
300 KOG0989 Replication factor C, 80.1 8.6 0.00019 45.2 9.4 43 289-331 40-84 (346)
301 PF13177 DNA_pol3_delta2: DNA 79.8 7.6 0.00017 41.7 8.6 44 290-333 2-48 (162)
302 KOG0957 PHD finger protein [Ge 79.7 1.7 3.6E-05 52.7 3.7 65 49-117 117-194 (707)
303 PF00448 SRP54: SRP54-type pro 79.2 5.8 0.00013 44.1 7.7 34 307-341 4-37 (196)
304 PRK14952 DNA polymerase III su 79.0 9.4 0.0002 49.4 10.5 42 290-331 18-62 (584)
305 PRK14964 DNA polymerase III su 78.9 11 0.00023 47.9 10.6 38 293-330 21-61 (491)
306 TIGR00362 DnaA chromosomal rep 78.5 8.7 0.00019 47.5 9.8 35 306-340 138-173 (405)
307 PF06733 DEAD_2: DEAD_2; Inte 78.4 1.6 3.4E-05 47.4 2.9 38 405-442 118-159 (174)
308 PRK05580 primosome assembly pr 78.3 14 0.00029 49.0 11.9 95 606-704 172-267 (679)
309 PRK13889 conjugal transfer rel 78.2 10 0.00022 51.9 10.8 60 283-346 344-403 (988)
310 PRK14087 dnaA chromosomal repl 77.9 12 0.00026 47.1 10.8 48 305-352 142-190 (450)
311 KOG1246 DNA-binding protein ju 77.8 1.6 3.4E-05 59.5 3.2 49 50-98 154-204 (904)
312 PF15446 zf-PHD-like: PHD/FYVE 77.4 1.1 2.4E-05 47.6 1.3 47 53-99 1-61 (175)
313 PF00580 UvrD-helicase: UvrD/R 77.3 7.3 0.00016 45.6 8.3 54 286-345 1-57 (315)
314 PHA03372 DNA packaging termina 77.2 6.8 0.00015 49.9 8.1 129 303-465 202-336 (668)
315 PRK14948 DNA polymerase III su 77.1 9.8 0.00021 49.7 10.0 42 290-331 21-65 (620)
316 PRK14959 DNA polymerase III su 76.8 38 0.00082 44.2 14.8 37 294-330 25-64 (624)
317 PHA03333 putative ATPase subun 76.5 21 0.00046 46.4 12.3 54 288-342 172-225 (752)
318 TIGR01557 myb_SHAQKYF myb-like 76.3 3.1 6.7E-05 36.9 3.5 28 1081-1108 3-33 (57)
319 PRK14963 DNA polymerase III su 76.2 11 0.00025 47.9 10.0 42 290-331 19-63 (504)
320 PHA03368 DNA packaging termina 75.8 36 0.00078 44.3 13.9 108 303-442 253-366 (738)
321 PRK14951 DNA polymerase III su 75.8 11 0.00023 49.2 9.6 42 290-331 21-65 (618)
322 PF01695 IstB_IS21: IstB-like 75.7 5.1 0.00011 43.8 5.9 42 302-344 45-86 (178)
323 PF05621 TniB: Bacterial TniB 75.6 14 0.0003 43.7 9.6 45 422-466 139-189 (302)
324 COG1198 PriA Primosomal protei 75.1 13 0.00028 49.0 10.3 111 536-687 195-306 (730)
325 cd01121 Sms Sms (bacterial rad 75.1 13 0.00027 45.6 9.6 50 302-352 80-129 (372)
326 PRK06647 DNA polymerase III su 75.1 11 0.00024 48.6 9.6 25 307-331 41-65 (563)
327 COG1484 DnaC DNA replication p 74.6 12 0.00025 43.5 8.8 67 286-353 87-153 (254)
328 PRK11054 helD DNA helicase IV; 74.4 16 0.00034 48.4 10.9 77 284-366 195-277 (684)
329 PRK06893 DNA replication initi 74.4 20 0.00043 40.8 10.5 27 306-332 41-67 (229)
330 PRK14088 dnaA chromosomal repl 74.3 18 0.0004 45.3 11.0 37 305-341 131-168 (440)
331 KOG1512 PHD Zn-finger protein 74.3 0.92 2E-05 51.3 -0.3 46 51-96 258-315 (381)
332 PRK08058 DNA polymerase III su 74.3 13 0.00029 44.6 9.5 43 289-331 10-55 (329)
333 PRK06871 DNA polymerase III su 74.0 13 0.00027 44.8 9.1 47 286-332 3-52 (325)
334 PF14446 Prok-RING_1: Prokaryo 73.9 2.1 4.6E-05 37.3 1.8 30 51-80 5-38 (54)
335 PRK14722 flhF flagellar biosyn 73.6 38 0.00082 41.5 13.1 41 302-342 135-176 (374)
336 PRK04132 replication factor C 73.5 9.5 0.00021 51.2 8.6 49 428-476 630-679 (846)
337 PF12861 zf-Apc11: Anaphase-pr 72.2 1.4 3.1E-05 42.0 0.5 43 54-98 35-80 (85)
338 PRK14086 dnaA chromosomal repl 72.0 20 0.00043 46.5 10.6 46 306-351 316-362 (617)
339 PRK07133 DNA polymerase III su 71.6 15 0.00032 48.5 9.5 39 293-331 26-67 (725)
340 PRK14953 DNA polymerase III su 71.3 17 0.00037 46.1 9.8 41 290-330 21-64 (486)
341 PRK05563 DNA polymerase III su 70.9 18 0.00039 46.7 10.1 25 307-331 41-65 (559)
342 PRK14969 DNA polymerase III su 70.4 27 0.00058 44.9 11.4 24 307-330 41-64 (527)
343 PRK05642 DNA replication initi 70.4 19 0.00042 41.1 9.2 35 305-340 46-80 (234)
344 KOG3612 PHD Zn-finger protein 70.2 3 6.5E-05 51.6 2.6 50 49-98 58-108 (588)
345 COG3973 Superfamily I DNA and 69.8 8.5 0.00018 48.7 6.4 61 286-351 213-278 (747)
346 PRK04195 replication factor C 69.4 31 0.00068 43.7 11.7 42 286-328 18-63 (482)
347 PRK14965 DNA polymerase III su 69.2 35 0.00075 44.4 12.1 25 307-331 41-65 (576)
348 PRK10917 ATP-dependent DNA hel 69.1 24 0.00053 46.7 11.0 97 606-705 292-393 (681)
349 TIGR03345 VI_ClpV1 type VI sec 69.0 16 0.00035 49.5 9.4 41 290-330 192-234 (852)
350 PRK00771 signal recognition pa 68.9 16 0.00035 45.6 8.7 37 305-341 96-132 (437)
351 COG3267 ExeA Type II secretory 68.5 17 0.00038 41.8 8.0 52 301-354 47-105 (269)
352 KOG1911 Heterochromatin-associ 68.5 2.1 4.5E-05 50.0 0.9 21 131-151 64-84 (270)
353 PRK12422 chromosomal replicati 68.2 20 0.00043 45.0 9.4 37 305-342 142-178 (445)
354 PRK06964 DNA polymerase III su 68.1 17 0.00037 44.0 8.4 47 286-332 2-49 (342)
355 CHL00095 clpC Clp protease ATP 67.6 1.8E+02 0.0038 39.7 18.8 25 307-331 542-566 (821)
356 KOG1473 Nucleosome remodeling 67.5 1.2 2.6E-05 58.8 -1.4 51 49-99 426-480 (1414)
357 PRK00411 cdc6 cell division co 65.9 23 0.0005 43.4 9.3 46 287-332 35-83 (394)
358 PRK05896 DNA polymerase III su 65.5 35 0.00077 44.2 10.9 39 293-331 24-65 (605)
359 PRK10865 protein disaggregatio 65.4 22 0.00049 48.3 9.7 37 294-330 187-225 (857)
360 PRK14954 DNA polymerase III su 65.2 21 0.00046 46.6 9.0 42 290-331 21-65 (620)
361 PRK06090 DNA polymerase III su 64.9 30 0.00064 41.6 9.5 48 285-332 3-53 (319)
362 PRK07993 DNA polymerase III su 64.4 19 0.00042 43.4 8.0 47 285-331 2-51 (334)
363 PLN03212 Transcription repress 63.9 7 0.00015 44.4 3.8 51 1081-1134 25-75 (249)
364 COG0470 HolB ATPase involved i 63.8 18 0.00038 42.8 7.6 30 303-332 22-52 (325)
365 PRK12727 flagellar biosynthesi 63.7 57 0.0012 41.8 12.0 38 303-340 349-387 (559)
366 PRK06731 flhF flagellar biosyn 63.7 49 0.0011 38.8 10.8 48 303-351 74-125 (270)
367 KOG0384 Chromodomain-helicase 63.4 2.4 5.2E-05 57.0 0.1 25 131-155 300-324 (1373)
368 PTZ00112 origin recognition co 62.8 47 0.001 44.7 11.2 45 286-330 759-807 (1164)
369 PRK06305 DNA polymerase III su 62.7 36 0.00078 42.9 10.2 42 290-331 22-66 (451)
370 PRK10865 protein disaggregatio 62.2 3.8E+02 0.0082 36.8 20.3 26 306-331 600-625 (857)
371 KOG0952 DNA/RNA helicase MER3/ 61.9 9 0.00019 51.2 4.7 112 301-443 940-1061(1230)
372 PRK07952 DNA replication prote 61.8 25 0.00055 40.5 7.9 62 288-354 79-144 (244)
373 cd01124 KaiC KaiC is a circadi 61.6 19 0.00041 38.9 6.7 48 307-355 2-49 (187)
374 PF00004 AAA: ATPase family as 61.5 18 0.00039 36.3 6.1 35 308-346 2-36 (132)
375 PRK14873 primosome assembly pr 61.5 34 0.00074 45.1 10.0 94 606-703 170-265 (665)
376 PRK05986 cob(I)alamin adenolsy 61.3 72 0.0016 35.5 10.9 144 302-479 20-170 (191)
377 TIGR00678 holB DNA polymerase 61.0 44 0.00095 36.5 9.4 27 305-331 15-41 (188)
378 PRK10919 ATP-dependent DNA hel 60.5 21 0.00045 47.3 7.9 66 285-356 2-71 (672)
379 TIGR03689 pup_AAA proteasome A 60.3 19 0.00042 45.8 7.2 29 302-330 214-242 (512)
380 PRK11823 DNA repair protein Ra 60.2 37 0.00081 42.7 9.7 62 293-355 68-130 (446)
381 cd01120 RecA-like_NTPases RecA 60.0 50 0.0011 34.1 9.4 35 307-342 2-36 (165)
382 PRK06835 DNA replication prote 59.9 20 0.00044 43.2 7.0 55 284-339 159-217 (329)
383 KOG0991 Replication factor C, 59.7 16 0.00036 41.3 5.6 29 303-331 47-75 (333)
384 PRK13342 recombination factor 59.7 37 0.00081 42.2 9.6 24 305-328 37-60 (413)
385 PRK13833 conjugal transfer pro 59.7 18 0.00039 43.4 6.5 48 280-330 123-170 (323)
386 KOG0442 Structure-specific end 59.6 2.9E+02 0.0063 37.0 17.2 55 697-757 546-605 (892)
387 cd00561 CobA_CobO_BtuR ATP:cor 59.4 51 0.0011 35.6 9.2 55 421-475 88-146 (159)
388 PRK13826 Dtr system oriT relax 59.1 54 0.0012 45.5 11.4 59 284-346 380-438 (1102)
389 TIGR01557 myb_SHAQKYF myb-like 59.0 22 0.00048 31.6 5.3 48 968-1015 5-55 (57)
390 cd03115 SRP The signal recogni 58.8 50 0.0011 35.4 9.3 35 307-341 3-37 (173)
391 COG4626 Phage terminase-like p 58.7 54 0.0012 41.8 10.5 59 284-342 60-127 (546)
392 TIGR00643 recG ATP-dependent D 58.5 45 0.00098 43.9 10.5 97 606-705 266-367 (630)
393 PLN03091 hypothetical protein; 58.3 9.8 0.00021 46.5 3.9 51 1081-1134 14-64 (459)
394 COG1419 FlhF Flagellar GTP-bin 58.2 61 0.0013 40.0 10.5 56 429-485 282-342 (407)
395 COG2256 MGS1 ATPase related to 58.2 31 0.00067 42.2 8.0 25 303-327 47-71 (436)
396 PF13901 DUF4206: Domain of un 58.2 7.1 0.00015 43.6 2.6 39 50-97 151-197 (202)
397 TIGR02640 gas_vesic_GvpN gas v 58.0 23 0.0005 41.1 7.0 49 288-340 5-53 (262)
398 CHL00095 clpC Clp protease ATP 57.3 37 0.0008 46.1 9.6 28 303-330 199-226 (821)
399 PF00308 Bac_DnaA: Bacterial d 56.8 69 0.0015 36.2 10.3 37 428-464 97-137 (219)
400 TIGR00708 cobA cob(I)alamin ad 56.6 16 0.00034 39.9 4.8 56 421-476 90-149 (173)
401 TIGR03346 chaperone_ClpB ATP-d 56.4 39 0.00085 46.0 9.6 38 293-330 181-220 (852)
402 KOG1081 Transcription factor N 56.1 7.3 0.00016 49.0 2.5 47 49-98 87-133 (463)
403 PRK10867 signal recognition pa 55.8 51 0.0011 41.2 9.7 35 307-341 103-137 (433)
404 PRK13341 recombination factor 55.2 32 0.0007 45.8 8.3 25 304-328 52-76 (725)
405 KOG0048 Transcription factor, 55.2 9.2 0.0002 43.9 3.0 49 1083-1134 11-59 (238)
406 PRK12724 flagellar biosynthesi 54.9 55 0.0012 40.7 9.6 22 307-328 226-247 (432)
407 KOG1807 Helicases [Replication 54.3 36 0.00079 44.4 8.0 91 284-380 377-473 (1025)
408 TIGR00959 ffh signal recogniti 54.1 48 0.001 41.4 9.1 36 306-341 101-137 (428)
409 KOG4628 Predicted E3 ubiquitin 54.0 6.8 0.00015 46.9 1.7 44 52-98 230-276 (348)
410 PRK14971 DNA polymerase III su 53.4 87 0.0019 41.1 11.7 24 307-330 42-65 (614)
411 KOG1244 Predicted transcriptio 53.3 4.4 9.5E-05 46.0 -0.0 48 50-97 223-283 (336)
412 PF07432 Hc1: Histone H1-like 53.3 19 0.00042 36.1 4.3 49 1285-1333 3-51 (123)
413 KOG1133 Helicase of the DEAD s 53.2 24 0.00052 45.5 6.2 45 284-328 14-58 (821)
414 TIGR02397 dnaX_nterm DNA polym 52.9 71 0.0015 38.4 10.3 26 306-331 38-63 (355)
415 TIGR01075 uvrD DNA helicase II 52.7 39 0.00084 45.2 8.6 67 285-357 4-74 (715)
416 PRK05973 replicative DNA helic 52.5 34 0.00074 39.3 7.0 55 299-354 59-113 (237)
417 PRK09376 rho transcription ter 51.6 21 0.00046 43.8 5.3 31 301-331 166-196 (416)
418 COG0552 FtsY Signal recognitio 51.3 50 0.0011 39.6 8.1 124 307-472 142-275 (340)
419 PRK08699 DNA polymerase III su 51.1 77 0.0017 38.2 10.0 46 286-331 2-48 (325)
420 KOG2543 Origin recognition com 51.0 4.2E+02 0.0091 32.7 15.5 141 285-469 9-161 (438)
421 TIGR01425 SRP54_euk signal rec 51.0 1.2E+02 0.0027 37.8 11.9 34 307-341 103-136 (429)
422 TIGR01074 rep ATP-dependent DN 50.8 61 0.0013 42.9 9.9 65 286-356 2-70 (664)
423 PF11793 FANCL_C: FANCL C-term 50.6 1.7 3.7E-05 40.2 -3.2 47 52-98 3-64 (70)
424 COG0541 Ffh Signal recognition 50.1 39 0.00084 41.8 7.1 106 307-455 103-208 (451)
425 PF01393 Chromo_shadow: Chromo 49.7 7.3 0.00016 34.7 0.8 26 192-217 3-28 (58)
426 PRK11773 uvrD DNA-dependent he 49.4 49 0.0011 44.2 8.8 66 285-356 9-78 (721)
427 PRK07399 DNA polymerase III su 49.4 82 0.0018 37.7 9.8 43 290-332 9-54 (314)
428 TIGR03499 FlhF flagellar biosy 49.0 59 0.0013 38.3 8.4 38 304-341 194-232 (282)
429 PF00437 T2SE: Type II/IV secr 48.9 27 0.00059 40.5 5.6 37 295-331 118-154 (270)
430 CHL00206 ycf2 Ycf2; Provisiona 48.8 51 0.0011 47.7 8.7 43 302-348 1628-1670(2281)
431 PRK09183 transposase/IS protei 48.5 54 0.0012 38.1 7.9 51 290-345 92-142 (259)
432 PRK06921 hypothetical protein; 48.4 72 0.0016 37.3 8.9 43 303-345 116-158 (266)
433 PF12846 AAA_10: AAA-like doma 48.3 47 0.001 38.5 7.5 46 304-350 1-46 (304)
434 PF06745 KaiC: KaiC; InterPro 48.3 29 0.00062 39.1 5.5 55 302-356 17-71 (226)
435 TIGR02782 TrbB_P P-type conjug 47.7 39 0.00085 40.2 6.7 44 284-330 115-158 (299)
436 PRK12377 putative replication 47.3 1E+02 0.0022 35.8 9.8 44 304-348 101-144 (248)
437 PRK11034 clpA ATP-dependent Cl 47.3 38 0.00081 45.4 7.1 29 303-331 206-234 (758)
438 TIGR00767 rho transcription te 46.8 77 0.0017 39.2 9.0 31 301-331 165-195 (415)
439 PRK06995 flhF flagellar biosyn 46.7 83 0.0018 40.0 9.6 33 307-339 259-292 (484)
440 PF13832 zf-HC5HC2H_2: PHD-zin 46.7 10 0.00022 38.0 1.3 30 50-79 54-86 (110)
441 cd01128 rho_factor Transcripti 46.3 70 0.0015 37.0 8.3 26 302-327 14-39 (249)
442 PF14061 Mtf2_C: Polycomb-like 45.9 11 0.00023 32.2 1.2 22 196-217 27-49 (50)
443 PF03354 Terminase_1: Phage Te 45.8 1.2E+02 0.0026 38.6 11.0 54 288-342 1-63 (477)
444 PF13771 zf-HC5HC2H: PHD-like 45.1 11 0.00023 36.3 1.2 31 49-79 34-67 (90)
445 PRK10263 DNA translocase FtsK; 44.7 54 0.0012 45.8 7.9 41 303-343 1009-1052(1355)
446 PRK08939 primosomal protein Dn 44.7 34 0.00074 40.8 5.6 42 303-345 155-196 (306)
447 PRK10416 signal recognition pa 44.6 1.8E+02 0.004 34.9 11.7 33 307-340 117-149 (318)
448 PRK14712 conjugal transfer nic 44.6 1.1E+02 0.0024 44.2 11.1 60 285-346 835-897 (1623)
449 TIGR00580 mfd transcription-re 44.4 1E+02 0.0022 42.4 10.6 96 606-704 482-582 (926)
450 PRK14721 flhF flagellar biosyn 43.2 1.4E+02 0.0031 37.3 10.7 54 428-482 269-327 (420)
451 cd01129 PulE-GspE PulE/GspE Th 43.1 45 0.00098 38.9 6.2 43 286-330 64-106 (264)
452 PF06068 TIP49: TIP49 C-termin 43.0 34 0.00075 41.6 5.2 40 303-344 49-88 (398)
453 TIGR00416 sms DNA repair prote 42.7 52 0.0011 41.5 7.1 52 302-354 92-143 (454)
454 KOG4218 Nuclear hormone recept 42.6 13 0.00028 43.6 1.6 52 45-96 9-74 (475)
455 KOG0740 AAA+-type ATPase [Post 42.6 37 0.00081 42.1 5.5 47 304-354 186-232 (428)
456 TIGR03877 thermo_KaiC_1 KaiC d 42.4 62 0.0013 36.9 7.1 52 302-354 19-70 (237)
457 KOG0780 Signal recognition par 42.4 58 0.0012 39.7 6.8 36 307-342 104-139 (483)
458 PF13639 zf-RING_2: Ring finge 42.3 2.8 6.1E-05 34.7 -2.8 40 52-96 1-44 (44)
459 COG1435 Tdk Thymidine kinase [ 42.3 84 0.0018 35.1 7.5 35 307-342 7-41 (201)
460 PRK13766 Hef nuclease; Provisi 41.8 3.9E+02 0.0084 36.1 15.6 119 580-705 4-141 (773)
461 PRK13894 conjugal transfer ATP 41.7 51 0.0011 39.6 6.5 44 283-329 130-173 (319)
462 smart00300 ChSh Chromo Shadow 41.7 20 0.00043 32.3 2.3 24 192-215 7-30 (61)
463 PRK06646 DNA polymerase III su 41.5 42 0.00092 36.0 5.1 40 605-644 10-49 (154)
464 KOG0738 AAA+-type ATPase [Post 41.5 79 0.0017 38.6 7.7 48 304-355 245-292 (491)
465 TIGR00064 ftsY signal recognit 41.4 1.5E+02 0.0033 34.7 10.2 33 307-340 75-107 (272)
466 PRK13709 conjugal transfer nic 41.4 1.3E+02 0.0028 44.0 11.2 61 284-346 966-1029(1747)
467 TIGR03345 VI_ClpV1 type VI sec 40.9 5.3E+02 0.011 35.4 16.4 33 307-341 599-631 (852)
468 cd00984 DnaB_C DnaB helicase C 40.5 38 0.00082 38.4 5.0 43 300-342 9-51 (242)
469 PRK05728 DNA polymerase III su 40.1 47 0.001 35.1 5.2 83 605-706 10-96 (142)
470 cd00034 ChSh Chromo Shadow Dom 40.0 14 0.0003 32.4 1.0 22 194-215 2-24 (54)
471 TIGR03880 KaiC_arch_3 KaiC dom 39.5 72 0.0016 35.9 7.0 52 303-355 15-66 (224)
472 PRK14723 flhF flagellar biosyn 39.3 1.1E+02 0.0023 41.1 9.3 37 305-341 186-223 (767)
473 KOG0049 Transcription factor, 39.3 72 0.0016 40.7 7.2 75 969-1107 363-438 (939)
474 PRK08533 flagellar accessory p 39.1 74 0.0016 36.3 7.0 52 302-354 22-73 (230)
475 PF05970 PIF1: PIF1-like helic 39.0 67 0.0014 39.3 7.1 60 285-345 1-62 (364)
476 CHL00176 ftsH cell division pr 39.0 1.2E+02 0.0027 39.9 9.8 34 304-341 216-249 (638)
477 PHA00012 I assembly protein 38.3 67 0.0015 38.6 6.5 25 308-332 5-29 (361)
478 KOG0780 Signal recognition par 38.3 3.7E+02 0.0079 33.2 12.4 70 605-674 110-183 (483)
479 PRK08760 replicative DNA helic 38.1 83 0.0018 40.0 7.9 63 293-355 218-280 (476)
480 COG5114 Histone acetyltransfer 38.1 25 0.00054 40.9 2.9 36 1074-1111 58-93 (432)
481 cd00730 rubredoxin Rubredoxin; 38.0 17 0.00038 31.4 1.3 34 65-99 3-44 (50)
482 KOG0737 AAA+-type ATPase [Post 37.4 36 0.00077 41.2 4.1 50 302-355 125-174 (386)
483 TIGR01547 phage_term_2 phage t 37.3 1.2E+02 0.0027 37.2 9.1 36 307-342 4-41 (396)
484 COG0467 RAD55 RecA-superfamily 37.1 79 0.0017 36.5 7.0 52 302-354 21-72 (260)
485 PF13481 AAA_25: AAA domain; P 37.0 42 0.00092 36.5 4.5 54 303-356 31-93 (193)
486 cd00162 RING RING-finger (Real 36.8 11 0.00023 30.3 -0.2 41 54-97 2-43 (45)
487 COG1474 CDC6 Cdc6-related prot 36.6 3.1E+02 0.0068 33.7 12.2 47 285-331 20-69 (366)
488 PRK05564 DNA polymerase III su 36.5 1.6E+02 0.0035 35.1 9.6 25 307-331 29-53 (313)
489 TIGR03881 KaiC_arch_4 KaiC dom 36.5 93 0.002 35.0 7.3 52 301-353 17-68 (229)
490 PRK10689 transcription-repair 36.2 1.7E+02 0.0038 41.2 11.0 96 606-704 631-731 (1147)
491 PRK05748 replicative DNA helic 35.7 77 0.0017 39.8 7.1 61 292-352 191-251 (448)
492 TIGR02760 TraI_TIGR conjugativ 35.6 2.6E+02 0.0056 41.9 13.0 63 281-346 425-487 (1960)
493 TIGR02785 addA_Gpos recombinat 35.2 89 0.0019 44.5 8.2 59 286-350 2-62 (1232)
494 KOG2340 Uncharacterized conser 34.8 63 0.0014 40.7 5.7 121 613-735 540-667 (698)
495 KOG0921 Dosage compensation co 34.4 83 0.0018 42.0 6.9 32 299-330 388-419 (1282)
496 PF01443 Viral_helicase1: Vira 33.9 40 0.00087 37.8 3.8 41 428-471 62-102 (234)
497 COG1066 Sms Predicted ATP-depe 33.8 1.3E+02 0.0027 37.3 7.9 50 305-356 94-143 (456)
498 PRK12726 flagellar biosynthesi 33.8 1.9E+02 0.0041 35.9 9.4 46 304-350 206-255 (407)
499 TIGR01073 pcrA ATP-dependent D 33.5 68 0.0015 43.0 6.4 52 285-342 4-58 (726)
500 PRK13900 type IV secretion sys 33.4 68 0.0015 38.8 5.8 35 294-328 150-184 (332)
No 1
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=2.7e-170 Score=1561.96 Aligned_cols=926 Identities=42% Similarity=0.722 Sum_probs=756.7
Q ss_pred cccccccccccCCccCCC----Ccccc--------cchhhhHHHhhhhccCCccccccccChhhHHHhhhcChhHHHHHH
Q 000496 101 DIDKILDCEMRPTVAGDS----DVSKL--------GSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVN 168 (1462)
Q Consensus 101 didkIL~wR~rP~~~~~~----~~~~~--------g~~~~~~~eYlVKWkg~Sy~H~tWvpe~~L~~~~~~~~~~k~kl~ 168 (1462)
.|+.++++|.++...+.. ..... ..+.....||||||+|+||+||+|+|+++|... ..++-+|+.
T Consensus 184 ~ie~v~~~r~~~~~~~~~~~~~~i~d~~~p~~~~~~~~~~e~~qFlIKWkg~SyLHctWet~~~L~~~---~~rG~kKv~ 260 (1373)
T KOG0384|consen 184 TIERVLDHRGKKGATGSAETEYAIPDKGDPSAVFEEKKTEEEEQFLIKWKGWSYLHCTWETESELLEM---NVRGLKKVD 260 (1373)
T ss_pred hhHHHhhhhccccccCCCcccccccccCCccccccccCcchhhhhheeeccccceeccccchHHHHhh---hHHHHHHHH
Confidence 688888888655433310 00000 111134579999999999999999999997643 233446999
Q ss_pred hhhhhcccCCC--chhhhccCCCCccchhhhhhhccCCCCceEEEEEeccccccccccccccccc-chHHHHHHHHhhhc
Q 000496 169 NFHRQMSSNNN--AEEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISA-FQPEIERFIKIQSR 245 (1462)
Q Consensus 169 ~f~kk~~~~~~--~~~d~~~~~~~~~~veRII~~r~~~~~~eyLVKWk~L~Y~~~TWE~~~~i~~-~~~~i~~f~~~~~~ 245 (1462)
||.++...... ..++-..++++|.+|||||++....+ .+|||||++|||++||||...+|.. .+.+++.|..+...
T Consensus 261 nf~kK~~e~~~~~r~E~~~~~~~dy~~VdRIia~~~~~d-~eYLvKW~~LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~s 339 (1373)
T KOG0384|consen 261 NFKKKVIEEDRWRRQEREEDLNKDYVIVDRIIAEQTSKD-PEYLVKWRGLPYEECTWEDAEDIAKKAQEEIEEFQSRENS 339 (1373)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcccCCC-ceeEEEecCCCcccccccchhhhhhhHHHHHHHHhhhhcc
Confidence 99988543321 12333568899999999999987655 8999999999999999999999864 67788888865332
Q ss_pred ccccccCcCCCCCcccccccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHH
Q 000496 246 SHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL 325 (1462)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l 325 (1462)
.. .+...+...+.++.|.+++.||.|+.|++||+||++|+|||.++|+++.+||||||||||||+|+|+||
T Consensus 340 k~---------~p~~~~~~~~~rp~~~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl 410 (1373)
T KOG0384|consen 340 KT---------LPNKGCKYRPQRPRFRKLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFL 410 (1373)
T ss_pred cc---------CCCCccccCccchhHHHhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHH
Confidence 11 112223344567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCC--CCcEEEEEcchhHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccc
Q 000496 326 ASLFGER--ISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQD 403 (1462)
Q Consensus 326 ~~L~~~~--~~p~LIVvP~sll~qW~~E~~k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~ 403 (1462)
.+|+... .||||||||+|++.+|++||..|+ ++++++|+|+..+|+.|++|+|++.... .
T Consensus 411 ~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~-----------------~ 472 (1373)
T KOG0384|consen 411 SYLFHSLQIHGPFLVVVPLSTITAWEREFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNT-----------------K 472 (1373)
T ss_pred HHHHHhhhccCCeEEEeehhhhHHHHHHHHHHh-hhceeeeecchhHHHHHHHHHheecCCc-----------------c
Confidence 9999864 579999999999999999999999 9999999999999999999999976541 2
Q ss_pred cccccEEEecHHHHHhhhcccCCCcceeEecccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcC
Q 000496 404 RIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1462)
Q Consensus 404 ~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEAHrlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p 483 (1462)
..+|+++||||+++.+|...|..|+|.+++|||||||||..|+++..|..+..+||||+||||+||++.|||+|||||+|
T Consensus 473 ~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P 552 (1373)
T KOG0384|consen 473 KLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMP 552 (1373)
T ss_pred ccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHhhhhhHHHHHHHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcC
Q 000496 484 GKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG 563 (1462)
Q Consensus 484 ~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~ 563 (1462)
+.|.++++|...| +..+++.+..||..|+||||||+|+||++.||++.|+|+.|+||.+|+++|++||++|+.+|.++.
T Consensus 553 ~kf~~~~~f~~~~-~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~ 631 (1373)
T KOG0384|consen 553 GKFDSWDEFLEEF-DEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGA 631 (1373)
T ss_pred CCCCcHHHHHHhh-cchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccC
Confidence 9999999999999 778889999999999999999999999999999999999999999999999999999999999764
Q ss_pred -CchhhHHHHHHHHHHHhCCcccccCCCCCcccc------hHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhh
Q 000496 564 -GAQISLINVVMELRKLCCHPYMLEGVEPDIEDT------NESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM 636 (1462)
Q Consensus 564 -~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~~~------~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ 636 (1462)
++..+|+|++|+||||||||||+.+++...... ++.++.+|.+||||.+|++||.+|++.||||||||||++|
T Consensus 632 ~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRm 711 (1373)
T KOG0384|consen 632 KGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRM 711 (1373)
T ss_pred CCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHH
Confidence 345799999999999999999999987655432 3688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHh
Q 000496 637 LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMA 716 (1462)
Q Consensus 637 ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAig 716 (1462)
||||++||..+||+|.||||++.++.|+++||+||+++|..|||||||||||+||||++||||||||||||||+|+||++
T Consensus 712 LDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqA 791 (1373)
T KOG0384|consen 712 LDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQA 791 (1373)
T ss_pred HHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhccccc-------cCCCHHHHHHHHHhhhhhhhcccCcCC
Q 000496 717 RAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKA-------QNINQEELDDIIRYGSKELFADENDEG 789 (1462)
Q Consensus 717 RahRiGQ~k~V~VyrLvt~~TiEE~I~e~~~kK~~L~~~Vig~~~~-------~~~~~~el~~ll~~ga~~lf~~~~~~~ 789 (1462)
|||||||++.|.||||||++||||.|+++|++||.|+++||++|.+ +.++++||.+||+|||+++|.++++++
T Consensus 792 RaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene~ 871 (1373)
T KOG0384|consen 792 RAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENEE 871 (1373)
T ss_pred HHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhcccccc
Confidence 9999999999999999999999999999999999999999988753 568999999999999999999987665
Q ss_pred CCcccccCCHHHHHHHhccCCCCccccCCCCcchhhHHhHhhhhcccchhHHHHHHHHHHHHHHHhhccCCCCccchhhH
Q 000496 790 GKSRQIHYDDAAIDRLLDRDQVGDEEASLDDEDEDGFLKAFKVANFEYIEEVEAAAEEEAQKLAAENKSSMSNSERSSYW 869 (1462)
Q Consensus 790 ~~~~~~~~~d~~id~il~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 869 (1462)
. .+.++|||+||.|.+...++.++ -..+++||++|+||+|...|+.+-+ .. +.-.|
T Consensus 872 s-----~~~e~DIDeIL~rae~~~t~~~~-~~~a~e~ls~fkvad~~~dd~~~~~---------------~~---~didw 927 (1373)
T KOG0384|consen 872 S-----KFCEMDIDEILERAETRITEESD-FMKASELLSQFKVADIKADDPADLE---------------AE---RDIDW 927 (1373)
T ss_pred c-----cccccCHHHHHhhcccccccccc-cchhHHHHhhccccccccCChhhhh---------------hh---ccCCh
Confidence 4 35679999999999886665442 3457889999999999986652211 00 11469
Q ss_pred HHHHHHHHH-----HHHHHHhhhcCCCCCCcc--cccccchhhcccccccCCCCcccccccccCCCCCCCCCCCCCCCCc
Q 000496 870 EELLKDRYE-----VHKVEEFNALGKGKRSRK--QMVSVEEDDLAGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPN 942 (1462)
Q Consensus 870 ~~~~~~~~~-----~~~~~~~~~~~~~~r~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1462)
+.++++... +....+.+.+...+|.|. +......+. + . .++ .++. .. .+ ..
T Consensus 928 d~iipe~~r~~~~eeer~ke~ee~~~~~rer~~k~~~~~~~~~--~-~--~~~----~~e~-----~~-------~~-~~ 985 (1373)
T KOG0384|consen 928 DRIIPEEERERIEEEERLKELEELYSEPRERERKKNRLNDSHG--R-A--ESR----SVEK-----SL-------GK-KG 985 (1373)
T ss_pred hhhCCHHHHhcchhhhhHHHHHhhccchhhhhhhccccCcccc--c-c--ccc----cccc-----cc-------cc-cc
Confidence 999887543 233334555555555554 322211110 0 0 000 0000 00 00 01
Q ss_pred cccccCCCCCCCCCccccccchhccCCChHHHHHHHHHHHhcCCCCcchhhhc--hhhcCCCHHHHHHHHHHHHHhhhhc
Q 000496 943 KKRSRVDSMEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFT--PRLKQKSYEEIREYGILFLTHITED 1020 (1462)
Q Consensus 943 ~~~~~~~~~~~~p~~~~E~~~l~v~GF~~w~Rr~Fv~a~~KyG~~~~~~~~ia--~eL~~Ks~eEvk~Ya~lF~~~~~E~ 1020 (1462)
++|.+.+.. ..-.+.||+..+.|+|++++++||.+.+..+.|+ +++..++++++++.+.+....|.+.
T Consensus 986 ~~r~r~~~~----------~g~~~~~~~e~eir~~~ra~~kfg~~~~r~d~~~~~a~l~~~s~~~~~~l~~~~~~~c~~a 1055 (1373)
T KOG0384|consen 986 KGRWREILK----------RGEEKGGFTEKEIRRFYRAYLKFGLPLERLDEIIKDAELVDKSPAELKKLGELLHNACKSA 1055 (1373)
T ss_pred ccccccccc----------cchhhcCCCHHHHHHHHHHHHHhccHHHHHHHHHhhceeeccCHHHHHHHHHHHHhhhhhh
Confidence 122221110 1235679999999999999999999987766776 5788999999999999999998876
Q ss_pred cCCC----CCcc---C----CCCc-------Cc--cchHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccc---C
Q 000496 1021 ITDS----PTFS---D----GVPK-------EG--LRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYP---G 1077 (1462)
Q Consensus 1021 i~d~----e~~~---d----~i~k-------~~--~k~~~vl~Ri~~~~ll~~Kv~~~~~~p~~~~~~~~l~~~y~---~ 1077 (1462)
+.+. .++. . +.++ ++ +....|+.|+..+..|++.|-.....+. +..+.|. .
T Consensus 1056 ~~~~~~~~kk~~~~~~~~~~~p~~~a~~~~f~gv~~na~~vl~rv~~L~~L~~~i~~~~e~~~------~~~~~~~~~~~ 1129 (1373)
T KOG0384|consen 1056 VSEFGSNYKKTGGAREGKNKKPERKAVDFKFKGVKVNANKVLLRVEELYYLHKEIPGDPEDPN------QFIIDYLPKSV 1129 (1373)
T ss_pred cchhhhccccccccccccccCccchhhheeecceehhHHHHHHHHHHHHHHHHhccCCccccc------ccccCCCCccc
Confidence 5442 1111 0 0010 01 2344566777777777776655321111 1111121 1
Q ss_pred CCCCCccCHHHHHHHHHHHHhhccchhHHhhhCcccChHHHHH
Q 000496 1078 LRGGKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVIC 1120 (1462)
Q Consensus 1078 ~~~~~~w~~eeDr~LL~~i~k~Gyg~We~Ik~D~~l~l~~~i~ 1120 (1462)
..+++.|+.++|..||+|||+||||+|++||+||+|+|.+||.
T Consensus 1130 ~~~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dKi~ 1172 (1373)
T KOG0384|consen 1130 HSWDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDKIF 1172 (1373)
T ss_pred cCcccCCCchhhhhHhhhhhhcccccHHHhccCccccchhhhc
Confidence 2378999999999999999999999999999999999999994
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=5.9e-145 Score=1285.20 Aligned_cols=766 Identities=39% Similarity=0.630 Sum_probs=636.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHh-CC-CCcEEEEEcchhHHHHHHHHH
Q 000496 276 HSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ER-ISPHLVVAPLSTLRNWEREFA 353 (1462)
Q Consensus 276 ~~P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~-~~-~~p~LIVvP~sll~qW~~E~~ 353 (1462)
.+|.++.++.|||||++|+|||+.+|.++.|||||||||||||+|+|+|+.||+. .+ .|||||+||+||+.||.+||+
T Consensus 158 ~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~ 237 (971)
T KOG0385|consen 158 DSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFK 237 (971)
T ss_pred CCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999999999987 34 579999999999999999999
Q ss_pred HHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEe
Q 000496 354 TWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMI 433 (1462)
Q Consensus 354 k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VI 433 (1462)
+|+|++++++|+|++..|..++..-+ ....|+|+||||+++.++...|++++|.++|
T Consensus 238 rf~P~l~~~~~~Gdk~eR~~~~r~~~-----------------------~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylv 294 (971)
T KOG0385|consen 238 RFTPSLNVVVYHGDKEERAALRRDIM-----------------------LPGRFDVCITSYEIAIKDKSFLKKFNWRYLV 294 (971)
T ss_pred HhCCCcceEEEeCCHHHHHHHHHHhh-----------------------ccCCCceEeehHHHHHhhHHHHhcCCceEEE
Confidence 99999999999999999987766422 1248999999999999999999999999999
Q ss_pred cccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhh---hhHHHHHHHHH
Q 000496 434 VDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---NQEEQISRLHR 510 (1462)
Q Consensus 434 VDEAHrlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~---~~~~~i~~L~~ 510 (1462)
|||||||||.+|++++.|+.|.+.+||||||||+|||+.|||+|||||.|+.|.+.+.|..||... ...+.+.+||.
T Consensus 295 IDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~ 374 (971)
T KOG0385|consen 295 IDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHK 374 (971)
T ss_pred echhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999752 33458999999
Q ss_pred hhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHhCCcccccCC
Q 000496 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGG-AQISLINVVMELRKLCCHPYMLEGV 589 (1462)
Q Consensus 511 lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~-~~~~l~nil~~LRk~c~hP~L~~~~ 589 (1462)
+|+||+|||+|.+|++.|||+++.+++|.||++|+++|+.++.+....++..+. ....|+|++|+|||||||||||+++
T Consensus 375 vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ 454 (971)
T KOG0385|consen 375 VLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGA 454 (971)
T ss_pred hhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCC
Confidence 999999999999999999999999999999999999999999999999886554 6789999999999999999999999
Q ss_pred CCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHH
Q 000496 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1462)
Q Consensus 590 e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~ 669 (1462)
++..+.... .+|+.+||||.+|++||.+|+++||||||||||++|||||++||..+||.||||||+|+.++|..+|+.
T Consensus 455 ePg~pyttd--ehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~ 532 (971)
T KOG0385|consen 455 EPGPPYTTD--EHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEA 532 (971)
T ss_pred CCCCCCCcc--hHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHh
Confidence 987665554 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCCCHHHHHHHHHHHH
Q 000496 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKK 749 (1462)
Q Consensus 670 Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~~~kK 749 (1462)
||++++..|||||||||||+||||++||+||+||+||||+.|+||++|||||||+|+|.||||||++||||+|+++|..|
T Consensus 533 fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~K 612 (971)
T KOG0385|consen 533 FNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAK 612 (971)
T ss_pred cCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccc-----cccCCCHHHHHHHHHhhhhhhhcccCcCCCCcccccCCHHHHHHHhccCCCCccccCCC--Ccc
Q 000496 750 MVLEHLVVGRL-----KAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLD--DED 822 (1462)
Q Consensus 750 ~~L~~~Vig~~-----~~~~~~~~el~~ll~~ga~~lf~~~~~~~~~~~~~~~~d~~id~il~r~~~~~~~~~~~--~~~ 822 (1462)
+.|+++||+.. +...++++++..|+++|+..+|...+.+ .++ |||.||.|++..+.+.... ..+
T Consensus 613 L~Ld~~VIq~g~l~~~~~~~~~k~~~l~~~r~g~~~~f~~~es~--------~~d-Did~il~~~e~kt~e~~~~~~~~~ 683 (971)
T KOG0385|consen 613 LRLDKLVIQQGRLEEQKSNGLGKDELLNLLRFGADPVFESKEST--------ISD-DIDRILERGEEKTAELNAKEAKLG 683 (971)
T ss_pred hchhhhhhccCchhhhhccccchHHHHHHHHcCchhhhhhcccc--------cch-hHHHHHHhhhhhccCcchHHHhhC
Confidence 99999999543 2335789999999999999999876643 234 9999999998777664321 011
Q ss_pred hhhHHhHh---hhhcccchhHHHHHHHHHHHHHHHhhccCCCCccchhhHHHHHHHHHHHHHHHHhhhcCCCCCCccccc
Q 000496 823 EDGFLKAF---KVANFEYIEEVEAAAEEEAQKLAAENKSSMSNSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQMV 899 (1462)
Q Consensus 823 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~r~~~~ 899 (1462)
.++ +..| .+.+|+..+- .+. .. . . .|-+..+..-......-...+..|-|..|++.
T Consensus 684 ~~~-~~~~~~~~~y~~eG~d~----~ek--~~--~----------~--~wiep~krerk~~d~y~r~~l~~g~~~P~~~~ 742 (971)
T KOG0385|consen 684 ESD-LRNFGMISVYNFEGEDY----KEK--QS--L----------F--KWIEPPKRERKANDAYFREALRVGEPPPKQPE 742 (971)
T ss_pred cch-hhhcCcceeeccCCcch----hhh--hh--h----------h--hhcCCchhhhhhhhhHHHHHHhcCCCCCCCcc
Confidence 111 1122 2333332111 000 00 0 0 03221111000000011122334444444443
Q ss_pred ccchhhc-ccccccCCCCcccccccccCCCCCCCCCCCCCCCCccccccCCCCCCCCCcccc---ccchhccCCChHHHH
Q 000496 900 SVEEDDL-AGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPNKKRSRVDSMEPPPLMEGE---GRSFRVLGFSQNQRA 975 (1462)
Q Consensus 900 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~E---~~~l~v~GF~~w~Rr 975 (1462)
+....-+ ..+.+... .+-.+|... ..+.. .....||+.+| ++.++.+||++|++|
T Consensus 743 ~~d~qf~p~~L~el~~-kei~~~~k~------------------~e~~k--in~~~~lt~ee~~~k~~ll~~gft~w~k~ 801 (971)
T KOG0385|consen 743 VQDFQFFPKRLFELLE-KEIEYYRKT------------------IEQKK--INNAEPLTQEEEEEKEELLSQGFTNWTKR 801 (971)
T ss_pred ccccccCcHHHHHHHH-HHHHHHHHH------------------HHHHh--ccCCCCCCcHHHhhhhhhhhccccchhhh
Confidence 2110000 01111000 000011100 01111 23346777654 679999999999999
Q ss_pred H---HHHHHHhcCCCCcchhhhchhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccCCCCcCccchHHHHHHHHHHHHHH
Q 000496 976 A---FVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHITEDITDSPTFSDGVPKEGLRIQDVLVRIAVLLLIR 1052 (1462)
Q Consensus 976 ~---Fv~a~~KyG~~~~~~~~ia~eL~~Ks~eEvk~Ya~lF~~~~~E~i~d~e~~~d~i~k~~~k~~~vl~Ri~~~~ll~ 1052 (1462)
+ |++++.|||++++ +.|++++.+ +++||.+|+++||++|.| ++|+++++..|++|+.+++.. .-++.+|.
T Consensus 802 df~~fi~a~eKygr~di--~~ia~~~e~-~~eev~~y~rvfwer~~e-l~d~ek~~~~ie~~e~~i~r~---~~~~~~ld 874 (971)
T KOG0385|consen 802 DFNQFIKANEKYGRDDI--ENIAAEVEG-TPEEVGEYARVFWERLEE-LSDIEKIIYQIERGEKRIQRG---DSIKKALD 874 (971)
T ss_pred hHHHHHHHhhccCcchh--hhhHHhhcC-CHHHHHHHHHHHHHHHHH-hhhhHHHHHHHhhhHhhhhHH---HHHHHHHh
Confidence 6 5677889999886 589999998 999999999999999996 999999999999998888764 45678999
Q ss_pred HHHHhccCCCCCCCccccccccccCCCCCCccCHHHHHHHHHHHHhhccch---hHHhhhCc--------ccChHHHHHH
Q 000496 1053 DKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKHGYGR---WQAIVDDK--------DLKVQEVICQ 1121 (1462)
Q Consensus 1053 ~Kv~~~~~~p~~~~~~~~l~~~y~~~~~~~~w~~eeDr~LL~~i~k~Gyg~---We~Ik~D~--------~l~l~~~i~~ 1121 (1462)
.|+.+|. .| +++.+.|+.+ +++.|++++|+||+||+||+||++ |+.+++.. +|++.++..+
T Consensus 875 ~k~~~~k-~p------~~l~i~~~~n-k~~~ys~~edrfL~~~l~K~g~~~~~~~e~lr~~~~~~~~frfdw~~~sRt~~ 946 (971)
T KOG0385|consen 875 DKIARYK-AP------HQLRIQYGTN-KGKNYSEEEDRFLECMLHKLGFDAENVYEELRQPIRNSPQFRFDWFIKSRTAM 946 (971)
T ss_pred hhHhhhc-Cc------hheeeeeccc-cCCCCchhhHHHHHHHHHHhccCchhHHHHHHHHHhcCcccccceeeehhhHH
Confidence 9999997 45 4578899765 889999999999999999999998 88876655 8999999999
Q ss_pred HhcCCCCCCCC
Q 000496 1122 ELNLPFINLPV 1132 (1462)
Q Consensus 1122 e~~~~~~~~~~ 1132 (1462)
|+..+|++++.
T Consensus 947 el~Rr~ntli~ 957 (971)
T KOG0385|consen 947 ELQRRCNTLIT 957 (971)
T ss_pred HHHhcCCeeEE
Confidence 99999998875
No 3
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=7.1e-125 Score=1208.47 Aligned_cols=764 Identities=38% Similarity=0.627 Sum_probs=633.9
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC--CCCcEEEEEcchhHHHHH
Q 000496 272 QQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWE 349 (1462)
Q Consensus 272 ~~~~~~P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~--~~~p~LIVvP~sll~qW~ 349 (1462)
..+..+|.++. ++|||||++|++||+.++.++.+||||||||||||+|+|+++.++... ..+|+|||||++++.||.
T Consensus 157 ~~l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~ 235 (1033)
T PLN03142 157 TRLLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWM 235 (1033)
T ss_pred ceeccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHH
Confidence 45667899998 799999999999999999999999999999999999999999998763 246999999999999999
Q ss_pred HHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcc
Q 000496 350 REFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (1462)
Q Consensus 350 ~E~~k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w 429 (1462)
+||.+|+|.+++++|+|+...|..+....+ ...+|+|+||||+++.++...|..+.|
T Consensus 236 ~Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~-----------------------~~~~~dVvITSYe~l~~e~~~L~k~~W 292 (1033)
T PLN03142 236 NEIRRFCPVLRAVKFHGNPEERAHQREELL-----------------------VAGKFDVCVTSFEMAIKEKTALKRFSW 292 (1033)
T ss_pred HHHHHHCCCCceEEEeCCHHHHHHHHHHHh-----------------------cccCCCcceecHHHHHHHHHHhccCCC
Confidence 999999999999999999988876655322 124689999999999999999999999
Q ss_pred eeEecccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhh---hhHHHHH
Q 000496 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---NQEEQIS 506 (1462)
Q Consensus 430 ~~VIVDEAHrlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~---~~~~~i~ 506 (1462)
++|||||||+|||..|+++++++.+.+.+||+|||||++|++.|||+||+||.|+.|++...|..+|... .....+.
T Consensus 293 ~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~ 372 (1033)
T PLN03142 293 RYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQ 372 (1033)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999642 3456788
Q ss_pred HHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccc
Q 000496 507 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1462)
Q Consensus 507 ~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~ 586 (1462)
.|+.+|+||++||+|.+|...|||+.+.+++|.||+.|+.+|+.++.+....++.. +....+++++|+||+||+||||+
T Consensus 373 ~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g-~~~~~LlnilmqLRk~cnHP~L~ 451 (1033)
T PLN03142 373 QLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAG-GERKRLLNIAMQLRKCCNHPYLF 451 (1033)
T ss_pred HHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhCCHHhh
Confidence 99999999999999999999999999999999999999999999999888777653 34567899999999999999999
Q ss_pred cCCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Q 000496 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1462)
Q Consensus 587 ~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~ 666 (1462)
.+.++...... ...++..|+|+.+|+++|..+...|+||||||||+.++++|+++|..+|++|++|+|+++..+|+.+
T Consensus 452 ~~~ep~~~~~~--~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~ 529 (1033)
T PLN03142 452 QGAEPGPPYTT--GEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDAS 529 (1033)
T ss_pred hcccccCcccc--hhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 88776544332 3578889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCCCHHHHHHHHH
Q 000496 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (1462)
Q Consensus 667 Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~~ 746 (1462)
|++||++++..++||+||+|||+||||+.||+||+||+||||+.++||+||||||||+++|.||||++++||||+|++++
T Consensus 530 Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera 609 (1033)
T PLN03142 530 IDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERA 609 (1033)
T ss_pred HHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHH
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccc---cccCCCHHHHHHHHHhhhhhhhcccCcCCCCcccccCCHHHHHHHhccCCCCccccCC--CCc
Q 000496 747 KKKMVLEHLVVGRL---KAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASL--DDE 821 (1462)
Q Consensus 747 ~kK~~L~~~Vig~~---~~~~~~~~el~~ll~~ga~~lf~~~~~~~~~~~~~~~~d~~id~il~r~~~~~~~~~~--~~~ 821 (1462)
.+|+.|+..|++.. ....+++++|.+|+++|++.+|+..+ ..++|+|||.||+|++..+.+... ...
T Consensus 610 ~~Kl~Ld~~Vi~~g~~~~~~~~~~~eL~~ll~~ga~~~f~~~~--------~~~~~~did~il~~~~~~~~~~~~~~~~~ 681 (1033)
T PLN03142 610 YKKLALDALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKD--------STITDEDIDRIIAKGEEATAELDAKMKKF 681 (1033)
T ss_pred HHHHHHHHHHHhcCcccccccCCHHHHHHHHHhChHHhhhccC--------CCCCHHHHHHHHHhcHHHHHHHHHHHHHh
Confidence 99999999999543 23568899999999999999996443 135899999999999876654221 000
Q ss_pred chhhHHhHhhhh----cccchhHHHHHHHHHHHHHHHhhccCCCCccchhhHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 000496 822 DEDGFLKAFKVA----NFEYIEEVEAAAEEEAQKLAAENKSSMSNSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQ 897 (1462)
Q Consensus 822 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~r~~ 897 (1462)
..+. + .|++. -|++..+......+ -.|.+ .....++.++||.||+
T Consensus 682 ~~~~-~-~f~~~~~~~~~~~~g~~~~~~~~-------------------~~~~~----------~~~~~~~~~~~re~~~ 730 (1033)
T PLN03142 682 TEDA-I-KFKMDDTAELYDFDDEDDKDENK-------------------LDFKK----------IVSDNWIDPPKRERKR 730 (1033)
T ss_pred chhh-h-cccccCCcceeeecCccccchhh-------------------hhHhh----------hccccccccchhhhhc
Confidence 1111 1 23322 12221110000000 00000 0112344555666654
Q ss_pred ccccchhhcccccccCCCCcccccccccCCCCCCCCCCCCCCCCc-----------------------------------
Q 000496 898 MVSVEEDDLAGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPN----------------------------------- 942 (1462)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 942 (1462)
.+.. |.+|.+.+..+.. ..+..+|.++
T Consensus 731 ~~~~----------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~q~~~~~~l~~l~~~e~~~~~~~~~~~~~ 792 (1033)
T PLN03142 731 NYSE----------------SEYFKQAMRQGAP--AKPKEPRIPRMPQLHDFQFFNVQRLTELYEKEVRYLMQAHQKGQL 792 (1033)
T ss_pred ccch----------------hHHHHHHHhcCCc--ccCCCCCCCCCCCCccccCCCHHHHHHHHHHHHHHHhccccCCch
Confidence 3321 1122222211110 0000011000
Q ss_pred --cccccCCCCCCCCCcccc---ccchhccCCChHHHHH---HHHHHHhcCCCCcchhhhchhhcCCCHHHHHHHHHHHH
Q 000496 943 --KKRSRVDSMEPPPLMEGE---GRSFRVLGFSQNQRAA---FVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFL 1014 (1462)
Q Consensus 943 --~~~~~~~~~~~~p~~~~E---~~~l~v~GF~~w~Rr~---Fv~a~~KyG~~~~~~~~ia~eL~~Ks~eEvk~Ya~lF~ 1014 (1462)
........+.+.|||++| +++|+.+||++|+||+ ||++|.||||.++ ..||.++.+||++||++|+++||
T Consensus 793 ~~~~~~~~~~~~~~~lt~~e~~~k~~l~~~gf~~w~~~~f~~f~~~~~~~gr~~~--~~i~~~~~~k~~~ev~~y~~~f~ 870 (1033)
T PLN03142 793 KDTIDVAEPEEPGDPLTAEEQEEKEQLLEEGFSTWSRRDFNAFIRACEKYGRNDI--KSIASEMEGKTEEEVERYAKVFW 870 (1033)
T ss_pred hhhhhhccccccCCCCCHHHHHHHHHHHhcCcCcccHHHHHHHHHHHHHhCHhHH--HHHHHHhcCCCHHHHHHHHHHHH
Confidence 000011233467899887 5799999999999996 6889999999876 58999999999999999999999
Q ss_pred HhhhhccCCCCCccCCCCcCccchHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCCCCccCHHHHHHHHH
Q 000496 1015 THITEDITDSPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLR 1094 (1462)
Q Consensus 1015 ~~~~E~i~d~e~~~d~i~k~~~k~~~vl~Ri~~~~ll~~Kv~~~~~~p~~~~~~~~l~~~y~~~~~~~~w~~eeDr~LL~ 1094 (1462)
+||.| ++||++++..|++|+.++++. ...+.+|+.||+.|. +| + .+|.++|+ .++++.|++++||||||
T Consensus 871 ~~~~~-~~~~~~~~~~ie~~e~~~~~~---~~~~~~~~~k~~~~~-~p---~--~~l~~~~~-~~~~~~~~~~~d~~~~~ 939 (1033)
T PLN03142 871 ERYKE-LNDYDRIIKNIERGEARISRK---DEIMKAIGKKLDRYK-NP---W--LELKIQYG-QNKGKLYNEECDRFMLC 939 (1033)
T ss_pred Hhhhh-hccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcc-Cc---H--HHceeecC-CCCCCcCCHHHHHHHHH
Confidence 99996 999999999999999888764 456799999999997 67 5 56889996 46789999999999999
Q ss_pred HHHhhccchhHHhhhCc--------ccChHHHHHHHhcCCCCCCCC
Q 000496 1095 AVLKHGYGRWQAIVDDK--------DLKVQEVICQELNLPFINLPV 1132 (1462)
Q Consensus 1095 ~i~k~Gyg~We~Ik~D~--------~l~l~~~i~~e~~~~~~~~~~ 1132 (1462)
++|+||||+||.|+.+. +|++.++..+||+.||.+|+.
T Consensus 940 ~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~ 985 (1033)
T PLN03142 940 MVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR 985 (1033)
T ss_pred HHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence 99999999999987776 899999999999999998875
No 4
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.4e-94 Score=875.20 Aligned_cols=506 Identities=44% Similarity=0.725 Sum_probs=447.2
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC--CCCcEEEEEcchhHHHHH
Q 000496 272 QQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWE 349 (1462)
Q Consensus 272 ~~~~~~P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~--~~~p~LIVvP~sll~qW~ 349 (1462)
.....||..+.||+|++||+.||.||..++.++-+||||||||||||+|+|+++.||.+. ..||+|||||+++|.||.
T Consensus 381 E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~ 460 (1157)
T KOG0386|consen 381 ENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWS 460 (1157)
T ss_pred hccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCch
Confidence 456789999999999999999999999999999999999999999999999999999874 357999999999999999
Q ss_pred HHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcc
Q 000496 350 REFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (1462)
Q Consensus 350 ~E~~k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w 429 (1462)
.||.+|+|.+..+.|.|+.+.|..+..- ....+|+|++|||+.+.++...|.+|.|
T Consensus 461 ~Ef~kWaPSv~~i~YkGtp~~R~~l~~q------------------------ir~gKFnVLlTtyEyiikdk~lLsKI~W 516 (1157)
T KOG0386|consen 461 SEFPKWAPSVQKIQYKGTPQQRSGLTKQ------------------------QRHGKFNVLLTTYEYIIKDKALLSKISW 516 (1157)
T ss_pred hhccccccceeeeeeeCCHHHHhhHHHH------------------------HhcccceeeeeeHHHhcCCHHHHhccCC
Confidence 9999999999999999999999865432 1126999999999999999999999999
Q ss_pred eeEecccccccCCcchHHHHHHH-hccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh--------
Q 000496 430 QCMIVDEGHRLKNKDSKLFSSLK-QYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN-------- 500 (1462)
Q Consensus 430 ~~VIVDEAHrlKN~~Sk~~~~l~-~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~-------- 500 (1462)
.++||||+||+||..+++...+. .+.+.+||||||||+||++.|||+||+||.|.+|.+...|.+||...-
T Consensus 517 ~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~e 596 (1157)
T KOG0386|consen 517 KYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVE 596 (1157)
T ss_pred cceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCccc
Confidence 99999999999999999999999 678999999999999999999999999999999999999999996421
Q ss_pred --hH---HHHHHHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHH--hcCCchhhHHHHH
Q 000496 501 --QE---EQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILT--RRGGAQISLINVV 573 (1462)
Q Consensus 501 --~~---~~i~~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~--~~~~~~~~l~nil 573 (1462)
.+ -.+.+||++|+||+|||.|++|+..||.+++.++.|.||..|+.+|+.+.....-... ++.+....+.|.+
T Consensus 597 LteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~i 676 (1157)
T KOG0386|consen 597 LTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTI 676 (1157)
T ss_pred ccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHh
Confidence 12 2578999999999999999999999999999999999999999999998754332222 2445567899999
Q ss_pred HHHHHHhCCcccccCCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEE
Q 000496 574 MELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYER 653 (1462)
Q Consensus 574 ~~LRk~c~hP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~r 653 (1462)
|+|||||||||++..++......... ..|+..|||+.+|+++|.+|++.|||||.|+||++++++|++||..++++|.|
T Consensus 677 mqLRKiCNHP~lf~~ve~~~~~~~~~-~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlR 755 (1157)
T KOG0386|consen 677 MQLRKLCNHPYLFANVENSYTLHYDI-KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLR 755 (1157)
T ss_pred HHHHHhcCCchhhhhhccccccccCh-hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheee
Confidence 99999999999998876654433222 67899999999999999999999999999999999999999999999999999
Q ss_pred EecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEe
Q 000496 654 IDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 733 (1462)
Q Consensus 654 IdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLv 733 (1462)
+||+|..++|...++.||.+++..|+||+||+|||+|+||++||+|||||+||||+.++||.+|||||||++.|.|+||+
T Consensus 756 LDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 756 LDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred ecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHhc--cccccCCCHHHHHHHHHhhhhhhhcccCcCCCCcccccCCHHHHHHHhccCC
Q 000496 734 TRGSIEERMMQMTKKKMVLEHLVVG--RLKAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQ 810 (1462)
Q Consensus 734 t~~TiEE~I~e~~~kK~~L~~~Vig--~~~~~~~~~~el~~ll~~ga~~lf~~~~~~~~~~~~~~~~d~~id~il~r~~ 810 (1462)
+.++|||.|+..+..|+..+..|+. .++. .-+.++=+.+|+ .+...++++.+ .-.-+++.|..+|.|++
T Consensus 836 tv~sveE~il~~a~~Kl~~d~kviqag~fdn-~st~~eR~~~Le----~~l~~~~~~~~---~~v~~~~~ln~~larse 906 (1157)
T KOG0386|consen 836 TVNSVEEKILAEAFYKLDVDGKVIQAGKFDN-KSTAEEREMFLE----QLLEMEGDEEE---EEVPDDEVLNSMLARSE 906 (1157)
T ss_pred hhhHHHHHHHHHHHHhcCchHhhhhcccccC-CCcHHHHHHHHH----HHHhCCCcccc---ccCCcHHHHHHHHhcch
Confidence 9999999999999999999999994 3333 233334334432 23333332221 12346788999999875
No 5
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=7.4e-92 Score=837.03 Aligned_cols=463 Identities=44% Similarity=0.671 Sum_probs=406.2
Q ss_pred ccCCCCCC-CCCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC-CCcEEEEEcchhHHHHHHH
Q 000496 274 YEHSPEFL-SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWERE 351 (1462)
Q Consensus 274 ~~~~P~~~-~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~-~~p~LIVvP~sll~qW~~E 351 (1462)
+..||..+ ++.+|+|||+-|||||.-.+.++-+||||||||||||+|+|||+++|+..+ .+|+|||||.||+.||.+|
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleNWlrE 466 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLENWLRE 466 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHHHHHH
Confidence 44577766 467999999999999999999999999999999999999999999999875 4699999999999999999
Q ss_pred HHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh---hhcccCCCc
Q 000496 352 FATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL---DSASLKPIK 428 (1462)
Q Consensus 352 ~~k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~---d~~~L~~i~ 428 (1462)
|.+|||.+.|..|+|+...|..++..-- ....+|+|+||||..+.. |+.+|+..+
T Consensus 467 f~kwCPsl~Ve~YyGSq~ER~~lR~~i~----------------------~~~~~ydVllTTY~la~~~kdDRsflk~~~ 524 (941)
T KOG0389|consen 467 FAKWCPSLKVEPYYGSQDERRELRERIK----------------------KNKDDYDVLLTTYNLAASSKDDRSFLKNQK 524 (941)
T ss_pred HHHhCCceEEEeccCcHHHHHHHHHHHh----------------------ccCCCccEEEEEeecccCChHHHHHHHhcc
Confidence 9999999999999999999998876411 123489999999999854 678899999
Q ss_pred ceeEecccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCC-hHHHHHHHhhhh-------
Q 000496 429 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGS-LEEFQEEFKDIN------- 500 (1462)
Q Consensus 429 w~~VIVDEAHrlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~-~~~F~e~f~~~~------- 500 (1462)
|+++|.||+|.|||..|.+++.|..+++++||||||||+|||+.||++||.|+.|+.|.+ .+++..-|....
T Consensus 525 ~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e 604 (941)
T KOG0389|consen 525 FNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIE 604 (941)
T ss_pred ccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhh
Confidence 999999999999999999999999999999999999999999999999999999999974 466666664322
Q ss_pred ----hHHHHHHHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCc--hhhHHHHHH
Q 000496 501 ----QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGA--QISLINVVM 574 (1462)
Q Consensus 501 ----~~~~i~~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~--~~~l~nil~ 574 (1462)
..+.|.+-..+++||+|||.|.+|+++||||..++.+|+|+..|+.+|..+++.....++....+ ..+ .+++|
T Consensus 605 ~~~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~-~~vlm 683 (941)
T KOG0389|consen 605 NALLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKS-GNVLM 683 (941)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcccccccccccc-chHHH
Confidence 14578899999999999999999999999999999999999999999999988763333322222 112 56999
Q ss_pred HHHHHhCCcccccCCCCC---------------cccchH--H-----------HH----------------HHhhhchHH
Q 000496 575 ELRKLCCHPYMLEGVEPD---------------IEDTNE--S-----------FK----------------QLLESSGKL 610 (1462)
Q Consensus 575 ~LRk~c~hP~L~~~~e~~---------------~~~~~~--~-----------~~----------------~li~~SgKl 610 (1462)
+|||+++||.|+...-.+ ....+. . +. .++-.|||.
T Consensus 684 qlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~ 763 (941)
T KOG0389|consen 684 QLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKC 763 (941)
T ss_pred HHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhH
Confidence 999999999987532211 000000 0 00 123469999
Q ss_pred HHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccc
Q 000496 611 QLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLG 690 (1462)
Q Consensus 611 ~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~G 690 (1462)
..|.+||+++++.|+||||||||+.|||||+-+|...|++|+|+||+|....||.+|+.||. +.+.|||||||+|||.|
T Consensus 764 r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~-d~difVFLLSTKAGG~G 842 (941)
T KOG0389|consen 764 RKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNT-DKDIFVFLLSTKAGGFG 842 (941)
T ss_pred hHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhcc-CCceEEEEEeeccCcce
Confidence 99999999999999999999999999999999999999999999999999999999999997 55678999999999999
Q ss_pred cCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhccc
Q 000496 691 INLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRL 760 (1462)
Q Consensus 691 INL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~~~kK~~L~~~Vig~~ 760 (1462)
|||++||+|||+|.++||..|.||.+||||+||+|+|+|||||+++||||.|++.+++|+.|+..+.+..
T Consensus 843 INLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~ 912 (941)
T KOG0389|consen 843 INLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDG 912 (941)
T ss_pred ecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999987544
No 6
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=2.2e-90 Score=835.00 Aligned_cols=472 Identities=40% Similarity=0.712 Sum_probs=418.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC--CCCcEEEEEcchhHHHHHHHHHHHCC
Q 000496 280 FLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWEREFATWAP 357 (1462)
Q Consensus 280 ~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~--~~~p~LIVvP~sll~qW~~E~~k~~P 357 (1462)
++-.|.||.||..|++||..+|.++-|||||||||||||||+|+|+++|..+ +.||+|||||.+++-||.-||++|+|
T Consensus 610 sLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcP 689 (1958)
T KOG0391|consen 610 SLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCP 689 (1958)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCC
Confidence 3345899999999999999999999999999999999999999999999754 45799999999999999999999999
Q ss_pred CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEecccc
Q 000496 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEG 437 (1462)
Q Consensus 358 ~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEA 437 (1462)
.++++.|+|+...|+.-+. +|. ....|||+||||..+..+...|+...|.|+|+|||
T Consensus 690 glKILTYyGs~kErkeKRq-gW~----------------------kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEa 746 (1958)
T KOG0391|consen 690 GLKILTYYGSHKERKEKRQ-GWA----------------------KPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEA 746 (1958)
T ss_pred cceEeeecCCHHHHHHHhh-ccc----------------------CCCeeEEeehhhHHHHhHHHHHHhhccceeehhhh
Confidence 9999999999999875443 121 12479999999999999999999999999999999
Q ss_pred cccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh----------hHHHHHH
Q 000496 438 HRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN----------QEEQISR 507 (1462)
Q Consensus 438 HrlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~----------~~~~i~~ 507 (1462)
|+|||..|+.+++|.+|++.+|||||||||||++.|||+|++||+|..|.+...|..||.+.- ....+.+
T Consensus 747 qnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn~klV~R 826 (1958)
T KOG0391|consen 747 QNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYNHKLVIR 826 (1958)
T ss_pred hhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997521 2467899
Q ss_pred HHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccccc
Q 000496 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (1462)
Q Consensus 508 L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~ 587 (1462)
||++|+||+|||+|.||+++||.|.|++|+|.||.-|+.+|+.++.+.-..-+-..|.-++.+|++|+||||||||-||+
T Consensus 827 LHkVlrPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfE 906 (1958)
T KOG0391|consen 827 LHKVLRPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFE 906 (1958)
T ss_pred HHHHhHHHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcCCCCcCC
Confidence 99999999999999999999999999999999999999999999877655555567788999999999999999997753
Q ss_pred CCC-----------------------------C---------------Cc------------------cc----------
Q 000496 588 GVE-----------------------------P---------------DI------------------ED---------- 595 (1462)
Q Consensus 588 ~~e-----------------------------~---------------~~------------------~~---------- 595 (1462)
.-- + .. ..
T Consensus 907 pRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~ 986 (1958)
T KOG0391|consen 907 PRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTF 986 (1958)
T ss_pred CCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCccc
Confidence 100 0 00 00
Q ss_pred ----------------chH-------------------------------------------------------------
Q 000496 596 ----------------TNE------------------------------------------------------------- 598 (1462)
Q Consensus 596 ----------------~~~------------------------------------------------------------- 598 (1462)
..+
T Consensus 987 ~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~ 1066 (1958)
T KOG0391|consen 987 AGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVP 1066 (1958)
T ss_pred cccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeecccc
Confidence 000
Q ss_pred -----------------------------------------------------------------------HHH------
Q 000496 599 -----------------------------------------------------------------------SFK------ 601 (1462)
Q Consensus 599 -----------------------------------------------------------------------~~~------ 601 (1462)
.+.
T Consensus 1067 t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~ 1146 (1958)
T KOG0391|consen 1067 TQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVN 1146 (1958)
T ss_pred ccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhcc
Confidence 000
Q ss_pred ------------------------------------------HHh-----------------------------------
Q 000496 602 ------------------------------------------QLL----------------------------------- 604 (1462)
Q Consensus 602 ------------------------------------------~li----------------------------------- 604 (1462)
.+|
T Consensus 1147 APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~ 1226 (1958)
T KOG0391|consen 1147 APVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQ 1226 (1958)
T ss_pred CcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHH
Confidence 000
Q ss_pred ------------------------------hhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEE
Q 000496 605 ------------------------------ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERI 654 (1462)
Q Consensus 605 ------------------------------~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rI 654 (1462)
..+||++.|.-||+.|+..|||||||+||+.|||+|+.||.++||-|.||
T Consensus 1227 qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RL 1306 (1958)
T KOG0391|consen 1227 QLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRL 1306 (1958)
T ss_pred HHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEe
Confidence 03889999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEec
Q 000496 655 DGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLIT 734 (1462)
Q Consensus 655 dGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt 734 (1462)
||+++.++||.++++||+ +...||||||||.||+||||+.||||||||+||||..|.||.+|||||||++.|+|||||.
T Consensus 1307 Dg~t~vEqRQaLmerFNa-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLIS 1385 (1958)
T KOG0391|consen 1307 DGNTSVEQRQALMERFNA-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLIS 1385 (1958)
T ss_pred cCCccHHHHHHHHHHhcC-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeec
Confidence 999999999999999998 6678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhccc--cccCCCHHHHHHHHH
Q 000496 735 RGSIEERMMQMTKKKMVLEHLVVGRL--KAQNINQEELDDIIR 775 (1462)
Q Consensus 735 ~~TiEE~I~e~~~kK~~L~~~Vig~~--~~~~~~~~el~~ll~ 775 (1462)
++||||.|+..+.+|.+|++.++++. ...-+.+..+.+||.
T Consensus 1386 e~TIEeniLkkanqKr~L~evaiqggdfTt~ff~q~ti~dLFd 1428 (1958)
T KOG0391|consen 1386 ERTIEENILKKANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFD 1428 (1958)
T ss_pred cchHHHHHHhhhhHHHHHHHHhhccCCccHHHHhhhhHHHHhc
Confidence 99999999999999999999999543 334455666666553
No 7
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=3.1e-92 Score=863.02 Aligned_cols=661 Identities=48% Similarity=0.794 Sum_probs=559.4
Q ss_pred cccccccCCCccccCCCCCCCcccccCCCCCCch-hhhhhhhccccccccccccCCCCCeeecCCCCCccccccCCCCCC
Q 000496 5 VERLRVRSDRKPIYQLDESDDDADFEQGKPGTTV-EKFERIVRIDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLK 83 (1462)
Q Consensus 5 ~~~~r~r~~~kp~~~~de~dd~~d~~~~~~~~~~-~~~~~~~~~~~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~ 83 (1462)
..|++.+.-..|.+..+- |. +...+...+.+. .......+.+.+...|.+|+++|.+++|++|+.+||.+|+.||+.
T Consensus 2 ~~r~~~~~~~~p~~~~~~-~~-~~k~~~~e~~~~~~~~~~~~~~~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~ 79 (696)
T KOG0383|consen 2 CPRAYHRVCLDPKLKEEP-EM-DPKCPGCESSSAQVEAKDDDWDDAEQEACRICADGGELLWCDTCPASFHASCLGPPLT 79 (696)
T ss_pred CCcccCcCCCCcccccCC-cC-CccCcchhhcccccccccCCcchhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCC
Confidence 356777777777774322 22 122221111110 111111256777889999999999999999999999999999999
Q ss_pred CCCCCCCCCCccCCCCC--cccccccccccCCccC-C--C-CcccccchhhhHHHhhhhccCCccccccccChhhHHHhh
Q 000496 84 APPSGSWRCPECVSPLN--DIDKILDCEMRPTVAG-D--S-DVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAF 157 (1462)
Q Consensus 84 ~~p~~~W~C~~C~~~~~--didkIL~wR~rP~~~~-~--~-~~~~~g~~~~~~~eYlVKWkg~Sy~H~tWvpe~~L~~~~ 157 (1462)
..|.+.|.|++|.++.+ .+.+|+.|+|+|+... . . ............++|+|||+|.||+||.|+.+.++....
T Consensus 80 ~~p~~~~~c~Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~re~~vk~qg~s~~~c~~~~e~~~q~~~ 159 (696)
T KOG0383|consen 80 PQPNGEFICPRCFCPKNAGKIEKILGWRWKPTPKPREGNQGVISPRRSNGIVEREFFVKWQGLSYWHCSWKSELLLQNPL 159 (696)
T ss_pred cCCccceeeeeeccCCCcccccccceeEecCCCCccccCcCccCCcccccchhhhcccccccCCccchhHHHHHHhhhhc
Confidence 99999999999977765 8999999999988754 1 1 112223445667999999999999999999999887654
Q ss_pred hcChhHHHHHHhhhhhcccCC----------------C-c--hh--hhccCCCCccchhhhhhhc-cCCCCceEEEEEec
Q 000496 158 KSNPRLRTKVNNFHRQMSSNN----------------N-A--EE--DFVAIRPEWTTVDRILACR-GEDDEKEYLVKYKE 215 (1462)
Q Consensus 158 ~~~~~~k~kl~~f~kk~~~~~----------------~-~--~~--d~~~~~~~~~~veRII~~r-~~~~~~eyLVKWk~ 215 (1462)
... ..++........ . . ++ ..+.+.|+|+.+.||+.++ ...+...|+|||+.
T Consensus 160 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~a~~~~r~~~~~iKpe~~~i~rii~~~~s~~~~~~~~Vk~k~ 233 (696)
T KOG0383|consen 160 NTL------PVELQRKHDTDQKPEAEIGVTRDKGKLVPYADLEERFLLYGIKPEWMPIARIINRRSSQKGATDYLVKWKE 233 (696)
T ss_pred ccc------hHhhhhhhhcccCccccccccccCccccccccchhhhhheeccccccccchhhhhhcccccceeeEeeecc
Confidence 322 122222211100 0 0 11 1245789999999999999 45678899999999
Q ss_pred cccccccccccc-ccccchHHHHHHHHhhhcccccccCcCCCCCcccccccCCCcccccccCCCCCCC--CCCCCHHHHH
Q 000496 216 LSYDECYWEYES-DISAFQPEIERFIKIQSRSHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLS--GGSLHPYQLE 292 (1462)
Q Consensus 216 L~Y~~~TWE~~~-~i~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~--g~~LrpyQle 292 (1462)
|+|++++|+.+. ++..++..+++|....... . ..+. .. .........+..+|.++. ++.|++||++
T Consensus 234 l~~d~~~~e~~~~~ip~~~~~~qe~~~~~~~~-~--~~k~------~~--~~~~~~~v~~~~qP~~l~~~~g~L~~~qle 302 (696)
T KOG0383|consen 234 LSYDEQEWEVEDPDIPGYSSAGQEAWHHREKP-T--VSKD------LK--SNTVDDPVPYEDQPQFLTEPGGTLHPYQLE 302 (696)
T ss_pred CCccccCCCcCCCCcccCcccccccccccCcc-c--cccc------cc--ccccCCCCCcccCCccccCCCccccccchh
Confidence 999999999887 7888888888888654431 0 0000 00 013455677889999987 5899999999
Q ss_pred HHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCC--CcEEEEEcchhHHHHHHHHHHHCCCCeEEEEEcChhH
Q 000496 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI--SPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQA 370 (1462)
Q Consensus 293 gvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~--~p~LIVvP~sll~qW~~E~~k~~P~l~vvvy~G~~~~ 370 (1462)
|+||++..|..+..+|||||||+|||++++.|+..++.... +|+|+++|.+++.+|.+|+..|+|++.++.|+|+.+.
T Consensus 303 Gln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~e~~~wap~~~vv~~~G~~k~ 382 (696)
T KOG0383|consen 303 GLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWEREFELWAPSFYVVPYPGTAKS 382 (696)
T ss_pred hhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCCchhccCCCcccccCCCCccc
Confidence 99999999999999999999999999999999999988653 5999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEecccccccCCcchHHHHH
Q 000496 371 RNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSS 450 (1462)
Q Consensus 371 R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEAHrlKN~~Sk~~~~ 450 (1462)
|.+++++++.+.+...+.. ......+.....+|+|.+++|+++..+...+..+.|.++|+||+||+||..|+++..
T Consensus 383 r~iirepe~s~ed~~~~~~----~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~livde~~rlkn~~s~~f~~ 458 (696)
T KOG0383|consen 383 RAIIREPEFSFEDSSIKSS----PKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLIVDEAHRLKNKQSKRFRV 458 (696)
T ss_pred hhhhhcccccccccccccC----CccccccchhhcccccCCCchhhcccCHHHHhhhhcceeEeechhhcccchhhhhhh
Confidence 9999999998877653322 223333455668999999999999999999999999999999999999999999999
Q ss_pred HHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhhhhhhHhhHhhcCCC
Q 000496 451 LKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPP 530 (1462)
Q Consensus 451 l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~p~~LRR~K~dV~~~LPp 530 (1462)
+..+...++++|||||+||++.|||++|+||.|+.|.+...|.+.|.++...+.+..||.++.|+|+||.|.||++.+|+
T Consensus 459 l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~ 538 (696)
T KOG0383|consen 459 LTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDISCEEQIKKLHLLLCPHMLRRLKLDVLKPMPL 538 (696)
T ss_pred ccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhhHHHHHHhhccccCchhhhhhhhhhccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHhhhchHH
Q 000496 531 KKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKL 610 (1462)
Q Consensus 531 k~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~~~~~~~~~li~~SgKl 610 (1462)
|.+.+++++|++.|+++|+.++++++..+.. ++...++.|++|+|||+|+|||+++..++...........++.+|+|+
T Consensus 539 Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~-~~~~~s~~n~~mel~K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~ 617 (696)
T KOG0383|consen 539 KTELIGRVELSPCQKKYYKKILTRNWQGLLA-GVHQYSLLNIVMELRKQCNHPYLSPLEEPLEENGEYLGSALIKASGKL 617 (696)
T ss_pred cceeEEEEecCHHHHHHHHHHHcCChHHHhh-cchhHHHHHHHHHHHHhhcCcccCccccccccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987 677889999999999999999999997777677777778999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccc
Q 000496 611 QLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLG 690 (1462)
Q Consensus 611 ~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~G 690 (1462)
.+|.+++++++..||||+||+||+.++|+|+++|...+ .|.||||..+..+||.+|++||++++..||||+||||||+|
T Consensus 618 ~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 618 TLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999998
No 8
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=3.7e-89 Score=797.02 Aligned_cols=457 Identities=45% Similarity=0.758 Sum_probs=410.7
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC--CCcEEEEEcchhHHHHHHH
Q 000496 274 YEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNWERE 351 (1462)
Q Consensus 274 ~~~~P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~--~~p~LIVvP~sll~qW~~E 351 (1462)
.-.||..+. ++|+.||+.|+|||..+|.+|.|||||||||||||+|+|++|++|.+.. .||||||+|.|+|+||..|
T Consensus 557 tV~qPkil~-ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqE 635 (1185)
T KOG0388|consen 557 TVPQPKILK-CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQE 635 (1185)
T ss_pred eccCchhhh-hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHH
Confidence 346788776 8999999999999999999999999999999999999999999998753 5799999999999999999
Q ss_pred HHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCccee
Q 000496 352 FATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQC 431 (1462)
Q Consensus 352 ~~k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~ 431 (1462)
|.+|+|.++++.|.|+...|.+++.+ +.+.. . -.....|||+||||+++..|...|.+++|.+
T Consensus 636 isrFlP~~k~lpywGs~~eRkiLrKf--w~rKn---m------------Y~rna~fhVviTSYQlvVtDeky~qkvKWQY 698 (1185)
T KOG0388|consen 636 ISRFLPSFKVLPYWGSPSERKILRKF--WNRKN---M------------YRRNAPFHVVITSYQLVVTDEKYLQKVKWQY 698 (1185)
T ss_pred HHHhCccceeecCcCChhhhHHHHHh--cchhh---h------------hccCCCceEEEEeeeeeechHHHHHhhhhhh
Confidence 99999999999999999999998874 21111 0 1234689999999999999999999999999
Q ss_pred EecccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhh----------hh
Q 000496 432 MIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI----------NQ 501 (1462)
Q Consensus 432 VIVDEAHrlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~----------~~ 501 (1462)
+|+|||+-||+..|..++.|..|+++.||||||||+||++.|||+||||++|..|.+..+|.+||..- -.
T Consensus 699 MILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tln 778 (1185)
T KOG0388|consen 699 MILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLN 778 (1185)
T ss_pred eehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999631 24
Q ss_pred HHHHHHHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhC
Q 000496 502 EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (1462)
Q Consensus 502 ~~~i~~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~ 581 (1462)
+.++.+||.+|+||||||.|+||...|..+.++.|.|.||.-|+.+|..|...... ..+.+++|+|||+||
T Consensus 779 eqqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~---------~E~~~~vmQlrKVCN 849 (1185)
T KOG0388|consen 779 EQQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISS---------MEMENLVMQLRKVCN 849 (1185)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhH---------HHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999998765431 233469999999999
Q ss_pred CcccccCCCCCcc-------------------------c-----------------------------------------
Q 000496 582 HPYMLEGVEPDIE-------------------------D----------------------------------------- 595 (1462)
Q Consensus 582 hP~L~~~~e~~~~-------------------------~----------------------------------------- 595 (1462)
||-||+..++... .
T Consensus 850 HPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~ 929 (1185)
T KOG0388|consen 850 HPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLS 929 (1185)
T ss_pred ChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccce
Confidence 9988754332100 0
Q ss_pred ------------ch------------------HH----------------------------------------------
Q 000496 596 ------------TN------------------ES---------------------------------------------- 599 (1462)
Q Consensus 596 ------------~~------------------~~---------------------------------------------- 599 (1462)
.. +.
T Consensus 930 ~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~ 1009 (1185)
T KOG0388|consen 930 LEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHI 1009 (1185)
T ss_pred eeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCc
Confidence 00 00
Q ss_pred ----------HHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHH
Q 000496 600 ----------FKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1462)
Q Consensus 600 ----------~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~ 669 (1462)
....+..|||+..|+.||.+|++.|||||+|.||+.|+|+|++||..+||.|.|+||+....+|..++.+
T Consensus 1010 pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrD 1089 (1185)
T KOG0388|consen 1010 PLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRD 1089 (1185)
T ss_pred ccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhh
Confidence 0001235999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCCCHHHHHHHHHHHH
Q 000496 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKK 749 (1462)
Q Consensus 670 Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~~~kK 749 (1462)
|++ ++.||||+||||||+||||++||||||||+||||..+.||++||||.||++.|+||||++++||||+|++++.+|
T Consensus 1090 wQ~--sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK 1167 (1185)
T KOG0388|consen 1090 WQA--SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQK 1167 (1185)
T ss_pred ccC--CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhH
Confidence 997 889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 000496 750 MVLEHLVVGR 759 (1462)
Q Consensus 750 ~~L~~~Vig~ 759 (1462)
....++|+.+
T Consensus 1168 ~~vQq~Vm~G 1177 (1185)
T KOG0388|consen 1168 DEVQQMVMHG 1177 (1185)
T ss_pred HHHHHHHHcC
Confidence 9999999843
No 9
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.6e-87 Score=799.68 Aligned_cols=487 Identities=37% Similarity=0.628 Sum_probs=415.4
Q ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC--CCcEEEEEcchhHHH
Q 000496 270 EFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRN 347 (1462)
Q Consensus 270 ~~~~~~~~P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~--~~p~LIVvP~sll~q 347 (1462)
.+...-..|.++. ..|+|||.+||+||..+++++.||||+||||||||||+|+||+.|++.+ .+|+|||||.+++.|
T Consensus 191 ~~~~~~~vPg~I~-~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~q 269 (923)
T KOG0387|consen 191 KLEGGFKVPGFIW-SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQ 269 (923)
T ss_pred cccccccccHHHH-HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHH
Confidence 3333334566665 5799999999999999999999999999999999999999999998763 369999999999999
Q ss_pred HHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCC
Q 000496 348 WEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI 427 (1462)
Q Consensus 348 W~~E~~k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i 427 (1462)
|.+||.+|+|.++|.+|||+...-. ++.+..... +. .. ........-+|+||||+.++.....+..+
T Consensus 270 W~~E~~~w~p~~rv~ilh~t~s~~r----~~~~~~~~~---~~----~~--L~r~~~~~~~ilitty~~~r~~~d~l~~~ 336 (923)
T KOG0387|consen 270 WMKEFQTWWPPFRVFILHGTGSGAR----YDASHSSHK---KD----KL--LIRKVATDGGILITTYDGFRIQGDDLLGI 336 (923)
T ss_pred HHHHHHHhCcceEEEEEecCCcccc----cccchhhhh---hh----hh--heeeecccCcEEEEehhhhcccCcccccc
Confidence 9999999999999999999876321 111100000 00 00 00112235579999999999999999999
Q ss_pred cceeEecccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh-------
Q 000496 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN------- 500 (1462)
Q Consensus 428 ~w~~VIVDEAHrlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~------- 500 (1462)
.|+++|+||+|+|||++|+++.+++.+.+.+|++|||||+|||+.|||+|+.|+.|+.+++...|.+.|...-
T Consensus 337 ~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaN 416 (923)
T KOG0387|consen 337 LWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYAN 416 (923)
T ss_pred cccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996421
Q ss_pred --------hHHHHHHHHHhhchhhhhhhHhhHhh-cCCCceeEEEeecCCHHHHHHHHHHHHHHH--HHHHhcCCchhhH
Q 000496 501 --------QEEQISRLHRMLAPHLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNY--QILTRRGGAQISL 569 (1462)
Q Consensus 501 --------~~~~i~~L~~lL~p~~LRR~K~dV~~-~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~--~~l~~~~~~~~~l 569 (1462)
.......|+.+|.||+|||+|+||.. .||.|.+++++|.||+.|+.+|..++.... .+++. ....
T Consensus 417 As~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng----~~~~ 492 (923)
T KOG0387|consen 417 ASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNG----KRNC 492 (923)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcC----Cccc
Confidence 12345679999999999999999998 999999999999999999999999986532 22221 2233
Q ss_pred HHHHHHHHHHhCCcccccCCC---CCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHH-
Q 000496 570 INVVMELRKLCCHPYMLEGVE---PDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT- 645 (1462)
Q Consensus 570 ~nil~~LRk~c~hP~L~~~~e---~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~- 645 (1462)
+.-+.-||++||||-|+..-. ...++. ...+..||||.+|.++|...+.+|+|||+|||...|||||+.+|.
T Consensus 493 l~Gi~iLrkICnHPdll~~~~~~~~~~~D~----~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~ 568 (923)
T KOG0387|consen 493 LSGIDILRKICNHPDLLDRRDEDEKQGPDY----EGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRR 568 (923)
T ss_pred eechHHHHhhcCCcccccCcccccccCCCc----CCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHh
Confidence 344566999999999997632 111111 255678999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCC
Q 000496 646 FKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1462)
Q Consensus 646 ~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k 725 (1462)
..||.|+|+||.|+...|+.+|++||++. ..+||||+|++||+|+||+.||.||||||+|||+.|.||..||+||||+|
T Consensus 569 ~~~ysylRmDGtT~~~~R~~lVd~Fne~~-s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkk 647 (923)
T KOG0387|consen 569 AKGYSYLRMDGTTPAALRQKLVDRFNEDE-SIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKK 647 (923)
T ss_pred cCCceEEEecCCCccchhhHHHHhhcCCC-ceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCcc
Confidence 79999999999999999999999999744 56789999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEecCCCHHHHHHHHHHHHHHHHHHHh-ccccccCCCHHHHHHHHHhhhh
Q 000496 726 KVMIFRLITRGSIEERMMQMTKKKMVLEHLVV-GRLKAQNINQEELDDIIRYGSK 779 (1462)
Q Consensus 726 ~V~VyrLvt~~TiEE~I~e~~~kK~~L~~~Vi-g~~~~~~~~~~el~~ll~~ga~ 779 (1462)
.|.||||++.|||||+||.++--|..|.+.++ +.....-+...+|.+++..+..
T Consensus 648 dV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~q~RfF~~~dl~dLFsl~~~ 702 (923)
T KOG0387|consen 648 DVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNPEQRRFFKGNDLHDLFSLKDF 702 (923)
T ss_pred ceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCHHHhhhcccccHHHHhCCCCC
Confidence 99999999999999999999999999999988 4445566788889999887653
No 10
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=8.4e-81 Score=763.99 Aligned_cols=465 Identities=38% Similarity=0.625 Sum_probs=404.3
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC--------CCCcEEEEEcchhHHHHHHHHHHH
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--------RISPHLVVAPLSTLRNWEREFATW 355 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~--------~~~p~LIVvP~sll~qW~~E~~k~ 355 (1462)
.+||.||.+|||||.++...+-+|||||+||||||+|+|++++.=... ..-|.|||||.++..+|..|+.+|
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHHHh
Confidence 579999999999999999999999999999999999999998753322 233899999999999999999999
Q ss_pred CCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEecc
Q 000496 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1462)
Q Consensus 356 ~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVD 435 (1462)
+|.++|+.|.|....|..++.. ..+.+|+||||+.+++|...|.++.|.|+|+|
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q--------------------------~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLD 1107 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQ--------------------------YKNANIIVTSYDVVRNDVDYLIKIDWNYCVLD 1107 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhh--------------------------ccccceEEeeHHHHHHHHHHHHhcccceEEec
Confidence 9999999999999999877653 23568999999999999999999999999999
Q ss_pred cccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhh---------------h
Q 000496 436 EGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---------------N 500 (1462)
Q Consensus 436 EAHrlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~---------------~ 500 (1462)
|+|-|||..++++++++.+.++|||+|||||+|||+.|||+|++||+|+.+++-..|.++|... .
T Consensus 1108 EGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~Ea 1187 (1549)
T KOG0392|consen 1108 EGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEA 1187 (1549)
T ss_pred CcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999642 1
Q ss_pred hHHHHHHHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHh-------cCC-chhhHHHH
Q 000496 501 QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTR-------RGG-AQISLINV 572 (1462)
Q Consensus 501 ~~~~i~~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~-------~~~-~~~~l~ni 572 (1462)
..-.++.||+.+-||||||+|.||+++||||..+-.+|+|++.|+++|+.+..+....... ..+ .....+..
T Consensus 1188 G~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqa 1267 (1549)
T KOG0392|consen 1188 GVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQA 1267 (1549)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHH
Confidence 1245788999999999999999999999999999999999999999999998873222211 111 14567788
Q ss_pred HHHHHHHhCCcccccCC-CCCcccchHH----H--HHHhhhchHHHHHHHHHHHHH--------------HcCCeEEEEe
Q 000496 573 VMELRKLCCHPYMLEGV-EPDIEDTNES----F--KQLLESSGKLQLLDKMMVKLK--------------EQGHRVLIYS 631 (1462)
Q Consensus 573 l~~LRk~c~hP~L~~~~-e~~~~~~~~~----~--~~li~~SgKl~~L~klL~~l~--------------~~g~KVLIFS 631 (1462)
+..|||.|+||.|.-.. -++....... . -+-+..|+|+.+|..+|...- -.+||+||||
T Consensus 1268 LqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFc 1347 (1549)
T KOG0392|consen 1268 LQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFC 1347 (1549)
T ss_pred HHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEee
Confidence 99999999999988553 1221111111 1 122678999999999998762 1479999999
Q ss_pred cchhhHHHHHHHHHhc---CCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCCh
Q 000496 632 QFQHMLDLLEDYLTFK---KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNP 708 (1462)
Q Consensus 632 q~~~~ldiLed~L~~~---gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP 708 (1462)
|+..|+|++++-|-.. .+.|.|+||++++.+|++++.+||.+++-. |+|++|.+||+|+||+.||||||++.||||
T Consensus 1348 QlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptID-vLlLTThVGGLGLNLTGADTVVFvEHDWNP 1426 (1549)
T KOG0392|consen 1348 QLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTID-VLLLTTHVGGLGLNLTGADTVVFVEHDWNP 1426 (1549)
T ss_pred eHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCcee-EEEEeeeccccccccCCCceEEEEecCCCc
Confidence 9999999999988554 567899999999999999999999977654 599999999999999999999999999999
Q ss_pred hhHHHHHhhhhccCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhccccc--cCCCHHHHHHHHH
Q 000496 709 HADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKA--QNINQEELDDIIR 775 (1462)
Q Consensus 709 ~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~~~kK~~L~~~Vig~~~~--~~~~~~el~~ll~ 775 (1462)
.+|+|||+|||||||+|.|+||||||+||+||+|+-.++-||..++.|++.-++ ..++-++|.+++.
T Consensus 1427 MrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNasl~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1427 MRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNASLETMDTDQLLDLFT 1495 (1549)
T ss_pred hhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhcccccccccCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999966433 4567777777765
No 11
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=1.8e-69 Score=667.47 Aligned_cols=452 Identities=36% Similarity=0.563 Sum_probs=381.4
Q ss_pred CCCCHHHHHHHHHHHHhhc------cCCcEEEEecCCCchHHHHHHHHHHHHhCCC------CcEEEEEcchhHHHHHHH
Q 000496 284 GSLHPYQLEGLNFLRFSWS------KQTHVILADEMGLGKTIQSIAFLASLFGERI------SPHLVVAPLSTLRNWERE 351 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~------~~~~~ILADemGLGKTiqaIa~l~~L~~~~~------~p~LIVvP~sll~qW~~E 351 (1462)
..|||||.+|++||..+.. ..+|||+||+||+|||+|+|+||..+....+ ...|||||.+++.||.+|
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkkE 316 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKKE 316 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHHH
Confidence 5799999999999977664 4578999999999999999999999987643 478999999999999999
Q ss_pred HHHHCC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcc
Q 000496 352 FATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (1462)
Q Consensus 352 ~~k~~P--~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w 429 (1462)
|.+|.. .+....++|...+ ..+....+..-. ......-|++.||++++.....+....+
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~~~------------------~~~~~~~vli~sye~~~~~~~~il~~~~ 377 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKS-SWIKLKSILFLG------------------YKQFTTPVLIISYETASDYCRKILLIRP 377 (776)
T ss_pred HHHhccccccceeeeecccch-hhhhhHHHHHhh------------------hhheeEEEEeccHHHHHHHHHHHhcCCC
Confidence 999985 5777888887765 111111111000 0123456999999999998889999999
Q ss_pred eeEecccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh---------
Q 000496 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN--------- 500 (1462)
Q Consensus 430 ~~VIVDEAHrlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~--------- 500 (1462)
++||+||+|++||..|.++++|..+.+++|++|||||+||++.|+|++|+|..|+.+++...|...|....
T Consensus 378 glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s 457 (776)
T KOG0390|consen 378 GLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADAS 457 (776)
T ss_pred CeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999885321
Q ss_pred -----hHHHHHHHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHH
Q 000496 501 -----QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVME 575 (1462)
Q Consensus 501 -----~~~~i~~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~ 575 (1462)
.++.++.|..+...|++||+-..+.+.||++.+++|.|.+|+.|+.+|+.++... ......+ ..+..+..
T Consensus 458 ~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~~~~~----~~l~~~~~ 532 (776)
T KOG0390|consen 458 EEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KMRTLKG----YALELITK 532 (776)
T ss_pred hhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hhhhhhc----chhhHHHH
Confidence 1344888999999999999999999999999999999999999999999998864 1111111 14566778
Q ss_pred HHHHhCCcccccCCCCC-----cccchHHH--------HHHhhhchHHHHHHHHHHHHHHc-CCeEEEEecchhhHHHHH
Q 000496 576 LRKLCCHPYMLEGVEPD-----IEDTNESF--------KQLLESSGKLQLLDKMMVKLKEQ-GHRVLIYSQFQHMLDLLE 641 (1462)
Q Consensus 576 LRk~c~hP~L~~~~e~~-----~~~~~~~~--------~~li~~SgKl~~L~klL~~l~~~-g~KVLIFSq~~~~ldiLe 641 (1462)
|+++|+||.|+...+.. ........ ..-...|+|+..|..|+....+. -.++++.++++.++++++
T Consensus 533 L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e 612 (776)
T KOG0390|consen 533 LKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFE 612 (776)
T ss_pred HHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHH
Confidence 99999999998522111 10111000 01122489999999998666553 346666677889999999
Q ss_pred HHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhcc
Q 000496 642 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1462)
Q Consensus 642 d~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRi 721 (1462)
..++.+|+.++++||+++..+|+.+|+.||++.+..||||+|++|||+||||..|++||+||++|||+++.|||+||+|.
T Consensus 613 ~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~Rd 692 (776)
T KOG0390|consen 613 QLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRD 692 (776)
T ss_pred HHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcc
Q 000496 722 GQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGR 759 (1462)
Q Consensus 722 GQ~k~V~VyrLvt~~TiEE~I~e~~~kK~~L~~~Vig~ 759 (1462)
||+|+|+||||++.||+||+|++++..|..|-..|++.
T Consensus 693 GQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~ 730 (776)
T KOG0390|consen 693 GQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDE 730 (776)
T ss_pred CCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEec
Confidence 99999999999999999999999999999999999854
No 12
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=2.1e-65 Score=611.14 Aligned_cols=470 Identities=33% Similarity=0.517 Sum_probs=381.7
Q ss_pred CCCCHHHHHHHHHHHHhh---------ccCCcEEEEecCCCchHHHHHHHHHHHHhC---CCCcEEEEEcchhHHHHHHH
Q 000496 284 GSLHPYQLEGLNFLRFSW---------SKQTHVILADEMGLGKTIQSIAFLASLFGE---RISPHLVVAPLSTLRNWERE 351 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~---------~~~~~~ILADemGLGKTiqaIa~l~~L~~~---~~~p~LIVvP~sll~qW~~E 351 (1462)
..|+|||+.||.||+.+. ..|.|||||+-||||||+|+|+|++.++.. +...+|||||++++.||.+|
T Consensus 667 ~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~E 746 (1567)
T KOG1015|consen 667 IKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNE 746 (1567)
T ss_pred hhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHH
Confidence 479999999999996544 358899999999999999999999987643 45699999999999999999
Q ss_pred HHHHCCCCe------EEEEEcCh--hHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--
Q 000496 352 FATWAPQMN------VVMYVGTS--QARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS-- 421 (1462)
Q Consensus 352 ~~k~~P~l~------vvvy~G~~--~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~-- 421 (1462)
|++|.+++. |..+...+ ..|..... .|+ ..-.|+|+-|++++.-.
T Consensus 747 FekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~-~W~------------------------~~ggVmIiGYdmyRnLa~g 801 (1567)
T KOG1015|consen 747 FEKWMEGLEDDEKLEVSELATVKRPEERSYMLQ-RWQ------------------------EDGGVMIIGYDMYRNLAQG 801 (1567)
T ss_pred HHHhcccccccccceeehhhhccChHHHHHHHH-HHH------------------------hcCCEEEEehHHHHHHhcc
Confidence 999998632 22222211 12211111 110 12259999999986531
Q ss_pred -------------cccCCCcceeEecccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCC
Q 000496 422 -------------ASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGS 488 (1462)
Q Consensus 422 -------------~~L~~i~w~~VIVDEAHrlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~ 488 (1462)
..|..-..++||+||||-|||..+.+++++..+.+++||+|||||||||+.|++.+++|+.|+.+++
T Consensus 802 r~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs 881 (1567)
T KOG1015|consen 802 RNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGS 881 (1567)
T ss_pred cchhhhHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccC
Confidence 1222335689999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhh---------------HHHHHHHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHH
Q 000496 489 LEEFQEEFKDINQ---------------EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILT 553 (1462)
Q Consensus 489 ~~~F~e~f~~~~~---------------~~~i~~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~ 553 (1462)
..+|..+|.+..+ .....-|+.+|..++-|+--..+.+.|||+.+++|.|.||+.|..+|..+++
T Consensus 882 ~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~ 961 (1567)
T KOG1015|consen 882 IKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLD 961 (1567)
T ss_pred cHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHh
Confidence 9999999965321 1234568899999999999999999999999999999999999999999988
Q ss_pred HHHHHHH---hcCCchhhHHHHHHHHHHHhCCcccccC------------------CC-CCc------------------
Q 000496 554 RNYQILT---RRGGAQISLINVVMELRKLCCHPYMLEG------------------VE-PDI------------------ 593 (1462)
Q Consensus 554 k~~~~l~---~~~~~~~~l~nil~~LRk~c~hP~L~~~------------------~e-~~~------------------ 593 (1462)
.....-+ .+.+....|+.-+..|+++.+||+.+.- .. +..
T Consensus 962 h~~~~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks 1041 (1567)
T KOG1015|consen 962 HLTGVGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKS 1041 (1567)
T ss_pred hccccCCccccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccc
Confidence 3222211 1223455788888899999999986410 00 000
Q ss_pred -------------------------------------------cc-------------------chHHHHHH--------
Q 000496 594 -------------------------------------------ED-------------------TNESFKQL-------- 603 (1462)
Q Consensus 594 -------------------------------------------~~-------------------~~~~~~~l-------- 603 (1462)
.+ +.+++..+
T Consensus 1042 ~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v 1121 (1567)
T KOG1015|consen 1042 GKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEV 1121 (1567)
T ss_pred cccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhh
Confidence 00 00111111
Q ss_pred hhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHh----------------------cCCeEEEEecCCCHH
Q 000496 604 LESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----------------------KKWQYERIDGKVGGA 661 (1462)
Q Consensus 604 i~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~----------------------~gi~~~rIdGst~~~ 661 (1462)
+..||||.+|.+||....+-|.|+|||||....||+|++||.. +|..|.||||++...
T Consensus 1122 ~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~ 1201 (1567)
T KOG1015|consen 1122 LEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQ 1201 (1567)
T ss_pred hhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHH
Confidence 3359999999999999999999999999999999999999953 366799999999999
Q ss_pred HHHHHHHHHhccCCCC-ceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCCCHHH
Q 000496 662 ERQIRIDRFNAKNSSR-FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1462)
Q Consensus 662 eRq~~Id~Fn~~~s~~-fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE 740 (1462)
+|++..++||.+..-+ .+||||||||++||||-+|+.|||||-.|||.-+.|+|-|++|+||+|+|+||||++.||+|+
T Consensus 1202 ~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEe 1281 (1567)
T KOG1015|consen 1202 SRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEE 1281 (1567)
T ss_pred HHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHH
Confidence 9999999999876643 479999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccc-ccCCCHHHHHHHHHhhh
Q 000496 741 RMMQMTKKKMVLEHLVVGRLK-AQNINQEELDDIIRYGS 778 (1462)
Q Consensus 741 ~I~e~~~kK~~L~~~Vig~~~-~~~~~~~el~~ll~~ga 778 (1462)
+||.++-.|..+...|+++.. ...++.++|..|..|-.
T Consensus 1282 KIYkRQVTKqsls~RVVDeqQv~Rhy~~neLteLy~fep 1320 (1567)
T KOG1015|consen 1282 KIYKRQVTKQSLSFRVVDEQQVERHYTMNELTELYTFEP 1320 (1567)
T ss_pred HHHHHHHhHhhhhhhhhhHHHHHHHhhHhhhHHHhhcCC
Confidence 999999999999999997653 34578889988877653
No 13
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-63 Score=566.72 Aligned_cols=467 Identities=30% Similarity=0.500 Sum_probs=376.9
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHhhc-cCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHH
Q 000496 275 EHSPEFLSGGSLHPYQLEGLNFLRFSWS-KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (1462)
Q Consensus 275 ~~~P~~~~g~~LrpyQlegvnwL~~~~~-~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~ 353 (1462)
.+||..+. ..|.|||++|+.|+...-. .-.|||||||||+|||||+|+++.. .-...|+|||||.-.+.||.+||.
T Consensus 175 aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla--e~~ra~tLVvaP~VAlmQW~nEI~ 251 (791)
T KOG1002|consen 175 AEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA--EVDRAPTLVVAPTVALMQWKNEIE 251 (791)
T ss_pred ccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh--ccccCCeeEEccHHHHHHHHHHHH
Confidence 45666665 6799999999999965443 6789999999999999999999887 333459999999999999999999
Q ss_pred HHCC-CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh------------
Q 000496 354 TWAP-QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD------------ 420 (1462)
Q Consensus 354 k~~P-~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d------------ 420 (1462)
+++. .+++.+|||.+..... . ....||||+|||..+...
T Consensus 252 ~~T~gslkv~~YhG~~R~~ni-k---------------------------el~~YDvVLTty~vvEs~yRk~~~GfrrKn 303 (791)
T KOG1002|consen 252 RHTSGSLKVYIYHGAKRDKNI-K---------------------------ELMNYDVVLTTYAVVESVYRKQDYGFRRKN 303 (791)
T ss_pred HhccCceEEEEEecccccCCH-H---------------------------HhhcCcEEEEecHHHHHHHHhccccccccC
Confidence 9984 5889999998755331 1 236899999999988432
Q ss_pred -----hcccCCCcceeEecccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChH-----
Q 000496 421 -----SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLE----- 490 (1462)
Q Consensus 421 -----~~~L~~i~w~~VIVDEAHrlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~----- 490 (1462)
.+.|..++|..||+||||.||+..|...+++..+.+.+||+|||||+||.+.|||+|+.||..++|..+-
T Consensus 304 gv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cd 383 (791)
T KOG1002|consen 304 GVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCD 383 (791)
T ss_pred CcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhcc
Confidence 3457789999999999999999999999999999999999999999999999999999999988864220
Q ss_pred ----H--HH-------------HH---Hhh------------hhhHHHHHHHHHhhchhhhhhhHhhHhh--cCCCceeE
Q 000496 491 ----E--FQ-------------EE---FKD------------INQEEQISRLHRMLAPHLLRRVKKDVMK--ELPPKKEL 534 (1462)
Q Consensus 491 ----~--F~-------------e~---f~~------------~~~~~~i~~L~~lL~p~~LRR~K~dV~~--~LPpk~e~ 534 (1462)
+ |. .. |.. -.........|.+|+.+|+||+|-.-.. .|||....
T Consensus 384 c~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~ 463 (791)
T KOG1002|consen 384 CASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVT 463 (791)
T ss_pred ccccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCcccee
Confidence 0 00 00 000 0112445578899999999999854332 58999888
Q ss_pred EEeecCCHHHHHHHHHHHHHHHHHHHhc------CCchhhHHHHHHHHHHHhCCcccccCCC------------------
Q 000496 535 ILRVELSSKQKEYYKAILTRNYQILTRR------GGAQISLINVVMELRKLCCHPYMLEGVE------------------ 590 (1462)
Q Consensus 535 iv~v~ls~~Qk~~Y~~il~k~~~~l~~~------~~~~~~l~nil~~LRk~c~hP~L~~~~e------------------ 590 (1462)
+-+=-++..+..+|+.+.......++.- -.+..+++.++.+||++..||+|.-...
T Consensus 464 vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~ 543 (791)
T KOG1002|consen 464 VRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCH 543 (791)
T ss_pred eehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccC
Confidence 8778899999999999987654444321 2345678888999999999999863210
Q ss_pred ----CCcccc---------------------------------------------hHHH------H----HHhhhchHHH
Q 000496 591 ----PDIEDT---------------------------------------------NESF------K----QLLESSGKLQ 611 (1462)
Q Consensus 591 ----~~~~~~---------------------------------------------~~~~------~----~li~~SgKl~ 611 (1462)
+.+... ...+ . .-..+|.|+.
T Consensus 544 d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIE 623 (791)
T KOG1002|consen 544 DPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIE 623 (791)
T ss_pred ChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHH
Confidence 000000 0000 0 0134688999
Q ss_pred HHHHHHHHHHHcC--CeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeecccccc
Q 000496 612 LLDKMMVKLKEQG--HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGL 689 (1462)
Q Consensus 612 ~L~klL~~l~~~g--~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~ 689 (1462)
+|.+-|..+.++. -|.||||||+.|||+|.-.|...|+..+.+.|+|+...|..+|+.|.++... .|||+|.+|||+
T Consensus 624 AL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c-~vfLvSLkAGGV 702 (791)
T KOG1002|consen 624 ALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDC-RVFLVSLKAGGV 702 (791)
T ss_pred HHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCe-EEEEEEeccCce
Confidence 9999999888765 4899999999999999999999999999999999999999999999875544 569999999999
Q ss_pred ccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhccccc--cCCCH
Q 000496 690 GINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKA--QNINQ 767 (1462)
Q Consensus 690 GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~~~kK~~L~~~Vig~~~~--~~~~~ 767 (1462)
.+||+.|++|+++||||||+...||++|+|||||.++|.|.||+.++|||++|++.+++|..+.+.-+|.... ..++.
T Consensus 703 ALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~Ai~kLt~ 782 (791)
T KOG1002|consen 703 ALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEEAISKLTE 782 (791)
T ss_pred EeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHHHHHhcCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876421 24555
Q ss_pred HHHHHH
Q 000496 768 EELDDI 773 (1462)
Q Consensus 768 ~el~~l 773 (1462)
++|.-|
T Consensus 783 eDmqfL 788 (791)
T KOG1002|consen 783 EDMQFL 788 (791)
T ss_pred HHHHHH
Confidence 665544
No 14
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.8e-63 Score=585.22 Aligned_cols=473 Identities=29% Similarity=0.510 Sum_probs=388.3
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHhh-ccCCcEEEEecCCCchHHHHHHHHHHHHhC-----C----CCcEEEEEc
Q 000496 272 QQYEHSPEFLSGGSLHPYQLEGLNFLRFSW-SKQTHVILADEMGLGKTIQSIAFLASLFGE-----R----ISPHLVVAP 341 (1462)
Q Consensus 272 ~~~~~~P~~~~g~~LrpyQlegvnwL~~~~-~~~~~~ILADemGLGKTiqaIa~l~~L~~~-----~----~~p~LIVvP 341 (1462)
+.+.+.|..+. ..|.|||..|+.||.-.- ..+.||||||+||||||++.|+++.+-... + ..++|||||
T Consensus 313 t~lte~P~g~~-v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P 391 (901)
T KOG4439|consen 313 TDLTETPDGLK-VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP 391 (901)
T ss_pred ccccCCCCcce-eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc
Confidence 33455565554 689999999999995433 347789999999999999999999876531 1 127999999
Q ss_pred chhHHHHHHHHHHHCC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh
Q 000496 342 LSTLRNWEREFATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL 419 (1462)
Q Consensus 342 ~sll~qW~~E~~k~~P--~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~ 419 (1462)
.|+++||..|+++-.. .+.|.+|||... |.+ .. ....+||||||||..+..
T Consensus 392 aSli~qW~~Ev~~rl~~n~LsV~~~HG~n~-r~i-~~-------------------------~~L~~YDvViTTY~lva~ 444 (901)
T KOG4439|consen 392 ASLIHQWEAEVARRLEQNALSVYLYHGPNK-REI-SA-------------------------KELRKYDVVITTYNLVAN 444 (901)
T ss_pred HHHHHHHHHHHHHHHhhcceEEEEecCCcc-ccC-CH-------------------------HHHhhcceEEEeeecccc
Confidence 9999999999987663 478999999874 221 11 123589999999999866
Q ss_pred ----------hhcccCCCcceeEecccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCCh
Q 000496 420 ----------DSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSL 489 (1462)
Q Consensus 420 ----------d~~~L~~i~w~~VIVDEAHrlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~ 489 (1462)
....|..|.|.+||+||||.+||..++.+.++..+++..||+|||||+||++-|+|+|+.||....|++.
T Consensus 445 ~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~ 524 (901)
T KOG4439|consen 445 KPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDL 524 (901)
T ss_pred CCchhhhcccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchH
Confidence 2456788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhchhhhhhhHhhHhh-----cCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHh---
Q 000496 490 EEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMK-----ELPPKKELILRVELSSKQKEYYKAILTRNYQILTR--- 561 (1462)
Q Consensus 490 ~~F~e~f~~~~~~~~i~~L~~lL~p~~LRR~K~dV~~-----~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~--- 561 (1462)
..|.++..... ...-.++.-+.++.||||+|...-. .||+++..++.++|+..+...|.-+.+....++.+
T Consensus 525 ~~Wke~i~~~s-~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~ 603 (901)
T KOG4439|consen 525 KQWKENIDNMS-KGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLL 603 (901)
T ss_pred HHHHHhccCcc-ccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHH
Confidence 88888775332 2344566667789999999988765 79999999999999999999999887765554422
Q ss_pred -------cCC--------------------------------chhhHHHHHHHHHHHhCCcccccCCCCCcc-------c
Q 000496 562 -------RGG--------------------------------AQISLINVVMELRKLCCHPYMLEGVEPDIE-------D 595 (1462)
Q Consensus 562 -------~~~--------------------------------~~~~l~nil~~LRk~c~hP~L~~~~e~~~~-------~ 595 (1462)
.++ ....++.++++||++|+||-+.....+... .
T Consensus 604 ~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~ 683 (901)
T KOG4439|consen 604 QREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDD 683 (901)
T ss_pred hhhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcch
Confidence 000 001257788999999999966543321100 0
Q ss_pred ---------------------------------chHHHHHHhhhchHHHHHHHHHHHH-HHcCCeEEEEecchhhHHHHH
Q 000496 596 ---------------------------------TNESFKQLLESSGKLQLLDKMMVKL-KEQGHRVLIYSQFQHMLDLLE 641 (1462)
Q Consensus 596 ---------------------------------~~~~~~~li~~SgKl~~L~klL~~l-~~~g~KVLIFSq~~~~ldiLe 641 (1462)
....+-.....|.|+..+...+..+ .....|++|.||++.+|+++.
T Consensus 684 sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~ 763 (901)
T KOG4439|consen 684 SDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVR 763 (901)
T ss_pred hhhhhhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHH
Confidence 0011112234688999988888887 667899999999999999999
Q ss_pred HHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhcc
Q 000496 642 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1462)
Q Consensus 642 d~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRi 721 (1462)
..|...|+.|..|+|.+...+|+.+++.||....+..|.|||..|||+||||+.|+|+|++|..|||+...||.+|++|+
T Consensus 764 ~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~ 843 (901)
T KOG4439|consen 764 KHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRM 843 (901)
T ss_pred HHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcccc---ccCCCHHHHHHH
Q 000496 722 GQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK---AQNINQEELDDI 773 (1462)
Q Consensus 722 GQ~k~V~VyrLvt~~TiEE~I~e~~~kK~~L~~~Vig~~~---~~~~~~~el~~l 773 (1462)
||+|.|.||||+++||||++|...+.+|+.|+..|+.+.. ...++..+|..|
T Consensus 844 GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~adlk~L 898 (901)
T KOG4439|consen 844 GQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLADLKKL 898 (901)
T ss_pred cccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccccccccccHHHHHHH
Confidence 9999999999999999999999999999999999985432 234555555554
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=5.4e-63 Score=653.95 Aligned_cols=472 Identities=43% Similarity=0.722 Sum_probs=409.8
Q ss_pred CCCCCCHHHHHHHHHHH-HhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC---CCcEEEEEcchhHHHHHHHHHHHCC
Q 000496 282 SGGSLHPYQLEGLNFLR-FSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLRNWEREFATWAP 357 (1462)
Q Consensus 282 ~g~~LrpyQlegvnwL~-~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~---~~p~LIVvP~sll~qW~~E~~k~~P 357 (1462)
...+|+|||++|++||. ..+..+.+|||||+||+|||+|+|+++.+++... .+|+|||||.+++.||.+|+.+|.|
T Consensus 335 ~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~~~ 414 (866)
T COG0553 335 LSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFAP 414 (866)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhhCc
Confidence 34789999999999999 8889999999999999999999999999865542 3599999999999999999999999
Q ss_pred CCe-EEEEEcChhH----HHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh---hhcccCCCcc
Q 000496 358 QMN-VVMYVGTSQA----RNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL---DSASLKPIKW 429 (1462)
Q Consensus 358 ~l~-vvvy~G~~~~----R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~---d~~~L~~i~w 429 (1462)
.++ +.+++|.... +..+....... . ...|++++|||+.+.. +...+..+.|
T Consensus 415 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------------------~--~~~~~v~itty~~l~~~~~~~~~l~~~~~ 473 (866)
T COG0553 415 DLRLVLVYHGEKSELDKKREALRDLLKLH-------------------L--VIIFDVVITTYELLRRFLVDHGGLKKIEW 473 (866)
T ss_pred cccceeeeeCCcccccHHHHHHHHHhhhc-------------------c--cceeeEEechHHHHHHhhhhHHHHhhcee
Confidence 999 9999998863 44443321100 0 2358999999999999 9999999999
Q ss_pred eeEecccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHH-hhcCCCCC-ChHHHHHHHhhhh-------
Q 000496 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH-FLDAGKFG-SLEEFQEEFKDIN------- 500 (1462)
Q Consensus 430 ~~VIVDEAHrlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~-fL~p~~f~-~~~~F~e~f~~~~------- 500 (1462)
+++|+||||++||..+..++++..+++.++++|||||++|++.|||++++ |+.|..++ +...|..+|....
T Consensus 474 ~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~ 553 (866)
T COG0553 474 DRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIG 553 (866)
T ss_pred eeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999 99999999 5688999986432
Q ss_pred ----hHHHHHHHHHhhchhhhhhhHhh--HhhcCCCceeEEEeecCCHHHHHHHHHHHH---HHHHHHHhc--CC-----
Q 000496 501 ----QEEQISRLHRMLAPHLLRRVKKD--VMKELPPKKELILRVELSSKQKEYYKAILT---RNYQILTRR--GG----- 564 (1462)
Q Consensus 501 ----~~~~i~~L~~lL~p~~LRR~K~d--V~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~---k~~~~l~~~--~~----- 564 (1462)
....+..|+.++.||++||+|.+ +...||++.+.++.|+|+..|+.+|...+. ++...+... ..
T Consensus 554 ~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (866)
T COG0553 554 PLEARELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENR 633 (866)
T ss_pred chhhHHHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 12344558899999999999999 899999999999999999999999999999 666655442 11
Q ss_pred ---chhhHHHHHHHHHHHhCCcccccCC-CCCccc----------chHHHHHHhhhc-hHHHHHHHHH-HHHHHcCC--e
Q 000496 565 ---AQISLINVVMELRKLCCHPYMLEGV-EPDIED----------TNESFKQLLESS-GKLQLLDKMM-VKLKEQGH--R 626 (1462)
Q Consensus 565 ---~~~~l~nil~~LRk~c~hP~L~~~~-e~~~~~----------~~~~~~~li~~S-gKl~~L~klL-~~l~~~g~--K 626 (1462)
....+++.++.||++|+||.++... +..... .......++..| +|+..+.++| ..++..|+ |
T Consensus 634 ~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~k 713 (866)
T COG0553 634 IGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHK 713 (866)
T ss_pred ccchhhHHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhccccc
Confidence 1667899999999999999998765 221111 111123456778 9999999999 89999999 9
Q ss_pred EEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCC
Q 000496 627 VLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW 706 (1462)
Q Consensus 627 VLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dW 706 (1462)
||||+||+.++++|+++|...++.|++++|+++...|+.+|++||++ ...+|||+|++|||.||||+.|++||+||++|
T Consensus 714 vlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~w 792 (866)
T COG0553 714 VLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPWW 792 (866)
T ss_pred EEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEecccc
Confidence 99999999999999999999999999999999999999999999987 56678999999999999999999999999999
Q ss_pred ChhhHHHHHhhhhccCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcc-c--cccCCCHHHHHHHHH
Q 000496 707 NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGR-L--KAQNINQEELDDIIR 775 (1462)
Q Consensus 707 NP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~~~kK~~L~~~Vig~-~--~~~~~~~~el~~ll~ 775 (1462)
||+.+.||++|+|||||++.|.||+|++++|+||+|++++..|+.+...+++. . ....++.+++..++.
T Consensus 793 np~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 864 (866)
T COG0553 793 NPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEGEKELSKLSIEDLLDLFS 864 (866)
T ss_pred ChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhhhcccchhhccHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999874 2 223456666666654
No 16
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1e-54 Score=510.91 Aligned_cols=469 Identities=32% Similarity=0.518 Sum_probs=371.9
Q ss_pred CCCCHHHHHHHHHHH---------HhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC-CCcEEEEEcchhHHHHHHHHH
Q 000496 284 GSLHPYQLEGLNFLR---------FSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFA 353 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~---------~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~-~~p~LIVvP~sll~qW~~E~~ 353 (1462)
..|+|||+-|+.||. +.-+.|-|||||+.||||||+|+|+|+..+++.. .+.+|+|||-.+|.||..||.
T Consensus 253 ~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPiNTlQNWlsEfn 332 (1387)
T KOG1016|consen 253 HVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPINTLQNWLSEFN 332 (1387)
T ss_pred hhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCccceEEEEEehHHHHHHHHHhh
Confidence 369999999999983 2335688999999999999999999998887654 459999999999999999999
Q ss_pred HHCCCC-----------eEEEEEcChh---HHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh
Q 000496 354 TWAPQM-----------NVVMYVGTSQ---ARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL 419 (1462)
Q Consensus 354 k~~P~l-----------~vvvy~G~~~---~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~ 419 (1462)
.|.|.+ .|.++....+ .|..+... | ...-.|+++-|++++.
T Consensus 333 mWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~-W------------------------v~~GGVlLvGYemfRL 387 (1387)
T KOG1016|consen 333 MWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQ-W------------------------VQTGGVLLVGYEMFRL 387 (1387)
T ss_pred hhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHH-H------------------------hccCCEEEehHHHHHH
Confidence 999862 2333322111 12211110 0 0122477888887643
Q ss_pred h--------------------------------------hcccCCCcceeEecccccccCCcchHHHHHHHhccccceEe
Q 000496 420 D--------------------------------------SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVL 461 (1462)
Q Consensus 420 d--------------------------------------~~~L~~i~w~~VIVDEAHrlKN~~Sk~~~~l~~l~~~~rLL 461 (1462)
- ...|-.-.-++||+||+|||||..+.++.+|+.+++++|+.
T Consensus 388 L~lk~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiV 467 (1387)
T KOG1016|consen 388 LILKTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIV 467 (1387)
T ss_pred HHHhcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEE
Confidence 2 11122223589999999999999999999999999999999
Q ss_pred eccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhh---------------HHHHHHHHHhhchhhhhhhHhhHhh
Q 000496 462 LTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ---------------EEQISRLHRMLAPHLLRRVKKDVMK 526 (1462)
Q Consensus 462 LTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~---------------~~~i~~L~~lL~p~~LRR~K~dV~~ 526 (1462)
|||-|+|||+-|+|.++.|+.|+.+++..+|...|...-. ......||.+|..|+-||+..-+.+
T Consensus 468 LTGYPLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~ 547 (1387)
T KOG1016|consen 468 LTGYPLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKK 547 (1387)
T ss_pred EeccccccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhh
Confidence 9999999999999999999999999999999999964211 1234579999999999999999989
Q ss_pred cCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC------------------
Q 000496 527 ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG------------------ 588 (1462)
Q Consensus 527 ~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~------------------ 588 (1462)
.||.+.|+++.|.||..|+++|+.++......+...+....+-+..+.-..|+-|||-.+-.
T Consensus 548 ~LP~k~EyViLvr~s~iQR~LY~~Fm~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~ 627 (1387)
T KOG1016|consen 548 ILPEKKEYVILVRKSQIQRQLYRNFMLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEM 627 (1387)
T ss_pred hcccccceEEEEeHHHHHHHHHHHHHHHHHHhhccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHH
Confidence 99999999999999999999999988655544433332222222333333444478753200
Q ss_pred ----------------CCCC--------------------------------cccchHH--------HHHHhhhchHHHH
Q 000496 589 ----------------VEPD--------------------------------IEDTNES--------FKQLLESSGKLQL 612 (1462)
Q Consensus 589 ----------------~e~~--------------------------------~~~~~~~--------~~~li~~SgKl~~ 612 (1462)
..+. +....+. ...++..+.|+.+
T Consensus 628 ~~ag~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~ 707 (1387)
T KOG1016|consen 628 KFAGLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVI 707 (1387)
T ss_pred hhhcccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEE
Confidence 0000 0000000 1223556788888
Q ss_pred HHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcC------------------CeEEEEecCCCHHHHHHHHHHHhccC
Q 000496 613 LDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK------------------WQYERIDGKVGGAERQIRIDRFNAKN 674 (1462)
Q Consensus 613 L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~g------------------i~~~rIdGst~~~eRq~~Id~Fn~~~ 674 (1462)
+.+++..-..-|.|+|||||....||+|+++|..+. ..|.|++|.++..+|+++|++||.+.
T Consensus 708 ~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~ 787 (1387)
T KOG1016|consen 708 SLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEP 787 (1387)
T ss_pred EEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCC
Confidence 888888888889999999999999999999997643 45899999999999999999999988
Q ss_pred CCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHH
Q 000496 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEH 754 (1462)
Q Consensus 675 s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~~~kK~~L~~ 754 (1462)
+-...||||||||..||||-+|+.+||||.-|||..+.||..|++|.||+|++.|||||..+|+|.+|+.|+-.|.++.+
T Consensus 788 ~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsd 867 (1387)
T KOG1016|consen 788 GLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSD 867 (1387)
T ss_pred CceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchh
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccc-ccCCCHHHHHHHHHhh
Q 000496 755 LVVGRLK-AQNINQEELDDIIRYG 777 (1462)
Q Consensus 755 ~Vig~~~-~~~~~~~el~~ll~~g 777 (1462)
.|++... ..+++..|++.|+.+.
T Consensus 868 RvVDd~np~an~s~Ke~enLl~~~ 891 (1387)
T KOG1016|consen 868 RVVDDANPDANISQKELENLLMYD 891 (1387)
T ss_pred hhhcccCccccccHHHHHHHhhhh
Confidence 9998764 3578999999998764
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-53 Score=488.26 Aligned_cols=409 Identities=28% Similarity=0.434 Sum_probs=326.8
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHHHHCCCCeEE-E
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVV-M 363 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k~~P~l~vv-v 363 (1462)
.|.|||++||+|. +..|++++||||||||||+|||+++.+.+.++ |.|||||.++...|..++.+|+|...-+ +
T Consensus 198 ~LlPFQreGv~fa---L~RgGR~llADeMGLGKTiQAlaIA~yyraEw--plliVcPAsvrftWa~al~r~lps~~pi~v 272 (689)
T KOG1000|consen 198 RLLPFQREGVIFA---LERGGRILLADEMGLGKTIQALAIARYYRAEW--PLLIVCPASVRFTWAKALNRFLPSIHPIFV 272 (689)
T ss_pred hhCchhhhhHHHH---HhcCCeEEEecccccchHHHHHHHHHHHhhcC--cEEEEecHHHhHHHHHHHHHhcccccceEE
Confidence 6999999999875 47899999999999999999999999988876 9999999999999999999999876542 2
Q ss_pred EEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEecccccccCCc
Q 000496 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNK 443 (1462)
Q Consensus 364 y~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEAHrlKN~ 443 (1462)
..+..+.- +. -....-|.|+||+++......|..-+|.+||+||+|.||+.
T Consensus 273 v~~~~D~~----------~~-------------------~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~s 323 (689)
T KOG1000|consen 273 VDKSSDPL----------PD-------------------VCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDS 323 (689)
T ss_pred EecccCCc----------cc-------------------cccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhcc
Confidence 22222110 00 11234599999999999999999999999999999999999
Q ss_pred chHHHHHHHhc--cccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh---------hHHHHHHHHHhh
Q 000496 444 DSKLFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN---------QEEQISRLHRML 512 (1462)
Q Consensus 444 ~Sk~~~~l~~l--~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~---------~~~~i~~L~~lL 512 (1462)
.++..+++..+ ...|.+||||||--..+.|||.++..+++..|.++.+|...|++.. .-.+..+|+-+|
T Consensus 324 ktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL 403 (689)
T KOG1000|consen 324 KTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALL 403 (689)
T ss_pred chhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHH
Confidence 99998888776 4789999999999999999999999999999999999999997643 224567788777
Q ss_pred c-hhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000496 513 A-PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1462)
Q Consensus 513 ~-p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~ 591 (1462)
. ..|+||+|.+|+++||||...++. .....+-..-+.+.....+ +... +. |+-.+.|- .
T Consensus 404 ~k~lMIRRlK~dvL~qLPpKrr~Vv~-~~~gr~da~~~~lv~~a~~------~t~~---~~-~e~~~~~l----~----- 463 (689)
T KOG1000|consen 404 FKRLMIRRLKADVLKQLPPKRREVVY-VSGGRIDARMDDLVKAAAD------YTKV---NS-MERKHESL----L----- 463 (689)
T ss_pred HHHHHHHHHHHHHHhhCCccceEEEE-EcCCccchHHHHHHHHhhh------cchh---hh-hhhhhHHH----H-----
Confidence 4 569999999999999999555544 4444443333333332221 0000 00 00011100 0
Q ss_pred CcccchHHHHHHhhhchHHHHHHHHHHH----HHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHH
Q 000496 592 DIEDTNESFKQLLESSGKLQLLDKMMVK----LKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (1462)
Q Consensus 592 ~~~~~~~~~~~li~~SgKl~~L~klL~~----l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~I 667 (1462)
+.--...-.|+..+.+.|-. ..+.+.|+|||+++..+||-|+.++..+++.+.||||+|++.+|+.++
T Consensus 464 --------l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~ 535 (689)
T KOG1000|consen 464 --------LFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLC 535 (689)
T ss_pred --------HHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHH
Confidence 00001133466666665555 445688999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCCCHHHHHHHHHH
Q 000496 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747 (1462)
Q Consensus 668 d~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~~~ 747 (1462)
+.|+... ...|-++|..|+|+||+|++|+.|+|.+..|||...+||.+|+||+||+..|.||+|++++|+|+.+|..++
T Consensus 536 qsFQ~se-ev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~ 614 (689)
T KOG1000|consen 536 QSFQTSE-EVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQ 614 (689)
T ss_pred HHhcccc-ceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHH
Confidence 9998744 445689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 000496 748 KKMVLEHLV 756 (1462)
Q Consensus 748 kK~~L~~~V 756 (1462)
+|+.....+
T Consensus 615 ~KL~vl~s~ 623 (689)
T KOG1000|consen 615 QKLDVLGSV 623 (689)
T ss_pred HHHHHHhhc
Confidence 998754443
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=9.5e-52 Score=531.69 Aligned_cols=416 Identities=20% Similarity=0.282 Sum_probs=320.9
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCC-CcEEEEEcchhHHHHHHHHHHHCCCCeEE
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI-SPHLVVAPLSTLRNWEREFATWAPQMNVV 362 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~-~p~LIVvP~sll~qW~~E~~k~~P~l~vv 362 (1462)
..|.|||+..+.++... ...++|||||||||||++|++++..+...+. +|+|||||.+++.||..|+.+|+ ++...
T Consensus 151 ~~l~pHQl~~~~~vl~~--~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~sL~~QW~~El~~kF-~l~~~ 227 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRR--HAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPETLQHQWLVEMLRRF-NLRFS 227 (956)
T ss_pred CCCCHHHHHHHHHHhhc--cCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHHHHHHHHHHHHHHh-CCCeE
Confidence 56999999998776443 4678999999999999999999998876654 59999999999999999998887 56666
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh---cccCCCcceeEecccccc
Q 000496 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCMIVDEGHR 439 (1462)
Q Consensus 363 vy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~---~~L~~i~w~~VIVDEAHr 439 (1462)
+|.+...... . .. .......++++|+||+++..+. ..+....|++|||||||+
T Consensus 228 i~~~~~~~~~-------~-~~----------------~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~ 283 (956)
T PRK04914 228 LFDEERYAEA-------Q-HD----------------ADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHH 283 (956)
T ss_pred EEcCcchhhh-------c-cc----------------ccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhh
Confidence 6655432210 0 00 0011235789999999998754 446677999999999999
Q ss_pred cCC---cchHHHHHHHhc--cccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh--------------
Q 000496 440 LKN---KDSKLFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN-------------- 500 (1462)
Q Consensus 440 lKN---~~Sk~~~~l~~l--~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~-------------- 500 (1462)
+++ ..|+.++.+..+ .++++|+|||||+||+..|+|++|+||+|+.|+++..|.+......
T Consensus 284 lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~ 363 (956)
T PRK04914 284 LVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEK 363 (956)
T ss_pred hccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCc
Confidence 995 356778888877 4679999999999999999999999999999999999986543210
Q ss_pred -hHHHHHHHHHhh------------------------------------chhhhhhhHhhHhhcCCCceeEEEeecCCHH
Q 000496 501 -QEEQISRLHRML------------------------------------APHLLRRVKKDVMKELPPKKELILRVELSSK 543 (1462)
Q Consensus 501 -~~~~i~~L~~lL------------------------------------~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~ 543 (1462)
.......|..+| .+.|+|+++++|. .+|++....+.+++.+.
T Consensus 364 ~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~ 442 (956)
T PRK04914 364 LSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQ 442 (956)
T ss_pred CCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHH
Confidence 011111221111 2568889999976 68999999999999764
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcc-cccCCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHH
Q 000496 544 QKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY-MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKE 622 (1462)
Q Consensus 544 Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~-L~~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~ 622 (1462)
|........ ...++++ .+|. ++.... ........++|+..|.++|+.+
T Consensus 443 ----y~~~~~~~~----------------~~~~~~~-l~pe~~~~~~~--------~~~~~~~~d~Ki~~L~~~L~~~-- 491 (956)
T PRK04914 443 ----YQTAIKVSL----------------EARARDM-LYPEQIYQEFE--------DNATWWNFDPRVEWLIDFLKSH-- 491 (956)
T ss_pred ----HHHHHHHhH----------------HHHHHhh-cCHHHHHHHHh--------hhhhccccCHHHHHHHHHHHhc--
Confidence 322221100 0111221 1221 000000 0011234568999999998875
Q ss_pred cCCeEEEEecchhhHHHHHHHH-HhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEE
Q 000496 623 QGHRVLIYSQFQHMLDLLEDYL-TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (1462)
Q Consensus 623 ~g~KVLIFSq~~~~ldiLed~L-~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi 701 (1462)
.+.||||||++..+++.|.+.| ...|+++..|+|+++..+|+++++.|+.++.+. .|||+|.+||+|+||+.|++||+
T Consensus 492 ~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~-~VLIsTdvgseGlNlq~a~~VIn 570 (956)
T PRK04914 492 RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGA-QVLLCSEIGSEGRNFQFASHLVL 570 (956)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCc-cEEEechhhccCCCcccccEEEE
Confidence 3789999999999999999999 567999999999999999999999998754333 47899999999999999999999
Q ss_pred ecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcc
Q 000496 702 YDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGR 759 (1462)
Q Consensus 702 ~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~~~kK~~L~~~Vig~ 759 (1462)
||+||||..++||+||+||+||++.|.||.+++++|+++.|++...+|+.+...+++.
T Consensus 571 fDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~ 628 (956)
T PRK04914 571 FDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPT 628 (956)
T ss_pred ecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCC
Confidence 9999999999999999999999999999999999999999999999999887776644
No 19
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=5.7e-47 Score=472.22 Aligned_cols=437 Identities=30% Similarity=0.494 Sum_probs=356.6
Q ss_pred HHHHHHHHHHHH-hhccCCcEEEEecCCCchHHHHHHHHHHHHhCCC--------CcEEEEEcchhHHHHHHHHHHHCC-
Q 000496 288 PYQLEGLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLFGERI--------SPHLVVAPLSTLRNWEREFATWAP- 357 (1462)
Q Consensus 288 pyQlegvnwL~~-~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~--------~p~LIVvP~sll~qW~~E~~k~~P- 357 (1462)
.+|..+..|+.. .+..-.+||+||+||+|||+++|+++........ +-.|||||.+++.||..|+.+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 566666655532 3345678999999999999999999887654322 378999999999999999966663
Q ss_pred -CCeEEEEEc-ChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEecc
Q 000496 358 -QMNVVMYVG-TSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1462)
Q Consensus 358 -~l~vvvy~G-~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVD 435 (1462)
.+.+.+|+| .++. ....+++||||||.++.. ..+..+.|-++|+|
T Consensus 215 ~~l~v~v~~gr~kd~-------------------------------~el~~~dVVltTy~il~~--~~l~~i~w~Riild 261 (674)
T KOG1001|consen 215 DKLSIYVYHGRTKDK-------------------------------SELNSYDVVLTTYDILKN--SPLVKIKWLRIVLD 261 (674)
T ss_pred cceEEEEeccccccc-------------------------------chhcCCceEEeeHHHhhc--ccccceeEEEEEec
Confidence 477788888 2111 123578899999999975 66777999999999
Q ss_pred cccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh---h-HHHHHHHHHh
Q 000496 436 EGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN---Q-EEQISRLHRM 511 (1462)
Q Consensus 436 EAHrlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~---~-~~~i~~L~~l 511 (1462)
|||.++|.+++.++++..+.+.+||.|||||+||++.|+|+++.|+.-+.+.....|...+.... . ...+..++.+
T Consensus 262 ea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~ 341 (674)
T KOG1001|consen 262 EAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGI 341 (674)
T ss_pred cccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888887765422 2 4667888899
Q ss_pred hchhhhhhhHhhH-----hhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhc------CCchhhHHHHHHHHHHHh
Q 000496 512 LAPHLLRRVKKDV-----MKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRR------GGAQISLINVVMELRKLC 580 (1462)
Q Consensus 512 L~p~~LRR~K~dV-----~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~------~~~~~~l~nil~~LRk~c 580 (1462)
|.++++||+|..- ...|||+...++.+.++..++.+|+.+........... ......++..+.+||++|
T Consensus 342 L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c 421 (674)
T KOG1001|consen 342 LKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQAC 421 (674)
T ss_pred HHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHc
Confidence 9999999999632 23699999999999999999999999987765544321 223456777788999999
Q ss_pred CCcccccCCCCCcc----cc-----------------------------------hHH---------------------H
Q 000496 581 CHPYMLEGVEPDIE----DT-----------------------------------NES---------------------F 600 (1462)
Q Consensus 581 ~hP~L~~~~e~~~~----~~-----------------------------------~~~---------------------~ 600 (1462)
+||.++-....... .. .+. .
T Consensus 422 ~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 422 DHSLLVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cchHhhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 99987632110000 00 000 0
Q ss_pred HHHhh-------------hchHHHHHHHHHHHHHHcCC-eEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Q 000496 601 KQLLE-------------SSGKLQLLDKMMVKLKEQGH-RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1462)
Q Consensus 601 ~~li~-------------~SgKl~~L~klL~~l~~~g~-KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~ 666 (1462)
..++. .|.|+..+.++|........ ++|||||++.++++++..|...++.+.+++|.++...|.+.
T Consensus 502 ~~l~s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s 581 (674)
T KOG1001|consen 502 KKLLSANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKS 581 (674)
T ss_pred HHHhhcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhh
Confidence 01111 26677777777775444444 99999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCCCHHHHHHHHH
Q 000496 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (1462)
Q Consensus 667 Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~~ 746 (1462)
+..|+ .+....+.|+|.+|||.|+||+.|++||++||+|||....||+.||||+||+++|.|+||++++|+||+|+.++
T Consensus 582 ~~~~~-~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq 660 (674)
T KOG1001|consen 582 FTDFP-CDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQ 660 (674)
T ss_pred hcccc-cCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHH
Confidence 99999 45555669999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 000496 747 KKKMVLEHLVVG 758 (1462)
Q Consensus 747 ~kK~~L~~~Vig 758 (1462)
++|..+.....+
T Consensus 661 ~~K~~~~~~a~~ 672 (674)
T KOG1001|consen 661 EKKREYNASAFG 672 (674)
T ss_pred HHHHHHHhhhcc
Confidence 999998776654
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=3.9e-40 Score=382.38 Aligned_cols=272 Identities=42% Similarity=0.704 Sum_probs=227.6
Q ss_pred HHHHHHHHHHHhh---------ccCCcEEEEecCCCchHHHHHHHHHHHHhCCC----CcEEEEEcchhHHHHHHHHHHH
Q 000496 289 YQLEGLNFLRFSW---------SKQTHVILADEMGLGKTIQSIAFLASLFGERI----SPHLVVAPLSTLRNWEREFATW 355 (1462)
Q Consensus 289 yQlegvnwL~~~~---------~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~----~p~LIVvP~sll~qW~~E~~k~ 355 (1462)
||++||+||+..+ ...++||||||||+|||+++++++.++..... +++|||||.+++.+|..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 88899999999999999999999998876543 2699999999999999999999
Q ss_pred C-C-CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHH-----hhhcccCCCc
Q 000496 356 A-P-QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMIN-----LDSASLKPIK 428 (1462)
Q Consensus 356 ~-P-~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~-----~d~~~L~~i~ 428 (1462)
+ | .+++++|.|....+.. .......++++|+||+.+. .....+..++
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~--------------------------~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~ 134 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRL--------------------------SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIK 134 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHT--------------------------TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSE
T ss_pred cccccccccccccccccccc--------------------------cccccccceeeecccccccccccccccccccccc
Confidence 9 4 6888888887622211 0112357899999999999 6677788899
Q ss_pred ceeEecccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhh---hhhHHHH
Q 000496 429 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD---INQEEQI 505 (1462)
Q Consensus 429 w~~VIVDEAHrlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~---~~~~~~i 505 (1462)
|++|||||+|++||..+..++++..+.+.++|+|||||++|++.|||++++||.|+.+.+...|.+.|.. .......
T Consensus 135 ~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~ 214 (299)
T PF00176_consen 135 WDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYENI 214 (299)
T ss_dssp EEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHHHH
T ss_pred ceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998843 3456788
Q ss_pred HHHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcC----CchhhHHHHHHHHHHHhC
Q 000496 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG----GAQISLINVVMELRKLCC 581 (1462)
Q Consensus 506 ~~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~----~~~~~l~nil~~LRk~c~ 581 (1462)
..|..+++++++||++.++...+|+..+.++.|+||+.|+..|+.+.......+.... +....++..+++||++|+
T Consensus 215 ~~L~~~l~~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~ 294 (299)
T PF00176_consen 215 ERLRELLSEFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCN 294 (299)
T ss_dssp HHHHHHHCCCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhC
Confidence 9999999999999999999889999999999999999999999998887666554332 344678899999999999
Q ss_pred Ccccc
Q 000496 582 HPYML 586 (1462)
Q Consensus 582 hP~L~ 586 (1462)
||+|+
T Consensus 295 hp~l~ 299 (299)
T PF00176_consen 295 HPYLV 299 (299)
T ss_dssp -THHC
T ss_pred CcccC
Confidence 99974
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.7e-36 Score=379.34 Aligned_cols=342 Identities=15% Similarity=0.261 Sum_probs=255.0
Q ss_pred CCCCCHHHHHHHHHHHHhhccC--CcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcch-hHHHHHHHHHHHC--C
Q 000496 283 GGSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWA--P 357 (1462)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~--~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~s-ll~qW~~E~~k~~--P 357 (1462)
..+|||||.++++++. .++ ++|||.++||+|||+++++++..+. +++|||||.+ ++.||.++|.+|+ +
T Consensus 253 ~~~LRpYQ~eAl~~~~---~~gr~r~GIIvLPtGaGKTlvai~aa~~l~----k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVTAACTVK----KSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHH---hcCCCCCcEEEeCCCCChHHHHHHHHHHhC----CCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 4789999999998873 333 5899999999999999999887652 5899999975 5889999999997 3
Q ss_pred CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----------hcccCCC
Q 000496 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----------SASLKPI 427 (1462)
Q Consensus 358 ~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d----------~~~L~~i 427 (1462)
...+..|.|....+. ....+|+|+||+++... ...|...
T Consensus 326 ~~~I~~~tg~~k~~~-------------------------------~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~ 374 (732)
T TIGR00603 326 DSQICRFTSDAKERF-------------------------------HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNR 374 (732)
T ss_pred CceEEEEecCccccc-------------------------------ccCCcEEEEEHHHhhcccccchhhhHHHHHhccc
Confidence 455666666532210 12357999999998643 1345556
Q ss_pred cceeEecccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhh-cCCCCCChHHHHHHHhhhhhHHHHH
Q 000496 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFL-DAGKFGSLEEFQEEFKDINQEEQIS 506 (1462)
Q Consensus 428 ~w~~VIVDEAHrlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL-~p~~f~~~~~F~e~f~~~~~~~~i~ 506 (1462)
.|++||+||||++.+ ....+.+..+.+.+||+|||||++++- .+..+.++ .|..|.
T Consensus 375 ~~gLII~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD~--~~~~L~~LiGP~vye------------------- 431 (732)
T TIGR00603 375 EWGLILLDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVREDD--KITDLNFLIGPKLYE------------------- 431 (732)
T ss_pred cCCEEEEEccccccH--HHHHHHHHhcCcCcEEEEeecCcccCC--chhhhhhhcCCeeee-------------------
Confidence 899999999999964 345556777889999999999998762 23333333 333321
Q ss_pred HHHHhhchhhhhhhHhhHh--hcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcc
Q 000496 507 RLHRMLAPHLLRRVKKDVM--KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY 584 (1462)
Q Consensus 507 ~L~~lL~p~~LRR~K~dV~--~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~ 584 (1462)
....++. ..|.+.....|+|+|++.....|. ... .. .+..
T Consensus 432 ------------~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl---~~~-------~~-----------~k~~----- 473 (732)
T TIGR00603 432 ------------ANWMELQKKGFIANVQCAEVWCPMTPEFYREYL---REN-------SR-----------KRML----- 473 (732)
T ss_pred ------------cCHHHHHhCCccccceEEEEEecCCHHHHHHHH---Hhc-------ch-----------hhhH-----
Confidence 1111221 246777788899999987544442 110 00 0000
Q ss_pred cccCCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHH
Q 000496 585 MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ 664 (1462)
Q Consensus 585 L~~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq 664 (1462)
....+..|+..+..++......|+|+||||+++..++.+...| +. ..|+|.++..+|.
T Consensus 474 -----------------l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~ 531 (732)
T TIGR00603 474 -----------------LYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERM 531 (732)
T ss_pred -----------------HhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHH
Confidence 0012456889999998877678999999999999888887777 33 4589999999999
Q ss_pred HHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCC-ChhhHHHHHhhhhccCCCCc-----EEEEEEecCCCH
Q 000496 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNK-----VMIFRLITRGSI 738 (1462)
Q Consensus 665 ~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dW-NP~~d~QAigRahRiGQ~k~-----V~VyrLvt~~Ti 738 (1462)
+++++|+.++ .+.+|++|++|++||||+.|++||++++++ |+..++||+||+.|.+..+. ..+|.|++++|.
T Consensus 532 ~il~~Fr~~~--~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 532 QILQNFQHNP--KVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred HHHHHHHhCC--CccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 9999997532 334688889999999999999999999986 99999999999999987654 789999999999
Q ss_pred HHHHHHHHH
Q 000496 739 EERMMQMTK 747 (1462)
Q Consensus 739 EE~I~e~~~ 747 (1462)
|+..-.+-+
T Consensus 610 E~~~s~~Rq 618 (732)
T TIGR00603 610 EMYYSTKRQ 618 (732)
T ss_pred HHHHHHHHH
Confidence 998855443
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.1e-32 Score=358.12 Aligned_cols=430 Identities=17% Similarity=0.204 Sum_probs=283.1
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCCC--Ce
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ--MN 360 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~--l~ 360 (1462)
.++|+||.+.+..+. . +++|++++||+|||++++.++..+.....+++|||||. .++.||..+|.+++.. .+
T Consensus 14 ~~~r~yQ~~~~~~~l----~-~n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 88 (773)
T PRK13766 14 IEARLYQQLLAATAL----K-KNTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEK 88 (773)
T ss_pred CCccHHHHHHHHHHh----c-CCeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCce
Confidence 578999999887652 2 38999999999999999988887765445699999998 7889999999988732 47
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcceeEeccccc
Q 000496 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGH 438 (1462)
Q Consensus 361 vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~w~~VIVDEAH 438 (1462)
++++.|......... + ....+|+|+|++.+..+. ..+..-.|++|||||||
T Consensus 89 v~~~~g~~~~~~r~~---~------------------------~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 89 IVVFTGEVSPEKRAE---L------------------------WEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred EEEEeCCCCHHHHHH---H------------------------HhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 888888654322111 1 124579999999987653 33344478999999999
Q ss_pred ccCCcchHHHHHHHhc---cccceEeeccccccCCHHHHHHHHHhhcCCCCCChHH----HHHHHh-------hhhhHHH
Q 000496 439 RLKNKDSKLFSSLKQY---STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEE----FQEEFK-------DINQEEQ 504 (1462)
Q Consensus 439 rlKN~~Sk~~~~l~~l---~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~----F~e~f~-------~~~~~~~ 504 (1462)
++.+..+..+.+-... ...++++|||||.++ ...+..+++-|....+..+.. ....+. ...-...
T Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~ 220 (773)
T PRK13766 142 RAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEE 220 (773)
T ss_pred cccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHH
Confidence 9987655443332222 244689999999775 566767776665433221111 111111 1122345
Q ss_pred HHHHHHhhchhhhhhhHhhHhhc-CCCceeEEEeecCCHHHHHHHHHHHHHHH---HHH---------H-----hcCCch
Q 000496 505 ISRLHRMLAPHLLRRVKKDVMKE-LPPKKELILRVELSSKQKEYYKAILTRNY---QIL---------T-----RRGGAQ 566 (1462)
Q Consensus 505 i~~L~~lL~p~~LRR~K~dV~~~-LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~---~~l---------~-----~~~~~~ 566 (1462)
+..++..|..++.++.+...... +++....+....+...++.++..+..... ..+ . ......
T Consensus 221 ~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 300 (773)
T PRK13766 221 LKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGV 300 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 66778888888877776644222 22222111112222233332222211000 000 0 000011
Q ss_pred hhHHHHHHHHHHHhCCcccccCCCCCcccc------hHHHHHHhhhchHHHHHHHHHHHHH--HcCCeEEEEecchhhHH
Q 000496 567 ISLINVVMELRKLCCHPYMLEGVEPDIEDT------NESFKQLLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLD 638 (1462)
Q Consensus 567 ~~l~nil~~LRk~c~hP~L~~~~e~~~~~~------~~~~~~li~~SgKl~~L~klL~~l~--~~g~KVLIFSq~~~~ld 638 (1462)
..+...+..++....++-..... ...... ......+...++|+..|.++|.... ..+.|+||||++..+++
T Consensus 301 ~~~~~y~~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~ 379 (773)
T PRK13766 301 EALRRYLERLREEARSSGGSKAS-KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAE 379 (773)
T ss_pred HHHHHHHHHHHhhccccCCcHHH-HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHH
Confidence 12222233333222111000000 000000 0011222345789999999999876 56899999999999999
Q ss_pred HHHHHHHhcCCeEEEEecC--------CCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhh
Q 000496 639 LLEDYLTFKKWQYERIDGK--------VGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHA 710 (1462)
Q Consensus 639 iLed~L~~~gi~~~rIdGs--------t~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~ 710 (1462)
.|.++|...|+++.+++|. ++..+|+.++++|+.+. +.+|++|.++++|+|++.+++||+||++|||..
T Consensus 380 ~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~---~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r 456 (773)
T PRK13766 380 KIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGE---FNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIR 456 (773)
T ss_pred HHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCC---CCEEEECChhhcCCCcccCCEEEEeCCCCCHHH
Confidence 9999999999999999997 78899999999998753 448999999999999999999999999999999
Q ss_pred HHHHHhhhhccCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHH
Q 000496 711 DLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLE 753 (1462)
Q Consensus 711 d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~~~kK~~L~ 753 (1462)
++|+.||++|.|+ +.||.|++++|+||.++....+|....
T Consensus 457 ~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 457 SIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred HHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 9998888888765 678999999999999987776655443
No 23
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.97 E-value=9.6e-30 Score=318.60 Aligned_cols=256 Identities=25% Similarity=0.450 Sum_probs=198.0
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHH------------hC-----CCCcEEEEEcchhHHHHHHHHHHHCCCC-eEEE
Q 000496 302 SKQTHVILADEMGLGKTIQSIAFLASLF------------GE-----RISPHLVVAPLSTLRNWEREFATWAPQM-NVVM 363 (1462)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~------------~~-----~~~p~LIVvP~sll~qW~~E~~k~~P~l-~vvv 363 (1462)
..|..+++||+||+|||...++....-. .. ..|.+|||||.+++.||..||.++++.. +|..
T Consensus 372 ~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 372 KHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred cCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEE
Confidence 3456789999999999998776654321 11 1357999999999999999999999877 9999
Q ss_pred EEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh----------------------
Q 000496 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---------------------- 421 (1462)
Q Consensus 364 y~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~---------------------- 421 (1462)
|.|-...-- . .......+|||+|||+.++.+.
T Consensus 452 Y~Girk~~~-------~-------------------~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~ 505 (1394)
T KOG0298|consen 452 YFGIRKTFW-------L-------------------SPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPN 505 (1394)
T ss_pred Eechhhhcc-------c-------------------CchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCC
Confidence 998654311 0 0123468999999999997752
Q ss_pred cccCCCcceeEecccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh-
Q 000496 422 ASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN- 500 (1462)
Q Consensus 422 ~~L~~i~w~~VIVDEAHrlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~- 500 (1462)
+.|-.+.|-.||||||+-+....|...+.+..+.+.++|++||||+|+ +.+||.||.||.-.+|.....|.+.....-
T Consensus 506 SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~ 584 (1394)
T KOG0298|consen 506 SPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQ 584 (1394)
T ss_pred CchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHH
Confidence 234456799999999999999999999999999999999999999999 999999999999999999988877664321
Q ss_pred hHHHHHHHHHhhchhhhhhhHhhHhh--cCCCceeEEEeecCCHHHHHHHHHHHHH----HHHH---HHhc-----CC--
Q 000496 501 QEEQISRLHRMLAPHLLRRVKKDVMK--ELPPKKELILRVELSSKQKEYYKAILTR----NYQI---LTRR-----GG-- 564 (1462)
Q Consensus 501 ~~~~i~~L~~lL~p~~LRR~K~dV~~--~LPpk~e~iv~v~ls~~Qk~~Y~~il~k----~~~~---l~~~-----~~-- 564 (1462)
.......+++++...+-|+.|.+|.. .+||-.+.+....+++.+..+|+..... .... +.+. .+
T Consensus 585 ~ra~~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~ 664 (1394)
T KOG0298|consen 585 LRAKCEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLA 664 (1394)
T ss_pred HHhhhhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccc
Confidence 12344567888888999999999876 4799989999999999988777654322 2111 1110 10
Q ss_pred -----chhhHHHHHHHHHHHhCCcc
Q 000496 565 -----AQISLINVVMELRKLCCHPY 584 (1462)
Q Consensus 565 -----~~~~l~nil~~LRk~c~hP~ 584 (1462)
....+.+.+.+||++|+||-
T Consensus 665 ~l~~~~~a~i~~~l~rLRq~Cchpl 689 (1394)
T KOG0298|consen 665 SLSPQLLAIILKWLLRLRQACCHPL 689 (1394)
T ss_pred cCChhhHHHHHHHHHHHHHhhcccc
Confidence 12457788999999999984
No 24
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=7.6e-28 Score=294.27 Aligned_cols=362 Identities=20% Similarity=0.287 Sum_probs=269.4
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCCCC-e
Q 000496 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM-N 360 (1462)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l-~ 360 (1462)
..+|||||.++++-+...+...+.|++...+|.|||+.++.++..+.. ++|||||. .++.||...+.+++... .
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~----~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~ 109 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR----STLVLVPTKELLDQWAEALKKFLLLNDE 109 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC----CEEEEECcHHHHHHHHHHHHHhcCCccc
Confidence 367999999999766666555889999999999999999999888754 39999997 78899998888887433 2
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCcccccccccccc-ccEEEecHHHHHhhh--cccCCCcceeEecccc
Q 000496 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIK-FDVLLTSYEMINLDS--ASLKPIKWQCMIVDEG 437 (1462)
Q Consensus 361 vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~k-fdVvItSYe~l~~d~--~~L~~i~w~~VIVDEA 437 (1462)
+-.|.|.... .. ..|.|+||+++.+.. ..+..-.|++||+|||
T Consensus 110 ~g~~~~~~~~----------------------------------~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~ 155 (442)
T COG1061 110 IGIYGGGEKE----------------------------------LEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEV 155 (442)
T ss_pred cceecCceec----------------------------------cCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEcc
Confidence 3333332211 11 469999999998863 3333337999999999
Q ss_pred cccCCcchHHHHHHHhccccc-eEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhh
Q 000496 438 HRLKNKDSKLFSSLKQYSTRH-RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (1462)
Q Consensus 438 HrlKN~~Sk~~~~l~~l~~~~-rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~p~~ 516 (1462)
|++.....+. .+..+...+ +|+|||||...+...+..+..++ .|..
T Consensus 156 Hh~~a~~~~~--~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~-------------------------------g~~v 202 (442)
T COG1061 156 HHLPAPSYRR--ILELLSAAYPRLGLTATPEREDGGRIGDLFDLI-------------------------------GPIV 202 (442)
T ss_pred ccCCcHHHHH--HHHhhhcccceeeeccCceeecCCchhHHHHhc-------------------------------CCeE
Confidence 9987655433 333344555 99999999654433333333333 2222
Q ss_pred hhhhHhhHh--hcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000496 517 LRRVKKDVM--KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1462)
Q Consensus 517 LRR~K~dV~--~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~ 594 (1462)
......+.. ..|.|.....+.+.++......|.....+....+..... . .
T Consensus 203 y~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~------~----------------------~ 254 (442)
T COG1061 203 YEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT------L----------------------R 254 (442)
T ss_pred eecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh------h----------------------h
Confidence 322322222 358889999999999999999888776665544432221 0 0
Q ss_pred cchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccC
Q 000496 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (1462)
Q Consensus 595 ~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~ 674 (1462)
..............|+..+..++.... ++.+++||+......+.|...|...|+ ...|+|.++..+|.++++.|..+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~ 332 (442)
T COG1061 255 AENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG 332 (442)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC
Confidence 011112233445678888888888776 899999999999999999999998888 999999999999999999998755
Q ss_pred CCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhcc-CCCCc--EEEEEEecCCCHHHHHHHHHHH
Q 000496 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL-GQTNK--VMIFRLITRGSIEERMMQMTKK 748 (1462)
Q Consensus 675 s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRi-GQ~k~--V~VyrLvt~~TiEE~I~e~~~k 748 (1462)
+.+|++++.+.+|+|++.|+++|+..+.-++..++|++||+.|. ..++. +..|-++...+.+..+......
T Consensus 333 ---~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 333 ---IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred ---CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 56899999999999999999999999999999999999999994 44443 7778888888888877665544
No 25
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=4.5e-27 Score=274.63 Aligned_cols=418 Identities=17% Similarity=0.197 Sum_probs=265.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHC--CCCe
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQMN 360 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~--P~l~ 360 (1462)
.+.|.||+.-+.-. -.+|++++..||||||++|+.++.+.+....+.+|+++|+ .|+.|-.+-+.+.+ |...
T Consensus 14 ie~R~YQ~~i~a~a-----l~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 14 IEPRLYQLNIAAKA-----LFKNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred ccHHHHHHHHHHHH-----hhcCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 46889999876433 2359999999999999999999987766655689999996 78888888888887 5577
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcceeEeccccc
Q 000496 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGH 438 (1462)
Q Consensus 361 vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~w~~VIVDEAH 438 (1462)
++.+.|.-..... .. .+.+-.|++.|++++.+|. ..+..-.+.+||+||||
T Consensus 89 i~~ltGev~p~~R--~~-------------------------~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH 141 (542)
T COG1111 89 IAALTGEVRPEER--EE-------------------------LWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH 141 (542)
T ss_pred eeeecCCCChHHH--HH-------------------------HHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh
Confidence 8888886543221 11 1235569999999998873 34555678999999999
Q ss_pred ccCCcchHHHHH--HHhccc-cceEeeccccccCCHHHHHHHHHhhcCCCCC----ChHHHHHHHh-------hhhhHHH
Q 000496 439 RLKNKDSKLFSS--LKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFG----SLEEFQEEFK-------DINQEEQ 504 (1462)
Q Consensus 439 rlKN~~Sk~~~~--l~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~----~~~~F~e~f~-------~~~~~~~ 504 (1462)
|.-+..+-.+-+ ...... .+.|+||||| -++.+.+...+.-|..+... ...+-..... .+.-...
T Consensus 142 RAvGnyAYv~Va~~y~~~~k~~~ilgLTASP-Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e 220 (542)
T COG1111 142 RAVGNYAYVFVAKEYLRSAKNPLILGLTASP-GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEE 220 (542)
T ss_pred hccCcchHHHHHHHHHHhccCceEEEEecCC-CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHH
Confidence 997766544333 333333 3678999999 45566666666665543321 1111111110 1111223
Q ss_pred HHHHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCH-HHHHHHHHHHHHHHHHHHhcC--------------------
Q 000496 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSS-KQKEYYKAILTRNYQILTRRG-------------------- 563 (1462)
Q Consensus 505 i~~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~-~Qk~~Y~~il~k~~~~l~~~~-------------------- 563 (1462)
+..+.++|+..+-.|++.--... +...-++ .++.+.... .. ........
T Consensus 221 ~~~ir~~l~~~l~~~Lk~L~~~g--------~~~~~~~~~~kdl~~~~-~~-~~~~a~~~~~~~~~~l~~~a~~~kl~~a 290 (542)
T COG1111 221 IKEIRDLLRDALKPRLKPLKELG--------VIESSSPVSKKDLLELR-QI-RLIMAKNEDSDKFRLLSVLAEAIKLAHA 290 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--------ceeccCcccHhHHHHHH-HH-HHHhccCccHHHHHHHHHHHHHHHHHHH
Confidence 33333333332222222111100 1111110 122222211 00 00000000
Q ss_pred ------CchhhHHHHHHHHHHHhCCcccc---cCCCCCcccchHHHHHH------hhhchHHHHHHHHHHHHH--HcCCe
Q 000496 564 ------GAQISLINVVMELRKLCCHPYML---EGVEPDIEDTNESFKQL------LESSGKLQLLDKMMVKLK--EQGHR 626 (1462)
Q Consensus 564 ------~~~~~l~nil~~LRk~c~hP~L~---~~~e~~~~~~~~~~~~l------i~~SgKl~~L~klL~~l~--~~g~K 626 (1462)
.+...+.+-+.+|..-|.. -.. ...-.+ ......+..+ --..+||..+.+++.+.. ..+.|
T Consensus 291 ~elletqGi~~~~~Yl~~l~e~~~~-~~sk~a~~l~~d-~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~R 368 (542)
T COG1111 291 LELLETQGIRPFYQYLEKLEEEATK-GGSKAAKSLLAD-PYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSR 368 (542)
T ss_pred HHHHHhhChHHHHHHHHHHHHHhcc-cchHHHHHHhcC-hhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCce
Confidence 0011111112222211111 000 000000 0000011111 124689999999999876 56789
Q ss_pred EEEEecchhhHHHHHHHHHhcCCeEE-EEec--------CCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCC
Q 000496 627 VLIYSQFQHMLDLLEDYLTFKKWQYE-RIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATAD 697 (1462)
Q Consensus 627 VLIFSq~~~~ldiLed~L~~~gi~~~-rIdG--------st~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad 697 (1462)
||||++|..+++.|.++|...|.... ++-| +|++.+..++|+.|.++.-+ +|++|..|.+|||++.+|
T Consensus 369 vIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n---VLVaTSVgEEGLDIp~vD 445 (542)
T COG1111 369 VIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN---VLVATSVGEEGLDIPEVD 445 (542)
T ss_pred EEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce---EEEEcccccccCCCCccc
Confidence 99999999999999999999988876 6666 37889999999999875544 899999999999999999
Q ss_pred EEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCCCHHHHHHHHHHHHHHH
Q 000496 698 TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVL 752 (1462)
Q Consensus 698 ~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~~~kK~~L 752 (1462)
.||+|||-=+|-..+||+||.+| ++.-.||-|+++||-||.-+..+.+|..-
T Consensus 446 lVifYEpvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~ 497 (542)
T COG1111 446 LVIFYEPVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQK 497 (542)
T ss_pred EEEEecCCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHH
Confidence 99999999999999999999998 47778899999999999999988888653
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=5.2e-27 Score=291.98 Aligned_cols=336 Identities=14% Similarity=0.164 Sum_probs=229.7
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHC--CCC
Q 000496 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQM 359 (1462)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~--P~l 359 (1462)
.+.|||||.+++.-+ ..+.++||...||+|||++++.++..+...+..++|||||. .++.||.++|.+|. |..
T Consensus 112 ~~~~r~~Q~~av~~~----l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~ 187 (501)
T PHA02558 112 KIEPHWYQYDAVYEG----LKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE 187 (501)
T ss_pred cCCCCHHHHHHHHHH----HhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhcccccc
Confidence 368999999998654 24677899999999999988776665555554599999997 88899999999976 322
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEecccccc
Q 000496 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHR 439 (1462)
Q Consensus 360 ~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEAHr 439 (1462)
.+....++... ....+|+|+|++.+......+. -.|++|||||||+
T Consensus 188 ~~~~i~~g~~~---------------------------------~~~~~I~VaT~qsl~~~~~~~~-~~~~~iIvDEaH~ 233 (501)
T PHA02558 188 AMHKIYSGTAK---------------------------------DTDAPIVVSTWQSAVKQPKEWF-DQFGMVIVDECHL 233 (501)
T ss_pred ceeEEecCccc---------------------------------CCCCCEEEeeHHHHhhchhhhc-cccCEEEEEchhc
Confidence 23222222110 1245799999999875432211 2678999999999
Q ss_pred cCCcchHHHHHHHhc-cccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhhhh
Q 000496 440 LKNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLR 518 (1462)
Q Consensus 440 lKN~~Sk~~~~l~~l-~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~p~~LR 518 (1462)
+... .+...+..+ .+.++++|||||-..... .+.+..++.|-... .
T Consensus 234 ~~~~--~~~~il~~~~~~~~~lGLTATp~~~~~~-~~~~~~~fG~i~~~-----------v------------------- 280 (501)
T PHA02558 234 FTGK--SLTSIITKLDNCKFKFGLTGSLRDGKAN-ILQYVGLFGDIFKP-----------V------------------- 280 (501)
T ss_pred ccch--hHHHHHHhhhccceEEEEeccCCCcccc-HHHHHHhhCCceEE-----------e-------------------
Confidence 9753 344555666 477899999999533221 11112222221100 0
Q ss_pred hhHhhHh--hcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcccc
Q 000496 519 RVKKDVM--KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDT 596 (1462)
Q Consensus 519 R~K~dV~--~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~~~ 596 (1462)
...++. ..+.+.....+.+..++.....+ .... .
T Consensus 281 -~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~-------------~~~~------------------------------~ 316 (501)
T PHA02558 281 -TTSQLMEEGQVTDLKINSIFLRYPDEDRVKL-------------KGED------------------------------Y 316 (501)
T ss_pred -cHHHHHhCCCcCCceEEEEeccCCHHHhhhh-------------cccc------------------------------h
Confidence 000111 12223333344444443211100 0000 0
Q ss_pred hHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCC
Q 000496 597 NESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSS 676 (1462)
Q Consensus 597 ~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~ 676 (1462)
.+.+..+.....+..++.+++..+...|+++|||+..+..++.|.+.|...|+++..++|+++.++|..+++.|+.+ .
T Consensus 317 ~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~--~ 394 (501)
T PHA02558 317 QEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGG--K 394 (501)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCC--C
Confidence 01112233344566677777777778899999999999999999999999999999999999999999999999752 2
Q ss_pred CceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCC-cEEEEEEecC
Q 000496 677 RFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN-KVMIFRLITR 735 (1462)
Q Consensus 677 ~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k-~V~VyrLvt~ 735 (1462)
..++|.|++..|+|+|++.+|+||+++|.-+...++|++||++|.|..| .+.||.|+-.
T Consensus 395 ~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~ 454 (501)
T PHA02558 395 GIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDD 454 (501)
T ss_pred CeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecc
Confidence 2334444599999999999999999999999999999999999998776 7899999854
No 27
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=99.95 E-value=3.2e-28 Score=242.86 Aligned_cols=133 Identities=56% Similarity=0.955 Sum_probs=123.0
Q ss_pred CCCCCCccccccCCCCCCCCCccccccchhccCCChHHHHHHHHHHHhcCCCCcchhhhchhhcCCCHHHHHHHHHHHHH
Q 000496 936 QPGRKPNKKRSRVDSMEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLT 1015 (1462)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~p~~~~E~~~l~v~GF~~w~Rr~Fv~a~~KyG~~~~~~~~ia~eL~~Ks~eEvk~Ya~lF~~ 1015 (1462)
...+++++++.| ++..++||++++++++.|+|||..||+.|++++||||+++++|.|+.++|.+||.+||++|+.+||.
T Consensus 9 ~~~r~~~rkk~r-~~~~~pPLm~~~g~~l~VlGFn~rQR~~Fln~vMR~G~~~f~~~w~~~~Lr~Ks~~ei~aY~~LFm~ 87 (145)
T PF06461_consen 9 ETGRRPSRKKRR-DNKDPPPLMAGVGGQLEVLGFNPRQRKAFLNAVMRYGMGAFDWKWFVPRLRGKSEKEIRAYGSLFMR 87 (145)
T ss_pred cccccccccccc-cCCCCCCccccCCCceEEeccCHHHHHHHHHHHHHHCcCcccchHHhhhhccccHHHHHHHHHHHHH
Confidence 345566666666 5556799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCC-CCCccCCCCcCccchHHHHHHHHHHHHHHHHHHhccCCCCCCCccc
Q 000496 1016 HITEDITD-SPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTD 1069 (1462)
Q Consensus 1016 ~~~E~i~d-~e~~~d~i~k~~~k~~~vl~Ri~~~~ll~~Kv~~~~~~p~~~~~~~ 1069 (1462)
|+||+++| +++|+|||||+++++++||+||++|+||++||++|+.+|..+.||.
T Consensus 88 HL~E~~~d~s~tfsDGVPkEgl~~q~VL~RIgvm~LIr~KV~e~e~~ng~~s~p~ 142 (145)
T PF06461_consen 88 HLCEPGTDNSDTFSDGVPKEGLRRQDVLVRIGVMSLIRKKVQEFEHINGTWSFPE 142 (145)
T ss_pred HhcCCCcCCCCccCCCCccCCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCccCch
Confidence 99999988 9999999999999999999999999999999999999998888764
No 28
>PTZ00110 helicase; Provisional
Probab=99.91 E-value=1.9e-22 Score=253.18 Aligned_cols=319 Identities=17% Similarity=0.238 Sum_probs=215.0
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHH-HHHHHHHhC-----CCC-cEEEEEcc-hhHHHHHHHHHHH
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGE-----RIS-PHLVVAPL-STLRNWEREFATW 355 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~L~~~-----~~~-p~LIVvP~-sll~qW~~E~~k~ 355 (1462)
.++.|+|.+++..+ ..++++|+..+||+|||++.+ .++..+... ..+ .+|||||+ .|..|+..++.++
T Consensus 151 ~~pt~iQ~~aip~~----l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~ 226 (545)
T PTZ00110 151 TEPTPIQVQGWPIA----LSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKF 226 (545)
T ss_pred CCCCHHHHHHHHHH----hcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHH
Confidence 35889999998665 578899999999999999864 344444332 123 47999997 7778999999998
Q ss_pred CCC--CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc--ccCCCccee
Q 000496 356 APQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQC 431 (1462)
Q Consensus 356 ~P~--l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~--~L~~i~w~~ 431 (1462)
... +++.+.+|.......+... ....+|+|+|++.+..... .+.--...+
T Consensus 227 ~~~~~i~~~~~~gg~~~~~q~~~l--------------------------~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~ 280 (545)
T PTZ00110 227 GASSKIRNTVAYGGVPKRGQIYAL--------------------------RRGVEILIACPGRLIDFLESNVTNLRRVTY 280 (545)
T ss_pred hcccCccEEEEeCCCCHHHHHHHH--------------------------HcCCCEEEECHHHHHHHHHcCCCChhhCcE
Confidence 743 5566666654443322221 1246899999988754321 122234678
Q ss_pred EecccccccCCcc--hHHHHHHHhccc-cceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000496 432 MIVDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1462)
Q Consensus 432 VIVDEAHrlKN~~--Sk~~~~l~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L 508 (1462)
|||||||++.... ..+.+.+..+.. ...+++|||.- .++-.+...
T Consensus 281 lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p----~~v~~l~~~---------------------------- 328 (545)
T PTZ00110 281 LVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWP----KEVQSLARD---------------------------- 328 (545)
T ss_pred EEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCC----HHHHHHHHH----------------------------
Confidence 9999999987543 233444444533 34688999941 111111100
Q ss_pred HHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000496 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1462)
Q Consensus 509 ~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~ 588 (1462)
++. ..| ..+.+.... ... .. .+++ -+
T Consensus 329 --l~~-------------~~~----v~i~vg~~~--l~~---------------~~----------~i~q----~~---- 354 (545)
T PTZ00110 329 --LCK-------------EEP----VHVNVGSLD--LTA---------------CH----------NIKQ----EV---- 354 (545)
T ss_pred --Hhc-------------cCC----EEEEECCCc--ccc---------------CC----------CeeE----EE----
Confidence 000 000 001110000 000 00 0000 00
Q ss_pred CCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHH
Q 000496 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1462)
Q Consensus 589 ~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id 668 (1462)
..+....|...|..+|..+...+.++||||+....++.|...|...|++...++|.++..+|..+++
T Consensus 355 -------------~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~ 421 (545)
T PTZ00110 355 -------------FVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLN 421 (545)
T ss_pred -------------EEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHH
Confidence 0011233556666777776667889999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCC
Q 000496 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1462)
Q Consensus 669 ~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1462)
.|..+.. .+|++|.++++|||++.+++||+||+++++..++|++||++|.|.+-.+ |.|++.+
T Consensus 422 ~F~~G~~---~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~a--i~~~~~~ 484 (545)
T PTZ00110 422 EFKTGKS---PIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGAS--YTFLTPD 484 (545)
T ss_pred HHhcCCC---cEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEECcc
Confidence 9986443 4899999999999999999999999999999999999999999986544 5556654
No 29
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.90 E-value=5.8e-22 Score=244.64 Aligned_cols=310 Identities=16% Similarity=0.228 Sum_probs=205.7
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHH-HHHHHhCC-----C--CcEEEEEcc-hhHHHHHHHHHH
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGER-----I--SPHLVVAPL-STLRNWEREFAT 354 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~-l~~L~~~~-----~--~p~LIVvP~-sll~qW~~E~~k 354 (1462)
..+.|+|.+++.-+ ..+.++|+...+|+|||+..+.. +..+.... . ..+|||||. .+..||.+++..
T Consensus 22 ~~pt~iQ~~ai~~i----l~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~ 97 (456)
T PRK10590 22 REPTPIQQQAIPAV----LEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRD 97 (456)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHH
Confidence 36889999998766 56889999999999999986544 44433221 1 158999997 777899999988
Q ss_pred HCC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcce
Q 000496 355 WAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQ 430 (1462)
Q Consensus 355 ~~P--~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~w~ 430 (1462)
+.. .+.++.+.|.......+... ...++|+|+|++.+.... ..+.--...
T Consensus 98 ~~~~~~~~~~~~~gg~~~~~~~~~l--------------------------~~~~~IiV~TP~rL~~~~~~~~~~l~~v~ 151 (456)
T PRK10590 98 YSKYLNIRSLVVFGGVSINPQMMKL--------------------------RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151 (456)
T ss_pred HhccCCCEEEEEECCcCHHHHHHHH--------------------------cCCCcEEEEChHHHHHHHHcCCcccccce
Confidence 764 35666666665433221111 135789999999885432 222233567
Q ss_pred eEecccccccCCcc--hHHHHHHHhcccc-ceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHH
Q 000496 431 CMIVDEGHRLKNKD--SKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1462)
Q Consensus 431 ~VIVDEAHrlKN~~--Sk~~~~l~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~ 507 (1462)
+|||||||++-... ..+...+..+... ..+++|||+-. .+.++. ..+..
T Consensus 152 ~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~-~~~~l~---~~~~~------------------------ 203 (456)
T PRK10590 152 ILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSD-DIKALA---EKLLH------------------------ 203 (456)
T ss_pred EEEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcH-HHHHHH---HHHcC------------------------
Confidence 99999999986533 2333444445433 46899999621 111111 00000
Q ss_pred HHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccccc
Q 000496 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (1462)
Q Consensus 508 L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~ 587 (1462)
.|..+.-..... ..+........+
T Consensus 204 -----~~~~i~~~~~~~--~~~~i~~~~~~~------------------------------------------------- 227 (456)
T PRK10590 204 -----NPLEIEVARRNT--ASEQVTQHVHFV------------------------------------------------- 227 (456)
T ss_pred -----CCeEEEEecccc--cccceeEEEEEc-------------------------------------------------
Confidence 000000000000 000000000000
Q ss_pred CCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHH
Q 000496 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (1462)
Q Consensus 588 ~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~I 667 (1462)
....|..+|..++.. ....++|||++.....+.|...|...|+....++|.++..+|..++
T Consensus 228 -----------------~~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l 288 (456)
T PRK10590 228 -----------------DKKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRAL 288 (456)
T ss_pred -----------------CHHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH
Confidence 011122333333332 2346899999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEE
Q 000496 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1462)
Q Consensus 668 d~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~V 729 (1462)
+.|.++ .+.+|++|.++++|||++.+++||+||++.++..++|++||++|.|.+..+.+
T Consensus 289 ~~F~~g---~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~ 347 (456)
T PRK10590 289 ADFKSG---DIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALS 347 (456)
T ss_pred HHHHcC---CCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEE
Confidence 999764 34589999999999999999999999999999999999999999998765444
No 30
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=4.9e-22 Score=246.12 Aligned_cols=309 Identities=18% Similarity=0.168 Sum_probs=208.3
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCCCCeEE
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vv 362 (1462)
..++|+|.++++-+ ..++++++..+||+|||+..+.-+ +.. .+..|||+|+ +++.++.+.+... ++.+.
T Consensus 10 ~~~r~~Q~~ai~~~----l~g~dvlv~apTGsGKTl~y~lp~--l~~--~~~~lVi~P~~~L~~dq~~~l~~~--gi~~~ 79 (470)
T TIGR00614 10 SSFRPVQLEVINAV----LLGRDCFVVMPTGGGKSLCYQLPA--LCS--DGITLVISPLISLMEDQVLQLKAS--GIPAT 79 (470)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCCcHhHHHHHHH--HHc--CCcEEEEecHHHHHHHHHHHHHHc--CCcEE
Confidence 46999999999876 467799999999999998653322 222 3479999997 7888898988865 45556
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh---ccc-CCCcceeEeccccc
Q 000496 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASL-KPIKWQCMIVDEGH 438 (1462)
Q Consensus 363 vy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~---~~L-~~i~w~~VIVDEAH 438 (1462)
.+.+.........-..- .....++++++|++.+.... ..+ ......+|||||||
T Consensus 80 ~l~~~~~~~~~~~i~~~----------------------~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH 137 (470)
T TIGR00614 80 FLNSSQSKEQQKNVLTD----------------------LKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAH 137 (470)
T ss_pred EEeCCCCHHHHHHHHHH----------------------HhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCc
Confidence 66655433221111000 01246789999999886533 222 33467899999999
Q ss_pred ccCCcch-------HHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHh
Q 000496 439 RLKNKDS-------KLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1462)
Q Consensus 439 rlKN~~S-------k~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~l 511 (1462)
++..... .+......+.....++|||||-.....++...+++-.|..+... |
T Consensus 138 ~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s------~--------------- 196 (470)
T TIGR00614 138 CISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS------F--------------- 196 (470)
T ss_pred ccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC------C---------------
Confidence 9865332 12222233455668999999854444444443332222111000 0
Q ss_pred hchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000496 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1462)
Q Consensus 512 L~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~ 591 (1462)
.-|.. .+.+.-..
T Consensus 197 ---------------~r~nl-~~~v~~~~--------------------------------------------------- 209 (470)
T TIGR00614 197 ---------------DRPNL-YYEVRRKT--------------------------------------------------- 209 (470)
T ss_pred ---------------CCCCc-EEEEEeCC---------------------------------------------------
Confidence 00000 00000000
Q ss_pred CcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHh
Q 000496 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1462)
Q Consensus 592 ~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn 671 (1462)
...+..+.+++.+ ...+.++||||......+.|...|...|+.+..++|+++..+|..+++.|.
T Consensus 210 ---------------~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~ 273 (470)
T TIGR00614 210 ---------------PKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQ 273 (470)
T ss_pred ---------------ccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHH
Confidence 0011112222221 134678899999999999999999999999999999999999999999998
Q ss_pred ccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEE
Q 000496 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (1462)
Q Consensus 672 ~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~Vyr 731 (1462)
.+. +.+|++|.+.|.|||++.+++||+|+++.++..+.|++||++|.|+...+.+|+
T Consensus 274 ~g~---~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~ 330 (470)
T TIGR00614 274 RDE---IQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFY 330 (470)
T ss_pred cCC---CcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEe
Confidence 543 448999999999999999999999999999999999999999999887666543
No 31
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.90 E-value=1e-21 Score=243.89 Aligned_cols=314 Identities=18% Similarity=0.286 Sum_probs=210.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHH-HHHHHHHhCC--------CCcEEEEEcc-hhHHHHHHHHHH
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGER--------ISPHLVVAPL-STLRNWEREFAT 354 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~L~~~~--------~~p~LIVvP~-sll~qW~~E~~k 354 (1462)
.+.++|.+++..+ ..|.++|++..+|+|||+..+ .++..+.... ....|||+|+ .+..|+.+.+..
T Consensus 109 ~~~~iQ~~ai~~~----~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~ 184 (475)
T PRK01297 109 YCTPIQAQVLGYT----LAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 184 (475)
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 5889999998866 678999999999999998754 3444444321 2368999997 777899998887
Q ss_pred HCC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc--ccCCCcce
Q 000496 355 WAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQ 430 (1462)
Q Consensus 355 ~~P--~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~--~L~~i~w~ 430 (1462)
+.. ++++..++|+.+....++.. ....++|+|+|++++..... .+.--...
T Consensus 185 l~~~~~~~v~~~~gg~~~~~~~~~~-------------------------~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 185 LTKYTGLNVMTFVGGMDFDKQLKQL-------------------------EARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred hhccCCCEEEEEEccCChHHHHHHH-------------------------hCCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 754 46777888865443322221 11357899999999864322 11112457
Q ss_pred eEecccccccCCcc--hHHHHHHHhcc---ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHH
Q 000496 431 CMIVDEGHRLKNKD--SKLFSSLKQYS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (1462)
Q Consensus 431 ~VIVDEAHrlKN~~--Sk~~~~l~~l~---~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i 505 (1462)
+|||||||++.+.. ..+...+..+. ....+++|||.- +++.++. .. |.
T Consensus 240 ~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~-~~~~~~~---~~---------------~~-------- 292 (475)
T PRK01297 240 VMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFT-DDVMNLA---KQ---------------WT-------- 292 (475)
T ss_pred eEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecC-HHHHHHH---HH---------------hc--------
Confidence 89999999997543 22334444443 235789999942 1111111 00 00
Q ss_pred HHHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccc
Q 000496 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1462)
Q Consensus 506 ~~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L 585 (1462)
..|. .+.+.... .... . +. .|-+.
T Consensus 293 ------~~~~-------------------~v~~~~~~-------------------~~~~--~-------~~---~~~~~ 316 (475)
T PRK01297 293 ------TDPA-------------------IVEIEPEN-------------------VASD--T-------VE---QHVYA 316 (475)
T ss_pred ------cCCE-------------------EEEeccCc-------------------CCCC--c-------cc---EEEEE
Confidence 0000 00000000 0000 0 00 00000
Q ss_pred ccCCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Q 000496 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1462)
Q Consensus 586 ~~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~ 665 (1462)
+..+.|..+|..++.. ....++|||++....++.|...|...|+.+..++|.++..+|..
T Consensus 317 ------------------~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~ 376 (475)
T PRK01297 317 ------------------VAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIK 376 (475)
T ss_pred ------------------ecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHH
Confidence 0112344455555543 23469999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecC
Q 000496 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1462)
Q Consensus 666 ~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~ 735 (1462)
+++.|.++. ..+|++|.++++|||++.+++||+|+.++|+..++|+.||++|.|+.-.+ +.|++.
T Consensus 377 ~~~~Fr~G~---~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~--i~~~~~ 441 (475)
T PRK01297 377 TLEGFREGK---IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVS--ISFAGE 441 (475)
T ss_pred HHHHHhCCC---CcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceE--EEEecH
Confidence 999997643 44899999999999999999999999999999999999999999986543 334444
No 32
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.90 E-value=9.2e-22 Score=246.08 Aligned_cols=314 Identities=16% Similarity=0.212 Sum_probs=207.6
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHH-HHHHHHhC--------CCCcEEEEEcc-hhHHHHHHHHH
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGE--------RISPHLVVAPL-STLRNWEREFA 353 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa-~l~~L~~~--------~~~p~LIVvP~-sll~qW~~E~~ 353 (1462)
..+.|+|.+++..+ ..++++|+..+||+|||+..+. ++..+... ....+|||+|+ .+..|+.+++.
T Consensus 142 ~~ptpiQ~~aip~i----l~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAA----LSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHH----hcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 36889999998776 4789999999999999988654 34443321 11268999997 67788888888
Q ss_pred HHCCC--CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcc
Q 000496 354 TWAPQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKW 429 (1462)
Q Consensus 354 k~~P~--l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~w 429 (1462)
.+... ++++.+.|.......+... ...++|+|+|++.+.... ..+.--..
T Consensus 218 ~l~~~~~~~~~~~~gG~~~~~q~~~l--------------------------~~~~~IiV~TPgrL~~~l~~~~~~l~~v 271 (518)
T PLN00206 218 VLGKGLPFKTALVVGGDAMPQQLYRI--------------------------QQGVELIVGTPGRLIDLLSKHDIELDNV 271 (518)
T ss_pred HHhCCCCceEEEEECCcchHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCccchhe
Confidence 87643 4555555544322221111 124789999998874421 12222345
Q ss_pred eeEecccccccCCc--chHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHH
Q 000496 430 QCMIVDEGHRLKNK--DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1462)
Q Consensus 430 ~~VIVDEAHrlKN~--~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~ 507 (1462)
.+|||||||++... ...+...+..+.....+++|||.-. .+.. +...+
T Consensus 272 ~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~-~v~~---l~~~~-------------------------- 321 (518)
T PLN00206 272 SVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVSP-EVEK---FASSL-------------------------- 321 (518)
T ss_pred eEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCH-HHHH---HHHHh--------------------------
Confidence 78999999998643 3344555566666788999999521 1111 11100
Q ss_pred HHHhhchhhhhhhHhhHhhcCCCc--eeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccc
Q 000496 508 LHRMLAPHLLRRVKKDVMKELPPK--KELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1462)
Q Consensus 508 L~~lL~p~~LRR~K~dV~~~LPpk--~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L 585 (1462)
+...+.-.... ...+.. ....+.+.
T Consensus 322 ----~~~~~~i~~~~---~~~~~~~v~q~~~~~~---------------------------------------------- 348 (518)
T PLN00206 322 ----AKDIILISIGN---PNRPNKAVKQLAIWVE---------------------------------------------- 348 (518)
T ss_pred ----CCCCEEEEeCC---CCCCCcceeEEEEecc----------------------------------------------
Confidence 00000000000 000000 01111111
Q ss_pred ccCCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHh-cCCeEEEEecCCCHHHHH
Q 000496 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQ 664 (1462)
Q Consensus 586 ~~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~-~gi~~~rIdGst~~~eRq 664 (1462)
...|...|.++|........++|||++.....+.|...|.. .|+++..++|+++..+|.
T Consensus 349 --------------------~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~ 408 (518)
T PLN00206 349 --------------------TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERR 408 (518)
T ss_pred --------------------chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHH
Confidence 11122334444444333346899999999999999999974 699999999999999999
Q ss_pred HHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecC
Q 000496 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1462)
Q Consensus 665 ~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~ 735 (1462)
.+++.|.++.. -+|++|.++++|||++.+++||+||++.++..++|++||++|.|..-. ++.|++.
T Consensus 409 ~il~~Fr~G~~---~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~--ai~f~~~ 474 (518)
T PLN00206 409 EVMKSFLVGEV---PVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGT--AIVFVNE 474 (518)
T ss_pred HHHHHHHCCCC---CEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeE--EEEEEch
Confidence 99999986443 489999999999999999999999999999999999999999997644 4445554
No 33
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.90 E-value=5.4e-21 Score=235.91 Aligned_cols=404 Identities=18% Similarity=0.246 Sum_probs=239.3
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCC-CcEEEEEcc-hhHHHHHHHHHHHCCCCeE
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI-SPHLVVAPL-STLRNWEREFATWAPQMNV 361 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~-~p~LIVvP~-sll~qW~~E~~k~~P~l~v 361 (1462)
..||+||.+-+.-. . +.|+|+|..||+|||..|+.++...++..+ ++++++||+ .++.|-...|...+-...+
T Consensus 61 ~~lR~YQ~eivq~A----L-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~ 135 (746)
T KOG0354|consen 61 LELRNYQEELVQPA----L-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSV 135 (746)
T ss_pred ccccHHHHHHhHHh----h-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCcccc
Confidence 57999999987544 3 899999999999999999888887776654 599999998 5667777778777644556
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCC---CcceeEeccccc
Q 000496 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKP---IKWQCMIVDEGH 438 (1462)
Q Consensus 362 vvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~---i~w~~VIVDEAH 438 (1462)
....|+...+.... .-....+|++.|.+++..+...... -.|.++||||||
T Consensus 136 T~~l~~~~~~~~r~--------------------------~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H 189 (746)
T KOG0354|consen 136 TGQLGDTVPRSNRG--------------------------EIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH 189 (746)
T ss_pred eeeccCccCCCchh--------------------------hhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc
Confidence 66665533322111 0123568999999999887443322 348999999999
Q ss_pred ccCCcc--hHHHHHHHhcc--ccceEeeccccccCCHHHHHHHHHhhcCCCCC--ChHHHHHHHhhh------------h
Q 000496 439 RLKNKD--SKLFSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFG--SLEEFQEEFKDI------------N 500 (1462)
Q Consensus 439 rlKN~~--Sk~~~~l~~l~--~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~--~~~~F~e~f~~~------------~ 500 (1462)
|..... +...+.+...+ ....|+|||||= ++.....+.+.=|... +. ....-...|... .
T Consensus 190 ra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~lr~~~~i~v~~~~~ 267 (746)
T KOG0354|consen 190 RTSKNHPYNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCAS-LDVRTESSIKSNYEELREHVQIPVDLSLC 267 (746)
T ss_pred cccccccHHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhhee-cccchhhhhhhhHHHHhccCcccCcHHHh
Confidence 985433 34444444443 235789999997 6666666555544433 11 111112222111 1
Q ss_pred hHHHHHHHHHhhchhhhhhhHhhHhhcCCCceeEE-------Eeec------CCHHHHH-HHHHHHHH-HHHHHHhcCCc
Q 000496 501 QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELI-------LRVE------LSSKQKE-YYKAILTR-NYQILTRRGGA 565 (1462)
Q Consensus 501 ~~~~i~~L~~lL~p~~LRR~K~dV~~~LPpk~e~i-------v~v~------ls~~Qk~-~Y~~il~k-~~~~l~~~~~~ 565 (1462)
.......|..+++|++.+-.... |.+..... +..+ .-..|+- +|...+.. +...+...+-
T Consensus 268 ~~~~~~~f~~~i~p~l~~l~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gi- 342 (746)
T KOG0354|consen 268 ERDIEDPFGMIIEPLLQQLQEEG----LIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGI- 342 (746)
T ss_pred hhhhhhhHHHHHHHHHHHHHhcC----ccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcch-
Confidence 12334556667777655433222 21111000 0000 0001110 11111111 1111111000
Q ss_pred hhhHHHHHHHHHHHhCCc----ccccCCCCCc-ccch---HHHHHHh----hhchHHHHHHHHHHHHHHc--CCeEEEEe
Q 000496 566 QISLINVVMELRKLCCHP----YMLEGVEPDI-EDTN---ESFKQLL----ESSGKLQLLDKMMVKLKEQ--GHRVLIYS 631 (1462)
Q Consensus 566 ~~~l~nil~~LRk~c~hP----~L~~~~e~~~-~~~~---~~~~~li----~~SgKl~~L~klL~~l~~~--g~KVLIFS 631 (1462)
.+.+.+..+.....-- |+....+... .... ..+..+. ...+|+..|.++|....+. ..|+|||+
T Consensus 343 --r~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFv 420 (746)
T KOG0354|consen 343 --RFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFV 420 (746)
T ss_pred --hhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEE
Confidence 0111111111000000 0000000000 0000 0011111 2478999999999877654 57999999
Q ss_pred cchhhHHHHHHHHH-h--cCCeEEEEec--------CCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEE
Q 000496 632 QFQHMLDLLEDYLT-F--KKWQYERIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1462)
Q Consensus 632 q~~~~ldiLed~L~-~--~gi~~~rIdG--------st~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VI 700 (1462)
.+...++.|..+|. . -|++...+-| +++..+.+++|+.|+++... +|++|..|.+|||+..||.||
T Consensus 421 e~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~lVI 497 (746)
T KOG0354|consen 421 ETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECNLVI 497 (746)
T ss_pred ehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCcccccEEE
Confidence 99999999999997 2 3556665655 46788899999999885554 899999999999999999999
Q ss_pred EecCCCChhhHHHHHhhhhccCCCCcEEEEEEec
Q 000496 701 IYDSDWNPHADLQAMARAHRLGQTNKVMIFRLIT 734 (1462)
Q Consensus 701 i~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt 734 (1462)
.||..-||...+||+|| +|- +.-.++.|.+
T Consensus 498 cYd~~snpIrmIQrrGR-gRa---~ns~~vll~t 527 (746)
T KOG0354|consen 498 CYDYSSNPIRMVQRRGR-GRA---RNSKCVLLTT 527 (746)
T ss_pred EecCCccHHHHHHHhcc-ccc---cCCeEEEEEc
Confidence 99999999999999999 774 4444444555
No 34
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.90 E-value=6.5e-22 Score=244.76 Aligned_cols=314 Identities=17% Similarity=0.275 Sum_probs=215.4
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHH-HHHHHHHhCCCC-cEEEEEcc-hhHHHHHHHHHHHC---C
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERIS-PHLVVAPL-STLRNWEREFATWA---P 357 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~L~~~~~~-p~LIVvP~-sll~qW~~E~~k~~---P 357 (1462)
.++.|+|.+++..+ ..+.+.|+..++|+|||...+ .++..+...... .+||+||. .+..||.+++..+. +
T Consensus 25 ~~~t~iQ~~ai~~~----l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 100 (460)
T PRK11776 25 TEMTPIQAQSLPAI----LAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIP 100 (460)
T ss_pred CCCCHHHHHHHHHH----hcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 35889999999877 578899999999999998754 444444333223 68999997 77889999988764 5
Q ss_pred CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcceeEecc
Q 000496 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVD 435 (1462)
Q Consensus 358 ~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~w~~VIVD 435 (1462)
++++..++|.......+... ....+|+|+|++.+.... ..+.--.+.+||+|
T Consensus 101 ~~~v~~~~Gg~~~~~~~~~l--------------------------~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViD 154 (460)
T PRK11776 101 NIKVLTLCGGVPMGPQIDSL--------------------------EHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLD 154 (460)
T ss_pred CcEEEEEECCCChHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEE
Confidence 78888888876544333221 135689999999886532 22222356899999
Q ss_pred cccccCCcc--hHHHHHHHhccc-cceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhh
Q 000496 436 EGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 512 (1462)
Q Consensus 436 EAHrlKN~~--Sk~~~~l~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL 512 (1462)
|||++-... ..+...+..+.. ...+++|||+-. ++-.+.. . .+
T Consensus 155 Ead~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~----~~~~l~~---------------~---------------~~ 200 (460)
T PRK11776 155 EADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPE----GIAAISQ---------------R---------------FQ 200 (460)
T ss_pred CHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcH----HHHHHHH---------------H---------------hc
Confidence 999986542 234444444443 346899999611 1110000 0 00
Q ss_pred chhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCC
Q 000496 513 APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (1462)
Q Consensus 513 ~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~ 592 (1462)
. -| ..+.+.... ... . +. .+.+.
T Consensus 201 ~--------------~~----~~i~~~~~~--------------------~~~--~-------i~---~~~~~------- 223 (460)
T PRK11776 201 R--------------DP----VEVKVESTH--------------------DLP--A-------IE---QRFYE------- 223 (460)
T ss_pred C--------------CC----EEEEECcCC--------------------CCC--C-------ee---EEEEE-------
Confidence 0 00 000000000 000 0 00 00000
Q ss_pred cccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhc
Q 000496 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (1462)
Q Consensus 593 ~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~ 672 (1462)
+....|+..|..+|... .+.++||||+.....+.|.+.|...|+.+..++|.++..+|+.+++.|.+
T Consensus 224 -----------~~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~ 290 (460)
T PRK11776 224 -----------VSPDERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFAN 290 (460)
T ss_pred -----------eCcHHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 01122666677776542 45789999999999999999999999999999999999999999999986
Q ss_pred cCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCC
Q 000496 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1462)
Q Consensus 673 ~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1462)
+. ..+|++|.++++|||++.+++||+||.+.++..++|++||++|.|+.-. .|.|++.+
T Consensus 291 g~---~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~--ai~l~~~~ 349 (460)
T PRK11776 291 RS---CSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGL--ALSLVAPE 349 (460)
T ss_pred CC---CcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcce--EEEEEchh
Confidence 44 3489999999999999999999999999999999999999999997644 44555543
No 35
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.89 E-value=2.3e-21 Score=238.12 Aligned_cols=313 Identities=16% Similarity=0.211 Sum_probs=207.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHH-HHHHHhC-----CCCcEEEEEcc-hhHHHHHHHHHHHC
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGE-----RISPHLVVAPL-STLRNWEREFATWA 356 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~-l~~L~~~-----~~~p~LIVvP~-sll~qW~~E~~k~~ 356 (1462)
..+.++|.+++..+ ..+.++|+...+|+|||+.++.. +..+... +...+||++|. .+..|+.+.+..+.
T Consensus 22 ~~p~~iQ~~ai~~~----~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~ 97 (434)
T PRK11192 22 TRPTAIQAEAIPPA----LDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA 97 (434)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH
Confidence 35889999998766 46788999999999999986543 4444321 12378999997 67788887777665
Q ss_pred C--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcceeE
Q 000496 357 P--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCM 432 (1462)
Q Consensus 357 P--~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~w~~V 432 (1462)
. ++++..++|........... ...++|+|+|++.+.... ..+..-.+++|
T Consensus 98 ~~~~~~v~~~~gg~~~~~~~~~l--------------------------~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~l 151 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNHAEVF--------------------------SENQDIVVATPGRLLQYIKEENFDCRAVETL 151 (434)
T ss_pred ccCCcEEEEEECCCCHHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCcCcccCCEE
Confidence 3 57788888865443221110 135689999998876432 22233356789
Q ss_pred ecccccccCCcc--hHHHHHHHhcc-ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000496 433 IVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1462)
Q Consensus 433 IVDEAHrlKN~~--Sk~~~~l~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~ 509 (1462)
||||||++.... ..+...+..+. ....+++|||+-...+.++. ..+
T Consensus 152 ViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~------------------~~~------------- 200 (434)
T PRK11192 152 ILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFA------------------ERL------------- 200 (434)
T ss_pred EEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHH------------------HHH-------------
Confidence 999999986533 22222233332 23458999997321111110 000
Q ss_pred HhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCC
Q 000496 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1462)
Q Consensus 510 ~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~ 589 (1462)
+. ... .+.+....... ....|-+...
T Consensus 201 --~~----------------~~~--~i~~~~~~~~~--------------------------------~~i~~~~~~~-- 226 (434)
T PRK11192 201 --LN----------------DPV--EVEAEPSRRER--------------------------------KKIHQWYYRA-- 226 (434)
T ss_pred --cc----------------CCE--EEEecCCcccc--------------------------------cCceEEEEEe--
Confidence 00 000 00110000000 0000000000
Q ss_pred CCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHH
Q 000496 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1462)
Q Consensus 590 e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~ 669 (1462)
+ ....|..+|..++.. ....++|||++....++.|...|...|+....++|.++..+|..+++.
T Consensus 227 -----~---------~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~ 290 (434)
T PRK11192 227 -----D---------DLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKR 290 (434)
T ss_pred -----C---------CHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHH
Confidence 0 012345555555542 246799999999999999999999999999999999999999999999
Q ss_pred HhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEE
Q 000496 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1462)
Q Consensus 670 Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~Vy 730 (1462)
|..+ .+.+|++|.++++|||++.+++||+||+++++..++|++||++|.|....+.++
T Consensus 291 f~~G---~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l 348 (434)
T PRK11192 291 LTDG---RVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISL 348 (434)
T ss_pred HhCC---CCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEE
Confidence 9764 445899999999999999999999999999999999999999999987655543
No 36
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.89 E-value=1.1e-21 Score=240.24 Aligned_cols=313 Identities=17% Similarity=0.223 Sum_probs=209.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHH-HHHHhCC--------CCcEEEEEcc-hhHHHHHHHHHH
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER--------ISPHLVVAPL-STLRNWEREFAT 354 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l-~~L~~~~--------~~p~LIVvP~-sll~qW~~E~~k 354 (1462)
.+.|.|.+++.-+ ..+.++|+..++|+|||+..+..+ ..+.... ...+|||||. .+..||.+++..
T Consensus 30 ~pt~iQ~~aip~i----l~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLT----LAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHH----hCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 5789999998765 578999999999999999865443 3343211 1258999997 777899888877
Q ss_pred HCC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcce
Q 000496 355 WAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQ 430 (1462)
Q Consensus 355 ~~P--~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~w~ 430 (1462)
+.. ++++..++|........... ...++|+|+|++.+.... ..+.--.+.
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~~~l--------------------------~~~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQLKVL--------------------------ESGVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred HhccCCceEEEEECCCCHHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCccccccc
Confidence 653 56777777765433221111 124689999999885432 223333567
Q ss_pred eEecccccccCCcc--hHHHHHHHhcc---ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHH
Q 000496 431 CMIVDEGHRLKNKD--SKLFSSLKQYS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (1462)
Q Consensus 431 ~VIVDEAHrlKN~~--Sk~~~~l~~l~---~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i 505 (1462)
+|||||||++-... ..+...+..+. ....+++|||.-. .+.++.
T Consensus 160 ~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~-~~~~~~------------------------------ 208 (423)
T PRK04837 160 VVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSY-RVRELA------------------------------ 208 (423)
T ss_pred EEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCH-HHHHHH------------------------------
Confidence 89999999986533 23333344443 2235788999511 111100
Q ss_pred HHHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccc
Q 000496 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1462)
Q Consensus 506 ~~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L 585 (1462)
...+. -| .. +.+.-... ... . + .+.++
T Consensus 209 ---~~~~~--------------~p--~~--i~v~~~~~-------------------~~~--~-------i----~~~~~ 235 (423)
T PRK04837 209 ---FEHMN--------------NP--EY--VEVEPEQK-------------------TGH--R-------I----KEELF 235 (423)
T ss_pred ---HHHCC--------------CC--EE--EEEcCCCc-------------------CCC--c-------e----eEEEE
Confidence 00000 00 00 00000000 000 0 0 00000
Q ss_pred ccCCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Q 000496 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1462)
Q Consensus 586 ~~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~ 665 (1462)
. .....|+.+|..++.. ....++|||++....++.|...|...|+++..++|.++..+|..
T Consensus 236 ~-----------------~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~ 296 (423)
T PRK04837 236 Y-----------------PSNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLR 296 (423)
T ss_pred e-----------------CCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHH
Confidence 0 0112355566666654 24679999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecC
Q 000496 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1462)
Q Consensus 666 ~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~ 735 (1462)
+++.|+++. ..+|++|.++++|||++.+++||+||+++++..|+|++||++|.|+.-.+ +-|++.
T Consensus 297 ~l~~F~~g~---~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~a--i~~~~~ 361 (423)
T PRK04837 297 ILEEFTRGD---LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHS--ISLACE 361 (423)
T ss_pred HHHHHHcCC---CcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeE--EEEeCH
Confidence 999997644 34899999999999999999999999999999999999999999977544 344443
No 37
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.89 E-value=9e-21 Score=240.42 Aligned_cols=310 Identities=17% Similarity=0.238 Sum_probs=210.1
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHH-HHHHHHHhCCC-CcEEEEEcc-hhHHHHHHHHHHHC---C
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERI-SPHLVVAPL-STLRNWEREFATWA---P 357 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~L~~~~~-~p~LIVvP~-sll~qW~~E~~k~~---P 357 (1462)
.++.|+|.+++..+ ..+.++|+...||+|||++.+ .++..+..... ..+|||||. .+..||..++..+. +
T Consensus 27 ~~ptpiQ~~ai~~l----l~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 27 EKPSPIQAECIPHL----LNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 46899999998776 467899999999999999864 44444433322 268999997 77899999987764 6
Q ss_pred CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcceeEecc
Q 000496 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVD 435 (1462)
Q Consensus 358 ~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~w~~VIVD 435 (1462)
.++++.++|.......+... ....+|+|+|.+.+.... ..+.--...+||||
T Consensus 103 ~i~v~~~~gG~~~~~q~~~l--------------------------~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlD 156 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLRAL--------------------------RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLD 156 (629)
T ss_pred CceEEEEECCcCHHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCcchhhceEEEec
Confidence 78888888876443322221 124689999998875432 12222356789999
Q ss_pred cccccCCcc--hHHHHHHHhcccc-ceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhh
Q 000496 436 EGHRLKNKD--SKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 512 (1462)
Q Consensus 436 EAHrlKN~~--Sk~~~~l~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL 512 (1462)
|||.+-+.. ..+...+..+... ..+++|||.- ..+.++. ..|
T Consensus 157 EAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p-~~i~~i~------------------~~~---------------- 201 (629)
T PRK11634 157 EADEMLRMGFIEDVETIMAQIPEGHQTALFSATMP-EAIRRIT------------------RRF---------------- 201 (629)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCC-hhHHHHH------------------HHH----------------
Confidence 999886543 3344555555443 4588999951 1111100 000
Q ss_pred chhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCC
Q 000496 513 APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (1462)
Q Consensus 513 ~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~ 592 (1462)
+..... +.+.-. ..... ...+-|.
T Consensus 202 ---------------l~~~~~--i~i~~~---------------------~~~~~-----------~i~q~~~------- 225 (629)
T PRK11634 202 ---------------MKEPQE--VRIQSS---------------------VTTRP-----------DISQSYW------- 225 (629)
T ss_pred ---------------cCCCeE--EEccCc---------------------cccCC-----------ceEEEEE-------
Confidence 000000 000000 00000 0000000
Q ss_pred cccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhc
Q 000496 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (1462)
Q Consensus 593 ~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~ 672 (1462)
.+....|...|..+|.. ....++||||......+.|...|...|+....++|.++..+|..++++|..
T Consensus 226 ----------~v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~ 293 (629)
T PRK11634 226 ----------TVWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 (629)
T ss_pred ----------EechhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC
Confidence 00112244555555543 234689999999999999999999999999999999999999999999976
Q ss_pred cCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEE
Q 000496 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1462)
Q Consensus 673 ~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~V 729 (1462)
+ .+.+||+|.+++.|||++.+++||+||.+.++..++|++||++|.|..-.+.+
T Consensus 294 G---~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~ 347 (629)
T PRK11634 294 G---RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALL 347 (629)
T ss_pred C---CCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEE
Confidence 4 44589999999999999999999999999999999999999999997654443
No 38
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.89 E-value=4.4e-21 Score=241.79 Aligned_cols=309 Identities=16% Similarity=0.232 Sum_probs=207.8
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHH-HHHHhC------C--CCcEEEEEcc-hhHHHHHHHHH
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGE------R--ISPHLVVAPL-STLRNWEREFA 353 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l-~~L~~~------~--~~p~LIVvP~-sll~qW~~E~~ 353 (1462)
..+.|.|..++..+ ..++++|+..++|+|||+.++..+ ..+... . ...+|||||. .+..|+...+.
T Consensus 30 ~~ptpiQ~~~ip~~----l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~ 105 (572)
T PRK04537 30 TRCTPIQALTLPVA----LPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAV 105 (572)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 36889999999877 578999999999999999865544 444321 1 1378999997 77789999998
Q ss_pred HHCCC--CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc---ccCCCc
Q 000496 354 TWAPQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIK 428 (1462)
Q Consensus 354 k~~P~--l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~---~L~~i~ 428 (1462)
+|... +++..++|........... ...++|+|+|.+.+..... .+....
T Consensus 106 ~l~~~~~i~v~~l~Gg~~~~~q~~~l--------------------------~~~~dIiV~TP~rL~~~l~~~~~~~l~~ 159 (572)
T PRK04537 106 KFGADLGLRFALVYGGVDYDKQRELL--------------------------QQGVDVIIATPGRLIDYVKQHKVVSLHA 159 (572)
T ss_pred HHhccCCceEEEEECCCCHHHHHHHH--------------------------hCCCCEEEECHHHHHHHHHhccccchhh
Confidence 88744 5677777765432211110 1247899999998865422 222335
Q ss_pred ceeEecccccccCCcc--hHHHHHHHhcc---ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHH
Q 000496 429 WQCMIVDEGHRLKNKD--SKLFSSLKQYS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEE 503 (1462)
Q Consensus 429 w~~VIVDEAHrlKN~~--Sk~~~~l~~l~---~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~ 503 (1462)
..+|||||||++-... ..+...+..+. ....+++|||.- +.+.++ ..
T Consensus 160 v~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~-~~v~~l---~~------------------------ 211 (572)
T PRK04537 160 CEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLS-HRVLEL---AY------------------------ 211 (572)
T ss_pred eeeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCcc-HHHHHH---HH------------------------
Confidence 6789999999985432 22333344443 335688999951 111111 00
Q ss_pred HHHHHHHhh-chhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCC
Q 000496 504 QISRLHRML-APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCH 582 (1462)
Q Consensus 504 ~i~~L~~lL-~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~h 582 (1462)
..+ .|..+...... ..+......+.+.
T Consensus 212 ------~~l~~p~~i~v~~~~---~~~~~i~q~~~~~------------------------------------------- 239 (572)
T PRK04537 212 ------EHMNEPEKLVVETET---ITAARVRQRIYFP------------------------------------------- 239 (572)
T ss_pred ------HHhcCCcEEEecccc---ccccceeEEEEec-------------------------------------------
Confidence 000 00000000000 0000000000000
Q ss_pred cccccCCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHH
Q 000496 583 PYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAE 662 (1462)
Q Consensus 583 P~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~e 662 (1462)
....|+..|..++.. ..+.++|||++....++.|.+.|...|+.+..++|.++..+
T Consensus 240 ----------------------~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~e 295 (572)
T PRK04537 240 ----------------------ADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKK 295 (572)
T ss_pred ----------------------CHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHH
Confidence 011244444455443 34789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEE
Q 000496 663 RQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1462)
Q Consensus 663 Rq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~V 729 (1462)
|..+++.|.++ ...+||+|.++++|||++.+++||+||.++++..++|++||++|.|....+..
T Consensus 296 R~~il~~Fr~G---~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~ 359 (572)
T PRK04537 296 RESLLNRFQKG---QLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAIS 359 (572)
T ss_pred HHHHHHHHHcC---CCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEE
Confidence 99999999763 34589999999999999999999999999999999999999999998765443
No 39
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=2e-21 Score=223.91 Aligned_cols=341 Identities=18% Similarity=0.335 Sum_probs=236.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchh-HHHHHHHHHHHCC--C
Q 000496 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWAP--Q 358 (1462)
Q Consensus 282 ~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sl-l~qW~~E~~k~~P--~ 358 (1462)
+...+||||...++-| +.-...+.||+.-.+|.|||+..+..+..+. +.+||+|..++ +.||...|..|.- +
T Consensus 299 Pst~iRpYQEksL~KM-FGNgRARSGiIVLPCGAGKtLVGvTAa~tik----K~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 299 PSTQIRPYQEKSLSKM-FGNGRARSGIIVLPCGAGKTLVGVTAACTIK----KSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred cccccCchHHHHHHHH-hCCCcccCceEEEecCCCCceeeeeeeeeec----ccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 3468999999999877 2223345699999999999998776665443 36899999754 7999999999982 2
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh----------hhcccCCCc
Q 000496 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----------DSASLKPIK 428 (1462)
Q Consensus 359 l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~----------d~~~L~~i~ 428 (1462)
-.+..|..+..++ ......|+||||.|+.. ...++..-.
T Consensus 374 ~~i~rFTsd~Ke~-------------------------------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~E 422 (776)
T KOG1123|consen 374 DQICRFTSDAKER-------------------------------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGRE 422 (776)
T ss_pred cceEEeecccccc-------------------------------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCe
Confidence 3455555444332 12356699999999843 245678889
Q ss_pred ceeEecccccccCCcchHHHHH-HHhccccceEeeccccccCCHHHHHHHHHhhc-CCCCCChHHHHHHHhhhhhHHHHH
Q 000496 429 WQCMIVDEGHRLKNKDSKLFSS-LKQYSTRHRVLLTGTPLQNNLDELFMLMHFLD-AGKFGSLEEFQEEFKDINQEEQIS 506 (1462)
Q Consensus 429 w~~VIVDEAHrlKN~~Sk~~~~-l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~-p~~f~~~~~F~e~f~~~~~~~~i~ 506 (1462)
|.++|+||+|-+- .+.++. +..+.+..+|+||||-+..+ |-..=||||- |..+. ..+ .
T Consensus 423 WGllllDEVHvvP---A~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYE------AnW---------m 482 (776)
T KOG1123|consen 423 WGLLLLDEVHVVP---AKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYE------ANW---------M 482 (776)
T ss_pred eeeEEeehhccch---HHHHHHHHHHHHHHhhccceeEEeecc--ccccccceeecchhhh------ccH---------H
Confidence 9999999999874 344444 44456778899999986543 1122234442 33321 111 1
Q ss_pred HHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccc
Q 000496 507 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1462)
Q Consensus 507 ~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~ 586 (1462)
.|.+ ...+.......|+|+||+. +|+..+..+... ..+
T Consensus 483 dL~~--------------kGhIA~VqCaEVWCpMt~e---Fy~eYL~~~t~k--------r~l----------------- 520 (776)
T KOG1123|consen 483 DLQK--------------KGHIAKVQCAEVWCPMTPE---FYREYLRENTRK--------RML----------------- 520 (776)
T ss_pred HHHh--------------CCceeEEeeeeeecCCCHH---HHHHHHhhhhhh--------hhe-----------------
Confidence 1110 0123344566899999985 555554432110 000
Q ss_pred cCCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Q 000496 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1462)
Q Consensus 587 ~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~ 666 (1462)
..+-+..|++...-||+....+|.|+||||..+-.| ..|--..|-+| |.|.|++.+|-++
T Consensus 521 ---------------LyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfAL---k~YAikl~Kpf--IYG~Tsq~ERm~I 580 (776)
T KOG1123|consen 521 ---------------LYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFAL---KEYAIKLGKPF--IYGPTSQNERMKI 580 (776)
T ss_pred ---------------eeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHH---HHHHHHcCCce--EECCCchhHHHHH
Confidence 012245688888888888888999999999876654 44544445554 7899999999999
Q ss_pred HHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCC-ChhhHHHHHhhhhccCCC----CcEEEEEEecCCCHHHH
Q 000496 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQT----NKVMIFRLITRGSIEER 741 (1462)
Q Consensus 667 Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dW-NP~~d~QAigRahRiGQ~----k~V~VyrLvt~~TiEE~ 741 (1462)
++.|+..+.-.-+|| +++|...|+|+.|+.+|-..+.. +-.+..||+||+.|.-.. -.+..|-||+++|.|..
T Consensus 581 LqnFq~n~~vNTIFl--SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 581 LQNFQTNPKVNTIFL--SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred HHhcccCCccceEEE--eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 999987555444444 79999999999999999998875 567789999999996532 26889999999999865
Q ss_pred H
Q 000496 742 M 742 (1462)
Q Consensus 742 I 742 (1462)
.
T Consensus 659 Y 659 (776)
T KOG1123|consen 659 Y 659 (776)
T ss_pred h
Confidence 4
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.87 E-value=1.4e-20 Score=239.41 Aligned_cols=305 Identities=18% Similarity=0.183 Sum_probs=204.7
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCCCCeEE
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vv 362 (1462)
..++|+|.+++.-+ ..++++++..+||.|||+..+..+ +.. .+.+|||+|. +++.+|...+... +..+.
T Consensus 24 ~~~r~~Q~~ai~~i----l~g~dvlv~apTGsGKTl~y~lpa--l~~--~g~tlVisPl~sL~~dqv~~l~~~--gi~~~ 93 (607)
T PRK11057 24 QQFRPGQQEIIDAV----LSGRDCLVVMPTGGGKSLCYQIPA--LVL--DGLTLVVSPLISLMKDQVDQLLAN--GVAAA 93 (607)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCchHHHHHHHHH--HHc--CCCEEEEecHHHHHHHHHHHHHHc--CCcEE
Confidence 36999999999866 578899999999999998754322 222 2479999997 7788888888765 35555
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hcccCCCcceeEeccccccc
Q 000496 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRL 440 (1462)
Q Consensus 363 vy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d--~~~L~~i~w~~VIVDEAHrl 440 (1462)
.+.+..........+.- ......+++++|.+.+... ...+...++.+|||||||.+
T Consensus 94 ~~~s~~~~~~~~~~~~~----------------------~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i 151 (607)
T PRK11057 94 CLNSTQTREQQLEVMAG----------------------CRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCI 151 (607)
T ss_pred EEcCCCCHHHHHHHHHH----------------------HhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccc
Confidence 55554332221111100 0123567899999887642 23344456789999999998
Q ss_pred CCcch---HHHHHH----HhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhc
Q 000496 441 KNKDS---KLFSSL----KQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1462)
Q Consensus 441 KN~~S---k~~~~l----~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~ 513 (1462)
..... ..+..+ ..+.....++||||+-.....++...+.+-.|..+... |
T Consensus 152 ~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~------~----------------- 208 (607)
T PRK11057 152 SQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS------F----------------- 208 (607)
T ss_pred ccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECC------C-----------------
Confidence 65321 112222 23345567999999854444444433332221110000 0
Q ss_pred hhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000496 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1462)
Q Consensus 514 p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~ 593 (1462)
.-|.....++ .
T Consensus 209 -------------~r~nl~~~v~--------------------------------------------------~------ 219 (607)
T PRK11057 209 -------------DRPNIRYTLV--------------------------------------------------E------ 219 (607)
T ss_pred -------------CCCcceeeee--------------------------------------------------e------
Confidence 0000000000 0
Q ss_pred ccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcc
Q 000496 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1462)
Q Consensus 594 ~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~ 673 (1462)
...++..|..++.. ..+.++||||+.....+.+...|...|+++..++|+++..+|..+++.|..+
T Consensus 220 ------------~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g 285 (607)
T PRK11057 220 ------------KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRD 285 (607)
T ss_pred ------------ccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCC
Confidence 00011112222221 3578999999999999999999999999999999999999999999999764
Q ss_pred CCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEE
Q 000496 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1462)
Q Consensus 674 ~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~V 729 (1462)
. ..+|++|.+.|.|||++.+++||+||.+.+...+.|+.||++|.|....+.+
T Consensus 286 ~---~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~il 338 (607)
T PRK11057 286 D---LQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (607)
T ss_pred C---CCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEE
Confidence 3 3489999999999999999999999999999999999999999997755443
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.87 E-value=2.1e-20 Score=237.98 Aligned_cols=304 Identities=20% Similarity=0.222 Sum_probs=209.6
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCCCCeEE
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vv 362 (1462)
.+++|+|.++++-+ ..+++++++..||.|||+.+...+ +.. .+.+|||+|. +++.++...+... +..+.
T Consensus 12 ~~fr~~Q~~~i~~i----l~g~dvlv~~PTG~GKTl~y~lpa--l~~--~g~~lVisPl~sL~~dq~~~l~~~--gi~~~ 81 (591)
T TIGR01389 12 DDFRPGQEEIISHV----LDGRDVLVVMPTGGGKSLCYQVPA--LLL--KGLTVVISPLISLMKDQVDQLRAA--GVAAA 81 (591)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCccHhHHHHHHH--HHc--CCcEEEEcCCHHHHHHHHHHHHHc--CCcEE
Confidence 46999999999876 567899999999999999865332 222 3478999997 7888899888875 46666
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hcccCCCcceeEeccccccc
Q 000496 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRL 440 (1462)
Q Consensus 363 vy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d--~~~L~~i~w~~VIVDEAHrl 440 (1462)
.++++...........- ......+++++|++.+... ...+......+|||||||.+
T Consensus 82 ~~~s~~~~~~~~~~~~~----------------------l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i 139 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEKA----------------------LVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCV 139 (591)
T ss_pred EEeCCCCHHHHHHHHHH----------------------HhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCccc
Confidence 67665443221111000 0123578999999988542 23455567889999999998
Q ss_pred CCcch-------HHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhc
Q 000496 441 KNKDS-------KLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1462)
Q Consensus 441 KN~~S-------k~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~ 513 (1462)
..... .+......+.....++||||+-.....++...+.+-.+..+.+ .|
T Consensus 140 ~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~------~~----------------- 196 (591)
T TIGR01389 140 SQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFIT------SF----------------- 196 (591)
T ss_pred ccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec------CC-----------------
Confidence 64321 2333333444556899999985444444443333221111100 00
Q ss_pred hhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000496 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1462)
Q Consensus 514 p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~ 593 (1462)
.-|.....++.
T Consensus 197 -------------~r~nl~~~v~~-------------------------------------------------------- 207 (591)
T TIGR01389 197 -------------DRPNLRFSVVK-------------------------------------------------------- 207 (591)
T ss_pred -------------CCCCcEEEEEe--------------------------------------------------------
Confidence 00000000000
Q ss_pred ccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcc
Q 000496 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1462)
Q Consensus 594 ~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~ 673 (1462)
...+...+.++|... .+.++||||......+.|.++|...|+++..++|+++.++|..+++.|..+
T Consensus 208 ------------~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g 273 (591)
T TIGR01389 208 ------------KNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYD 273 (591)
T ss_pred ------------CCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 011222233333321 267899999999999999999999999999999999999999999999764
Q ss_pred CCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEE
Q 000496 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1462)
Q Consensus 674 ~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~ 728 (1462)
. +.+|++|.+.|.|||++.++.||+|+++.|+..+.|++||++|.|+...+.
T Consensus 274 ~---~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 274 D---VKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred C---CcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 3 458999999999999999999999999999999999999999999766554
No 42
>PTZ00424 helicase 45; Provisional
Probab=99.87 E-value=2.5e-20 Score=226.48 Aligned_cols=316 Identities=18% Similarity=0.261 Sum_probs=205.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC--CCCcEEEEEcc-hhHHHHHHHHHHHCCC--
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWAPQ-- 358 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~--~~~p~LIVvP~-sll~qW~~E~~k~~P~-- 358 (1462)
..+.|+|..++..+ ..+.+.|+..++|+|||+.++..+...... ....+|||+|. .+..|+.+.+..+...
T Consensus 49 ~~~~~~Q~~ai~~i----~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 124 (401)
T PTZ00424 49 EKPSAIQQRGIKPI----LDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLK 124 (401)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcC
Confidence 36899999998876 578899999999999999875444444332 22379999997 6677887777776533
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcceeEeccc
Q 000496 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 436 (1462)
Q Consensus 359 l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~w~~VIVDE 436 (1462)
..+....|....+..+... ....+|+|+|++.+.... ..+..-++++|||||
T Consensus 125 ~~~~~~~g~~~~~~~~~~~--------------------------~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDE 178 (401)
T PTZ00424 125 VRCHACVGGTVVRDDINKL--------------------------KAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDE 178 (401)
T ss_pred ceEEEEECCcCHHHHHHHH--------------------------cCCCCEEEECcHHHHHHHHhCCcccccccEEEEec
Confidence 4445555654433322111 123579999998875321 222233568999999
Q ss_pred ccccCCc--chHHHHHHHhccc-cceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhc
Q 000496 437 GHRLKNK--DSKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1462)
Q Consensus 437 AHrlKN~--~Sk~~~~l~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~ 513 (1462)
||++... ...+...++.+.. ...+++|||+- +...++. ..|. ..
T Consensus 179 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~~~------------------~~~~--------------~~ 225 (401)
T PTZ00424 179 ADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMP-NEILELT------------------TKFM--------------RD 225 (401)
T ss_pred HHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCC-HHHHHHH------------------HHHc--------------CC
Confidence 9998543 2345555555543 35688999962 1111100 0000 00
Q ss_pred hhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000496 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1462)
Q Consensus 514 p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~ 593 (1462)
|..+. .+.+- ..+.......+.+. .
T Consensus 226 ~~~~~-~~~~~-~~~~~~~~~~~~~~--~--------------------------------------------------- 250 (401)
T PTZ00424 226 PKRIL-VKKDE-LTLEGIRQFYVAVE--K--------------------------------------------------- 250 (401)
T ss_pred CEEEE-eCCCC-cccCCceEEEEecC--h---------------------------------------------------
Confidence 00000 00000 00000000000000 0
Q ss_pred ccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcc
Q 000496 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1462)
Q Consensus 594 ~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~ 673 (1462)
...++..+..++..+ ...++||||.....++.+...|...++.+..++|.++..+|+.+++.|.++
T Consensus 251 ------------~~~~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g 316 (401)
T PTZ00424 251 ------------EEWKFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSG 316 (401)
T ss_pred ------------HHHHHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 000222222232221 346899999999999999999999999999999999999999999999764
Q ss_pred CCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCC
Q 000496 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1462)
Q Consensus 674 ~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1462)
. ..+|++|.++++|||++.+++||+||++.++..++|++||++|.|.. -.++.|++..
T Consensus 317 ~---~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~ 374 (401)
T PTZ00424 317 S---TRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK--GVAINFVTPD 374 (401)
T ss_pred C---CCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCC--ceEEEEEcHH
Confidence 3 45899999999999999999999999999999999999999999865 3455566654
No 43
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=2.6e-20 Score=224.17 Aligned_cols=313 Identities=18% Similarity=0.266 Sum_probs=223.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHh------CCCCc-EEEEEcc-hhHHHHHHHHHHH
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFG------ERISP-HLVVAPL-STLRNWEREFATW 355 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~L~~------~~~~p-~LIVvP~-sll~qW~~E~~k~ 355 (1462)
.+.|-|..+.-.+ ..|+.+|....+|+|||+.- |-.+.++.. .+.+| +||++|+ .+..|-..++..+
T Consensus 113 ~PtpIQaq~wp~~----l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIA----LSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhccccee----ccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 4667777765444 67899999999999999873 555666654 12345 8999998 6778889999998
Q ss_pred CCCCe--EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hcccCCCccee
Q 000496 356 APQMN--VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQC 431 (1462)
Q Consensus 356 ~P~l~--vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d--~~~L~~i~w~~ 431 (1462)
...+. .++++|.......+++. ....+|+|+|...+... ...+.--...+
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~~l--------------------------~~gvdiviaTPGRl~d~le~g~~~l~~v~y 242 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLRDL--------------------------ERGVDVVIATPGRLIDLLEEGSLNLSRVTY 242 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHHHH--------------------------hcCCcEEEeCChHHHHHHHcCCccccceeE
Confidence 86654 77777776665555543 23578999999988653 23344345779
Q ss_pred EecccccccC--CcchHHHHHHHhc-ccc-ceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHH
Q 000496 432 MIVDEGHRLK--NKDSKLFSSLKQY-STR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1462)
Q Consensus 432 VIVDEAHrlK--N~~Sk~~~~l~~l-~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~ 507 (1462)
+|+|||.++- ....+..+.+..+ ... ..|+-|||= +.
T Consensus 243 lVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTw----p~----------------------------------- 283 (519)
T KOG0331|consen 243 LVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATW----PK----------------------------------- 283 (519)
T ss_pred EEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeec----cH-----------------------------------
Confidence 9999999985 4567788888888 333 357777772 00
Q ss_pred HHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccccc
Q 000496 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (1462)
Q Consensus 508 L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~ 587 (1462)
-+|.+..+++. -+....+.... . . .....+.++-..
T Consensus 284 --------~v~~lA~~fl~--~~~~i~ig~~~---~-~----------------------~a~~~i~qive~-------- 319 (519)
T KOG0331|consen 284 --------EVRQLAEDFLN--NPIQINVGNKK---E-L----------------------KANHNIRQIVEV-------- 319 (519)
T ss_pred --------HHHHHHHHHhc--CceEEEecchh---h-h----------------------hhhcchhhhhhh--------
Confidence 11111222221 11111111110 0 0 000011111111
Q ss_pred CCCCCcccchHHHHHHhhhchHHHHHHHHHHHHH-HcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Q 000496 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK-EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1462)
Q Consensus 588 ~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~-~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~ 666 (1462)
+...+|...|.++|.... ..+.||||||+.....+.|+..|...+|+...|+|..++.+|..+
T Consensus 320 ----------------~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~ 383 (519)
T KOG0331|consen 320 ----------------CDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWV 383 (519)
T ss_pred ----------------cCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHH
Confidence 224568888888888877 446699999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEE
Q 000496 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1462)
Q Consensus 667 Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~V 729 (1462)
++.|..+. +-+|++|..++.||++..+++||.||+|-|...|++|+||.+|-|++-....
T Consensus 384 L~~FreG~---~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~t 443 (519)
T KOG0331|consen 384 LKGFREGK---SPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAIT 443 (519)
T ss_pred HHhcccCC---cceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEE
Confidence 99996544 4599999999999999999999999999999999999999999888754443
No 44
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.85 E-value=8.2e-20 Score=234.43 Aligned_cols=311 Identities=16% Similarity=0.153 Sum_probs=204.8
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCCCCeEE
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vv 362 (1462)
..+||+|.++++.+ ..|+++|+...||.|||+....-+. .. .+.+|||+|+ +|+.++...+... .+.+.
T Consensus 459 ~sFRp~Q~eaI~ai----L~GrDVLVimPTGSGKSLcYQLPAL--~~--~GiTLVISPLiSLmqDQV~~L~~~--GI~Aa 528 (1195)
T PLN03137 459 HSFRPNQREIINAT----MSGYDVFVLMPTGGGKSLTYQLPAL--IC--PGITLVISPLVSLIQDQIMNLLQA--NIPAA 528 (1195)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCccHHHHHHHHHH--Hc--CCcEEEEeCHHHHHHHHHHHHHhC--CCeEE
Confidence 47999999999866 5789999999999999987543332 22 3579999997 7776566665542 56666
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh---hcccCC----CcceeEecc
Q 000496 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SASLKP----IKWQCMIVD 435 (1462)
Q Consensus 363 vy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d---~~~L~~----i~w~~VIVD 435 (1462)
.+.+............-. ......++++++|.+.+... ...+.. -...+||||
T Consensus 529 ~L~s~~s~~eq~~ilr~l--------------------~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVID 588 (1195)
T PLN03137 529 SLSAGMEWAEQLEILQEL--------------------SSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVID 588 (1195)
T ss_pred EEECCCCHHHHHHHHHHH--------------------HhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccC
Confidence 666654432221111000 00124678999999987532 111211 236789999
Q ss_pred cccccCCcchH---HHH----HHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000496 436 EGHRLKNKDSK---LFS----SLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1462)
Q Consensus 436 EAHrlKN~~Sk---~~~----~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L 508 (1462)
|||.+-..... -++ ....+.....++||||.-.....++...|.+..+..|. ..|
T Consensus 589 EAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr------~Sf------------ 650 (1195)
T PLN03137 589 EAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR------QSF------------ 650 (1195)
T ss_pred cchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee------ccc------------
Confidence 99998654321 122 22234455678999997555544444443322211110 000
Q ss_pred HHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000496 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1462)
Q Consensus 509 ~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~ 588 (1462)
.-|.....++ +-. .
T Consensus 651 ------------------~RpNL~y~Vv--~k~---k------------------------------------------- 664 (1195)
T PLN03137 651 ------------------NRPNLWYSVV--PKT---K------------------------------------------- 664 (1195)
T ss_pred ------------------CccceEEEEe--ccc---h-------------------------------------------
Confidence 0011001010 000 0
Q ss_pred CCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHH
Q 000496 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1462)
Q Consensus 589 ~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id 668 (1462)
..+..|.+++... ..+...||||......+.|..+|...|++...++|+++..+|..+++
T Consensus 665 -------------------k~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe 724 (1195)
T PLN03137 665 -------------------KCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQK 724 (1195)
T ss_pred -------------------hHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHH
Confidence 0001111222111 12457899999999999999999999999999999999999999999
Q ss_pred HHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEE
Q 000496 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (1462)
Q Consensus 669 ~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~Vyr 731 (1462)
.|..+. +.+|++|.|.|.|||++.+++||+|+.+-++..|.|++||++|.|+.-.+..|+
T Consensus 725 ~F~~Ge---i~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 725 QWSKDE---INIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred HHhcCC---CcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 997644 448999999999999999999999999999999999999999999987666554
No 45
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=7.1e-20 Score=207.45 Aligned_cols=322 Identities=21% Similarity=0.296 Sum_probs=227.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHH-HHHHHHHHHhCCCC-cEEEEEcchhH-HHHHHHHHHHCC--CC
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERIS-PHLVVAPLSTL-RNWEREFATWAP--QM 359 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiq-aIa~l~~L~~~~~~-p~LIVvP~sll-~qW~~E~~k~~P--~l 359 (1462)
.+.+.|.+++-.+ ..|+.+|.+.|+|+|||.. +|-++..|+.+... ..||++|.--+ .|-...|+.+.. ++
T Consensus 83 ~PT~IQ~~aiP~~----L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~igl 158 (476)
T KOG0330|consen 83 KPTKIQSEAIPVA----LGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGL 158 (476)
T ss_pred CCchhhhhhcchh----hCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCe
Confidence 4667888888665 6889999999999999988 67788888876544 56999998544 556666777753 57
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCC---cceeEeccc
Q 000496 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI---KWQCMIVDE 436 (1462)
Q Consensus 360 ~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i---~w~~VIVDE 436 (1462)
.+.++.|..+........ ..+.||+|.|...+......-+.+ ...++|+||
T Consensus 159 r~~~lvGG~~m~~q~~~L--------------------------~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQANQL--------------------------SKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EEEEEecCchHHHHHHHh--------------------------hcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 888888987766543332 246789999999987654422222 345799999
Q ss_pred ccccCCcc--hHHHHHHHhccccce-EeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhc
Q 000496 437 GHRLKNKD--SKLFSSLKQYSTRHR-VLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1462)
Q Consensus 437 AHrlKN~~--Sk~~~~l~~l~~~~r-LLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~ 513 (1462)
|.||-|.+ -.+...|+.++...+ +|.|||- .. .+.+|...
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATM-t~----------------------------------kv~kL~ra-- 255 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATM-TK----------------------------------KVRKLQRA-- 255 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeec-ch----------------------------------hhHHHHhh--
Confidence 99998864 467777777775544 6778883 11 11111100
Q ss_pred hhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000496 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1462)
Q Consensus 514 p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~ 593 (1462)
.+-. ++.|.-+. .| .++-.|.+ -||+-
T Consensus 256 -------------sl~~----p~~v~~s~----ky----------------------~tv~~lkQ----~ylfv------ 282 (476)
T KOG0330|consen 256 -------------SLDN----PVKVAVSS----KY----------------------QTVDHLKQ----TYLFV------ 282 (476)
T ss_pred -------------ccCC----CeEEeccc----hh----------------------cchHHhhh----heEec------
Confidence 0000 01111110 01 01111111 11111
Q ss_pred ccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcc
Q 000496 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1462)
Q Consensus 594 ~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~ 673 (1462)
...-|-..|..+|.++ .|..+||||......+.+.-+|+..|+....++|.++...|..+++.|++.
T Consensus 283 -----------~~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~ 349 (476)
T KOG0330|consen 283 -----------PGKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG 349 (476)
T ss_pred -----------cccccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc
Confidence 1112334556666654 468999999999999999999999999999999999999999999999875
Q ss_pred CCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCCCHHHHHHHHH
Q 000496 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (1462)
Q Consensus 674 ~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~~ 746 (1462)
.-+ +|++|+.++.|+|.+.+|+||.||.|-+-..|+.|.||+.|.| +.-.+..||+. +|-..+++.
T Consensus 350 ~r~---iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtq--yDve~~qrI 415 (476)
T KOG0330|consen 350 ARS---ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQ--YDVELVQRI 415 (476)
T ss_pred CCc---EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEeh--hhhHHHHHH
Confidence 444 8999999999999999999999999999999999999999999 55666778888 444444443
No 46
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.85 E-value=6.8e-20 Score=242.63 Aligned_cols=357 Identities=17% Similarity=0.211 Sum_probs=207.7
Q ss_pred CCCCCHHHHHHHHHHHHhhcc-CCcEEEEecCCCchHHHHHHHHHHHHhC-CCCcEEEEEcc-hhHHHHHHHHHHHCCCC
Q 000496 283 GGSLHPYQLEGLNFLRFSWSK-QTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPL-STLRNWEREFATWAPQM 359 (1462)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~-~~~~ILADemGLGKTiqaIa~l~~L~~~-~~~p~LIVvP~-sll~qW~~E~~k~~P~l 359 (1462)
+..|||||.++++.+...+.. .++++|.+.+|+|||+++++++..+... +.+++|||||. .|+.||..+|..+.+..
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 357999999999877666654 4678999999999999999999888765 34599999995 78899999999874321
Q ss_pred e-EE-EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc-------ccCCCcce
Q 000496 360 N-VV-MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-------SLKPIKWQ 430 (1462)
Q Consensus 360 ~-vv-vy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~-------~L~~i~w~ 430 (1462)
. .+ ...+... +... .......|+|+|++++.+... .+..-.|+
T Consensus 491 ~~~~~~i~~i~~----L~~~------------------------~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fd 542 (1123)
T PRK11448 491 DQTFASIYDIKG----LEDK------------------------FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYD 542 (1123)
T ss_pred ccchhhhhchhh----hhhh------------------------cccCCCCEEEEEHHHHHHhhhccccccccCCCCccc
Confidence 1 10 0011000 0000 001245799999999865421 12234688
Q ss_pred eEecccccccCCc-----------------chHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHH
Q 000496 431 CMIVDEGHRLKNK-----------------DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQ 493 (1462)
Q Consensus 431 ~VIVDEAHrlKN~-----------------~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~ 493 (1462)
+||||||||.... .++..+.+..+. ..+|+|||||..+. .++|. .| .+
T Consensus 543 lIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t-~~~FG-----~p-v~------- 607 (1123)
T PRK11448 543 CIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFD-AVKIGLTATPALHT-TEIFG-----EP-VY------- 607 (1123)
T ss_pred EEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcC-ccEEEEecCCccch-hHHhC-----Ce-eE-------
Confidence 9999999996321 123334444343 58899999997432 11111 00 00
Q ss_pred HHHhhhhhHHHHHHHHHhhchhhhhhhHhhHhhcCCCceeEEEe----ecCC-HHHHHHHHHHHHHHHHHHHhcCCchhh
Q 000496 494 EEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILR----VELS-SKQKEYYKAILTRNYQILTRRGGAQIS 568 (1462)
Q Consensus 494 e~f~~~~~~~~i~~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~----v~ls-~~Qk~~Y~~il~k~~~~l~~~~~~~~~ 568 (1462)
...-.+.+. ..+++ ..-||....... +... ..+...|...... +....
T Consensus 608 ----~Ysl~eAI~------DG~Lv--------~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~----i~~~~----- 660 (1123)
T PRK11448 608 ----TYSYREAVI------DGYLI--------DHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGE----IDLAT----- 660 (1123)
T ss_pred ----EeeHHHHHh------cCCcc--------cCcCCEEEEEEeccccccccccchhhhcchhhhh----hhhcc-----
Confidence 000001110 01111 001333222111 0111 1111112111100 00000
Q ss_pred HHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHhhhchHHH-HHHHHHHHHHH-cCCeEEEEecchhhHHHHHHHHHh
Q 000496 569 LINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQ-LLDKMMVKLKE-QGHRVLIYSQFQHMLDLLEDYLTF 646 (1462)
Q Consensus 569 l~nil~~LRk~c~hP~L~~~~e~~~~~~~~~~~~li~~SgKl~-~L~klL~~l~~-~g~KVLIFSq~~~~ldiLed~L~~ 646 (1462)
.+.........+...+-...... ++..++..+.. .+.|+||||.....++.+.+.|..
T Consensus 661 --------------------l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~ 720 (1123)
T PRK11448 661 --------------------LEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKE 720 (1123)
T ss_pred --------------------CcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHH
Confidence 00000000000011111111111 22233333322 236999999999998888877754
Q ss_pred c------CC---eEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhh
Q 000496 647 K------KW---QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMAR 717 (1462)
Q Consensus 647 ~------gi---~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigR 717 (1462)
. ++ .+..|+|+++ +++.+|++|.++... .+|+++...++|+|.+.+++||++.+.-++..+.|++||
T Consensus 721 ~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p--~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGR 796 (1123)
T PRK11448 721 AFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLP--NIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGR 796 (1123)
T ss_pred HHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCC--eEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhh
Confidence 2 22 3567999885 578899999764332 589999999999999999999999999999999999999
Q ss_pred hhccCC---CCcEEEEEEe
Q 000496 718 AHRLGQ---TNKVMIFRLI 733 (1462)
Q Consensus 718 ahRiGQ---~k~V~VyrLv 733 (1462)
+.|..- +....||.++
T Consensus 797 gtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 797 ATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred hccCCccCCCceEEEEehH
Confidence 999865 5677888875
No 47
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.84 E-value=2.9e-21 Score=194.98 Aligned_cols=143 Identities=30% Similarity=0.480 Sum_probs=125.7
Q ss_pred CCccCHHHHHHHHHHHHhhccchhHHhhhCcccChHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCchhhhhcCCCCCC
Q 000496 1081 GKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPVPGASSQAPNGANSANPEALQMQGNSTGN 1160 (1462)
Q Consensus 1081 ~~~w~~eeDr~LL~~i~k~Gyg~We~Ik~D~~l~l~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1160 (1462)
..+|+..||+|||.||..||||+|+.|.+||++.| +|-||.+....|
T Consensus 3 ~~iw~r~hdywll~gi~~hgy~rwqdi~nd~~f~I-------iNEPFk~e~~kg-------------------------- 49 (173)
T PF08074_consen 3 YEIWHRRHDYWLLAGIVKHGYGRWQDIQNDPRFAI-------INEPFKTESQKG-------------------------- 49 (173)
T ss_pred hhhhhhhhhHHHHhHHhhccchhHHHHhcCCceee-------eccccccccccc--------------------------
Confidence 36899999999999999999999999999999666 555554432221
Q ss_pred CcccccccCccccccchhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCCCCCCCcccccc
Q 000496 1161 DSAAAGVQGTTDAANQAQVYQDSSVLYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDDVKSNEIPSEEPESERKT 1240 (1462)
Q Consensus 1161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 (1462)
+|.+|++| |+.+||+|||+||.+|.|.+.++
T Consensus 50 ---------------------------nfle~KNk---FLaRRfKLLEQaLvIEEqLrRAa------------------- 80 (173)
T PF08074_consen 50 ---------------------------NFLEMKNK---FLARRFKLLEQALVIEEQLRRAA------------------- 80 (173)
T ss_pred ---------------------------chHHHHHH---HHHHHHHHHHHHHhhhccccchh-------------------
Confidence 68899999 99999999999999999999888
Q ss_pred cCCCCCCccccchhhhhccCcccccChHHHhhhhcCCCccchhhhHHHHHHHHHhhccchhhhhhhccCCchhhhHHhhh
Q 000496 1241 TERPSPTSMEIDSQMVDQLPKLEAITSEEISAAACDSDADRLGLAQHYNEMCKVLEENVHEVVKTSLTSQPASAQLRTNL 1320 (1462)
Q Consensus 1241 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 (1462)
..+.+.-+.++.|. +++.|.++.++.+.+.+-+-.+.+||+||...|+++|
T Consensus 81 --~lnl~~~p~~p~~~---------------------------L~~~fae~e~laeshq~l~kes~~gnk~a~~vl~kvL 131 (173)
T PF08074_consen 81 --YLNLSQDPSHPVMA---------------------------LNARFAELECLAESHQHLSKESLAGNKPANAVLHKVL 131 (173)
T ss_pred --hccCcCCCCCchHH---------------------------HhhhhhhhhhccchhhhcchhhhCCCCCccHHHHHHH
Confidence 56666667777777 9999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhhc
Q 000496 1321 QLLETLCEDVNQIL 1334 (1462)
Q Consensus 1321 ~~~~~~~~~~~~~~ 1334 (1462)
.|||.|.+||-.-.
T Consensus 132 ~qleelLsDMKaDV 145 (173)
T PF08074_consen 132 NQLEELLSDMKADV 145 (173)
T ss_pred HHHHHHHHHhhccc
Confidence 99999999997643
No 48
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.84 E-value=6.7e-19 Score=224.97 Aligned_cols=305 Identities=16% Similarity=0.255 Sum_probs=198.6
Q ss_pred CCCCHHHHHHHHHHHHhhccC--CcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCC--C
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--Q 358 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~--~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P--~ 358 (1462)
.+|.++|..++..+....... .+.+|..++|+|||+.++..+......+ ..+||++|+ .+..|+.+++.++++ +
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g-~qvlilaPT~~LA~Q~~~~~~~l~~~~g 312 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG-YQVALMAPTEILAEQHYNSLRNLLAPLG 312 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC-CcEEEECCHHHHHHHHHHHHHHHhcccC
Confidence 579999999998886654332 4689999999999998765554444432 389999998 666899999999986 4
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEeccccc
Q 000496 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1462)
Q Consensus 359 l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEAH 438 (1462)
+++.+++|+..........+. ......+|+|+|+..+.... .+. +..+|||||+|
T Consensus 313 i~v~lltg~~~~~~r~~~~~~----------------------i~~g~~~IiVgT~~ll~~~~-~~~--~l~lvVIDEaH 367 (630)
T TIGR00643 313 IEVALLTGSLKGKRRKELLET----------------------IASGQIHLVVGTHALIQEKV-EFK--RLALVIIDEQH 367 (630)
T ss_pred cEEEEEecCCCHHHHHHHHHH----------------------HhCCCCCEEEecHHHHhccc-ccc--ccceEEEechh
Confidence 788888887544321111100 01246789999999875422 222 45799999999
Q ss_pred ccCCcchHHHHHHHh-cc---ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhch
Q 000496 439 RLKNKDSKLFSSLKQ-YS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1462)
Q Consensus 439 rlKN~~Sk~~~~l~~-l~---~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~p 514 (1462)
++.-. ....+.. .. ..+.|++||||+...+. +..+ ..+.
T Consensus 368 ~fg~~---qr~~l~~~~~~~~~~~~l~~SATp~prtl~----l~~~----------------~~l~-------------- 410 (630)
T TIGR00643 368 RFGVE---QRKKLREKGQGGFTPHVLVMSATPIPRTLA----LTVY----------------GDLD-------------- 410 (630)
T ss_pred hccHH---HHHHHHHhcccCCCCCEEEEeCCCCcHHHH----HHhc----------------CCcc--------------
Confidence 97422 2222322 22 56789999999653211 0000 0000
Q ss_pred hhhhhhHhhHhhcCCCcee--EEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCC
Q 000496 515 HLLRRVKKDVMKELPPKKE--LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (1462)
Q Consensus 515 ~~LRR~K~dV~~~LPpk~e--~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~ 592 (1462)
..+...+|+... ....+.-..
T Consensus 411 -------~~~i~~~p~~r~~i~~~~~~~~~-------------------------------------------------- 433 (630)
T TIGR00643 411 -------TSIIDELPPGRKPITTVLIKHDE-------------------------------------------------- 433 (630)
T ss_pred -------eeeeccCCCCCCceEEEEeCcch--------------------------------------------------
Confidence 000112222110 000010000
Q ss_pred cccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchh--------hHHHHHHHHHh--cCCeEEEEecCCCHHH
Q 000496 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQH--------MLDLLEDYLTF--KKWQYERIDGKVGGAE 662 (1462)
Q Consensus 593 ~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~--------~ldiLed~L~~--~gi~~~rIdGst~~~e 662 (1462)
+ ..+...+.+....|++++|||.... .+..+.+.|.. .++++..++|.++..+
T Consensus 434 ----------------~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~e 496 (630)
T TIGR00643 434 ----------------K-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDE 496 (630)
T ss_pred ----------------H-HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHH
Confidence 0 1111222233345788888887542 23344445543 4788999999999999
Q ss_pred HHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCC-ChhhHHHHHhhhhccCCCCcEE
Q 000496 663 RQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKVM 728 (1462)
Q Consensus 663 Rq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dW-NP~~d~QAigRahRiGQ~k~V~ 728 (1462)
|..+++.|.++. ..+|++|.+.++|||++.+++||+++.+. +-..+.|+.||++|-|..-.+.
T Consensus 497 R~~i~~~F~~g~---~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 497 KEAVMEEFREGE---VDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred HHHHHHHHHcCC---CCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE
Confidence 999999998644 34899999999999999999999999984 6788999999999998765444
No 49
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.84 E-value=8e-19 Score=230.88 Aligned_cols=322 Identities=19% Similarity=0.221 Sum_probs=201.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHH-HHHHHHHhCC------CC-cEEEEEcc-hhHHHHHHH---
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGER------IS-PHLVVAPL-STLRNWERE--- 351 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~L~~~~------~~-p~LIVvP~-sll~qW~~E--- 351 (1462)
..|+|+|.+++..+ ..+.++|+..+||+|||+.++ .++..+.... .+ .+|+|+|+ ++..|+.+.
T Consensus 31 ~~~tpiQ~~Ai~~i----l~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLI----HEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 35999999998765 678899999999999999865 4444454321 12 58999997 666666553
Q ss_pred ----HHHHC-------CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh
Q 000496 352 ----FATWA-------PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD 420 (1462)
Q Consensus 352 ----~~k~~-------P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d 420 (1462)
+..++ +.+++.+.+|+.......+.. ....+|+|||++.+...
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l--------------------------~~~p~IlVtTPE~L~~l 160 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKML--------------------------KKPPHILITTPESLAIL 160 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHH--------------------------hCCCCEEEecHHHHHHH
Confidence 33332 367888888876543321110 12568999999988432
Q ss_pred h------cccCCCcceeEecccccccCCcc--hHHHHHH---Hhcc--ccceEeeccccccCCHHHHHHHHHhhcCCCCC
Q 000496 421 S------ASLKPIKWQCMIVDEGHRLKNKD--SKLFSSL---KQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFG 487 (1462)
Q Consensus 421 ~------~~L~~i~w~~VIVDEAHrlKN~~--Sk~~~~l---~~l~--~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~ 487 (1462)
. ..|. ...+|||||+|.+.+.. ..+...+ ..+. ...+++||||. .++.++.. ||......
T Consensus 161 l~~~~~~~~l~--~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va~---~L~~~~~~ 233 (876)
T PRK13767 161 LNSPKFREKLR--TVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVAK---FLVGYEDD 233 (876)
T ss_pred hcChhHHHHHh--cCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHHH---HhcCcccc
Confidence 1 1222 34679999999997532 2222222 2222 34679999996 33444332 22211000
Q ss_pred ChHHHHHHHhhhhhHHHHHHHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchh
Q 000496 488 SLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQI 567 (1462)
Q Consensus 488 ~~~~F~e~f~~~~~~~~i~~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~ 567 (1462)
. .-++..+ +...........+.++...
T Consensus 234 ~----------------------~~r~~~i------v~~~~~k~~~i~v~~p~~~------------------------- 260 (876)
T PRK13767 234 G----------------------EPRDCEI------VDARFVKPFDIKVISPVDD------------------------- 260 (876)
T ss_pred C----------------------CCCceEE------EccCCCccceEEEeccCcc-------------------------
Confidence 0 0000000 0000000000001000000
Q ss_pred hHHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHh-
Q 000496 568 SLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF- 646 (1462)
Q Consensus 568 ~l~nil~~LRk~c~hP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~- 646 (1462)
+.... . ......+.+.|..+...++++||||+.....+.+...|..
T Consensus 261 -----------------l~~~~------~----------~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~ 307 (876)
T PRK13767 261 -----------------LIHTP------A----------EEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKR 307 (876)
T ss_pred -----------------ccccc------c----------chhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHh
Confidence 00000 0 0001112234444455688999999999999999888875
Q ss_pred -----cCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhcc
Q 000496 647 -----KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1462)
Q Consensus 647 -----~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRi 721 (1462)
.+..+..++|+++.++|..+++.|.++. +.+|++|.++++|||++.+|+||+|+++.+...++|++||++|-
T Consensus 308 ~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~---i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 308 FPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGE---LKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHR 384 (876)
T ss_pred chhhccccceeeeeCCCCHHHHHHHHHHHHcCC---CeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCC
Confidence 2467899999999999999999997643 45899999999999999999999999999999999999999976
Q ss_pred -CCCCcEEEEE
Q 000496 722 -GQTNKVMIFR 731 (1462)
Q Consensus 722 -GQ~k~V~Vyr 731 (1462)
|....-.++-
T Consensus 385 ~g~~~~g~ii~ 395 (876)
T PRK13767 385 LGEVSKGRIIV 395 (876)
T ss_pred CCCCCcEEEEE
Confidence 4444555554
No 50
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.84 E-value=9.8e-19 Score=225.96 Aligned_cols=331 Identities=17% Similarity=0.187 Sum_probs=213.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHH-HHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHC-CCCeE
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQMNV 361 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~-P~l~v 361 (1462)
.|+++|.+++..+ ..|.++|+...||+|||+..+ .++..+........|||+|+ .+..|-.+++..+. .++++
T Consensus 36 ~p~~~Q~~ai~~i----l~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v 111 (742)
T TIGR03817 36 RPWQHQARAAELA----HAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRP 111 (742)
T ss_pred cCCHHHHHHHHHH----HCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEE
Confidence 6999999999876 678999999999999999864 45555544333479999997 66678888888875 35788
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--------cccCCCcceeEe
Q 000496 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--------ASLKPIKWQCMI 433 (1462)
Q Consensus 362 vvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--------~~L~~i~w~~VI 433 (1462)
.+|.|+...... .. + ....+|+|||.+++.... ..|. +..+||
T Consensus 112 ~~~~Gdt~~~~r-~~--i------------------------~~~~~IivtTPd~L~~~~L~~~~~~~~~l~--~l~~vV 162 (742)
T TIGR03817 112 ATYDGDTPTEER-RW--A------------------------REHARYVLTNPDMLHRGILPSHARWARFLR--RLRYVV 162 (742)
T ss_pred EEEeCCCCHHHH-HH--H------------------------hcCCCEEEEChHHHHHhhccchhHHHHHHh--cCCEEE
Confidence 888887653221 00 0 123589999999986321 1122 236899
Q ss_pred cccccccCCc-chHHHHHHHhc---c-----ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHH
Q 000496 434 VDEGHRLKNK-DSKLFSSLKQY---S-----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ 504 (1462)
Q Consensus 434 VDEAHrlKN~-~Sk~~~~l~~l---~-----~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~ 504 (1462)
|||||++.+. .+.+...+..+ . ....+++|||- +++.++.. .+...
T Consensus 163 iDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi--~n~~~~~~---~l~g~-------------------- 217 (742)
T TIGR03817 163 IDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATT--ADPAAAAS---RLIGA-------------------- 217 (742)
T ss_pred EeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCC--CCHHHHHH---HHcCC--------------------
Confidence 9999998652 33333333332 1 23568999994 23333221 11000
Q ss_pred HHHHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcc
Q 000496 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY 584 (1462)
Q Consensus 505 i~~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~ 584 (1462)
|+.+ ... ...|......+.+..... . + ....
T Consensus 218 ---------~~~~--i~~---~~~~~~~~~~~~~~p~~~-----~-~----------~~~~------------------- 248 (742)
T TIGR03817 218 ---------PVVA--VTE---DGSPRGARTVALWEPPLT-----E-L----------TGEN------------------- 248 (742)
T ss_pred ---------CeEE--ECC---CCCCcCceEEEEecCCcc-----c-c----------cccc-------------------
Confidence 0000 000 011111111111110000 0 0 0000
Q ss_pred cccCCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhc--------CCeEEEEec
Q 000496 585 MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--------KWQYERIDG 656 (1462)
Q Consensus 585 L~~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~--------gi~~~rIdG 656 (1462)
.. .... .....+..+|..++ ..+.++|||++.....+.|..+|... +.++..++|
T Consensus 249 ---~~--~~r~--------~~~~~~~~~l~~l~----~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hg 311 (742)
T TIGR03817 249 ---GA--PVRR--------SASAEAADLLADLV----AEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRA 311 (742)
T ss_pred ---cc--cccc--------chHHHHHHHHHHHH----HCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheec
Confidence 00 0000 00112333333333 45889999999999999999888653 567888999
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCC
Q 000496 657 KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1462)
Q Consensus 657 st~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1462)
+++.++|.+++++|.+ +.+.+|++|.++++|||+...|+||+|+.|-+...+.|++||++|.|+... ++.++..+
T Consensus 312 g~~~~eR~~ie~~f~~---G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~ 386 (742)
T TIGR03817 312 GYLPEDRRELERALRD---GELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDD 386 (742)
T ss_pred CCCHHHHHHHHHHHHc---CCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCC
Confidence 9999999999999975 445689999999999999999999999999999999999999999997643 44456666
Q ss_pred CHHHHHHH
Q 000496 737 SIEERMMQ 744 (1462)
Q Consensus 737 TiEE~I~e 744 (1462)
..|..++.
T Consensus 387 ~~d~~~~~ 394 (742)
T TIGR03817 387 PLDTYLVH 394 (742)
T ss_pred hHHHHHHh
Confidence 77776554
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.84 E-value=9.1e-19 Score=225.22 Aligned_cols=305 Identities=16% Similarity=0.217 Sum_probs=199.2
Q ss_pred CCCCHHHHHHHHHHHHhhccC--CcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCCC--
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ-- 358 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~--~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~-- 358 (1462)
.+|+++|..++.-+...+..+ .+.+|..++|+|||+.++..+......+ ..+||++|+ .+..|+.+.|.++++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g-~q~lilaPT~~LA~Q~~~~l~~l~~~~~ 338 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAG-YQAALMAPTEILAEQHYENLKKLLEPLG 338 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 579999999998886655432 4789999999999998875555444332 379999998 6668899999999865
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEeccccc
Q 000496 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1462)
Q Consensus 359 l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEAH 438 (1462)
+++.+++|+............ ......+|+|+|+..+.... .+. +..+|||||+|
T Consensus 339 i~v~ll~G~~~~~~r~~~~~~----------------------l~~g~~~IvVgT~~ll~~~v-~~~--~l~lvVIDE~H 393 (681)
T PRK10917 339 IRVALLTGSLKGKERREILEA----------------------IASGEADIVIGTHALIQDDV-EFH--NLGLVIIDEQH 393 (681)
T ss_pred cEEEEEcCCCCHHHHHHHHHH----------------------HhCCCCCEEEchHHHhcccc-hhc--ccceEEEechh
Confidence 778888887653221111100 01236789999998875321 232 45789999999
Q ss_pred ccCCcchHHHHHHHhc-cccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhhh
Q 000496 439 RLKNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1462)
Q Consensus 439 rlKN~~Sk~~~~l~~l-~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~p~~L 517 (1462)
++. ......+... ...+.|+|||||+...+. +.. |.. +...
T Consensus 394 rfg---~~qr~~l~~~~~~~~iL~~SATp~prtl~----~~~----------------~g~-------------~~~s-- 435 (681)
T PRK10917 394 RFG---VEQRLALREKGENPHVLVMTATPIPRTLA----MTA----------------YGD-------------LDVS-- 435 (681)
T ss_pred hhh---HHHHHHHHhcCCCCCEEEEeCCCCHHHHH----HHH----------------cCC-------------CceE--
Confidence 973 2233334433 246789999999542210 000 000 0000
Q ss_pred hhhHhhHhhcCCCcee--EEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCccc
Q 000496 518 RRVKKDVMKELPPKKE--LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (1462)
Q Consensus 518 RR~K~dV~~~LPpk~e--~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~~ 595 (1462)
+...+|+... ....+.
T Consensus 436 ------~i~~~p~~r~~i~~~~~~-------------------------------------------------------- 453 (681)
T PRK10917 436 ------VIDELPPGRKPITTVVIP-------------------------------------------------------- 453 (681)
T ss_pred ------EEecCCCCCCCcEEEEeC--------------------------------------------------------
Confidence 0011222100 000000
Q ss_pred chHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchh--------hHHHHHHHHHhc--CCeEEEEecCCCHHHHHH
Q 000496 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQH--------MLDLLEDYLTFK--KWQYERIDGKVGGAERQI 665 (1462)
Q Consensus 596 ~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~--------~ldiLed~L~~~--gi~~~rIdGst~~~eRq~ 665 (1462)
..+...+.+.+....+.|++++|||..+. .+..+.+.|... ++++..++|+++..+|+.
T Consensus 454 -----------~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~ 522 (681)
T PRK10917 454 -----------DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDA 522 (681)
T ss_pred -----------cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHH
Confidence 00001112223333367889999997542 233445555443 578999999999999999
Q ss_pred HHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCC-ChhhHHHHHhhhhccCCCCcEE
Q 000496 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKVM 728 (1462)
Q Consensus 666 ~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dW-NP~~d~QAigRahRiGQ~k~V~ 728 (1462)
++++|.++. ..+|++|.+.++|||++.+++||+++++. ....+.|+.||++|-|....|.
T Consensus 523 i~~~F~~g~---~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 583 (681)
T PRK10917 523 VMAAFKAGE---IDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCV 583 (681)
T ss_pred HHHHHHcCC---CCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEE
Confidence 999998643 34899999999999999999999999974 5688999999999988764443
No 52
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.83 E-value=1.7e-18 Score=225.83 Aligned_cols=308 Identities=17% Similarity=0.206 Sum_probs=203.0
Q ss_pred CCCCHHHHHHHHHHHHhhccC--CcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCCCC-
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM- 359 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~--~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l- 359 (1462)
.++.|+|..++..+..-...+ .+.++..++|+|||..++..+......+ ..+||+||+ .+..|....|.++++.+
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g-~qvlvLvPT~~LA~Q~~~~f~~~~~~~~ 528 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-KQVAVLVPTTLLAQQHFETFKERFANFP 528 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC-CeEEEEeCcHHHHHHHHHHHHHHhccCC
Confidence 468999999999886654443 5789999999999998765444333333 479999997 66688889999887654
Q ss_pred -eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEeccccc
Q 000496 360 -NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1462)
Q Consensus 360 -~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEAH 438 (1462)
++.+++|...........+ .....+.+|||+|+..+.... .+. +..+|||||+|
T Consensus 529 i~v~~Lsg~~~~~e~~~~~~----------------------~l~~g~~dIVIGTp~ll~~~v-~f~--~L~llVIDEah 583 (926)
T TIGR00580 529 VTIELLSRFRSAKEQNEILK----------------------ELASGKIDILIGTHKLLQKDV-KFK--DLGLLIIDEEQ 583 (926)
T ss_pred cEEEEEeccccHHHHHHHHH----------------------HHHcCCceEEEchHHHhhCCC-Ccc--cCCEEEeeccc
Confidence 5556666543222111100 001235789999997764322 222 45789999999
Q ss_pred ccCCcchHHHHHHHhcc-ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhhh
Q 000496 439 RLKNKDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1462)
Q Consensus 439 rlKN~~Sk~~~~l~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~p~~L 517 (1462)
++.- .....++.+. ..+.|+|||||+...+.. .+..+ ..+.++
T Consensus 584 rfgv---~~~~~L~~~~~~~~vL~~SATpiprtl~~---~l~g~------------------------------~d~s~I 627 (926)
T TIGR00580 584 RFGV---KQKEKLKELRTSVDVLTLSATPIPRTLHM---SMSGI------------------------------RDLSII 627 (926)
T ss_pred ccch---hHHHHHHhcCCCCCEEEEecCCCHHHHHH---HHhcC------------------------------CCcEEE
Confidence 9742 3344555554 457899999995432211 00000 000000
Q ss_pred hhhHhhHhhcCCCceeEEE---eecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000496 518 RRVKKDVMKELPPKKELIL---RVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1462)
Q Consensus 518 RR~K~dV~~~LPpk~e~iv---~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~ 594 (1462)
..||.....+ .++.+.
T Consensus 628 ---------~~~p~~R~~V~t~v~~~~~---------------------------------------------------- 646 (926)
T TIGR00580 628 ---------ATPPEDRLPVRTFVMEYDP---------------------------------------------------- 646 (926)
T ss_pred ---------ecCCCCccceEEEEEecCH----------------------------------------------------
Confidence 1111110000 000000
Q ss_pred cchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhc--CCeEEEEecCCCHHHHHHHHHHHhc
Q 000496 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNA 672 (1462)
Q Consensus 595 ~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~--gi~~~rIdGst~~~eRq~~Id~Fn~ 672 (1462)
..+...++.. ..+|.+++||++.+...+.+.+.|... ++++..++|.++..+|..++.+|.+
T Consensus 647 ---------------~~i~~~i~~e-l~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~ 710 (926)
T TIGR00580 647 ---------------ELVREAIRRE-LLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK 710 (926)
T ss_pred ---------------HHHHHHHHHH-HHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc
Confidence 0000011122 235789999999999999999999874 7899999999999999999999986
Q ss_pred cCCCCceEEeeccccccccCcccCCEEEEecCC-CChhhHHHHHhhhhccCCCCcEEEEEEecC
Q 000496 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1462)
Q Consensus 673 ~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~d-WNP~~d~QAigRahRiGQ~k~V~VyrLvt~ 735 (1462)
+. +.+|++|.+.+.|||++.+++||+++.+ +....+.|+.||++|.|.. -.+|.|+..
T Consensus 711 Gk---~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~--g~aill~~~ 769 (926)
T TIGR00580 711 GE---FQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK--AYAYLLYPH 769 (926)
T ss_pred CC---CCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC--eEEEEEECC
Confidence 44 4489999999999999999999999986 4567889999999998765 444555544
No 53
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.82 E-value=1.2e-18 Score=231.78 Aligned_cols=302 Identities=19% Similarity=0.208 Sum_probs=199.2
Q ss_pred CCCCHHHHHHHHHHHHhhcc--CCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCCC--
Q 000496 284 GSLHPYQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ-- 358 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~--~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~-- 358 (1462)
.++.+.|..++.-+...... ..+.+++.+||+|||.+++..+...... ...+||+||+ .+..|..+.|.+++..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~ 677 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-HKQVAVLVPTTLLAQQHYDNFRDRFANWP 677 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-CCeEEEEeCcHHHHHHHHHHHHHhhccCC
Confidence 47899999999876554433 3678999999999999876443333222 3489999998 5557888888876644
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEeccccc
Q 000496 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1462)
Q Consensus 359 l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEAH 438 (1462)
+++.+++|...........+- ......+|+|+|++.+..+. .--+..+|||||+|
T Consensus 678 v~i~~l~g~~s~~e~~~il~~----------------------l~~g~~dIVVgTp~lL~~~v---~~~~L~lLVIDEah 732 (1147)
T PRK10689 678 VRIEMLSRFRSAKEQTQILAE----------------------AAEGKIDILIGTHKLLQSDV---KWKDLGLLIVDEEH 732 (1147)
T ss_pred ceEEEEECCCCHHHHHHHHHH----------------------HHhCCCCEEEECHHHHhCCC---CHhhCCEEEEechh
Confidence 455566665433221111000 01235789999998775322 22356799999999
Q ss_pred ccCCcchHHHHHHHhcc-ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhhh
Q 000496 439 RLKNKDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1462)
Q Consensus 439 rlKN~~Sk~~~~l~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~p~~L 517 (1462)
++.. .....++.+. ....|++||||++..+.- .+.++ ..+.++
T Consensus 733 rfG~---~~~e~lk~l~~~~qvLl~SATpiprtl~l---~~~gl------------------------------~d~~~I 776 (1147)
T PRK10689 733 RFGV---RHKERIKAMRADVDILTLTATPIPRTLNM---AMSGM------------------------------RDLSII 776 (1147)
T ss_pred hcch---hHHHHHHhcCCCCcEEEEcCCCCHHHHHH---HHhhC------------------------------CCcEEE
Confidence 9832 2334455554 457899999996543211 00110 000000
Q ss_pred hhhHhhHhhcCCCceeE---EEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000496 518 RRVKKDVMKELPPKKEL---ILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1462)
Q Consensus 518 RR~K~dV~~~LPpk~e~---iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~ 594 (1462)
..|+.... .+......
T Consensus 777 ---------~~~p~~r~~v~~~~~~~~~---------------------------------------------------- 795 (1147)
T PRK10689 777 ---------ATPPARRLAVKTFVREYDS---------------------------------------------------- 795 (1147)
T ss_pred ---------ecCCCCCCCceEEEEecCc----------------------------------------------------
Confidence 01111000 00000000
Q ss_pred cchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhc--CCeEEEEecCCCHHHHHHHHHHHhc
Q 000496 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNA 672 (1462)
Q Consensus 595 ~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~--gi~~~rIdGst~~~eRq~~Id~Fn~ 672 (1462)
......++..+. +|.+|+||++.+..++.+.+.|... ++++..++|.++..+|.+++.+|.+
T Consensus 796 ---------------~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~ 859 (1147)
T PRK10689 796 ---------------LVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 859 (1147)
T ss_pred ---------------HHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh
Confidence 000112233332 4678999999999999999999876 7899999999999999999999986
Q ss_pred cCCCCceEEeeccccccccCcccCCEEEEecCC-CChhhHHHHHhhhhccCCCCcE
Q 000496 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKV 727 (1462)
Q Consensus 673 ~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~d-WNP~~d~QAigRahRiGQ~k~V 727 (1462)
+. +.+|++|.+.+.|||++.+++||+.+++ |+...+.|+.||++|.|.+-.+
T Consensus 860 Gk---~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a 912 (1147)
T PRK10689 860 QR---FNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA 912 (1147)
T ss_pred cC---CCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEE
Confidence 44 4489999999999999999999998876 6778899999999999876433
No 54
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=3.4e-18 Score=213.12 Aligned_cols=329 Identities=20% Similarity=0.333 Sum_probs=224.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHH-HHHHHHHHHh--CCCCc-EEEEEcc-hhHHHHHHHHHHHCC-
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFG--ERISP-HLVVAPL-STLRNWEREFATWAP- 357 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiq-aIa~l~~L~~--~~~~p-~LIVvP~-sll~qW~~E~~k~~P- 357 (1462)
..+.|.|..++--+ ..++..|....+|+|||.. .|.+|..+.. ....+ .||++|+ .+..|-.+++..+..
T Consensus 50 ~~pt~IQ~~~IP~~----l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~ 125 (513)
T COG0513 50 EEPTPIQLAAIPLI----LAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN 125 (513)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhh
Confidence 46889999998765 5779999999999999977 3455555442 22223 9999998 666788888877764
Q ss_pred --CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hcccCCCcceeEe
Q 000496 358 --QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMI 433 (1462)
Q Consensus 358 --~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d--~~~L~~i~w~~VI 433 (1462)
.+++++++|...-...+... . ...||||.|...+... ...|..-...++|
T Consensus 126 ~~~~~~~~i~GG~~~~~q~~~l-------------------------~-~~~~ivVaTPGRllD~i~~~~l~l~~v~~lV 179 (513)
T COG0513 126 LGGLRVAVVYGGVSIRKQIEAL-------------------------K-RGVDIVVATPGRLLDLIKRGKLDLSGVETLV 179 (513)
T ss_pred cCCccEEEEECCCCHHHHHHHH-------------------------h-cCCCEEEECccHHHHHHHcCCcchhhcCEEE
Confidence 57788888876555444332 1 1488999999988643 2234444567899
Q ss_pred cccccccCCcc--hHHHHHHHhccc-cceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHH
Q 000496 434 VDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1462)
Q Consensus 434 VDEAHrlKN~~--Sk~~~~l~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~ 510 (1462)
+|||.++-+.. ..+...+..+.. ...++.|||--. .+.++. . .
T Consensus 180 lDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~-~i~~l~---~------------------------------~ 225 (513)
T COG0513 180 LDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPD-DIRELA---R------------------------------R 225 (513)
T ss_pred eccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCH-HHHHHH---H------------------------------H
Confidence 99999997653 345555555554 566889999511 111110 0 0
Q ss_pred hh-chhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCC
Q 000496 511 ML-APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1462)
Q Consensus 511 lL-~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~ 589 (1462)
.+ .|..+...........+......+.|.-
T Consensus 226 ~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~------------------------------------------------- 256 (513)
T COG0513 226 YLNDPVEIEVSVEKLERTLKKIKQFYLEVES------------------------------------------------- 256 (513)
T ss_pred HccCCcEEEEccccccccccCceEEEEEeCC-------------------------------------------------
Confidence 00 1110000000000011111111111110
Q ss_pred CCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHH
Q 000496 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1462)
Q Consensus 590 e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~ 669 (1462)
...|+.+|..++..... .++|||+......+.|...|...|+++..|+|++++.+|.++++.
T Consensus 257 ----------------~~~k~~~L~~ll~~~~~--~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~ 318 (513)
T COG0513 257 ----------------EEEKLELLLKLLKDEDE--GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEK 318 (513)
T ss_pred ----------------HHHHHHHHHHHHhcCCC--CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHH
Confidence 01467777777765432 379999999999999999999999999999999999999999999
Q ss_pred HhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCCCHHHHHHHHHHHH
Q 000496 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKK 749 (1462)
Q Consensus 670 Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~~~kK 749 (1462)
|+++. +-+|++|.++++||++...++||.||.+.++..|++|+||.+|.|.+- ..+.|++. .-|...+..+.+.
T Consensus 319 F~~g~---~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 319 FKDGE---LRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred HHcCC---CCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCC--eEEEEeCc-HHHHHHHHHHHHH
Confidence 98543 448999999999999999999999999999999999999999999554 44456655 2355555555554
No 55
>PRK02362 ski2-like helicase; Provisional
Probab=99.77 E-value=2.5e-17 Score=214.57 Aligned_cols=317 Identities=20% Similarity=0.189 Sum_probs=198.8
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHH-HHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCC-CCe
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMN 360 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa-~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P-~l~ 360 (1462)
.+|+|+|.+++.-+ +..+.++|++..||+|||+.+.. ++..+. ..+++|+|+|. +++.|+.++|.++.+ +++
T Consensus 22 ~~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~--~~~kal~i~P~raLa~q~~~~~~~~~~~g~~ 96 (737)
T PRK02362 22 EELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA--RGGKALYIVPLRALASEKFEEFERFEELGVR 96 (737)
T ss_pred CcCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHHHHhhcCCCE
Confidence 36999999998642 35789999999999999999854 444443 23489999996 788999999988753 578
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc----ccCCCcceeEeccc
Q 000496 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----SLKPIKWQCMIVDE 436 (1462)
Q Consensus 361 vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~----~L~~i~w~~VIVDE 436 (1462)
+.+++|+...... .....+|+|+|++.+..-.. .+. ...+|||||
T Consensus 97 v~~~tGd~~~~~~-----------------------------~l~~~~IiV~Tpek~~~llr~~~~~l~--~v~lvViDE 145 (737)
T PRK02362 97 VGISTGDYDSRDE-----------------------------WLGDNDIIVATSEKVDSLLRNGAPWLD--DITCVVVDE 145 (737)
T ss_pred EEEEeCCcCcccc-----------------------------ccCCCCEEEECHHHHHHHHhcChhhhh--hcCEEEEEC
Confidence 8888886432110 01346899999987743221 122 357999999
Q ss_pred ccccCCcc--hHHHHHH---Hhc-cccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHH
Q 000496 437 GHRLKNKD--SKLFSSL---KQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1462)
Q Consensus 437 AHrlKN~~--Sk~~~~l---~~l-~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~ 510 (1462)
+|.+.+.. ..+-..+ +.+ .....++||||. .|..++.. +|....+.+
T Consensus 146 ~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl--~n~~~la~---wl~~~~~~~---------------------- 198 (737)
T PRK02362 146 VHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATI--GNADELAD---WLDAELVDS---------------------- 198 (737)
T ss_pred ccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccC--CCHHHHHH---HhCCCcccC----------------------
Confidence 99996532 2222222 222 234578999996 34555443 222211100
Q ss_pred hhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCC
Q 000496 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1462)
Q Consensus 511 lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e 590 (1462)
..+|.-+ ...+.... . ++ . ... +..+
T Consensus 199 ~~rpv~l--------------~~~v~~~~--~----~~----------~---~~~----------------~~~~----- 224 (737)
T PRK02362 199 EWRPIDL--------------REGVFYGG--A----IH----------F---DDS----------------QREV----- 224 (737)
T ss_pred CCCCCCC--------------eeeEecCC--e----ec----------c---ccc----------------cccC-----
Confidence 0011100 00000000 0 00 0 000 0000
Q ss_pred CCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhc-----------------------
Q 000496 591 PDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK----------------------- 647 (1462)
Q Consensus 591 ~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~----------------------- 647 (1462)
....+.. ...++......+.++|||++.......+...|...
T Consensus 225 --------------~~~~~~~-~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~ 289 (737)
T PRK02362 225 --------------EVPSKDD-TLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREV 289 (737)
T ss_pred --------------CCccchH-HHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence 0000000 11122223346789999999888766665555321
Q ss_pred -------------CCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEE----ec-----CC
Q 000496 648 -------------KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YD-----SD 705 (1462)
Q Consensus 648 -------------gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi----~D-----~d 705 (1462)
...+..++|+++..+|..+.+.|.+ +.+.+|++|.+++.|||+++..+||. || .+
T Consensus 290 ~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~---G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~ 366 (737)
T PRK02362 290 SDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRD---RLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQP 366 (737)
T ss_pred cCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHc---CCCeEEEechhhhhhcCCCceEEEEecceeecCCCCcee
Confidence 1357788999999999999999976 44568999999999999999887776 77 47
Q ss_pred CChhhHHHHHhhhhccCCCCcEEEEEEecC
Q 000496 706 WNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1462)
Q Consensus 706 WNP~~d~QAigRahRiGQ~k~V~VyrLvt~ 735 (1462)
.++..+.|++|||+|.|....-.++-++..
T Consensus 367 ~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 367 IPVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred CCHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 788999999999999998765555555543
No 56
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.77 E-value=4.5e-17 Score=195.20 Aligned_cols=328 Identities=14% Similarity=0.204 Sum_probs=196.7
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCC-CCcEEEEEcc-hhHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCC
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKN 384 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~-~~p~LIVvP~-sll~qW~~E~~k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~ 384 (1462)
.++..++|+|||.+++.++....... ..++++|+|. +++.|+.+.+..++.. ++..++|...... .... .+.
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~-~~~~----~~~ 75 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKR-IKEM----GDS 75 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHH-Hhcc----CCc
Confidence 57899999999999887776655433 3589999996 8889999999988744 5666666543211 0000 000
Q ss_pred chhhhccccCccccccccccccccEEEecHHHHHhhhcc-cC-------CCcceeEecccccccCCcch-HHHHHHHhcc
Q 000496 385 PKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-LK-------PIKWQCMIVDEGHRLKNKDS-KLFSSLKQYS 455 (1462)
Q Consensus 385 ~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~-L~-------~i~w~~VIVDEAHrlKN~~S-k~~~~l~~l~ 455 (1462)
...... .. ............+++++|.+.+...... +. .+...+||+||+|.+..... .+...+..+.
T Consensus 76 -~~~~~~-~~-~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~ 152 (358)
T TIGR01587 76 -EEFEHL-FP-LYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK 152 (358)
T ss_pred -hhHHHH-HH-HHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 000000 00 0000001123567999999987653222 21 22336899999999875322 2333333332
Q ss_pred --ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhhhhhhHhhHhhcCCCcee
Q 000496 456 --TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKE 533 (1462)
Q Consensus 456 --~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~p~~LRR~K~dV~~~LPpk~e 533 (1462)
....+++|||+- ..+ ..| +..+.. ......+
T Consensus 153 ~~~~~~i~~SATlp----~~l-------------------~~~---------------~~~~~~-----~~~~~~~---- 185 (358)
T TIGR01587 153 DNDVPILLMSATLP----KFL-------------------KEY---------------AEKIGY-----VEFNEPL---- 185 (358)
T ss_pred HcCCCEEEEecCch----HHH-------------------HHH---------------HhcCCC-----cccccCC----
Confidence 235689999961 000 000 000000 0000000
Q ss_pred EEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHhhhchHHHHH
Q 000496 534 LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLL 613 (1462)
Q Consensus 534 ~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L 613 (1462)
..... +....|++..... ....|...+
T Consensus 186 -----~~~~~---------------------------------~~~~~~~~~~~~~---------------~~~~~~~~l 212 (358)
T TIGR01587 186 -----DLKEE---------------------------------RRFERHRFIKIES---------------DKVGEISSL 212 (358)
T ss_pred -----CCccc---------------------------------cccccccceeecc---------------ccccCHHHH
Confidence 00000 0000122111000 011244455
Q ss_pred HHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCC--eEEEEecCCCHHHHHHH----HHHHhccCCCCceEEeecccc
Q 000496 614 DKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKW--QYERIDGKVGGAERQIR----IDRFNAKNSSRFCFLLSTRAG 687 (1462)
Q Consensus 614 ~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi--~~~rIdGst~~~eRq~~----Id~Fn~~~s~~fvfLlSTrag 687 (1462)
.+++..+ ..+.++|||++.....+.+...|...+. .+..++|.++..+|.+. ++.|.+ +...+|++|.+.
T Consensus 213 ~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~---~~~~ilvaT~~~ 288 (358)
T TIGR01587 213 ERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK---NEKFVIVATQVI 288 (358)
T ss_pred HHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC---CCCeEEEECcch
Confidence 5555443 4578999999999999999999987766 48999999999999764 788865 334589999999
Q ss_pred ccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCC----cEEEEEEecCC---CHHHHHHHHHHHHH
Q 000496 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN----KVMIFRLITRG---SIEERMMQMTKKKM 750 (1462)
Q Consensus 688 g~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k----~V~VyrLvt~~---TiEE~I~e~~~kK~ 750 (1462)
+.|||+. +++||.++.+ +..++|++||++|.|... .|.||.....+ .++..++++...++
T Consensus 289 ~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~~~~ 355 (358)
T TIGR01587 289 EASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTIQKL 355 (358)
T ss_pred hceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHHHHH
Confidence 9999994 8999988765 889999999999999764 45555554444 56666766665554
No 57
>PRK00254 ski2-like helicase; Provisional
Probab=99.76 E-value=1.9e-16 Score=205.89 Aligned_cols=317 Identities=20% Similarity=0.204 Sum_probs=195.2
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCC-CCe
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMN 360 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P-~l~ 360 (1462)
.+|+|+|.+++.-. +..+.++|++..+|+|||+.+ ++++..+.. ..+.+|+|+|. +++.++.++|..|.. +.+
T Consensus 22 ~~l~~~Q~~ai~~~---~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~ 97 (720)
T PRK00254 22 EELYPPQAEALKSG---VLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-EGGKAVYLVPLKALAEEKYREFKDWEKLGLR 97 (720)
T ss_pred CCCCHHHHHHHHHH---HhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-cCCeEEEEeChHHHHHHHHHHHHHHhhcCCE
Confidence 36999999998631 267899999999999999998 455555443 33589999997 777889988887753 467
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh----cccCCCcceeEeccc
Q 000496 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS----ASLKPIKWQCMIVDE 436 (1462)
Q Consensus 361 vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~----~~L~~i~w~~VIVDE 436 (1462)
+..++|+...... .....+|+|+|++.+.... ..+. +..+|||||
T Consensus 98 v~~~~Gd~~~~~~-----------------------------~~~~~~IiV~Tpe~~~~ll~~~~~~l~--~l~lvViDE 146 (720)
T PRK00254 98 VAMTTGDYDSTDE-----------------------------WLGKYDIIIATAEKFDSLLRHGSSWIK--DVKLVVADE 146 (720)
T ss_pred EEEEeCCCCCchh-----------------------------hhccCCEEEEcHHHHHHHHhCCchhhh--cCCEEEEcC
Confidence 7778876432110 0135689999998874422 1222 457899999
Q ss_pred ccccCC--cchHHHHHHHhcc-ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhc
Q 000496 437 GHRLKN--KDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1462)
Q Consensus 437 AHrlKN--~~Sk~~~~l~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~ 513 (1462)
+|.+.. ....+...+..+. ....++||||. .|..++.. +|....+.. ..+
T Consensus 147 ~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl--~n~~~la~---wl~~~~~~~----------------------~~r 199 (720)
T PRK00254 147 IHLIGSYDRGATLEMILTHMLGRAQILGLSATV--GNAEELAE---WLNAELVVS----------------------DWR 199 (720)
T ss_pred cCccCCccchHHHHHHHHhcCcCCcEEEEEccC--CCHHHHHH---HhCCccccC----------------------CCC
Confidence 999864 3344444455543 34568999996 23455443 222211100 000
Q ss_pred hhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000496 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1462)
Q Consensus 514 p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~ 593 (1462)
| .|-... ++ ..-. ..+. .+..
T Consensus 200 p-------------v~l~~~-~~-~~~~----~~~~-------------~~~~--------------------------- 220 (720)
T PRK00254 200 P-------------VKLRKG-VF-YQGF----LFWE-------------DGKI--------------------------- 220 (720)
T ss_pred C-------------Ccceee-Ee-cCCe----eecc-------------Ccch---------------------------
Confidence 1 010000 00 0000 0000 0000
Q ss_pred ccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHh---------------------------
Q 000496 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--------------------------- 646 (1462)
Q Consensus 594 ~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~--------------------------- 646 (1462)
... ...+.+++..+...+.++|||++.......+...|..
T Consensus 221 -------~~~------~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (720)
T PRK00254 221 -------ERF------PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTN 287 (720)
T ss_pred -------hcc------hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCc
Confidence 000 0001122223334578899999887655443333311
Q ss_pred ------cCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEE-------ecC-CCChhhHH
Q 000496 647 ------KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-------YDS-DWNPHADL 712 (1462)
Q Consensus 647 ------~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi-------~D~-dWNP~~d~ 712 (1462)
....+..++|+++.++|..+.+.|.++ .+.+|++|.+++.|+|+++.++||. ++. +.....+.
T Consensus 288 ~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G---~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~ 364 (720)
T PRK00254 288 EKLKKALRGGVAFHHAGLGRTERVLIEDAFREG---LIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQ 364 (720)
T ss_pred HHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCC---CCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHH
Confidence 123578899999999999999999753 4568999999999999998887774 222 22345789
Q ss_pred HHHhhhhccCCCCcEEEEEEecCCC
Q 000496 713 QAMARAHRLGQTNKVMIFRLITRGS 737 (1462)
Q Consensus 713 QAigRahRiGQ~k~V~VyrLvt~~T 737 (1462)
|++|||+|.|..+.-.++.+++...
T Consensus 365 Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 365 QMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HhhhccCCCCcCCCceEEEEecCcc
Confidence 9999999998776666666665543
No 58
>PRK01172 ski2-like helicase; Provisional
Probab=99.75 E-value=7.5e-17 Score=208.56 Aligned_cols=303 Identities=19% Similarity=0.206 Sum_probs=189.6
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCC-CCeE
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMNV 361 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P-~l~v 361 (1462)
.+|+|+|.++++.+ ..+.++|++.+||+|||+++...+......+ +.+++|+|. ++..++.+++.++.. +..+
T Consensus 21 ~~l~~~Q~~ai~~l----~~~~nvlv~apTGSGKTl~a~lail~~l~~~-~k~v~i~P~raLa~q~~~~~~~l~~~g~~v 95 (674)
T PRK01172 21 FELYDHQRMAIEQL----RKGENVIVSVPTAAGKTLIAYSAIYETFLAG-LKSIYIVPLRSLAMEKYEELSRLRSLGMRV 95 (674)
T ss_pred CCCCHHHHHHHHHH----hcCCcEEEECCCCchHHHHHHHHHHHHHHhC-CcEEEEechHHHHHHHHHHHHHHhhcCCeE
Confidence 46999999999865 6788999999999999998765554443332 478999997 777888999887652 4566
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----hcccCCCcceeEecccc
Q 000496 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKWQCMIVDEG 437 (1462)
Q Consensus 362 vvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d----~~~L~~i~w~~VIVDEA 437 (1462)
....|+...... .....+++|+|++.+..- ...+. ++++|||||+
T Consensus 96 ~~~~G~~~~~~~-----------------------------~~~~~dIiv~Tpek~~~l~~~~~~~l~--~v~lvViDEa 144 (674)
T PRK01172 96 KISIGDYDDPPD-----------------------------FIKRYDVVILTSEKADSLIHHDPYIIN--DVGLIVADEI 144 (674)
T ss_pred EEEeCCCCCChh-----------------------------hhccCCEEEECHHHHHHHHhCChhHHh--hcCEEEEecc
Confidence 666665432100 012468999999876432 11222 4579999999
Q ss_pred cccCCcc--hHHHHHHH---hcc-ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHh
Q 000496 438 HRLKNKD--SKLFSSLK---QYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1462)
Q Consensus 438 HrlKN~~--Sk~~~~l~---~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~l 511 (1462)
|.+.... ..+-..+. .+. ....++||||+ .|..++. .++....+.. .
T Consensus 145 H~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl--~n~~~la---~wl~~~~~~~----------------------~ 197 (674)
T PRK01172 145 HIIGDEDRGPTLETVLSSARYVNPDARILALSATV--SNANELA---QWLNASLIKS----------------------N 197 (674)
T ss_pred hhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCcc--CCHHHHH---HHhCCCccCC----------------------C
Confidence 9986432 22222222 222 23568999996 2344432 2222211100 0
Q ss_pred hchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000496 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1462)
Q Consensus 512 L~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~ 591 (1462)
.+ ..| ....++... ..| .+....
T Consensus 198 ~r-------------~vp-l~~~i~~~~------~~~-------------------------------------~~~~~~ 220 (674)
T PRK01172 198 FR-------------PVP-LKLGILYRK------RLI-------------------------------------LDGYER 220 (674)
T ss_pred CC-------------CCC-eEEEEEecC------eee-------------------------------------eccccc
Confidence 00 011 111111000 000 000000
Q ss_pred CcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhc------------------------
Q 000496 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK------------------------ 647 (1462)
Q Consensus 592 ~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~------------------------ 647 (1462)
.+ ..+..++......+.++|||+........+...|...
T Consensus 221 ----------------~~-~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~ 283 (674)
T PRK01172 221 ----------------SQ-VDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEM 283 (674)
T ss_pred ----------------cc-ccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHH
Confidence 00 0022334444456788999999888777666666432
Q ss_pred -CCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecC---------CCChhhHHHHHhh
Q 000496 648 -KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDS---------DWNPHADLQAMAR 717 (1462)
Q Consensus 648 -gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~---------dWNP~~d~QAigR 717 (1462)
...+..++|+++.++|..+.+.|.++ .+.+|++|.+++.|+|+++ .+||+++. ++++..+.|++||
T Consensus 284 l~~gv~~~hagl~~~eR~~ve~~f~~g---~i~VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GR 359 (674)
T PRK01172 284 LPHGVAFHHAGLSNEQRRFIEEMFRNR---YIKVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGR 359 (674)
T ss_pred HhcCEEEecCCCCHHHHHHHHHHHHcC---CCeEEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhc
Confidence 12356789999999999999999753 4458999999999999986 67787664 3577889999999
Q ss_pred hhccCCCCcE
Q 000496 718 AHRLGQTNKV 727 (1462)
Q Consensus 718 ahRiGQ~k~V 727 (1462)
|+|.|....-
T Consensus 360 AGR~g~d~~g 369 (674)
T PRK01172 360 AGRPGYDQYG 369 (674)
T ss_pred CCCCCCCCcc
Confidence 9999976553
No 59
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.74 E-value=2.9e-16 Score=201.35 Aligned_cols=362 Identities=15% Similarity=0.119 Sum_probs=202.0
Q ss_pred CCCCHHHHHHHHHHHHhhcc------CCcEEEEecCCCchHHHHHHHHHHHHhCC-CCcEEEEEcc-hhHHHHHHHHHHH
Q 000496 284 GSLHPYQLEGLNFLRFSWSK------QTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPL-STLRNWEREFATW 355 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~------~~~~ILADemGLGKTiqaIa~l~~L~~~~-~~p~LIVvP~-sll~qW~~E~~k~ 355 (1462)
.-.|+||..+|+-+...+.. .++|+|.+.+|+|||++++.++..+.... ...+|||||. .|..||.++|..+
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 34789999999988777654 46899999999999999999988877543 3489999996 7889999999998
Q ss_pred CCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh-hcccCCC----cce
Q 000496 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD-SASLKPI----KWQ 430 (1462)
Q Consensus 356 ~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d-~~~L~~i----~w~ 430 (1462)
.+.... +.. +...+... .......|+|||.+.+... ...+..+ ...
T Consensus 317 ~~~~~~----~~~-s~~~L~~~------------------------l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~ 367 (667)
T TIGR00348 317 QKDCAE----RIE-SIAELKRL------------------------LEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEV 367 (667)
T ss_pred CCCCCc----ccC-CHHHHHHH------------------------HhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCE
Confidence 753111 111 11111110 0012356999999999752 1112221 123
Q ss_pred eEecccccccCCcchHHHHHHH-hccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000496 431 CMIVDEGHRLKNKDSKLFSSLK-QYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1462)
Q Consensus 431 ~VIVDEAHrlKN~~Sk~~~~l~-~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~ 509 (1462)
+||+|||||... ......++ .++..++++|||||+...-.+-+ ..|...|+.
T Consensus 368 lvIvDEaHrs~~--~~~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~--------------~~f~~~fg~----------- 420 (667)
T TIGR00348 368 VVIFDEAHRSQY--GELAKNLKKALKNASFFGFTGTPIFKKDRDTS--------------LTFAYVFGR----------- 420 (667)
T ss_pred EEEEEcCccccc--hHHHHHHHhhCCCCcEEEEeCCCccccccccc--------------ccccCCCCC-----------
Confidence 899999998642 33445553 56678999999999754211111 111100110
Q ss_pred HhhchhhhhhhHhhHhhcCCCceeEEEeec--CCHHHHHHHHHHHHHHHHHHHhcCCc--hhhHHHHHHHHHHHhCCccc
Q 000496 510 RMLAPHLLRRVKKDVMKELPPKKELILRVE--LSSKQKEYYKAILTRNYQILTRRGGA--QISLINVVMELRKLCCHPYM 585 (1462)
Q Consensus 510 ~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~--ls~~Qk~~Y~~il~k~~~~l~~~~~~--~~~l~nil~~LRk~c~hP~L 585 (1462)
.+..|-+....+| ..+.|..+..+.+. ++... .+..+............. ...+......+...
T Consensus 421 -~i~~Y~~~~AI~d--G~~~~i~Y~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------ 488 (667)
T TIGR00348 421 -YLHRYFITDAIRD--GLTVKIDYEDRLPEDHLDRKK---LDAFFDEIFELLPERIREITKESLKEKLQKTKKI------ 488 (667)
T ss_pred -eEEEeeHHHHhhc--CCeeeEEEEecchhhccChHH---HHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhh------
Confidence 0111111111111 01122222222221 11111 111111111100000000 00111111111111
Q ss_pred ccCCCCCcccchHHHHHHhhhchHHHHHHHHH-HH----HHHcCCeEEEEecchhhHHHHHHHHHhc-----CCeEEEEe
Q 000496 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMM-VK----LKEQGHRVLIYSQFQHMLDLLEDYLTFK-----KWQYERID 655 (1462)
Q Consensus 586 ~~~~e~~~~~~~~~~~~li~~SgKl~~L~klL-~~----l~~~g~KVLIFSq~~~~ldiLed~L~~~-----gi~~~rId 655 (1462)
+.+...+..+.+.+ .. ....+.|.+|||.....+..+.+.|... +...+.++
T Consensus 489 ------------------~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s 550 (667)
T TIGR00348 489 ------------------LFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMT 550 (667)
T ss_pred ------------------hcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEec
Confidence 11111122222111 11 1223589999999998887777776443 34566777
Q ss_pred cCCCHH---------------------HHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHH
Q 000496 656 GKVGGA---------------------ERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQA 714 (1462)
Q Consensus 656 Gst~~~---------------------eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QA 714 (1462)
|+.... ....++++|.++ +.+-+|+++....+|+|.+.++++++.-|--+ +..+|+
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~--~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQa 627 (667)
T TIGR00348 551 GKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE--ENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQA 627 (667)
T ss_pred CCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC--CCceEEEEEcccccccCCCccceEEEeccccc-cHHHHH
Confidence 764432 234789999764 34457888999999999999999999988765 568999
Q ss_pred Hhhhhcc-CC-CCcEEEEEEec
Q 000496 715 MARAHRL-GQ-TNKVMIFRLIT 734 (1462)
Q Consensus 715 igRahRi-GQ-~k~V~VyrLvt 734 (1462)
+||+.|+ +. +....|+.++.
T Consensus 628 i~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 628 IARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred HHHhccccCCCCCCEEEEECcC
Confidence 9999995 43 34567777753
No 60
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.74 E-value=2.6e-16 Score=198.60 Aligned_cols=117 Identities=17% Similarity=0.174 Sum_probs=101.1
Q ss_pred hchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeecc
Q 000496 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1462)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTr 685 (1462)
...|+..+.+.+..+...|..|||||......+.|...|...|+++..++|.....+|..+...|+ .+ .++++|.
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~---~g--~VlIATd 480 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQ---KG--AVTVATS 480 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCC---CC--eEEEEcc
Confidence 467999999999998889999999999999999999999999999999999998877765555443 23 4799999
Q ss_pred ccccccCcc---------cCCEEEEecCCCChhhHHHHHhhhhccCCCCcEE
Q 000496 686 AGGLGINLA---------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1462)
Q Consensus 686 agg~GINL~---------~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~ 728 (1462)
.+|.|+++. ..++||.|+++-+. .+.|+.||++|.|..-.+.
T Consensus 481 mAgRGtDI~l~~~v~~~GGL~vIit~~~ps~r-id~qr~GRtGRqG~~G~s~ 531 (762)
T TIGR03714 481 MAGRGTDIKLGKGVAELGGLAVIGTERMENSR-VDLQLRGRSGRQGDPGSSQ 531 (762)
T ss_pred ccccccCCCCCccccccCCeEEEEecCCCCcH-HHHHhhhcccCCCCceeEE
Confidence 999999999 78999999999665 4599999999999876544
No 61
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.73 E-value=1.9e-16 Score=201.62 Aligned_cols=107 Identities=23% Similarity=0.411 Sum_probs=88.7
Q ss_pred HHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHH-----HHHHHHhc----cC----CCCceEEeecccc
Q 000496 621 KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ-----IRIDRFNA----KN----SSRFCFLLSTRAG 687 (1462)
Q Consensus 621 ~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq-----~~Id~Fn~----~~----s~~fvfLlSTrag 687 (1462)
...+.++|||++.+..++.|...|...++ ..++|.+++.+|. .++++|.. .. .....+||+|.++
T Consensus 269 ~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVa 346 (844)
T TIGR02621 269 KDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAG 346 (844)
T ss_pred hhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchh
Confidence 45678999999999999999999998887 8999999999999 78899975 21 1124589999999
Q ss_pred ccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCc--EEEEEE
Q 000496 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNK--VMIFRL 732 (1462)
Q Consensus 688 g~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~--V~VyrL 732 (1462)
+.|||+.. ++||++..+ +..++||+||++|.|.... +.|+.+
T Consensus 347 erGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 347 EVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 99999975 999987766 4799999999999998643 444433
No 62
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2.6e-16 Score=171.81 Aligned_cols=311 Identities=19% Similarity=0.259 Sum_probs=214.9
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEecCCCchHHH-HHHHHHHHHhCCC-CcEEEEEcc-hhHHHHHHHHHHHCCCCe--EE
Q 000496 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERI-SPHLVVAPL-STLRNWEREFATWAPQMN--VV 362 (1462)
Q Consensus 288 pyQlegvnwL~~~~~~~~~~ILADemGLGKTiq-aIa~l~~L~~~~~-~p~LIVvP~-sll~qW~~E~~k~~P~l~--vv 362 (1462)
..|..++--+ .+|+++|.....|+|||.+ +|+++..+.-... ..+||+.|. .+-.|-..-+......++ +.
T Consensus 52 ~IQqrAi~~I----lkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~h 127 (400)
T KOG0328|consen 52 AIQQRAIPQI----LKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCH 127 (400)
T ss_pred HHHhhhhhhh----hcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEE
Confidence 3566666555 6899999999999999987 5777766543322 379999998 444566666666654444 45
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh--hhcccCCCcceeEeccccccc
Q 000496 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL--DSASLKPIKWQCMIVDEGHRL 440 (1462)
Q Consensus 363 vy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~--d~~~L~~i~w~~VIVDEAHrl 440 (1462)
...|.+.--+.|+..+ ...+|+.-|...+.. ....|..-...++|+|||..+
T Consensus 128 acigg~n~gedikkld--------------------------~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDem 181 (400)
T KOG0328|consen 128 ACIGGKNLGEDIKKLD--------------------------YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEM 181 (400)
T ss_pred EEecCCccchhhhhhc--------------------------ccceEeeCCCchHHHHHHhccccccceeEEEeccHHHH
Confidence 5566665444443321 345788878776644 244566667789999999998
Q ss_pred CC--cchHHHHHHHhcc-ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhhh
Q 000496 441 KN--KDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1462)
Q Consensus 441 KN--~~Sk~~~~l~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~p~~L 517 (1462)
.| ...+++...+.++ ....+++|||- ++|+..+.++..++..
T Consensus 182 L~kgfk~Qiydiyr~lp~~~Qvv~~SATl----p~eilemt~kfmtdpv------------------------------- 226 (400)
T KOG0328|consen 182 LNKGFKEQIYDIYRYLPPGAQVVLVSATL----PHEILEMTEKFMTDPV------------------------------- 226 (400)
T ss_pred HHhhHHHHHHHHHHhCCCCceEEEEeccC----cHHHHHHHHHhcCCce-------------------------------
Confidence 65 4567888888887 55678899994 3444444333333321
Q ss_pred hhhHhhHhhcCCCceeEEEeecCCHHH-HHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcccc
Q 000496 518 RRVKKDVMKELPPKKELILRVELSSKQ-KEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDT 596 (1462)
Q Consensus 518 RR~K~dV~~~LPpk~e~iv~v~ls~~Q-k~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~~~ 596 (1462)
...+-+=+++-+- +.+|-++-.
T Consensus 227 --------------rilvkrdeltlEgIKqf~v~ve~------------------------------------------- 249 (400)
T KOG0328|consen 227 --------------RILVKRDELTLEGIKQFFVAVEK------------------------------------------- 249 (400)
T ss_pred --------------eEEEecCCCchhhhhhheeeech-------------------------------------------
Confidence 1111111222211 111110000
Q ss_pred hHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCC
Q 000496 597 NESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSS 676 (1462)
Q Consensus 597 ~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~ 676 (1462)
..=|+..|..|-..|- =...+|||+..+..|+|.+.++...+.+..++|.+..++|.+++.+|....+.
T Consensus 250 ---------EewKfdtLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~Sr 318 (400)
T KOG0328|consen 250 ---------EEWKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSR 318 (400)
T ss_pred ---------hhhhHhHHHHHhhhhe--hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCce
Confidence 0013333334333331 23689999999999999999999999999999999999999999999887765
Q ss_pred CceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCC
Q 000496 677 RFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1462)
Q Consensus 677 ~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1462)
+|++|.+-+.||+++.++.||.||.|-|+..|+.|+||.+|.|.+-- +..|+...
T Consensus 319 ---vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGv--ainFVk~~ 373 (400)
T KOG0328|consen 319 ---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGV--AINFVKSD 373 (400)
T ss_pred ---EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcce--EEEEecHH
Confidence 89999999999999999999999999999999999999999997742 33566544
No 63
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.72 E-value=1.1e-15 Score=193.80 Aligned_cols=326 Identities=21% Similarity=0.212 Sum_probs=215.6
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHH-HHHHHHHhCC-C----C-cEEEEEcchhH-HHHHHHHHHH
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGER-I----S-PHLVVAPLSTL-RNWEREFATW 355 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~L~~~~-~----~-p~LIVvP~sll-~qW~~E~~k~ 355 (1462)
.+++|.|..++.-+ ..|.|+++...||+|||..|+ ..+..|...+ . + -+|-|.|+..| ..-.+.+..|
T Consensus 21 ~~~t~~Q~~a~~~i----~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEI----HSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHH----hCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 46899999998766 799999999999999999974 5566666652 1 2 57999997555 4455666655
Q ss_pred CC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh------hcccCCC
Q 000496 356 AP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD------SASLKPI 427 (1462)
Q Consensus 356 ~P--~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d------~~~L~~i 427 (1462)
.- ++.+-+-+|+...... .+.....+||+|||.|++... ...|..+
T Consensus 97 ~~~~G~~v~vRhGDT~~~er--------------------------~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~v 150 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEK--------------------------QKMLKNPPHILITTPESLAILLNSPKFRELLRDV 150 (814)
T ss_pred HHHcCCccceecCCCChHHh--------------------------hhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCC
Confidence 42 4556566665433211 112235789999999998543 3445555
Q ss_pred cceeEecccccccCCc--chHHHHHHHhc---c-ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhh
Q 000496 428 KWQCMIVDEGHRLKNK--DSKLFSSLKQY---S-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ 501 (1462)
Q Consensus 428 ~w~~VIVDEAHrlKN~--~Sk~~~~l~~l---~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~ 501 (1462)
+ +|||||.|.+.+. .++++-.|..+ . .-.|++||||- .++++ ...||.+..-
T Consensus 151 r--~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV--~~~~~---varfL~g~~~--------------- 208 (814)
T COG1201 151 R--YVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATV--GPPEE---VAKFLVGFGD--------------- 208 (814)
T ss_pred c--EEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhcc--CCHHH---HHHHhcCCCC---------------
Confidence 5 5999999999864 34555555444 3 24689999994 23333 3334433210
Q ss_pred HHHHHHHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhC
Q 000496 502 EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (1462)
Q Consensus 502 ~~~i~~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~ 581 (1462)
+. .-|......+.++.|.++--.. .
T Consensus 209 ------------~~------~Iv~~~~~k~~~i~v~~p~~~~--~----------------------------------- 233 (814)
T COG1201 209 ------------PC------EIVDVSAAKKLEIKVISPVEDL--I----------------------------------- 233 (814)
T ss_pred ------------ce------EEEEcccCCcceEEEEecCCcc--c-----------------------------------
Confidence 00 0000001111111111110000 0
Q ss_pred CcccccCCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcC-CeEEEEecCCCH
Q 000496 582 HPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK-WQYERIDGKVGG 660 (1462)
Q Consensus 582 hP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~g-i~~~rIdGst~~ 660 (1462)
.. ..-...+.+.+..+.++...+|||++...+.+.|...|...+ ..+..-+||.+.
T Consensus 234 -------------~~----------~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSr 290 (814)
T COG1201 234 -------------YD----------EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSR 290 (814)
T ss_pred -------------cc----------cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccH
Confidence 00 001122334455555666789999999999999999998877 899999999999
Q ss_pred HHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhh-hccCCCCcEEEEEEecCCCHH
Q 000496 661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARA-HRLGQTNKVMIFRLITRGSIE 739 (1462)
Q Consensus 661 ~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRa-hRiGQ~k~V~VyrLvt~~TiE 739 (1462)
+.|..+-++|.++. ...+++|..+.+|||.-..|.||.|.+|-.-...+||+||+ ||+|....- ++++.+ .+
T Consensus 291 e~R~~vE~~lk~G~---lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg---~ii~~~-r~ 363 (814)
T COG1201 291 ELRLEVEERLKEGE---LKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKG---IIIAED-RD 363 (814)
T ss_pred HHHHHHHHHHhcCC---ceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccE---EEEecC-HH
Confidence 99999999997755 45799999999999999999999999999999999999999 677765433 344444 44
Q ss_pred HHHHHHH
Q 000496 740 ERMMQMT 746 (1462)
Q Consensus 740 E~I~e~~ 746 (1462)
+.+--.+
T Consensus 364 dllE~~v 370 (814)
T COG1201 364 DLLECLV 370 (814)
T ss_pred HHHHHHH
Confidence 4443333
No 64
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=2.2e-16 Score=183.91 Aligned_cols=356 Identities=19% Similarity=0.257 Sum_probs=211.6
Q ss_pred CCCHHHHHHHHHHHHhhc-----cCCcEEEEecCCCchHHH-HHHHHHHHHhCCCC--cEEEEEcc-hhHHHHHHHHHHH
Q 000496 285 SLHPYQLEGLNFLRFSWS-----KQTHVILADEMGLGKTIQ-SIAFLASLFGERIS--PHLVVAPL-STLRNWEREFATW 355 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~-----~~~~~ILADemGLGKTiq-aIa~l~~L~~~~~~--p~LIVvP~-sll~qW~~E~~k~ 355 (1462)
.++|-|...+-|+..-.. ..+...++..+|+|||+. +|-++..|...... +.|||+|. .+..|-.++|.+|
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 588999999999866544 356678999999999998 56666666655443 88999997 5667899999999
Q ss_pred CCC--CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCC---cce
Q 000496 356 APQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI---KWQ 430 (1462)
Q Consensus 356 ~P~--l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i---~w~ 430 (1462)
++. +-|....|...-+...++..- .......||+|+|...+......-+.| +-.
T Consensus 239 ~~~tgL~V~~~sgq~sl~~E~~qL~~---------------------~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~Lr 297 (620)
T KOG0350|consen 239 NSGTGLAVCSLSGQNSLEDEARQLAS---------------------DPPECRIDILVATPGRLVDHLNNTKSFDLKHLR 297 (620)
T ss_pred ccCCceEEEecccccchHHHHHHHhc---------------------CCCccccceEEcCchHHHHhccCCCCcchhhce
Confidence 976 445555665544443333210 111236799999999997665543333 456
Q ss_pred eEecccccccCCcch--HHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000496 431 CMIVDEGHRLKNKDS--KLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1462)
Q Consensus 431 ~VIVDEAHrlKN~~S--k~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L 508 (1462)
++|||||.||.+..- .+...+..+....++.+ ...++.+..-..|..+... ...+
T Consensus 298 fLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~--------~~nii~~~~~~~pt~~~e~---------------~t~~ 354 (620)
T KOG0350|consen 298 FLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVAC--------LDNIIRQRQAPQPTVLSEL---------------LTKL 354 (620)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHhCCchhhcC--------hhhhhhhcccCCchhhHHH---------------Hhhc
Confidence 899999999865332 12222222222111111 1111111111111110000 0000
Q ss_pred HHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000496 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1462)
Q Consensus 509 ~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~ 588 (1462)
..+.|.++.-...+.+.+.|.+ +..| -..||.++-.
T Consensus 355 -~~~~~~l~kL~~satLsqdP~K-----------------------------------------l~~l--~l~~Prl~~v 390 (620)
T KOG0350|consen 355 -GKLYPPLWKLVFSATLSQDPSK-----------------------------------------LKDL--TLHIPRLFHV 390 (620)
T ss_pred -CCcCchhHhhhcchhhhcChHH-----------------------------------------Hhhh--hcCCCceEEe
Confidence 0001111111111111111100 0011 1234433322
Q ss_pred CCCCc--cc-chHHHHHHhhhch--HHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHH----hcCCeEEEEecCCC
Q 000496 589 VEPDI--ED-TNESFKQLLESSG--KLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKWQYERIDGKVG 659 (1462)
Q Consensus 589 ~e~~~--~~-~~~~~~~li~~Sg--Kl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~----~~gi~~~rIdGst~ 659 (1462)
..+.. .. +......++-... |-..+..+|.. ....++|+|+........|...|. .-..++-.++|+.+
T Consensus 391 ~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~ 468 (620)
T KOG0350|consen 391 SKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLN 468 (620)
T ss_pred ecccceeeecChhhhhceeecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhh
Confidence 11100 00 0001111122222 33445555554 347899999999888777777775 34566777999999
Q ss_pred HHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecC
Q 000496 660 GAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1462)
Q Consensus 660 ~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~ 735 (1462)
.+.|.+.+.+|+.++-. +|+++.++++||++...+.||.||++-.-..|+.|.||..|-||.-. +|.|+..
T Consensus 469 ~k~r~k~l~~f~~g~i~---vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~--a~tll~~ 539 (620)
T KOG0350|consen 469 GKRRYKMLEKFAKGDIN---VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGY--AITLLDK 539 (620)
T ss_pred HHHHHHHHHHHhcCCce---EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCce--EEEeecc
Confidence 99999999999875544 89999999999999999999999999999999999999999999853 4455544
No 65
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=3.3e-15 Score=190.34 Aligned_cols=131 Identities=20% Similarity=0.217 Sum_probs=109.3
Q ss_pred hhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeec
Q 000496 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1462)
Q Consensus 605 ~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlST 684 (1462)
....|+..|.+++......+.++||||......+.|...|...|+++..++|.+...++..+...+.. + .++++|
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~---g--~VlIAT 483 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK---G--AVTVAT 483 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC---C--eEEEEc
Confidence 34678999999998887889999999999999999999999999999999999888777666655532 2 379999
Q ss_pred cccccccCc---ccCC-----EEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCCCHHHHHHHH
Q 000496 685 RAGGLGINL---ATAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 745 (1462)
Q Consensus 685 ragg~GINL---~~Ad-----~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~ 745 (1462)
..+|.|+|+ +.+. +||.+|.+-|+..+.|+.||++|.|..-.+..| + |.|+.++.+
T Consensus 484 dmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~--i---s~eD~l~~~ 547 (790)
T PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFF--I---SLEDDLLKR 547 (790)
T ss_pred cchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEE--E---cchHHHHHh
Confidence 999999999 4777 999999999999999999999999988644322 2 345555543
No 66
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=3.4e-15 Score=173.22 Aligned_cols=313 Identities=18% Similarity=0.288 Sum_probs=215.0
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHH-hC-C---CC--cEEEEEcchhH----HHHHHHH
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GE-R---IS--PHLVVAPLSTL----RNWEREF 352 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~-~~-~---~~--p~LIVvP~sll----~qW~~E~ 352 (1462)
..+.|-|..++-.+ .++..+++-..+|+|||+.-+.-+..+. .. . ++ -.|||+|+--| .+-...|
T Consensus 27 ~~mTpVQa~tIPll----l~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLL----LKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHH----hcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 46889999999877 7889999999999999987655444443 22 1 12 45999997433 3344556
Q ss_pred HHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----hcccCCCc
Q 000496 353 ATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIK 428 (1462)
Q Consensus 353 ~k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d----~~~L~~i~ 428 (1462)
..+.|++++.++.|+....+.+..+. ....+|+|.|...+... ...+.--.
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~Di~~fk-------------------------ee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEEDIKTFK-------------------------EEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred HHhhhccceEEEecCccHHHHHHHHH-------------------------HhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 66678999999999977666554431 13567999999876443 33344445
Q ss_pred ceeEecccccccCC--cchHHHHHHHhccccceEe-eccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHH
Q 000496 429 WQCMIVDEGHRLKN--KDSKLFSSLKQYSTRHRVL-LTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (1462)
Q Consensus 429 w~~VIVDEAHrlKN--~~Sk~~~~l~~l~~~~rLL-LTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i 505 (1462)
..++|+|||.|+-. ....+...|..++.++|-+ .|||- + ..+
T Consensus 158 Le~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq--~---------------------------------~~v 202 (567)
T KOG0345|consen 158 LEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQ--T---------------------------------QEV 202 (567)
T ss_pred cceEEecchHhHhcccHHHHHHHHHHhcccccccccccchh--h---------------------------------HHH
Confidence 67999999999964 3445666677777777754 46662 0 011
Q ss_pred HHHHHhhchhhhhhhHhhHhhcCCCceeEEEeec-C--CHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCC
Q 000496 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVE-L--SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCH 582 (1462)
Q Consensus 506 ~~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~-l--s~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~h 582 (1462)
..|.. .-||- .....|... + +|. ++.+
T Consensus 203 ~dL~r----aGLRN-----------pv~V~V~~k~~~~tPS------------------------~L~~----------- 232 (567)
T KOG0345|consen 203 EDLAR----AGLRN-----------PVRVSVKEKSKSATPS------------------------SLAL----------- 232 (567)
T ss_pred HHHHH----hhccC-----------ceeeeecccccccCch------------------------hhcc-----------
Confidence 11100 01110 000011000 0 000 0000
Q ss_pred cccccCCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHh--cCCeEEEEecCCCH
Q 000496 583 PYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGG 660 (1462)
Q Consensus 583 P~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~--~gi~~~rIdGst~~ 660 (1462)
....+.+.-|+..|..+|.. ...+|+|||...-...++....|.. .+.+++.|+|.++.
T Consensus 233 -----------------~Y~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q 293 (567)
T KOG0345|consen 233 -----------------EYLVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQ 293 (567)
T ss_pred -----------------eeeEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcc
Confidence 00112344577777777776 3467999998887777777666643 57899999999999
Q ss_pred HHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEE
Q 000496 661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRL 732 (1462)
Q Consensus 661 ~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrL 732 (1462)
..|..++..|.+..++ +|++|.+++.|||++..|.||-||||-+|..+.+|.||..|.|..-...||-+
T Consensus 294 ~~R~k~~~~F~~~~~~---vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~ 362 (567)
T KOG0345|consen 294 KARAKVLEAFRKLSNG---VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLN 362 (567)
T ss_pred hhHHHHHHHHHhccCc---eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEec
Confidence 9999999999874444 79999999999999999999999999999999999999999998877666544
No 67
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.69 E-value=2.1e-16 Score=198.27 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=106.5
Q ss_pred hchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeecc
Q 000496 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1462)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTr 685 (1462)
...|+..+.+.+..+.+.|..|||||..+...+.|..+|...|+++..++|. ..+|+..|..|.. ....++|+|.
T Consensus 387 ~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag---~~g~VtIATn 461 (745)
T TIGR00963 387 EEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAG---RKGAVTIATN 461 (745)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcC---CCceEEEEec
Confidence 3468888888888889999999999999999999999999999999999998 6789999999854 3335899999
Q ss_pred ccccccCccc-------CCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEE
Q 000496 686 AGGLGINLAT-------ADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1462)
Q Consensus 686 agg~GINL~~-------Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~Vy 730 (1462)
.+|+|+|+.. .-+||.++.+-|+..+.|+.||++|.|..-....|
T Consensus 462 mAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 462 MAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 513 (745)
T ss_pred cccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE
Confidence 9999999987 56999999999999999999999999988655443
No 68
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.68 E-value=1.5e-15 Score=187.47 Aligned_cols=354 Identities=17% Similarity=0.205 Sum_probs=218.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCC-cEEEEecCCCchHHHHHHHHHHHHhCC-CCcEEEEEcc-hhHHHHHHHHHHHCCC
Q 000496 282 SGGSLHPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPL-STLRNWEREFATWAPQ 358 (1462)
Q Consensus 282 ~g~~LrpyQlegvnwL~~~~~~~~-~~ILADemGLGKTiqaIa~l~~L~~~~-~~p~LIVvP~-sll~qW~~E~~k~~P~ 358 (1462)
....+|+||..+++.+...+.+++ .++|++.+|+|||.+||+++..|.+.+ .+++|.+|-. +++.|-..+|..+.|+
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCC
Confidence 346799999999999999988866 488999999999999999999998764 5699999995 8888989999999998
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcc-------cCCCccee
Q 000496 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-------LKPIKWQC 431 (1462)
Q Consensus 359 l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~-------L~~i~w~~ 431 (1462)
...+.+...... ...+.|.|.||.++...... +..-.|++
T Consensus 242 ~~~~n~i~~~~~---------------------------------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDl 288 (875)
T COG4096 242 GTKMNKIEDKKG---------------------------------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDL 288 (875)
T ss_pred ccceeeeecccC---------------------------------CcceeEEEeehHHHHhhhhccccccccCCCCceeE
Confidence 776655432211 12578999999999764322 33336999
Q ss_pred EecccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHh
Q 000496 432 MIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1462)
Q Consensus 432 VIVDEAHrlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~l 511 (1462)
||||||||- ..++ ++.+..+-...+++|||||-..--..-|.+++ +.
T Consensus 289 IvIDEaHRg--i~~~-~~~I~dYFdA~~~gLTATP~~~~d~~T~~~F~-----------------g~------------- 335 (875)
T COG4096 289 IVIDEAHRG--IYSE-WSSILDYFDAATQGLTATPKETIDRSTYGFFN-----------------GE------------- 335 (875)
T ss_pred EEechhhhh--HHhh-hHHHHHHHHHHHHhhccCcccccccccccccC-----------------CC-------------
Confidence 999999983 2222 23444444556777899994421111111111 00
Q ss_pred hchhhhhhhHhhHhh-cCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCC
Q 000496 512 LAPHLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1462)
Q Consensus 512 L~p~~LRR~K~dV~~-~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e 590 (1462)
|....-.+..|.. .|-|+....+.+...- +--.|...-++ ..+. .+. +..
T Consensus 336 --Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~-~G~~~~~~ser--ek~~----------------g~~------i~~-- 386 (875)
T COG4096 336 --PTYAYSLEEAVEDGFLVPYKVIRIDTDFDL-DGWKPDAGSER--EKLQ----------------GEA------IDE-- 386 (875)
T ss_pred --cceeecHHHHhhccccCCCCceEEeeeccc-cCcCcCccchh--hhhh----------------ccc------cCc--
Confidence 0000011111221 1222222222222110 00001110000 0000 000 000
Q ss_pred CCcccchHHHHHHhhhchHHHHHHHHHHHHHHc---C---CeEEEEecchhhHHHHHHHHHhc-----CCeEEEEecCCC
Q 000496 591 PDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQ---G---HRVLIYSQFQHMLDLLEDYLTFK-----KWQYERIDGKVG 659 (1462)
Q Consensus 591 ~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~---g---~KVLIFSq~~~~ldiLed~L~~~-----gi~~~rIdGst~ 659 (1462)
++.......+...+........+.+.|.....+ | .|.||||....+++.|...|... |-=+..|+|...
T Consensus 387 dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~ 466 (875)
T COG4096 387 DDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE 466 (875)
T ss_pred ccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch
Confidence 000000000011111122334455555555444 3 49999999999999999998653 233567888764
Q ss_pred HHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhcc-------CCCC-cEEEEE
Q 000496 660 GAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL-------GQTN-KVMIFR 731 (1462)
Q Consensus 660 ~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRi-------GQ~k-~V~Vyr 731 (1462)
+-+..|+.|-. ....-.+.+|...+..|||.+.+-.++|+-.--+-..+.|.+||+-|+ ||.| ...||.
T Consensus 467 --~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifD 543 (875)
T COG4096 467 --QAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFD 543 (875)
T ss_pred --hhHHHHHHHHh-cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEE
Confidence 45677999976 333445789999999999999999999999999999999999999996 3444 466777
Q ss_pred Ee
Q 000496 732 LI 733 (1462)
Q Consensus 732 Lv 733 (1462)
++
T Consensus 544 f~ 545 (875)
T COG4096 544 FV 545 (875)
T ss_pred hh
Confidence 65
No 69
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=2.6e-15 Score=187.77 Aligned_cols=118 Identities=17% Similarity=0.187 Sum_probs=100.5
Q ss_pred hchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeecc
Q 000496 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1462)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTr 685 (1462)
...|+..|.+++..+...+..||||+......+.|...|...|+++..|+|... +|+..+..|.... + .++|+|.
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~-g--~VlVATd 529 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQR-G--RITVATN 529 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCC-C--cEEEEcc
Confidence 456899999999988878899999999999999999999999999999999854 5566666664322 2 3899999
Q ss_pred ccccccCcc---cCC-----EEEEecCCCChhhHHHHHhhhhccCCCCcEE
Q 000496 686 AGGLGINLA---TAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1462)
Q Consensus 686 agg~GINL~---~Ad-----~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~ 728 (1462)
.+|.|+|+. .+. +||.||.+-|...+.|++||++|.|..-.+.
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~ 580 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYE 580 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEE
Confidence 999999998 444 9999999999999999999999999775443
No 70
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.68 E-value=9.3e-15 Score=185.38 Aligned_cols=324 Identities=16% Similarity=0.206 Sum_probs=195.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHH----------HHHH--h-C-CCCcEEEEEcc-hhH
Q 000496 281 LSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL----------ASLF--G-E-RISPHLVVAPL-STL 345 (1462)
Q Consensus 281 ~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l----------~~L~--~-~-~~~p~LIVvP~-sll 345 (1462)
+....|++.|...-.-+...+..++..|+..++|+|||.|.=-++ ..+. . . ..++++|++|. .+.
T Consensus 156 ~~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa 235 (675)
T PHA02653 156 FSKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALV 235 (675)
T ss_pred cccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHH
Confidence 334678888888877778888999999999999999998742222 1111 1 1 23489999997 556
Q ss_pred HHHHHHHHHHC-----CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh
Q 000496 346 RNWEREFATWA-----PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD 420 (1462)
Q Consensus 346 ~qW~~E~~k~~-----P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d 420 (1462)
.|...++.... +...+.+..|+..... ... .....+++|.|.....
T Consensus 236 ~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~--~~t-------------------------~~k~~~Ilv~T~~L~l-- 286 (675)
T PHA02653 236 RLHSITLLKSLGFDEIDGSPISLKYGSIPDEL--INT-------------------------NPKPYGLVFSTHKLTL-- 286 (675)
T ss_pred HHHHHHHHHHhCccccCCceEEEEECCcchHH--hhc-------------------------ccCCCCEEEEeCcccc--
Confidence 67777776532 3445556666554210 000 0114578888754211
Q ss_pred hcccCCCcceeEecccccccCCcchHHHHHHHhccc--cceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhh
Q 000496 421 SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYST--RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD 498 (1462)
Q Consensus 421 ~~~L~~i~w~~VIVDEAHrlKN~~Sk~~~~l~~l~~--~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~ 498 (1462)
..| -...+|||||||..-.....+...++.... ...+++|||.-. ....+ ..|+..
T Consensus 287 -~~L--~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ILmSATl~~-dv~~l---~~~~~~--------------- 344 (675)
T PHA02653 287 -NKL--FDYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRSLFLMTATLED-DRDRI---KEFFPN--------------- 344 (675)
T ss_pred -ccc--ccCCEEEccccccCccchhHHHHHHHHhhhhcCEEEEEccCCcH-hHHHH---HHHhcC---------------
Confidence 122 246789999999975544444444443322 257999999611 12111 122110
Q ss_pred hhhHHHHHHHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 000496 499 INQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRK 578 (1462)
Q Consensus 499 ~~~~~~i~~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk 578 (1462)
|..+. .. ...+.|.....+.....+.++..|-.
T Consensus 345 ---------------p~~I~-I~---grt~~pV~~~yi~~~~~~~~~~~y~~---------------------------- 377 (675)
T PHA02653 345 ---------------PAFVH-IP---GGTLFPISEVYVKNKYNPKNKRAYIE---------------------------- 377 (675)
T ss_pred ---------------CcEEE-eC---CCcCCCeEEEEeecCcccccchhhhH----------------------------
Confidence 00110 00 00112222222211111111111100
Q ss_pred HhCCcccccCCCCCcccchHHHHHHhhhchHHHHHHHHHHHH-HHcCCeEEEEecchhhHHHHHHHHHhc--CCeEEEEe
Q 000496 579 LCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKL-KEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERID 655 (1462)
Q Consensus 579 ~c~hP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l-~~~g~KVLIFSq~~~~ldiLed~L~~~--gi~~~rId 655 (1462)
..|..++ ..+..+ ...+.++|||+......+.+...|... ++.+..++
T Consensus 378 ----------------------------~~k~~~l-~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LH 428 (675)
T PHA02653 378 ----------------------------EEKKNIV-TALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIH 428 (675)
T ss_pred ----------------------------HHHHHHH-HHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEecc
Confidence 0011111 112111 124568999999999999999999876 79999999
Q ss_pred cCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEec----CC--------CChhhHHHHHhhhhccCC
Q 000496 656 GKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYD----SD--------WNPHADLQAMARAHRLGQ 723 (1462)
Q Consensus 656 Gst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D----~d--------WNP~~d~QAigRahRiGQ 723 (1462)
|+++.. ++++++|.. ++...+|++|..++.||+++.+++||-++ |. .+...+.||.||++|.
T Consensus 429 G~Lsq~--eq~l~~ff~--~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-- 502 (675)
T PHA02653 429 GKVPNI--DEILEKVYS--SKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-- 502 (675)
T ss_pred CCcCHH--HHHHHHHhc--cCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC--
Confidence 999864 567778742 24456899999999999999999999987 21 2666788999999887
Q ss_pred CCcEEEEEEecCCCH
Q 000496 724 TNKVMIFRLITRGSI 738 (1462)
Q Consensus 724 ~k~V~VyrLvt~~Ti 738 (1462)
++-.+|+|+++...
T Consensus 503 -~~G~c~rLyt~~~~ 516 (675)
T PHA02653 503 -SPGTYVYFYDLDLL 516 (675)
T ss_pred -CCCeEEEEECHHHh
Confidence 46788899988754
No 71
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.67 E-value=6.2e-15 Score=181.12 Aligned_cols=305 Identities=19% Similarity=0.214 Sum_probs=211.9
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCCCCeEE
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vv 362 (1462)
...||-|.+++..+ ..++++|.-..||-||++.. .|-.+.. .|.+|||.|+ |++.+-.+.+.... +.+.
T Consensus 16 ~~FR~gQ~evI~~~----l~g~d~lvvmPTGgGKSlCy--QiPAll~--~G~TLVVSPLiSLM~DQV~~l~~~G--i~A~ 85 (590)
T COG0514 16 ASFRPGQQEIIDAL----LSGKDTLVVMPTGGGKSLCY--QIPALLL--EGLTLVVSPLISLMKDQVDQLEAAG--IRAA 85 (590)
T ss_pred cccCCCHHHHHHHH----HcCCcEEEEccCCCCcchHh--hhHHHhc--CCCEEEECchHHHHHHHHHHHHHcC--ceee
Confidence 35888999998877 67799999999999999863 2223322 3599999997 89988888888754 4554
Q ss_pred EEEcC--hhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hcccCCCcceeEeccccc
Q 000496 363 MYVGT--SQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGH 438 (1462)
Q Consensus 363 vy~G~--~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d--~~~L~~i~w~~VIVDEAH 438 (1462)
.+.++ .+++..+... ......+++..+.|.+... ...|...+..+++|||||
T Consensus 86 ~lnS~l~~~e~~~v~~~------------------------l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAH 141 (590)
T COG0514 86 YLNSTLSREERQQVLNQ------------------------LKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAH 141 (590)
T ss_pred hhhcccCHHHHHHHHHH------------------------HhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHH
Confidence 44443 2222222211 1124578999999998765 445667888999999999
Q ss_pred ccCCc-------chHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHh
Q 000496 439 RLKNK-------DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1462)
Q Consensus 439 rlKN~-------~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~l 511 (1462)
.+-.. ...+......+...-++.||||--.--..|+...|+.-.+..|.+.
T Consensus 142 CiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s---------------------- 199 (590)
T COG0514 142 CISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGS---------------------- 199 (590)
T ss_pred HHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec----------------------
Confidence 98543 3455555556666678999888533333333333332222111100
Q ss_pred hchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000496 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1462)
Q Consensus 512 L~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~ 591 (1462)
+. . -|+....+.
T Consensus 200 --------------------------fd--------------------------R---pNi~~~v~~------------- 211 (590)
T COG0514 200 --------------------------FD--------------------------R---PNLALKVVE------------- 211 (590)
T ss_pred --------------------------CC--------------------------C---chhhhhhhh-------------
Confidence 00 0 000000000
Q ss_pred CcccchHHHHHHhhhch--HHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHH
Q 000496 592 DIEDTNESFKQLLESSG--KLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1462)
Q Consensus 592 ~~~~~~~~~~~li~~Sg--Kl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~ 669 (1462)
..++ ++.+|.+ .....+...||||......+-|..+|...|++...++|+++.++|+..-++
T Consensus 212 -------------~~~~~~q~~fi~~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~ 275 (590)
T COG0514 212 -------------KGEPSDQLAFLAT---VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQA 275 (590)
T ss_pred -------------cccHHHHHHHHHh---hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHH
Confidence 0011 1111221 122334568999999999999999999999999999999999999999999
Q ss_pred HhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEE
Q 000496 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (1462)
Q Consensus 670 Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~Vyr 731 (1462)
|+.++.. ++++|.|.|.|||=+....||+||.|-+...|.|-+|||+|-|....+.+++
T Consensus 276 f~~~~~~---iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~ 334 (590)
T COG0514 276 FLNDEIK---VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLY 334 (590)
T ss_pred HhcCCCc---EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEee
Confidence 9865544 8999999999999999999999999999999999999999999887665543
No 72
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.66 E-value=4e-15 Score=176.89 Aligned_cols=313 Identities=19% Similarity=0.266 Sum_probs=205.2
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHhCCC-----------CcEEEEEcc-hhHHHHHH
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERI-----------SPHLVVAPL-STLRNWER 350 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~L~~~~~-----------~p~LIVvP~-sll~qW~~ 350 (1462)
..+.|+|..++.-+ ..|++.+.+..+|+|||..- |-++.+++..+. ...||++|+ .+..|-..
T Consensus 95 ~~ptpvQk~sip~i----~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~n 170 (482)
T KOG0335|consen 95 TKPTPVQKYSIPII----SGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYN 170 (482)
T ss_pred cCCCcceeecccee----ecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHH
Confidence 34678898887765 78899999999999999874 455566665421 257999998 77889899
Q ss_pred HHHHHC--CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCC
Q 000496 351 EFATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKP 426 (1462)
Q Consensus 351 E~~k~~--P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~ 426 (1462)
|..++. ..+++++.+|..+.+..++.. ...+|++++|...+..-. ..+..
T Consensus 171 ea~k~~~~s~~~~~~~ygg~~~~~q~~~~--------------------------~~gcdIlvaTpGrL~d~~e~g~i~l 224 (482)
T KOG0335|consen 171 EARKFSYLSGMKSVVVYGGTDLGAQLRFI--------------------------KRGCDILVATPGRLKDLIERGKISL 224 (482)
T ss_pred HHHhhcccccceeeeeeCCcchhhhhhhh--------------------------ccCccEEEecCchhhhhhhcceeeh
Confidence 998886 346666666665554433321 247899999998875421 12211
Q ss_pred CcceeEecccccccCCc---chHHHHHHHhc-----cccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhh
Q 000496 427 IKWQCMIVDEGHRLKNK---DSKLFSSLKQY-----STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD 498 (1462)
Q Consensus 427 i~w~~VIVDEAHrlKN~---~Sk~~~~l~~l-----~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~ 498 (1462)
-...++|+|||.++-.. .-.+.+.+... ....-++.|||- +
T Consensus 225 ~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtf--------------------p----------- 273 (482)
T KOG0335|consen 225 DNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATF--------------------P----------- 273 (482)
T ss_pred hhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccC--------------------C-----------
Confidence 22348999999997542 12222332222 123345666652 0
Q ss_pred hhhHHHHHHHH-Hhhch-hhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Q 000496 499 INQEEQISRLH-RMLAP-HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMEL 576 (1462)
Q Consensus 499 ~~~~~~i~~L~-~lL~p-~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~L 576 (1462)
..++++. ..+.. |+. -.-.-|...-......+++|.
T Consensus 274 ----~~iq~l~~~fl~~~yi~-laV~rvg~~~~ni~q~i~~V~------------------------------------- 311 (482)
T KOG0335|consen 274 ----KEIQRLAADFLKDNYIF-LAVGRVGSTSENITQKILFVN------------------------------------- 311 (482)
T ss_pred ----hhhhhhHHHHhhccceE-EEEeeeccccccceeEeeeec-------------------------------------
Confidence 0000000 00000 000 000000011111122222222
Q ss_pred HHHhCCcccccCCCCCcccchHHHHHHhhhchHHHHHHHHHHHHH---H----cCCeEEEEecchhhHHHHHHHHHhcCC
Q 000496 577 RKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK---E----QGHRVLIYSQFQHMLDLLEDYLTFKKW 649 (1462)
Q Consensus 577 Rk~c~hP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~---~----~g~KVLIFSq~~~~ldiLed~L~~~gi 649 (1462)
...|...|.++|.... . .-++++||+.-.++++.|..+|...|+
T Consensus 312 -----------------------------~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~ 362 (482)
T KOG0335|consen 312 -----------------------------EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGY 362 (482)
T ss_pred -----------------------------chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCC
Confidence 1222233333333222 1 125899999999999999999999999
Q ss_pred eEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEE
Q 000496 650 QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1462)
Q Consensus 650 ~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~V 729 (1462)
++.-|+|..++.+|.++++.|...... +|++|..++.|||++.+.+||+||.+-+...|+.|+||.+|.|+.-..+.
T Consensus 363 ~~~sIhg~~tq~er~~al~~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~ats 439 (482)
T KOG0335|consen 363 PAKSIHGDRTQIEREQALNDFRNGKAP---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATS 439 (482)
T ss_pred CceeecchhhhhHHHHHHHHhhcCCcc---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEE
Confidence 999999999999999999999764444 89999999999999999999999999999999999999999999976665
Q ss_pred EE
Q 000496 730 FR 731 (1462)
Q Consensus 730 yr 731 (1462)
|.
T Consensus 440 f~ 441 (482)
T KOG0335|consen 440 FF 441 (482)
T ss_pred Ee
Confidence 54
No 73
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.66 E-value=9e-15 Score=195.95 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=84.1
Q ss_pred cCCeEEEEecchhhHHHHHHHHHhcC---------------------------------CeEEEEecCCCHHHHHHHHHH
Q 000496 623 QGHRVLIYSQFQHMLDLLEDYLTFKK---------------------------------WQYERIDGKVGGAERQIRIDR 669 (1462)
Q Consensus 623 ~g~KVLIFSq~~~~ldiLed~L~~~g---------------------------------i~~~rIdGst~~~eRq~~Id~ 669 (1462)
.+.++|||++.....+.|...|+... +....++|+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 47899999999999999888886431 124567899999999999999
Q ss_pred HhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhcc
Q 000496 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1462)
Q Consensus 670 Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRi 721 (1462)
|.++. ..+|++|.+++.|||+..+|.||.|+++.+...++|++||++|.
T Consensus 323 fK~G~---LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGE---LRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCC---ceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 97643 45899999999999999999999999999999999999999985
No 74
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.64 E-value=3.1e-15 Score=174.82 Aligned_cols=308 Identities=19% Similarity=0.278 Sum_probs=203.0
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHH-HHHHhC----CCC-cEEEEEcc-hhHHHHHHH---HH
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGE----RIS-PHLVVAPL-STLRNWERE---FA 353 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l-~~L~~~----~~~-p~LIVvP~-sll~qW~~E---~~ 353 (1462)
.+|.+-|...+.=+ ..+..++.+.-+|+|||+..+.-+ ..++.. +.+ -+|||||+ .+-.|-..| +.
T Consensus 103 ~~MT~VQ~~ti~pl----l~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll 178 (543)
T KOG0342|consen 103 ETMTPVQQKTIPPL----LEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELL 178 (543)
T ss_pred cchhHHHHhhcCcc----CCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHH
Confidence 35888888877655 677899999999999998643322 223222 122 68999998 444554444 55
Q ss_pred HHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCC---Ccce
Q 000496 354 TWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKP---IKWQ 430 (1462)
Q Consensus 354 k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~---i~w~ 430 (1462)
++.+...+.+..|...-+...... . ...+++|.|...+......-.. -.-.
T Consensus 179 ~~h~~~~v~~viGG~~~~~e~~kl-------------------------~-k~~niliATPGRLlDHlqNt~~f~~r~~k 232 (543)
T KOG0342|consen 179 KYHESITVGIVIGGNNFSVEADKL-------------------------V-KGCNILIATPGRLLDHLQNTSGFLFRNLK 232 (543)
T ss_pred hhCCCcceEEEeCCccchHHHHHh-------------------------h-ccccEEEeCCchHHhHhhcCCcchhhccc
Confidence 566677777777766544322211 1 2678999999988654222111 1236
Q ss_pred eEecccccccCCc--chHHHHHHHhccc-cceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHH
Q 000496 431 CMIVDEGHRLKNK--DSKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1462)
Q Consensus 431 ~VIVDEAHrlKN~--~Sk~~~~l~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~ 507 (1462)
++|+|||.||-.. .-.+-+.+..+.. ...+|.|||- ...+..
T Consensus 233 ~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~-----------------------------------~~kV~~ 277 (543)
T KOG0342|consen 233 CLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQ-----------------------------------PSKVKD 277 (543)
T ss_pred eeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCC-----------------------------------cHHHHH
Confidence 8999999998532 2233344444432 3346677762 001111
Q ss_pred HHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccccc
Q 000496 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (1462)
Q Consensus 508 L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~ 587 (1462)
|... .|+| .|..++
T Consensus 278 l~~~----~L~~--------------------------------------------------------------d~~~v~ 291 (543)
T KOG0342|consen 278 LARG----ALKR--------------------------------------------------------------DPVFVN 291 (543)
T ss_pred HHHH----hhcC--------------------------------------------------------------CceEee
Confidence 1100 0000 000001
Q ss_pred CCCCCcccchHHHHH---HhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHH
Q 000496 588 GVEPDIEDTNESFKQ---LLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ 664 (1462)
Q Consensus 588 ~~e~~~~~~~~~~~~---li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq 664 (1462)
........+.+.+.+ +.....++.+|..+|++...+ .||+||+....+...+.+.|+...+++.-|+|..++..|-
T Consensus 292 ~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT 370 (543)
T KOG0342|consen 292 VDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRT 370 (543)
T ss_pred cCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccc
Confidence 111000001111111 111234467777888876543 8999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCc
Q 000496 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNK 726 (1462)
Q Consensus 665 ~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~ 726 (1462)
....+|.+..++ +|++|.++++|+|.+.+|.||-||++-+|.+|++|+||..|-|-+-.
T Consensus 371 ~~~~~F~kaesg---IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 371 STFFEFCKAESG---ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred hHHHHHhhcccc---eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCce
Confidence 999999988877 89999999999999999999999999999999999999999776643
No 75
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.64 E-value=3.5e-14 Score=173.93 Aligned_cols=305 Identities=17% Similarity=0.277 Sum_probs=203.5
Q ss_pred CCCCHHHHHHHHHHHHhhccC--CcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhH-HHHHHHHHHHCC--C
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAP--Q 358 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~--~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll-~qW~~E~~k~~P--~ 358 (1462)
.+|...|..+++=+..-.... -+-+|.-++|+|||+.|+..+......+ ....+.||+.+| .|-.+.|.+|++ +
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G-~Q~ALMAPTEILA~QH~~~~~~~l~~~~ 339 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG-YQAALMAPTEILAEQHYESLRKWLEPLG 339 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC-CeeEEeccHHHHHHHHHHHHHHHhhhcC
Confidence 578889999998775544443 3458999999999999876666665554 377888999877 567888999997 5
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEeccccc
Q 000496 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1462)
Q Consensus 359 l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEAH 438 (1462)
+.|....|.-.....-...+ ....+..++||-|+..+.....+- +..+||+||=|
T Consensus 340 i~V~lLtG~~kgk~r~~~l~----------------------~l~~G~~~ivVGTHALiQd~V~F~---~LgLVIiDEQH 394 (677)
T COG1200 340 IRVALLTGSLKGKARKEILE----------------------QLASGEIDIVVGTHALIQDKVEFH---NLGLVIIDEQH 394 (677)
T ss_pred CeEEEeecccchhHHHHHHH----------------------HHhCCCCCEEEEcchhhhcceeec---ceeEEEEeccc
Confidence 67777888755433211111 012356789999999886543332 45799999999
Q ss_pred ccCCcchHHHHHHHhc-c-ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhh
Q 000496 439 RLKNKDSKLFSSLKQY-S-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (1462)
Q Consensus 439 rlKN~~Sk~~~~l~~l-~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~p~~ 516 (1462)
|+.- .....|+.- . ..|.|.|||||+.-.+. ...|+++..
T Consensus 395 RFGV---~QR~~L~~KG~~~Ph~LvMTATPIPRTLA--------------------lt~fgDldv--------------- 436 (677)
T COG1200 395 RFGV---HQRLALREKGEQNPHVLVMTATPIPRTLA--------------------LTAFGDLDV--------------- 436 (677)
T ss_pred cccH---HHHHHHHHhCCCCCcEEEEeCCCchHHHH--------------------HHHhccccc---------------
Confidence 9853 333444443 3 57999999999877643 112222211
Q ss_pred hhhhHhhHhhcCCCceeEEEeecCCH-HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCccc
Q 000496 517 LRRVKKDVMKELPPKKELILRVELSS-KQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (1462)
Q Consensus 517 LRR~K~dV~~~LPpk~e~iv~v~ls~-~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~~ 595 (1462)
.+.+.+|+...-+...-+.. .-.++|+.+
T Consensus 437 ------S~IdElP~GRkpI~T~~i~~~~~~~v~e~i-------------------------------------------- 466 (677)
T COG1200 437 ------SIIDELPPGRKPITTVVIPHERRPEVYERI-------------------------------------------- 466 (677)
T ss_pred ------hhhccCCCCCCceEEEEeccccHHHHHHHH--------------------------------------------
Confidence 12357887633332222221 112223222
Q ss_pred chHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhh--------HHHHHHHHHh--cCCeEEEEecCCCHHHHHH
Q 000496 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM--------LDLLEDYLTF--KKWQYERIDGKVGGAERQI 665 (1462)
Q Consensus 596 ~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~--------ldiLed~L~~--~gi~~~rIdGst~~~eRq~ 665 (1462)
.+-..+|+++.+.|.-+.. ...+...|.. .++++..++|.++.+++++
T Consensus 467 ----------------------~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~ 524 (677)
T COG1200 467 ----------------------REEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDA 524 (677)
T ss_pred ----------------------HHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHH
Confidence 1112246666666554432 2223333331 3677999999999999999
Q ss_pred HHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCC-CChhhHHHHHhhhhccCCCCcE
Q 000496 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKV 727 (1462)
Q Consensus 666 ~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~d-WNP~~d~QAigRahRiGQ~k~V 727 (1462)
++.+|+++..+ +|+||.+..+|||++.|..+||++.. +--++.-|-.||++|=+...-|
T Consensus 525 vM~~Fk~~e~~---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC 584 (677)
T COG1200 525 VMEAFKEGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYC 584 (677)
T ss_pred HHHHHHcCCCc---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEE
Confidence 99999875555 89999999999999999999999987 7788899999999995544433
No 76
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.64 E-value=4.7e-14 Score=169.08 Aligned_cols=85 Identities=24% Similarity=0.292 Sum_probs=71.7
Q ss_pred cCCeEEEEecchhhHHHHHHHHHhcC--CeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEE
Q 000496 623 QGHRVLIYSQFQHMLDLLEDYLTFKK--WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1462)
Q Consensus 623 ~g~KVLIFSq~~~~ldiLed~L~~~g--i~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VI 700 (1462)
.+.|+|||++....++.+...|...| +.+..++|.++..+|.++. ...+|++|.+.+.|||+.. +.||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~---------~~~iLVaTdv~~rGiDi~~-~~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM---------QFDILLGTSTVDVGVDFKR-DWLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc---------cCCEEEEecHHhcccCCCC-ceEE
Confidence 57899999999999999999998764 5788999999999887553 3358999999999999985 4666
Q ss_pred EecCCCChhhHHHHHhhhh
Q 000496 701 IYDSDWNPHADLQAMARAH 719 (1462)
Q Consensus 701 i~D~dWNP~~d~QAigRah 719 (1462)
++ +-++..++||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 56 567889999999974
No 77
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.63 E-value=2.4e-15 Score=169.66 Aligned_cols=319 Identities=18% Similarity=0.295 Sum_probs=208.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHH--------hCCCCcE-EEEEcch-hHHHHHHHHH
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLF--------GERISPH-LVVAPLS-TLRNWEREFA 353 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~L~--------~~~~~p~-LIVvP~s-ll~qW~~E~~ 353 (1462)
...|.|++|+--+ ..|+..|--.-+|+|||++. +-++...+ ..+-+|+ |||||.. +..|-..-+.
T Consensus 192 ~PTpIQvQGlPvv----LsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 192 HPTPIQVQGLPVV----LSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred CCCceeecCcceE----eecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 4667899998654 56778787778999999862 22222222 1233565 9999974 4444333333
Q ss_pred HH--------CCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hcc
Q 000496 354 TW--------APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SAS 423 (1462)
Q Consensus 354 k~--------~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d--~~~ 423 (1462)
.+ .|.++.....|.-..+..+... ....|++|.|...+... ...
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v--------------------------~~GvHivVATPGRL~DmL~KK~ 321 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQLDVV--------------------------RRGVHIVVATPGRLMDMLAKKI 321 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHHHHH--------------------------hcCeeEEEcCcchHHHHHHHhh
Confidence 33 3667777777776666544331 23568999998877432 111
Q ss_pred cCCCcceeEecccccccCC--cchHHHHHHHhcccc-ceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh
Q 000496 424 LKPIKWQCMIVDEGHRLKN--KDSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN 500 (1462)
Q Consensus 424 L~~i~w~~VIVDEAHrlKN--~~Sk~~~~l~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~ 500 (1462)
+.---..++.+|||.|+-. ....+...+.-|++. ..||.|||- |.. ...|..
T Consensus 322 ~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATM----------------P~K-------IQ~FAk-- 376 (610)
T KOG0341|consen 322 MSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATM----------------PKK-------IQNFAK-- 376 (610)
T ss_pred ccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccc----------------cHH-------HHHHHH--
Confidence 1111245899999999854 223333334444433 457788873 110 000100
Q ss_pred hHHHHHHHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHh
Q 000496 501 QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLC 580 (1462)
Q Consensus 501 ~~~~i~~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c 580 (1462)
..+++| .+|.|. .....-++++.+
T Consensus 377 --------SALVKP-------------------vtvNVG------------------------RAGAAsldViQe----- 400 (610)
T KOG0341|consen 377 --------SALVKP-------------------VTVNVG------------------------RAGAASLDVIQE----- 400 (610)
T ss_pred --------hhcccc-------------------eEEecc------------------------cccccchhHHHH-----
Confidence 011111 112221 001111222221
Q ss_pred CCcccccCCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCH
Q 000496 581 CHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGG 660 (1462)
Q Consensus 581 ~hP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~ 660 (1462)
-..+..-+|+..|.+.|++ ..-+||||+.-..-.|-|.+||-.+|...+.|+|+-.+
T Consensus 401 --------------------vEyVkqEaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQ 457 (610)
T KOG0341|consen 401 --------------------VEYVKQEAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQ 457 (610)
T ss_pred --------------------HHHHHhhhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHccceeEEeecCcch
Confidence 1234455677777666655 56789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCCCHHH
Q 000496 661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1462)
Q Consensus 661 ~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE 740 (1462)
++|..+|+.|..+..+ +|+.|.+++-|++++...+||.||.+-.-.+|..||||.+|-|.+--.+ .|+.+++-|.
T Consensus 458 edR~~ai~afr~gkKD---VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiAT--TfINK~~~es 532 (610)
T KOG0341|consen 458 EDRHYAIEAFRAGKKD---VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIAT--TFINKNQEES 532 (610)
T ss_pred hHHHHHHHHHhcCCCc---eEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceee--eeecccchHH
Confidence 9999999999886665 8999999999999999999999999999999999999999999775333 4566665544
Q ss_pred HH
Q 000496 741 RM 742 (1462)
Q Consensus 741 ~I 742 (1462)
-+
T Consensus 533 vL 534 (610)
T KOG0341|consen 533 VL 534 (610)
T ss_pred HH
Confidence 44
No 78
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.63 E-value=9.8e-15 Score=170.94 Aligned_cols=334 Identities=16% Similarity=0.235 Sum_probs=207.0
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHh---------CCCC-cEEEEEcc-hhHHHHHHHH
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFG---------ERIS-PHLVVAPL-STLRNWEREF 352 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~L~~---------~~~~-p~LIVvP~-sll~qW~~E~ 352 (1462)
...|.|..++--+ ..+++.|...|+|+|||..- |-++..+.. ..-+ ..+|++|+ -+..|-..|-
T Consensus 267 eptpIqR~aipl~----lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 267 EPTPIQRQAIPLG----LQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred CCchHHHhhccch----hccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 3667888887644 67889999999999999442 222222221 1123 46899998 4556667777
Q ss_pred HHHCC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCc
Q 000496 353 ATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIK 428 (1462)
Q Consensus 353 ~k~~P--~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~ 428 (1462)
.+|+- .+.++...|...--.. .| .-...++++|.|...+..-. ..|-.-.
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq----~f----------------------qls~gceiviatPgrLid~Lenr~lvl~q 396 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQ----GF----------------------QLSMGCEIVIATPGRLIDSLENRYLVLNQ 396 (673)
T ss_pred HHhcccccceEEEEecccchhhh----hh----------------------hhhccceeeecCchHHHHHHHHHHHHhcc
Confidence 77762 3566766665432111 01 01246789999998775422 2233335
Q ss_pred ceeEecccccccCCc--chHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHH
Q 000496 429 WQCMIVDEGHRLKNK--DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQIS 506 (1462)
Q Consensus 429 w~~VIVDEAHrlKN~--~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~ 506 (1462)
..+||+|||.++-.. .-.....|..+ |..|- .| +.+++ +...
T Consensus 397 ctyvvldeadrmiDmgfE~dv~~iL~~m-----------Pssn~-----------k~----~tde~----------~~~~ 440 (673)
T KOG0333|consen 397 CTYVVLDEADRMIDMGFEPDVQKILEQM-----------PSSNA-----------KP----DTDEK----------EGEE 440 (673)
T ss_pred CceEeccchhhhhcccccHHHHHHHHhC-----------Ccccc-----------CC----Cccch----------hhHH
Confidence 678999999987432 22222332222 21111 00 11111 1111
Q ss_pred HHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccc
Q 000496 507 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1462)
Q Consensus 507 ~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~ 586 (1462)
.+.+.+.. .| --.......+.|++.-..+-+.++. .|..+
T Consensus 441 ~~~~~~~~-----~k-------~yrqT~mftatm~p~verlar~ylr----------------------------~pv~v 480 (673)
T KOG0333|consen 441 RVRKNFSS-----SK-------KYRQTVMFTATMPPAVERLARSYLR----------------------------RPVVV 480 (673)
T ss_pred HHHhhccc-----cc-------ceeEEEEEecCCChHHHHHHHHHhh----------------------------CCeEE
Confidence 11111100 00 0011223344555543333322221 22211
Q ss_pred c-CCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Q 000496 587 E-GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1462)
Q Consensus 587 ~-~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~ 665 (1462)
. +.........+..-.++..+.|...|.++|... ....+|||.+.....|.|++.|...||++++++|+-+.++|..
T Consensus 481 tig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~ 558 (673)
T KOG0333|consen 481 TIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQREN 558 (673)
T ss_pred EeccCCCCccchheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHH
Confidence 1 111111111111111344567777777777764 3579999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEE
Q 000496 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1462)
Q Consensus 666 ~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~V 729 (1462)
++..|..+..+ +|++|.++|.||+++.+++||.||..-+...|+++|||.+|-|+.-.+.-
T Consensus 559 aL~~fr~~t~d---IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiS 619 (673)
T KOG0333|consen 559 ALADFREGTGD---ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAIS 619 (673)
T ss_pred HHHHHHhcCCC---EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEE
Confidence 99999886666 89999999999999999999999999999999999999999999875544
No 79
>PRK09401 reverse gyrase; Reviewed
Probab=99.62 E-value=5.1e-14 Score=188.35 Aligned_cols=294 Identities=15% Similarity=0.190 Sum_probs=183.0
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCCCC--
Q 000496 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM-- 359 (1462)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l-- 359 (1462)
|..++++|..++..+ ..+.++++..+||+|||..++.++..+.. ....+|||+|+ .++.||...|..++...
T Consensus 78 G~~pt~iQ~~~i~~i----l~g~dv~i~ApTGsGKT~f~l~~~~~l~~-~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~ 152 (1176)
T PRK09401 78 GSKPWSLQRTWAKRL----LLGESFAIIAPTGVGKTTFGLVMSLYLAK-KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGC 152 (1176)
T ss_pred CCCCcHHHHHHHHHH----HCCCcEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHHHHHhhhcCc
Confidence 457899999887655 57889999999999999754444433332 33489999997 77899999999987543
Q ss_pred eEEEEEcChh----HHHH-HHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEec
Q 000496 360 NVVMYVGTSQ----ARNI-IREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIV 434 (1462)
Q Consensus 360 ~vvvy~G~~~----~R~~-i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIV 434 (1462)
.+.+..|... .+.. .... ....++|+|+|++.+......+....+++|||
T Consensus 153 ~~~~~~g~~~~~~~ek~~~~~~l-------------------------~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVv 207 (1176)
T PRK09401 153 GVKILYYHSSLKKKEKEEFLERL-------------------------KEGDFDILVTTSQFLSKNFDELPKKKFDFVFV 207 (1176)
T ss_pred eEEEEEccCCcchhHHHHHHHHH-------------------------hcCCCCEEEECHHHHHHHHHhccccccCEEEE
Confidence 3433443321 1111 1100 12358999999999987766666667999999
Q ss_pred ccccccCCcch--------------HHHHHHHhcc-------------------------ccceEeeccccccCCHHHHH
Q 000496 435 DEGHRLKNKDS--------------KLFSSLKQYS-------------------------TRHRVLLTGTPLQNNLDELF 475 (1462)
Q Consensus 435 DEAHrlKN~~S--------------k~~~~l~~l~-------------------------~~~rLLLTGTPlqNnl~EL~ 475 (1462)
||||++-...- .+..++..++ ....++.|||.-......
T Consensus 208 DEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~-- 285 (1176)
T PRK09401 208 DDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV-- 285 (1176)
T ss_pred EChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH--
Confidence 99999853111 1111121111 112344444431110000
Q ss_pred HHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHH
Q 000496 476 MLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRN 555 (1462)
Q Consensus 476 sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~ 555 (1462)
.++..++.
T Consensus 286 ----------------------------------------------------------------------~l~~~ll~-- 293 (1176)
T PRK09401 286 ----------------------------------------------------------------------KLFRELLG-- 293 (1176)
T ss_pred ----------------------------------------------------------------------HHhhccce--
Confidence 00000000
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchh
Q 000496 556 YQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQH 635 (1462)
Q Consensus 556 ~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~ 635 (1462)
+. -+..... ++.+ .|-|. ....|...|.+++..+ |..+|||++...
T Consensus 294 ---~~-v~~~~~~-------~rnI-~~~yi-------------------~~~~k~~~L~~ll~~l---~~~~LIFv~t~~ 339 (1176)
T PRK09401 294 ---FE-VGSPVFY-------LRNI-VDSYI-------------------VDEDSVEKLVELVKRL---GDGGLIFVPSDK 339 (1176)
T ss_pred ---EE-ecCcccc-------cCCc-eEEEE-------------------EcccHHHHHHHHHHhc---CCCEEEEEeccc
Confidence 00 0000000 0000 01010 0113555566666544 568999999877
Q ss_pred h---HHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEee----ccccccccCccc-CCEEEEecCCC-
Q 000496 636 M---LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS----TRAGGLGINLAT-ADTVIIYDSDW- 706 (1462)
Q Consensus 636 ~---ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlS----Tragg~GINL~~-Ad~VIi~D~dW- 706 (1462)
. ++.|.++|...|+++..++|++ .+.+++|.++... +|++ |..+++|||++. ..+||+|+.|-
T Consensus 340 ~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~---VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~ 411 (1176)
T PRK09401 340 GKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVD---VLVGVASYYGVLVRGIDLPERIRYAIFYGVPKF 411 (1176)
T ss_pred ChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCC---EEEEecCCCCceeecCCCCcceeEEEEeCCCCE
Confidence 7 9999999999999999999998 2346999765443 6777 689999999998 89999999986
Q ss_pred -----ChhhHHHHHhhhhccC
Q 000496 707 -----NPHADLQAMARAHRLG 722 (1462)
Q Consensus 707 -----NP~~d~QAigRahRiG 722 (1462)
....+..++||..++-
T Consensus 412 ~~~~~~~~~~~~~~~r~~~~~ 432 (1176)
T PRK09401 412 KFSLEEELAPPFLLLRLLSLL 432 (1176)
T ss_pred EEeccccccCHHHHHHHHhhc
Confidence 5667788888887543
No 80
>COG4889 Predicted helicase [General function prediction only]
Probab=99.62 E-value=1.6e-14 Score=175.40 Aligned_cols=383 Identities=17% Similarity=0.203 Sum_probs=203.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHC--CC
Q 000496 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQ 358 (1462)
Q Consensus 282 ~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~--P~ 358 (1462)
...++||||.++++-....+..+.+|=|-+.+|+|||.+++-+...+.. ..+|.+||. ++|.|-.+|...-. +-
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~---~~iL~LvPSIsLLsQTlrew~~~~~l~~ 234 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA---ARILFLVPSISLLSQTLREWTAQKELDF 234 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh---hheEeecchHHHHHHHHHHHhhccCccc
Confidence 3468999999999999888899999999999999999999998888765 479999997 88888666653322 22
Q ss_pred CeEEEEEcChhHHH--HHHHhhhcCCCCchhh-hccccCccccccccccccccEEEecHHHHHhhh--cccCCCcceeEe
Q 000496 359 MNVVMYVGTSQARN--IIREYEFYFPKNPKKV-KKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMI 433 (1462)
Q Consensus 359 l~vvvy~G~~~~R~--~i~~~e~~~~~~~~~~-~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~w~~VI 433 (1462)
..+.++..++-+|. -|..+++-+|...... .... ........+--||++||+.+..-. ....--.|++||
T Consensus 235 ~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~-----~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDlii 309 (1518)
T COG4889 235 RASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSE-----MEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLII 309 (1518)
T ss_pred eeEEEecCccccccccccccccCCCCCcccHHHHHHH-----HHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEE
Confidence 23344444444443 2333333333322100 0000 011112345569999999986543 334445799999
Q ss_pred cccccccCC------cchHHHHHH--HhccccceEeeccccccC------CHHHHHHHHHhhcCCCCCChHHHHHHHhhh
Q 000496 434 VDEGHRLKN------KDSKLFSSL--KQYSTRHRVLLTGTPLQN------NLDELFMLMHFLDAGKFGSLEEFQEEFKDI 499 (1462)
Q Consensus 434 VDEAHrlKN------~~Sk~~~~l--~~l~~~~rLLLTGTPlqN------nl~EL~sLL~fL~p~~f~~~~~F~e~f~~~ 499 (1462)
+|||||--+ ..|.+.+.- ..+++..||.|||||--- +..+=-..+ .-+.+...|.+.|..+
T Consensus 310 cDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l-----~SMDDe~~fGeef~rl 384 (1518)
T COG4889 310 CDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAEL-----SSMDDELTFGEEFHRL 384 (1518)
T ss_pred ecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhcccee-----eccchhhhhchhhhcc
Confidence 999999643 112221111 234567899999999210 011100000 0112233344444333
Q ss_pred hhHHHHHHHHHhhchhhhhhhHhhHhhc-CCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCc------hhhHHHH
Q 000496 500 NQEEQISRLHRMLAPHLLRRVKKDVMKE-LPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGA------QISLINV 572 (1462)
Q Consensus 500 ~~~~~i~~L~~lL~p~~LRR~K~dV~~~-LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~------~~~l~ni 572 (1462)
.-.+.+ ..+ |...+..++.|.---.+.. ........+. ...+..+
T Consensus 385 ~FgeAv-------------------~rdlLTDYKVmvlaVd~~~i~~~---------~~~~~~~~~~~L~~dd~~kIvG~ 436 (1518)
T COG4889 385 GFGEAV-------------------ERDLLTDYKVMVLAVDKEVIAGV---------LQSVLSGPSKGLALDDVSKIVGC 436 (1518)
T ss_pred cHHHHH-------------------HhhhhccceEEEEEechhhhhhh---------hhhhccCcccccchhhhhhhhhh
Confidence 322222 212 3444555555542111111 1111111000 0011111
Q ss_pred HHHHHHHhC--CcccccCCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHH-----HHHHHHH
Q 000496 573 VMELRKLCC--HPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLD-----LLEDYLT 645 (1462)
Q Consensus 573 l~~LRk~c~--hP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ld-----iLed~L~ 645 (1462)
-.-|.+-.. .|-.-......+....-.+..-+..|.++.- +|..+++ +..+ ..
T Consensus 437 wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~-------------------sFe~Vve~Y~~Elk~d-~~ 496 (1518)
T COG4889 437 WNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAE-------------------SFETVVEAYDEELKKD-FK 496 (1518)
T ss_pred hhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHH-------------------HHHHHHHHHHHHHHhc-CC
Confidence 111111110 0000000000011111112222222322221 1111111 1112 12
Q ss_pred hcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCC
Q 000496 646 FKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1462)
Q Consensus 646 ~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k 725 (1462)
...+...-+||.|...+|......-|......-.+|-..||+++|+++++.|.||||||--+--..+|+.||+.|....|
T Consensus 497 nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK 576 (1518)
T COG4889 497 NLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGK 576 (1518)
T ss_pred CceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCC
Confidence 23456677999999999966555444423333457889999999999999999999999888888899999999976554
No 81
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.61 E-value=9.1e-14 Score=163.44 Aligned_cols=325 Identities=15% Similarity=0.244 Sum_probs=221.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHhCCCC-----cEEEEEcc-hhHHHHHHHHHHHC-
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERIS-----PHLVVAPL-STLRNWEREFATWA- 356 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~L~~~~~~-----p~LIVvP~-sll~qW~~E~~k~~- 356 (1462)
.|...|...+-.. ..|..+|-|.-+|+|||+.. +-+|..|+..+.+ -.|||.|+ .+..|--.-+.+..
T Consensus 91 ~~teiQ~~~Ip~a----L~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk 166 (758)
T KOG0343|consen 91 KMTEIQRDTIPMA----LQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGK 166 (758)
T ss_pred cHHHHHHhhcchh----ccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhh
Confidence 4667888887544 57888889999999999873 4566677665432 68999998 45556555554433
Q ss_pred -CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh---hcccCCCcceeE
Q 000496 357 -PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SASLKPIKWQCM 432 (1462)
Q Consensus 357 -P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d---~~~L~~i~w~~V 432 (1462)
-++..-.+.|..+...... .....+|+|+|...+... ...|..-...++
T Consensus 167 ~h~fSaGLiiGG~~~k~E~e---------------------------Ri~~mNILVCTPGRLLQHmde~~~f~t~~lQmL 219 (758)
T KOG0343|consen 167 HHDFSAGLIIGGKDVKFELE---------------------------RISQMNILVCTPGRLLQHMDENPNFSTSNLQML 219 (758)
T ss_pred ccccccceeecCchhHHHHH---------------------------hhhcCCeEEechHHHHHHhhhcCCCCCCcceEE
Confidence 2566666677765432111 124678999999999764 334566678899
Q ss_pred ecccccccCCcc--hHHHHHHHhcc-ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000496 433 IVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1462)
Q Consensus 433 IVDEAHrlKN~~--Sk~~~~l~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~ 509 (1462)
|+|||.|+-... ..+-..+..+. .+..||.|||+ .+++.+|.-
T Consensus 220 vLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATq-t~svkdLaR--------------------------------- 265 (758)
T KOG0343|consen 220 VLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQ-TKSVKDLAR--------------------------------- 265 (758)
T ss_pred EeccHHHHHHHhHHHHHHHHHHhCChhheeeeeeccc-chhHHHHHH---------------------------------
Confidence 999999986432 33444455554 34568999998 222232221
Q ss_pred HhhchhhhhhhHhhHhhcCCCceeEEEe---ecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccc
Q 000496 510 RMLAPHLLRRVKKDVMKELPPKKELILR---VELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1462)
Q Consensus 510 ~lL~p~~LRR~K~dV~~~LPpk~e~iv~---v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~ 586 (1462)
+ .|-......+. +.-+|.+ |++. |+
T Consensus 266 -L---------------sL~dP~~vsvhe~a~~atP~~-------------------------------L~Q~----y~- 293 (758)
T KOG0343|consen 266 -L---------------SLKDPVYVSVHENAVAATPSN-------------------------------LQQS----YV- 293 (758)
T ss_pred -h---------------hcCCCcEEEEeccccccChhh-------------------------------hhhe----EE-
Confidence 0 11111111111 0001110 1110 10
Q ss_pred cCCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHh--cCCeEEEEecCCCHHHHH
Q 000496 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGGAERQ 664 (1462)
Q Consensus 587 ~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~--~gi~~~rIdGst~~~eRq 664 (1462)
++....|+.+|...|.... ..|.|||...-.....+...+.. -|++...++|.+++..|.
T Consensus 294 ----------------~v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ 355 (758)
T KOG0343|consen 294 ----------------IVPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRI 355 (758)
T ss_pred ----------------EEehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHH
Confidence 1122347777777777654 46899998888888887777654 399999999999999999
Q ss_pred HHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCCCHHHHHHH
Q 000496 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 744 (1462)
Q Consensus 665 ~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e 744 (1462)
.+..+|... +-++|.+|..++.||+++.+|.||-+|.|=+-..|+.|.||..|.+..-...+|- --+-||.|+.
T Consensus 356 ev~~~F~~~---~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L---~psEeE~~l~ 429 (758)
T KOG0343|consen 356 EVYKKFVRK---RAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLML---TPSEEEAMLK 429 (758)
T ss_pred HHHHHHHHh---cceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEE---cchhHHHHHH
Confidence 999999763 3358999999999999999999999999999999999999999998877665543 3456788998
Q ss_pred HHHHHH
Q 000496 745 MTKKKM 750 (1462)
Q Consensus 745 ~~~kK~ 750 (1462)
++++|.
T Consensus 430 ~Lq~k~ 435 (758)
T KOG0343|consen 430 KLQKKK 435 (758)
T ss_pred HHHHcC
Confidence 888875
No 82
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.61 E-value=7.4e-14 Score=157.50 Aligned_cols=307 Identities=17% Similarity=0.227 Sum_probs=204.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHH-HHHHHHHHHhCCCC-cEEEEEcchh-HHHHHHHHHHHC--CCC
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERIS-PHLVVAPLST-LRNWEREFATWA--PQM 359 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiq-aIa~l~~L~~~~~~-p~LIVvP~sl-l~qW~~E~~k~~--P~l 359 (1462)
+..|-|..++--+ ..|+.||=+.-+|+|||.. ++-++..|.....+ -.||++|+.- -.|-...|.-.. -++
T Consensus 29 ~pTpiQ~~cIpkI----LeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 29 KPTPIQQACIPKI----LEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCchHhhhhHHH----hcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 4667888887665 6799999999999999976 45556666555555 5699999844 455555554433 256
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh-cccCCC-----cceeEe
Q 000496 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS-ASLKPI-----KWQCMI 433 (1462)
Q Consensus 360 ~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~-~~L~~i-----~w~~VI 433 (1462)
++.+++|..+--..-.. -..+.|+||+|.+.+.... +.+... +..++|
T Consensus 105 K~~vivGG~d~i~qa~~--------------------------L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 105 KVSVIVGGTDMIMQAAI--------------------------LSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred eEEEEEccHHHhhhhhh--------------------------cccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 77777777543211110 1246789999998874321 111112 336899
Q ss_pred cccccccCCcch--HHHHHHHhccc-cceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHH
Q 000496 434 VDEGHRLKNKDS--KLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1462)
Q Consensus 434 VDEAHrlKN~~S--k~~~~l~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~ 510 (1462)
+|||.++-+..- .+.-....++. +-.+++|||- .+++.+++.
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATi-td~i~ql~~---------------------------------- 203 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATI-TDTIKQLFG---------------------------------- 203 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCccceEEEEeeh-hhHHHHhhc----------------------------------
Confidence 999999865321 11111222222 2457777772 222211110
Q ss_pred hhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCC
Q 000496 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1462)
Q Consensus 511 lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e 590 (1462)
.|-..- -+|..+...
T Consensus 204 -----------------~~i~k~------------------------------------------------~a~~~e~~~ 218 (442)
T KOG0340|consen 204 -----------------CPITKS------------------------------------------------IAFELEVID 218 (442)
T ss_pred -----------------CCcccc------------------------------------------------cceEEeccC
Confidence 000000 000000000
Q ss_pred CCcccchHHH--HHHhhhchHHHHHHHHHHHHHH-cCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHH
Q 000496 591 PDIEDTNESF--KQLLESSGKLQLLDKMMVKLKE-QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (1462)
Q Consensus 591 ~~~~~~~~~~--~~li~~SgKl~~L~klL~~l~~-~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~I 667 (1462)
+......-. .-++...+|-..|..+|+...+ ....++||+|.+....+|.-.|+..++....+++.+++.+|-.++
T Consensus 219 -~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aL 297 (442)
T KOG0340|consen 219 -GVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAAL 297 (442)
T ss_pred -CCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHH
Confidence 000000000 1122345677888889988877 567899999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCC
Q 000496 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1462)
Q Consensus 668 d~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k 725 (1462)
.+|.++ ...+|++|.+++.|+++++++.||.||.+-.|..|+.|.||.-|-|..-
T Consensus 298 srFrs~---~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G 352 (442)
T KOG0340|consen 298 SRFRSN---AARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKG 352 (442)
T ss_pred HHHhhc---CccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCc
Confidence 999763 4458999999999999999999999999999999999999999988775
No 83
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.61 E-value=9.8e-14 Score=162.84 Aligned_cols=141 Identities=18% Similarity=0.365 Sum_probs=102.4
Q ss_pred HHhhhchHHHH--HHHHHHHHHH--cCCeEEEEecchhhHHHHHHHH----Hh------------------cCCeEEEEe
Q 000496 602 QLLESSGKLQL--LDKMMVKLKE--QGHRVLIYSQFQHMLDLLEDYL----TF------------------KKWQYERID 655 (1462)
Q Consensus 602 ~li~~SgKl~~--L~klL~~l~~--~g~KVLIFSq~~~~ldiLed~L----~~------------------~gi~~~rId 655 (1462)
+.+-..+|+.+ |..+|....+ ...|+|||..-.++.+.=.+.| .. .+.++.|++
T Consensus 399 ry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLH 478 (708)
T KOG0348|consen 399 RYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLH 478 (708)
T ss_pred ceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEec
Confidence 33344555543 4555554432 3458899977776655433333 22 245699999
Q ss_pred cCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecC
Q 000496 656 GKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1462)
Q Consensus 656 Gst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~ 735 (1462)
|++++++|......|..... ++|++|++++.||||+.+..||-||++..+..++.|+||.-|+|-+-.-..|-+ .
T Consensus 479 Gsm~QeeRts~f~~Fs~~~~---~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~--P 553 (708)
T KOG0348|consen 479 GSMEQEERTSVFQEFSHSRR---AVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLL--P 553 (708)
T ss_pred CchhHHHHHHHHHhhccccc---eEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEec--c
Confidence 99999999999999976444 489999999999999999999999999999999999999999998876654433 3
Q ss_pred CCHHHHHHHHHHHH
Q 000496 736 GSIEERMMQMTKKK 749 (1462)
Q Consensus 736 ~TiEE~I~e~~~kK 749 (1462)
. |+..+..++.+
T Consensus 554 ~--Eaey~~~l~~~ 565 (708)
T KOG0348|consen 554 S--EAEYVNYLKKH 565 (708)
T ss_pred c--HHHHHHHHHhh
Confidence 2 33344444444
No 84
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.60 E-value=5.6e-14 Score=182.82 Aligned_cols=330 Identities=19% Similarity=0.228 Sum_probs=220.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHC---C-C
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPL-STLRNWEREFATWA---P-Q 358 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~---P-~ 358 (1462)
.|+.||.++++.+ .+|+++|+.-.||+|||... +.++..+........|+|-|. .|.......|.+|. | .
T Consensus 70 ~lY~HQ~~A~~~~----~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~ 145 (851)
T COG1205 70 RLYSHQVDALRLI----REGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGK 145 (851)
T ss_pred cccHHHHHHHHHH----HCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCc
Confidence 4999999999877 78899999999999999986 455556666655689999997 55566777787776 3 4
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh------hcccCCCcceeE
Q 000496 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD------SASLKPIKWQCM 432 (1462)
Q Consensus 359 l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d------~~~L~~i~w~~V 432 (1462)
+++..|+|+........ + -..+.+|++|+|+|+... ...+..-++.+|
T Consensus 146 v~~~~y~Gdt~~~~r~~---~-----------------------~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~l 199 (851)
T COG1205 146 VTFGRYTGDTPPEERRA---I-----------------------IRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYL 199 (851)
T ss_pred ceeeeecCCCChHHHHH---H-----------------------HhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEE
Confidence 67788888765432210 0 124789999999999652 111112247899
Q ss_pred ecccccccCCc-chHHHHHHHhcc--------ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHH
Q 000496 433 IVDEGHRLKNK-DSKLFSSLKQYS--------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEE 503 (1462)
Q Consensus 433 IVDEAHrlKN~-~Sk~~~~l~~l~--------~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~ 503 (1462)
||||+|-.++. .|...-.++.+. ....++.|||- ++..+|.+.+......
T Consensus 200 VvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f~- 258 (851)
T COG1205 200 VVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDFE- 258 (851)
T ss_pred EEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCcce-
Confidence 99999999764 444444444432 23457888883 2333333332211000
Q ss_pred HHHHHHHhhchhhhhhhHhhHhhc-CCCceeEEEe-ecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhC
Q 000496 504 QISRLHRMLAPHLLRRVKKDVMKE-LPPKKELILR-VELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (1462)
Q Consensus 504 ~i~~L~~lL~p~~LRR~K~dV~~~-LPpk~e~iv~-v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~ 581 (1462)
..|..+ -|....+.+. -+........
T Consensus 259 ------------------~~v~~~g~~~~~~~~~~~~p~~~~~~~~---------------------------------- 286 (851)
T COG1205 259 ------------------VPVDEDGSPRGLRYFVRREPPIRELAES---------------------------------- 286 (851)
T ss_pred ------------------eeccCCCCCCCceEEEEeCCcchhhhhh----------------------------------
Confidence 001111 1111111111 1110000000
Q ss_pred CcccccCCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHH----HHHHhcC----CeEEE
Q 000496 582 HPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLE----DYLTFKK----WQYER 653 (1462)
Q Consensus 582 hP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLe----d~L~~~g----i~~~r 653 (1462)
..-.+...+..++..+...|-++|+|+.....+..+. ..+...+ ..+..
T Consensus 287 -----------------------~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~ 343 (851)
T COG1205 287 -----------------------IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVST 343 (851)
T ss_pred -----------------------cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheee
Confidence 0123455667777778888999999999999988886 3333344 56788
Q ss_pred EecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCC-ChhhHHHHHhhhhccCCCCcEEEEEE
Q 000496 654 IDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKVMIFRL 732 (1462)
Q Consensus 654 IdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dW-NP~~d~QAigRahRiGQ~k~V~VyrL 732 (1462)
+.|++...+|..+...|..++ +.++++|.|+-.||++...+.||.+-.+- .-..+.|+.||++|-||.- .++..
T Consensus 344 ~~~~~~~~er~~ie~~~~~g~---~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~--l~~~v 418 (851)
T COG1205 344 YRAGLHREERRRIEAEFKEGE---LLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQES--LVLVV 418 (851)
T ss_pred ccccCCHHHHHHHHHHHhcCC---ccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCc--eEEEE
Confidence 899999999999999997644 44899999999999999999999999998 7799999999999999543 33333
Q ss_pred ecCCCHHHHHHHH
Q 000496 733 ITRGSIEERMMQM 745 (1462)
Q Consensus 733 vt~~TiEE~I~e~ 745 (1462)
.-.+-++..++..
T Consensus 419 ~~~~~~d~yy~~~ 431 (851)
T COG1205 419 LRSDPLDSYYLRH 431 (851)
T ss_pred eCCCccchhhhhC
Confidence 3366677766543
No 85
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.60 E-value=3.5e-15 Score=151.44 Aligned_cols=120 Identities=28% Similarity=0.457 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeecccc
Q 000496 608 GKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (1462)
Q Consensus 608 gKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTrag 687 (1462)
.|+..+..++.+....+.++|||+.....++.+.++|...+.++..++|+++..+|..+++.|+.+. ..+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE---IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC---CcEEEEcChh
Confidence 6888889999887767899999999999999999999988999999999999999999999998755 4589999999
Q ss_pred ccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEE
Q 000496 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1462)
Q Consensus 688 g~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~Vy 730 (1462)
++|+|++.+++||+++++||+..++|++||++|.||+..|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998877764
No 86
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.60 E-value=3.3e-13 Score=173.64 Aligned_cols=153 Identities=18% Similarity=0.217 Sum_probs=103.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCCCCeEE
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vv 362 (1462)
..|.++|.++++.+...+ .+...+|...+|+|||...+..+......+ +.+||++|. ++..|+.+.|.+.+ +..+.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-~~vLvLvPt~~L~~Q~~~~l~~~f-g~~v~ 219 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-KQALVLVPEIALTPQMLARFRARF-GAPVA 219 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHh-CCCEE
Confidence 479999999998875543 456789999999999999877766655443 479999997 78899999999887 46788
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEecccccccCC
Q 000496 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (1462)
Q Consensus 363 vy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEAHrlKN 442 (1462)
+++|..........+.- ......+|+|+|+..+.. .+ -+..+|||||+|...-
T Consensus 220 ~~~s~~s~~~r~~~~~~----------------------~~~g~~~IVVgTrsal~~---p~--~~l~liVvDEeh~~s~ 272 (679)
T PRK05580 220 VLHSGLSDGERLDEWRK----------------------AKRGEAKVVIGARSALFL---PF--KNLGLIIVDEEHDSSY 272 (679)
T ss_pred EEECCCCHHHHHHHHHH----------------------HHcCCCCEEEeccHHhcc---cc--cCCCEEEEECCCcccc
Confidence 88886544332211100 012356899999876531 12 2467999999998632
Q ss_pred --cchHHH-----HHHHh-ccccceEeecccc
Q 000496 443 --KDSKLF-----SSLKQ-YSTRHRVLLTGTP 466 (1462)
Q Consensus 443 --~~Sk~~-----~~l~~-l~~~~rLLLTGTP 466 (1462)
.....+ ..++. ......+++||||
T Consensus 273 ~~~~~p~y~~r~va~~ra~~~~~~~il~SATp 304 (679)
T PRK05580 273 KQQEGPRYHARDLAVVRAKLENIPVVLGSATP 304 (679)
T ss_pred ccCcCCCCcHHHHHHHHhhccCCCEEEEcCCC
Confidence 111111 11122 2344678899999
No 87
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.59 E-value=6.3e-15 Score=158.40 Aligned_cols=165 Identities=26% Similarity=0.408 Sum_probs=111.3
Q ss_pred CCCCHHHHHHHHHHHHhhccC---CcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCCCC
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM 359 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~---~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l 359 (1462)
.+|||||.+++.-++..+... .+++|..+||+|||++++.++..+.. ++|||||. +++.||..+|..+.+..
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~~~~~~~~ 77 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEFDDFGSEK 77 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHHHHHSTTS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHHHHhhhhh
Confidence 369999999998887777655 88999999999999999998888877 89999997 88899999998888665
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcc-------------cCC
Q 000496 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-------------LKP 426 (1462)
Q Consensus 360 ~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~-------------L~~ 426 (1462)
............. ...... ................+++++++..+...... +..
T Consensus 78 ~~~~~~~~~~~~~----~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 144 (184)
T PF04851_consen 78 YNFFEKSIKPAYD----SKEFIS---------IQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLK 144 (184)
T ss_dssp EEEEE--GGGCCE-----SEEET---------TTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGG
T ss_pred hhhcccccccccc----cccccc---------cccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhcc
Confidence 5443321110000 000000 00000001111234678999999999765322 122
Q ss_pred CcceeEecccccccCCcchHHHHHHHhccccceEeeccccc
Q 000496 427 IKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPL 467 (1462)
Q Consensus 427 i~w~~VIVDEAHrlKN~~Sk~~~~l~~l~~~~rLLLTGTPl 467 (1462)
-.+++||+||||++.+... ++.+..+...++|+|||||.
T Consensus 145 ~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 145 NKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp GSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred ccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 3678999999999866543 55555588889999999994
No 88
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.59 E-value=3.6e-14 Score=168.74 Aligned_cols=317 Identities=18% Similarity=0.234 Sum_probs=208.3
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHhCCCC-cEEEEEcc-hhHHHHHHHHHHHCC---CC
Q 000496 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERIS-PHLVVAPL-STLRNWEREFATWAP---QM 359 (1462)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~L~~~~~~-p~LIVvP~-sll~qW~~E~~k~~P---~l 359 (1462)
..+.|..++-.. ..+-..|+..-.|+|||+.. ++.+..|-..... ..|||+|+ .+--|-+..|...+| ++
T Consensus 48 ptkiQaaAIP~~----~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~ 123 (980)
T KOG4284|consen 48 PTKIQAAAIPAI----FSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGA 123 (980)
T ss_pred CCchhhhhhhhh----hcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCc
Confidence 345677776543 34567899999999999873 3344444333333 67999998 455677777887776 57
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hcccCCCcceeEecccc
Q 000496 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEG 437 (1462)
Q Consensus 360 ~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d--~~~L~~i~w~~VIVDEA 437 (1462)
++-+|.|+..-...... ..+.+|+|-|...+..- ...+..-+.+++|+|||
T Consensus 124 ~csvfIGGT~~~~d~~r---------------------------lk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEA 176 (980)
T KOG4284|consen 124 RCSVFIGGTAHKLDLIR---------------------------LKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEA 176 (980)
T ss_pred ceEEEecCchhhhhhhh---------------------------hhhceEEecCchHHHHHHHhcCCCccceeEEEeccH
Confidence 88888887654321111 13567999999988653 34555667789999999
Q ss_pred cccCCcch---HHHHHHHhcc-ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhc
Q 000496 438 HRLKNKDS---KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1462)
Q Consensus 438 HrlKN~~S---k~~~~l~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~ 513 (1462)
..|-...| .+...+..+. .+..+..|||=- .++. ..|.+.++
T Consensus 177 DkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp-~nLd---------------------------------n~Lsk~mr 222 (980)
T KOG4284|consen 177 DKLMDTESFQDDINIIINSLPQIRQVAAFSATYP-RNLD---------------------------------NLLSKFMR 222 (980)
T ss_pred HhhhchhhHHHHHHHHHHhcchhheeeEEeccCc-hhHH---------------------------------HHHHHHhc
Confidence 99965444 3444455554 345677888831 1111 12222232
Q ss_pred -hhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCC
Q 000496 514 -PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (1462)
Q Consensus 514 -p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~ 592 (1462)
|.++|-...|+ .|-..+.+++.+.--+ |
T Consensus 223 dp~lVr~n~~d~--~L~GikQyv~~~~s~n----------------------------n--------------------- 251 (980)
T KOG4284|consen 223 DPALVRFNADDV--QLFGIKQYVVAKCSPN----------------------------N--------------------- 251 (980)
T ss_pred ccceeecccCCc--eeechhheeeeccCCc----------------------------c---------------------
Confidence 22222222222 1111111111111000 0
Q ss_pred cccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhc
Q 000496 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (1462)
Q Consensus 593 ~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~ 672 (1462)
..+. .--|++.|-.++..+. -...||||....-++-|.++|...|+.+..|.|.|+..+|..+++.+.+
T Consensus 252 ------svee---mrlklq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~ 320 (980)
T KOG4284|consen 252 ------SVEE---MRLKLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA 320 (980)
T ss_pred ------hHHH---HHHHHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh
Confidence 0000 1114444555554432 1257999999999999999999999999999999999999999999965
Q ss_pred cCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEe
Q 000496 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 733 (1462)
Q Consensus 673 ~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLv 733 (1462)
-...+|+||...+.||+-..++.||.+|++-+-..|..|||||+|+|..- ..|-++.
T Consensus 321 ---f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G-~aVT~~~ 377 (980)
T KOG4284|consen 321 ---FRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG-AAVTLLE 377 (980)
T ss_pred ---ceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccc-eeEEEec
Confidence 34458999999999999999999999999999999999999999999764 4444444
No 89
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.58 E-value=2.9e-14 Score=166.29 Aligned_cols=322 Identities=16% Similarity=0.272 Sum_probs=208.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHH-HHHHHHHHHhCCC----CcEEEEEcchhH----HHHHHHHHHH
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERI----SPHLVVAPLSTL----RNWEREFATW 355 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiq-aIa~l~~L~~~~~----~p~LIVvP~sll----~qW~~E~~k~ 355 (1462)
...|.|...+--. .-|+..+-+.-+|+|||.. +|-+|..|+.... .++||+||+--| ++-.+.+..|
T Consensus 203 ~PTpIQ~a~IPva----llgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqF 278 (691)
T KOG0338|consen 203 KPTPIQVATIPVA----LLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQF 278 (691)
T ss_pred CCCchhhhcccHH----hhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 3556676665321 2366677788999999976 4555666654432 389999997333 4556777888
Q ss_pred CCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc---ccCCCcceeE
Q 000496 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKWQCM 432 (1462)
Q Consensus 356 ~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~---~L~~i~w~~V 432 (1462)
+ ++.+....|.-+-+..-... ....||||.|+..+..... .|.--...++
T Consensus 279 t-~I~~~L~vGGL~lk~QE~~L--------------------------Rs~PDIVIATPGRlIDHlrNs~sf~ldsiEVL 331 (691)
T KOG0338|consen 279 T-DITVGLAVGGLDLKAQEAVL--------------------------RSRPDIVIATPGRLIDHLRNSPSFNLDSIEVL 331 (691)
T ss_pred c-cceeeeeecCccHHHHHHHH--------------------------hhCCCEEEecchhHHHHhccCCCccccceeEE
Confidence 8 68888888887766532221 2467999999999865433 3333356789
Q ss_pred ecccccccCCcch-HHHHHHHhccccc--eEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000496 433 IVDEGHRLKNKDS-KLFSSLKQYSTRH--RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1462)
Q Consensus 433 IVDEAHrlKN~~S-k~~~~l~~l~~~~--rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~ 509 (1462)
|+|||.|+....- .-...+..+.+.+ .+|.|||- ...+.+|.+
T Consensus 332 vlDEADRMLeegFademnEii~lcpk~RQTmLFSATM-teeVkdL~s--------------------------------- 377 (691)
T KOG0338|consen 332 VLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATM-TEEVKDLAS--------------------------------- 377 (691)
T ss_pred EechHHHHHHHHHHHHHHHHHHhccccccceeehhhh-HHHHHHHHH---------------------------------
Confidence 9999999864321 1223333444444 48888883 111111111
Q ss_pred HhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCC
Q 000496 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1462)
Q Consensus 510 ~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~ 589 (1462)
+ +| ++...|+|..+..-. ..|..-+.++|
T Consensus 378 -l---------------SL--~kPvrifvd~~~~~a---------------------~~LtQEFiRIR------------ 406 (691)
T KOG0338|consen 378 -L---------------SL--NKPVRIFVDPNKDTA---------------------PKLTQEFIRIR------------ 406 (691)
T ss_pred -h---------------hc--CCCeEEEeCCccccc---------------------hhhhHHHheec------------
Confidence 1 11 111122222111000 00000000000
Q ss_pred CCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHH
Q 000496 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1462)
Q Consensus 590 e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~ 669 (1462)
+.. ..-+-.+|..++.++. ..+++||.+.......|.-.|...|+++.-++|+.++.+|-..+..
T Consensus 407 -~~r------------e~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~k 471 (691)
T KOG0338|consen 407 -PKR------------EGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEK 471 (691)
T ss_pred -ccc------------ccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHH
Confidence 000 0012233444555544 5689999999999999999999999999999999999999999999
Q ss_pred HhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCC-CcEEEEEEecCCCHHHHHHHH
Q 000496 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT-NKVMIFRLITRGSIEERMMQM 745 (1462)
Q Consensus 670 Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~-k~V~VyrLvt~~TiEE~I~e~ 745 (1462)
|.+..- -|||+|..++.||++..+.+||.|+.|-+...|++|.||.-|-|.. +.| -|+.++ |.+|+.-
T Consensus 472 Fk~~ei---dvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsV---tlvgE~--dRkllK~ 540 (691)
T KOG0338|consen 472 FKKEEI---DVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSV---TLVGES--DRKLLKE 540 (691)
T ss_pred HHhccC---CEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceE---EEeccc--cHHHHHH
Confidence 976444 4899999999999999999999999999999999999999999865 344 466666 5555543
No 90
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.58 E-value=1.4e-13 Score=160.31 Aligned_cols=319 Identities=18% Similarity=0.274 Sum_probs=211.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHH-HHHHHh-----CCCCcE-EEEEcc-hhHHHHHHHHHHHC
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFG-----ERISPH-LVVAPL-STLRNWEREFATWA 356 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~-l~~L~~-----~~~~p~-LIVvP~-sll~qW~~E~~k~~ 356 (1462)
+..|.|-.+|--. ..++.+|=-.-+|+|||-..|.- +.++.. .+.+|+ |||||. ++..|-..|.++|.
T Consensus 245 kptpiq~qalpta----lsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~ 320 (731)
T KOG0339|consen 245 KPTPIQCQALPTA----LSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFG 320 (731)
T ss_pred cCCcccccccccc----cccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhh
Confidence 3455666665432 35666776677999999654322 222222 134576 678887 77888999999885
Q ss_pred --CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcceeE
Q 000496 357 --PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCM 432 (1462)
Q Consensus 357 --P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~w~~V 432 (1462)
-+++++..+|....-..+... .....+||+|.+.+.... ....-.+-.+|
T Consensus 321 K~ygl~~v~~ygGgsk~eQ~k~L--------------------------k~g~EivVaTPgRlid~VkmKatn~~rvS~L 374 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSKWEQSKEL--------------------------KEGAEIVVATPGRLIDMVKMKATNLSRVSYL 374 (731)
T ss_pred hhccceEEEeecCCcHHHHHHhh--------------------------hcCCeEEEechHHHHHHHHhhcccceeeeEE
Confidence 367888877776554443332 135679999999875432 12222345789
Q ss_pred ecccccccCC--cchHHHHHHHhcccc-ceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000496 433 IVDEGHRLKN--KDSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1462)
Q Consensus 433 IVDEAHrlKN--~~Sk~~~~l~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~ 509 (1462)
|+|||.|+-. ...+.......++.. ..|+.|+|- . ..+.+|.
T Consensus 375 V~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf--------------------------~---------~kIe~la 419 (731)
T KOG0339|consen 375 VLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATF--------------------------K---------KKIEKLA 419 (731)
T ss_pred EEechhhhhccccHHHHHHHHhhcCCcceEEEeeccc--------------------------h---------HHHHHHH
Confidence 9999999854 333444444555544 457778772 1 1111111
Q ss_pred HhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCC
Q 000496 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1462)
Q Consensus 510 ~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~ 589 (1462)
.+++. -|.......|.+- +. -+.+..-+|
T Consensus 420 ------------rd~L~--dpVrvVqg~vgea---------------------n~-------dITQ~V~V~--------- 448 (731)
T KOG0339|consen 420 ------------RDILS--DPVRVVQGEVGEA---------------------NE-------DITQTVSVC--------- 448 (731)
T ss_pred ------------HHHhc--CCeeEEEeehhcc---------------------cc-------chhheeeec---------
Confidence 11110 0111111111100 00 000000011
Q ss_pred CCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHH
Q 000496 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1462)
Q Consensus 590 e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~ 669 (1462)
.....|+..|.+-|......| +||||..-....+-|...|..+|+++..++|++.+.+|.+.|..
T Consensus 449 --------------~s~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~ 513 (731)
T KOG0339|consen 449 --------------PSEEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSK 513 (731)
T ss_pred --------------cCcHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHH
Confidence 112346777777676665555 89999999999999999999999999999999999999999999
Q ss_pred HhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCCCHH
Q 000496 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1462)
Q Consensus 670 Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiE 739 (1462)
|...... +|+.|....+|+++....+||+||..-.-..+.|+|||.+|-|-+ -..|-|||....+
T Consensus 514 fKkk~~~---VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 514 FKKKRKP---VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred HhhcCCc---eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 9876555 899999999999999999999999999999999999999999987 5678888876544
No 91
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=4.9e-13 Score=166.44 Aligned_cols=94 Identities=20% Similarity=0.236 Sum_probs=75.6
Q ss_pred HHHHHHHHHhc--CCeEEEEecCCCHHHH--HHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCC---Ch-
Q 000496 637 LDLLEDYLTFK--KWQYERIDGKVGGAER--QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW---NP- 708 (1462)
Q Consensus 637 ldiLed~L~~~--gi~~~rIdGst~~~eR--q~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dW---NP- 708 (1462)
.+.+++.|... +.++.++|+.++...+ ..+++.|.++.. .+|++|...+.|+|++.++.|+++|.|- .|
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~---~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKA---DILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCC---CEEEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 56777777654 7899999999876665 889999976444 4899999999999999999998887763 23
Q ss_pred --------hhHHHHHhhhhccCCCCcEEEEEEe
Q 000496 709 --------HADLQAMARAHRLGQTNKVMIFRLI 733 (1462)
Q Consensus 709 --------~~d~QAigRahRiGQ~k~V~VyrLv 733 (1462)
+.+.|+.||++|.+....|.|..+-
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~ 380 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYN 380 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEEEEEeCC
Confidence 6789999999998877777655433
No 92
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.54 E-value=7.7e-13 Score=168.53 Aligned_cols=129 Identities=18% Similarity=0.199 Sum_probs=111.8
Q ss_pred hchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeecc
Q 000496 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1462)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTr 685 (1462)
...|+.++.+-+..+.+.|..|||||..+...+.|..+|...|+++..++|.....+|+.+.+.|..+ .++|+|.
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G-----~VtIATN 500 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG-----AVTIATN 500 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC-----cEEEecc
Confidence 46799999999999999999999999999999999999999999999999999999999999999764 2799999
Q ss_pred ccccccCcccC--------------------------------------CEEEEecCCCChhhHHHHHhhhhccCCCCcE
Q 000496 686 AGGLGINLATA--------------------------------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (1462)
Q Consensus 686 agg~GINL~~A--------------------------------------d~VIi~D~dWNP~~d~QAigRahRiGQ~k~V 727 (1462)
.+|.|+++.=. =+||.-.-.=|-..+.|-.||++|.|..-..
T Consensus 501 mAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss 580 (896)
T PRK13104 501 MAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSS 580 (896)
T ss_pred CccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 99999998621 2788888999999999999999999988766
Q ss_pred EEEEEecCCCHHHHHHH
Q 000496 728 MIFRLITRGSIEERMMQ 744 (1462)
Q Consensus 728 ~VyrLvt~~TiEE~I~e 744 (1462)
..|. |+|..++.
T Consensus 581 ~f~l-----SleD~l~~ 592 (896)
T PRK13104 581 RFYL-----SLEDNLMR 592 (896)
T ss_pred EEEE-----EcCcHHHH
Confidence 5543 34555543
No 93
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.53 E-value=9.1e-13 Score=176.70 Aligned_cols=131 Identities=16% Similarity=0.169 Sum_probs=92.1
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCCCC--e
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM--N 360 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l--~ 360 (1462)
..+.++|..++..+ ..|.+.++...+|+|||.-++.++..+... ...+|||+|+ .+..|+.+.|..++..+ .
T Consensus 77 ~~p~~iQ~~~i~~i----l~G~d~vi~ApTGsGKT~f~l~~~~~l~~~-g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~ 151 (1171)
T TIGR01054 77 SEPWSIQKMWAKRV----LRGDSFAIIAPTGVGKTTFGLAMSLFLAKK-GKRCYIILPTTLLVIQVAEKISSLAEKAGVG 151 (1171)
T ss_pred CCCcHHHHHHHHHH----hCCCeEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCc
Confidence 45788999988665 578899999999999998665555544333 3489999997 77789999999887543 2
Q ss_pred E---EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEecccc
Q 000496 361 V---VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEG 437 (1462)
Q Consensus 361 v---vvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEA 437 (1462)
+ ..|+|...........+. .....++|+|+|...+......+.. .++++|||||
T Consensus 152 ~~~i~~~~Gg~~~~e~~~~~~~----------------------l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEa 208 (1171)
T TIGR01054 152 TVNIGAYHSRLPTKEKKEFMER----------------------IENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDV 208 (1171)
T ss_pred eeeeeeecCCCCHHHHHHHHHH----------------------HhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeCh
Confidence 2 246665433221111000 0113589999999999876555554 7999999999
Q ss_pred cccCC
Q 000496 438 HRLKN 442 (1462)
Q Consensus 438 HrlKN 442 (1462)
|++-.
T Consensus 209 D~~L~ 213 (1171)
T TIGR01054 209 DALLK 213 (1171)
T ss_pred Hhhhh
Confidence 99854
No 94
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.52 E-value=6.1e-13 Score=151.56 Aligned_cols=316 Identities=18% Similarity=0.293 Sum_probs=207.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHH--HHHHH-----HhCCCC-cEEEEEcc-hhHHHHHHHHHHH
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA--FLASL-----FGERIS-PHLVVAPL-STLRNWEREFATW 355 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa--~l~~L-----~~~~~~-p~LIVvP~-sll~qW~~E~~k~ 355 (1462)
+..|.|-++ |- ....|..+|-...+|.|||+.-+. ++... +....+ ..||++|. .+..|-.-|..++
T Consensus 242 KPtPIqSQa--WP--I~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 242 KPTPIQSQA--WP--ILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCcchhcc--cc--eeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 455666655 42 226788999999999999976431 11111 122334 57888997 4445666666554
Q ss_pred C-CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hcccCCCcceeE
Q 000496 356 A-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCM 432 (1462)
Q Consensus 356 ~-P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d--~~~L~~i~w~~V 432 (1462)
- -.+..++++|....-..+.+. ..+.+++|.|...+... ...+.--...+|
T Consensus 318 syng~ksvc~ygggnR~eqie~l--------------------------krgveiiiatPgrlndL~~~n~i~l~siTYl 371 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGNRNEQIEDL--------------------------KRGVEIIIATPGRLNDLQMDNVINLASITYL 371 (629)
T ss_pred hhcCcceEEEecCCCchhHHHHH--------------------------hcCceEEeeCCchHhhhhhcCeeeeeeeEEE
Confidence 3 456677777766544444442 24678999999887542 233333356789
Q ss_pred ecccccccCC--cchHHHHHHHhccccceEee-ccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000496 433 IVDEGHRLKN--KDSKLFSSLKQYSTRHRVLL-TGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1462)
Q Consensus 433 IVDEAHrlKN--~~Sk~~~~l~~l~~~~rLLL-TGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~ 509 (1462)
|+|||.++.. ..-++.+.|..++..+...| |||-
T Consensus 372 VlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATW------------------------------------------- 408 (629)
T KOG0336|consen 372 VLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATW------------------------------------------- 408 (629)
T ss_pred EecchhhhhcccccHHHHHHhhhcCCcceeeeecccC-------------------------------------------
Confidence 9999999864 56688888988887766555 4551
Q ss_pred HhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCC
Q 000496 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1462)
Q Consensus 510 ~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~ 589 (1462)
|.-+||+....++ ...+++|.--. .+++|. +
T Consensus 409 ----P~~VrrLa~sY~K-----ep~~v~vGsLd-----------------------------------L~a~~s-----V 439 (629)
T KOG0336|consen 409 ----PEGVRRLAQSYLK-----EPMIVYVGSLD-----------------------------------LVAVKS-----V 439 (629)
T ss_pred ----chHHHHHHHHhhh-----CceEEEecccc-----------------------------------eeeeee-----e
Confidence 1111222211111 11122221000 000000 0
Q ss_pred CCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHH
Q 000496 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1462)
Q Consensus 590 e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~ 669 (1462)
...+ .....+.|+..+..++..+ ....|||||+...-++|-|..-|...|+....|+|.-.+.+|+.+++.
T Consensus 440 kQ~i--------~v~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~ 510 (629)
T KOG0336|consen 440 KQNI--------IVTTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALED 510 (629)
T ss_pred eeeE--------EecccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHh
Confidence 0000 0011234554444444443 457899999999999999999999999999999999999999999999
Q ss_pred HhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCC
Q 000496 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1462)
Q Consensus 670 Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1462)
|. ++.+.+|++|..++.||+++...+|+.||.+-|-..|..++||.+|.|.+-.-. -|++.+
T Consensus 511 ~k---sG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~si--s~lt~~ 572 (629)
T KOG0336|consen 511 FK---SGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSI--SFLTRN 572 (629)
T ss_pred hh---cCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceE--EEEehh
Confidence 95 567779999999999999999999999999999999999999999999775332 244444
No 95
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.52 E-value=4.5e-13 Score=151.92 Aligned_cols=335 Identities=18% Similarity=0.245 Sum_probs=203.8
Q ss_pred CCCcccccccCCCCCCCC------CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC----CCC-
Q 000496 266 KKPKEFQQYEHSPEFLSG------GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE----RIS- 334 (1462)
Q Consensus 266 ~~~~~~~~~~~~P~~~~g------~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~----~~~- 334 (1462)
-..+.|..+.-.|..+.| ......|..++-.| +.....|.|-....|+|||.. |...++.+ ...
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPll--l~~Pp~nlIaQsqsGtGKTaa---FvL~MLsrvd~~~~~P 161 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLL--LAEPPQNLIAQSQSGTGKTAA---FVLTMLSRVDPDVVVP 161 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchh--hcCCchhhhhhhcCCCchhHH---HHHHHHHhcCccccCC
Confidence 345778888888887765 23455677777655 335677888889999999964 33333322 112
Q ss_pred cEEEEEcc-hhHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEec
Q 000496 335 PHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTS 413 (1462)
Q Consensus 335 p~LIVvP~-sll~qW~~E~~k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItS 413 (1462)
-.+.++|. .+..|-..-+.+-.....+..-+.-+..+. .+.....-+|+|-|
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~---------------------------~rG~~i~eqIviGT 214 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKA---------------------------KRGNKLTEQIVIGT 214 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccc---------------------------ccCCcchhheeeCC
Confidence 35666997 555665544444332112211111111100 01122455789988
Q ss_pred HHHHHhhhcccCC---CcceeEecccccccCCcch---HHHHHHHhcc-ccceEeeccccccCCHHHHHHHHHhhcCCCC
Q 000496 414 YEMINLDSASLKP---IKWQCMIVDEGHRLKNKDS---KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKF 486 (1462)
Q Consensus 414 Ye~l~~d~~~L~~---i~w~~VIVDEAHrlKN~~S---k~~~~l~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f 486 (1462)
..++..-...|+. -+..++|+|||..+-+... ...+..+.+. ....++.|||- .|
T Consensus 215 PGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf-----~e------------- 276 (477)
T KOG0332|consen 215 PGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATF-----VE------------- 276 (477)
T ss_pred CccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechh-----HH-------------
Confidence 8888664443333 3567899999998866542 2222333343 45567788872 00
Q ss_pred CChHHHHHHHhhhhhHHHHHHHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCch
Q 000496 487 GSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQ 566 (1462)
Q Consensus 487 ~~~~~F~e~f~~~~~~~~i~~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~ 566 (1462)
....|...+. .--.+.+|||- ++ .|++..+..+-|.
T Consensus 277 -~V~~Fa~kiv------------pn~n~i~Lk~e--el--~L~~IkQlyv~C~--------------------------- 312 (477)
T KOG0332|consen 277 -KVAAFALKIV------------PNANVIILKRE--EL--ALDNIKQLYVLCA--------------------------- 312 (477)
T ss_pred -HHHHHHHHhc------------CCCceeeeehh--hc--cccchhhheeecc---------------------------
Confidence 0001111000 00011122211 00 2222222222221
Q ss_pred hhHHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHh
Q 000496 567 ISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF 646 (1462)
Q Consensus 567 ~~l~nil~~LRk~c~hP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~ 646 (1462)
| ...|+.+|..| -.+..-| ..||||+-...+..|...|..
T Consensus 313 ---------------~-----------------------~~~K~~~l~~l-yg~~tig-qsiIFc~tk~ta~~l~~~m~~ 352 (477)
T KOG0332|consen 313 ---------------C-----------------------RDDKYQALVNL-YGLLTIG-QSIIFCHTKATAMWLYEEMRA 352 (477)
T ss_pred ---------------c-----------------------hhhHHHHHHHH-Hhhhhhh-heEEEEeehhhHHHHHHHHHh
Confidence 1 12355555552 2333333 579999999999999999999
Q ss_pred cCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCC------ChhhHHHHHhhhhc
Q 000496 647 KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------NPHADLQAMARAHR 720 (1462)
Q Consensus 647 ~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dW------NP~~d~QAigRahR 720 (1462)
.|+.+..++|.+...+|..+|++|..+.+ -+|++|.++++||+.+.++.||.||.+- .|..|++|+||.+|
T Consensus 353 ~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~---kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGR 429 (477)
T KOG0332|consen 353 EGHQVSLLHGDLTVEQRAAIIDRFREGKE---KVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGR 429 (477)
T ss_pred cCceeEEeeccchhHHHHHHHHHHhcCcc---eEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhccccc
Confidence 99999999999999999999999987554 4899999999999999999999999874 57899999999999
Q ss_pred cCCCCcEEEEEEecCCCH
Q 000496 721 LGQTNKVMIFRLITRGSI 738 (1462)
Q Consensus 721 iGQ~k~V~VyrLvt~~Ti 738 (1462)
+|.+- +.|-.+-.+++.
T Consensus 430 FGkkG-~a~n~v~~~~s~ 446 (477)
T KOG0332|consen 430 FGKKG-LAINLVDDKDSM 446 (477)
T ss_pred ccccc-eEEEeecccCcH
Confidence 99664 333323334444
No 96
>PRK09694 helicase Cas3; Provisional
Probab=99.51 E-value=2e-12 Score=167.86 Aligned_cols=357 Identities=17% Similarity=0.164 Sum_probs=190.9
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC-CCcEEEEEcc-hhHHHHHHHHHH----HC
Q 000496 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPL-STLRNWEREFAT----WA 356 (1462)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~-~~p~LIVvP~-sll~qW~~E~~k----~~ 356 (1462)
+...+|+|....+-. ..++..||-..||.|||-.|+.++..+...+ ...++++.|. ++..+-...+.. .+
T Consensus 284 ~~~p~p~Q~~~~~~~----~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALP----LQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhc----cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 467999999764321 3466789999999999999999888776553 3488999997 555555555543 44
Q ss_pred CCCeEEEEEcChhHHHHHHHhhh-cCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc-----ccC--CCc
Q 000496 357 PQMNVVMYVGTSQARNIIREYEF-YFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-----SLK--PIK 428 (1462)
Q Consensus 357 P~l~vvvy~G~~~~R~~i~~~e~-~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~-----~L~--~i~ 428 (1462)
+..++...||...-........- ..........................-.+|+|+|.+.+....- .+. .+.
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 55678888876542211110000 0000000000000000000011111235899999988764211 111 122
Q ss_pred ceeEecccccccCCcchHHH-HHHHhcc--ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHH
Q 000496 429 WQCMIVDEGHRLKNKDSKLF-SSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (1462)
Q Consensus 429 w~~VIVDEAHrlKN~~Sk~~-~~l~~l~--~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i 505 (1462)
-.+|||||+|-+-...+.+. ..|+.+. ....++||||+-..-..+|...+. ...
T Consensus 440 ~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~---~~~-------------------- 496 (878)
T PRK09694 440 RSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYG---GHD-------------------- 496 (878)
T ss_pred cCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhc---ccc--------------------
Confidence 34899999998854433333 3333322 345799999972221111111100 000
Q ss_pred HHHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccc
Q 000496 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1462)
Q Consensus 506 ~~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L 585 (1462)
+. ......|-.... . . .... .+ .+..|+..
T Consensus 497 --------~~-------~~~~~YPlvt~~----~--~-------------------~~~~---------~~-~~~~~~~~ 526 (878)
T PRK09694 497 --------PV-------ELSSAYPLITWR----G--V-------------------NGAQ---------RF-DLSAHPEQ 526 (878)
T ss_pred --------cc-------cccccccccccc----c--c-------------------ccce---------ee-eccccccc
Confidence 00 000000000000 0 0 0000 00 00000000
Q ss_pred ccCCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcC---CeEEEEecCCCHHH
Q 000496 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK---WQYERIDGKVGGAE 662 (1462)
Q Consensus 586 ~~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~g---i~~~rIdGst~~~e 662 (1462)
.... ..+. ... ..+-.....-.++..++.. ...|.+||||++.+..+..+.+.|...+ +++..++|.++..+
T Consensus 527 ~~~~-~~v~-v~~--~~~~~~~~~~~~l~~i~~~-~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~d 601 (878)
T PRK09694 527 LPAR-FTIQ-LEP--ICLADMLPDLTLLQRMIAA-ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLND 601 (878)
T ss_pred cCcc-eEEE-EEe--eccccccCHHHHHHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Confidence 0000 0000 000 0000000112233333333 3568999999999999999999998764 68999999999999
Q ss_pred H----HHHHHHHhccCC-CCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCC
Q 000496 663 R----QIRIDRFNAKNS-SRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT 724 (1462)
Q Consensus 663 R----q~~Id~Fn~~~s-~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~ 724 (1462)
| +++++.|...+. ....+||+|.+...|||+ .+|.+|....+ ...++||+||+||.|.+
T Consensus 602 R~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 602 RREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred HHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 8 467888943222 223589999999999999 57988886555 56899999999999874
No 97
>PRK14701 reverse gyrase; Provisional
Probab=99.51 E-value=1.5e-12 Score=177.78 Aligned_cols=336 Identities=15% Similarity=0.232 Sum_probs=186.1
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCC----C
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP----Q 358 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P----~ 358 (1462)
.++++.|..++..+ ..+++.++..+||+|||...+.++..+ ......+|||+|+ +++.|....|..++. +
T Consensus 78 ~~pt~iQ~~~i~~i----l~G~d~li~APTGsGKTl~~~~~al~~-~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~ 152 (1638)
T PRK14701 78 FEFWSIQKTWAKRI----LRGKSFSIVAPTGMGKSTFGAFIALFL-ALKGKKCYIILPTTLLVKQTVEKIESFCEKANLD 152 (1638)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEEcCCCCHHHHHHHHHHHH-HhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCc
Confidence 45889999998766 568899999999999998433222222 2222379999997 777889999988764 3
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEeccccc
Q 000496 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1462)
Q Consensus 359 l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEAH 438 (1462)
.++..++|.....+.....+- .....++|+|+|.+.+......+....++++||||||
T Consensus 153 v~v~~~~g~~s~~e~~~~~~~----------------------l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD 210 (1638)
T PRK14701 153 VRLVYYHSNLRKKEKEEFLER----------------------IENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVD 210 (1638)
T ss_pred eeEEEEeCCCCHHHHHHHHHH----------------------HhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECce
Confidence 456777776544322111100 0123588999999988654433333568999999999
Q ss_pred ccCCcchHHHHHHHhccccceEeeccccccCCHH-HHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhhh
Q 000496 439 RLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLD-ELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1462)
Q Consensus 439 rlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~-EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~p~~L 517 (1462)
++-...-..-+.|. |-|- ...+. ..+.++.. ....+.. ...+.+..|...+.
T Consensus 211 ~ml~~~knid~~L~---------llGF--~~e~~~~~~~il~~---~~~~~~~---------~~~~~~~~l~~~~~---- 263 (1638)
T PRK14701 211 AFLKASKNIDRSLQ---------LLGF--YEEIIEKAWKIIYL---KKQGNIE---------DAMEKREILNKEIE---- 263 (1638)
T ss_pred eccccccccchhhh---------cCCC--hHHHHHHHHHhhhc---ccccccc---------hhhhhhhhhhhhhh----
Confidence 98531100001110 0010 00000 01111111 0000000 00122333333331
Q ss_pred hhhHhhHhhcCCCceeEEE--eecCCHHHHHHHHHHHHHHHHHHHhc-CCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000496 518 RRVKKDVMKELPPKKELIL--RVELSSKQKEYYKAILTRNYQILTRR-GGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1462)
Q Consensus 518 RR~K~dV~~~LPpk~e~iv--~v~ls~~Qk~~Y~~il~k~~~~l~~~-~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~ 594 (1462)
.+|......+ ...+++... ...++.. .+.-. +..... ++.+ .|.|..
T Consensus 264 ---------~~~~~~~~ll~~SAT~~~r~~--~~~l~~~---~l~f~v~~~~~~-------lr~i-~~~yi~-------- 313 (1638)
T PRK14701 264 ---------KIGNKIGCLIVASATGKAKGD--RVKLYRE---LLGFEVGSGRSA-------LRNI-VDVYLN-------- 313 (1638)
T ss_pred ---------hcCCCccEEEEEecCCCchhH--HHHHhhc---CeEEEecCCCCC-------CCCc-EEEEEE--------
Confidence 1222222222 223322100 0011000 00000 000000 0000 011100
Q ss_pred cchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhh---HHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHh
Q 000496 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM---LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1462)
Q Consensus 595 ~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~---ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn 671 (1462)
.....| ..|..++..+ |..+|||++.... ++.|..+|...|+++..++|. |..++++|.
T Consensus 314 ---------~~~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~ 375 (1638)
T PRK14701 314 ---------PEKIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFE 375 (1638)
T ss_pred ---------CCHHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHH
Confidence 001112 3455555543 6789999997664 589999999999999999984 899999998
Q ss_pred ccCCCCceEEeecc----ccccccCccc-CCEEEEecCCC---ChhhHHH-------------HHhhhhccCCC
Q 000496 672 AKNSSRFCFLLSTR----AGGLGINLAT-ADTVIIYDSDW---NPHADLQ-------------AMARAHRLGQT 724 (1462)
Q Consensus 672 ~~~s~~fvfLlSTr----agg~GINL~~-Ad~VIi~D~dW---NP~~d~Q-------------AigRahRiGQ~ 724 (1462)
++... +|++|. .+++|||++. ..+||+||.|- |...+.| .+||++|-|..
T Consensus 376 ~G~~~---VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 376 EGEID---YLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred cCCCC---EEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 75544 788884 7889999997 99999999986 5554444 45999998853
No 98
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.49 E-value=2.8e-12 Score=166.57 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=91.8
Q ss_pred cCCeEEEEecchhhHHHHHHHHHh---cCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEE
Q 000496 623 QGHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1462)
Q Consensus 623 ~g~KVLIFSq~~~~ldiLed~L~~---~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~V 699 (1462)
.+.++|||+......+.+...|.. .++.+..++|+++.++|..+++.|.. +...+|++|..+..||++..+++|
T Consensus 208 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~---G~rkVlVATnIAErgItIp~V~~V 284 (819)
T TIGR01970 208 ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQ---GRRKVVLATNIAETSLTIEGIRVV 284 (819)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhccc---CCeEEEEecchHhhcccccCceEE
Confidence 356899999999999999999976 47899999999999999999999854 344589999999999999999999
Q ss_pred EEecCC----CChhh--------------HHHHHhhhhccCCCCcEEEEEEecCC
Q 000496 700 IIYDSD----WNPHA--------------DLQAMARAHRLGQTNKVMIFRLITRG 736 (1462)
Q Consensus 700 Ii~D~d----WNP~~--------------d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1462)
|.++.. |||.. ..||.||++|. ++-.+|+|+++.
T Consensus 285 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 285 IDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred EEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHH
Confidence 999864 56655 67998988886 567789999864
No 99
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=1.3e-12 Score=165.81 Aligned_cols=119 Identities=17% Similarity=0.161 Sum_probs=102.5
Q ss_pred hchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeecc
Q 000496 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1462)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTr 685 (1462)
...|+..|.+.+....+.|..|||||..+...+.|...|...|+++..++|.....++..+...+ .++ .++|+|.
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag---~~g--~VtIATn 496 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAG---QRG--AVTIATN 496 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcC---CCc--eEEEEec
Confidence 35688999999998889999999999999999999999999999999999998755555554444 233 3799999
Q ss_pred ccccccCcc---cCC-----EEEEecCCCChhhHHHHHhhhhccCCCCcEEE
Q 000496 686 AGGLGINLA---TAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1462)
Q Consensus 686 agg~GINL~---~Ad-----~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~V 729 (1462)
.+|+|+++. .+. +||.++.+-|...+.|+.||++|.|..-....
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~ 548 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 548 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEE
Confidence 999999995 567 99999999999999999999999998876543
No 100
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.49 E-value=4.9e-13 Score=157.93 Aligned_cols=315 Identities=18% Similarity=0.245 Sum_probs=205.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHhCCCCcEEEEEcchhH-HHHHHHHHHHCCC--C
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQ--M 359 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~L~~~~~~p~LIVvP~sll-~qW~~E~~k~~P~--l 359 (1462)
.+|.|-|.-+|.- ..-.|.+-++...+++|||+++ +|-+..+... .+++|.+||+-.+ +|=.++|..-+.. +
T Consensus 215 ~eLlPVQ~laVe~---GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-g~KmlfLvPLVALANQKy~dF~~rYs~Lgl 290 (830)
T COG1202 215 EELLPVQVLAVEA---GLLEGENLLVVSATASGKTLIGELAGIPRLLSG-GKKMLFLVPLVALANQKYEDFKERYSKLGL 290 (830)
T ss_pred ceecchhhhhhhh---ccccCCceEEEeccCCCcchHHHhhCcHHHHhC-CCeEEEEehhHHhhcchHHHHHHHhhcccc
Confidence 4699999998843 2368999999999999999875 5555555443 3589999998555 4456677665533 3
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh---hcccCCCcceeEeccc
Q 000496 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SASLKPIKWQCMIVDE 436 (1462)
Q Consensus 360 ~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d---~~~L~~i~w~~VIVDE 436 (1462)
.+-+-.|...-+. . .+. .........||+|-||+-+.-- ...+. +...|||||
T Consensus 291 kvairVG~srIk~----~---------------~~p---v~~~t~~dADIIVGTYEGiD~lLRtg~~lg--diGtVVIDE 346 (830)
T COG1202 291 KVAIRVGMSRIKT----R---------------EEP---VVVDTSPDADIIVGTYEGIDYLLRTGKDLG--DIGTVVIDE 346 (830)
T ss_pred eEEEEechhhhcc----c---------------CCc---cccCCCCCCcEEEeechhHHHHHHcCCccc--ccceEEeee
Confidence 4444555432221 0 000 1112346789999999987332 23333 346899999
Q ss_pred ccccCCc--chH---HHHHHHhcc-ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHH
Q 000496 437 GHRLKNK--DSK---LFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1462)
Q Consensus 437 AHrlKN~--~Sk---~~~~l~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~ 510 (1462)
.|.|... ... +...|+.+. ....+.||||- .|+.||...|+.-
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA~~l~a~----------------------------- 395 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATV--GNPEELAKKLGAK----------------------------- 395 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeec--CChHHHHHHhCCe-----------------------------
Confidence 9999752 222 233333333 35678999995 5555555433210
Q ss_pred hhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCC
Q 000496 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1462)
Q Consensus 511 lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e 590 (1462)
| +.. ...--|...+.+++.=
T Consensus 396 -l----V~y-----~~RPVplErHlvf~~~-------------------------------------------------- 415 (830)
T COG1202 396 -L----VLY-----DERPVPLERHLVFARN-------------------------------------------------- 415 (830)
T ss_pred -e----Eee-----cCCCCChhHeeeeecC--------------------------------------------------
Confidence 0 000 0001122222222221
Q ss_pred CCcccchHHHHHHhhhchHHHHHHHHHHHHHH----cC--CeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHH
Q 000496 591 PDIEDTNESFKQLLESSGKLQLLDKMMVKLKE----QG--HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ 664 (1462)
Q Consensus 591 ~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~----~g--~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq 664 (1462)
.+.|..++.+|.+.-.. .| ..+|||+...+-...|.++|..+|++..-++++++..+|+
T Consensus 416 ---------------e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk 480 (830)
T COG1202 416 ---------------ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERK 480 (830)
T ss_pred ---------------chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHH
Confidence 12233333333332111 12 3699999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCceEEeeccccccccCcccCCEEEE----ecCC-CChhhHHHHHhhhhccCCCCcEEEEEEecCC
Q 000496 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YDSD-WNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1462)
Q Consensus 665 ~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi----~D~d-WNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1462)
.+-..|.+. ....+++|.|+|-|+++++. .||| +-.+ -+|+.+.|..|||+|.+=...-.||-++-.|
T Consensus 481 ~vE~~F~~q---~l~~VVTTAAL~AGVDFPAS-QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 481 SVERAFAAQ---ELAAVVTTAALAAGVDFPAS-QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHHHHHhcC---CcceEeehhhhhcCCCCchH-HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 999999764 44578999999999999854 4443 3334 4999999999999999988888888887654
No 101
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.48 E-value=2.9e-12 Score=163.24 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=105.4
Q ss_pred hchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeecc
Q 000496 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1462)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTr 685 (1462)
...|+..|.+.+.++...|..|||||..+...+.|...|...|+++..++|. ..+|+..|..|... ...++|+|.
T Consensus 412 ~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~---~g~VtIATN 486 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGR---PGAVTIATN 486 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCC---CceEEEecc
Confidence 4568999999999988999999999999999999999999999999999996 67899999999543 335899999
Q ss_pred ccccccCcccC--------------------------------------CEEEEecCCCChhhHHHHHhhhhccCCCCcE
Q 000496 686 AGGLGINLATA--------------------------------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (1462)
Q Consensus 686 agg~GINL~~A--------------------------------------d~VIi~D~dWNP~~d~QAigRahRiGQ~k~V 727 (1462)
.+|+|+|+.-. =+||.-..+=|-..+.|..||++|.|..-..
T Consensus 487 mAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss 566 (830)
T PRK12904 487 MAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 566 (830)
T ss_pred cccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCce
Confidence 99999998643 2788888899999999999999999998766
Q ss_pred EEE
Q 000496 728 MIF 730 (1462)
Q Consensus 728 ~Vy 730 (1462)
..|
T Consensus 567 ~f~ 569 (830)
T PRK12904 567 RFY 569 (830)
T ss_pred eEE
Confidence 654
No 102
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.48 E-value=6.1e-13 Score=156.72 Aligned_cols=361 Identities=19% Similarity=0.275 Sum_probs=216.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHH-HHHHHHHHHh-------------CCCCc-EEEEEcc-hhHHH
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFG-------------ERISP-HLVVAPL-STLRN 347 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiq-aIa~l~~L~~-------------~~~~p-~LIVvP~-sll~q 347 (1462)
|-.+|-+++++..- .........|=|.|+|+|||+. +|-++..+.+ .++.| .|||+|+ .+..|
T Consensus 200 gFs~Pt~IQsl~lp-~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~Q 278 (731)
T KOG0347|consen 200 GFSRPTEIQSLVLP-AAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQ 278 (731)
T ss_pred CCCCCccchhhccc-HhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHH
Confidence 44555555554311 1112335677799999999987 4555653321 12222 6999997 67788
Q ss_pred HHHHHHHHC--CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh----hh
Q 000496 348 WEREFATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----DS 421 (1462)
Q Consensus 348 W~~E~~k~~--P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~----d~ 421 (1462)
-...|...+ +++.+..+.|+-.....-+-. ....+|||.|...+.. +.
T Consensus 279 V~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL--------------------------~~~p~IVVATPGRlweli~e~n 332 (731)
T KOG0347|consen 279 VKQHLKAIAEKTQIRVASITGGLAVQKQQRLL--------------------------NQRPDIVVATPGRLWELIEEDN 332 (731)
T ss_pred HHHHHHHhccccCeEEEEeechhHHHHHHHHH--------------------------hcCCCEEEecchHHHHHHHhhh
Confidence 888887765 567888888886654432221 1257899999887633 22
Q ss_pred cccCCC-cceeEeccccccc--CCcchHHHHHHHhcc------ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHH
Q 000496 422 ASLKPI-KWQCMIVDEGHRL--KNKDSKLFSSLKQYS------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEF 492 (1462)
Q Consensus 422 ~~L~~i-~w~~VIVDEAHrl--KN~~Sk~~~~l~~l~------~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F 492 (1462)
..+..+ +..|+|||||.|+ +++-..+.+.|..+. -+..++.|||-- +.++.. ...
T Consensus 333 ~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt---------~~~~~~------~~~- 396 (731)
T KOG0347|consen 333 THLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLT---------LVLQQP------LSS- 396 (731)
T ss_pred hhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEee---------hhhcCh------hHH-
Confidence 234443 3579999999998 444445555555553 123477888831 111000 000
Q ss_pred HHHHhhhhhHHHHHHHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHH
Q 000496 493 QEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINV 572 (1462)
Q Consensus 493 ~e~f~~~~~~~~i~~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~ni 572 (1462)
..-........-+.+..+++. +.-.-+| ..+++++.+... ..
T Consensus 397 -~~k~~~k~~~~~~kiq~Lmk~---------ig~~~kp-----kiiD~t~q~~ta-----------------------~~ 438 (731)
T KOG0347|consen 397 -SRKKKDKEDELNAKIQHLMKK---------IGFRGKP-----KIIDLTPQSATA-----------------------ST 438 (731)
T ss_pred -hhhccchhhhhhHHHHHHHHH---------hCccCCC-----eeEecCcchhHH-----------------------HH
Confidence 000000000111112222211 1111112 234444433221 11
Q ss_pred HHHHHHHhCCcccccCCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEE
Q 000496 573 VMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYE 652 (1462)
Q Consensus 573 l~~LRk~c~hP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~ 652 (1462)
+.+-+--| .| +-. +.. |.-+|. .--.|.||||+.++....|.-+|...+++..
T Consensus 439 l~Es~I~C-~~-~eK----D~y------------------lyYfl~---ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~ 491 (731)
T KOG0347|consen 439 LTESLIEC-PP-LEK----DLY------------------LYYFLT---RYPGRTLVFCNSIDCVKRLTVLLNNLDIPPL 491 (731)
T ss_pred HHHHhhcC-Cc-ccc----cee------------------EEEEEe---ecCCceEEEechHHHHHHHHHHHhhcCCCCc
Confidence 22222223 11 000 000 000000 1124899999999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEE
Q 000496 653 RIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRL 732 (1462)
Q Consensus 653 rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrL 732 (1462)
.++.+|.+.+|-+.+++|....++ +||+|.+++.||+++.++|||+|.-+-....|+.|-||.-|-+..- |.|. |
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~---VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~G-vsvm-l 566 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSG---VLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEG-VSVM-L 566 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCe---EEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCC-eEEE-E
Confidence 999999999999999999876555 8999999999999999999999999999999999999999976542 2221 2
Q ss_pred ecC---------------------CCHHHHHHHHHHHHHHHHHHHh
Q 000496 733 ITR---------------------GSIEERMMQMTKKKMVLEHLVV 757 (1462)
Q Consensus 733 vt~---------------------~TiEE~I~e~~~kK~~L~~~Vi 757 (1462)
+.. --|++.|+..++.+-+|++.+.
T Consensus 567 ~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei~ 612 (731)
T KOG0347|consen 567 CGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREID 612 (731)
T ss_pred eChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHHH
Confidence 211 1346677777777766666553
No 103
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.48 E-value=1.2e-12 Score=168.28 Aligned_cols=310 Identities=22% Similarity=0.240 Sum_probs=190.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHC-CCCeEE
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQMNVV 362 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~-P~l~vv 362 (1462)
+|+|.|.+++--.. ..+.|+|++..||+|||+.|...+..-..++.++++.|||. ++..+=.++|.+|. -+++|.
T Consensus 31 el~~~qq~av~~~~---~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~ 107 (766)
T COG1204 31 ELFNPQQEAVEKGL---LSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVG 107 (766)
T ss_pred HhhHHHHHHhhccc---cCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEE
Confidence 79999999984332 33899999999999999999877776666656799999996 77778888888443 278999
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc--ccCCCcceeEeccccccc
Q 000496 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDEGHRL 440 (1462)
Q Consensus 363 vy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~--~L~~i~w~~VIVDEAHrl 440 (1462)
+++|+.+... .....++|+|||||.+-.-.. ..--...++|||||+|-+
T Consensus 108 ~~TgD~~~~~-----------------------------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l 158 (766)
T COG1204 108 ISTGDYDLDD-----------------------------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLL 158 (766)
T ss_pred EecCCcccch-----------------------------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeec
Confidence 9999876432 123578999999998843211 111224579999999999
Q ss_pred CCcc-hH----HHHHHHhccc-cceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhch
Q 000496 441 KNKD-SK----LFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1462)
Q Consensus 441 KN~~-Sk----~~~~l~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~p 514 (1462)
.... .. +...++.+.. -..++||||- .|..|+.. ||+...+.+ ..+|
T Consensus 159 ~d~~RG~~lE~iv~r~~~~~~~~rivgLSATl--pN~~evA~---wL~a~~~~~----------------------~~rp 211 (766)
T COG1204 159 GDRTRGPVLESIVARMRRLNELIRIVGLSATL--PNAEEVAD---WLNAKLVES----------------------DWRP 211 (766)
T ss_pred CCcccCceehhHHHHHHhhCcceEEEEEeeec--CCHHHHHH---HhCCccccc----------------------CCCC
Confidence 7651 11 1122222233 3567899994 34444333 222221110 1111
Q ss_pred hhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000496 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1462)
Q Consensus 515 ~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~ 594 (1462)
.-++| ..|.. ....... +..
T Consensus 212 ~~l~~-------~v~~~-~~~~~~~-----------------------~~~----------------------------- 231 (766)
T COG1204 212 VPLRR-------GVPYV-GAFLGAD-----------------------GKK----------------------------- 231 (766)
T ss_pred ccccc-------CCccc-eEEEEec-----------------------Ccc-----------------------------
Confidence 11111 00000 0000000 000
Q ss_pred cchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHh----c---------C-------------
Q 000496 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----K---------K------------- 648 (1462)
Q Consensus 595 ~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~----~---------g------------- 648 (1462)
+ .....+...+..++....+.|..||||++...........|.. . .
T Consensus 232 ------k--~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 303 (766)
T COG1204 232 ------K--TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPT 303 (766)
T ss_pred ------c--cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccc
Confidence 0 0011122334444555566788899998887654444444431 0 0
Q ss_pred -----------CeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEE-----ec-----CCCC
Q 000496 649 -----------WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-----YD-----SDWN 707 (1462)
Q Consensus 649 -----------i~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi-----~D-----~dWN 707 (1462)
..+..-+.+++.++|+-+-+.|++ +.+-+|++|-.++.|+||++ ++||| || -+-+
T Consensus 304 ~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~---g~ikVlv~TpTLA~GVNLPA-~~VIIk~~~~y~~~~g~~~i~ 379 (766)
T COG1204 304 SEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRK---GKIKVLVSTPTLAAGVNLPA-RTVIIKDTRRYDPKGGIVDIP 379 (766)
T ss_pred cchHHHHHHHHhCccccccCCCHHHHHHHHHHHhc---CCceEEEechHHhhhcCCcc-eEEEEeeeEEEcCCCCeEECc
Confidence 112334566788899999999976 55669999999999999985 44444 45 3346
Q ss_pred hhhHHHHHhhhhccCCCC
Q 000496 708 PHADLQAMARAHRLGQTN 725 (1462)
Q Consensus 708 P~~d~QAigRahRiGQ~k 725 (1462)
+...+|.+|||+|.|=..
T Consensus 380 ~~dv~QM~GRAGRPg~d~ 397 (766)
T COG1204 380 VLDVLQMAGRAGRPGYDD 397 (766)
T ss_pred hhhHhhccCcCCCCCcCC
Confidence 788899999999998553
No 104
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.47 E-value=1.6e-13 Score=152.50 Aligned_cols=302 Identities=18% Similarity=0.224 Sum_probs=196.1
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHhCCCC-cEEEEEcchh----HHHHHHHHHHHCCCC
Q 000496 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERIS-PHLVVAPLST----LRNWEREFATWAPQM 359 (1462)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~L~~~~~~-p~LIVvP~sl----l~qW~~E~~k~~P~l 359 (1462)
..|.|.+++--. -.|++.+.-.--|+|||-.- |-.+..+-..... ..+|+||..- .+|-..++.++. ++
T Consensus 108 PSPiQeesIPia----LtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~-~i 182 (459)
T KOG0326|consen 108 PSPIQEESIPIA----LTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHL-GI 182 (459)
T ss_pred CCCcccccccee----ecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhccc-Ce
Confidence 444555554322 23444444566799999653 3333333222222 7899999632 366788888888 58
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hcccCCCcceeEecccc
Q 000496 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEG 437 (1462)
Q Consensus 360 ~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d--~~~L~~i~w~~VIVDEA 437 (1462)
.+++-.|...-|..|... ....|++|.|...+..- +..-.--+...+|+|||
T Consensus 183 ~vmvttGGT~lrDDI~Rl--------------------------~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 183 KVMVTTGGTSLRDDIMRL--------------------------NQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA 236 (459)
T ss_pred EEEEecCCcccccceeee--------------------------cCceEEEEcCChhHHHHHhcccccchhceEEEechh
Confidence 888888887666533221 13568999999887542 11112224568999999
Q ss_pred cccCCcch--HHHHHHHhcc-ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhch
Q 000496 438 HRLKNKDS--KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1462)
Q Consensus 438 HrlKN~~S--k~~~~l~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~p 514 (1462)
..+.+..- .+-+.+.-+. .+..+|.|||- .. ....|...|- -+|
T Consensus 237 DKlLs~~F~~~~e~li~~lP~~rQillySATF-P~------------------tVk~Fm~~~l--------------~kP 283 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLPKERQILLYSATF-PL------------------TVKGFMDRHL--------------KKP 283 (459)
T ss_pred hhhhchhhhhHHHHHHHhCCccceeeEEeccc-ch------------------hHHHHHHHhc--------------cCc
Confidence 99876432 2333333343 34456677772 00 1112222211 011
Q ss_pred hhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000496 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1462)
Q Consensus 515 ~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~ 594 (1462)
|.+ .+.-+|+..-.
T Consensus 284 y~I-----------------NLM~eLtl~Gv------------------------------------------------- 297 (459)
T KOG0326|consen 284 YEI-----------------NLMEELTLKGV------------------------------------------------- 297 (459)
T ss_pred cee-----------------ehhhhhhhcch-------------------------------------------------
Confidence 111 11111111000
Q ss_pred cchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccC
Q 000496 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (1462)
Q Consensus 595 ~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~ 674 (1462)
..+-..+..+.|+.-|.-|+.+|. =...||||+.+...++|+..+...||+...|+..|..+.|.....+|.++.
T Consensus 298 ---tQyYafV~e~qKvhCLntLfskLq--INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~ 372 (459)
T KOG0326|consen 298 ---TQYYAFVEERQKVHCLNTLFSKLQ--INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGK 372 (459)
T ss_pred ---hhheeeechhhhhhhHHHHHHHhc--ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccc
Confidence 011223344556666777777664 236899999999999999999999999999999999999999999997643
Q ss_pred CCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCC
Q 000496 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1462)
Q Consensus 675 s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k 725 (1462)
- ..|++|...-.||++++++.||.||.+-|+..|+.++||.+|.|---
T Consensus 373 c---rnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG 420 (459)
T KOG0326|consen 373 C---RNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG 420 (459)
T ss_pred c---ceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc
Confidence 3 37999999999999999999999999999999999999999999653
No 105
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.45 E-value=5.1e-11 Score=134.48 Aligned_cols=312 Identities=19% Similarity=0.214 Sum_probs=208.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCCCC
Q 000496 281 LSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM 359 (1462)
Q Consensus 281 ~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l 359 (1462)
..+|+|.|+|..+-+-+...+.+....|+-.-+|.|||=+....+...++.+ +.+.|..|. .++-.-..-++.-+++.
T Consensus 93 ~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G-~~vciASPRvDVclEl~~Rlk~aF~~~ 171 (441)
T COG4098 93 QWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG-GRVCIASPRVDVCLELYPRLKQAFSNC 171 (441)
T ss_pred eeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC-CeEEEecCcccchHHHHHHHHHhhccC
Confidence 4579999999999999999999999999999999999988877777766654 488999995 66666667777778888
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEecccccc
Q 000496 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHR 439 (1462)
Q Consensus 360 ~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEAHr 439 (1462)
.+...+|+....- -..=||-||++.++- . -.||++||||+.-
T Consensus 172 ~I~~Lyg~S~~~f--------------------------------r~plvVaTtHQLlrF-k-----~aFD~liIDEVDA 213 (441)
T COG4098 172 DIDLLYGDSDSYF--------------------------------RAPLVVATTHQLLRF-K-----QAFDLLIIDEVDA 213 (441)
T ss_pred CeeeEecCCchhc--------------------------------cccEEEEehHHHHHH-H-----hhccEEEEecccc
Confidence 8999998875421 112256666666642 2 2479999999998
Q ss_pred cC-CcchHHHHHHHhcc--ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchh-
Q 000496 440 LK-NKDSKLFSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPH- 515 (1462)
Q Consensus 440 lK-N~~Sk~~~~l~~l~--~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~p~- 515 (1462)
+- ..+-.+..+++... ....+.|||||-. +|- + +-++.-+.+.
T Consensus 214 FP~~~d~~L~~Av~~ark~~g~~IylTATp~k----~l~------------------r-----------~~~~g~~~~~k 260 (441)
T COG4098 214 FPFSDDQSLQYAVKKARKKEGATIYLTATPTK----KLE------------------R-----------KILKGNLRILK 260 (441)
T ss_pred ccccCCHHHHHHHHHhhcccCceEEEecCChH----HHH------------------H-----------HhhhCCeeEee
Confidence 74 23334555555543 3467999999911 000 0 0011111111
Q ss_pred hhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCccc
Q 000496 516 LLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (1462)
Q Consensus 516 ~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~~ 595 (1462)
+-+|... +.||-.+...+ . .. .
T Consensus 261 lp~RfH~---~pLpvPkf~w~--~--~~----~----------------------------------------------- 282 (441)
T COG4098 261 LPARFHG---KPLPVPKFVWI--G--NW----N----------------------------------------------- 282 (441)
T ss_pred cchhhcC---CCCCCCceEEe--c--cH----H-----------------------------------------------
Confidence 1112111 12332222111 1 00 0
Q ss_pred chHHHHHHhhhchHHH-HHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEec-CCCHHHHHHHHHHHhcc
Q 000496 596 TNESFKQLLESSGKLQ-LLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDG-KVGGAERQIRIDRFNAK 673 (1462)
Q Consensus 596 ~~~~~~~li~~SgKl~-~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdG-st~~~eRq~~Id~Fn~~ 673 (1462)
+.+ .-+|+. .|...|++....|..+|||...+.+++-+...|+ .++++..|.. ......|.+.+..|.+
T Consensus 283 -----k~l--~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk-~~~~~~~i~~Vhs~d~~R~EkV~~fR~- 353 (441)
T COG4098 283 -----KKL--QRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALK-KKLPKETIASVHSEDQHRKEKVEAFRD- 353 (441)
T ss_pred -----HHh--hhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHH-hhCCccceeeeeccCccHHHHHHHHHc-
Confidence 000 011222 3566777778889999999999999999999885 2444444332 1223678999999976
Q ss_pred CCCCceEEeeccccccccCcccCCEEEEecCC--CChhhHHHHHhhhhccCCCCcEEEEEEe
Q 000496 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSD--WNPHADLQAMARAHRLGQTNKVMIFRLI 733 (1462)
Q Consensus 674 ~s~~fvfLlSTragg~GINL~~Ad~VIi~D~d--WNP~~d~QAigRahRiGQ~k~V~VyrLv 733 (1462)
+.+-+|++|..+..|+.++..|++++=.-. ++-+..+|.-||++|--..-.-.|+.|-
T Consensus 354 --G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 354 --GKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred --CceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 455699999999999999999999987665 8999999999999996554433444443
No 106
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=3.7e-12 Score=161.84 Aligned_cols=120 Identities=19% Similarity=0.204 Sum_probs=106.7
Q ss_pred hchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeecc
Q 000496 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1462)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTr 685 (1462)
...|+..+.+-+..+.+.|..|||||..+...+.|..+|...|+++..+++.....+|..+.+.|+.+. ++|+|.
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-----VtIATn 505 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-----VTIATN 505 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-----EEEecC
Confidence 467889999999999999999999999999999999999999999999999999999999999886532 799999
Q ss_pred ccccccCcccC-------------------------------------CEEEEecCCCChhhHHHHHhhhhccCCCCcEE
Q 000496 686 AGGLGINLATA-------------------------------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1462)
Q Consensus 686 agg~GINL~~A-------------------------------------d~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~ 728 (1462)
.+|.|+|+.-. =+||.-..+=|-..+.|..||++|.|..-...
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 99999998622 27899999999999999999999999886555
Q ss_pred EE
Q 000496 729 IF 730 (1462)
Q Consensus 729 Vy 730 (1462)
.|
T Consensus 586 f~ 587 (908)
T PRK13107 586 FY 587 (908)
T ss_pred EE
Confidence 44
No 107
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.45 E-value=6.8e-12 Score=144.90 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=100.8
Q ss_pred chHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeecc-
Q 000496 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR- 685 (1462)
Q Consensus 607 SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTr- 685 (1462)
..|+.++.-||+--. -..|.|||.+.++..-.|.-+|+.-|++.|.+.|.++..-|.-+|++||.+ .+-++|+|.
T Consensus 252 ~DKflllyallKL~L-I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG---~YdivIAtD~ 327 (569)
T KOG0346|consen 252 EDKFLLLYALLKLRL-IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKG---LYDIVIATDD 327 (569)
T ss_pred chhHHHHHHHHHHHH-hcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCc---ceeEEEEccC
Confidence 346666666665322 234899999999999999999999999999999999999999999999873 344677776
Q ss_pred -------------------------c---------cccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEE
Q 000496 686 -------------------------A---------GGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (1462)
Q Consensus 686 -------------------------a---------gg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~Vyr 731 (1462)
+ .+.||+++.++.||.||.+-++..|+.|+||..|-|.+-.+.-|-
T Consensus 328 s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv 407 (569)
T KOG0346|consen 328 SADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFV 407 (569)
T ss_pred ccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEe
Confidence 1 257999999999999999999999999999999988776665543
Q ss_pred E
Q 000496 732 L 732 (1462)
Q Consensus 732 L 732 (1462)
.
T Consensus 408 ~ 408 (569)
T KOG0346|consen 408 S 408 (569)
T ss_pred c
Confidence 3
No 108
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=99.43 E-value=4.2e-15 Score=148.20 Aligned_cols=100 Identities=25% Similarity=0.346 Sum_probs=79.4
Q ss_pred CCCccCCCCcCccchHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCCCCccCHHHHHHHHHHHHhhcc--
Q 000496 1024 SPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKHGY-- 1101 (1462)
Q Consensus 1024 ~e~~~d~i~k~~~k~~~vl~Ri~~~~ll~~Kv~~~~~~p~~~~~~~~l~~~y~~~~~~~~w~~eeDr~LL~~i~k~Gy-- 1101 (1462)
|++++..|++|+.|++.. ...+.+|++||+.|. +| + .+|.++||++++++.|+++|||||||++|+|||
T Consensus 1 ~ek~i~~IE~gE~k~~k~---~~~~~~l~~Kv~~~~-~P---~--~~L~i~y~~~~~~k~yseeEDRfLl~~~~~~G~~~ 71 (118)
T PF09111_consen 1 WEKIIKRIEKGEKKIEKR---KEQQEALRKKVEQYK-NP---W--QELKINYPPNNKKKVYSEEEDRFLLCMLYKYGYDA 71 (118)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCC-S-SH---H--HH---SSTSTSS-SSS-HHHHHHHHHHHHHHTTTS
T ss_pred ChHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcc-CC---H--HHCeeccCCCCCCCCcCcHHHHHHHHHHHHhCCCC
Confidence 356677888888877664 456799999999997 67 5 678999998888999999999999999999999
Q ss_pred -chhHHhhhCc--------ccChHHHHHHHhcCCCCCCCC
Q 000496 1102 -GRWQAIVDDK--------DLKVQEVICQELNLPFINLPV 1132 (1462)
Q Consensus 1102 -g~We~Ik~D~--------~l~l~~~i~~e~~~~~~~~~~ 1132 (1462)
|.||.|+++. +|+|.++..+|++.||.+|+.
T Consensus 72 ~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~ 111 (118)
T PF09111_consen 72 EGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIK 111 (118)
T ss_dssp TTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHH
Confidence 9999988887 899999999999999988753
No 109
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.43 E-value=2.4e-13 Score=126.62 Aligned_cols=78 Identities=35% Similarity=0.570 Sum_probs=73.6
Q ss_pred HHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhcc
Q 000496 642 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1462)
Q Consensus 642 d~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRi 721 (1462)
.+|+..|+++..++|.++..+|+.+++.|+.... .+|++|.++++|||++.+++||+++++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI---RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS---SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc---eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 3688999999999999999999999999987655 4899999999999999999999999999999999999999998
Q ss_pred C
Q 000496 722 G 722 (1462)
Q Consensus 722 G 722 (1462)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
No 110
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.42 E-value=8.8e-12 Score=162.34 Aligned_cols=110 Identities=17% Similarity=0.175 Sum_probs=91.8
Q ss_pred cCCeEEEEecchhhHHHHHHHHHh---cCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEE
Q 000496 623 QGHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1462)
Q Consensus 623 ~g~KVLIFSq~~~~ldiLed~L~~---~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~V 699 (1462)
.+..+|||+.....++.+.+.|.. .++.+..++|+++..+|+.++..|.. +...+|++|..+..||++..+++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~---G~rkVlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA---GRRKVVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC---CCeEEEEecchHHhcccccCceEE
Confidence 357899999999999999999976 57889999999999999999988853 445689999999999999999999
Q ss_pred EEecCC----CChh--------------hHHHHHhhhhccCCCCcEEEEEEecCCCH
Q 000496 700 IIYDSD----WNPH--------------ADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (1462)
Q Consensus 700 Ii~D~d----WNP~--------------~d~QAigRahRiGQ~k~V~VyrLvt~~Ti 738 (1462)
|.++.. |+|. ...||.||++|. .+-.+|+|+++...
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 996654 3333 578888888886 47889999987644
No 111
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.41 E-value=3.4e-12 Score=137.53 Aligned_cols=156 Identities=28% Similarity=0.352 Sum_probs=110.7
Q ss_pred CCCCCHHHHHHHHHHHHhhccC-CcEEEEecCCCchHHHHHHHHHHHHhCC-CCcEEEEEc-chhHHHHHHHHHHHCCCC
Q 000496 283 GGSLHPYQLEGLNFLRFSWSKQ-THVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWEREFATWAPQM 359 (1462)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~-~~~ILADemGLGKTiqaIa~l~~L~~~~-~~p~LIVvP-~sll~qW~~E~~k~~P~l 359 (1462)
..++++||.+++..+ ... .++++..++|+|||..++.++....... ..++||++| .++..+|..++..+.+..
T Consensus 6 ~~~~~~~Q~~~~~~~----~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEAL----LSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHH----HcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 367999999999877 344 8999999999999998777777665543 459999999 577899999999988662
Q ss_pred ---eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcc--cCCCcceeEec
Q 000496 360 ---NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIV 434 (1462)
Q Consensus 360 ---~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~--L~~i~w~~VIV 434 (1462)
....+.+... ...+... .....+++++|++.+...... +....|+++||
T Consensus 82 ~~~~~~~~~~~~~-~~~~~~~-------------------------~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIi 135 (201)
T smart00487 82 GLKVVGLYGGDSK-REQLRKL-------------------------ESGKTDILVTTPGRLLDLLENDLLELSNVDLVIL 135 (201)
T ss_pred CeEEEEEeCCcch-HHHHHHH-------------------------hcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEE
Confidence 2334444332 2221111 012238999999998776544 44557889999
Q ss_pred ccccccCC-cch-HHHHHHHhc-cccceEeecccccc
Q 000496 435 DEGHRLKN-KDS-KLFSSLKQY-STRHRVLLTGTPLQ 468 (1462)
Q Consensus 435 DEAHrlKN-~~S-k~~~~l~~l-~~~~rLLLTGTPlq 468 (1462)
||+|.+.+ ... .....+..+ ...+++++||||..
T Consensus 136 DE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~ 172 (201)
T smart00487 136 DEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPE 172 (201)
T ss_pred ECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCch
Confidence 99999985 333 333344444 46788999999963
No 112
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.40 E-value=7.2e-11 Score=152.34 Aligned_cols=322 Identities=17% Similarity=0.218 Sum_probs=214.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCCc--EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHH-HHHHHHHCCCCe
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTH--VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW-EREFATWAPQMN 360 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~--~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW-~~E~~k~~P~l~ 360 (1462)
.+-.|-|+.+++-+..-...++- -+||-++|.|||=.|+=.+-..... .+.+.|+||+.+|.+. .+.|+.-+-++.
T Consensus 593 yeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~-GKQVAvLVPTTlLA~QHy~tFkeRF~~fP 671 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD-GKQVAVLVPTTLLAQQHYETFKERFAGFP 671 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC-CCeEEEEcccHHhHHHHHHHHHHHhcCCC
Confidence 56778999999988766666553 5999999999998876333222222 2589999999888653 444554444555
Q ss_pred EEE-----EEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEecc
Q 000496 361 VVM-----YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1462)
Q Consensus 361 vvv-----y~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVD 435 (1462)
|-+ |.+.++.+..+... ..++.||||-|+..+.++..+- +-.+||||
T Consensus 672 V~I~~LSRF~s~kE~~~il~~l-------------------------a~G~vDIvIGTHrLL~kdv~Fk---dLGLlIID 723 (1139)
T COG1197 672 VRIEVLSRFRSAKEQKEILKGL-------------------------AEGKVDIVIGTHRLLSKDVKFK---DLGLLIID 723 (1139)
T ss_pred eeEEEecccCCHHHHHHHHHHH-------------------------hcCCccEEEechHhhCCCcEEe---cCCeEEEe
Confidence 443 23333333333322 2468899999999998765543 34699999
Q ss_pred cccccCCcchHHHHHHHhcccc-ceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhch
Q 000496 436 EGHRLKNKDSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1462)
Q Consensus 436 EAHrlKN~~Sk~~~~l~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~p 514 (1462)
|=||+.= +.-..|+.++++ +.|-|||||+.-.+.= .+ . .+..|
T Consensus 724 EEqRFGV---k~KEkLK~Lr~~VDvLTLSATPIPRTL~M-----sm--~--------------------GiRdl------ 767 (1139)
T COG1197 724 EEQRFGV---KHKEKLKELRANVDVLTLSATPIPRTLNM-----SL--S--------------------GIRDL------ 767 (1139)
T ss_pred chhhcCc---cHHHHHHHHhccCcEEEeeCCCCcchHHH-----HH--h--------------------cchhh------
Confidence 9999853 334556666554 7888999998876421 00 0 00000
Q ss_pred hhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000496 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1462)
Q Consensus 515 ~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~ 594 (1462)
..-.-||.....|.--..+..-.
T Consensus 768 ---------SvI~TPP~~R~pV~T~V~~~d~~------------------------------------------------ 790 (1139)
T COG1197 768 ---------SVIATPPEDRLPVKTFVSEYDDL------------------------------------------------ 790 (1139)
T ss_pred ---------hhccCCCCCCcceEEEEecCChH------------------------------------------------
Confidence 01134565554443322221111
Q ss_pred cchHHHHHHhhhchHHHHHHH-HHHHHHHcCCeEEEEecchhhHHHHHHHHHhc--CCeEEEEecCCCHHHHHHHHHHHh
Q 000496 595 DTNESFKQLLESSGKLQLLDK-MMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFN 671 (1462)
Q Consensus 595 ~~~~~~~~li~~SgKl~~L~k-lL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~--gi~~~rIdGst~~~eRq~~Id~Fn 671 (1462)
++.+ ++++ ..+|..|-...+.+..+.-+...|+.. ..++...+|.|+..+-+.++..|.
T Consensus 791 -----------------~ireAI~RE-l~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~ 852 (1139)
T COG1197 791 -----------------LIREAILRE-LLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFY 852 (1139)
T ss_pred -----------------HHHHHHHHH-HhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHH
Confidence 1111 2233 345677877788888888888888764 567899999999999999999998
Q ss_pred ccCCCCceEEeeccccccccCcccCCEEEEecCC-CChhhHHHHHhhhhccCCCCcEEEEEEecCCCHHHHHHHHHHHHH
Q 000496 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKM 750 (1462)
Q Consensus 672 ~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~d-WNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~~~kK~ 750 (1462)
++.- -+|+||.....|||+++|||+||-+.| +--++.-|-.||++|- .+.-+.|.|+-.+ ..+-+.+.+++
T Consensus 853 ~g~~---dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS--~~~AYAYfl~p~~---k~lT~~A~kRL 924 (1139)
T COG1197 853 NGEY---DVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRS--NKQAYAYFLYPPQ---KALTEDAEKRL 924 (1139)
T ss_pred cCCC---CEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCc--cceEEEEEeecCc---cccCHHHHHHH
Confidence 7554 489999999999999999999999887 6788889999999994 4456777776542 22344455544
Q ss_pred HHH
Q 000496 751 VLE 753 (1462)
Q Consensus 751 ~L~ 753 (1462)
...
T Consensus 925 ~aI 927 (1139)
T COG1197 925 EAI 927 (1139)
T ss_pred HHH
Confidence 433
No 113
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.39 E-value=8.5e-12 Score=157.97 Aligned_cols=123 Identities=20% Similarity=0.253 Sum_probs=108.2
Q ss_pred chHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccc
Q 000496 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1462)
Q Consensus 607 SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTra 686 (1462)
+.|+.-|..||....+ ..++|||++....+|.|.+-|...||....++|..+..+|...|.+|.+. .+.+|+.|..
T Consensus 597 ~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~---~~~LLvaTsv 672 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNG---VVNLLVATSV 672 (997)
T ss_pred hHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhcc---CceEEEehhh
Confidence 4577788888887766 66999999999999999999999999999999999999999999999764 4459999999
Q ss_pred cccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecC
Q 000496 687 GGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1462)
Q Consensus 687 gg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~ 735 (1462)
.+.||++.....||+||.+--...+..|.||.+|.|.+- .-|-|++.
T Consensus 673 varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 673 VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 999999999999999999988888999999999988877 44455555
No 114
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.38 E-value=1.5e-11 Score=147.59 Aligned_cols=122 Identities=23% Similarity=0.329 Sum_probs=104.5
Q ss_pred chHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHH-HhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeecc
Q 000496 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL-TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1462)
Q Consensus 607 SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L-~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTr 685 (1462)
-+|+..+..++.... .-.+|||.|...-...|-..| ...++.+..|+|..+..+|.+.+++|.. +.+-+|++|.
T Consensus 372 ~~K~lA~rq~v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~---g~IwvLicTd 446 (593)
T KOG0344|consen 372 KGKLLALRQLVASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI---GKIWVLICTD 446 (593)
T ss_pred hhHHHHHHHHHhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc---cCeeEEEehh
Confidence 467777777776643 358999999999999998999 7889999999999999999999999975 4456899999
Q ss_pred ccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecC
Q 000496 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1462)
Q Consensus 686 agg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~ 735 (1462)
..+.||++..++.||+||.+-.-..++.++||.+|-|+.-.. |-|+++
T Consensus 447 ll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~A--itfytd 494 (593)
T KOG0344|consen 447 LLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKA--ITFYTD 494 (593)
T ss_pred hhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcce--EEEecc
Confidence 999999999999999999999999999999999999987543 334444
No 115
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.36 E-value=5.9e-12 Score=127.67 Aligned_cols=136 Identities=25% Similarity=0.295 Sum_probs=99.1
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhC-CCCcEEEEEcchhHH-HHHHHHHHHCC-CCeEEEEEcChhHHHHHHHhhhcC
Q 000496 305 THVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTLR-NWEREFATWAP-QMNVVMYVGTSQARNIIREYEFYF 381 (1462)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L~~~-~~~p~LIVvP~sll~-qW~~E~~k~~P-~l~vvvy~G~~~~R~~i~~~e~~~ 381 (1462)
.++++..++|+|||.+++.++..+... ..+++||++|...+. +|...+..+.. ...+.++.+..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKL----- 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHH-----
Confidence 368999999999999999999988765 445999999986555 55666777775 4667667665544332211
Q ss_pred CCCchhhhccccCccccccccccccccEEEecHHHHHhhhccc--CCCcceeEecccccccCCcchHHH---HHHHhccc
Q 000496 382 PKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASL--KPIKWQCMIVDEGHRLKNKDSKLF---SSLKQYST 456 (1462)
Q Consensus 382 ~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L--~~i~w~~VIVDEAHrlKN~~Sk~~---~~l~~l~~ 456 (1462)
.....+++++||+.+....... ..-.|++|||||+|.+.+...... ........
T Consensus 76 ---------------------~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~ 134 (144)
T cd00046 76 ---------------------LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKD 134 (144)
T ss_pred ---------------------hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCcc
Confidence 1246789999999887654432 344789999999999988765543 34444567
Q ss_pred cceEeecccc
Q 000496 457 RHRVLLTGTP 466 (1462)
Q Consensus 457 ~~rLLLTGTP 466 (1462)
..++++||||
T Consensus 135 ~~~i~~saTp 144 (144)
T cd00046 135 RQVLLLSATP 144 (144)
T ss_pred ceEEEEeccC
Confidence 7899999998
No 116
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.36 E-value=2.8e-10 Score=145.28 Aligned_cols=132 Identities=18% Similarity=0.219 Sum_probs=110.2
Q ss_pred chHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccc
Q 000496 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1462)
Q Consensus 607 SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTra 686 (1462)
.+++..|.+-|......|.+||||+.....++.|.++|...|+++..++|.++..+|.+++..|.. +.+.+|++|..
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~---G~i~VLV~t~~ 501 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL---GEFDVLVGINL 501 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc---CCceEEEEcCh
Confidence 567777888888888889999999999999999999999999999999999999999999999965 44668999999
Q ss_pred cccccCcccCCEEEEecC-----CCChhhHHHHHhhhhccCCCCcEEEEEEecCCC--HHHHHHH
Q 000496 687 GGLGINLATADTVIIYDS-----DWNPHADLQAMARAHRLGQTNKVMIFRLITRGS--IEERMMQ 744 (1462)
Q Consensus 687 gg~GINL~~Ad~VIi~D~-----dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~T--iEE~I~e 744 (1462)
+++|++++.+++||++|. +-+...++|++||++|.. .. .++.|+...| +...|.+
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~G--~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NG--KVIMYADKITDSMQKAIEE 563 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-CC--EEEEEEcCCCHHHHHHHHH
Confidence 999999999999999994 557889999999999973 22 3444554443 4444444
No 117
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.33 E-value=1.1e-10 Score=149.13 Aligned_cols=118 Identities=16% Similarity=0.200 Sum_probs=103.6
Q ss_pred hchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeecc
Q 000496 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1462)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTr 685 (1462)
...|+..|.+.+..+...|..|||||+.+...+.|..+|...|+++..|++ ...+|++.|..|.. ....++|+|.
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG---~~g~VtIATN 654 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAG---QKGAVTIATN 654 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcC---CCCeEEEecc
Confidence 456999999999999999999999999999999999999999999999997 57799999999954 3335899999
Q ss_pred ccccccCcccCC--------EEEEecCCCChhhHHHHHhhhhccCCCCcEE
Q 000496 686 AGGLGINLATAD--------TVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1462)
Q Consensus 686 agg~GINL~~Ad--------~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~ 728 (1462)
.+|+|+++.-.+ +||.++.+-+...+.|++||++|.|..-...
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ 705 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESV 705 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceE
Confidence 999999998443 4488899999999999999999999886553
No 118
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.31 E-value=3.9e-11 Score=155.70 Aligned_cols=314 Identities=15% Similarity=0.158 Sum_probs=213.6
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCCCCeEE
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vv 362 (1462)
...||-|.++|+-. ..|..+++-..+|.||++.-- |=.++ -.+-+|||-|+ ||+......+.. .++...
T Consensus 263 ~~FR~~Q~eaI~~~----l~Gkd~fvlmpTG~GKSLCYQ--lPA~l--~~gitvVISPL~SLm~DQv~~L~~--~~I~a~ 332 (941)
T KOG0351|consen 263 KGFRPNQLEAINAT----LSGKDCFVLMPTGGGKSLCYQ--LPALL--LGGVTVVISPLISLMQDQVTHLSK--KGIPAC 332 (941)
T ss_pred ccCChhHHHHHHHH----HcCCceEEEeecCCceeeEee--ccccc--cCCceEEeccHHHHHHHHHHhhhh--cCccee
Confidence 46999999999743 689999999999999997531 00111 12368999997 888766666633 256666
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccC---C-Cc---ceeEecc
Q 000496 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLK---P-IK---WQCMIVD 435 (1462)
Q Consensus 363 vy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~---~-i~---w~~VIVD 435 (1462)
.+.+..........+... .......+++..|.|.+......+. . .. ..++|||
T Consensus 333 ~L~s~q~~~~~~~i~q~l--------------------~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vID 392 (941)
T KOG0351|consen 333 FLSSIQTAAERLAILQKL--------------------ANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVID 392 (941)
T ss_pred eccccccHHHHHHHHHHH--------------------hCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEec
Confidence 666665554332222111 0112467899999999876433221 1 11 5789999
Q ss_pred cccccCCcc-------hHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000496 436 EGHRLKNKD-------SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1462)
Q Consensus 436 EAHrlKN~~-------Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L 508 (1462)
|||-..... .++......+..--.+.||||--..--+++...|++-.|..|.+.
T Consensus 393 EAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s------------------- 453 (941)
T KOG0351|consen 393 EAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS------------------- 453 (941)
T ss_pred HHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc-------------------
Confidence 999875432 233333334444467889999755555666666665555433211
Q ss_pred HHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000496 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1462)
Q Consensus 509 ~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~ 588 (1462)
..++.-.+-|....+ ...+..++...+.
T Consensus 454 ------------------fnR~NL~yeV~~k~~------------------------~~~~~~~~~~~~~---------- 481 (941)
T KOG0351|consen 454 ------------------FNRPNLKYEVSPKTD------------------------KDALLDILEESKL---------- 481 (941)
T ss_pred ------------------CCCCCceEEEEeccC------------------------ccchHHHHHHhhh----------
Confidence 112222222222221 0111112221111
Q ss_pred CCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHH
Q 000496 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1462)
Q Consensus 589 ~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id 668 (1462)
...+.-.||||....+.+.+...|...|++...++++++..+|+.+-.
T Consensus 482 --------------------------------~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~ 529 (941)
T KOG0351|consen 482 --------------------------------RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQK 529 (941)
T ss_pred --------------------------------cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHH
Confidence 123567899999999999999999999999999999999999999999
Q ss_pred HHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEe
Q 000496 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 733 (1462)
Q Consensus 669 ~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLv 733 (1462)
.|..+. +.+++.|=|.|.|||-+++..||+|..+-+..-+-|..|||+|-|+...+..|+=.
T Consensus 530 ~w~~~~---~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~ 591 (941)
T KOG0351|consen 530 AWMSDK---IRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGY 591 (941)
T ss_pred HHhcCC---CeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecch
Confidence 998644 56899999999999999999999999999999999999999999999877766543
No 119
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.31 E-value=1.6e-09 Score=139.34 Aligned_cols=123 Identities=21% Similarity=0.257 Sum_probs=106.5
Q ss_pred chHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccc
Q 000496 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1462)
Q Consensus 607 SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTra 686 (1462)
.+++..|...|......|.+|||||.....++.|..+|...|+++..++|.++..+|..++..|.. +.+.+|++|..
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~---g~i~vlV~t~~ 505 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRL---GEFDVLVGINL 505 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHc---CCceEEEEeCH
Confidence 456777878888888889999999999999999999999999999999999999999999999965 34568999999
Q ss_pred cccccCcccCCEEEEecCC-----CChhhHHHHHhhhhccCCCCcEEEEEEecC
Q 000496 687 GGLGINLATADTVIIYDSD-----WNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1462)
Q Consensus 687 gg~GINL~~Ad~VIi~D~d-----WNP~~d~QAigRahRiGQ~k~V~VyrLvt~ 735 (1462)
++.|++++.+++||++|.+ -++..++|++||++|- . .-.++.|++.
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~ 556 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADK 556 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecC
Confidence 9999999999999999974 5889999999999994 3 2335555553
No 120
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.29 E-value=7.7e-12 Score=116.18 Aligned_cols=81 Identities=31% Similarity=0.507 Sum_probs=75.5
Q ss_pred HHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhh
Q 000496 639 LLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARA 718 (1462)
Q Consensus 639 iLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRa 718 (1462)
.|.++|...++.+..++|.++..+|..+++.|+.+.. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4678888889999999999999999999999987554 5899999999999999999999999999999999999999
Q ss_pred hccC
Q 000496 719 HRLG 722 (1462)
Q Consensus 719 hRiG 722 (1462)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 121
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.28 E-value=2.7e-10 Score=143.21 Aligned_cols=310 Identities=17% Similarity=0.231 Sum_probs=180.8
Q ss_pred HhhccCCcEEEEecCCCchHHHHHHHHHHHHhC---------CCCcEEEEEcc-hhH----HHHHHHHHHHCCCCeEEEE
Q 000496 299 FSWSKQTHVILADEMGLGKTIQSIAFLASLFGE---------RISPHLVVAPL-STL----RNWEREFATWAPQMNVVMY 364 (1462)
Q Consensus 299 ~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~---------~~~p~LIVvP~-sll----~qW~~E~~k~~P~l~vvvy 364 (1462)
-.|..+.|+|++..+|+|||..|...+..+.++ +.-+++-|+|. ++. .+|..-|.-| ++.|..+
T Consensus 121 ~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~--gi~v~EL 198 (1230)
T KOG0952|consen 121 VAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL--GISVREL 198 (1230)
T ss_pred hhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc--cceEEEe
Confidence 356889999999999999999986665555543 11288999996 433 4455555444 6889999
Q ss_pred EcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh-------hhcccCCCcceeEecccc
Q 000496 365 VGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL-------DSASLKPIKWQCMIVDEG 437 (1462)
Q Consensus 365 ~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~-------d~~~L~~i~w~~VIVDEA 437 (1462)
+|+.+.-+. .....+|+|||.|..-- +...+. ...+|||||.
T Consensus 199 TGD~ql~~t-----------------------------ei~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEV 247 (1230)
T KOG0952|consen 199 TGDTQLTKT-----------------------------EIADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEV 247 (1230)
T ss_pred cCcchhhHH-----------------------------HHHhcCEEEecccceeeeeeeeccchhhhh--heeeEEeeee
Confidence 998654221 12467899999886511 111222 2468999999
Q ss_pred cccCCcch-----HHHHHHHhc----cccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000496 438 HRLKNKDS-----KLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1462)
Q Consensus 438 HrlKN~~S-----k~~~~l~~l----~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L 508 (1462)
|-|...-. ...+.++.. +.-+.++||||- -|+.|+ -.||..+.....-.|...|....
T Consensus 248 HlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATl--PN~eDv---A~fL~vn~~~glfsFd~~yRPvp-------- 314 (1230)
T KOG0952|consen 248 HLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATL--PNYEDV---ARFLRVNPYAGLFSFDQRYRPVP-------- 314 (1230)
T ss_pred hhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccC--CCHHHH---HHHhcCCCccceeeecccccccc--------
Confidence 99976543 333444332 233568999993 244444 34555554444444444442110
Q ss_pred HHhhchhhhhhhHhhHhhcCCCceeEEEeecCC--HHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccc
Q 000496 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELS--SKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1462)
Q Consensus 509 ~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls--~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~ 586 (1462)
.....+-+.-. ..|.+..
T Consensus 315 ----------------------L~~~~iG~k~~~~~~~~~~~-------------------------------------- 334 (1230)
T KOG0952|consen 315 ----------------------LTQGFIGIKGKKNRQQKKNI-------------------------------------- 334 (1230)
T ss_pred ----------------------eeeeEEeeecccchhhhhhH--------------------------------------
Confidence 00111100000 0000000
Q ss_pred cCCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHH----hcCCe------------
Q 000496 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKWQ------------ 650 (1462)
Q Consensus 587 ~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~----~~gi~------------ 650 (1462)
..+++..+. +...+||.|+||+......--.+..|. ..|..
T Consensus 335 -------------------d~~~~~kv~----e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l 391 (1230)
T KOG0952|consen 335 -------------------DEVCYDKVV----EFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQL 391 (1230)
T ss_pred -------------------HHHHHHHHH----HHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHH
Confidence 011112222 233458888888877554333333332 22222
Q ss_pred -------EEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhh----------HHH
Q 000496 651 -------YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHA----------DLQ 713 (1462)
Q Consensus 651 -------~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~----------d~Q 713 (1462)
...-+.++.-.+|+..-+.|..+. +-+|++|...+.|+||++--.+|-=..-|++.. .+|
T Consensus 392 ~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~---i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQ 468 (1230)
T KOG0952|consen 392 KELFQQGMGIHHAGMLRSDRQLVEKEFKEGH---IKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQ 468 (1230)
T ss_pred HHHHHhhhhhcccccchhhHHHHHHHHhcCC---ceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHH
Confidence 223345666778888888887643 348999999999999997666665555566554 689
Q ss_pred HHhhhhccCCCCcEEEEEEecCCCHHH
Q 000496 714 AMARAHRLGQTNKVMIFRLITRGSIEE 740 (1462)
Q Consensus 714 AigRahRiGQ~k~V~VyrLvt~~TiEE 740 (1462)
.+|||+|..=.+.-..+.+.+.++++-
T Consensus 469 ifGRAGRPqFd~~G~giIiTt~dkl~~ 495 (1230)
T KOG0952|consen 469 IFGRAGRPQFDSSGEGIIITTRDKLDH 495 (1230)
T ss_pred HHhccCCCCCCCCceEEEEecccHHHH
Confidence 999999987666555555555554443
No 122
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.26 E-value=1.3e-09 Score=139.24 Aligned_cols=120 Identities=18% Similarity=0.206 Sum_probs=98.2
Q ss_pred hchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeecc
Q 000496 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1462)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTr 685 (1462)
...|+..+.+-+..+.+.|..|||-+..+..-+.|...|...|+++..++.... ..-..+|.. ++..+ .+.|+|.
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~--AG~~g--~VTIATN 624 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAG--AGKLG--AVTVATN 624 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHh--cCCCC--cEEEeec
Confidence 457899999999999999999999999999999999999999999999988743 222234433 33333 5789999
Q ss_pred ccccccCcccC--------CEEEEecCCCChhhHHHHHhhhhccCCCCcEEEE
Q 000496 686 AGGLGINLATA--------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1462)
Q Consensus 686 agg~GINL~~A--------d~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~Vy 730 (1462)
.+|.|.++.-. =+||.-..+-|...+.|..||++|.|..-....|
T Consensus 625 mAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~ 677 (970)
T PRK12899 625 MAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF 677 (970)
T ss_pred cccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE
Confidence 99999887533 3789999999999999999999999988765544
No 123
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.26 E-value=7.8e-11 Score=136.69 Aligned_cols=216 Identities=25% Similarity=0.288 Sum_probs=132.3
Q ss_pred eeEEEeecCCHHHHHHHHHHHHHHHHHHHhc---CC------------chhhHHHHHHHHHHHhCCcccccC-CCCCccc
Q 000496 532 KELILRVELSSKQKEYYKAILTRNYQILTRR---GG------------AQISLINVVMELRKLCCHPYMLEG-VEPDIED 595 (1462)
Q Consensus 532 ~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~---~~------------~~~~l~nil~~LRk~c~hP~L~~~-~e~~~~~ 595 (1462)
.++.++++|+..|++.|+.++.-.+..+.+. .. ....+..++.+|+.+|+||+|+-. .-+.-..
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll 83 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQLL 83 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccccc
Confidence 4688999999999999999988766554321 11 113455567789999999998632 2233333
Q ss_pred chHHHHHHhhhchHHHHHHHHHHHH-----HHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHH---
Q 000496 596 TNESFKQLLESSGKLQLLDKMMVKL-----KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI--- 667 (1462)
Q Consensus 596 ~~~~~~~li~~SgKl~~L~klL~~l-----~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~I--- 667 (1462)
..+....+...|||+.+|..+|..+ ...+.++||.++..+++|+|+.+|..+++.|.|++|.....+....-
T Consensus 84 ~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~ 163 (297)
T PF11496_consen 84 LSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNG 163 (297)
T ss_dssp STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----
T ss_pred cchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCccc
Confidence 4455678889999999999999999 66688999999999999999999999999999999986544443322
Q ss_pred ---------HHHhccCC-CCceEEeecccccc----ccCcccCCEEEEecCCCChhhHHHHHhh-hhccCCCCcEEEEEE
Q 000496 668 ---------DRFNAKNS-SRFCFLLSTRAGGL----GINLATADTVIIYDSDWNPHADLQAMAR-AHRLGQTNKVMIFRL 732 (1462)
Q Consensus 668 ---------d~Fn~~~s-~~fvfLlSTragg~----GINL~~Ad~VIi~D~dWNP~~d~QAigR-ahRiGQ~k~V~VyrL 732 (1462)
.......+ ...++|++|.-... .++-...|.||-||+.+++....-..-| .+|-+ +.+-|++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~--~~~PiirL 241 (297)
T PF11496_consen 164 NTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN--RLCPIIRL 241 (297)
T ss_dssp ------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---------S--EEEE
T ss_pred ccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC--CCCcEEEE
Confidence 11112222 33445555554433 1334467999999999999885444444 44443 88999999
Q ss_pred ecCCCHHHHHHHHHHHH
Q 000496 733 ITRGSIEERMMQMTKKK 749 (1462)
Q Consensus 733 vt~~TiEE~I~e~~~kK 749 (1462)
++.+|+|--++..-...
T Consensus 242 v~~nSiEHi~L~~~~~~ 258 (297)
T PF11496_consen 242 VPSNSIEHIELCFPKSS 258 (297)
T ss_dssp EETTSHHHHHHHHTTTS
T ss_pred eeCCCHHHHHHHccCcc
Confidence 99999999887765544
No 124
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.25 E-value=8.6e-10 Score=137.79 Aligned_cols=120 Identities=21% Similarity=0.192 Sum_probs=99.0
Q ss_pred hchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeecc
Q 000496 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1462)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTr 685 (1462)
...|+..+.+-+.++.+.|..|||.+..+..-+.|...|...|+++..+..... ..-..+|.+ ++..+ .+.|+|.
T Consensus 409 ~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~--AG~~g--aVTIATN 483 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAE--AGKYG--AVTVSTQ 483 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHh--cCCCC--cEEEEec
Confidence 456899999999999999999999999999999999999999999999998744 333445543 23333 5789999
Q ss_pred ccccccCcccC---------------CEEEEecCCCChhhHHHHHhhhhccCCCCcEEEE
Q 000496 686 AGGLGINLATA---------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1462)
Q Consensus 686 agg~GINL~~A---------------d~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~Vy 730 (1462)
.+|.|.|+.-. =+||.-..+=|-..+.|..||++|.|..-....|
T Consensus 484 MAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 484 MAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred CCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 99999887632 2789888999999999999999999988766554
No 125
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.22 E-value=6.2e-10 Score=144.93 Aligned_cols=356 Identities=15% Similarity=0.131 Sum_probs=207.0
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC---CCcEEEEEcc-hhHHHHHHHHHHHCCCC
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPL-STLRNWEREFATWAPQM 359 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~---~~p~LIVvP~-sll~qW~~E~~k~~P~l 359 (1462)
...+++|..++++....+..+..++|..+||.|||..++.+..+..... ...++.|.|. +++.+-.+.+..+....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 3468899999998877766665899999999999999988888877663 3478888886 55566777788877555
Q ss_pred eEEEE--EcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcc------cCCCccee
Q 000496 360 NVVMY--VGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS------LKPIKWQC 431 (1462)
Q Consensus 360 ~vvvy--~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~------L~~i~w~~ 431 (1462)
.+..- +|.....-. ...+. ... ............-+.+.+++...+...... +..+.-.+
T Consensus 274 ~~~~~~~h~~~~~~~~-~~~~~---------~~~--~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~ 341 (733)
T COG1203 274 SVIGKSLHSSSKEPLL-LEPDQ---------DIL--LTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSL 341 (733)
T ss_pred ccccccccccccchhh-hcccc---------ccc--eeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhc
Confidence 55444 444433211 11100 000 000000001112223333333222221111 22244568
Q ss_pred EecccccccCCc-chHHHHHHHhc-c--ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHH
Q 000496 432 MIVDEGHRLKNK-DSKLFSSLKQY-S--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1462)
Q Consensus 432 VIVDEAHrlKN~-~Sk~~~~l~~l-~--~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~ 507 (1462)
+|+||+|-+--. ......++..+ . ....|++|||+ | ..|.+.+
T Consensus 342 vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATl----------------P------~~~~~~l----------- 388 (733)
T COG1203 342 VILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATL----------------P------PFLKEKL----------- 388 (733)
T ss_pred hhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCC----------------C------HHHHHHH-----------
Confidence 999999998665 33333333222 2 45789999996 0 1111111
Q ss_pred HHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccccc
Q 000496 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (1462)
Q Consensus 508 L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~ 587 (1462)
...+.... .. ..+.+ .+ ..++.|.+..
T Consensus 389 -~~~~~~~~-----~~---~~~~~-----~~---------------------------------------~~~~e~~~~~ 415 (733)
T COG1203 389 -KKALGKGR-----EV---VENAK-----FC---------------------------------------PKEDEPGLKR 415 (733)
T ss_pred -HHHHhccc-----ce---ecccc-----cc---------------------------------------cccccccccc
Confidence 11110000 00 00000 00 0001111100
Q ss_pred CCCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHH
Q 000496 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (1462)
Q Consensus 588 ~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~I 667 (1462)
....... .... ..+...+..-...|.+|+|.++.+..+-.+...|+..+.+++.+++......|.+.+
T Consensus 416 ~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke 483 (733)
T COG1203 416 KERVDVE-----------DGPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKE 483 (733)
T ss_pred ccchhhh-----------hhhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHH
Confidence 0000000 0000 112223333345689999999999999999999998888899999999999999999
Q ss_pred HHHhcc-CCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccC--CCCcEEEEEEecCCCHHHHHHH
Q 000496 668 DRFNAK-NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG--QTNKVMIFRLITRGSIEERMMQ 744 (1462)
Q Consensus 668 d~Fn~~-~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiG--Q~k~V~VyrLvt~~TiEE~I~e 744 (1462)
+...+- ..+.-.++|+|.+...|+|+. .|.+|===+ -....+||.||++|-| ....+.||...-......+.++
T Consensus 484 ~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe~a--PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~ 560 (733)
T COG1203 484 RELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITELA--PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYE 560 (733)
T ss_pred HHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeecCC--CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhh
Confidence 876542 111223899999999999987 666553222 2567899999999999 5567888888777777777777
Q ss_pred HHHHHHHH
Q 000496 745 MTKKKMVL 752 (1462)
Q Consensus 745 ~~~kK~~L 752 (1462)
....++.-
T Consensus 561 ~~~~~~~~ 568 (733)
T COG1203 561 KLEKKLKS 568 (733)
T ss_pred cchhhhcc
Confidence 66665543
No 126
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.22 E-value=6.2e-10 Score=148.36 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=88.5
Q ss_pred cCCeEEEEecchhhHHHHHHHHHhcC---CeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEE
Q 000496 623 QGHRVLIYSQFQHMLDLLEDYLTFKK---WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1462)
Q Consensus 623 ~g~KVLIFSq~~~~ldiLed~L~~~g---i~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~V 699 (1462)
....+|||..-...++.+.+.|...+ +.+..++|+++.++|+.++..+ . . ..+|++|..+..||+++.+++|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~-~-rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---S-G-RRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---C-C-ceEEEeccHHHhccccCCeeEE
Confidence 34689999999999999999998764 4578899999999999885433 2 2 3479999999999999999999
Q ss_pred EEecCC----C--------------ChhhHHHHHhhhhccCCCCcEEEEEEecCCCHHH
Q 000496 700 IIYDSD----W--------------NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1462)
Q Consensus 700 Ii~D~d----W--------------NP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE 740 (1462)
|-++.. | +-....||.||++|.| +-.+|+|+++...+.
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFNS 408 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHHh
Confidence 987621 2 3357899999999987 667899998765543
No 127
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.21 E-value=6.9e-10 Score=147.41 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=87.4
Q ss_pred cCCeEEEEecchhhHHHHHHHHHhcCCe---EEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEE
Q 000496 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQ---YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1462)
Q Consensus 623 ~g~KVLIFSq~~~~ldiLed~L~~~gi~---~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~V 699 (1462)
....+|||+.....++.+.+.|...+++ +.-++|+++..+|..+++.+ +...+|++|..++.||+++.+++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~-----g~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH-----SGRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc-----CCeeEEEeccHHhhccccCcceEE
Confidence 3568999999999999999999887765 56789999999999886642 334589999999999999999999
Q ss_pred EEec---------------CCCCh---hhHHHHHhhhhccCCCCcEEEEEEecCCCHH
Q 000496 700 IIYD---------------SDWNP---HADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1462)
Q Consensus 700 Ii~D---------------~dWNP---~~d~QAigRahRiGQ~k~V~VyrLvt~~TiE 739 (1462)
|.++ .+-.| ..+.||.||++|. .+-.+|+|+++..++
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDFL 414 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHHH
Confidence 9874 22223 5688888888887 356788999876543
No 128
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2.2e-10 Score=131.95 Aligned_cols=308 Identities=19% Similarity=0.263 Sum_probs=196.6
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC--CCcEEEEEcchhHHHH-HHHHHHHCCCC--e
Q 000496 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNW-EREFATWAPQM--N 360 (1462)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~--~~p~LIVvP~sll~qW-~~E~~k~~P~l--~ 360 (1462)
...-|..|+-=+ -+|.+++.....|+|||.+-...+....... ..-+||++|...+.+- ..-...+.... +
T Consensus 49 PSaIQqraI~p~----i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~ 124 (397)
T KOG0327|consen 49 PSAIQQRAILPC----IKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVS 124 (397)
T ss_pred chHHHhcccccc----ccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhccccee
Confidence 344566665322 5789999999999999988433333322211 1268999999777554 33345555444 3
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh--hhcccCCCcceeEeccccc
Q 000496 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL--DSASLKPIKWQCMIVDEGH 438 (1462)
Q Consensus 361 vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~--d~~~L~~i~w~~VIVDEAH 438 (1462)
+....|....+..-. .......+|++.|...+.. +...|..-...+.|+|||.
T Consensus 125 v~~~igg~~~~~~~~-------------------------~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 125 VHACIGGTNVRREDQ-------------------------ALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred eeeecCcccchhhhh-------------------------hhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 443444332221000 0112356788888865532 2225555567799999999
Q ss_pred ccCC--cchHHHHHHHhcccc-ceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchh
Q 000496 439 RLKN--KDSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPH 515 (1462)
Q Consensus 439 rlKN--~~Sk~~~~l~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~p~ 515 (1462)
.... ..-+++..+..+..+ ..+++|||- +.++.- ..+.|
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~----p~~vl~---------------vt~~f------------------- 221 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATM----PSDVLE---------------VTKKF------------------- 221 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccC----cHHHHH---------------HHHHh-------------------
Confidence 8754 344566666666544 457778873 111000 00000
Q ss_pred hhhhhHhhHhhcCCCceeEEEeec---CC-HHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000496 516 LLRRVKKDVMKELPPKKELILRVE---LS-SKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1462)
Q Consensus 516 ~LRR~K~dV~~~LPpk~e~iv~v~---ls-~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~ 591 (1462)
+.. ...+.+. +| +-++.+|-..
T Consensus 222 -------------~~~-pv~i~vkk~~ltl~gikq~~i~v---------------------------------------- 247 (397)
T KOG0327|consen 222 -------------MRE-PVRILVKKDELTLEGIKQFYINV---------------------------------------- 247 (397)
T ss_pred -------------ccC-ceEEEecchhhhhhheeeeeeec----------------------------------------
Confidence 000 0011111 11 0001111000
Q ss_pred CcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHh
Q 000496 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1462)
Q Consensus 592 ~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn 671 (1462)
....|+..|..+.+ .-...+||++..+-++.|.+.|..+|+....++|.+...+|..++..|+
T Consensus 248 -------------~k~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~ 310 (397)
T KOG0327|consen 248 -------------EKEEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFR 310 (397)
T ss_pred -------------cccccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhh
Confidence 01116666777666 3346899999999999999999999999999999999999999999998
Q ss_pred ccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCC
Q 000496 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1462)
Q Consensus 672 ~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1462)
.+.+. +|++|...+.||+++.++.||.||.|-|..+|+.++||++|.|.+-- ...++++.
T Consensus 311 ~gssr---vlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~--~in~v~~~ 370 (397)
T KOG0327|consen 311 SGSSR---VLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGV--AINFVTEE 370 (397)
T ss_pred cCCce---EEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCce--eeeeehHh
Confidence 86665 89999999999999999999999999999999999999999997642 23455543
No 129
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.13 E-value=8e-10 Score=121.79 Aligned_cols=153 Identities=20% Similarity=0.208 Sum_probs=105.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH-HHHHHHHHhC--CCC-cEEEEEcc-hhHHHHHHHHHHHCC--
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGE--RIS-PHLVVAPL-STLRNWEREFATWAP-- 357 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~L~~~--~~~-p~LIVvP~-sll~qW~~E~~k~~P-- 357 (1462)
.+++||.++++-+ .++.+.++..++|.|||++. +.++..+... ..+ .+|||+|. .++.|+...+..+..
T Consensus 21 ~~~~~Q~~~~~~~----~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPL----LSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHH----hcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 5899999999776 44889999999999999884 4455555544 233 79999996 788899999888864
Q ss_pred CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcceeEecc
Q 000496 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVD 435 (1462)
Q Consensus 358 ~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~--~~L~~i~w~~VIVD 435 (1462)
+.++..++|..........+ ....+|+|+|.+.+.... ..+.--.++++|+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvD 150 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKL--------------------------KRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLD 150 (203)
T ss_pred CceEEEEECCCCHHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEe
Confidence 56777788866543322211 125689999988764421 11222356899999
Q ss_pred cccccCCcc-h-HHHHHHHhcc-ccceEeeccccc
Q 000496 436 EGHRLKNKD-S-KLFSSLKQYS-TRHRVLLTGTPL 467 (1462)
Q Consensus 436 EAHrlKN~~-S-k~~~~l~~l~-~~~rLLLTGTPl 467 (1462)
|+|.+.+.. . .+...+..+. ....+++||||-
T Consensus 151 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 151 EADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred ChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 999986543 2 2222333444 356789999984
No 130
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.13 E-value=3.7e-10 Score=130.42 Aligned_cols=313 Identities=17% Similarity=0.256 Sum_probs=205.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHH-HHHHHHHhC-CCC-cEEEEEcch-hHHH---HHHHHHHHCC
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGE-RIS-PHLVVAPLS-TLRN---WEREFATWAP 357 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~L~~~-~~~-p~LIVvP~s-ll~q---W~~E~~k~~P 357 (1462)
+..|.|...++-+ ..+...+-..-+|.|||..-+ -.+..|... ..+ +.||+.|+. +..| ...++.+++
T Consensus 43 ~ptpiqRKTipli----Le~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt- 117 (529)
T KOG0337|consen 43 TPTPIQRKTIPLI----LEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGT- 117 (529)
T ss_pred CCCchhcccccce----eeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcccc-
Confidence 4667777776644 455666666779999997643 334444432 223 899999974 4444 345555555
Q ss_pred CCeEE-EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc--ccCCCcceeEec
Q 000496 358 QMNVV-MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIV 434 (1462)
Q Consensus 358 ~l~vv-vy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~--~L~~i~w~~VIV 434 (1462)
++... .|.|++.+.+.+.- ..+.|+|+.|...+..-.. .|.--...+||+
T Consensus 118 ~lr~s~~~ggD~~eeqf~~l---------------------------~~npDii~ATpgr~~h~~vem~l~l~sveyVVf 170 (529)
T KOG0337|consen 118 KLRQSLLVGGDSIEEQFILL---------------------------NENPDIIIATPGRLLHLGVEMTLTLSSVEYVVF 170 (529)
T ss_pred chhhhhhcccchHHHHHHHh---------------------------ccCCCEEEecCceeeeeehheeccccceeeeee
Confidence 45555 55555554433221 1356889988877643221 133334578999
Q ss_pred ccccccCC--cchHHHHHHHhccc-cceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHh
Q 000496 435 DEGHRLKN--KDSKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1462)
Q Consensus 435 DEAHrlKN--~~Sk~~~~l~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~l 511 (1462)
|||.+|-. ..-++.+.+..++. .-.+++|||- .+.+. +|... .+
T Consensus 171 dEadrlfemgfqeql~e~l~rl~~~~QTllfSatl-p~~lv------------------~faka--------------Gl 217 (529)
T KOG0337|consen 171 DEADRLFEMGFQEQLHEILSRLPESRQTLLFSATL-PRDLV------------------DFAKA--------------GL 217 (529)
T ss_pred hhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC-chhhH------------------HHHHc--------------cC
Confidence 99999953 45678888888864 4578999993 11111 01000 01
Q ss_pred hchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000496 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1462)
Q Consensus 512 L~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~ 591 (1462)
..|.++| -||. -.+++ ..+++.
T Consensus 218 ~~p~lVR---ldve------------tkise------------------------------~lk~~f------------- 239 (529)
T KOG0337|consen 218 VPPVLVR---LDVE------------TKISE------------------------------LLKVRF------------- 239 (529)
T ss_pred CCCceEE---eehh------------hhcch------------------------------hhhhhe-------------
Confidence 1111111 0110 00000 001111
Q ss_pred CcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHh
Q 000496 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1462)
Q Consensus 592 ~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn 671 (1462)
..+....|...|..++..... .++.+||+.-....+++...|...|+....|.|++....|..-+.+|+
T Consensus 240 ----------~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~ 308 (529)
T KOG0337|consen 240 ----------FRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFR 308 (529)
T ss_pred ----------eeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhcccccc
Confidence 112334567777777766443 458999999999999999999999999999999999999999999997
Q ss_pred ccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCC
Q 000496 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1462)
Q Consensus 672 ~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1462)
.... -+|++|+.+..|++++-.+.||.||.+-.+..+..|.||+.|-|.+- ..|-||+..
T Consensus 309 ~~k~---~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg--~aYs~V~~~ 368 (529)
T KOG0337|consen 309 GRKT---SILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTG--RAYSLVAST 368 (529)
T ss_pred CCcc---ceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccc--eEEEEEecc
Confidence 6444 48999999999999999999999999999999999999999998763 455666543
No 131
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.12 E-value=5.8e-10 Score=118.69 Aligned_cols=155 Identities=21% Similarity=0.273 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC-CCcEEEEEcc-hhHHHHHHHHHHHCCC--CeEEE
Q 000496 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPL-STLRNWEREFATWAPQ--MNVVM 363 (1462)
Q Consensus 288 pyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~-~~p~LIVvP~-sll~qW~~E~~k~~P~--l~vvv 363 (1462)
|+|.+++.-+ ..+++.++...+|.|||..++..+....... ...+||++|. +++.+-..++..++.. .++..
T Consensus 2 ~~Q~~~~~~i----~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 2 PLQQEAIEAI----ISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp HHHHHHHHHH----HTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred HHHHHHHHHH----HcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccc
Confidence 7999998776 3678899999999999999876655544443 3489999996 7788888899988854 67888
Q ss_pred EEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcc--cCCCcceeEecccccccC
Q 000496 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHRLK 441 (1462)
Q Consensus 364 y~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~--L~~i~w~~VIVDEAHrlK 441 (1462)
++|.......... + -....+|+|+|++.+...... +.-...++|||||+|.+-
T Consensus 78 ~~~~~~~~~~~~~--~-----------------------~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~ 132 (169)
T PF00270_consen 78 LHGGQSISEDQRE--V-----------------------LSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLS 132 (169)
T ss_dssp ESTTSCHHHHHHH--H-----------------------HHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHH
T ss_pred ccccccccccccc--c-----------------------ccccccccccCcchhhccccccccccccceeeccCcccccc
Confidence 7775542211111 0 013578999999999765443 112236899999999996
Q ss_pred Cc--chHHHHHHHhc---cccceEeeccccccCCHH
Q 000496 442 NK--DSKLFSSLKQY---STRHRVLLTGTPLQNNLD 472 (1462)
Q Consensus 442 N~--~Sk~~~~l~~l---~~~~rLLLTGTPlqNnl~ 472 (1462)
.. .......+..+ .....+++||||- .+++
T Consensus 133 ~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 133 DETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVE 167 (169)
T ss_dssp HTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHH
T ss_pred cccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHh
Confidence 63 22333333333 2356899999996 4443
No 132
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.11 E-value=4.9e-09 Score=134.06 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=99.5
Q ss_pred hhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeec
Q 000496 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1462)
Q Consensus 605 ~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlST 684 (1462)
....|+..+.+-+..+.+.|..|||-+..+..-+.|..+|...|+++..+..... ..-..+|. +++..+ .+.|+|
T Consensus 430 t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa--~AG~~G--aVTIAT 504 (913)
T PRK13103 430 TAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIA--QAGRPG--ALTIAT 504 (913)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHH--cCCCCC--cEEEec
Confidence 3467999999999999999999999999999999999999999999988887643 23334444 344444 478999
Q ss_pred cccccccCcc-------------------------------------cCCEEEEecCCCChhhHHHHHhhhhccCCCCcE
Q 000496 685 RAGGLGINLA-------------------------------------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (1462)
Q Consensus 685 ragg~GINL~-------------------------------------~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V 727 (1462)
..+|.|.|+. ..=+||.-..+=|-..+.|..||++|.|..-..
T Consensus 505 NMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS 584 (913)
T PRK13103 505 NMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSS 584 (913)
T ss_pred cCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 9999998874 123789999999999999999999999988766
Q ss_pred EEEE
Q 000496 728 MIFR 731 (1462)
Q Consensus 728 ~Vyr 731 (1462)
..|-
T Consensus 585 ~f~l 588 (913)
T PRK13103 585 RFYL 588 (913)
T ss_pred EEEE
Confidence 5543
No 133
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.09 E-value=3.1e-09 Score=140.98 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=63.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHH-HH---HHHC
Q 000496 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWER-EF---ATWA 356 (1462)
Q Consensus 282 ~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~-E~---~k~~ 356 (1462)
.|.+.||+|.+.+..+...+..+..+++-..+|+|||+..+.-+..... ...+++|.||+ ++..||.. ++ .+.+
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~ 320 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-TEKPVVISTNTKVLQSQLLEKDIPLLNEIL 320 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHHHHHHHHc
Confidence 4568999999998888888888888999999999999987655444333 33599999997 55677743 44 4444
Q ss_pred C-CCeEEEEEcCh
Q 000496 357 P-QMNVVMYVGTS 368 (1462)
Q Consensus 357 P-~l~vvvy~G~~ 368 (1462)
+ .+++++..|..
T Consensus 321 ~~~~~~~~~kG~~ 333 (850)
T TIGR01407 321 NFKINAALIKGKS 333 (850)
T ss_pred CCCceEEEEEcch
Confidence 3 47777777654
No 134
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.07 E-value=4.1e-09 Score=119.41 Aligned_cols=297 Identities=17% Similarity=0.150 Sum_probs=190.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCCCCeEE
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vv 362 (1462)
.+.||.|++++|-. ..+..++|...+|-||++.-- +-.|... +-.|||||+ |++....-.++...-+...+
T Consensus 93 ekfrplq~~ain~~----ma~ed~~lil~tgggkslcyq--lpal~ad--g~alvi~plislmedqil~lkqlgi~as~l 164 (695)
T KOG0353|consen 93 EKFRPLQLAAINAT----MAGEDAFLILPTGGGKSLCYQ--LPALCAD--GFALVICPLISLMEDQILQLKQLGIDASML 164 (695)
T ss_pred HhcChhHHHHhhhh----hccCceEEEEeCCCccchhhh--hhHHhcC--CceEeechhHHHHHHHHHHHHHhCcchhhc
Confidence 35899999999875 678899999999999997521 1222222 478999997 88877777777765433322
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcc-------cCCCcceeEecc
Q 000496 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-------LKPIKWQCMIVD 435 (1462)
Q Consensus 363 vy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~-------L~~i~w~~VIVD 435 (1462)
--..+++.-... +-+ ..+....|..+..|.+.+.+...+ +..-.|.++-||
T Consensus 165 nansske~~k~v-~~~---------------------i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaid 222 (695)
T KOG0353|consen 165 NANSSKEEAKRV-EAA---------------------ITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAID 222 (695)
T ss_pred cCcccHHHHHHH-HHH---------------------HcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeec
Confidence 222222221111 111 112345788899999888654333 333357899999
Q ss_pred cccccCC-------cchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000496 436 EGHRLKN-------KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1462)
Q Consensus 436 EAHrlKN-------~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L 508 (1462)
|+|.... ..+.+...-+.|+....++||||...+-+.+.-.+|..-..- .
T Consensus 223 evhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~------t----------------- 279 (695)
T KOG0353|consen 223 EVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAF------T----------------- 279 (695)
T ss_pred ceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhh------e-----------------
Confidence 9998742 233333444567777889999997655555544333321000 0
Q ss_pred HHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000496 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1462)
Q Consensus 509 ~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~ 588 (1462)
+|--.|.|-|.-.
T Consensus 280 -------------------------------------------------------------------f~a~fnr~nl~ye 292 (695)
T KOG0353|consen 280 -------------------------------------------------------------------FRAGFNRPNLKYE 292 (695)
T ss_pred -------------------------------------------------------------------eecccCCCCceeE
Confidence 0001111111111
Q ss_pred CCCCcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHH
Q 000496 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1462)
Q Consensus 589 ~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id 668 (1462)
+...+...++. +.-+.+++..- -.|..-||||-...-.+.+...|+..|+....++..+.+++|.-+-.
T Consensus 293 v~qkp~n~dd~----------~edi~k~i~~~-f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq 361 (695)
T KOG0353|consen 293 VRQKPGNEDDC----------IEDIAKLIKGD-FAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQ 361 (695)
T ss_pred eeeCCCChHHH----------HHHHHHHhccc-cCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccc
Confidence 11111111111 11122223221 13778899999988999999999999999999999999998888877
Q ss_pred HHhccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHH
Q 000496 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQA 714 (1462)
Q Consensus 669 ~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QA 714 (1462)
.+-+ +.+.+++.|-|.|.||+-+.+..||+-..+-+-.++-||
T Consensus 362 ~w~a---~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqa 404 (695)
T KOG0353|consen 362 GWIA---GEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQA 404 (695)
T ss_pred cccc---cceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHH
Confidence 7744 556689999999999999999999999999999999994
No 135
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.04 E-value=2e-08 Score=116.10 Aligned_cols=322 Identities=15% Similarity=0.166 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCCCCeEEEEEc
Q 000496 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVG 366 (1462)
Q Consensus 288 pyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vvvy~G 366 (1462)
|-|..+++-+. ..+..+.+.+.+|.||++.-- |-.|...+ -++||-|+ .++......+.+.--....+--.-
T Consensus 23 ~LQE~A~~c~V---K~k~DVyVsMPTGaGKSLCyQ--LPaL~~~g--ITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKl 95 (641)
T KOG0352|consen 23 RLQEQAINCIV---KRKCDVYVSMPTGAGKSLCYQ--LPALVHGG--ITIVISPLIALIKDQIDHLKRLKVPCESLNSKL 95 (641)
T ss_pred hHHHHHHHHHH---hccCcEEEeccCCCchhhhhh--chHHHhCC--eEEEehHHHHHHHHHHHHHHhcCCchhHhcchh
Confidence 57888887653 567789999999999997521 22233333 67888886 667667777765431100000000
Q ss_pred ChhHHH-HHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh-----ccc-CCCcceeEecccccc
Q 000496 367 TSQARN-IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS-----ASL-KPIKWQCMIVDEGHR 439 (1462)
Q Consensus 367 ~~~~R~-~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~-----~~L-~~i~w~~VIVDEAHr 439 (1462)
+..+|. ++.+.+ .....-.++.+|.++...+. ..| +.-...+++|||||.
T Consensus 96 St~ER~ri~~DL~-----------------------~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHC 152 (641)
T KOG0352|consen 96 STVERSRIMGDLA-----------------------KEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHC 152 (641)
T ss_pred hHHHHHHHHHHHH-----------------------hcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhh
Confidence 112222 222221 11233446777787765431 112 222457899999998
Q ss_pred cCCc------chHHHHHHHhc-cccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHH-HhhhhhHHHHHHHHHh
Q 000496 440 LKNK------DSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEE-FKDINQEEQISRLHRM 511 (1462)
Q Consensus 440 lKN~------~Sk~~~~l~~l-~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~-f~~~~~~~~i~~L~~l 511 (1462)
..-. +-...-+|+.. ..---+.||||--..--+|+|..|++-.|-..-.-..|... |-+
T Consensus 153 VSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD------------- 219 (641)
T KOG0352|consen 153 VSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYD------------- 219 (641)
T ss_pred HhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHH-------------
Confidence 7432 22222333332 23345789999866667788888887666332111122110 100
Q ss_pred hchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000496 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1462)
Q Consensus 512 L~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~ 591 (1462)
..|+.+++..+..| ..--+++...|--+.....
T Consensus 220 ----------------------------------~~~K~~I~D~~~~L-------------aDF~~~~LG~~~~~~~~~K 252 (641)
T KOG0352|consen 220 ----------------------------------NHMKSFITDCLTVL-------------ADFSSSNLGKHEKASQNKK 252 (641)
T ss_pred ----------------------------------HHHHHHhhhHhHhH-------------HHHHHHhcCChhhhhcCCC
Confidence 01122221111111 1111222222211110000
Q ss_pred CcccchHHHHHHhhhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHh
Q 000496 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1462)
Q Consensus 592 ~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn 671 (1462)
....--||||......+.+.-.|..+|++...++.+....+|-..-+.+-
T Consensus 253 ------------------------------~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM 302 (641)
T KOG0352|consen 253 ------------------------------TFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWM 302 (641)
T ss_pred ------------------------------CcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHh
Confidence 00123589999999999999999999999999999999999999999998
Q ss_pred ccCCCCceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEE
Q 000496 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRL 732 (1462)
Q Consensus 672 ~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrL 732 (1462)
.++-. +++.|-+.|.|++=+.+..||+++++-|-.-|-|--||++|-|-..-++.|+-
T Consensus 303 ~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYs 360 (641)
T KOG0352|consen 303 NNEIP---VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYS 360 (641)
T ss_pred cCCCC---EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeec
Confidence 75555 78999999999999999999999999999999999999999998888887753
No 136
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.01 E-value=4.4e-08 Score=124.27 Aligned_cols=120 Identities=18% Similarity=0.222 Sum_probs=99.6
Q ss_pred hchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeecc
Q 000496 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1462)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTr 685 (1462)
...|+..+.+-+..+.+.|..|||.+..+...+.|..+|...|+++..++.... ++++.|-. +++..+ .+.|+|.
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa-~AG~~G--aVTIATN 482 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA-KAGQKG--AITIATN 482 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH-hCCCCC--eEEEecc
Confidence 467899999999999999999999999999999999999999999999998643 33333322 344344 5789999
Q ss_pred ccccccCcccCC--------EEEEecCCCChhhHHHHHhhhhccCCCCcEEEE
Q 000496 686 AGGLGINLATAD--------TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1462)
Q Consensus 686 agg~GINL~~Ad--------~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~Vy 730 (1462)
.+|+|.++.-.. +||....+=|-..+.|..||++|.|..-....|
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 999999987544 899999999999999999999999988766554
No 137
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.98 E-value=3.9e-07 Score=108.84 Aligned_cols=132 Identities=20% Similarity=0.284 Sum_probs=108.2
Q ss_pred HHHHHHH---HHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeecccccc
Q 000496 613 LDKMMVK---LKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGL 689 (1462)
Q Consensus 613 L~klL~~---l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~ 689 (1462)
+++|+.+ ..+.|.||||-+=..+|.+-|.+||...|+++..++..+..-+|.++|..... +.|-+|+....+-+
T Consensus 432 vdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~---G~~DvLVGINLLRE 508 (663)
T COG0556 432 VDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL---GEFDVLVGINLLRE 508 (663)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc---CCccEEEeehhhhc
Confidence 4444444 45679999999999999999999999999999999999999999999999965 55668999999999
Q ss_pred ccCcccCCEEEEecCC-----CChhhHHHHHhhhhccCCCCcEEEEEEecCCCHHHHHHHHHHH
Q 000496 690 GINLATADTVIIYDSD-----WNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (1462)
Q Consensus 690 GINL~~Ad~VIi~D~d-----WNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~~~k 748 (1462)
||+|+.+..|.|+|-| -+-...+|-||||-|--.. .|..|-=..-+|+++.|-+...+
T Consensus 509 GLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~iT~sM~~Ai~ET~RR 571 (663)
T COG0556 509 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG-KVILYADKITDSMQKAIDETERR 571 (663)
T ss_pred cCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCC-eEEEEchhhhHHHHHHHHHHHHH
Confidence 9999999999999998 4778899999999995444 35444444445677766654443
No 138
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.81 E-value=4.4e-08 Score=112.20 Aligned_cols=238 Identities=21% Similarity=0.255 Sum_probs=147.6
Q ss_pred CCCC-CCCCCCCCHHHHHHHHHHHHhhc------cCCcEEEEecCCCchHHHHHHHHHHHHhCCCC-cEEEEEcchhHHH
Q 000496 276 HSPE-FLSGGSLHPYQLEGLNFLRFSWS------KQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTLRN 347 (1462)
Q Consensus 276 ~~P~-~~~g~~LrpyQlegvnwL~~~~~------~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~-p~LIVvP~sll~q 347 (1462)
..|. .+..+.|-.-|+|+|-+..+.+. .+.+.+|+|.+|.||-.|..++|...+..+.+ ++-|-+...|...
T Consensus 27 ~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~D 106 (303)
T PF13872_consen 27 HLPEEVIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYD 106 (303)
T ss_pred CCCHHHHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhH
Confidence 4444 34568899999999998876665 36778999999999999999999887777665 5555555677777
Q ss_pred HHHHHHHHCCC-CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh-----
Q 000496 348 WEREFATWAPQ-MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS----- 421 (1462)
Q Consensus 348 W~~E~~k~~P~-l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~----- 421 (1462)
-.|.+....-. +.+..+.. + +.+ .....+..|+.+||..+....
T Consensus 107 a~RDl~DIG~~~i~v~~l~~------------~------------~~~------~~~~~~~GvlF~TYs~L~~~~~~~~~ 156 (303)
T PF13872_consen 107 AERDLRDIGADNIPVHPLNK------------F------------KYG------DIIRLKEGVLFSTYSTLISESQSGGK 156 (303)
T ss_pred HHHHHHHhCCCcccceechh------------h------------ccC------cCCCCCCCccchhHHHHHhHHhccCC
Confidence 77777765421 11111110 0 000 001246679999999997763
Q ss_pred --cccCC-Ccc------eeEecccccccCCcch------HHHHHHHhc----cccceEeeccccccCCHHHHH--HHHHh
Q 000496 422 --ASLKP-IKW------QCMIVDEGHRLKNKDS------KLFSSLKQY----STRHRVLLTGTPLQNNLDELF--MLMHF 480 (1462)
Q Consensus 422 --~~L~~-i~w------~~VIVDEAHrlKN~~S------k~~~~l~~l----~~~~rLLLTGTPlqNnl~EL~--sLL~f 480 (1462)
..|.. +.| .+||+||||+.||..+ +...++..+ ...+.+..|||.... +..|- .-|.+
T Consensus 157 ~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~NmaYm~RLGL 235 (303)
T PF13872_consen 157 YRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNMAYMSRLGL 235 (303)
T ss_pred ccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-Cceeeeeeeccc
Confidence 22222 234 3899999999999755 555665544 344678899998632 22221 11111
Q ss_pred hc-CCCCCChHHHHHHHhhhhhHHHHHHHHHhh--chhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHH
Q 000496 481 LD-AGKFGSLEEFQEEFKDINQEEQISRLHRML--APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKA 550 (1462)
Q Consensus 481 L~-p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL--~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~ 550 (1462)
-. ...|.++.+|.+....-. ...++-+...| ...+++|.. ++-.....++.++|++.|.+.|+.
T Consensus 236 WG~gtpf~~~~~f~~a~~~gG-v~amE~vA~dlKa~G~yiaR~L-----Sf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 236 WGPGTPFPDFDDFLEAMEKGG-VGAMEMVAMDLKARGMYIARQL-----SFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred cCCCCCCCCHHHHHHHHHhcC-chHHHHHHHHHHhcchheeeec-----ccCCceEEEEEecCCHHHHHHhcC
Confidence 11 124778888877765421 11122222212 223444432 344567789999999999999964
No 139
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.80 E-value=2.4e-07 Score=118.60 Aligned_cols=72 Identities=31% Similarity=0.494 Sum_probs=59.8
Q ss_pred CCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEE-----ecCC---C---ChhhHHHHHh
Q 000496 648 KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-----YDSD---W---NPHADLQAMA 716 (1462)
Q Consensus 648 gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi-----~D~d---W---NP~~d~QAig 716 (1462)
.|.+..-+.+++..+|...-+.|.+ +.+-+|+||...+-|+||+ |++||| |||. | +|...+|.+|
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~---g~iqvlvstatlawgvnlp-ahtViikgtqvy~pekg~w~elsp~dv~qmlg 682 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFAD---GHIQVLVSTATLAWGVNLP-AHTVIIKGTQVYDPEKGRWTELSPLDVMQMLG 682 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhc---CceeEEEeehhhhhhcCCC-cceEEecCccccCcccCccccCCHHHHHHHHh
Confidence 4678888999999999999999965 4455899999999999998 567776 6664 4 5899999999
Q ss_pred hhhccCC
Q 000496 717 RAHRLGQ 723 (1462)
Q Consensus 717 RahRiGQ 723 (1462)
|++|.+-
T Consensus 683 ragrp~~ 689 (1674)
T KOG0951|consen 683 RAGRPQY 689 (1674)
T ss_pred hcCCCcc
Confidence 9999763
No 140
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.79 E-value=1.2e-09 Score=118.89 Aligned_cols=62 Identities=39% Similarity=0.867 Sum_probs=55.2
Q ss_pred hhhhhhhccccccccccccCCCCC---eeecCCCCCccccccCCCCCCCCCCCCCCCCccCCCCC
Q 000496 39 EKFERIVRIDAKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN 100 (1462)
Q Consensus 39 ~~~~~~~~~~~~~~~C~~C~~~g~---ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~~~~ 100 (1462)
..++++-|.+-.+.+|.+||.+.+ ||+||.|+|+||++||.|||..+|.|.|.|..|...+.
T Consensus 269 ~avk~yrwqcieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~~~ 333 (336)
T KOG1244|consen 269 AAVKTYRWQCIECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEELK 333 (336)
T ss_pred HHHHhheeeeeecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHHHh
Confidence 456677888999999999998654 99999999999999999999999999999999986543
No 141
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.76 E-value=2.5e-07 Score=120.07 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=35.9
Q ss_pred hhchHHHHHHHHHHHHHHc---------CCeEEEEecchhhHHHHHHHHHh
Q 000496 605 ESSGKLQLLDKMMVKLKEQ---------GHRVLIYSQFQHMLDLLEDYLTF 646 (1462)
Q Consensus 605 ~~SgKl~~L~klL~~l~~~---------g~KVLIFSq~~~~ldiLed~L~~ 646 (1462)
+..+|+..|.++|.++... +.+|||||++.++...|.++|..
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 4789999999999886554 46899999999999999999965
No 142
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.70 E-value=1.7e-07 Score=117.30 Aligned_cols=161 Identities=19% Similarity=0.280 Sum_probs=109.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHH-HHHHHHH
Q 000496 277 SPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW-EREFATW 355 (1462)
Q Consensus 277 ~P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW-~~E~~k~ 355 (1462)
.|...-+.+|-.+|.+++--| ..|..+++|.-+-.|||+.|=..++.- ..+..+++.-.|...|.|. -++|+.-
T Consensus 289 e~a~~~pFelD~FQk~Ai~~l----erg~SVFVAAHTSAGKTvVAEYAiala-q~h~TR~iYTSPIKALSNQKfRDFk~t 363 (1248)
T KOG0947|consen 289 EMALIYPFELDTFQKEAIYHL----ERGDSVFVAAHTSAGKTVVAEYAIALA-QKHMTRTIYTSPIKALSNQKFRDFKET 363 (1248)
T ss_pred hHHhhCCCCccHHHHHHHHHH----HcCCeEEEEecCCCCcchHHHHHHHHH-HhhccceEecchhhhhccchHHHHHHh
Confidence 343444578999999998666 889999999999999999974433322 2233478888997777654 6788776
Q ss_pred CCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----hcccCCCccee
Q 000496 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKWQC 431 (1462)
Q Consensus 356 ~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d----~~~L~~i~w~~ 431 (1462)
+.+.. +++|+..- ......+|+|-|+++.. ...++.+.|
T Consensus 364 F~Dvg--LlTGDvqi---------------------------------nPeAsCLIMTTEILRsMLYrgadliRDvE~-- 406 (1248)
T KOG0947|consen 364 FGDVG--LLTGDVQI---------------------------------NPEASCLIMTTEILRSMLYRGADLIRDVEF-- 406 (1248)
T ss_pred ccccc--eeecceee---------------------------------CCCcceEeehHHHHHHHHhcccchhhccce--
Confidence 65555 55665432 23556899999988763 444555555
Q ss_pred EecccccccCCcch-HHHHHHHhccccc--eEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhh
Q 000496 432 MIVDEGHRLKNKDS-KLFSSLKQYSTRH--RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI 499 (1462)
Q Consensus 432 VIVDEAHrlKN~~S-k~~~~l~~l~~~~--rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~ 499 (1462)
||+||+|++-+... -.+..+.-+-.+| .++||||- ++..+|..|.+..
T Consensus 407 VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATV--------------------PN~~EFA~WIGRt 457 (1248)
T KOG0947|consen 407 VIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATV--------------------PNTLEFADWIGRT 457 (1248)
T ss_pred EEEeeeeecccccccccceeeeeeccccceEEEEeccC--------------------CChHHHHHHhhhc
Confidence 99999999965332 3344444444444 48999993 3556677777643
No 143
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.68 E-value=1.7e-06 Score=110.12 Aligned_cols=127 Identities=17% Similarity=0.234 Sum_probs=88.6
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcch-hHHHHHHHHHHHCC-----
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWAP----- 357 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~s-ll~qW~~E~~k~~P----- 357 (1462)
..+...|.- |.+... .|...-+..++|+|||.-.+.+..++...+ +..+||+|+. ++.|-.+-+.++.+
T Consensus 81 ~~~ws~QR~---WakR~~-rg~SFaiiAPTGvGKTTfg~~~sl~~a~kg-kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~ 155 (1187)
T COG1110 81 FRPWSAQRV---WAKRLV-RGKSFAIIAPTGVGKTTFGLLMSLYLAKKG-KRVYIIVPTTTLVRQVYERLKKFAEDAGSL 155 (1187)
T ss_pred CCchHHHHH---HHHHHH-cCCceEEEcCCCCchhHHHHHHHHHHHhcC-CeEEEEecCHHHHHHHHHHHHHHHhhcCCc
Confidence 356667776 554444 455544445999999976665555555444 6899999984 55777888888873
Q ss_pred CCeEEEEEcChhHHH--HHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEecc
Q 000496 358 QMNVVMYVGTSQARN--IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1462)
Q Consensus 358 ~l~vvvy~G~~~~R~--~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVD 435 (1462)
...++ ||+.-..++ .+.+ +.....|||+|||-..+.+....|.+++|++|+||
T Consensus 156 ~~~~~-yh~~l~~~ekee~le------------------------~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVD 210 (1187)
T COG1110 156 DVLVV-YHSALPTKEKEEALE------------------------RIESGDFDILITTSQFLSKRFEELSKLKFDFIFVD 210 (1187)
T ss_pred ceeee-eccccchHHHHHHHH------------------------HHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEc
Confidence 33344 888633322 1111 01236899999999999999999999999999999
Q ss_pred ccccc
Q 000496 436 EGHRL 440 (1462)
Q Consensus 436 EAHrl 440 (1462)
.+.-+
T Consensus 211 DVDA~ 215 (1187)
T COG1110 211 DVDAI 215 (1187)
T ss_pred cHHHH
Confidence 98754
No 144
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.66 E-value=2.2e-06 Score=109.57 Aligned_cols=373 Identities=19% Similarity=0.175 Sum_probs=202.2
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCCCCeEE
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vv 362 (1462)
..|-+-|..+++-+..........+|.--+|+|||=.-+.++...+..+ +-+||+||. ++.+|-...|+..+. .++.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-kqvLvLVPEI~Ltpq~~~rf~~rFg-~~v~ 274 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-KQVLVLVPEIALTPQLLARFKARFG-AKVA 274 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC-CEEEEEeccccchHHHHHHHHHHhC-CChh
Confidence 4688899999998876654456789999999999998888888887765 589999996 899998888888774 8888
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEeccccccc--
Q 000496 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL-- 440 (1462)
Q Consensus 363 vy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEAHrl-- 440 (1462)
++|+.-...+....+.- -..+...|||-|...+-.-.. +-.+|||||=|.-
T Consensus 275 vlHS~Ls~~er~~~W~~----------------------~~~G~~~vVIGtRSAlF~Pf~-----~LGLIIvDEEHD~sY 327 (730)
T COG1198 275 VLHSGLSPGERYRVWRR----------------------ARRGEARVVIGTRSALFLPFK-----NLGLIIVDEEHDSSY 327 (730)
T ss_pred hhcccCChHHHHHHHHH----------------------HhcCCceEEEEechhhcCchh-----hccEEEEeccccccc
Confidence 88876555443332210 012456688887766532222 3468999999975
Q ss_pred CCcchHHH-----HHHH-hccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhch
Q 000496 441 KNKDSKLF-----SSLK-QYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1462)
Q Consensus 441 KN~~Sk~~-----~~l~-~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~~~~~~~i~~L~~lL~p 514 (1462)
|..++-.+ ..++ ....--.+|-|||| +++-+++. ... .
T Consensus 328 Kq~~~prYhARdvA~~Ra~~~~~pvvLgSATP---SLES~~~~---~~g------------------------------~ 371 (730)
T COG1198 328 KQEDGPRYHARDVAVLRAKKENAPVVLGSATP---SLESYANA---ESG------------------------------K 371 (730)
T ss_pred cCCcCCCcCHHHHHHHHHHHhCCCEEEecCCC---CHHHHHhh---hcC------------------------------c
Confidence 33332111 1111 22234568889999 11111111 000 0
Q ss_pred hhhhhhHhhHh-hcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHH----HHHHHHHHhCCcccccCC
Q 000496 515 HLLRRVKKDVM-KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLIN----VVMELRKLCCHPYMLEGV 589 (1462)
Q Consensus 515 ~~LRR~K~dV~-~~LPpk~e~iv~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~n----il~~LRk~c~hP~L~~~~ 589 (1462)
+.+-+++.-.. ..+|......+.-+....-..+-..+++.....+.++...- -++| .-.-+.+.|.|..-.+
T Consensus 372 y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~l-lflnRRGys~~l~C~~Cg~v~~Cp-- 448 (730)
T COG1198 372 YKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVL-LFLNRRGYAPLLLCRDCGYIAECP-- 448 (730)
T ss_pred eEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEE-EEEccCCccceeecccCCCcccCC--
Confidence 11101111111 11332222211111111100011222222233333221110 0000 0001233444432221
Q ss_pred CCCcccchHHHHHHhhhchHHHH-----HHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHh--cCCeEEEEecCCCHHH
Q 000496 590 EPDIEDTNESFKQLLESSGKLQL-----LDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGGAE 662 (1462)
Q Consensus 590 e~~~~~~~~~~~~li~~SgKl~~-----L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~--~gi~~~rIdGst~~~e 662 (1462)
..+..+ .+-...++|.- -..+-..+-+-|...|++.-. -.+.+++.|.. -+.++.|+|+.++...
T Consensus 449 -----~Cd~~l-t~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~--GterieeeL~~~FP~~rv~r~d~Dtt~~k 520 (730)
T COG1198 449 -----NCDSPL-TLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGP--GTERIEEELKRLFPGARIIRIDSDTTRRK 520 (730)
T ss_pred -----CCCcce-EEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecc--cHHHHHHHHHHHCCCCcEEEEccccccch
Confidence 111110 00000000000 000000011123444555432 23445555533 3789999999987543
Q ss_pred --HHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCCC------------ChhhHHHHHhhhhccCCCCcEE
Q 000496 663 --RQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------------NPHADLQAMARAHRLGQTNKVM 728 (1462)
Q Consensus 663 --Rq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~dW------------NP~~d~QAigRahRiGQ~k~V~ 728 (1462)
-+.+++.|.++..+ |||.|....-|.|++....|.++|.|- ..+.+.|..||++|-+-.-.|.
T Consensus 521 ~~~~~~l~~~~~ge~d---ILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~Vv 597 (730)
T COG1198 521 GALEDLLDQFANGEAD---ILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVV 597 (730)
T ss_pred hhHHHHHHHHhCCCCC---eeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEE
Confidence 46789999876665 899999999999999999998887762 2466789999999987777776
Q ss_pred EEEEecC
Q 000496 729 IFRLITR 735 (1462)
Q Consensus 729 VyrLvt~ 735 (1462)
|--+...
T Consensus 598 IQT~~P~ 604 (730)
T COG1198 598 IQTYNPD 604 (730)
T ss_pred EEeCCCC
Confidence 6544433
No 145
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.66 E-value=1.5e-06 Score=111.34 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=67.7
Q ss_pred hchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCC-HHHHHHHHHHHhccCCCCceEEeec
Q 000496 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVG-GAERQIRIDRFNAKNSSRFCFLLST 684 (1462)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~-~~eRq~~Id~Fn~~~s~~fvfLlST 684 (1462)
...|+..+.+-+..+.+.|..|||-+..+..-+.|...|...|+++..+..... .+.-..+|.+ ++..+ .+-|+|
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~G--~VTIAT 481 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRKG--SITIAT 481 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCCC--cEEEec
Confidence 456888888888888999999999999999999999999999999999999743 2344455654 33333 478999
Q ss_pred cccccccCc
Q 000496 685 RAGGLGINL 693 (1462)
Q Consensus 685 ragg~GINL 693 (1462)
..+|+|.|+
T Consensus 482 NMAGRGTDI 490 (870)
T CHL00122 482 NMAGRGTDI 490 (870)
T ss_pred cccCCCcCe
Confidence 999999765
No 146
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.65 E-value=7.5e-07 Score=116.43 Aligned_cols=74 Identities=19% Similarity=0.201 Sum_probs=58.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHh-CC-CCcEEEEEcc-hhHHHHHHHHHH
Q 000496 281 LSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ER-ISPHLVVAPL-STLRNWEREFAT 354 (1462)
Q Consensus 281 ~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~-~~-~~p~LIVvP~-sll~qW~~E~~k 354 (1462)
++-..+||.|.+.+.-+...+..+++++|-..||+|||+.+|+....... .+ ..+++..+.+ +.+.|-.+|+++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 33345799999999999999999999999999999999998866655444 32 2356666665 788999999988
No 147
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.65 E-value=2e-06 Score=109.95 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=68.7
Q ss_pred hchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecC-CCHHHHHHHHHHHhccCCCCceEEeec
Q 000496 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGK-VGGAERQIRIDRFNAKNSSRFCFLLST 684 (1462)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGs-t~~~eRq~~Id~Fn~~~s~~fvfLlST 684 (1462)
...|+..+.+-+..+.+.|..|||-+..+..-+.|...|...|+++..++.. ...+.-..+|.+ ++..+ .+-|+|
T Consensus 421 ~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~G--aVTIAT 496 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKG--AVTIAT 496 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCC--cEEEec
Confidence 4678999999999999999999999999999999999999999999999997 333344445554 44444 468899
Q ss_pred cccccccCcc
Q 000496 685 RAGGLGINLA 694 (1462)
Q Consensus 685 ragg~GINL~ 694 (1462)
..+|+|-++.
T Consensus 497 NMAGRGTDIk 506 (939)
T PRK12902 497 NMAGRGTDII 506 (939)
T ss_pred cCCCCCcCEe
Confidence 9999996653
No 148
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.65 E-value=5.6e-07 Score=119.94 Aligned_cols=139 Identities=19% Similarity=0.174 Sum_probs=90.7
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhCCCC-cEEEEEcc-hhHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhc
Q 000496 303 KQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFY 380 (1462)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~-p~LIVvP~-sll~qW~~E~~k~~P~l~vvvy~G~~~~R~~i~~~e~~ 380 (1462)
.+.+|++-+-+|+|||++++-++..+...... .+++||-. .|-.|-..+|..+........ ...+...+++.-
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l-- 346 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELL-- 346 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHH--
Confidence 45679999999999999998888777766333 55666664 677888999998875433332 222333333210
Q ss_pred CCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcc----cCCCcceeEecccccccCCcchHHHHHHHh-cc
Q 000496 381 FPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS----LKPIKWQCMIVDEGHRLKNKDSKLFSSLKQ-YS 455 (1462)
Q Consensus 381 ~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~----L~~i~w~~VIVDEAHrlKN~~Sk~~~~l~~-l~ 455 (1462)
....-.|+|||-+.+...... ...-+.-+||+|||||- ....+.+.++. +.
T Consensus 347 ----------------------~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS--Q~G~~~~~~~~~~~ 402 (962)
T COG0610 347 ----------------------EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS--QYGELAKLLKKALK 402 (962)
T ss_pred ----------------------hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc--cccHHHHHHHHHhc
Confidence 001335899998888654322 23345668999999994 34444444443 34
Q ss_pred ccceEeeccccccCC
Q 000496 456 TRHRVLLTGTPLQNN 470 (1462)
Q Consensus 456 ~~~rLLLTGTPlqNn 470 (1462)
...-++.||||+...
T Consensus 403 ~a~~~gFTGTPi~~~ 417 (962)
T COG0610 403 KAIFIGFTGTPIFKE 417 (962)
T ss_pred cceEEEeeCCccccc
Confidence 567799999997654
No 149
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=98.62 E-value=5e-08 Score=86.41 Aligned_cols=44 Identities=59% Similarity=0.902 Sum_probs=39.1
Q ss_pred CccchhhHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccchhh
Q 000496 862 NSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQMVSVEEDD 905 (1462)
Q Consensus 862 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~r~~~~~~~~~~ 905 (1462)
+..+++||++||+++|+++++++...||||||.||||+|...++
T Consensus 20 ~~~~~~yWe~LLr~~ye~~q~e~~~~LGKGKR~RKqV~y~~~~~ 63 (66)
T PF06465_consen 20 ESTDPNYWEKLLRHRYEQQQEEEEKALGKGKRSRKQVNYAEEDD 63 (66)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccc
Confidence 34689999999999999999999999999999999999865443
No 150
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=98.59 E-value=1.8e-08 Score=87.89 Aligned_cols=49 Identities=41% Similarity=0.605 Sum_probs=42.2
Q ss_pred chhhhhhhccCCCCc---eEEEEEecccccccccccccccccc-hHHHHHHHH
Q 000496 193 TVDRILACRGEDDEK---EYLVKYKELSYDECYWEYESDISAF-QPEIERFIK 241 (1462)
Q Consensus 193 ~veRII~~r~~~~~~---eyLVKWk~L~Y~~~TWE~~~~i~~~-~~~i~~f~~ 241 (1462)
+|+|||++|...+.. +|||||+|+||++||||.+..+... +..|++|.+
T Consensus 2 ~Ve~Il~~r~~~~~~~~~~ylVkW~g~~~~~~tWe~~~~l~~~~~~li~~f~~ 54 (55)
T PF00385_consen 2 EVERILDHRVVKGGNKVYEYLVKWKGYPYSENTWEPEENLKNCFPELIEEFEK 54 (55)
T ss_dssp EEEEEEEEEEETTEESEEEEEEEETTSSGGGEEEEEGGGCSSHCHHHHHHHHH
T ss_pred EEEEEEEEEEeCCCcccEEEEEEECCCCCCCCeEeeHHHHhHhhHHHHHHHhC
Confidence 589999999666555 9999999999999999999887654 777999975
No 151
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.57 E-value=4.8e-06 Score=107.55 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=98.3
Q ss_pred hchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeecc
Q 000496 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1462)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTr 685 (1462)
...|+.++.+-+..+.+.|..|||-+..+..-++|..+|..+|+++..+...... .-..+|.+ ++..+ .+-|+|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~-~EAeIVA~--AG~~G--aVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQ-KEAEIVAE--AGQPG--TVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchh-hHHHHHHh--cCCCC--cEEEecc
Confidence 4679999999999999999999999999999999999999999999998876432 22334443 33334 4789999
Q ss_pred ccccccCcc--------cCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEE
Q 000496 686 AGGLGINLA--------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1462)
Q Consensus 686 agg~GINL~--------~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~Vy 730 (1462)
.+|+|.++. ..=+||.-..+=|...+.|..||++|.|..-....|
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 999998875 234788889999999999999999999988665544
No 152
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.52 E-value=9.4e-06 Score=107.18 Aligned_cols=89 Identities=17% Similarity=0.134 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeecccccccc
Q 000496 612 LLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGI 691 (1462)
Q Consensus 612 ~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GI 691 (1462)
.+.+.|..+...+.++||+....+++..+.+.|....++. ...|... .|.+++++|+..+.. +|+.|....+||
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEGV 708 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCCC
Confidence 3444444455567789999888899998888887655544 5556433 356789999874443 788889999999
Q ss_pred Ccc--cCCEEEEecCCC
Q 000496 692 NLA--TADTVIIYDSDW 706 (1462)
Q Consensus 692 NL~--~Ad~VIi~D~dW 706 (1462)
|++ .+..|||.-.|+
T Consensus 709 D~p~~~~~~viI~kLPF 725 (820)
T PRK07246 709 DFVQADRMIEVITRLPF 725 (820)
T ss_pred CCCCCCeEEEEEecCCC
Confidence 996 456677776553
No 153
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.50 E-value=3.4e-08 Score=119.98 Aligned_cols=49 Identities=45% Similarity=1.065 Sum_probs=44.1
Q ss_pred cccccccCCCCCe---eecCCCCCccccccCCCCC--CCCCCCCCCCCccCCCC
Q 000496 51 DDSCQACGESENL---MSCDTCTYAYHAKCLVPPL--KAPPSGSWRCPECVSPL 99 (1462)
Q Consensus 51 ~~~C~~C~~~g~l---l~Cd~C~~~~H~~Cl~Ppl--~~~p~~~W~C~~C~~~~ 99 (1462)
+++|..|++.|.. +|||+|+++||+.||.||+ ..+|.|.|+|++|....
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~ 306 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKS 306 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeee
Confidence 5599999999875 9999999999999999994 67999999999998643
No 154
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.49 E-value=1.1e-05 Score=105.23 Aligned_cols=104 Identities=18% Similarity=0.192 Sum_probs=76.8
Q ss_pred HHcCCeEEEEecchhhHHHHHHHHHhcCCe-EEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCccc--CC
Q 000496 621 KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQ-YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT--AD 697 (1462)
Q Consensus 621 ~~~g~KVLIFSq~~~~ldiLed~L~~~gi~-~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~--Ad 697 (1462)
...+.++|||...-.++..+.+.|...... .....|..+ +...+++|.+...+ .|++.+....+|||++. +.
T Consensus 476 ~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~ 550 (654)
T COG1199 476 KASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDALR 550 (654)
T ss_pred hhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCee
Confidence 344558999999999999999999876653 344445443 34899999887665 48999999999999984 68
Q ss_pred EEEEecCCCC-hh-----------------------------hHHHHHhhhhccCCCCcEEE
Q 000496 698 TVIIYDSDWN-PH-----------------------------ADLQAMARAHRLGQTNKVMI 729 (1462)
Q Consensus 698 ~VIi~D~dWN-P~-----------------------------~d~QAigRahRiGQ~k~V~V 729 (1462)
.|||.-.||= |. ...|++||+.|--+.+-|.|
T Consensus 551 ~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 551 LVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 8999877773 11 22699999999555554443
No 155
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.49 E-value=3.8e-06 Score=109.65 Aligned_cols=157 Identities=19% Similarity=0.246 Sum_probs=104.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCCCC-
Q 000496 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM- 359 (1462)
Q Consensus 282 ~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l- 359 (1462)
-+.+|-|+|.+++.-| ..+.+++++..+|.|||+.+-.++..-...+. .+.-..|. ++-.|=.++|..-+.+.
T Consensus 116 ~~F~LD~fQ~~a~~~L----er~esVlV~ApTssGKTvVaeyAi~~al~~~q-rviYTsPIKALsNQKyrdl~~~fgdv~ 190 (1041)
T COG4581 116 YPFELDPFQQEAIAIL----ERGESVLVCAPTSSGKTVVAEYAIALALRDGQ-RVIYTSPIKALSNQKYRDLLAKFGDVA 190 (1041)
T ss_pred CCCCcCHHHHHHHHHH----hCCCcEEEEccCCCCcchHHHHHHHHHHHcCC-ceEeccchhhhhhhHHHHHHHHhhhhh
Confidence 3578999999998766 88999999999999999998777665554443 58899996 55555567765544322
Q ss_pred -eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----hcccCCCcceeEec
Q 000496 360 -NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKWQCMIV 434 (1462)
Q Consensus 360 -~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d----~~~L~~i~w~~VIV 434 (1462)
-+-+++|+.. -.....++|+|-|.++.- ...+..+. .||+
T Consensus 191 ~~vGL~TGDv~---------------------------------IN~~A~clvMTTEILRnMlyrg~~~~~~i~--~ViF 235 (1041)
T COG4581 191 DMVGLMTGDVS---------------------------------INPDAPCLVMTTEILRNMLYRGSESLRDIE--WVVF 235 (1041)
T ss_pred hhccceeccee---------------------------------eCCCCceEEeeHHHHHHHhccCcccccccc--eEEE
Confidence 1223334321 123456777777887653 34455555 4999
Q ss_pred ccccccCCcch-HHHHHH-Hhcccc-ceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhh
Q 000496 435 DEGHRLKNKDS-KLFSSL-KQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD 498 (1462)
Q Consensus 435 DEAHrlKN~~S-k~~~~l-~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~ 498 (1462)
||.|.+..... -.+..+ ..+... ..++||||- ++..+|.+|+..
T Consensus 236 DEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv--------------------~N~~EF~~Wi~~ 282 (1041)
T COG4581 236 DEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATV--------------------PNAEEFAEWIQR 282 (1041)
T ss_pred EeeeeccccccchhHHHHHHhcCCCCcEEEEeCCC--------------------CCHHHHHHHHHh
Confidence 99999975443 233333 333333 678999993 577788888864
No 156
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.45 E-value=0.00026 Score=95.36 Aligned_cols=90 Identities=14% Similarity=0.191 Sum_probs=64.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHH--HHHH---HHH
Q 000496 280 FLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN--WERE---FAT 354 (1462)
Q Consensus 280 ~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~q--W~~E---~~k 354 (1462)
.+.+.+.||-|.+-++.+...+..+..+++-..+|+|||+.-+.-+........+|++|.+++..|.+ +.++ +++
T Consensus 252 ~~~~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~ 331 (928)
T PRK08074 252 AMPKYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEKDIPLLQK 331 (928)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHhhHHHHHH
Confidence 44567899999999999988888888888999999999987654443333333458999999865544 3444 344
Q ss_pred HCC-CCeEEEEEcChh
Q 000496 355 WAP-QMNVVMYVGTSQ 369 (1462)
Q Consensus 355 ~~P-~l~vvvy~G~~~ 369 (1462)
.++ .+++++..|..+
T Consensus 332 ~~~~~~~~~~lKGr~n 347 (928)
T PRK08074 332 IFPFPVEAALLKGRSH 347 (928)
T ss_pred HcCCCceEEEEEcccc
Confidence 443 567777776543
No 157
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.43 E-value=1.5e-05 Score=98.23 Aligned_cols=243 Identities=17% Similarity=0.236 Sum_probs=135.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhcc------CCcEEEEecCCCchHHHHHHHHHHHHhCCCCcE-EEEEcchhHHHH
Q 000496 276 HSPEFLSGGSLHPYQLEGLNFLRFSWSK------QTHVILADEMGLGKTIQSIAFLASLFGERISPH-LVVAPLSTLRNW 348 (1462)
Q Consensus 276 ~~P~~~~g~~LrpyQlegvnwL~~~~~~------~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~-LIVvP~sll~qW 348 (1462)
..|. +..+-|.--|+++|.+..+.... .-+.+|.|..|.||-.+...+|..-+-.+.++. .|-|...+-..-
T Consensus 256 alP~-i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDA 334 (1300)
T KOG1513|consen 256 ALPS-IDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDA 334 (1300)
T ss_pred eccc-CcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccch
Confidence 4455 55678999999999988655432 335688999999987766555554444454544 455666666667
Q ss_pred HHHHHHHC-CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc-----
Q 000496 349 EREFATWA-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----- 422 (1462)
Q Consensus 349 ~~E~~k~~-P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~----- 422 (1462)
.+.+.... +.+.|..+. + |-+.. +....+...+-.|+++||..+..+..
T Consensus 335 ERDL~DigA~~I~V~aln--K----------~KYak-------------Iss~en~n~krGViFaTYtaLIGEs~~~~~k 389 (1300)
T KOG1513|consen 335 ERDLRDIGATGIAVHALN--K----------FKYAK-------------ISSKENTNTKRGVIFATYTALIGESQGKGGK 389 (1300)
T ss_pred hhchhhcCCCCccceehh--h----------ccccc-------------ccccccCCccceeEEEeeHhhhhhccccCch
Confidence 77776654 222222211 1 00000 11112234566799999999866532
Q ss_pred ---ccCC-Ccc------eeEecccccccCC-------cchHHHHHHHhc----cccceEeeccccccCCHHHHHHHHHhh
Q 000496 423 ---SLKP-IKW------QCMIVDEGHRLKN-------KDSKLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFL 481 (1462)
Q Consensus 423 ---~L~~-i~w------~~VIVDEAHrlKN-------~~Sk~~~~l~~l----~~~~rLLLTGTPlqNnl~EL~sLL~fL 481 (1462)
.|.. +.| .+||+||||+.|| ..++..+.+..+ ...+.+..|||-... =-++..+.
T Consensus 390 yrtR~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAsE----PrNMaYM~ 465 (1300)
T KOG1513|consen 390 YRTRFRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGASE----PRNMAYMV 465 (1300)
T ss_pred HHHHHHHHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCCC----cchhhhhh
Confidence 1211 244 4899999999998 345666666554 445667888885322 12222223
Q ss_pred cC------CCCCChHHHHHHHhhhh--hHHHHHHHHHhhchhhhhhhHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHH
Q 000496 482 DA------GKFGSLEEFQEEFKDIN--QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILT 553 (1462)
Q Consensus 482 ~p------~~f~~~~~F~e~f~~~~--~~~~i~~L~~lL~p~~LRR~K~dV~~~LPpk~e~iv~v~ls~~Qk~~Y~~il~ 553 (1462)
.. ..|+++.+|........ ..+.+ ...-.++...+-|- ..+......+-.|+|+++=++.|.....
T Consensus 466 RLGlWGegtaf~eF~eFi~AvEkRGvGAMEIV-AMDMK~rGmYiARQ-----LSFkgVsFrieEv~ls~eF~k~Yn~a~~ 539 (1300)
T KOG1513|consen 466 RLGLWGEGTAFPEFEEFIHAVEKRGVGAMEIV-AMDMKLRGMYIARQ-----LSFKGVSFRIEEVPLSKEFRKVYNRAAE 539 (1300)
T ss_pred hhccccCCCcCccHHHHHHHHHhcCCceeeee-ehhhhhhhhhhhhh-----ccccCceEEEEecccCHHHHHHHHHHHH
Confidence 33 33556666654443211 00111 11111222222221 1344556778889999999999976544
Q ss_pred H
Q 000496 554 R 554 (1462)
Q Consensus 554 k 554 (1462)
-
T Consensus 540 L 540 (1300)
T KOG1513|consen 540 L 540 (1300)
T ss_pred H
Confidence 3
No 158
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.38 E-value=8.2e-06 Score=89.49 Aligned_cols=45 Identities=29% Similarity=0.440 Sum_probs=43.0
Q ss_pred EeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCC
Q 000496 681 LLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1462)
Q Consensus 681 LlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k 725 (1462)
|++|...|.|+++...+.||.||.+-.+..|+.+.+||+|.|.+-
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 789999999999999999999999999999999999999999764
No 159
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.32 E-value=0.00013 Score=93.01 Aligned_cols=79 Identities=15% Similarity=0.084 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHH-HHHhCCCCcEEEEEcc-hhHHHHHHHHHHHC-----CCCeEE
Q 000496 290 QLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGERISPHLVVAPL-STLRNWEREFATWA-----PQMNVV 362 (1462)
Q Consensus 290 QlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~-~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~-----P~l~vv 362 (1462)
|.+-+.++...+..+...++-..+|+|||+..+.-+. ++......++||++|+ .+..|+.+++..+. ..++++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~ 81 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAG 81 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEE
Confidence 7777888888888888899999999999988665543 3332234599999997 67788888876554 246677
Q ss_pred EEEcCh
Q 000496 363 MYVGTS 368 (1462)
Q Consensus 363 vy~G~~ 368 (1462)
+..|..
T Consensus 82 ~lkGr~ 87 (636)
T TIGR03117 82 FFPGSQ 87 (636)
T ss_pred EEECCc
Confidence 666643
No 160
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.27 E-value=9.2e-06 Score=105.89 Aligned_cols=143 Identities=20% Similarity=0.337 Sum_probs=90.7
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhC-CCCcEEEEEcchhHHH-HH---------HHHHHHCCC--CeEEEEEcChh--
Q 000496 305 THVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTLRN-WE---------REFATWAPQ--MNVVMYVGTSQ-- 369 (1462)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L~~~-~~~p~LIVvP~sll~q-W~---------~E~~k~~P~--l~vvvy~G~~~-- 369 (1462)
.+..+.++||+|||.+++..+.+|... +...+|||||...+.. .. ..|...+++ +...+|.+.+.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 467899999999999999999999876 5569999999744422 22 223333322 34445543321
Q ss_pred -HH----HHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc--c------cC--CCcce----
Q 000496 370 -AR----NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--S------LK--PIKWQ---- 430 (1462)
Q Consensus 370 -~R----~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~--~------L~--~i~w~---- 430 (1462)
.| ..++.+ +..........+|+|+|.+++.++.. . +. ...|+
T Consensus 140 ~gr~~~~~~i~~F-------------------a~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~ 200 (986)
T PRK15483 140 SGRKNFPAQLSNF-------------------VKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAA 200 (986)
T ss_pred cccccChHHHHHH-------------------HhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHh
Confidence 11 112211 00011112356899999999876421 1 11 13443
Q ss_pred ---eEecccccccCCcchHHHHHHHhccccceEeeccccc
Q 000496 431 ---CMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPL 467 (1462)
Q Consensus 431 ---~VIVDEAHrlKN~~Sk~~~~l~~l~~~~rLLLTGTPl 467 (1462)
+||+||+|++.. ..+...++..+...+.|.-|||--
T Consensus 201 ~~PivIiDEPh~~~~-~~k~~~~i~~lnpl~~lrysAT~~ 239 (986)
T PRK15483 201 TRPVVIIDEPHRFPR-DNKFYQAIEALKPQMIIRFGATFP 239 (986)
T ss_pred CCCEEEEECCCCCCc-chHHHHHHHhcCcccEEEEeeecC
Confidence 799999999965 345668889999999999999963
No 161
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.24 E-value=6.4e-06 Score=101.42 Aligned_cols=152 Identities=19% Similarity=0.297 Sum_probs=100.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHH-HHHHHHHhCCCCcEEEEEcchhHH-HHHHHHHHHCCCCeE
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERISPHLVVAPLSTLR-NWEREFATWAPQMNV 361 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~L~~~~~~p~LIVvP~sll~-qW~~E~~k~~P~l~v 361 (1462)
.+|-|+|..++.-+ .++..+++..-+-.|||+.|= |++..|+.. .+++.-.|-..|. |=.|||..-+.+.
T Consensus 128 F~LDpFQ~~aI~Ci----dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k--QRVIYTSPIKALSNQKYREl~~EF~DV-- 199 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCI----DRGESVLVSAHTSAGKTVVAEYAIAMSLREK--QRVIYTSPIKALSNQKYRELLEEFKDV-- 199 (1041)
T ss_pred cccCchHhhhhhhh----cCCceEEEEeecCCCcchHHHHHHHHHHHhc--CeEEeeChhhhhcchhHHHHHHHhccc--
Confidence 57999999997644 889999999999999999974 555555544 3788888865554 4567776544332
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----hcccCCCcceeEecccc
Q 000496 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKWQCMIVDEG 437 (1462)
Q Consensus 362 vvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d----~~~L~~i~w~~VIVDEA 437 (1462)
-..+|+-. -......+|+|-+.++.- ...++.+.| ||+||.
T Consensus 200 GLMTGDVT---------------------------------InP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEI 244 (1041)
T KOG0948|consen 200 GLMTGDVT---------------------------------INPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEI 244 (1041)
T ss_pred ceeeccee---------------------------------eCCCCceeeeHHHHHHHHHhccchHhheeee--EEeeee
Confidence 22333321 013455788888888653 456677777 999999
Q ss_pred cccCCcchHH-H-HHHHhcc-ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhh
Q 000496 438 HRLKNKDSKL-F-SSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD 498 (1462)
Q Consensus 438 HrlKN~~Sk~-~-~~l~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~e~f~~ 498 (1462)
|+++...... + ..+.-+. .-+-+.||||- ++..+|.+|...
T Consensus 245 HYMRDkERGVVWEETIIllP~~vr~VFLSATi--------------------PNA~qFAeWI~~ 288 (1041)
T KOG0948|consen 245 HYMRDKERGVVWEETIILLPDNVRFVFLSATI--------------------PNARQFAEWICH 288 (1041)
T ss_pred hhccccccceeeeeeEEeccccceEEEEeccC--------------------CCHHHHHHHHHH
Confidence 9998644311 1 1111222 33457899993 466778888764
No 162
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.22 E-value=9e-05 Score=94.48 Aligned_cols=114 Identities=10% Similarity=0.283 Sum_probs=83.5
Q ss_pred chHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccc
Q 000496 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1462)
Q Consensus 607 SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTra 686 (1462)
+....+...|+..|. .|++|-|||....+.+++++++...+.++..++|..+..+. +.+ ..+-+++=|.+
T Consensus 266 ~~~~tF~~~L~~~L~-~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W-----~~~~VviYT~~ 335 (824)
T PF02399_consen 266 NDETTFFSELLARLN-AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW-----KKYDVVIYTPV 335 (824)
T ss_pred cchhhHHHHHHHHHh-CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc-----cceeEEEEece
Confidence 344556666776664 69999999999999999999999999999999887765522 222 33447888888
Q ss_pred cccccCccc--CCEEEEe--cCCCChhh--HHHHHhhhhccCCCCcEEEEE
Q 000496 687 GGLGINLAT--ADTVIIY--DSDWNPHA--DLQAMARAHRLGQTNKVMIFR 731 (1462)
Q Consensus 687 gg~GINL~~--Ad~VIi~--D~dWNP~~--d~QAigRahRiGQ~k~V~Vyr 731 (1462)
...|+++-. .|.|..| .....|.. ..|.+||+..+... ++.||.
T Consensus 336 itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~~-ei~v~~ 385 (824)
T PF02399_consen 336 ITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLDN-EIYVYI 385 (824)
T ss_pred EEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhccC-eEEEEE
Confidence 889999863 4666666 33344554 59999999998754 455553
No 163
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.21 E-value=0.00027 Score=89.84 Aligned_cols=161 Identities=19% Similarity=0.200 Sum_probs=106.7
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC-CCCcEEEEEcc-hhHHHHHHHHH-HH-CCCCeE
Q 000496 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPL-STLRNWEREFA-TW-APQMNV 361 (1462)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~-~~~p~LIVvP~-sll~qW~~E~~-k~-~P~l~v 361 (1462)
.-.+|.+-+.- ...+..++|...+-.|||...--++...++. ..+-++-|+|. +++.|-..++. +| ++.+..
T Consensus 512 Pd~WQ~elLDs----vDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~r 587 (1330)
T KOG0949|consen 512 PDEWQRELLDS----VDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLR 587 (1330)
T ss_pred CcHHHHHHhhh----hhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCcccc
Confidence 33588876543 4788999999999999999988888776665 45588999996 77777666654 33 222221
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcc---cCC--CcceeEeccc
Q 000496 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS---LKP--IKWQCMIVDE 436 (1462)
Q Consensus 362 vvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~---L~~--i~w~~VIVDE 436 (1462)
.+ .---...++|.. ....++|+||-.+-+..-.-. -.. -+..+||+||
T Consensus 588 g~----sl~g~ltqEYsi-----------------------np~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDE 640 (1330)
T KOG0949|consen 588 GV----SLLGDLTQEYSI-----------------------NPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDE 640 (1330)
T ss_pred ch----hhHhhhhHHhcC-----------------------CchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEech
Confidence 11 111112222211 234678999999877442111 011 1346999999
Q ss_pred ccccCCc-chHHHHHHHhccccceEeeccccccCCHHHHHHHHH
Q 000496 437 GHRLKNK-DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH 479 (1462)
Q Consensus 437 AHrlKN~-~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~sLL~ 479 (1462)
+|.+.|. .+.+...+..+...-.|+|||| ++|+..+..-++
T Consensus 641 VH~iG~~ed~l~~Eqll~li~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 641 VHLIGNEEDGLLWEQLLLLIPCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred hhhccccccchHHHHHHHhcCCCeeEEecc--cCCHHHHHHHHH
Confidence 9999885 5667777777777788999999 577777776666
No 164
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=98.17 E-value=9.9e-07 Score=76.62 Aligned_cols=48 Identities=42% Similarity=0.664 Sum_probs=41.2
Q ss_pred hhhhhhhccCC--CCceEEEEEecccccccccccccccccchHHHHHHHH
Q 000496 194 VDRILACRGED--DEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (1462)
Q Consensus 194 veRII~~r~~~--~~~eyLVKWk~L~Y~~~TWE~~~~i~~~~~~i~~f~~ 241 (1462)
|++||++|... +..+|||||+|++|++||||....+......++.|..
T Consensus 5 ve~Il~~r~~~~~~~~~y~VkW~g~~~~~~tWe~~~~l~~~~~~i~~~~~ 54 (55)
T cd00024 5 VEKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEENLEDCKELIDEFKK 54 (55)
T ss_pred EeeeeeeeecCCCCcEEEEEEECCCCCccCccccHHHhCchHHHHHHHHh
Confidence 59999999766 7889999999999999999998877655677888763
No 165
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.11 E-value=1.1e-06 Score=107.49 Aligned_cols=47 Identities=34% Similarity=0.923 Sum_probs=41.4
Q ss_pred cccccccCCCCC---eeecCCCCCc-cccccCCCCCCCCCCCCCCCCccCC
Q 000496 51 DDSCQACGESEN---LMSCDTCTYA-YHAKCLVPPLKAPPSGSWRCPECVS 97 (1462)
Q Consensus 51 ~~~C~~C~~~g~---ll~Cd~C~~~-~H~~Cl~Ppl~~~p~~~W~C~~C~~ 97 (1462)
..-|.+|...+. ||+||.|..+ ||++||+|+|-.+|-+.|+|+.|..
T Consensus 215 ~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 215 EVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred cccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 345888876543 9999999999 9999999999999999999999985
No 166
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.09 E-value=0.00025 Score=92.58 Aligned_cols=92 Identities=15% Similarity=0.234 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhc-CCeEEEEecCCCHHHHHHHHHHHhcc-CCCCceEEeeccccc
Q 000496 611 QLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFNAK-NSSRFCFLLSTRAGG 688 (1462)
Q Consensus 611 ~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~-gi~~~rIdGst~~~eRq~~Id~Fn~~-~s~~fvfLlSTragg 688 (1462)
..+.+.|..+...+.++|||.....+++.+.+.|... ++. +.+.|. ..|.++++.|.+. ..+.-.+|+.+....
T Consensus 521 ~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~ 596 (697)
T PRK11747 521 AEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFA 596 (697)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEecccc
Confidence 3444555544445556888888888888888888643 333 344553 3578889877642 001113677889999
Q ss_pred cccCccc--CCEEEEecCCC
Q 000496 689 LGINLAT--ADTVIIYDSDW 706 (1462)
Q Consensus 689 ~GINL~~--Ad~VIi~D~dW 706 (1462)
+|||++. +..|||.-.|+
T Consensus 597 EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 597 EGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred ccccCCCCceEEEEEEcCCC
Confidence 9999974 78999988776
No 167
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.03 E-value=3.2e-05 Score=80.08 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=71.1
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcC
Q 000496 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYF 381 (1462)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k~~P~l~vvvy~G~~~~R~~i~~~e~~~ 381 (1462)
.++.-.+|-.-.|.|||...+.-+..-.-....++||++|.-.+. +|+.+...+..+ .++-..-.+
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva---~em~~aL~~~~~-~~~t~~~~~---------- 67 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVA---EEMYEALKGLPV-RFHTNARMR---------- 67 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHH---HHHHHHTTTSSE-EEESTTSS-----------
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHH---HHHHHHHhcCCc-ccCceeeec----------
Confidence 456677899999999999876543322222335999999996663 455555545553 222211100
Q ss_pred CCCchhhhccccCccccccccccccccEEEecHHHHHhh-hcccCCCcceeEecccccccCCcchHHHHH-HHhccc---
Q 000496 382 PKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD-SASLKPIKWQCMIVDEGHRLKNKDSKLFSS-LKQYST--- 456 (1462)
Q Consensus 382 ~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d-~~~L~~i~w~~VIVDEAHrlKN~~Sk~~~~-l~~l~~--- 456 (1462)
.....--|-+++|.++... .......+|++||+||||-. ...|..... +..+..
T Consensus 68 --------------------~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~ 126 (148)
T PF07652_consen 68 --------------------THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGE 126 (148)
T ss_dssp -----------------------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS
T ss_pred --------------------cccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccC
Confidence 0113345777888887553 22334568999999999973 344433332 222221
Q ss_pred cceEeecccc
Q 000496 457 RHRVLLTGTP 466 (1462)
Q Consensus 457 ~~rLLLTGTP 466 (1462)
...+++||||
T Consensus 127 ~~~i~mTATP 136 (148)
T PF07652_consen 127 AKVIFMTATP 136 (148)
T ss_dssp -EEEEEESS-
T ss_pred eeEEEEeCCC
Confidence 2468999999
No 168
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.02 E-value=0.00067 Score=87.30 Aligned_cols=121 Identities=21% Similarity=0.199 Sum_probs=92.4
Q ss_pred hchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeecc
Q 000496 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1462)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTr 685 (1462)
...|+..+.+-+....+.|..|||-+..+..-+.|...|...|++...++..-. .|+.-|-.+ ++..+ .+-++|.
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~-AG~~g--aVTiATN 485 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQ-AGQPG--AVTIATN 485 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhh-cCCCC--ccccccc
Confidence 467899999999999999999999999999999999999999999999988765 343333333 33333 3578999
Q ss_pred ccccccCcc-cCC----------EEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEE
Q 000496 686 AGGLGINLA-TAD----------TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRL 732 (1462)
Q Consensus 686 agg~GINL~-~Ad----------~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrL 732 (1462)
.+|+|-++. ..+ +||--.-.=+-..+.|-.||++|.| ..-...|+|
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG-DpG~S~F~l 542 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG-DPGSSRFYL 542 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC-Ccchhhhhh
Confidence 999999986 333 4555555566667779999999999 333344444
No 169
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.02 E-value=0.0004 Score=90.44 Aligned_cols=128 Identities=20% Similarity=0.282 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHc--CCeEEEEecchhhHHHHHHHHH----hcC---CeEEEEecCCCHHHHHHHHHHHhccCCCCce
Q 000496 609 KLQLLDKMMVKLKEQ--GHRVLIYSQFQHMLDLLEDYLT----FKK---WQYERIDGKVGGAERQIRIDRFNAKNSSRFC 679 (1462)
Q Consensus 609 Kl~~L~klL~~l~~~--g~KVLIFSq~~~~ldiLed~L~----~~g---i~~~rIdGst~~~eRq~~Id~Fn~~~s~~fv 679 (1462)
...++..++..+.+. ...+|||-.-..-+..+.+.|. ... +-...++++++..+.+.+ |+.+..+..-
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RK 472 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRK 472 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcch
Confidence 455566666665443 3589999887776666666664 232 556788999998776655 7778888777
Q ss_pred EEeeccccccccCcccCCEEE--------EecCCC----------ChhhHHHHHhhhhccCCCCcEEEEEEecCCCHHHH
Q 000496 680 FLLSTRAGGLGINLATADTVI--------IYDSDW----------NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEER 741 (1462)
Q Consensus 680 fLlSTragg~GINL~~Ad~VI--------i~D~dW----------NP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~ 741 (1462)
++++|..+..+|.+..+-.|| .||+.- +-++-.||.|||+| ..+-.+|+|+++.-++-.
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~~~~~ 549 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSRYEKL 549 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhhhhhc
Confidence 899999999999998776655 344422 23344677777776 567789999988755543
Q ss_pred H
Q 000496 742 M 742 (1462)
Q Consensus 742 I 742 (1462)
+
T Consensus 550 ~ 550 (924)
T KOG0920|consen 550 M 550 (924)
T ss_pred c
Confidence 3
No 170
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.01 E-value=0.00039 Score=86.32 Aligned_cols=108 Identities=21% Similarity=0.269 Sum_probs=77.8
Q ss_pred eEEEEecchhhHHHHHHHHHhc----CC----eEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCC
Q 000496 626 RVLIYSQFQHMLDLLEDYLTFK----KW----QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATAD 697 (1462)
Q Consensus 626 KVLIFSq~~~~ldiLed~L~~~----gi----~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad 697 (1462)
-+|||=.-....+...+.|... +- -+.-+.|+.+.++..++ |...+.+...+++||+.+...|.+...-
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecceE
Confidence 5888877776666555555432 21 24568999998766544 6665656667899999999999998877
Q ss_pred EEEEecC------CCCh-----------hhHHHHHhhhhccCCCCcEEEEEEecCCCH
Q 000496 698 TVIIYDS------DWNP-----------HADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (1462)
Q Consensus 698 ~VIi~D~------dWNP-----------~~d~QAigRahRiGQ~k~V~VyrLvt~~Ti 738 (1462)
.|| |+ .||| -.-.||..|++|-|.+.+..+|||+++.-+
T Consensus 337 YVV--DsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 337 YVV--DSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred EEE--cCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 664 33 2444 344678888888888999999999998766
No 171
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.99 E-value=4.5e-05 Score=89.34 Aligned_cols=72 Identities=18% Similarity=0.110 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHH-HHHhCCCC----cEEEEEcc-hhHHHHHHHHHHH
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGERIS----PHLVVAPL-STLRNWEREFATW 355 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~-~L~~~~~~----p~LIVvP~-sll~qW~~E~~k~ 355 (1462)
.+.||.|++-+.-+...+..++.+|+-..+|+|||+..+..+. ++...... ++++++++ +.+.+-..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4569999999998888999999999999999999999876654 43433322 77888876 4445555666554
No 172
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.99 E-value=4.5e-05 Score=89.34 Aligned_cols=72 Identities=18% Similarity=0.110 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHH-HHHhCCCC----cEEEEEcc-hhHHHHHHHHHHH
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGERIS----PHLVVAPL-STLRNWEREFATW 355 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~-~L~~~~~~----p~LIVvP~-sll~qW~~E~~k~ 355 (1462)
.+.||.|++-+.-+...+..++.+|+-..+|+|||+..+..+. ++...... ++++++++ +.+.+-..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4569999999998888999999999999999999999876654 43433322 77888876 4445555666554
No 173
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=97.94 E-value=4.6e-06 Score=72.30 Aligned_cols=48 Identities=38% Similarity=0.644 Sum_probs=41.8
Q ss_pred hhhhhhhc-cCCCCceEEEEEecccccccccccccccccchHHHHHHHH
Q 000496 194 VDRILACR-GEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (1462)
Q Consensus 194 veRII~~r-~~~~~~eyLVKWk~L~Y~~~TWE~~~~i~~~~~~i~~f~~ 241 (1462)
|+|||++| ...+..+|||||+|++|.++||+....+..+...+.+|..
T Consensus 4 v~~Il~~r~~~~~~~~ylVkW~g~~~~~~tW~~~~~l~~~~~~v~~~~~ 52 (55)
T smart00298 4 VEKILDHRWKKKGELEYLVKWKGYSYSEDTWEPEENLLNCSKKLDNYKK 52 (55)
T ss_pred hheeeeeeecCCCcEEEEEEECCCCCccCceeeHHHHHHHHHHHHHHHH
Confidence 89999999 7778889999999999999999998876556777888875
No 174
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.92 E-value=2.9e-06 Score=72.75 Aligned_cols=44 Identities=43% Similarity=1.192 Sum_probs=37.4
Q ss_pred cccccCC---CCCeeecCCCCCccccccCCCCCC--CCCCCCCCCCccC
Q 000496 53 SCQACGE---SENLMSCDTCTYAYHAKCLVPPLK--APPSGSWRCPECV 96 (1462)
Q Consensus 53 ~C~~C~~---~g~ll~Cd~C~~~~H~~Cl~Ppl~--~~p~~~W~C~~C~ 96 (1462)
+|.+|+. .+.+|.|+.|.+.||+.|+.|+.. ..+.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 5888887 456999999999999999999987 4445699999996
No 175
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.92 E-value=0.00036 Score=85.66 Aligned_cols=94 Identities=18% Similarity=0.195 Sum_probs=64.5
Q ss_pred CCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEec----CCCCh-----------hhHH
Q 000496 648 KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYD----SDWNP-----------HADL 712 (1462)
Q Consensus 648 gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D----~dWNP-----------~~d~ 712 (1462)
++.+.-|....+.....+ -|+....+...++++|..+...|.++..-.||=.. .-+|| ..-.
T Consensus 597 ~L~vlpiYSQLp~dlQ~k---iFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAK---IFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhh---hcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 455666666666544433 36655666666899999999999999887776321 12333 3334
Q ss_pred HHHhhhhccCCCCcEEEEEEecCCCHHHHHHH
Q 000496 713 QAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 744 (1462)
Q Consensus 713 QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e 744 (1462)
+|-.|++|.|.+.+-..|||+|+.++...|+.
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~ 705 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYTEDAYKNEMLP 705 (1042)
T ss_pred cchhhccccCCCCCcceeeehhhhHHHhhccc
Confidence 55666666667778899999999998887764
No 176
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=97.83 E-value=0.0003 Score=89.94 Aligned_cols=153 Identities=19% Similarity=0.174 Sum_probs=88.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHH-HHHHHHHHCC--CCeE
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN-WEREFATWAP--QMNV 361 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~q-W~~E~~k~~P--~l~v 361 (1462)
.|+++|.+.+.- .....++|.|.+..++-|||+.|=-++....-...+.+|.+.|--.+.+ =..++..+.- +++|
T Consensus 223 ~~fewq~ecls~--~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~v 300 (1008)
T KOG0950|consen 223 KLFEWQAECLSL--PRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPV 300 (1008)
T ss_pred HHHHHHHHHhcc--hhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCcc
Confidence 588889888752 2234889999999999999998643333222222346788888644433 2333333331 3444
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCC----CcceeEecccc
Q 000496 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKP----IKWQCMIVDEG 437 (1462)
Q Consensus 362 vvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~----i~w~~VIVDEA 437 (1462)
-.|.|.- +.. .....-+|.|+|.|........|-. -.-.+|||||-
T Consensus 301 e~y~g~~-------------~p~-----------------~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdEl 350 (1008)
T KOG0950|consen 301 EEYAGRF-------------PPE-----------------KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDEL 350 (1008)
T ss_pred hhhcccC-------------CCC-----------------CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeee
Confidence 4444321 111 1123457899999988776554422 13468999999
Q ss_pred cccCC--cchHHHHHHHhc----ccc--ceEeeccccccC
Q 000496 438 HRLKN--KDSKLFSSLKQY----STR--HRVLLTGTPLQN 469 (1462)
Q Consensus 438 HrlKN--~~Sk~~~~l~~l----~~~--~rLLLTGTPlqN 469 (1462)
|-+.. .+..+-..|..+ ... ..++||||-..|
T Consensus 351 hmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~ 390 (1008)
T KOG0950|consen 351 HMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNN 390 (1008)
T ss_pred eeeeccccchHHHHHHHHHHHhccccceeEeeeecccCCh
Confidence 99843 333333333222 122 258999996333
No 177
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.80 E-value=4.4e-05 Score=87.65 Aligned_cols=90 Identities=19% Similarity=0.232 Sum_probs=70.6
Q ss_pred HHHHHHhccCCCCceEEeeccccccccCcccC--------CEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCC
Q 000496 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATA--------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1462)
Q Consensus 665 ~~Id~Fn~~~s~~fvfLlSTragg~GINL~~A--------d~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1462)
...+.|+++.. . ++|-++||+.||+|++- ..-|+++++|+....+|.+||+||.||.....+..+++.-
T Consensus 52 ~e~~~F~~g~k--~-v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGEK--D-VAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCCc--e-EEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 45678987543 2 45557999999999952 2457899999999999999999999999876655666777
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 000496 737 SIEERMMQMTKKKMVLEHLVV 757 (1462)
Q Consensus 737 TiEE~I~e~~~kK~~L~~~Vi 757 (1462)
..|.+......+|+.--.+..
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt 149 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALT 149 (278)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 789999998888886544443
No 178
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=97.80 E-value=5.3e-05 Score=88.27 Aligned_cols=95 Identities=17% Similarity=0.258 Sum_probs=85.9
Q ss_pred CCeEEEEecchhhHHHHHHHHHhcC---CeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEE
Q 000496 624 GHRVLIYSQFQHMLDLLEDYLTFKK---WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1462)
Q Consensus 624 g~KVLIFSq~~~~ldiLed~L~~~g---i~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VI 700 (1462)
-.|.||||....-.|-|+.++..+| |+.+.++|...+.+|.+-++.|...+ +.|||+|.+++.||+++..-.+|
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~d---vkflictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFD---VKFLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcC---eEEEEEehhhhccccccCCceEE
Confidence 4689999999999999999998764 68889999999999999999997643 45999999999999999999999
Q ss_pred EecCCCChhhHHHHHhhhhcc
Q 000496 701 IYDSDWNPHADLQAMARAHRL 721 (1462)
Q Consensus 701 i~D~dWNP~~d~QAigRahRi 721 (1462)
....+-.-++|..||||++|.
T Consensus 582 nvtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EEecCcccchhhhhhhccchh
Confidence 999999999999999988874
No 179
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.79 E-value=0.00093 Score=87.30 Aligned_cols=113 Identities=18% Similarity=0.270 Sum_probs=79.1
Q ss_pred CCeEEEEecchhhHHHHHHHHHh----cCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEE
Q 000496 624 GHRVLIYSQFQHMLDLLEDYLTF----KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1462)
Q Consensus 624 g~KVLIFSq~~~~ldiLed~L~~----~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~V 699 (1462)
..-+|||-.-....+...+.|.. ....++-+.|..+.++..++ |+....++.-+++||+.+..+|++.....|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 34689998877777777777765 45778899999998887774 655455534489999999999999998887
Q ss_pred EEe----cCCCChhhHH-----------HHHhhhhccCCCCcEEEEEEecCCCHH
Q 000496 700 IIY----DSDWNPHADL-----------QAMARAHRLGQTNKVMIFRLITRGSIE 739 (1462)
Q Consensus 700 Ii~----D~dWNP~~d~-----------QAigRahRiGQ~k~V~VyrLvt~~TiE 739 (1462)
|=- .+-|||..-+ .|.-|++|-|.+.+-..|||++++..+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 621 1123333322 244455555557778899999986554
No 180
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.72 E-value=2.8e-05 Score=80.41 Aligned_cols=28 Identities=46% Similarity=1.066 Sum_probs=26.0
Q ss_pred ccccccCCCCCCCCCCCCCCCCccCCCC
Q 000496 72 AYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1462)
Q Consensus 72 ~~H~~Cl~Ppl~~~p~~~W~C~~C~~~~ 99 (1462)
+||+.||+|||..+|.|+|+||.|....
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~ 28 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEK 28 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCC
Confidence 5999999999999999999999999754
No 181
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.70 E-value=0.017 Score=76.21 Aligned_cols=188 Identities=13% Similarity=0.131 Sum_probs=101.1
Q ss_pred CHHHHHHHHHHHHh----hccCCcEEEEecCCCchHHHHHHHHHHHHhCCCC-cEEEEEcc-hhHHHHHHHHHHHC--CC
Q 000496 287 HPYQLEGLNFLRFS----WSKQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STLRNWEREFATWA--PQ 358 (1462)
Q Consensus 287 rpyQlegvnwL~~~----~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~-p~LIVvP~-sll~qW~~E~~k~~--P~ 358 (1462)
+-+|-.+++.+... -..|--||--..||.|||+.=.=+++.|.....+ ++-|..=+ ++.-|=-.++++-. .+
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~~ 489 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLSD 489 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCCc
Confidence 45888888766442 2234446677899999999988888888776666 55544444 44456566665533 34
Q ss_pred CeEEEEEcChhHHHHHHHhhhcC----CCCchh--hhc---------cccCcc--------c--cccccccccccEEEec
Q 000496 359 MNVVMYVGTSQARNIIREYEFYF----PKNPKK--VKK---------KKSGQV--------V--SESKQDRIKFDVLLTS 413 (1462)
Q Consensus 359 l~vvvy~G~~~~R~~i~~~e~~~----~~~~~~--~~k---------~~~~~~--------~--~~~~~~~~kfdVvItS 413 (1462)
-...|..|+...++.....+--. ..++.. ... .-.+.+ . ...........|+|+|
T Consensus 490 ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~T 569 (1110)
T TIGR02562 490 DDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVCT 569 (1110)
T ss_pred cceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEec
Confidence 45667778877776543111100 000000 000 000000 0 0011122345788888
Q ss_pred HHHHHhhhcccC---------CCcceeEecccccccCCcchHHHHHHHh---ccccceEeeccccccCCHHHH
Q 000496 414 YEMINLDSASLK---------PIKWQCMIVDEGHRLKNKDSKLFSSLKQ---YSTRHRVLLTGTPLQNNLDEL 474 (1462)
Q Consensus 414 Ye~l~~d~~~L~---------~i~w~~VIVDEAHrlKN~~Sk~~~~l~~---l~~~~rLLLTGTPlqNnl~EL 474 (1462)
.+.+......+. .+-=..|||||+|-+-.........+.. .-....++||||--..-...|
T Consensus 570 IDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L 642 (1110)
T TIGR02562 570 IDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTL 642 (1110)
T ss_pred HHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHH
Confidence 888765543222 2223579999999764433322222222 235678999999644433333
No 183
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.68 E-value=1.6e-05 Score=87.71 Aligned_cols=57 Identities=25% Similarity=0.623 Sum_probs=49.2
Q ss_pred hhhhhhhhccccccccccccCCCC---CeeecCCCCCccccccCCCCCCCCCCCCCCCC-ccC
Q 000496 38 VEKFERIVRIDAKDDSCQACGESE---NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCP-ECV 96 (1462)
Q Consensus 38 ~~~~~~~~~~~~~~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~-~C~ 96 (1462)
++-.+-..|.+..+..|.+|+++. ++++||.|+|+||.+|+ .|..+|.|.|.|. .|.
T Consensus 301 v~~~KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CV--GL~~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 301 VGQYKTYFWKCSSCELCRICLGPVIESEHLFCDVCDRGPHTLCV--GLQDLPRGEWICDMRCR 361 (381)
T ss_pred HhHHhhcchhhcccHhhhccCCcccchheeccccccCCCCcccc--ccccccCccchhhhHHH
Confidence 344567788889999999999864 59999999999999999 8999999999997 454
No 184
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=97.54 E-value=1e-05 Score=70.51 Aligned_cols=54 Identities=33% Similarity=0.706 Sum_probs=38.1
Q ss_pred cccccccccccCCccCCCCcccccchhhhHHHhhhhccCCccccccccChhhHHHhhhcChhHHHHHHhhhhh
Q 000496 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (1462)
Q Consensus 101 didkIL~wR~rP~~~~~~~~~~~g~~~~~~~eYlVKWkg~Sy~H~tWvpe~~L~~~~~~~~~~k~kl~~f~kk 173 (1462)
.|++|+++|....... ..+|||||+|.+|.||||+|++.|... +| ..+..|.++
T Consensus 2 ~Ve~Il~~r~~~~~~~-------------~~~ylVkW~g~~~~~~tWe~~~~l~~~---~~---~li~~f~~r 55 (55)
T PF00385_consen 2 EVERILDHRVVKGGNK-------------VYEYLVKWKGYPYSENTWEPEENLKNC---FP---ELIEEFEKR 55 (55)
T ss_dssp EEEEEEEEEEETTEES-------------EEEEEEEETTSSGGGEEEEEGGGCSSH---CH---HHHHHHHHH
T ss_pred EEEEEEEEEEeCCCcc-------------cEEEEEEECCCCCCCCeEeeHHHHhHh---hH---HHHHHHhCC
Confidence 3678888764332110 359999999999999999999987643 23 357777653
No 185
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.53 E-value=2.8e-05 Score=91.44 Aligned_cols=49 Identities=45% Similarity=1.027 Sum_probs=42.7
Q ss_pred ccccccccccCCCCC---eeecCCCCCccccccCCCCCCCCCCCC----CCCCccC
Q 000496 48 DAKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGS----WRCPECV 96 (1462)
Q Consensus 48 ~~~~~~C~~C~~~g~---ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~----W~C~~C~ 96 (1462)
......|.+|....+ ++.||+|...||+.||.|||..+|..+ |.|.+|.
T Consensus 541 ~a~~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 541 KAMNYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred cccceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence 345667999998766 889999999999999999999999755 9999993
No 186
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.52 E-value=0.00065 Score=75.81 Aligned_cols=66 Identities=23% Similarity=0.292 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCc-EEEEecCCCchHHHHHHHHHHHH-------hCCCCcEEEEEcc-hhHHHHHHHHHH
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTH-VILADEMGLGKTIQSIAFLASLF-------GERISPHLVVAPL-STLRNWEREFAT 354 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~-~ILADemGLGKTiqaIa~l~~L~-------~~~~~p~LIVvP~-sll~qW~~E~~k 354 (1462)
+|.+.|..++..+ ..... .++.-..|+|||.+..+++..+. ....+++||++|. ..+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~----~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSA----LSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHH----CTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHH----HcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 3778999998755 45555 88899999999988888887773 2344599999996 667777777666
No 187
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.35 E-value=0.00058 Score=82.69 Aligned_cols=100 Identities=21% Similarity=0.235 Sum_probs=79.5
Q ss_pred HcCCeEEEEecchhhHHHHHHHHHhcCCe-EEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEE
Q 000496 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQ-YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1462)
Q Consensus 622 ~~g~KVLIFSq~~~~ldiLed~L~~~gi~-~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VI 700 (1462)
..|.-|+-||.. -+--+...++.+|.. .+.|.|+.+++.|.+.-..||++.+.. -+|++|.|.|.|+|| ..++||
T Consensus 356 k~GDCvV~FSkk--~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~-dvlVAsDAIGMGLNL-~IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSKK--DIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNEC-DVLVASDAIGMGLNL-NIRRII 431 (700)
T ss_pred CCCCeEEEeehh--hHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCcc-ceEEeeccccccccc-ceeEEE
Confidence 358889989864 233345556666665 999999999999999999999876654 489999999999998 478899
Q ss_pred EecCC---------CChhhHHHHHhhhhccCCCC
Q 000496 701 IYDSD---------WNPHADLQAMARAHRLGQTN 725 (1462)
Q Consensus 701 i~D~d---------WNP~~d~QAigRahRiGQ~k 725 (1462)
|++.- -.-.+..|.-|||+|.|.+-
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~ 465 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKY 465 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccCC
Confidence 98764 34567789999999998763
No 188
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=97.34 E-value=6.9e-05 Score=65.02 Aligned_cols=51 Identities=35% Similarity=0.686 Sum_probs=37.6
Q ss_pred cccccccccccCCccCCCCcccccchhhhHHHhhhhccCCccccccccChhhHHHhhhcChhHHHHHHhhhh
Q 000496 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHR 172 (1462)
Q Consensus 101 didkIL~wR~rP~~~~~~~~~~~g~~~~~~~eYlVKWkg~Sy~H~tWvpe~~L~~~~~~~~~~k~kl~~f~k 172 (1462)
.+++|++.|.... ....+|||||+|++|.||||+|+..|... ..++..|++
T Consensus 4 ~ve~Il~~r~~~~--------------~~~~~y~VkW~g~~~~~~tWe~~~~l~~~-------~~~i~~~~~ 54 (55)
T cd00024 4 EVEKILDHRKKKD--------------GGEYEYLVKWKGYSYSEDTWEPEENLEDC-------KELIDEFKK 54 (55)
T ss_pred eEeeeeeeeecCC--------------CCcEEEEEEECCCCCccCccccHHHhCch-------HHHHHHHHh
Confidence 4678888765432 01258999999999999999999988642 246777764
No 189
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.33 E-value=0.0001 Score=81.32 Aligned_cols=47 Identities=36% Similarity=1.066 Sum_probs=39.2
Q ss_pred ccccccccccCCC--CCeeecCC--CCCc-cccccCCCCCCCCCCCCCCCCccCC
Q 000496 48 DAKDDSCQACGES--ENLMSCDT--CTYA-YHAKCLVPPLKAPPSGSWRCPECVS 97 (1462)
Q Consensus 48 ~~~~~~C~~C~~~--g~ll~Cd~--C~~~-~H~~Cl~Ppl~~~p~~~W~C~~C~~ 97 (1462)
.....+| -|++. |.|+-||. |.+- ||+.|+ .|..+|.|.|+|++|..
T Consensus 218 e~e~lYC-fCqqvSyGqMVaCDn~nCkrEWFH~~CV--GLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 218 EGEELYC-FCQQVSYGQMVACDNANCKREWFHLECV--GLKEPPKGKWYCPECKK 269 (271)
T ss_pred cCceeEE-EecccccccceecCCCCCchhheecccc--ccCCCCCCcEeCHHhHh
Confidence 3456778 46765 78999995 9965 999999 89999999999999974
No 190
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.33 E-value=0.0076 Score=74.57 Aligned_cols=84 Identities=23% Similarity=0.226 Sum_probs=56.5
Q ss_pred CeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeeccccccccCcccCCEEEEecCC------CChh-------------
Q 000496 649 WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD------WNPH------------- 709 (1462)
Q Consensus 649 i~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VIi~D~d------WNP~------------- 709 (1462)
+-++-|..+.+.+....+ |...+.+..-++|+|..+...|.+.....|| ||. +||.
T Consensus 507 liv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~piSK 581 (902)
T KOG0923|consen 507 LIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPISK 581 (902)
T ss_pred EEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCeEEEe--cCccccccCcCCCcCceeEEEeeech
Confidence 346667888887766555 5544454455789999999998888776665 554 3432
Q ss_pred -hHHHHHhhhhccCCCCcEEEEEEecCCCHHH
Q 000496 710 -ADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1462)
Q Consensus 710 -~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE 740 (1462)
.-.||-|||+|.| +-..|||+|.-+++.
T Consensus 582 AsA~QRaGRAGRtg---PGKCfRLYt~~aY~~ 610 (902)
T KOG0923|consen 582 ASANQRAGRAGRTG---PGKCFRLYTAWAYEH 610 (902)
T ss_pred hhhhhhccccCCCC---CCceEEeechhhhhh
Confidence 3457777777766 456788988766543
No 191
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.27 E-value=0.0001 Score=85.33 Aligned_cols=45 Identities=31% Similarity=0.835 Sum_probs=37.9
Q ss_pred cccccc-cCCCCCeeecCC--CC-CccccccCCCCCCCCCCCCCCCCccCC
Q 000496 51 DDSCQA-CGESENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1462)
Q Consensus 51 ~~~C~~-C~~~g~ll~Cd~--C~-~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 97 (1462)
..+|.. |...|+|+-||. |+ ..||+.|+ .|...|.|.|+|+.|..
T Consensus 219 ~~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CV--GL~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 219 PTYCICNQVSYGKMIGCDNPGCPIEWFHFTCV--GLKTKPKGKWYCPRCKA 267 (274)
T ss_pred CEEEEecccccccccccCCCCCCcceEEEecc--ccccCCCCcccchhhhh
Confidence 345543 445789999997 99 88999999 89999999999999985
No 192
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.18 E-value=0.0043 Score=71.59 Aligned_cols=122 Identities=19% Similarity=0.140 Sum_probs=74.3
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhH----HHHHHHHHHHCCC
Q 000496 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL----RNWEREFATWAPQ 358 (1462)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll----~qW~~E~~k~~P~ 358 (1462)
|..+++-|+-|+--| ..|-|.-..||=|||+++. +++++..-...++=||+.+..| .+|.+.|-.++ +
T Consensus 75 g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~-l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~L-G 146 (266)
T PF07517_consen 75 GLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAA-LPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFL-G 146 (266)
T ss_dssp S----HHHHHHHHHH------HTTSEEEESTTSHHHHHHH-HHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHT-T
T ss_pred CCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHH-HHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHh-h
Confidence 456778888886444 3455999999999999875 3344444333478888888777 45888888888 7
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh---------hcccCCCcc
Q 000496 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---------SASLKPIKW 429 (1462)
Q Consensus 359 l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d---------~~~L~~i~w 429 (1462)
+.+-...+........ .....+|+-+|-..+..| ......-.+
T Consensus 147 lsv~~~~~~~~~~~r~----------------------------~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~ 198 (266)
T PF07517_consen 147 LSVGIITSDMSSEERR----------------------------EAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGF 198 (266)
T ss_dssp --EEEEETTTEHHHHH----------------------------HHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSS
T ss_pred hccccCccccCHHHHH----------------------------HHHhCcccccccchhhHHHHHHHHhhccchhccCCC
Confidence 7777766654321110 123567887777766543 111123467
Q ss_pred eeEeccccccc
Q 000496 430 QCMIVDEGHRL 440 (1462)
Q Consensus 430 ~~VIVDEAHrl 440 (1462)
+++||||+..+
T Consensus 199 ~~~ivDEvDs~ 209 (266)
T PF07517_consen 199 DFAIVDEVDSI 209 (266)
T ss_dssp SEEEECTHHHH
T ss_pred CEEEEeccceE
Confidence 89999998876
No 193
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.17 E-value=0.00018 Score=88.32 Aligned_cols=52 Identities=33% Similarity=0.841 Sum_probs=47.8
Q ss_pred hccccccccccccCCCCC---eeecCCCCCccccccCCCCCCCCCCCCCCCCccC
Q 000496 45 VRIDAKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECV 96 (1462)
Q Consensus 45 ~~~~~~~~~C~~C~~~g~---ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~ 96 (1462)
.|.+..+.+|..|+.+|+ ++.|+.|+-+||.+|..|+...++.|.|+|+.|.
T Consensus 62 gWrC~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~ 116 (694)
T KOG4443|consen 62 GWRCPSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCT 116 (694)
T ss_pred CcccCCceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHH
Confidence 477888999999998776 8999999999999999999999999999999886
No 194
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.02 E-value=0.00042 Score=91.19 Aligned_cols=64 Identities=28% Similarity=0.724 Sum_probs=51.3
Q ss_pred cccccccccCCCC-----CeeecCCCCCccccccCCCCCCCCCCCCCCCCccCCCCCcccccccccccCCccCC
Q 000496 49 AKDDSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGD 117 (1462)
Q Consensus 49 ~~~~~C~~C~~~g-----~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~~~~didkIL~wR~rP~~~~~ 117 (1462)
..+.+|.+|.++. .+|.||.|..++|+.|.. ...+|+|.|.|..|.-.+... +.|-++|...+.
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~~~---v~c~~cp~~~gA 285 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQRP---VRCLLCPSKGGA 285 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcCcc---cceEeccCCCCc
Confidence 4577899998763 389999999999999995 567899999999999766544 556667776654
No 195
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.99 E-value=0.018 Score=69.26 Aligned_cols=62 Identities=29% Similarity=0.367 Sum_probs=47.3
Q ss_pred eEEeeccccccccCcccCCEEEEecCC------CCh-----------hhHHHHHhhhhccCCCCcEEEEEEecCCCHHHH
Q 000496 679 CFLLSTRAGGLGINLATADTVIIYDSD------WNP-----------HADLQAMARAHRLGQTNKVMIFRLITRGSIEER 741 (1462)
Q Consensus 679 vfLlSTragg~GINL~~Ad~VIi~D~d------WNP-----------~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~ 741 (1462)
.+++||..+...+.+...-.| .||. +|| ..-.||..|++|.|.+++-..|+|+|+..++..
T Consensus 315 kvVvstniaetsltidgiv~V--IDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~e 392 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTIDGIVFV--IDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKE 392 (699)
T ss_pred eEEEEecchheeeeeccEEEE--ecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhc
Confidence 478999999888877665444 4554 444 445799999999999999999999998766544
Q ss_pred H
Q 000496 742 M 742 (1462)
Q Consensus 742 I 742 (1462)
|
T Consensus 393 m 393 (699)
T KOG0925|consen 393 M 393 (699)
T ss_pred C
Confidence 3
No 196
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=96.89 E-value=0.00044 Score=88.66 Aligned_cols=47 Identities=36% Similarity=0.880 Sum_probs=44.9
Q ss_pred cccccccCCCCCeeecCCCCCccccccCCCCCCCCCCCCCCCCccCC
Q 000496 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1462)
Q Consensus 51 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 97 (1462)
++.|.+|++.|+++||.+|++.||+.|..||+.+.|+..|.|-.|..
T Consensus 344 ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~ 390 (1414)
T KOG1473|consen 344 DDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNI 390 (1414)
T ss_pred cccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhh
Confidence 67899999999999999999999999999999999999999999973
No 197
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=96.80 E-value=0.00056 Score=84.58 Aligned_cols=87 Identities=26% Similarity=0.698 Sum_probs=58.5
Q ss_pred ccccccccCCC-----CCeeecCCCCCccccccCCCCCCCCCCCCCCCCccCCCCCcccccccccccCCccCCCCccccc
Q 000496 50 KDDSCQACGES-----ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLG 124 (1462)
Q Consensus 50 ~~~~C~~C~~~-----g~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~~~~didkIL~wR~rP~~~~~~~~~~~g 124 (1462)
++.+|-+|..+ .+|++||.|....|..|. .+..+|+|.|.|..|.-... - . |=++|..-+.-.....|
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCy--GIle~p~gpWlCr~Calg~~-p-p---CvLCPkkGGamK~~~sg 342 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACY--GILEVPEGPWLCRTCALGIE-P-P---CVLCPKKGGAMKPTKSG 342 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhh--ceeecCCCCeeehhccccCC-C-C---eeeccccCCcccccCCC
Confidence 56778888875 349999999999999999 88999999999999984311 0 1 11234333221111111
Q ss_pred chhhhHHHhhhhccCCccccc-cccChhhHHHh
Q 000496 125 SKQIFVKQYLVKWKGLSYLHC-TWVPEKEFLKA 156 (1462)
Q Consensus 125 ~~~~~~~eYlVKWkg~Sy~H~-tWvpe~~L~~~ 156 (1462)
. + |.|.-| -||||..+.+.
T Consensus 343 T----------~---wAHvsCALwIPEVsie~~ 362 (893)
T KOG0954|consen 343 T----------K---WAHVSCALWIPEVSIECP 362 (893)
T ss_pred C----------e---eeEeeeeeccceeeccCH
Confidence 1 3 456666 89999887654
No 198
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=96.76 E-value=0.00032 Score=95.85 Aligned_cols=52 Identities=33% Similarity=0.903 Sum_probs=45.8
Q ss_pred ccccccccccCCCCC---eeecCCCCCccccccCCCCCCCCCCCCCCCCccCCCC
Q 000496 48 DAKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1462)
Q Consensus 48 ~~~~~~C~~C~~~g~---ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~~~ 99 (1462)
......|.+|...+. ++.|+.|..+||+.|+.|.+...|.|+|+||.|....
T Consensus 1105 s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred ccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 346778999987553 9999999999999999999999999999999998644
No 199
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=96.75 E-value=0.00066 Score=80.25 Aligned_cols=72 Identities=31% Similarity=0.688 Sum_probs=56.0
Q ss_pred hhhhhccccccccccccCCCCC-----eeecCCCCCccccccCCCCCCCCCCCCCCCCccCCCCCcccccccccccCCcc
Q 000496 41 FERIVRIDAKDDSCQACGESEN-----LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVA 115 (1462)
Q Consensus 41 ~~~~~~~~~~~~~C~~C~~~g~-----ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~~~~didkIL~wR~rP~~~ 115 (1462)
.+.+..+|.-++.|.+|..... ++.||+|.-+.|..|. .+..+|+|.|+|..|.-... .+..|-++|...
T Consensus 183 vepi~~~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CY--GI~f~peG~WlCrkCi~~~~---~i~~C~fCps~d 257 (669)
T COG5141 183 VEPIEPSDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCY--GIQFLPEGFWLCRKCIYGEY---QIRCCSFCPSSD 257 (669)
T ss_pred ccccCCchhhhhhhHhccccccCCcceEEEecCcchhhhhhcc--cceecCcchhhhhhhccccc---ceeEEEeccCCC
Confidence 3344445566788999987543 9999999999999999 77889999999999986543 445677888877
Q ss_pred CC
Q 000496 116 GD 117 (1462)
Q Consensus 116 ~~ 117 (1462)
+.
T Consensus 258 Ga 259 (669)
T COG5141 258 GA 259 (669)
T ss_pred Cc
Confidence 64
No 200
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.0042 Score=77.97 Aligned_cols=65 Identities=23% Similarity=0.383 Sum_probs=48.1
Q ss_pred HHHhccCCCCceEEeeccccccccCcccCCEEE--------EecC---------CC-ChhhHHHHHhhhhccCCCCcEEE
Q 000496 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVI--------IYDS---------DW-NPHADLQAMARAHRLGQTNKVMI 729 (1462)
Q Consensus 668 d~Fn~~~s~~fvfLlSTragg~GINL~~Ad~VI--------i~D~---------dW-NP~~d~QAigRahRiGQ~k~V~V 729 (1462)
.-|.....+...++++|.++...|.++...+|| +||+ +| +-+.-.||-|||+|+|- -+.
T Consensus 621 RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgp---GHc 697 (1172)
T KOG0926|consen 621 RVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGP---GHC 697 (1172)
T ss_pred hhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCC---Cce
Confidence 346666666667899999999999999998886 3444 34 34445689999998875 467
Q ss_pred EEEecC
Q 000496 730 FRLITR 735 (1462)
Q Consensus 730 yrLvt~ 735 (1462)
|||++.
T Consensus 698 YRLYSS 703 (1172)
T KOG0926|consen 698 YRLYSS 703 (1172)
T ss_pred eehhhh
Confidence 888754
No 201
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.61 E-value=0.0077 Score=76.68 Aligned_cols=45 Identities=24% Similarity=0.215 Sum_probs=41.9
Q ss_pred ceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccC
Q 000496 678 FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG 722 (1462)
Q Consensus 678 fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiG 722 (1462)
..||.|--|+-+|-+-+.+=+++=+-+.-|-..-.|-+||..|+-
T Consensus 484 lRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLa 528 (985)
T COG3587 484 LRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLA 528 (985)
T ss_pred ceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeee
Confidence 348999999999999999999999999999999999999999975
No 202
>PRK10536 hypothetical protein; Provisional
Probab=96.55 E-value=0.016 Score=66.19 Aligned_cols=150 Identities=15% Similarity=0.161 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHH-hCCCCcEEEEEcchhHHHHHHHHHHHCCCCeEEEE
Q 000496 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GERISPHLVVAPLSTLRNWEREFATWAPQMNVVMY 364 (1462)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~-~~~~~p~LIVvP~sll~qW~~E~~k~~P~l~vvvy 364 (1462)
+...|...+.+| ..+..+++.-+.|+|||+.++++..... ......++|+=|.-.. .|.-.|.|
T Consensus 60 ~n~~Q~~~l~al----~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~----ge~LGfLP------- 124 (262)
T PRK10536 60 RNEAQAHYLKAI----ESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA----DEDLGFLP------- 124 (262)
T ss_pred CCHHHHHHHHHH----hcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc----hhhhCcCC-------
Confidence 556888888877 4456888999999999999999988654 4333345554443222 33334444
Q ss_pred EcChhHHH------HHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEeccccc
Q 000496 365 VGTSQARN------IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1462)
Q Consensus 365 ~G~~~~R~------~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEAH 438 (1462)
|+..+.- .....+..+.... ... .. ....-.|-|.+...++. ..+.-++||||||+
T Consensus 125 -G~~~eK~~p~~~pi~D~L~~~~~~~~--~~~-----~~-----~~~~~~Iei~~l~ymRG-----rtl~~~~vIvDEaq 186 (262)
T PRK10536 125 -GDIAEKFAPYFRPVYDVLVRRLGASF--MQY-----CL-----RPEIGKVEIAPFAYMRG-----RTFENAVVILDEAQ 186 (262)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHhChHH--HHH-----HH-----HhccCcEEEecHHHhcC-----CcccCCEEEEechh
Confidence 2221110 0111111100000 000 00 00012355555555532 12344789999999
Q ss_pred ccCCcchHHHHHHHhccccceEeeccccccCC
Q 000496 439 RLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNN 470 (1462)
Q Consensus 439 rlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNn 470 (1462)
++.- ......+..+....+++++|-|-|.+
T Consensus 187 n~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 187 NVTA--AQMKMFLTRLGENVTVIVNGDITQCD 216 (262)
T ss_pred cCCH--HHHHHHHhhcCCCCEEEEeCChhhcc
Confidence 8754 45556667788889999999997766
No 203
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.54 E-value=0.01 Score=71.93 Aligned_cols=133 Identities=16% Similarity=0.229 Sum_probs=99.3
Q ss_pred hchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHh----cCC----eEEEEecCCCHHHHHHHHHHHhccCCCC
Q 000496 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----KKW----QYERIDGKVGGAERQIRIDRFNAKNSSR 677 (1462)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~----~gi----~~~rIdGst~~~eRq~~Id~Fn~~~s~~ 677 (1462)
.+.|+....+++..+...|-|+|-||...+..+++-...+. -|- .+..+.|+-..++|.++-...- .+.
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F---~G~ 583 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLF---GGK 583 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhh---CCe
Confidence 56788888999999999999999999998876654332221 111 2334667888888887765542 355
Q ss_pred ceEEeeccccccccCcccCCEEEEecCCCChhhHHHHHhhhhccCCCCcEEEEEEecCCCHHHHHH
Q 000496 678 FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMM 743 (1462)
Q Consensus 678 fvfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~ 743 (1462)
.+-+++|.|+.+||++-..|.|+....+.+-.++.|..|||+|-... ...|| ++..+.||...+
T Consensus 584 L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~-SLavy-va~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 584 LCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP-SLAVY-VAFLGPVDQYYM 647 (1034)
T ss_pred eeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC-ceEEE-EEeccchhhHhh
Confidence 66899999999999999999999999999999999999999996433 23332 344556776554
No 204
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.51 E-value=0.019 Score=63.85 Aligned_cols=149 Identities=22% Similarity=0.262 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCC-CcEEEEEcchhHHHHHHHHHHHCCCCeEEEE
Q 000496 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI-SPHLVVAPLSTLRNWEREFATWAPQMNVVMY 364 (1462)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~-~p~LIVvP~sll~qW~~E~~k~~P~l~vvvy 364 (1462)
+-..|...++-|. +..-+++.-..|+|||+.|++....+...+. .+++|+-|..-.. +++ -|.|
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~---~~l-Gflp------- 69 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAG---EDL-GFLP------- 69 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT--------SS--------
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCc---ccc-ccCC-------
Confidence 4568999988773 6678899999999999999999887776643 4777777754332 222 1111
Q ss_pred EcChhH------HHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEeccccc
Q 000496 365 VGTSQA------RNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1462)
Q Consensus 365 ~G~~~~------R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEAH 438 (1462)
|+..+ +......+..+....-.. -...-.|-+.+...++. ..++..+||||||+
T Consensus 70 -G~~~eK~~p~~~p~~d~l~~~~~~~~~~~--------------~~~~~~Ie~~~~~~iRG-----rt~~~~~iIvDEaQ 129 (205)
T PF02562_consen 70 -GDLEEKMEPYLRPIYDALEELFGKEKLEE--------------LIQNGKIEIEPLAFIRG-----RTFDNAFIIVDEAQ 129 (205)
T ss_dssp ---------TTTHHHHHHHTTTS-TTCHHH--------------HHHTTSEEEEEGGGGTT-------B-SEEEEE-SGG
T ss_pred -CCHHHHHHHHHHHHHHHHHHHhChHhHHH--------------HhhcCeEEEEehhhhcC-----ccccceEEEEeccc
Confidence 22111 111112222111110000 00122244444443322 23456899999999
Q ss_pred ccCCcchHHHHHHHhccccceEeeccccccCCH
Q 000496 439 RLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNL 471 (1462)
Q Consensus 439 rlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl 471 (1462)
++.. ..+...+.++....++.++|-|-|.+.
T Consensus 130 N~t~--~~~k~ilTR~g~~skii~~GD~~Q~D~ 160 (205)
T PF02562_consen 130 NLTP--EELKMILTRIGEGSKIIITGDPSQIDL 160 (205)
T ss_dssp G--H--HHHHHHHTTB-TT-EEEEEE-------
T ss_pred CCCH--HHHHHHHcccCCCcEEEEecCceeecC
Confidence 8643 344555667778899999999977664
No 205
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=96.44 E-value=0.0011 Score=81.38 Aligned_cols=84 Identities=30% Similarity=0.700 Sum_probs=60.1
Q ss_pred cccccCCC----C-CeeecCC--CCCccccccCCCCCCCCCCCCCCCCccCCCCCcccccccccccCCccCCCCcccccc
Q 000496 53 SCQACGES----E-NLMSCDT--CTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGS 125 (1462)
Q Consensus 53 ~C~~C~~~----g-~ll~Cd~--C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~~~~didkIL~wR~rP~~~~~~~~~~~g~ 125 (1462)
=|.||.+. + -|+.||+ |.-+.|..|. .+..+|.|.|||..|..-..- .-+.|+++|..++.-+....
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCY--GIvqVPtGpWfCrKCesqera--arvrCeLCP~kdGALKkTDn-- 80 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACY--GIVQVPTGPWFCRKCESQERA--ARVRCELCPHKDGALKKTDN-- 80 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcc--eeEecCCCchhhhhhhhhhhh--ccceeecccCcccceecccC--
Confidence 37788763 2 2999995 9999999999 889999999999999863321 22678889887764332222
Q ss_pred hhhhHHHhhhhccCCccccc-cccChhhHH
Q 000496 126 KQIFVKQYLVKWKGLSYLHC-TWVPEKEFL 154 (1462)
Q Consensus 126 ~~~~~~eYlVKWkg~Sy~H~-tWvpe~~L~ 154 (1462)
-||.|.-| -+|||..+-
T Consensus 81 ------------~GWAHVVCALYIPEVrFg 98 (900)
T KOG0956|consen 81 ------------GGWAHVVCALYIPEVRFG 98 (900)
T ss_pred ------------CCceEEEEEeeccceeec
Confidence 24666666 678876543
No 206
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=96.25 E-value=0.0012 Score=75.87 Aligned_cols=25 Identities=52% Similarity=0.929 Sum_probs=23.2
Q ss_pred HHhhhhccCCccccccccChhhHHH
Q 000496 131 KQYLVKWKGLSYLHCTWVPEKEFLK 155 (1462)
Q Consensus 131 ~eYlVKWkg~Sy~H~tWvpe~~L~~ 155 (1462)
.||||||+|||+.|+||+|++.++.
T Consensus 26 vEYlVKWkGWs~kyNTWEPEENILD 50 (369)
T KOG2748|consen 26 VEYLVKWKGWSQKYNTWEPEENILD 50 (369)
T ss_pred eEEEEEecccccccCccCccccccC
Confidence 4999999999999999999998874
No 207
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=96.15 E-value=0.0049 Score=71.64 Aligned_cols=57 Identities=32% Similarity=0.398 Sum_probs=48.9
Q ss_pred CccchhhhhhhccCCCCceEEEEEecccccccccccccccccchHHHHHHHHhhhcc
Q 000496 190 EWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQSRS 246 (1462)
Q Consensus 190 ~~~~veRII~~r~~~~~~eyLVKWk~L~Y~~~TWE~~~~i~~~~~~i~~f~~~~~~~ 246 (1462)
+...|++|+++|...|..+|||||+|-|=.+.|||.+.+...+.+.|+.|..-....
T Consensus 47 ~~~vvEki~~~r~~~g~~eYlvkW~Gy~~~~ntWEPee~~~~C~~li~~~~~~~~~~ 103 (270)
T KOG1911|consen 47 EEYVVEKILKRRKKNGKIEYLVKWKGYPDPDNTWEPEEHNLDCPELIDEFEKSQKKL 103 (270)
T ss_pred chhhhhhhhhccccCCCceeeeecCCCCCccccCCchhhccccHHHHHHHHHHhccc
Confidence 446899999999888889999999999999999999986667789999999754433
No 208
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.97 E-value=0.0071 Score=61.62 Aligned_cols=35 Identities=26% Similarity=0.528 Sum_probs=27.0
Q ss_pred eeEecccccccCCcchHHHHHHHhc--cccceEeecccc
Q 000496 430 QCMIVDEGHRLKNKDSKLFSSLKQY--STRHRVLLTGTP 466 (1462)
Q Consensus 430 ~~VIVDEAHrlKN~~Sk~~~~l~~l--~~~~rLLLTGTP 466 (1462)
.+|||||+|++. .......++.+ .....++|+|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999984 25556666655 566789999999
No 209
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.92 E-value=0.015 Score=70.24 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=50.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCC-C-cEEEEEcc
Q 000496 277 SPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI-S-PHLVVAPL 342 (1462)
Q Consensus 277 ~P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~-~-p~LIVvP~ 342 (1462)
-|.+++-...+|-|.+-..-+......+++|+|-+..|+|||+.-++++.......+ . .-||-|..
T Consensus 8 l~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSR 75 (755)
T KOG1131|consen 8 LLVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSR 75 (755)
T ss_pred eeEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecC
Confidence 344555567899999888778888899999999999999999998888765543322 2 45666653
No 210
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=95.86 E-value=0.0029 Score=76.68 Aligned_cols=51 Identities=27% Similarity=0.671 Sum_probs=40.9
Q ss_pred ccccccCCCC-----CeeecCCCCCccccccCCCCCCC----CCCCCCCCCccCCCCCcc
Q 000496 52 DSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKA----PPSGSWRCPECVSPLNDI 102 (1462)
Q Consensus 52 ~~C~~C~~~g-----~ll~Cd~C~~~~H~~Cl~Ppl~~----~p~~~W~C~~C~~~~~di 102 (1462)
..|.+|+.++ .||.|+.|...||..|+.|+... -+...|+|..|......+
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~ 228 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKV 228 (464)
T ss_pred ceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhc
Confidence 3488888654 49999999999999999998764 356779999999765444
No 211
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=95.85 E-value=0.015 Score=62.63 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=54.9
Q ss_pred HHcCCeEEEEecchhhHHHHHHHHHhcCC--eEEEEecCCCHHHHHHHHHHHhccCCCCceEEeecc--ccccccCcc--
Q 000496 621 KEQGHRVLIYSQFQHMLDLLEDYLTFKKW--QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR--AGGLGINLA-- 694 (1462)
Q Consensus 621 ~~~g~KVLIFSq~~~~ldiLed~L~~~gi--~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTr--agg~GINL~-- 694 (1462)
...+.++|||...-..++.+.+.+...+. .+..+.- +...+..+++.|..... .+|+++. ...+|||++
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~---~il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEG---AILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSS---EEEEEETTSCCGSSS--ECE
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccC---eEEEEEecccEEEeecCCCc
Confidence 34568999999999999999999976532 1112221 24578899999987433 3677777 889999998
Q ss_pred cCCEEEEecCCC
Q 000496 695 TADTVIIYDSDW 706 (1462)
Q Consensus 695 ~Ad~VIi~D~dW 706 (1462)
.+..||+.-.|+
T Consensus 81 ~~r~vii~glPf 92 (167)
T PF13307_consen 81 LLRAVIIVGLPF 92 (167)
T ss_dssp SEEEEEEES---
T ss_pred hhheeeecCCCC
Confidence 488999998886
No 212
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=95.85 E-value=0.0039 Score=53.91 Aligned_cols=36 Identities=44% Similarity=0.956 Sum_probs=28.6
Q ss_pred HHhhhhccCCccccccccChhhHHHhhhcChhHHHHHHhhhhh
Q 000496 131 KQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (1462)
Q Consensus 131 ~eYlVKWkg~Sy~H~tWvpe~~L~~~~~~~~~~k~kl~~f~kk 173 (1462)
.+|||||+|+++.||||+|...|... ...+.+|.++
T Consensus 18 ~~ylVkW~g~~~~~~tW~~~~~l~~~-------~~~v~~~~~~ 53 (55)
T smart00298 18 LEYLVKWKGYSYSEDTWEPEENLLNC-------SKKLDNYKKK 53 (55)
T ss_pred EEEEEEECCCCCccCceeeHHHHHHH-------HHHHHHHHHh
Confidence 48999999999999999999988631 2356677654
No 213
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.78 E-value=0.0054 Score=82.51 Aligned_cols=179 Identities=26% Similarity=0.389 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCc--hHHHHHHHHHHHHhCC-CCcEEEEEcchhHHHHHHHHHHHCCCCeE
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLG--KTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNV 361 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLG--KTiqaIa~l~~L~~~~-~~p~LIVvP~sll~qW~~E~~k~~P~l~v 361 (1462)
.+.++|.....-... .......++++.|+| ||+.+..+........ ....++++|..+..+|..+...++. ...
T Consensus 84 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~ 160 (866)
T COG0553 84 ILIPHQLDIALEVLN--ELALRVLIADEVGLGDLKTIEAGAILKELLLRGEIKRVLILVPKTLRAQWVVELLEKFN-IRL 160 (866)
T ss_pred ccCcchhhhhhhhhh--hhhhchhhcccccccccccccccccchHhhhhhhhccceeccchHHHHHHHHHhhhhcc-ccc
Confidence 455666655432211 222238889999999 8998877766655443 3489999999999999999876531 111
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----hcccCCCcc---eeEec
Q 000496 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKW---QCMIV 434 (1462)
Q Consensus 362 vvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d----~~~L~~i~w---~~VIV 434 (1462)
.+..-.. .+.....+..+. .......++.+.+..... ...+....| +++++
T Consensus 161 ~~~~~~~-~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (866)
T COG0553 161 AVLDKEG-LRYLLKQYDAYN---------------------PFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVI 218 (866)
T ss_pred hhhhhhh-hhhhhhhhcccc---------------------cccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhc
Confidence 1111000 000000000000 000001033444444332 223334456 89999
Q ss_pred ccccccCCcc---------hHHHHHHHhccc--------cceEeeccccccCCHHHHHHHHHhhcCCCCCC
Q 000496 435 DEGHRLKNKD---------SKLFSSLKQYST--------RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGS 488 (1462)
Q Consensus 435 DEAHrlKN~~---------Sk~~~~l~~l~~--------~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~ 488 (1462)
||+|.+.+.. ...+..+..... -...++++||......+++....++.+..+.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 219 DEAHNLGSSEGTRKLAPLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred chHhhcccccccccccchhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 9999987742 233333333221 12347899999999888887777777766655
No 214
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.60 E-value=0.11 Score=57.56 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhH
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll 345 (1462)
+|-+-|.+++..+.. ...+-.+|.-..|+|||.....+...+...+ .++++++|.+..
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-~~v~~~apT~~A 58 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEALEAAG-KRVIGLAPTNKA 58 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEEESSHHH
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEECCcHHH
Confidence 477899999987732 2334577889999999987666555555543 689999998554
No 215
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.57 E-value=0.056 Score=70.23 Aligned_cols=125 Identities=11% Similarity=0.041 Sum_probs=84.2
Q ss_pred CCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhcc
Q 000496 313 MGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKK 391 (1462)
Q Consensus 313 mGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~~~~k~ 391 (1462)
.|+|||-..+.++......+ +.+||++|. ++..|+..-|+..++...+.+||+.-...+..+.+.-.
T Consensus 169 ~GSGKTevyl~~i~~~l~~G-k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~----------- 236 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAG-RGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAV----------- 236 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcC-CeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHH-----------
Confidence 39999999999988887765 369999997 88899999999999767888999876665544433110
Q ss_pred ccCccccccccccccccEEEecHHHHHhhhcccCCC-cceeEeccccccc--CCcchHH-----HHHHHh-ccccceEee
Q 000496 392 KSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI-KWQCMIVDEGHRL--KNKDSKL-----FSSLKQ-YSTRHRVLL 462 (1462)
Q Consensus 392 ~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i-~w~~VIVDEAHrl--KN~~Sk~-----~~~l~~-l~~~~rLLL 462 (1462)
......|||-|...+ |-.+ +..+|||||=|.- |...+.. ...++. ...-..++-
T Consensus 237 -----------~~G~~~IViGtRSAv------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLg 299 (665)
T PRK14873 237 -----------LRGQARVVVGTRSAV------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIG 299 (665)
T ss_pred -----------hCCCCcEEEEcceeE------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 124567888887654 2233 4578999998864 3322211 111111 223345777
Q ss_pred cccc
Q 000496 463 TGTP 466 (1462)
Q Consensus 463 TGTP 466 (1462)
|+||
T Consensus 300 SaTP 303 (665)
T PRK14873 300 GHAR 303 (665)
T ss_pred CCCC
Confidence 9999
No 216
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.52 E-value=0.021 Score=70.77 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=62.6
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchh-HHHHHHHHHHHCCCCeEE
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWAPQMNVV 362 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sl-l~qW~~E~~k~~P~l~vv 362 (1462)
.+|---|..||... .++.=.||.-..|+|||+++.+++++|...+.+|+||++|..+ +.|-..-|.+- .++|+
T Consensus 409 pkLN~SQ~~AV~~V----L~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~t--gLKVv 482 (935)
T KOG1802|consen 409 PKLNASQSNAVKHV----LQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKT--GLKVV 482 (935)
T ss_pred hhhchHHHHHHHHH----HcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhc--CceEe
Confidence 46888999999776 4566689999999999999999999999888889999999754 66766667664 47777
Q ss_pred EEEc
Q 000496 363 MYVG 366 (1462)
Q Consensus 363 vy~G 366 (1462)
-+..
T Consensus 483 Rl~a 486 (935)
T KOG1802|consen 483 RLCA 486 (935)
T ss_pred eeeh
Confidence 6654
No 217
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.44 E-value=0.048 Score=65.97 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=32.7
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhC-CCCcEEEEEcchhHHHHHHH
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTLRNWERE 351 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~-~~~p~LIVvP~sll~qW~~E 351 (1462)
.|+--..|+|||+.++.++..+... .....+++|++..+.+..++
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~ 49 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLRE 49 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHH
Confidence 4677789999999999999998222 22367888887666665443
No 218
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=95.27 E-value=0.014 Score=67.36 Aligned_cols=49 Identities=33% Similarity=0.379 Sum_probs=42.1
Q ss_pred chhhhhhhccCCCCceEEEEEecccccccccccccccccchHHHHHHHHh
Q 000496 193 TVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (1462)
Q Consensus 193 ~veRII~~r~~~~~~eyLVKWk~L~Y~~~TWE~~~~i~~~~~~i~~f~~~ 242 (1462)
.+|-||-+|...|..+|||||+|-.--..|||.+..|.+ ..+|..|...
T Consensus 12 AaEsIlkkRirKGrvEYlVKWkGWs~kyNTWEPEENILD-pRLi~AFe~r 60 (369)
T KOG2748|consen 12 AAESILKKRIRKGRVEYLVKWKGWSQKYNTWEPEENILD-PRLIAAFEQR 60 (369)
T ss_pred HHHHHHHHHhhccceEEEEEecccccccCccCccccccC-HHHHHHHHhh
Confidence 578899999888999999999999999999999998864 5677888764
No 219
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.12 E-value=0.084 Score=68.63 Aligned_cols=76 Identities=22% Similarity=0.281 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcch-hHHHHHHHHHHHCCCCeEE
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWAPQMNVV 362 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~s-ll~qW~~E~~k~~P~l~vv 362 (1462)
..|-+.|..+|.... ......++.-..|+|||.+++.++..+...+. ++||++|.+ .+.+....+... +.+++
T Consensus 156 ~~ln~~Q~~Av~~~l---~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~-~VLv~a~sn~Avd~l~e~l~~~--~~~vv 229 (637)
T TIGR00376 156 PNLNESQKEAVSFAL---SSKDLFLIHGPPGTGKTRTLVELIRQLVKRGL-RVLVTAPSNIAVDNLLERLALC--DQKIV 229 (637)
T ss_pred CCCCHHHHHHHHHHh---cCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC-CEEEEcCcHHHHHHHHHHHHhC--CCcEE
Confidence 468899999997652 34467889999999999999999888876543 899999974 456666666543 44554
Q ss_pred EEE
Q 000496 363 MYV 365 (1462)
Q Consensus 363 vy~ 365 (1462)
-+.
T Consensus 230 Rlg 232 (637)
T TIGR00376 230 RLG 232 (637)
T ss_pred EeC
Confidence 443
No 220
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=94.38 E-value=0.068 Score=66.47 Aligned_cols=64 Identities=22% Similarity=0.315 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHH
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWERE 351 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E 351 (1462)
..|-+-|..++.+.. .+..-.++--..|+|||.+.+-++..+...+ ..+||.+|. -.+.|-..-
T Consensus 184 ~~ln~SQk~Av~~~~---~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~-k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAI---NNKDLLIIHGPPGTGKTRTLVEIISQLVKQK-KRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred ccccHHHHHHHHHHh---ccCCceEeeCCCCCCceeeHHHHHHHHHHcC-CeEEEEcCchHHHHHHHHH
Confidence 457789999998773 2335578888999999999988888887665 689999997 456665553
No 221
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.26 E-value=0.3 Score=64.58 Aligned_cols=65 Identities=23% Similarity=0.123 Sum_probs=49.7
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCC-CcEEEEEcchhHHHHHHH
Q 000496 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI-SPHLVVAPLSTLRNWERE 351 (1462)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~-~p~LIVvP~sll~qW~~E 351 (1462)
+..|.+-|.+++..+ ..++-.+|.-..|+|||..+-+++..+...+. .++++++|+........+
T Consensus 321 ~~~l~~~Q~~Ai~~~----~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 321 RKGLSEEQKQALDTA----IQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCCCHHHHHHHHHH----HhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHH
Confidence 457999999999866 35567899999999999988777776655432 478899998766654444
No 222
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.01 E-value=0.39 Score=48.62 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=28.6
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHH
Q 000496 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (1462)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~ 346 (1462)
+...+|.-+.|.|||..+-.++..+... ..+++++.......
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~~~~ 60 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDLLE 60 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhhhhh
Confidence 6678899999999998777777666422 23555555544433
No 223
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=93.96 E-value=0.14 Score=57.82 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=61.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHHHHC
Q 000496 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (1462)
Q Consensus 282 ~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k~~ 356 (1462)
.+..+||-|.+.+..|+.. ..+.|.++..-||-|||-..+-++..+...+..=+-+|||++++.+-.+-+..-+
T Consensus 20 ~~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALLEQMRQMLRSRL 93 (229)
T ss_pred cCceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHHHH
Confidence 3567999999999888654 5678999999999999999998888888887677889999999988777765443
No 224
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.56 E-value=0.5 Score=61.32 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=59.3
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHH----HHHHHHHHhC---------C------------------
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS----IAFLASLFGE---------R------------------ 332 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa----Ia~l~~L~~~---------~------------------ 332 (1462)
.+++|-|+.-+..++.......+|+|-..+|+|||+.- +|+..++... .
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e 99 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEE 99 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhh
Confidence 56799999999999999999999999999999999874 4444444300 0
Q ss_pred ---C------CcEEEEEcc--hhHHHHHHHHHHHCCCCeEEEE
Q 000496 333 ---I------SPHLVVAPL--STLRNWEREFATWAPQMNVVMY 364 (1462)
Q Consensus 333 ---~------~p~LIVvP~--sll~qW~~E~~k~~P~l~vvvy 364 (1462)
. .|.++.+-. +-|.|-.+|+.+..-.++.+++
T Consensus 100 ~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVL 142 (945)
T KOG1132|consen 100 AGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVL 142 (945)
T ss_pred hcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEe
Confidence 1 156777774 4588999999887644555444
No 225
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.29 E-value=0.36 Score=62.19 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCC----CcEEEEEcchhHH
Q 000496 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI----SPHLVVAPLSTLR 346 (1462)
Q Consensus 288 pyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~----~p~LIVvP~sll~ 346 (1462)
+.|..++... ..+.-.+|.-..|+|||.++..++..+..... ..+++++|+.--.
T Consensus 148 ~~Qk~A~~~a----l~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA 206 (586)
T TIGR01447 148 NWQKVAVALA----LKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAA 206 (586)
T ss_pred HHHHHHHHHH----hhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHH
Confidence 7999998655 44678899999999999998888877754321 3689999985443
No 226
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=93.22 E-value=0.088 Score=69.66 Aligned_cols=110 Identities=25% Similarity=0.350 Sum_probs=75.3
Q ss_pred hccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhH-----HHHHHHHHHHCCCCeEEEEEcChhHHHHHH
Q 000496 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-----RNWEREFATWAPQMNVVMYVGTSQARNIIR 375 (1462)
Q Consensus 301 ~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll-----~qW~~E~~k~~P~l~vvvy~G~~~~R~~i~ 375 (1462)
+..+.+++++...|+|||++|--.+ +.....+.+.-++|...+ ..|.+-|... .++.++...|...---.
T Consensus 1156 y~~nd~v~vga~~gsgkt~~ae~a~--l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~lk-- 1230 (1674)
T KOG0951|consen 1156 YNTNDNVLVGAPNGSGKTACAELAL--LRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDLK-- 1230 (1674)
T ss_pred ecccceEEEecCCCCchhHHHHHHh--cCCccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccchH--
Confidence 4567889999999999998764322 334455688999998665 5588888777 36677766665432111
Q ss_pred HhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEecccccccCCcch
Q 000496 376 EYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDS 445 (1462)
Q Consensus 376 ~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEAHrlKN~~S 445 (1462)
-..+-+|+|.|++....-. ... .-++.|+||.|-+.+...
T Consensus 1231 ---------------------------l~~~~~vii~tpe~~d~lq-~iQ--~v~l~i~d~lh~igg~~g 1270 (1674)
T KOG0951|consen 1231 ---------------------------LLQKGQVIISTPEQWDLLQ-SIQ--QVDLFIVDELHLIGGVYG 1270 (1674)
T ss_pred ---------------------------HhhhcceEEechhHHHHHh-hhh--hcceEeeehhhhhcccCC
Confidence 1235679999998875442 222 357899999999976544
No 227
>PLN03025 replication factor C subunit; Provisional
Probab=92.99 E-value=0.82 Score=54.58 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=23.2
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 305 THVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
.+.+|.-+.|+|||..+.+++..+...
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~ 61 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGP 61 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 468999999999999999999887643
No 228
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=92.88 E-value=2.5 Score=55.65 Aligned_cols=162 Identities=15% Similarity=0.169 Sum_probs=88.0
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHHHHHHCCCCeEEE
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVM 363 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~k~~P~l~vvv 363 (1462)
.|-.-|++|+--. .....-.++---.|+|||.+...++..|...+ +.+|+.+=+ +.+.|-.--++.+. +. ++
T Consensus 669 ~LN~dQr~A~~k~---L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~g-kkVLLtsyThsAVDNILiKL~~~~--i~-~l 741 (1100)
T KOG1805|consen 669 RLNNDQRQALLKA---LAAEDYALILGMPGTGKTTTISLLIKILVALG-KKVLLTSYTHSAVDNILIKLKGFG--IY-IL 741 (1100)
T ss_pred hcCHHHHHHHHHH---HhccchheeecCCCCCchhhHHHHHHHHHHcC-CeEEEEehhhHHHHHHHHHHhccC--cc-ee
Confidence 5888999997543 23333344445589999998888888887665 356666654 77888766665543 22 22
Q ss_pred EEcChhH-HHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEecccccccCC
Q 000496 364 YVGTSQA-RNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (1462)
Q Consensus 364 y~G~~~~-R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEAHrlKN 442 (1462)
-.|.... -..++++.. ......+. +..-........||.+|--.+. ...|..-.||++|||||-.+.-
T Consensus 742 RLG~~~kih~~v~e~~~-~~~~s~ks--------~~~l~~~~~~~~IVa~TClgi~--~plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 742 RLGSEEKIHPDVEEFTL-TNETSEKS--------YADLKKFLDQTSIVACTCLGIN--HPLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred ecCCccccchHHHHHhc-ccccchhh--------HHHHHHHhCCCcEEEEEccCCC--chhhhccccCEEEEcccccccc
Confidence 2343322 122333221 00000000 0000001123345555543332 3445566799999999976643
Q ss_pred cchHHHHHHHhccccceEeeccccccC
Q 000496 443 KDSKLFSSLKQYSTRHRVLLTGTPLQN 469 (1462)
Q Consensus 443 ~~Sk~~~~l~~l~~~~rLLLTGTPlqN 469 (1462)
+ -.|..+....+..|-|-+.|-
T Consensus 811 P-----~~LgPL~~s~kFVLVGDh~QL 832 (1100)
T KOG1805|consen 811 P-----LCLGPLSFSNKFVLVGDHYQL 832 (1100)
T ss_pred c-----hhhhhhhhcceEEEecccccC
Confidence 2 234445566778888876543
No 229
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=92.78 E-value=0.024 Score=45.18 Aligned_cols=33 Identities=36% Similarity=0.968 Sum_probs=18.8
Q ss_pred CeeecCCCCCccccccCCCCCCCCCCC-CCCCCccC
Q 000496 62 NLMSCDTCTYAYHAKCLVPPLKAPPSG-SWRCPECV 96 (1462)
Q Consensus 62 ~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~-~W~C~~C~ 96 (1462)
.|+.|+.|.-.+|..|. .+...|.+ .|+|..|.
T Consensus 3 ~ll~C~~C~v~VH~~CY--Gv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCY--GVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp EEEE-SSS--EEEHHHH--T-SS--SS-----HHH-
T ss_pred ceEEeCCCCCcCChhhC--CcccCCCCCcEECCcCC
Confidence 48999999999999999 66666666 79998884
No 230
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=92.46 E-value=1.1 Score=58.38 Aligned_cols=42 Identities=26% Similarity=0.273 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhccCC--c-EEEEecCCCchHHHHHHHHHHHHhC
Q 000496 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 290 QlegvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
|...+..|...+..++ + .||.-.-|+|||..+..|...|...
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 3344444444444432 3 4889999999999999999888643
No 231
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.40 E-value=0.11 Score=64.42 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=31.6
Q ss_pred EecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHH
Q 000496 310 ADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLR 346 (1462)
Q Consensus 310 ADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~ 346 (1462)
-+.+|+|||+++.++|.+++..+.+.+|..|-. +++.
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nile 40 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILE 40 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHH
Confidence 357999999999999999999998899998885 4444
No 232
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=92.34 E-value=0.12 Score=43.88 Aligned_cols=28 Identities=43% Similarity=0.687 Sum_probs=24.0
Q ss_pred CccCHHHHHHHHHHHHhhccchhHHhhh
Q 000496 1082 KFWKEEHDSLLLRAVLKHGYGRWQAIVD 1109 (1462)
Q Consensus 1082 ~~w~~eeDr~LL~~i~k~Gyg~We~Ik~ 1109 (1462)
..||++||..|+.+|.+||-++|..|-.
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~ 29 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAK 29 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 3699999999999999999999987754
No 233
>PRK04296 thymidine kinase; Provisional
Probab=92.14 E-value=0.3 Score=53.85 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=26.1
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEc
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP 341 (1462)
.++.-+||.|||..++.++..+...+ .+++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g-~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERG-MKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcC-CeEEEEec
Confidence 46788999999999999888776543 36777755
No 234
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=91.96 E-value=0.62 Score=60.25 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC---CCcEEEEEcchhHHH
Q 000496 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLRN 347 (1462)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~---~~p~LIVvP~sll~q 347 (1462)
..++|..++... ...+-+||.-..|+|||.++..++..+.... ...+++++|+.--..
T Consensus 153 ~~d~Qk~Av~~a----~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~ 213 (615)
T PRK10875 153 EVDWQKVAAAVA----LTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAA 213 (615)
T ss_pred CCHHHHHHHHHH----hcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHH
Confidence 458999998654 4567789999999999999888888775532 236888899755433
No 235
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.92 E-value=58 Score=43.66 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=24.1
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
...+.||.-+.|.|||..+-++...+...
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~ 230 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEG 230 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 45689999999999999988888877553
No 236
>PRK06526 transposase; Provisional
Probab=91.67 E-value=0.77 Score=53.09 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=37.6
Q ss_pred HHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHH
Q 000496 292 EGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (1462)
Q Consensus 292 egvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~ 353 (1462)
.+..|+ ..+.+.+|.-..|+|||..+.++...+...+. +++++ ....|.+++.
T Consensus 90 ~~~~fi----~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~-~v~f~----t~~~l~~~l~ 142 (254)
T PRK06526 90 GTLDFV----TGKENVVFLGPPGTGKTHLAIGLGIRACQAGH-RVLFA----TAAQWVARLA 142 (254)
T ss_pred hcCchh----hcCceEEEEeCCCCchHHHHHHHHHHHHHCCC-chhhh----hHHHHHHHHH
Confidence 344666 57788999999999999999999888776543 44443 3345656654
No 237
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=91.39 E-value=0.8 Score=54.64 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=29.5
Q ss_pred HHHHHHHhhccCC--cEEEEecCCCchHHHHHHHHHHHHhCC
Q 000496 293 GLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGER 332 (1462)
Q Consensus 293 gvnwL~~~~~~~~--~~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1462)
.+.+|......+. +.+|.-+.|+|||..+.+++..+....
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~ 64 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP 64 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 3444444445555 789999999999999999998886543
No 238
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=91.39 E-value=0.44 Score=55.14 Aligned_cols=28 Identities=21% Similarity=0.161 Sum_probs=22.6
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 304 QTHVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
..+.+|.-+.|+|||..|-++...+...
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~ 69 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEM 69 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3467899999999999998887776543
No 239
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.17 E-value=1.6 Score=53.60 Aligned_cols=55 Identities=11% Similarity=0.185 Sum_probs=35.6
Q ss_pred cceeEecccccccCCcch---HHHHHHHhccc--cceEeeccccccCCHHHHHHHHHhhc
Q 000496 428 KWQCMIVDEGHRLKNKDS---KLFSSLKQYST--RHRVLLTGTPLQNNLDELFMLMHFLD 482 (1462)
Q Consensus 428 ~w~~VIVDEAHrlKN~~S---k~~~~l~~l~~--~~rLLLTGTPlqNnl~EL~sLL~fL~ 482 (1462)
..++||||++.+.....- .+...+..... ...|.|+||-=++.+.+++.-...+.
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~ 313 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFS 313 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCC
Confidence 468999999999864332 23333333322 45688999987777777776555443
No 240
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.02 E-value=11 Score=48.48 Aligned_cols=82 Identities=12% Similarity=0.115 Sum_probs=48.3
Q ss_pred CeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCC-----HHHHHHHHHHHhcc---CCCCceEEeeccccccccCccc-
Q 000496 625 HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVG-----GAERQIRIDRFNAK---NSSRFCFLLSTRAGGLGINLAT- 695 (1462)
Q Consensus 625 ~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~-----~~eRq~~Id~Fn~~---~s~~fvfLlSTragg~GINL~~- 695 (1462)
.-|++|...-..|..+...+...|+- .+|.|.-+ ..--..+++.|... +.+.+.|-+--.-.++|||+.+
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~ 708 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDD 708 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEEEEEeccccccccccccc
Confidence 35888888888888888888765542 12222110 00024566666421 1232323333445689999985
Q ss_pred -CCEEEEecCCCC
Q 000496 696 -ADTVIIYDSDWN 707 (1462)
Q Consensus 696 -Ad~VIi~D~dWN 707 (1462)
+..||+.-.|+-
T Consensus 709 LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 709 LGRAVVVVGLPYP 721 (821)
T ss_pred cccEEEEeecCCC
Confidence 889999888874
No 241
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=90.95 E-value=0.24 Score=41.04 Aligned_cols=29 Identities=38% Similarity=0.714 Sum_probs=26.0
Q ss_pred CccCHHHHHHHHHHHHhhccchhHHhhhC
Q 000496 1082 KFWKEEHDSLLLRAVLKHGYGRWQAIVDD 1110 (1462)
Q Consensus 1082 ~~w~~eeDr~LL~~i~k~Gyg~We~Ik~D 1110 (1462)
..|+.+||..|+.++.+||.++|..|...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~ 30 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKE 30 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 57999999999999999999999887554
No 242
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=90.75 E-value=6.1 Score=53.08 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=21.9
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhC
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
.||.-..|+|||..+..|...|...
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 5789999999999999999888653
No 243
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.68 E-value=0.7 Score=57.72 Aligned_cols=42 Identities=21% Similarity=0.144 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhccCC---cEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 290 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
|-..+..|......++ ..|+.-+.|.|||..|..++..+...
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4444444444444443 25899999999999999999887654
No 244
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.64 E-value=0.89 Score=55.03 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhccCC---cEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 290 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
|.+++..|...+..++ ..++.-+.|+|||..|..++..+...
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 4456677777777766 47889999999999999999988763
No 245
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=90.57 E-value=1.4 Score=46.44 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHhccCCCCceEEeeccccccccCccc--CCEEEEecCCC
Q 000496 659 GGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT--ADTVIIYDSDW 706 (1462)
Q Consensus 659 ~~~eRq~~Id~Fn~~~s~~fvfLlSTragg~GINL~~--Ad~VIi~D~dW 706 (1462)
...+...+++.|...... .+|+++....+|||++. +..||+.-.|+
T Consensus 32 ~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 32 DGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred ChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 344578899999864432 46777777999999984 68899987665
No 246
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=90.55 E-value=0.25 Score=40.19 Aligned_cols=29 Identities=45% Similarity=0.759 Sum_probs=25.9
Q ss_pred ccCHHHHHHHHHHHHhhccchhHHhhhCc
Q 000496 1083 FWKEEHDSLLLRAVLKHGYGRWQAIVDDK 1111 (1462)
Q Consensus 1083 ~w~~eeDr~LL~~i~k~Gyg~We~Ik~D~ 1111 (1462)
.|+.+||..|+.++.+||.++|..|...-
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~ 29 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKEL 29 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHc
Confidence 49999999999999999999998876654
No 247
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=89.92 E-value=0.7 Score=46.19 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=31.6
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHH
Q 000496 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1462)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW 348 (1462)
+...+|.-.+|+|||..+..++..+.... ..++++.+......+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccC
Confidence 45688999999999999888887765543 356666666544433
No 248
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=89.89 E-value=0.12 Score=66.40 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=60.2
Q ss_pred ccccccccCCCCCeeecCCCCCccccccCCCCCCCCCCCCCCCCccCCCCCcccccccccccCCccCCCCcccccchhhh
Q 000496 50 KDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGSKQIF 129 (1462)
Q Consensus 50 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~~~~didkIL~wR~rP~~~~~~~~~~~g~~~~~ 129 (1462)
...-|.+|..++.+.+|+.|++.||.+|+.|+...++..-|.|..|..
T Consensus 176 ~~~~~~~~~~~~k~~~~a~~~~r~~~~~iKpe~~~i~rii~~~~s~~~-------------------------------- 223 (696)
T KOG0383|consen 176 PEAEIGVTRDKGKLVPYADLEERFLLYGIKPEWMPIARIINRRSSQKG-------------------------------- 223 (696)
T ss_pred ccccccccccCccccccccchhhhhheeccccccccchhhhhhccccc--------------------------------
Confidence 345577899999999999999999999999988888888888876653
Q ss_pred HHHhhhhccCCccccccccChhh
Q 000496 130 VKQYLVKWKGLSYLHCTWVPEKE 152 (1462)
Q Consensus 130 ~~eYlVKWkg~Sy~H~tWvpe~~ 152 (1462)
...|+|||+..+|..++|..+..
T Consensus 224 ~~~~~Vk~k~l~~d~~~~e~~~~ 246 (696)
T KOG0383|consen 224 ATDYLVKWKELSYDEQEWEVEDP 246 (696)
T ss_pred ceeeEeeeccCCccccCCCcCCC
Confidence 13799999999999999998774
No 249
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=89.31 E-value=1.5 Score=46.22 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=34.0
Q ss_pred EEEecCCCHHHHHHHHHHHhccCCCCceEEeeccc--cccccCccc--CCEEEEecCCC
Q 000496 652 ERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA--GGLGINLAT--ADTVIIYDSDW 706 (1462)
Q Consensus 652 ~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTra--gg~GINL~~--Ad~VIi~D~dW 706 (1462)
..+.+... .+...+++.|+......-.+|+++.. .++||||+. +..||+.-.|+
T Consensus 23 i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 33444332 34578889998643310124555544 899999984 78899987765
No 250
>PRK08181 transposase; Validated
Probab=89.27 E-value=3.3 Score=48.38 Aligned_cols=53 Identities=17% Similarity=0.065 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEE
Q 000496 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (1462)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIV 339 (1462)
+..-|..++..+......+.+.+|.-..|+|||..+.++...+...+ ..++.+
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g-~~v~f~ 140 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENG-WRVLFT 140 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcC-Cceeee
Confidence 55677777754432236788899999999999999999888876653 244444
No 251
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=88.64 E-value=0.24 Score=61.91 Aligned_cols=47 Identities=32% Similarity=0.809 Sum_probs=39.7
Q ss_pred cccccccCCCCCeeecCCCCCccccccCCCCCCC-CCCCCCCCCccCC
Q 000496 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKA-PPSGSWRCPECVS 97 (1462)
Q Consensus 51 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~-~p~~~W~C~~C~~ 97 (1462)
-..|.+|..+|++++|+.|+.+||..|..+++.. .+.+.|.|..|..
T Consensus 47 ~ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~ 94 (613)
T KOG4299|consen 47 ATSCGICKSGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPK 94 (613)
T ss_pred hhhcchhhhcCCccccccCccccchhccCcccCcccccccccccCCCc
Confidence 5679999999999999999999999999998872 2345688887764
No 252
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=88.48 E-value=2.4 Score=47.56 Aligned_cols=44 Identities=23% Similarity=0.154 Sum_probs=30.1
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHH
Q 000496 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1462)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW 348 (1462)
...+.+|.-+.|+|||..+.++.......+ .+ ++.++.+.+..|
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~-~~-~~~i~~~~~~~~ 80 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERG-KS-AIYLPLAELAQA 80 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcC-Cc-EEEEeHHHHHHh
Confidence 456688999999999999988887766443 23 344555444443
No 253
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.48 E-value=2 Score=55.38 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=21.9
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHh
Q 000496 306 HVILADEMGLGKTIQSIAFLASLFG 330 (1462)
Q Consensus 306 ~~ILADemGLGKTiqaIa~l~~L~~ 330 (1462)
..||.-..|+|||..+..|+..|..
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3588999999999999999998875
No 254
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=88.43 E-value=1.4 Score=52.38 Aligned_cols=69 Identities=20% Similarity=0.168 Sum_probs=40.5
Q ss_pred ccccCCCCCCCCCCCC-HHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHH-HhCC-CCcEEEEEcc
Q 000496 272 QQYEHSPEFLSGGSLH-PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL-FGER-ISPHLVVAPL 342 (1462)
Q Consensus 272 ~~~~~~P~~~~g~~Lr-pyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L-~~~~-~~p~LIVvP~ 342 (1462)
..+...+..+.|...| -+|.-++..|.. ..-.=+.|.-.-|+|||+-|+|...+- ...+ ..+++|.=|.
T Consensus 214 ~~l~~~~~~vwGi~prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~ 285 (436)
T COG1875 214 LLLKHEDQEVWGIRPRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPT 285 (436)
T ss_pred EecccCchhhhccCcccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCC
Confidence 3333455555555444 389889887621 233446788899999999887665433 2222 2345554444
No 255
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=88.42 E-value=0.15 Score=63.69 Aligned_cols=59 Identities=36% Similarity=0.791 Sum_probs=42.3
Q ss_pred ccccccccCCCCC-----eeecCCCCCccccccCCCCCCCC-CCCCCCCCccCC-----CCCcccccccc
Q 000496 50 KDDSCQACGESEN-----LMSCDTCTYAYHAKCLVPPLKAP-PSGSWRCPECVS-----PLNDIDKILDC 108 (1462)
Q Consensus 50 ~~~~C~~C~~~g~-----ll~Cd~C~~~~H~~Cl~Ppl~~~-p~~~W~C~~C~~-----~~~didkIL~w 108 (1462)
.+.+|.+|+..|. |+.|..|...||.+|+.--+... -.+.|.||.|+- ..+|+.+.+.|
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD~~kf~~C 86 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGDPKKFLLC 86 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCCccccccc
Confidence 4667888887553 99999999999999996444332 234599999973 23556666666
No 256
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.24 E-value=3.4 Score=51.39 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=34.3
Q ss_pred cceeEecccccccCCcchH---HHHHHHh--ccccceEeeccccccCCHHHHHHHHHhhcC
Q 000496 428 KWQCMIVDEGHRLKNKDSK---LFSSLKQ--YSTRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1462)
Q Consensus 428 ~w~~VIVDEAHrlKN~~Sk---~~~~l~~--l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p 483 (1462)
.+++||||-+-+....... +...+.. ......|+|++|+-.+.+.+++..+..+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 4689999998765433222 2222221 122457889999877777777776665544
No 257
>PHA02533 17 large terminase protein; Provisional
Probab=88.16 E-value=3 Score=53.31 Aligned_cols=55 Identities=20% Similarity=0.147 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHh-CCCCcEEEEEcc
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ERISPHLVVAPL 342 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~-~~~~p~LIVvP~ 342 (1462)
..|+|+|..-+..| ..++-.++.-.=..|||..+.+++.++.- .....+++++|.
T Consensus 58 f~L~p~Q~~i~~~~----~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~ 113 (534)
T PHA02533 58 VQMRDYQKDMLKIM----HKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHK 113 (534)
T ss_pred cCCcHHHHHHHHHH----hcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 56999999988766 23444577777889999987765544332 333378888884
No 258
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=88.09 E-value=5.3 Score=49.61 Aligned_cols=126 Identities=14% Similarity=0.175 Sum_probs=91.4
Q ss_pred hHHHHHH-HHHHHHH--HcCCeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeec
Q 000496 608 GKLQLLD-KMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1462)
Q Consensus 608 gKl~~L~-klL~~l~--~~g~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlST 684 (1462)
.++.... ++|+.+. ....++|||...---.=.|..+|...++.|+.|+--++..+-..+-..|..+... ++|+|-
T Consensus 281 ~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~--iLL~TE 358 (442)
T PF06862_consen 281 ARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKP--ILLYTE 358 (442)
T ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCce--EEEEEh
Confidence 3444443 4777776 3457899998766556668899999999999999999999999999999875433 456665
Q ss_pred ccc-ccccCcccCCEEEEecCCCChhhHHHHHhhhhccCC----CCcEEEEEEecC
Q 000496 685 RAG-GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ----TNKVMIFRLITR 735 (1462)
Q Consensus 685 rag-g~GINL~~Ad~VIi~D~dWNP~~d~QAigRahRiGQ----~k~V~VyrLvt~ 735 (1462)
|+- =.=..+..+.+||+|.+|-+|+-|...+.-...-.+ ...+.|.-|.++
T Consensus 359 R~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 359 RFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred HHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 552 234556789999999999999999888865554333 234555555554
No 259
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=87.99 E-value=2.5 Score=48.69 Aligned_cols=42 Identities=21% Similarity=0.380 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhccCC-cEEEEecCCCchHHHHHHHHHHHH
Q 000496 288 PYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLF 329 (1462)
Q Consensus 288 pyQlegvnwL~~~~~~~~-~~ILADemGLGKTiqaIa~l~~L~ 329 (1462)
+.+..+++.+......+. .++|.-+.|+|||..+-.++..+.
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 455667777766555544 477899999999988777665543
No 260
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=87.87 E-value=0.72 Score=59.22 Aligned_cols=166 Identities=16% Similarity=0.218 Sum_probs=96.7
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc-hhHHHHHHH-HHHHCCCCeE
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWERE-FATWAPQMNV 361 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E-~~k~~P~l~v 361 (1462)
....|||.+-++-|.. ..-..+.+.-..-+|||...+.++.+.....++|+|+|.|. .....|..+ |.-..
T Consensus 15 ~~~~Py~~eimd~~~~--~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi----- 87 (557)
T PF05876_consen 15 TDRTPYLREIMDALSD--PSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMI----- 87 (557)
T ss_pred CCCChhHHHHHHhcCC--cCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHH-----
Confidence 4688999998886622 12456778888899999999999999888888999999997 556667533 33222
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEecccccccC
Q 000496 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLK 441 (1462)
Q Consensus 362 vvy~G~~~~R~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEAHrlK 441 (1462)
..+..-+..+... . .+..+..+.. +.- ..-.+.++... -...|......+|++||..+.-
T Consensus 88 ---~~sp~l~~~~~~~------~-----~~~~~~t~~~-k~f-~gg~l~~~ga~----S~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 88 ---RASPVLRRKLSPS------K-----SRDSGNTILY-KRF-PGGFLYLVGAN----SPSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred ---HhCHHHHHHhCch------h-----hcccCCchhh-eec-CCCEEEEEeCC----CCcccccCCcCEEEEechhhcc
Confidence 1111111111100 0 0000000000 000 01113333322 2346778888999999999983
Q ss_pred ----CcchHHHH---HHHhccccceEeeccccccCCHHHHHH
Q 000496 442 ----NKDSKLFS---SLKQYSTRHRVLLTGTPLQNNLDELFM 476 (1462)
Q Consensus 442 ----N~~Sk~~~---~l~~l~~~~rLLLTGTPlqNnl~EL~s 476 (1462)
+....... ....+....++++..||......-+..
T Consensus 148 ~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~ 189 (557)
T PF05876_consen 148 DDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIER 189 (557)
T ss_pred ccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHH
Confidence 33333333 344555678899999997665444443
No 261
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=87.57 E-value=2.7 Score=54.67 Aligned_cols=42 Identities=24% Similarity=0.202 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhccCC--c-EEEEecCCCchHHHHHHHHHHHHhC
Q 000496 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 290 QlegvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
|-..+..|...+..++ + .|+.-+.|+|||..|..|+..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 3344445555555543 2 4789999999999999999888654
No 262
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=87.40 E-value=0.41 Score=50.75 Aligned_cols=34 Identities=35% Similarity=0.870 Sum_probs=26.3
Q ss_pred eeecCCCCCccccccCCCCCCCC------------------CCCCCCCCccC
Q 000496 63 LMSCDTCTYAYHAKCLVPPLKAP------------------PSGSWRCPECV 96 (1462)
Q Consensus 63 ll~Cd~C~~~~H~~Cl~Ppl~~~------------------p~~~W~C~~C~ 96 (1462)
|++|..|.|+||+.+|+|+-... .+..|.|.+|.
T Consensus 124 LFRC~~C~RawH~~HLP~~~~~~~~~~~~~~~~~~~~R~~EYs~~W~C~dC~ 175 (175)
T PF15446_consen 124 LFRCTSCHRAWHFEHLPPPSGTTSDDDDDDDTDLRSQRLKEYSIDWQCKDCA 175 (175)
T ss_pred EEecCCccceeehhhCCCCcCCCCCcccccchhHHHHHHHHhCCccccCCCC
Confidence 89999999999999997753211 13469999884
No 263
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=87.08 E-value=0.94 Score=53.27 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=27.6
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhCCC---CcEEEEEc
Q 000496 304 QTHVILADEMGLGKTIQSIAFLASLFGERI---SPHLVVAP 341 (1462)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~~~---~p~LIVvP 341 (1462)
+.+.+|.-+.|+|||..|.++...+...+. ++++.+..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 346788999999999999888887766432 25554443
No 264
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.88 E-value=5.7 Score=51.56 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.5
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHh
Q 000496 306 HVILADEMGLGKTIQSIAFLASLFG 330 (1462)
Q Consensus 306 ~~ILADemGLGKTiqaIa~l~~L~~ 330 (1462)
..|+....|+|||..|..++..+..
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4489999999999999999888754
No 265
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=86.29 E-value=6.2 Score=46.64 Aligned_cols=27 Identities=37% Similarity=0.680 Sum_probs=22.2
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 305 THVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
.+.+|.-+.|+|||..+-+++..+...
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l~~~ 65 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARELYGE 65 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 358999999999999988888877543
No 266
>CHL00181 cbbX CbbX; Provisional
Probab=86.26 E-value=1.2 Score=52.43 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=28.8
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhCCC---CcEEEEEcchhH
Q 000496 304 QTHVILADEMGLGKTIQSIAFLASLFGERI---SPHLVVAPLSTL 345 (1462)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~~~---~p~LIVvP~sll 345 (1462)
+.+.+|.-+.|+|||..|-++...+...+. ++++.|....++
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~ 103 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLV 103 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHH
Confidence 345789999999999999988887765432 354444433333
No 267
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.24 E-value=2.3 Score=56.54 Aligned_cols=40 Identities=28% Similarity=0.330 Sum_probs=27.7
Q ss_pred HHHHHHHHhhccC--CcE-EEEecCCCchHHHHHHHHHHHHhC
Q 000496 292 EGLNFLRFSWSKQ--THV-ILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 292 egvnwL~~~~~~~--~~~-ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
..+..|...+..+ .+. ||.-+.|.|||..|..|+..|...
T Consensus 23 ~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 23 HVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred HHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 3333344444433 344 799999999999999999888653
No 268
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=86.20 E-value=5.9 Score=51.73 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=27.4
Q ss_pred HHHHHHHHhhccCC---cEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 292 EGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 292 egvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
..+..|...+..++ ..||.-..|+|||..|..|+..|...
T Consensus 23 ~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 23 HVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 33334433334433 45889999999999999998887643
No 269
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=86.06 E-value=0.53 Score=56.64 Aligned_cols=32 Identities=34% Similarity=0.702 Sum_probs=28.7
Q ss_pred CCccCHHHHHHHHHHHHhhccchhHHhhhCcc
Q 000496 1081 GKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKD 1112 (1462)
Q Consensus 1081 ~~~w~~eeDr~LL~~i~k~Gyg~We~Ik~D~~ 1112 (1462)
.-.||.+|+..||-++..||||||+.|-.-.-
T Consensus 72 ~~~WtadEEilLLea~~t~G~GNW~dIA~hIG 103 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAAETYGFGNWQDIADHIG 103 (438)
T ss_pred CCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc
Confidence 46899999999999999999999998877653
No 270
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.88 E-value=10 Score=48.41 Aligned_cols=40 Identities=25% Similarity=0.254 Sum_probs=27.5
Q ss_pred HHHHHHHHhhccC--Cc-EEEEecCCCchHHHHHHHHHHHHhC
Q 000496 292 EGLNFLRFSWSKQ--TH-VILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 292 egvnwL~~~~~~~--~~-~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
..+..|......+ .+ .|+.-..|+|||..|..++..+...
T Consensus 23 ~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 23 PVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred HHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3344444444332 23 4789999999999999999888653
No 271
>PRK08084 DNA replication initiation factor; Provisional
Probab=84.73 E-value=5.4 Score=45.53 Aligned_cols=28 Identities=21% Similarity=0.103 Sum_probs=22.3
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 304 QTHVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
....+|.-+.|+|||..+.++...+...
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~ 72 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQR 72 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4567899999999998887777766543
No 272
>PRK08116 hypothetical protein; Validated
Probab=84.60 E-value=8.1 Score=45.11 Aligned_cols=45 Identities=20% Similarity=0.252 Sum_probs=32.7
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHH
Q 000496 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWE 349 (1462)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~ 349 (1462)
+.+.+|.-+.|+|||..+.+++..+...+ .+++++.-..++....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~-~~v~~~~~~~ll~~i~ 158 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG-VPVIFVNFPQLLNRIK 158 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEEHHHHHHHHH
Confidence 34588999999999999999999988763 3666555444444333
No 273
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.56 E-value=4 Score=49.75 Aligned_cols=41 Identities=24% Similarity=0.176 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhccCC--c-EEEEecCCCchHHHHHHHHHHHHh
Q 000496 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (1462)
Q Consensus 290 QlegvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~L~~ 330 (1462)
|...+..+...+..++ + .+|.-+.|+|||..|-+++..+..
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 4455555555555442 3 489999999999999999888763
No 274
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=84.45 E-value=1.9 Score=36.55 Aligned_cols=42 Identities=12% Similarity=0.416 Sum_probs=35.2
Q ss_pred CChHHHHHHHHHHHhcCCCCcchhhhchhhc-CCCHHHHHHHHHH
Q 000496 969 FSQNQRAAFVQILMRFGVGDFDWKEFTPRLK-QKSYEEIREYGIL 1012 (1462)
Q Consensus 969 F~~w~Rr~Fv~a~~KyG~~~~~~~~ia~eL~-~Ks~eEvk~Ya~l 1012 (1462)
|+..+-..|++++.+||.+ +|..|+..+. ++|..+++.+...
T Consensus 4 Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~~~Rt~~qc~~~~~~ 46 (48)
T PF00249_consen 4 WTEEEDEKLLEAVKKYGKD--NWKKIAKRMPGGRTAKQCRSRYQN 46 (48)
T ss_dssp S-HHHHHHHHHHHHHSTTT--HHHHHHHHHSSSSTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc--HHHHHHHHcCCCCCHHHHHHHHHh
Confidence 6777788999999999965 4789999999 9999999977543
No 275
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=84.07 E-value=2.4 Score=34.35 Aligned_cols=42 Identities=12% Similarity=0.388 Sum_probs=35.9
Q ss_pred CChHHHHHHHHHHHhcCCCCcchhhhchhhcCCCHHHHHHHHHH
Q 000496 969 FSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGIL 1012 (1462)
Q Consensus 969 F~~w~Rr~Fv~a~~KyG~~~~~~~~ia~eL~~Ks~eEvk~Ya~l 1012 (1462)
|+..+...|++++.+||.. +|..|+..+.++|..+|+.|...
T Consensus 2 Wt~eE~~~l~~~~~~~g~~--~w~~Ia~~~~~rs~~~~~~~~~~ 43 (45)
T cd00167 2 WTEEEDELLLEAVKKYGKN--NWEKIAKELPGRTPKQCRERWRN 43 (45)
T ss_pred CCHHHHHHHHHHHHHHCcC--CHHHHHhHcCCCCHHHHHHHHHH
Confidence 6777888999999999963 47899999999999999988654
No 276
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=83.99 E-value=3.6 Score=50.63 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.1
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 306 ~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
..|+.-..|+|||..|.++...+...
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 36789999999999999998887654
No 277
>PRK14974 cell division protein FtsY; Provisional
Probab=83.68 E-value=6.6 Score=47.33 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=30.0
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc----hhHHHHHHHH
Q 000496 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL----STLRNWEREF 352 (1462)
Q Consensus 306 ~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~----sll~qW~~E~ 352 (1462)
-.++.-..|.|||.++..++..+...+. +++++... ....||..-.
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~-~V~li~~Dt~R~~a~eqL~~~a 191 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGF-SVVIAAGDTFRAGAIEQLEEHA 191 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEecCCcCcHHHHHHHHHHH
Confidence 3567889999999988888877765443 55555432 3445664433
No 278
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=83.61 E-value=6.6 Score=46.61 Aligned_cols=39 Identities=28% Similarity=0.335 Sum_probs=24.6
Q ss_pred ceeEecccccccCCcc--hHHHHHHHhccccceEeeccccc
Q 000496 429 WQCMIVDEGHRLKNKD--SKLFSSLKQYSTRHRVLLTGTPL 467 (1462)
Q Consensus 429 w~~VIVDEAHrlKN~~--Sk~~~~l~~l~~~~rLLLTGTPl 467 (1462)
..+|||||+|++.... ..+...+.......++++|++..
T Consensus 101 ~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 101 GKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 4689999999983322 22333344455666788887643
No 279
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=83.54 E-value=3.6 Score=52.23 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhccCC---cEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 290 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
|...+..|...+..++ ..||.-+.|+|||..|-.++..+...
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4445555555445544 67899999999999999999888643
No 280
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.30 E-value=7 Score=48.26 Aligned_cols=42 Identities=19% Similarity=0.131 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhccC---CcEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 290 QlegvnwL~~~~~~~---~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
|...+..|...+.++ ...|+.-+.|+|||..|.+++..+...
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 334444555555554 236789999999999999999988653
No 281
>PRK08727 hypothetical protein; Validated
Probab=82.79 E-value=5.4 Score=45.45 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=22.3
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhCC
Q 000496 306 HVILADEMGLGKTIQSIAFLASLFGER 332 (1462)
Q Consensus 306 ~~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1462)
..+|.-..|+|||..+.++...+...+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~ 69 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAG 69 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 478999999999998888887776554
No 282
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=82.56 E-value=9.7 Score=50.88 Aligned_cols=60 Identities=13% Similarity=0.024 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHH
Q 000496 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (1462)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~ 346 (1462)
+..|-+-|.+++..+. ..++-.+|....|+|||...-+++..+...+ ..+++++|.....
T Consensus 350 ~~~Ls~~Q~~Av~~i~---~s~~~~il~G~aGTGKTtll~~i~~~~~~~g-~~V~~~ApTg~Aa 409 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVT---GSGDIAVVVGRAGTGKSTMLKAAREAWEAAG-YRVIGAALSGKAA 409 (744)
T ss_pred cCCCCHHHHHHHHHHh---cCCCEEEEEecCCCCHHHHHHHHHHHHHhCC-CeEEEEeCcHHHH
Confidence 3568999999998763 2245688999999999988766665554432 4788899986553
No 283
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=82.48 E-value=3.6 Score=49.45 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
.++|+|.....-+...-.-....++.-+.|+|||..|..|+..+...
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 36889988876665541112235678999999999999999998754
No 284
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=82.19 E-value=4.6 Score=48.92 Aligned_cols=45 Identities=20% Similarity=0.159 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHhh-c--cCCcEEEEecCCCchHHHHHHHHHHHHh
Q 000496 286 LHPYQLEGLNFLRFSW-S--KQTHVILADEMGLGKTIQSIAFLASLFG 330 (1462)
Q Consensus 286 LrpyQlegvnwL~~~~-~--~~~~~ILADemGLGKTiqaIa~l~~L~~ 330 (1462)
=|..|++.+.-.+..+ . ...+.+|.-+.|+|||..+-.++..+..
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3778888874443332 2 2356889999999999999888887754
No 285
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=81.91 E-value=17 Score=46.98 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=73.0
Q ss_pred hchHHHHHHHHHHHHHHcCCeEEEEecch----hhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEE
Q 000496 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQ----HMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1462)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~----~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfL 681 (1462)
.|||..+..--+-...+.|..+.+...-- ...+-+.++|...|+.+..++|++.+..|.+++.+..++..+ ++
T Consensus 293 GSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~---iv 369 (677)
T COG1200 293 GSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEID---IV 369 (677)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCC---EE
Confidence 57776554333334456788888877642 345667888888899999999999999999999999765555 78
Q ss_pred eecccc-ccccCcccCCEEEEecC
Q 000496 682 LSTRAG-GLGINLATADTVIIYDS 704 (1462)
Q Consensus 682 lSTrag-g~GINL~~Ad~VIi~D~ 704 (1462)
+.|.|+ -..+++...-.||+=+.
T Consensus 370 VGTHALiQd~V~F~~LgLVIiDEQ 393 (677)
T COG1200 370 VGTHALIQDKVEFHNLGLVIIDEQ 393 (677)
T ss_pred EEcchhhhcceeecceeEEEEecc
Confidence 889985 77888888888887554
No 286
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=81.83 E-value=5.2 Score=51.88 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhccCC---cEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 290 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
|-..+..|...+..++ ..||.-..|+|||..|..++..|...
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 3344444544444443 46889999999999999999988654
No 287
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=81.69 E-value=2.9 Score=34.43 Aligned_cols=45 Identities=16% Similarity=0.458 Sum_probs=37.8
Q ss_pred CCChHHHHHHHHHHHhcCCCCcchhhhchhhcCCCHHHHHHHHHHHH
Q 000496 968 GFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFL 1014 (1462)
Q Consensus 968 GF~~w~Rr~Fv~a~~KyG~~~~~~~~ia~eL~~Ks~eEvk~Ya~lF~ 1014 (1462)
.|+..+...|++++.+||.. +|..|+..+.++|..+++.+...++
T Consensus 3 ~Wt~~E~~~l~~~~~~~g~~--~w~~Ia~~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 3 EWTEEEDELLIELVKKYGKN--NWEKIAKELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCHHHHHHHHHHHHHHCcC--CHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 47778888999999999964 4678999999999999998866543
No 288
>PF13245 AAA_19: Part of AAA domain
Probab=81.37 E-value=4 Score=38.29 Aligned_cols=44 Identities=25% Similarity=0.275 Sum_probs=33.2
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhC---CCCcEEEEEcchhHHH
Q 000496 304 QTHVILADEMGLGKTIQSIAFLASLFGE---RISPHLVVAPLSTLRN 347 (1462)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~---~~~p~LIVvP~sll~q 347 (1462)
+.-.++.-..|+|||.+++..+.++... ...++||++|.....+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD 56 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH
Confidence 4445669999999999998888888742 2348999999855443
No 289
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.30 E-value=7.9 Score=50.30 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhccCC--c-EEEEecCCCchHHHHHHHHHHHHh
Q 000496 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (1462)
Q Consensus 290 QlegvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~L~~ 330 (1462)
|-..+..|...+..++ + .|+.-+.|+|||..+..++..+..
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4455555655555543 2 388999999999999999988854
No 290
>PF13173 AAA_14: AAA domain
Probab=81.26 E-value=7.8 Score=39.67 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=21.0
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHH
Q 000496 304 QTHVILADEMGLGKTIQSIAFLASLF 329 (1462)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~ 329 (1462)
++-.+|.-..|.|||..+..++..+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 45578889999999998887777665
No 291
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=81.22 E-value=10 Score=46.47 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=29.4
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEc-c---hhHHHHH
Q 000496 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-L---STLRNWE 349 (1462)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP-~---sll~qW~ 349 (1462)
+...|.-..|.|||.++..++..+...+. .++++.. . ..+.||.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~Gk-kVglI~aDt~RiaAvEQLk 289 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKK-TVGFITTDHSRIGTVQQLQ 289 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHH
Confidence 34567888999999998888887765543 4555544 2 3455554
No 292
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.18 E-value=6.2 Score=50.53 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=27.4
Q ss_pred HHHHHHHHhhccCC---cEEEEecCCCchHHHHHHHHHHHHh
Q 000496 292 EGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFG 330 (1462)
Q Consensus 292 egvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~ 330 (1462)
..++.|...+..++ ..|+.-+.|+|||..|..++..+..
T Consensus 23 ~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 23 HALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33344444444433 3578999999999999999988864
No 293
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=81.15 E-value=7.3 Score=49.72 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=27.0
Q ss_pred HHHHHHHhhccCC--c-EEEEecCCCchHHHHHHHHHHHHhC
Q 000496 293 GLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 293 gvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
.+..|...+..+. + .++.-+.|.|||..|.+++..+...
T Consensus 22 v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 22 VSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred HHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 3344444444443 2 3789999999999999999988643
No 294
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.97 E-value=9.5 Score=48.65 Aligned_cols=96 Identities=13% Similarity=0.149 Sum_probs=72.7
Q ss_pred hhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHh-cCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEee
Q 000496 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS 683 (1462)
Q Consensus 605 ~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~-~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlS 683 (1462)
..|||..+...++......|.++||.+.......-+.+.|.. .|..+..++|.++..+|..+..+...+.. .|++.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~---~IVVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEI---LVVIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCC---CEEEC
Confidence 478999998888888888899999999998887777777754 37789999999999999888776654333 26777
Q ss_pred ccccccccCcccCCEEEEecC
Q 000496 684 TRAGGLGINLATADTVIIYDS 704 (1462)
Q Consensus 684 Tragg~GINL~~Ad~VIi~D~ 704 (1462)
|+..- =+-+.....||+-+-
T Consensus 83 Trsal-f~p~~~l~lIIVDEe 102 (505)
T TIGR00595 83 TRSAL-FLPFKNLGLIIVDEE 102 (505)
T ss_pred ChHHH-cCcccCCCEEEEECC
Confidence 77632 234556777777653
No 295
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.78 E-value=5.6 Score=50.17 Aligned_cols=25 Identities=36% Similarity=0.318 Sum_probs=21.4
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhC
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
.||.-+.|+|||..|-+++..+...
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhccc
Confidence 5899999999999999888887543
No 296
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=80.67 E-value=10 Score=45.41 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHhhccCC---cEEEEecCCCchHHHHHHHHHHHHhCC
Q 000496 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1462)
.++|+|......+...+..++ ..++....|+||+..|.+|+..+....
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 589999999888877766554 367899999999999999999987654
No 297
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=80.54 E-value=7.8 Score=47.32 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhccCC---cEEEEecCCCchHHHHHHHHHHHHhCC
Q 000496 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1462)
Q Consensus 290 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1462)
|-.++..|...+..++ ..++.-..|+|||..|.+|+.+++...
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 5566666666666653 367899999999999999999998643
No 298
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=80.37 E-value=11 Score=47.30 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=30.2
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhCCCC-cEEEEEcchhHHHH
Q 000496 305 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTLRNW 348 (1462)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L~~~~~~-p~LIVvP~sll~qW 348 (1462)
+..+|.-..|+|||..+-++...+.....+ .++.|.....+..+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 347899999999999998888888765434 44444443444333
No 299
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=80.29 E-value=1.5 Score=38.71 Aligned_cols=26 Identities=42% Similarity=0.837 Sum_probs=21.2
Q ss_pred cCHHHHHHHHHHHHhhccchhHHhhhC
Q 000496 1084 WKEEHDSLLLRAVLKHGYGRWQAIVDD 1110 (1462)
Q Consensus 1084 w~~eeDr~LL~~i~k~Gyg~We~Ik~D 1110 (1462)
||.+||..|+.++.+||. +|..|-.-
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~ 26 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEH 26 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHH
Confidence 999999999999999995 79888443
No 300
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=80.09 E-value=8.6 Score=45.19 Aligned_cols=43 Identities=26% Similarity=0.268 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhcc--CCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 289 YQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 289 yQlegvnwL~~~~~~--~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
+|-..|+-|...... ..+.++.-..|+|||-++++|...|+..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~ 84 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCE 84 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCc
Confidence 677777776555444 4456888999999999999999998763
No 301
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=79.79 E-value=7.6 Score=41.72 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhccCC--c-EEEEecCCCchHHHHHHHHHHHHhCCC
Q 000496 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGERI 333 (1462)
Q Consensus 290 QlegvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~L~~~~~ 333 (1462)
|.+.+..|...+..++ + .|+..+.|.||+..|.+|+..++....
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~ 48 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNP 48 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 5556666666665543 3 488889999999999999999987643
No 302
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=79.68 E-value=1.7 Score=52.74 Aligned_cols=65 Identities=26% Similarity=0.549 Sum_probs=45.2
Q ss_pred cccccccccCC-----CCCeeecCCCCCccccccCCCCC-CCCCC-------CCCCCCccCCCCCcccccccccccCCcc
Q 000496 49 AKDDSCQACGE-----SENLMSCDTCTYAYHAKCLVPPL-KAPPS-------GSWRCPECVSPLNDIDKILDCEMRPTVA 115 (1462)
Q Consensus 49 ~~~~~C~~C~~-----~g~ll~Cd~C~~~~H~~Cl~Ppl-~~~p~-------~~W~C~~C~~~~~didkIL~wR~rP~~~ 115 (1462)
..-.+|.||-. .|+++.||.|+-..|-.|.---- .++|+ ..|||--|...... =+|.++|...
T Consensus 117 kk~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~----P~CElCPn~~ 192 (707)
T KOG0957|consen 117 KKAVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSL----PHCELCPNRF 192 (707)
T ss_pred ccceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCC----CccccCCCcC
Confidence 34558999964 36699999999999999984320 12232 45999999875432 3577788766
Q ss_pred CC
Q 000496 116 GD 117 (1462)
Q Consensus 116 ~~ 117 (1462)
+.
T Consensus 193 Gi 194 (707)
T KOG0957|consen 193 GI 194 (707)
T ss_pred Cc
Confidence 54
No 303
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=79.23 E-value=5.8 Score=44.12 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=24.9
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEc
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP 341 (1462)
.+|.-.+|.|||.++.-+++++... ..++.+|+-
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~ 37 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK-GKKVALISA 37 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc-cccceeecC
Confidence 4678899999999998888888766 345555554
No 304
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.98 E-value=9.4 Score=49.38 Aligned_cols=42 Identities=21% Similarity=0.141 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhccC--Cc-EEEEecCCCchHHHHHHHHHHHHhC
Q 000496 290 QLEGLNFLRFSWSKQ--TH-VILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 290 QlegvnwL~~~~~~~--~~-~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
|...+..|...+..+ .+ .|+.-..|+|||..|..|+..+...
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 444555555444443 23 4789999999999999999888743
No 305
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.90 E-value=11 Score=47.88 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=26.9
Q ss_pred HHHHHHHhhccC---CcEEEEecCCCchHHHHHHHHHHHHh
Q 000496 293 GLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (1462)
Q Consensus 293 gvnwL~~~~~~~---~~~ILADemGLGKTiqaIa~l~~L~~ 330 (1462)
.+..|...+..+ ...|+.-..|+|||..|..++..+..
T Consensus 21 vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 21 LVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcC
Confidence 334444444443 35789999999999999888877754
No 306
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=78.51 E-value=8.7 Score=47.50 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=26.6
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhCCCC-cEEEEE
Q 000496 306 HVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVA 340 (1462)
Q Consensus 306 ~~ILADemGLGKTiqaIa~l~~L~~~~~~-p~LIVv 340 (1462)
..+|.-..|+|||..+-++...+.....+ .++.+.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 46799999999999998888888765433 455553
No 307
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=78.39 E-value=1.6 Score=47.37 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=25.8
Q ss_pred ccccEEEecHHHHHhhhc--cc--CCCcceeEecccccccCC
Q 000496 405 IKFDVLLTSYEMINLDSA--SL--KPIKWQCMIVDEGHRLKN 442 (1462)
Q Consensus 405 ~kfdVvItSYe~l~~d~~--~L--~~i~w~~VIVDEAHrlKN 442 (1462)
...||||++|..+..... .+ ...+-.+|||||||+|-+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 467899999999865422 22 123446899999999854
No 308
>PRK05580 primosome assembly protein PriA; Validated
Probab=78.29 E-value=14 Score=49.03 Aligned_cols=95 Identities=11% Similarity=0.109 Sum_probs=72.5
Q ss_pred hchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHh-cCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeec
Q 000496 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1462)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~-~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlST 684 (1462)
.|||......++......|.++||.+.......-+.+.|.. .|.....++|+++..+|.+...+...+.. .++++|
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~---~IVVgT 248 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEA---KVVIGA 248 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCC---CEEEec
Confidence 58898888777877777899999999998887777777754 47889999999999999888777755433 367788
Q ss_pred cccccccCcccCCEEEEecC
Q 000496 685 RAGGLGINLATADTVIIYDS 704 (1462)
Q Consensus 685 ragg~GINL~~Ad~VIi~D~ 704 (1462)
+..- =+.+.....||+-+-
T Consensus 249 rsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 249 RSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred cHHh-cccccCCCEEEEECC
Confidence 7532 255667778877764
No 309
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=78.17 E-value=10 Score=51.87 Aligned_cols=60 Identities=13% Similarity=-0.012 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHH
Q 000496 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (1462)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~ 346 (1462)
+..|.+-|.+++..+. ....-++|.-..|+|||.+.-+ +..++......++.++|+....
T Consensus 344 g~~Ls~eQr~Av~~il---~s~~v~vv~G~AGTGKTT~l~~-~~~~~e~~G~~V~~~ApTGkAA 403 (988)
T PRK13889 344 GLVLSGEQADALAHVT---DGRDLGVVVGYAGTGKSAMLGV-AREAWEAAGYEVRGAALSGIAA 403 (988)
T ss_pred CCCCCHHHHHHHHHHh---cCCCeEEEEeCCCCCHHHHHHH-HHHHHHHcCCeEEEecCcHHHH
Confidence 4579999999998763 2234578999999999987444 4433333334788889976543
No 310
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=77.93 E-value=12 Score=47.07 Aligned_cols=48 Identities=15% Similarity=-0.015 Sum_probs=31.9
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhCCCC-cEEEEEcchhHHHHHHHH
Q 000496 305 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTLRNWEREF 352 (1462)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L~~~~~~-p~LIVvP~sll~qW~~E~ 352 (1462)
...+|.-+.|+|||..+-++..++.....+ .++.|.+...+......+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH
Confidence 447799999999998888888777654333 555555545444444333
No 311
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=77.79 E-value=1.6 Score=59.53 Aligned_cols=49 Identities=41% Similarity=1.155 Sum_probs=42.8
Q ss_pred ccccccccCCCCC--eeecCCCCCccccccCCCCCCCCCCCCCCCCccCCC
Q 000496 50 KDDSCQACGESEN--LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1462)
Q Consensus 50 ~~~~C~~C~~~g~--ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~~ 98 (1462)
....|..|..+.. ++.|+.|...||..|+.|++..++.+.|.|+.|...
T Consensus 154 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred cchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 3456999988764 349999999999999999999999999999999864
No 312
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=77.36 E-value=1.1 Score=47.60 Aligned_cols=47 Identities=28% Similarity=0.760 Sum_probs=33.0
Q ss_pred cccccCC------CCCeeecCCCCCccccccCCCCCC------CCCCCC--CCCCccCCCC
Q 000496 53 SCQACGE------SENLMSCDTCTYAYHAKCLVPPLK------APPSGS--WRCPECVSPL 99 (1462)
Q Consensus 53 ~C~~C~~------~g~ll~Cd~C~~~~H~~Cl~Ppl~------~~p~~~--W~C~~C~~~~ 99 (1462)
.|.+|+. .|.|+.|.+|..+||..||-|--. .+..+. -.|..|....
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~ 61 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIA 61 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChh
Confidence 4777853 245999999999999999976432 122344 3788888644
No 313
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=77.34 E-value=7.3 Score=45.56 Aligned_cols=54 Identities=20% Similarity=0.138 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC---CCcEEEEEcchhH
Q 000496 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTL 345 (1462)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~---~~p~LIVvP~sll 345 (1462)
|.+-|...+++ ..+..++-...|+|||.+.+.-+.++...+ +..+|+|+++...
T Consensus 1 l~~eQ~~~i~~------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~a 57 (315)
T PF00580_consen 1 LTDEQRRIIRS------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAA 57 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHH
Confidence 45778888764 356677777799999999988888877654 2389999997553
No 314
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=77.17 E-value=6.8 Score=49.92 Aligned_cols=129 Identities=18% Similarity=0.191 Sum_probs=69.3
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhCCCC-cEEEEEcchhH-----HHHHHHHHHHCCCCeEEEEEcChhHHHHHHH
Q 000496 303 KQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTL-----RNWEREFATWAPQMNVVMYVGTSQARNIIRE 376 (1462)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~-p~LIVvP~sll-----~qW~~E~~k~~P~l~vvvy~G~~~~R~~i~~ 376 (1462)
+.-.+.| -+=-=|||...+.+|..+...-.+ .+..|+-..-+ ..-...+.+|+|.-+++.-.|..-
T Consensus 202 QkaTVFL-VPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI------- 273 (668)
T PHA03372 202 QKATVFL-VPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVI------- 273 (668)
T ss_pred ccceEEE-ecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEE-------
Confidence 3333433 355678999988888888775444 78888874332 334455688998766543322110
Q ss_pred hhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEecccccccCCcchHHHHHHHhccc
Q 000496 377 YEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYST 456 (1462)
Q Consensus 377 ~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEAHrlKN~~Sk~~~~l~~l~~ 456 (1462)
-+.++ ..+.-++..| ......++.-.|++|+|||||-++...=...--+...+.
T Consensus 274 -~~s~p---------------------g~Kst~~fas----c~n~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~~ 327 (668)
T PHA03372 274 -SIDHR---------------------GAKSTALFAS----CYNTNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQNT 327 (668)
T ss_pred -EEecC---------------------CCcceeeehh----hccCccccCCCCCEEEEehhhccCHHHHHHhhhhhcccC
Confidence 01111 0111122222 122346677789999999999987533222222222233
Q ss_pred cceEeeccc
Q 000496 457 RHRVLLTGT 465 (1462)
Q Consensus 457 ~~rLLLTGT 465 (1462)
...+.+|.|
T Consensus 328 ~KiIfISS~ 336 (668)
T PHA03372 328 TKIIFISST 336 (668)
T ss_pred ceEEEEeCC
Confidence 344555544
No 315
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.13 E-value=9.8 Score=49.67 Aligned_cols=42 Identities=19% Similarity=0.079 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhccC---CcEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 290 QlegvnwL~~~~~~~---~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
|...+..|...+..+ ...|+.-+.|+|||..|.+++..+...
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 444455555555554 345889999999999999999998653
No 316
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.76 E-value=38 Score=44.16 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=26.7
Q ss_pred HHHHHHhhccC---CcEEEEecCCCchHHHHHHHHHHHHh
Q 000496 294 LNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (1462)
Q Consensus 294 vnwL~~~~~~~---~~~ILADemGLGKTiqaIa~l~~L~~ 330 (1462)
+..|...+.++ ...|+.-+.|+|||..|..|+..+..
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 34444444443 34567999999999999999988864
No 317
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=76.55 E-value=21 Score=46.42 Aligned_cols=54 Identities=19% Similarity=0.062 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc
Q 000496 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1462)
Q Consensus 288 pyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~ 342 (1462)
|+=+.-++-+...+.+.-.+++ -+=|-|||..+..++..+.......++|.+|.
T Consensus 172 ~~~~~~id~~~~~fkq~~tV~t-aPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~ 225 (752)
T PHA03333 172 PRTLREIDRIFDEYGKCYTAAT-VPRRCGKTTIMAIILAAMISFLEIDIVVQAQR 225 (752)
T ss_pred hhhHHHHHHHHHHHhhcceEEE-eccCCCcHHHHHHHHHHHHHhcCCeEEEECCC
Confidence 4444556666666555555555 46899999887666655554222378999995
No 318
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=76.29 E-value=3.1 Score=36.91 Aligned_cols=28 Identities=32% Similarity=0.589 Sum_probs=25.2
Q ss_pred CCccCHHHHHHHHHHHHhhccchh---HHhh
Q 000496 1081 GKFWKEEHDSLLLRAVLKHGYGRW---QAIV 1108 (1462)
Q Consensus 1081 ~~~w~~eeDr~LL~~i~k~Gyg~W---e~Ik 1108 (1462)
...||+|+-...|.+|..+|.|.| ..|.
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~ 33 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRIL 33 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHH
Confidence 457999999999999999999999 7764
No 319
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.22 E-value=11 Score=47.89 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhccCC--cE-EEEecCCCchHHHHHHHHHHHHhC
Q 000496 290 QLEGLNFLRFSWSKQT--HV-ILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 290 QlegvnwL~~~~~~~~--~~-ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
|...+..|......+. +. ++.-+.|+|||..|.+++..+...
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3344555544444443 33 899999999999999999888653
No 320
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=75.79 E-value=36 Score=44.30 Aligned_cols=108 Identities=17% Similarity=0.224 Sum_probs=60.5
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhCCCC-cEEEEEcc-hhHHHHHHH----HHHHCCCCeEEEEEcChhHHHHHHH
Q 000496 303 KQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STLRNWERE----FATWAPQMNVVMYVGTSQARNIIRE 376 (1462)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~-p~LIVvP~-sll~qW~~E----~~k~~P~l~vvvy~G~~~~R~~i~~ 376 (1462)
+.+-.+..-.==-|||......+..+.....+ .+++++|. ++...--.| +++|+|...+....|. .| .
T Consensus 253 kqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-----~I-~ 326 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-----TI-S 326 (738)
T ss_pred hccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-----EE-E
Confidence 44555666677789999877666655544334 89999995 444444444 4567765433222221 11 1
Q ss_pred hhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEecccccccCC
Q 000496 377 YEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (1462)
Q Consensus 377 ~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEAHrlKN 442 (1462)
+.++.+ .+--+...|- .....++...+++|||||||-++.
T Consensus 327 --i~f~nG--------------------~kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk~ 366 (738)
T PHA03368 327 --FSFPDG--------------------SRSTIVFASS----HNTNGIRGQDFNLLFVDEANFIRP 366 (738)
T ss_pred --EEecCC--------------------CccEEEEEec----cCCCCccCCcccEEEEechhhCCH
Confidence 111111 0111222211 234456777899999999999975
No 321
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.79 E-value=11 Score=49.21 Aligned_cols=42 Identities=26% Similarity=0.265 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhccCC--c-EEEEecCCCchHHHHHHHHHHHHhC
Q 000496 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 290 QlegvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
|...+..|...+..++ + .|+.-..|+|||..+..++..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4444555555444443 3 4889999999999999999888753
No 322
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=75.68 E-value=5.1 Score=43.80 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=30.2
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 000496 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (1462)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sl 344 (1462)
.++.|.+|.-.+|+|||..|.+++..+...+ .+++.+.-..+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g-~~v~f~~~~~L 86 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKG-YSVLFITASDL 86 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEEHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCC-cceeEeecCce
Confidence 5678899999999999999999999888743 35666643333
No 323
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=75.57 E-value=14 Score=43.74 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=27.8
Q ss_pred cccCCCcceeEeccccccc-CCcch---HHHHHHHhccccce--Eeecccc
Q 000496 422 ASLKPIKWQCMIVDEGHRL-KNKDS---KLFSSLKQYSTRHR--VLLTGTP 466 (1462)
Q Consensus 422 ~~L~~i~w~~VIVDEAHrl-KN~~S---k~~~~l~~l~~~~r--LLLTGTP 466 (1462)
..|..+.-.+|||||.|++ .+... ....+|+.+....+ +.+.||+
T Consensus 139 ~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 139 RLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 4456667789999999996 33333 33444445544333 5666776
No 324
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=75.12 E-value=13 Score=49.03 Aligned_cols=111 Identities=21% Similarity=0.249 Sum_probs=87.8
Q ss_pred EeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHhhhchHHHHHHH
Q 000496 536 LRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDK 615 (1462)
Q Consensus 536 v~v~ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~k 615 (1462)
....++..|...+..|.... -+.+++|+.++ ..|||.++...
T Consensus 195 ~~~~Ln~~Q~~a~~~i~~~~-----------------------~~~~~~Ll~Gv---------------TGSGKTEvYl~ 236 (730)
T COG1198 195 EWLALNQEQQAAVEAILSSL-----------------------GGFAPFLLDGV---------------TGSGKTEVYLE 236 (730)
T ss_pred cccccCHHHHHHHHHHHHhc-----------------------ccccceeEeCC---------------CCCcHHHHHHH
Confidence 35678888888888775431 23567777764 37999999999
Q ss_pred HHHHHHHcCCeEEEEecchhhHHHHHHHHHhc-CCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeecccc
Q 000496 616 MMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (1462)
Q Consensus 616 lL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~-gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTrag 687 (1462)
++....++|+.+||...-+.....+.+.|..+ |.++..++++.+..+|.....+...+.. .+++.||++
T Consensus 237 ~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~---~vVIGtRSA 306 (730)
T COG1198 237 AIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEA---RVVIGTRSA 306 (730)
T ss_pred HHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCc---eEEEEechh
Confidence 99999999999999999988887777777554 7899999999999999999888865443 367777764
No 325
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=75.12 E-value=13 Score=45.65 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=35.4
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHH
Q 000496 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (1462)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~ 352 (1462)
..+.-.+|.-++|.|||..++.++..+...+ +++|.|.-.....|.....
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g-~~VlYvs~EEs~~qi~~Ra 129 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRG-GKVLYVSGEESPEQIKLRA 129 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCcCHHHHHHHH
Confidence 3455578899999999999998887775542 4788887655555544333
No 326
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=75.09 E-value=11 Score=48.64 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=21.8
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhC
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
.|+.-+.|.|||..|.+++..+...
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhccc
Confidence 5799999999999999999888643
No 327
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=74.64 E-value=12 Score=43.49 Aligned_cols=67 Identities=22% Similarity=0.249 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHH
Q 000496 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (1462)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~ 353 (1462)
+.-.++..+.-+...+..+.+.+|.-..|.|||..|+|+...+... ..+++++.-..++.+++..+.
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~-g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 87 IDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKA-GISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred hhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEEHHHHHHHHHHHHh
Confidence 3345555555444455688899999999999999999999999833 237777766666666655543
No 328
>PRK11054 helD DNA helicase IV; Provisional
Probab=74.43 E-value=16 Score=48.41 Aligned_cols=77 Identities=16% Similarity=0.105 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC---CCcEEEEEcchhHHHHHHH-HHHHCC--
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLRNWERE-FATWAP-- 357 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~---~~p~LIVvP~sll~qW~~E-~~k~~P-- 357 (1462)
..|.+.|.++|.. ..++.++....|+|||.+.++-+.+|...+ +..+|+++......+..++ +....+
T Consensus 195 ~~L~~~Q~~av~~------~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~ 268 (684)
T PRK11054 195 SPLNPSQARAVVN------GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTE 268 (684)
T ss_pred CCCCHHHHHHHhC------CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCC
Confidence 4589999999852 334556666799999999999999988653 2389999998777776665 555553
Q ss_pred CCeEEEEEc
Q 000496 358 QMNVVMYVG 366 (1462)
Q Consensus 358 ~l~vvvy~G 366 (1462)
.+.+-.||+
T Consensus 269 ~v~v~TFHS 277 (684)
T PRK11054 269 DITARTFHA 277 (684)
T ss_pred CcEEEeHHH
Confidence 334444443
No 329
>PRK06893 DNA replication initiation factor; Validated
Probab=74.37 E-value=20 Score=40.78 Aligned_cols=27 Identities=11% Similarity=-0.023 Sum_probs=21.8
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhCC
Q 000496 306 HVILADEMGLGKTIQSIAFLASLFGER 332 (1462)
Q Consensus 306 ~~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1462)
..+|.-..|+|||.-+.++...+...+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~ 67 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 358999999999998888887776553
No 330
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=74.32 E-value=18 Score=45.31 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=27.6
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhCCCC-cEEEEEc
Q 000496 305 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAP 341 (1462)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L~~~~~~-p~LIVvP 341 (1462)
...+|.-+.|+|||..+-++...+.....+ .++.|..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 357899999999999988888887765444 4555543
No 331
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=74.31 E-value=0.92 Score=51.33 Aligned_cols=46 Identities=15% Similarity=0.420 Sum_probs=34.5
Q ss_pred cccccccCCC---------CCeeecCCCCCccccccCCCCCCC---CCCCCCCCCccC
Q 000496 51 DDSCQACGES---------ENLMSCDTCTYAYHAKCLVPPLKA---PPSGSWRCPECV 96 (1462)
Q Consensus 51 ~~~C~~C~~~---------g~ll~Cd~C~~~~H~~Cl~Ppl~~---~p~~~W~C~~C~ 96 (1462)
...|..|-++ ..+++|..|..++|.+|+.-+..- +-.-.|.|..|.
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~ 315 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCE 315 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccH
Confidence 4568888654 239999999999999999665432 234679999986
No 332
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=74.27 E-value=13 Score=44.62 Aligned_cols=43 Identities=26% Similarity=0.312 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhccCC--cE-EEEecCCCchHHHHHHHHHHHHhC
Q 000496 289 YQLEGLNFLRFSWSKQT--HV-ILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 289 yQlegvnwL~~~~~~~~--~~-ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
.|...+..|...+..++ ++ ++.-+-|.|||..|..++..+...
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~ 55 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCL 55 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 35555566666655443 34 889999999999999999988754
No 333
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=74.05 E-value=13 Score=44.79 Aligned_cols=47 Identities=17% Similarity=0.274 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHhhccCC--c-EEEEecCCCchHHHHHHHHHHHHhCC
Q 000496 286 LHPYQLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGER 332 (1462)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1462)
++|+|...-.-|...+..++ + .++.-+.|+||+..|.+|+..+....
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 57888888777777766654 3 45789999999999999999987643
No 334
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=73.87 E-value=2.1 Score=37.32 Aligned_cols=30 Identities=27% Similarity=0.862 Sum_probs=25.8
Q ss_pred cccccccCC----CCCeeecCCCCCccccccCCC
Q 000496 51 DDSCQACGE----SENLMSCDTCTYAYHAKCLVP 80 (1462)
Q Consensus 51 ~~~C~~C~~----~g~ll~Cd~C~~~~H~~Cl~P 80 (1462)
...|.+|+. +++++.|..|...||..|...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 457999986 567999999999999999854
No 335
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=73.61 E-value=38 Score=41.53 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=29.1
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhC-CCCcEEEEEcc
Q 000496 302 SKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPL 342 (1462)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~-~~~p~LIVvP~ 342 (1462)
..++..+|.-.+|.|||.++..++..+... +..++.+|+..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D 176 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTD 176 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence 456677899999999999998888776433 33355555543
No 336
>PRK04132 replication factor C small subunit; Provisional
Probab=73.48 E-value=9.5 Score=51.17 Aligned_cols=49 Identities=14% Similarity=0.305 Sum_probs=30.3
Q ss_pred cceeEecccccccCCc-chHHHHHHHhccccceEeeccccccCCHHHHHH
Q 000496 428 KWQCMIVDEGHRLKNK-DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFM 476 (1462)
Q Consensus 428 ~w~~VIVDEAHrlKN~-~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~s 476 (1462)
++.++|+||||++-.. ...+.+.+.......+++|+.++...-+.-|.+
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS 679 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 679 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh
Confidence 4678999999999532 223334444445677888887765444444443
No 337
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=72.23 E-value=1.4 Score=41.95 Aligned_cols=43 Identities=26% Similarity=0.690 Sum_probs=29.2
Q ss_pred ccccCCCCC---eeecCCCCCccccccCCCCCCCCCCCCCCCCccCCC
Q 000496 54 CQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1462)
Q Consensus 54 C~~C~~~g~---ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~~ 98 (1462)
|..|.-+|+ ++.+ .|...||+.|+..-+.... ..=.||-|+.+
T Consensus 35 Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~~-~~~~CPmCR~~ 80 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQS-SKGQCPMCRQP 80 (85)
T ss_pred CCCccCCCCCCceeec-cCccHHHHHHHHHHHcccc-CCCCCCCcCCe
Confidence 444444554 4444 4999999999987776642 23489999864
No 338
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=71.98 E-value=20 Score=46.49 Aligned_cols=46 Identities=17% Similarity=-0.007 Sum_probs=30.7
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhCCCC-cEEEEEcchhHHHHHHH
Q 000496 306 HVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTLRNWERE 351 (1462)
Q Consensus 306 ~~ILADemGLGKTiqaIa~l~~L~~~~~~-p~LIVvP~sll~qW~~E 351 (1462)
..+|.-..|+|||.-+.++..++.....+ .++.+.-...+..+...
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~a 362 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINS 362 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHH
Confidence 37889999999999888888887654333 55555444444444333
No 339
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=71.63 E-value=15 Score=48.50 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=27.0
Q ss_pred HHHHHHHhhccC--Cc-EEEEecCCCchHHHHHHHHHHHHhC
Q 000496 293 GLNFLRFSWSKQ--TH-VILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 293 gvnwL~~~~~~~--~~-~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
.+..|......+ .+ .|+.-+.|.|||..|-.++..+...
T Consensus 26 ~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 26 IVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 334444444443 23 4789999999999999998887653
No 340
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.33 E-value=17 Score=46.12 Aligned_cols=41 Identities=27% Similarity=0.191 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhccCC--cE-EEEecCCCchHHHHHHHHHHHHh
Q 000496 290 QLEGLNFLRFSWSKQT--HV-ILADEMGLGKTIQSIAFLASLFG 330 (1462)
Q Consensus 290 QlegvnwL~~~~~~~~--~~-ILADemGLGKTiqaIa~l~~L~~ 330 (1462)
|...+..|......+. ++ ++.-+.|.|||..|..++..+..
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4444555555555443 33 67999999999999888887753
No 341
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=70.85 E-value=18 Score=46.73 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.0
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhC
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
.|+.-+-|+|||..|-.|+..+...
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4679999999999999888887543
No 342
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.39 E-value=27 Score=44.89 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.1
Q ss_pred EEEEecCCCchHHHHHHHHHHHHh
Q 000496 307 VILADEMGLGKTIQSIAFLASLFG 330 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~ 330 (1462)
.|+.-+.|+|||..|-.++..+..
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 41 YLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Confidence 489999999999999999888764
No 343
>PRK05642 DNA replication initiation factor; Validated
Probab=70.38 E-value=19 Score=41.08 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=23.7
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEE
Q 000496 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1462)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVv 340 (1462)
...+|.-+.|+|||.-+-++...+...+ ..++.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~-~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRG-EPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEee
Confidence 4567999999999987777666654432 2444443
No 344
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=70.15 E-value=3 Score=51.61 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=40.6
Q ss_pred cccccccccCCCCCeeecCCCCCccccccCCCCCCCC-CCCCCCCCccCCC
Q 000496 49 AKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAP-PSGSWRCPECVSP 98 (1462)
Q Consensus 49 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~-p~~~W~C~~C~~~ 98 (1462)
..+.+|+.|.-.|..+.|+.|-|+||..|+.|-.... ...-|.||.|..-
T Consensus 58 N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s~ 108 (588)
T KOG3612|consen 58 NIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYSF 108 (588)
T ss_pred CCCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCccccc
Confidence 4577899999999999999999999999998754332 2345999999863
No 345
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=69.81 E-value=8.5 Score=48.75 Aligned_cols=61 Identities=21% Similarity=0.282 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC-----CCcEEEEEcchhHHHHHHH
Q 000496 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAPLSTLRNWERE 351 (1462)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~-----~~p~LIVvP~sll~qW~~E 351 (1462)
+.+-|-+.+. ..+++-.|+.-..|+|||..|+.=+++|.... .+|+||+.|+-++..+...
T Consensus 213 IQkEQneIIR-----~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~ 278 (747)
T COG3973 213 IQKEQNEIIR-----FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISR 278 (747)
T ss_pred hhHhHHHHHh-----ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHH
Confidence 4445555543 24566678889999999999988888876543 2489999999888765443
No 346
>PRK04195 replication factor C large subunit; Provisional
Probab=69.41 E-value=31 Score=43.75 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=29.3
Q ss_pred CCHHHHHHH-HHHHHhhcc---CCcEEEEecCCCchHHHHHHHHHHH
Q 000496 286 LHPYQLEGL-NFLRFSWSK---QTHVILADEMGLGKTIQSIAFLASL 328 (1462)
Q Consensus 286 LrpyQlegv-nwL~~~~~~---~~~~ILADemGLGKTiqaIa~l~~L 328 (1462)
.++.++.-+ .|+ ..|.+ ....+|.-+.|+|||..+-+++..+
T Consensus 18 g~~~~~~~l~~~l-~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 18 GNEKAKEQLREWI-ESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCHHHHHHHHHHH-HHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 445555555 444 44444 4678999999999999888777765
No 347
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.21 E-value=35 Score=44.41 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.5
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhC
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
.|+.-+-|+|||..+..++..+...
T Consensus 41 yLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 41 FLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcCC
Confidence 4788999999999999999888643
No 348
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=69.12 E-value=24 Score=46.74 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=70.2
Q ss_pred hchHHHHHHHHHHHHHHcCCeEEEEecchhhHH----HHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEE
Q 000496 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLD----LLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1462)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ld----iLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfL 681 (1462)
.|||..+..-.+-.....|.+++|.+.....+. .+..++...|+++..++|+++..+|..++.....+... ++
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~---Iv 368 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEAD---IV 368 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCC---EE
Confidence 688876544444344457899999998866544 45556666689999999999999999999988764443 56
Q ss_pred eeccc-cccccCcccCCEEEEecCC
Q 000496 682 LSTRA-GGLGINLATADTVIIYDSD 705 (1462)
Q Consensus 682 lSTra-gg~GINL~~Ad~VIi~D~d 705 (1462)
+.|.+ ....+.+.....||+=+-+
T Consensus 369 VgT~~ll~~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVIIDEQH 393 (681)
T ss_pred EchHHHhcccchhcccceEEEechh
Confidence 66654 4556778888888876654
No 349
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=69.01 E-value=16 Score=49.51 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhh--ccCCcEEEEecCCCchHHHHHHHHHHHHh
Q 000496 290 QLEGLNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1462)
Q Consensus 290 QlegvnwL~~~~--~~~~~~ILADemGLGKTiqaIa~l~~L~~ 330 (1462)
|-+-+..++..+ ....+.||.-+.|.|||..+=.++..+..
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 333455665433 33568999999999999988777777654
No 350
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=68.94 E-value=16 Score=45.62 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=27.1
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEc
Q 000496 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1462)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP 341 (1462)
...+++-..|.|||.++..++.++...+..+.||-+.
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4467889999999999998888887655434444443
No 351
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=68.54 E-value=17 Score=41.77 Aligned_cols=52 Identities=27% Similarity=0.307 Sum_probs=32.5
Q ss_pred hccCC-cEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHH------HHHHHHHH
Q 000496 301 WSKQT-HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR------NWEREFAT 354 (1462)
Q Consensus 301 ~~~~~-~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~------qW~~E~~k 354 (1462)
...++ -+.+.-+.|+|||+..=+++..+-.. .-.+|+.|+.++. -|..++..
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d--~~~~v~i~~~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRRALLASLNED--QVAVVVIDKPTLSDATLLEAIVADLES 105 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHHHHHHhcCCC--ceEEEEecCcchhHHHHHHHHHHHhcc
Confidence 34444 46688999999999887555554322 2455678875553 35555543
No 352
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=68.49 E-value=2.1 Score=50.01 Aligned_cols=21 Identities=52% Similarity=1.001 Sum_probs=19.8
Q ss_pred HHhhhhccCCccccccccChh
Q 000496 131 KQYLVKWKGLSYLHCTWVPEK 151 (1462)
Q Consensus 131 ~eYlVKWkg~Sy~H~tWvpe~ 151 (1462)
.+|||||+|+..-.++|.|+.
T Consensus 64 ~eYlvkW~Gy~~~~ntWEPee 84 (270)
T KOG1911|consen 64 IEYLVKWKGYPDPDNTWEPEE 84 (270)
T ss_pred ceeeeecCCCCCccccCCchh
Confidence 579999999999999999997
No 353
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=68.16 E-value=20 Score=45.05 Aligned_cols=37 Identities=24% Similarity=0.120 Sum_probs=27.0
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc
Q 000496 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1462)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~ 342 (1462)
...+|.-+.|+|||..+-++...+...+ .+++.+...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~-~~v~yi~~~ 178 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESG-GKILYVRSE 178 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcC-CCEEEeeHH
Confidence 4578899999999999888888876543 355555433
No 354
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=68.12 E-value=17 Score=44.02 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHhhccCCc-EEEEecCCCchHHHHHHHHHHHHhCC
Q 000496 286 LHPYQLEGLNFLRFSWSKQTH-VILADEMGLGKTIQSIAFLASLFGER 332 (1462)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~-~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1462)
++|+|...-+.|.....+-.+ .++.-..|.|||..|..|+..+....
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 478888777666554333333 45788999999999999999987653
No 355
>CHL00095 clpC Clp protease ATP binding subunit
Probab=67.62 E-value=1.8e+02 Score=39.72 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=21.6
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhC
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
.++.-++|.|||..|-++...++..
T Consensus 542 ~lf~Gp~GvGKt~lA~~LA~~l~~~ 566 (821)
T CHL00095 542 FLFSGPTGVGKTELTKALASYFFGS 566 (821)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Confidence 5789999999999999998888654
No 356
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=67.46 E-value=1.2 Score=58.75 Aligned_cols=51 Identities=22% Similarity=0.282 Sum_probs=41.5
Q ss_pred cccccccccCCCCCeeecCC-CCCcccc-ccCCCC--CCCCCCCCCCCCccCCCC
Q 000496 49 AKDDSCQACGESENLMSCDT-CTYAYHA-KCLVPP--LKAPPSGSWRCPECVSPL 99 (1462)
Q Consensus 49 ~~~~~C~~C~~~g~ll~Cd~-C~~~~H~-~Cl~Pp--l~~~p~~~W~C~~C~~~~ 99 (1462)
.....|.+|+..+.+++|++ |+..||+ .||+-. -..++.+-|.|++|.-.-
T Consensus 426 fi~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rq 480 (1414)
T KOG1473|consen 426 FISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQ 480 (1414)
T ss_pred ceeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHh
Confidence 45667999999999999987 9999999 999732 245678889999997543
No 357
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=65.93 E-value=23 Score=43.37 Aligned_cols=46 Identities=22% Similarity=0.180 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHhh-c--cCCcEEEEecCCCchHHHHHHHHHHHHhCC
Q 000496 287 HPYQLEGLNFLRFSW-S--KQTHVILADEMGLGKTIQSIAFLASLFGER 332 (1462)
Q Consensus 287 rpyQlegvnwL~~~~-~--~~~~~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1462)
|.-|++-+.-..... . ...+++|.-..|+|||..+-.++..+....
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 566666654333222 2 335689999999999999988888876543
No 358
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=65.52 E-value=35 Score=44.23 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=27.6
Q ss_pred HHHHHHHhhccC---CcEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 293 GLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 293 gvnwL~~~~~~~---~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
.+..|...+..+ ...|+.-+.|+|||..|..++..+...
T Consensus 24 iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 24 IKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 334444444443 235789999999999999999988654
No 359
>PRK10865 protein disaggregation chaperone; Provisional
Probab=65.38 E-value=22 Score=48.29 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=27.8
Q ss_pred HHHHHHhh--ccCCcEEEEecCCCchHHHHHHHHHHHHh
Q 000496 294 LNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1462)
Q Consensus 294 vnwL~~~~--~~~~~~ILADemGLGKTiqaIa~l~~L~~ 330 (1462)
+..++..+ ....+.||.-+.|.|||..+-+++..+..
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 55555432 34668999999999999999888877654
No 360
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.24 E-value=21 Score=46.60 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhccC---CcEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 290 QlegvnwL~~~~~~~---~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
|...+..|...+..+ ...|+.-..|.|||..|..|...+...
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 455556666655553 236789999999999999999888653
No 361
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=64.94 E-value=30 Score=41.57 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHhhccCC---cEEEEecCCCchHHHHHHHHHHHHhCC
Q 000496 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1462)
.++|+|...-..+...+..++ ..++....|+||+..|..|+.++.-..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 478899888877877765554 457889999999999999999987653
No 362
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=64.42 E-value=19 Score=43.38 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHhhccCC---cEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
.++|||...-..|...+..++ .-++.-+.|+||+..|.+|+.++.-.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~ 51 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ 51 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 467888888877877766644 34689999999999999999999764
No 363
>PLN03212 Transcription repressor MYB5; Provisional
Probab=63.91 E-value=7 Score=44.45 Aligned_cols=51 Identities=25% Similarity=0.474 Sum_probs=34.4
Q ss_pred CCccCHHHHHHHHHHHHhhccchhHHhhhCcccChHHHHHHHhcCCCCCCCCCC
Q 000496 1081 GKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPVPG 1134 (1462)
Q Consensus 1081 ~~~w~~eeDr~LL~~i~k~Gyg~We~Ik~D~~l~l~~~i~~e~~~~~~~~~~~~ 1134 (1462)
...|+.|||-.|+..|.+||-++|..|-.--.. .+..+..+.|..+-+.|+
T Consensus 25 Rg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~---gRT~KQCReRW~N~L~P~ 75 (249)
T PLN03212 25 RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGL---LRCGKSCRLRWMNYLRPS 75 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhc---CCCcchHHHHHHHhhchh
Confidence 457999999999999999999999988431111 123344444555555553
No 364
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=63.83 E-value=18 Score=42.78 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=25.0
Q ss_pred cCCc-EEEEecCCCchHHHHHHHHHHHHhCC
Q 000496 303 KQTH-VILADEMGLGKTIQSIAFLASLFGER 332 (1462)
Q Consensus 303 ~~~~-~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1462)
+... .+|....|.|||..|.++...+....
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCC
Confidence 4455 78889999999999999999998653
No 365
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=63.74 E-value=57 Score=41.76 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=25.7
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhCCC-CcEEEEE
Q 000496 303 KQTHVILADEMGLGKTIQSIAFLASLFGERI-SPHLVVA 340 (1462)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~~~-~p~LIVv 340 (1462)
.++..+|.-..|.|||..+..++..+...+. ..+.+|.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 4555667788999999998777776654432 3455553
No 366
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=63.67 E-value=49 Score=38.80 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=30.7
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEc----chhHHHHHHH
Q 000496 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP----LSTLRNWERE 351 (1462)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP----~sll~qW~~E 351 (1462)
.+....+.-..|.|||..+..++..+...+ ..+.+|.- ...+.||...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~-~~v~~i~~D~~ri~~~~ql~~~ 125 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK-KTVGFITTDHSRIGTVQQLQDY 125 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHH
Confidence 345667888899999998777776665433 34555544 2456666543
No 367
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=63.36 E-value=2.4 Score=57.02 Aligned_cols=25 Identities=48% Similarity=1.136 Sum_probs=22.7
Q ss_pred HHhhhhccCCccccccccChhhHHH
Q 000496 131 KQYLVKWKGLSYLHCTWVPEKEFLK 155 (1462)
Q Consensus 131 ~eYlVKWkg~Sy~H~tWvpe~~L~~ 155 (1462)
.+|||||+|.+|-.|||+++..+..
T Consensus 300 ~eYLvKW~~LpY~e~TWE~~~~I~~ 324 (1373)
T KOG0384|consen 300 PEYLVKWRGLPYEECTWEDAEDIAK 324 (1373)
T ss_pred ceeEEEecCCCcccccccchhhhhh
Confidence 6999999999999999999987753
No 368
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=62.82 E-value=47 Score=44.70 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=31.2
Q ss_pred CCHHHHHHHHH-HHHhhcc-C-CcEE-EEecCCCchHHHHHHHHHHHHh
Q 000496 286 LHPYQLEGLNF-LRFSWSK-Q-THVI-LADEMGLGKTIQSIAFLASLFG 330 (1462)
Q Consensus 286 LrpyQlegvnw-L~~~~~~-~-~~~I-LADemGLGKTiqaIa~l~~L~~ 330 (1462)
=|+-|++.|.. |...... + .++| |.-.+|+|||.++-.++..|..
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47788887744 3333332 2 2344 8999999999999988877753
No 369
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=62.71 E-value=36 Score=42.87 Aligned_cols=42 Identities=19% Similarity=0.146 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhccCC---cEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 290 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
|-..+.+|...+..+. ..|+.-+.|+|||..|.+++..+...
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 4455666655555442 35789999999999999999988654
No 370
>PRK10865 protein disaggregation chaperone; Provisional
Probab=62.25 E-value=3.8e+02 Score=36.84 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=21.6
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 306 ~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
..+|.-++|+|||..|-++...++..
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~ 625 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDS 625 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcC
Confidence 36789999999999998888777643
No 371
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=61.88 E-value=9 Score=51.20 Aligned_cols=112 Identities=20% Similarity=0.234 Sum_probs=70.5
Q ss_pred hccCCcEEEEecCCCchHHHHHHHHH-HHHhCCCCcEEEEEcch-hH----HHHHHHHHHHCCCCeEEEEEcChhHHHHH
Q 000496 301 WSKQTHVILADEMGLGKTIQSIAFLA-SLFGERISPHLVVAPLS-TL----RNWEREFATWAPQMNVVMYVGTSQARNII 374 (1462)
Q Consensus 301 ~~~~~~~ILADemGLGKTiqaIa~l~-~L~~~~~~p~LIVvP~s-ll----~qW~~E~~k~~P~l~vvvy~G~~~~R~~i 374 (1462)
++...+.++.+.+|.|||+.+-..+. .+.....+.+.+|+|.. ++ ..|..-+. .|+++++-..|+...-
T Consensus 940 y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~--~~g~k~ie~tgd~~pd--- 1014 (1230)
T KOG0952|consen 940 YHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDE--LPGIKVIELTGDVTPD--- 1014 (1230)
T ss_pred eecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcc--cCCceeEeccCccCCC---
Confidence 34566788999999999998744444 44444445999999963 33 45655443 2466666665543211
Q ss_pred HHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCC----cceeEecccccccCCc
Q 000496 375 REYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI----KWQCMIVDEGHRLKNK 443 (1462)
Q Consensus 375 ~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i----~w~~VIVDEAHrlKN~ 443 (1462)
.......+++|||.+............ ....+|+||.|-++..
T Consensus 1015 --------------------------~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1015 --------------------------VKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred --------------------------hhheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 112245689999999875443322222 2456999999988654
No 372
>PRK07952 DNA replication protein DnaC; Validated
Probab=61.80 E-value=25 Score=40.53 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHh---hcc-CCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHHH
Q 000496 288 PYQLEGLNFLRFS---WSK-QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1462)
Q Consensus 288 pyQlegvnwL~~~---~~~-~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k 354 (1462)
+.|..++..+... +.. ..+.+|.-..|+|||..+.+++.++...+ .+++++ .+..|...+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g-~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG-KSVLII----TVADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC-CeEEEE----EHHHHHHHHHH
Confidence 3465566554322 222 24678999999999999999999987654 255555 34556665543
No 373
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=61.63 E-value=19 Score=38.91 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=37.7
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHHHH
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k~ 355 (1462)
.+|+-+.|+|||..++.++......+ .+++++.......+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g-~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG-EPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC-CcEEEEECCCCHHHHHHHHHHc
Confidence 47889999999999999988876543 4889998877777766666554
No 374
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=61.55 E-value=18 Score=36.30 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=25.4
Q ss_pred EEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHH
Q 000496 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (1462)
Q Consensus 308 ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~ 346 (1462)
+|.-+.|.|||..+-.++..+. .+++.+....+..
T Consensus 2 ll~G~~G~GKT~l~~~la~~l~----~~~~~i~~~~~~~ 36 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYLG----FPFIEIDGSELIS 36 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHTT----SEEEEEETTHHHT
T ss_pred EEECcCCCCeeHHHHHHHhhcc----ccccccccccccc
Confidence 6778899999998888777752 2566666665553
No 375
>PRK14873 primosome assembly protein PriA; Provisional
Probab=61.52 E-value=34 Score=45.12 Aligned_cols=94 Identities=18% Similarity=0.090 Sum_probs=72.8
Q ss_pred hchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHhc-C-CeEEEEecCCCHHHHHHHHHHHhccCCCCceEEee
Q 000496 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-K-WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS 683 (1462)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~~-g-i~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlS 683 (1462)
.|||..+...++......|+.+||...-+.....+...|..+ | ..+..+++..+..+|.+.......+. ..+++.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~---~~IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQ---ARVVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCC---CcEEEE
Confidence 689999999999999999999999999999888888888654 3 67999999999999998888775433 337888
Q ss_pred ccccccccCcccCCEEEEec
Q 000496 684 TRAGGLGINLATADTVIIYD 703 (1462)
Q Consensus 684 Tragg~GINL~~Ad~VIi~D 703 (1462)
||++- =.=+..-..||+.|
T Consensus 247 tRSAv-FaP~~~LgLIIvdE 265 (665)
T PRK14873 247 TRSAV-FAPVEDLGLVAIWD 265 (665)
T ss_pred cceeE-EeccCCCCEEEEEc
Confidence 88752 12233344555554
No 376
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=61.28 E-value=72 Score=35.49 Aligned_cols=144 Identities=16% Similarity=0.175 Sum_probs=73.4
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHH-HHHHHHH--CCCCeEEEEEcChhHHHHHHHhh
Q 000496 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW-EREFATW--APQMNVVMYVGTSQARNIIREYE 378 (1462)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW-~~E~~k~--~P~l~vvvy~G~~~~R~~i~~~e 378 (1462)
...+..++....|-|||..|+++.......+. +++||==. -..| ..|.... .|.+.+..+ |.. +.
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~-~V~ivQFl--Kg~~~~GE~~~l~~l~~v~~~~~-g~~--------~~ 87 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGK-KVGVVQFI--KGAWSTGERNLLEFGGGVEFHVM-GTG--------FT 87 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCC-eEEEEEEe--cCCCccCHHHHHhcCCCcEEEEC-CCC--------Cc
Confidence 35677889999999999999988877665542 66665221 1112 1222221 232222211 110 00
Q ss_pred hcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEecccccccCCc----chHHHHHHHhc
Q 000496 379 FYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNK----DSKLFSSLKQY 454 (1462)
Q Consensus 379 ~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEAHrlKN~----~Sk~~~~l~~l 454 (1462)
|.. ... .-+ .-.--+.+......+..-.|++||+||.-..-+. ...+...|..-
T Consensus 88 ~~~-~~~--------------------~e~-~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~r 145 (191)
T PRK05986 88 WET-QDR--------------------ERD-IAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNAR 145 (191)
T ss_pred ccC-CCc--------------------HHH-HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcC
Confidence 000 000 000 0000112222344555668999999998665442 23455555555
Q ss_pred cccceEeeccccccCCHHHHHHHHH
Q 000496 455 STRHRVLLTGTPLQNNLDELFMLMH 479 (1462)
Q Consensus 455 ~~~~rLLLTGTPlqNnl~EL~sLL~ 479 (1462)
+...-|+|||--....+.|+..++.
T Consensus 146 p~~~evVlTGR~~p~~Lie~ADlVT 170 (191)
T PRK05986 146 PGMQHVVITGRGAPRELIEAADLVT 170 (191)
T ss_pred CCCCEEEEECCCCCHHHHHhCchhe
Confidence 5566799999844444444444433
No 377
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=60.95 E-value=44 Score=36.49 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=22.8
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 305 THVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
...+|.-+.|.|||..+..++..+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 346789999999999999999888754
No 378
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=60.51 E-value=21 Score=47.31 Aligned_cols=66 Identities=20% Similarity=0.158 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC-CC--CcEEEEEcc-hhHHHHHHHHHHHC
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPL-STLRNWEREFATWA 356 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~-~~--~p~LIVvP~-sll~qW~~E~~k~~ 356 (1462)
.|.|-|.++|.+ ..+.+++....|+|||.+.+.-+.+|... +. ..+|+|+-+ .....-..-+....
T Consensus 2 ~Ln~~Q~~av~~------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 478899999863 35667777789999999999999998864 43 368999885 44444444555544
No 379
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=60.34 E-value=19 Score=45.77 Aligned_cols=29 Identities=31% Similarity=0.282 Sum_probs=23.7
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHh
Q 000496 302 SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1462)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~ 330 (1462)
...++.+|.-+.|.|||..+-+++..+..
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 34567899999999999998888877643
No 380
>PRK11823 DNA repair protein RadA; Provisional
Probab=60.19 E-value=37 Score=42.66 Aligned_cols=62 Identities=15% Similarity=0.094 Sum_probs=41.2
Q ss_pred HHHHHHH-hhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHHHH
Q 000496 293 GLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1462)
Q Consensus 293 gvnwL~~-~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k~ 355 (1462)
+++.+.. .+..+.-.+|.-++|.|||..++.++..+... ..++|.|.-.....+......++
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees~~qi~~ra~rl 130 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEESASQIKLRAERL 130 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccccHHHHHHHHHHc
Confidence 4444422 23445567889999999999999888877533 24788887766666655444443
No 381
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=59.98 E-value=50 Score=34.10 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=25.8
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~ 342 (1462)
.+|.-..|+|||..+..++..+... .++++++...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK-GGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECC
Confidence 4577789999999998888877553 3466666554
No 382
>PRK06835 DNA replication protein DnaC; Validated
Probab=59.91 E-value=20 Score=43.17 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHH---hh-ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEE
Q 000496 284 GSLHPYQLEGLNFLRF---SW-SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~---~~-~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIV 339 (1462)
+..+.++..++.++.. .+ ..+.+.+|.-++|+|||..+.+++..+...+. .++.+
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~-~V~y~ 217 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGK-SVIYR 217 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCC-eEEEE
Confidence 4566666666654432 22 24577889999999999999999998876642 44443
No 383
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=59.75 E-value=16 Score=41.28 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=24.3
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
+-.+.|++-..|.|||..+.+++..|+..
T Consensus 47 nmP~liisGpPG~GKTTsi~~LAr~LLG~ 75 (333)
T KOG0991|consen 47 NMPNLIISGPPGTGKTTSILCLARELLGD 75 (333)
T ss_pred CCCceEeeCCCCCchhhHHHHHHHHHhCh
Confidence 44578999999999999999988887653
No 384
>PRK13342 recombination factor protein RarA; Reviewed
Probab=59.73 E-value=37 Score=42.16 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=19.2
Q ss_pred CcEEEEecCCCchHHHHHHHHHHH
Q 000496 305 THVILADEMGLGKTIQSIAFLASL 328 (1462)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L 328 (1462)
.+.||.-+.|+|||..|-++...+
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999998877765543
No 385
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=59.72 E-value=18 Score=43.42 Aligned_cols=48 Identities=17% Similarity=0.301 Sum_probs=35.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHh
Q 000496 280 FLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1462)
Q Consensus 280 ~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~ 330 (1462)
++..+.+.+.|.+-+ ..+...+.+.|++-.||+|||...-+++..+..
T Consensus 123 lv~~g~~~~~~~~~L---~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 123 YVTSKIMTEAQASVI---RSAIDSRLNIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHcCCCCHHHHHHH---HHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 334466777776554 444567788999999999999888777776643
No 386
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=59.62 E-value=2.9e+02 Score=37.04 Aligned_cols=55 Identities=24% Similarity=0.313 Sum_probs=37.2
Q ss_pred CEEEEecCCCChhhHHHHHhhhhccCCC---CcEEEEEEecCCCHHHHH--HHHHHHHHHHHHHHh
Q 000496 697 DTVIIYDSDWNPHADLQAMARAHRLGQT---NKVMIFRLITRGSIEERM--MQMTKKKMVLEHLVV 757 (1462)
Q Consensus 697 d~VIi~D~dWNP~~d~QAigRahRiGQ~---k~V~VyrLvt~~TiEE~I--~e~~~kK~~L~~~Vi 757 (1462)
..||+|+++-++-. ++-+.+-. +...||.++..+|+||.= ..+.+.|+.+.+++-
T Consensus 546 ~yvi~y~~~~~~vR------qiEvYka~~p~~~lkVYfl~y~~S~EeQ~yltSirREk~sFe~LIr 605 (892)
T KOG0442|consen 546 RYVIMYESDLTFVR------QIEVYKATRPFRSLKVYFLYYGESTEEQRYLTSIRREKASFEKLIR 605 (892)
T ss_pred ceEEEEcCCCCcee------eeeeeeccCCCCCceEEEEEecCchHHHHHHHHHHHhHHHHHHHHh
Confidence 45899999865543 23333333 467799999999998843 456677777777664
No 387
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=59.40 E-value=51 Score=35.56 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=34.9
Q ss_pred hcccCCCcceeEecccccccCC----cchHHHHHHHhccccceEeeccccccCCHHHHH
Q 000496 421 SASLKPIKWQCMIVDEGHRLKN----KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELF 475 (1462)
Q Consensus 421 ~~~L~~i~w~~VIVDEAHrlKN----~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~ 475 (1462)
...+..-.+++||+||.=..-+ ....+...+..-....-++|||--.+..+.|+.
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 3445556799999999876533 223555666655556679999975444444433
No 388
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=59.12 E-value=54 Score=45.55 Aligned_cols=59 Identities=14% Similarity=-0.022 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHH
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~ 346 (1462)
..|.+-|.+++..+. ..++-++|.-.-|+|||.+.-++...+... ...++.++|...-.
T Consensus 380 ~~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~-G~~V~g~ApTgkAA 438 (1102)
T PRK13826 380 ARLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAWEAA-GYRVVGGALAGKAA 438 (1102)
T ss_pred CCCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEcCcHHHH
Confidence 579999999998652 345567889999999998766655544333 34788889975443
No 389
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=59.02 E-value=22 Score=31.63 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=35.7
Q ss_pred CCChHHHHHHHHHHHhcCCCCcc-hhhhchhhc-CC-CHHHHHHHHHHHHH
Q 000496 968 GFSQNQRAAFVQILMRFGVGDFD-WKEFTPRLK-QK-SYEEIREYGILFLT 1015 (1462)
Q Consensus 968 GF~~w~Rr~Fv~a~~KyG~~~~~-~~~ia~eL~-~K-s~eEvk~Ya~lF~~ 1015 (1462)
.+|+-+...|+.++..||.+++. -..|+.-+. .. |..+|+..+..+..
T Consensus 5 ~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 5 VWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 36777888999999999987641 156766664 34 99999988877654
No 390
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=58.83 E-value=50 Score=35.41 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=24.9
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEc
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP 341 (1462)
.++.-..|.|||..+..++..+...+....+|-++
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 46778999999999998888877664323334444
No 391
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=58.75 E-value=54 Score=41.78 Aligned_cols=59 Identities=22% Similarity=0.167 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHhhccCCc------EEEEecCCCchHHHHHHHHHHH--HhCCC-CcEEEEEcc
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTH------VILADEMGLGKTIQSIAFLASL--FGERI-SPHLVVAPL 342 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~------~ILADemGLGKTiqaIa~l~~L--~~~~~-~p~LIVvP~ 342 (1462)
..|.|||...+.-|.-.+.++.+ ++|...=|=|||..+.+++.+. +.... ..++|++|.
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s 127 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPS 127 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEecc
Confidence 57999999998766433333333 5788899999998766555543 33333 388999986
No 392
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=58.52 E-value=45 Score=43.86 Aligned_cols=97 Identities=18% Similarity=0.224 Sum_probs=68.0
Q ss_pred hchHHHHHHHHHHHHHHcCCeEEEEecchhhHHH----HHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEE
Q 000496 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDL----LEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1462)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldi----Led~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfL 681 (1462)
.|||..+..-.+-.....|.+++|.+.....+.- +..++...|+++..++|+++..+|..+++...++... ++
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~---Ii 342 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIH---LV 342 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCC---EE
Confidence 6788765443333344568899999988765554 4445555689999999999999999999888654443 56
Q ss_pred eeccc-cccccCcccCCEEEEecCC
Q 000496 682 LSTRA-GGLGINLATADTVIIYDSD 705 (1462)
Q Consensus 682 lSTra-gg~GINL~~Ad~VIi~D~d 705 (1462)
++|.+ .-..+.+.....||+=+-+
T Consensus 343 VgT~~ll~~~~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVIIDEQH 367 (630)
T ss_pred EecHHHHhccccccccceEEEechh
Confidence 66655 3456777778877776654
No 393
>PLN03091 hypothetical protein; Provisional
Probab=58.27 E-value=9.8 Score=46.53 Aligned_cols=51 Identities=29% Similarity=0.529 Sum_probs=34.8
Q ss_pred CCccCHHHHHHHHHHHHhhccchhHHhhhCcccChHHHHHHHhcCCCCCCCCCC
Q 000496 1081 GKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPVPG 1134 (1462)
Q Consensus 1081 ~~~w~~eeDr~LL~~i~k~Gyg~We~Ik~D~~l~l~~~i~~e~~~~~~~~~~~~ 1134 (1462)
...|+.|||..|+..|.+||-++|..|-.-... .+..+..+.|..+-+.|+
T Consensus 14 Kg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~---gRT~KQCRERW~NyLdP~ 64 (459)
T PLN03091 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGL---QRCGKSCRLRWINYLRPD 64 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhcc---CcCcchHhHHHHhccCCc
Confidence 457999999999999999999999998532111 123333444555555553
No 394
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=58.21 E-value=61 Score=39.96 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=34.0
Q ss_pred ceeEecccccccCCcchHHHHHHHhc-----cccceEeeccccccCCHHHHHHHHHhhcCCC
Q 000496 429 WQCMIVDEGHRLKNKDSKLFSSLKQY-----STRHRVLLTGTPLQNNLDELFMLMHFLDAGK 485 (1462)
Q Consensus 429 w~~VIVDEAHrlKN~~Sk~~~~l~~l-----~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~ 485 (1462)
.++|.||=+-|---.. .....|..+ .....|.||+|-=...+.+++..+..+...-
T Consensus 282 ~d~ILVDTaGrs~~D~-~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~ 342 (407)
T COG1419 282 CDVILVDTAGRSQYDK-EKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDG 342 (407)
T ss_pred CCEEEEeCCCCCccCH-HHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcce
Confidence 3788888554321111 122222222 2345689999998888899888887776543
No 395
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=58.19 E-value=31 Score=42.17 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=18.9
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHH
Q 000496 303 KQTHVILADEMGLGKTIQSIAFLAS 327 (1462)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~ 327 (1462)
.-.+.||.-..|.|||..|-.+..+
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999776554443
No 396
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=58.19 E-value=7.1 Score=43.65 Aligned_cols=39 Identities=26% Similarity=0.842 Sum_probs=30.5
Q ss_pred ccccccccCCCC--------CeeecCCCCCccccccCCCCCCCCCCCCCCCCccCC
Q 000496 50 KDDSCQACGESE--------NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1462)
Q Consensus 50 ~~~~C~~C~~~g--------~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 97 (1462)
..-+|.+|+..+ ....|..|...||..|... . .||.|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~----~-----~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK----K-----SCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC----C-----CCCCcHh
Confidence 466789998653 3789999999999999852 1 2999974
No 397
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=58.02 E-value=23 Score=41.10 Aligned_cols=49 Identities=14% Similarity=0.009 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEE
Q 000496 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1462)
Q Consensus 288 pyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVv 340 (1462)
|+...-+..+......+...+|..+.|+|||..|-++...+ ..|++.++
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l----g~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR----DRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh----CCCEEEEe
Confidence 44455555555666788899999999999999988776643 23777664
No 398
>CHL00095 clpC Clp protease ATP binding subunit
Probab=57.27 E-value=37 Score=46.10 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=23.5
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHh
Q 000496 303 KQTHVILADEMGLGKTIQSIAFLASLFG 330 (1462)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~ 330 (1462)
...+.||.-+.|.|||..+-+++..+..
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i~~ 226 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIVN 226 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4568899999999999998888777654
No 399
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=56.78 E-value=69 Score=36.21 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=24.9
Q ss_pred cceeEecccccccCCcch---HHHHHHHhc-cccceEeecc
Q 000496 428 KWQCMIVDEGHRLKNKDS---KLFSSLKQY-STRHRVLLTG 464 (1462)
Q Consensus 428 ~w~~VIVDEAHrlKN~~S---k~~~~l~~l-~~~~rLLLTG 464 (1462)
..++||||..|.+.+... .++..+..+ ....++++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 367899999999987642 344444444 2455777776
No 400
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=56.61 E-value=16 Score=39.93 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=35.3
Q ss_pred hcccCCCcceeEecccccccCCc----chHHHHHHHhccccceEeeccccccCCHHHHHH
Q 000496 421 SASLKPIKWQCMIVDEGHRLKNK----DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFM 476 (1462)
Q Consensus 421 ~~~L~~i~w~~VIVDEAHrlKN~----~Sk~~~~l~~l~~~~rLLLTGTPlqNnl~EL~s 476 (1462)
...+..-.|++||+||.-..-+. ...+...|..-+...-++|||.-....+.|+..
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 44455668999999998755432 234555665555666799999854444444333
No 401
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=56.43 E-value=39 Score=46.05 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=28.2
Q ss_pred HHHHHHHhhc--cCCcEEEEecCCCchHHHHHHHHHHHHh
Q 000496 293 GLNFLRFSWS--KQTHVILADEMGLGKTIQSIAFLASLFG 330 (1462)
Q Consensus 293 gvnwL~~~~~--~~~~~ILADemGLGKTiqaIa~l~~L~~ 330 (1462)
-+..++..+. ...+.||.-+.|.|||..+-+++..+..
T Consensus 181 ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 181 EIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3556655433 3568899999999999998888777654
No 402
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=56.12 E-value=7.3 Score=48.95 Aligned_cols=47 Identities=26% Similarity=0.481 Sum_probs=38.9
Q ss_pred cccccccccCCCCCeeecCCCCCccccccCCCCCCCCCCCCCCCCccCCC
Q 000496 49 AKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1462)
Q Consensus 49 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~~ 98 (1462)
-+.+.|.+|.++|.+++|+.|..++|-.|. ....|...|.|..|...
T Consensus 87 ~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~---~~~~~~c~~~~~d~~~~ 133 (463)
T KOG1081|consen 87 IEPSECFVCFKGGSLVTCKSRIQAPHRKCK---PAQLEKCSKRCTDCRAF 133 (463)
T ss_pred CCcchhccccCCCccceeccccccccccCc---CccCcccccCCcceeee
Confidence 356789999999999999999999999995 35567888888777643
No 403
>PRK10867 signal recognition particle protein; Provisional
Probab=55.82 E-value=51 Score=41.24 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=25.7
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEc
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP 341 (1462)
.++.-..|.|||.++.-++.++......++++|+-
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~ 137 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAA 137 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 56788999999999999988887662234444443
No 404
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=55.22 E-value=32 Score=45.77 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=19.8
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHH
Q 000496 304 QTHVILADEMGLGKTIQSIAFLASL 328 (1462)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L 328 (1462)
..+.||.-+.|+|||..|-++...+
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999998877666543
No 405
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=55.15 E-value=9.2 Score=43.85 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=38.9
Q ss_pred ccCHHHHHHHHHHHHhhccchhHHhhhCcccChHHHHHHHhcCCCCCCCCCC
Q 000496 1083 FWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPVPG 1134 (1462)
Q Consensus 1083 ~w~~eeDr~LL~~i~k~Gyg~We~Ik~D~~l~l~~~i~~e~~~~~~~~~~~~ 1134 (1462)
.|+.|||..|...|-+||-|+|-.|-.+-.|+ +.-+--++|..|-+-|.
T Consensus 11 pWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~---R~GKSCRlRW~NyLrP~ 59 (238)
T KOG0048|consen 11 PWTQEEDLTQIRSIKSFGKHNGTALPKLAGLR---RCGKSCRLRWTNYLRPD 59 (238)
T ss_pred CCChHHHHHHHHHHHHhCCCCcchhhhhcCCC---ccchHHHHHhhcccCCC
Confidence 79999999999999999999999998887653 33344456777776664
No 406
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=54.89 E-value=55 Score=40.73 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=18.6
Q ss_pred EEEEecCCCchHHHHHHHHHHH
Q 000496 307 VILADEMGLGKTIQSIAFLASL 328 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L 328 (1462)
.++.-..|.|||.++.-++..+
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5578899999999998888755
No 407
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=54.29 E-value=36 Score=44.36 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=65.4
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCC-----CCcEEEEEcc-hhHHHHHHHHHHHCC
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAPL-STLRNWEREFATWAP 357 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~-----~~p~LIVvP~-sll~qW~~E~~k~~P 357 (1462)
..|..-|+.+...+ ....-.|+.-..|+|||.+++-++..|.... +-|+||||=+ +.+.|...-+..+
T Consensus 377 ~ildsSq~~A~qs~----ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~~-- 450 (1025)
T KOG1807|consen 377 VILDSSQQFAKQSK----LTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYYH-- 450 (1025)
T ss_pred eeecHHHHHHHHHH----hhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHhc--
Confidence 34777899988665 3455679999999999999998888887653 2299999985 7888876655432
Q ss_pred CCeEEEEEcChhHHHHHHHhhhc
Q 000496 358 QMNVVMYVGTSQARNIIREYEFY 380 (1462)
Q Consensus 358 ~l~vvvy~G~~~~R~~i~~~e~~ 380 (1462)
+-..++..|+...-..++.+.++
T Consensus 451 qrpsImr~gsr~~spyLk~~n~~ 473 (1025)
T KOG1807|consen 451 QRPSIMRQGSRFFSPYLKVHNYL 473 (1025)
T ss_pred CCceEEEeccccCCHHHHHHHHH
Confidence 34556777777665666655443
No 408
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=54.08 E-value=48 Score=41.44 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=25.7
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHh-CCCCcEEEEEc
Q 000496 306 HVILADEMGLGKTIQSIAFLASLFG-ERISPHLVVAP 341 (1462)
Q Consensus 306 ~~ILADemGLGKTiqaIa~l~~L~~-~~~~p~LIVvP 341 (1462)
-.+++-..|.|||.++.-++.++.. .+....||-|-
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 3678999999999999999888763 33334444443
No 409
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.01 E-value=6.8 Score=46.91 Aligned_cols=44 Identities=27% Similarity=0.637 Sum_probs=35.0
Q ss_pred ccccccCC---CCCeeecCCCCCccccccCCCCCCCCCCCCCCCCccCCC
Q 000496 52 DSCQACGE---SENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1462)
Q Consensus 52 ~~C~~C~~---~g~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~~ 98 (1462)
+.|.+|-+ .|+.|+-=-|...||..|.+|-|... .=+||-|+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCc
Confidence 68999987 46766667889999999999987653 2269999973
No 410
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.39 E-value=87 Score=41.09 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.4
Q ss_pred EEEEecCCCchHHHHHHHHHHHHh
Q 000496 307 VILADEMGLGKTIQSIAFLASLFG 330 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~ 330 (1462)
.|+.-+.|.|||..|..+...+..
T Consensus 42 yLf~Gp~G~GKtt~A~~lAk~l~c 65 (614)
T PRK14971 42 YLFCGPRGVGKTTCARIFAKTINC 65 (614)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 578999999999988888887753
No 411
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=53.35 E-value=4.4 Score=45.99 Aligned_cols=48 Identities=31% Similarity=0.656 Sum_probs=34.7
Q ss_pred ccccccccCCC----------CCeeecCCCCCccccccCCCCC---CCCCCCCCCCCccCC
Q 000496 50 KDDSCQACGES----------ENLMSCDTCTYAYHAKCLVPPL---KAPPSGSWRCPECVS 97 (1462)
Q Consensus 50 ~~~~C~~C~~~----------g~ll~Cd~C~~~~H~~Cl~Ppl---~~~p~~~W~C~~C~~ 97 (1462)
...+|--|-.+ .+|+.|..|.|+=|..||.-.. ..+-.-.|.|-+|..
T Consensus 223 Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~ 283 (336)
T KOG1244|consen 223 PNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY 283 (336)
T ss_pred CCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecce
Confidence 45567777543 3499999999999999994321 123456899999984
No 412
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=53.27 E-value=19 Score=36.09 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhhccchhhhhhhccCCchhhhHHhhhhhHHHHHHHhhhh
Q 000496 1285 AQHYNEMCKVLEENVHEVVKTSLTSQPASAQLRTNLQLLETLCEDVNQI 1333 (1462)
Q Consensus 1285 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1333 (1462)
--.|++|.-+|+.=..|+.|.=-||+.|+.+.|+....||-|..|++..
T Consensus 3 Kdt~~kmkeL~e~~~~D~~K~EKGNKAAGtRaRK~sleLeKLaKefRKe 51 (123)
T PF07432_consen 3 KDTFKKMKELLESFEADAEKAEKGNKAAGTRARKASLELEKLAKEFRKE 51 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999899999999999999999999999999999999873
No 413
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=53.17 E-value=24 Score=45.52 Aligned_cols=45 Identities=16% Similarity=0.038 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHH
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL 328 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L 328 (1462)
.++++.|++-.+-|+..+..|+=||+-..||+|||+..|.....+
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltW 58 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTW 58 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHH
Confidence 678899999988899999999999999999999999866554433
No 414
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=52.87 E-value=71 Score=38.41 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=21.8
Q ss_pred cEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 306 ~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
..+|.-+.|+|||..+-.++..+...
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 35789999999999999888887643
No 415
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=52.72 E-value=39 Score=45.16 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC-CC--CcEEEEEcc-hhHHHHHHHHHHHCC
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPL-STLRNWEREFATWAP 357 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~-~~--~p~LIVvP~-sll~qW~~E~~k~~P 357 (1462)
.|-|-|.++|. ...+.+++....|+|||.+.+.-+.+|... +. ..+|+|+-+ .....-..-+.+..+
T Consensus 4 ~Ln~~Q~~av~------~~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 4 GLNDKQREAVA------APPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred ccCHHHHHHHc------CCCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 48899999986 345678888899999999999999999864 33 378888885 444455555555543
No 416
>PRK05973 replicative DNA helicase; Provisional
Probab=52.52 E-value=34 Score=39.27 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=38.7
Q ss_pred HhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHHH
Q 000496 299 FSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1462)
Q Consensus 299 ~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k 354 (1462)
-.+..+.-.+|+-..|+|||+-++.|+...... ..+++++.--..-.+-.+.+..
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes~~~i~~R~~s 113 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYTEQDVRDRLRA 113 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCCHHHHHHHHHH
Confidence 344667778999999999999999998877654 2478888765444444444433
No 417
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=51.57 E-value=21 Score=43.84 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=22.9
Q ss_pred hccCCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 301 ~~~~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
...|.+++|...-|.|||..+-.+...+...
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 3567778888899999998776666555444
No 418
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=51.26 E-value=50 Score=39.57 Aligned_cols=124 Identities=24% Similarity=0.349 Sum_probs=0.0
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCch
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPK 386 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~ 386 (1462)
.++.---|.||| ++|+=|++++.....++|+.+--.--.--..+++-|.-.+.+-++.+.
T Consensus 142 il~vGVNG~GKT-TTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~------------------- 201 (340)
T COG0552 142 ILFVGVNGVGKT-TTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGK------------------- 201 (340)
T ss_pred EEEEecCCCchH-hHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccC-------------------
Q ss_pred hhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEecccccccCCcch------HHHHHHHhc--cccc
Q 000496 387 KVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDS------KLFSSLKQY--STRH 458 (1462)
Q Consensus 387 ~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEAHrlKN~~S------k~~~~l~~l--~~~~ 458 (1462)
..-|---.-|+.+...... .+++||+|=|-|+-|... ++.+.+... .+.|
T Consensus 202 ------------------~G~DpAaVafDAi~~Akar----~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~ 259 (340)
T COG0552 202 ------------------EGADPAAVAFDAIQAAKAR----GIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPH 259 (340)
T ss_pred ------------------CCCCcHHHHHHHHHHHHHc----CCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCc
Q ss_pred eEeec--cccccCCHH
Q 000496 459 RVLLT--GTPLQNNLD 472 (1462)
Q Consensus 459 rLLLT--GTPlqNnl~ 472 (1462)
.++|. ||-=||.+.
T Consensus 260 e~llvlDAttGqnal~ 275 (340)
T COG0552 260 EILLVLDATTGQNALS 275 (340)
T ss_pred eEEEEEEcccChhHHH
No 419
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=51.13 E-value=77 Score=38.18 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHhhccCCc-EEEEecCCCchHHHHHHHHHHHHhC
Q 000496 286 LHPYQLEGLNFLRFSWSKQTH-VILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~-~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
++|+|...-.-+...+..-.+ .++.-..|+|||..|..+...+.-.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 467887776556555444444 4589999999999999999988753
No 420
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=51.05 E-value=4.2e+02 Score=32.72 Aligned_cols=141 Identities=16% Similarity=0.113 Sum_probs=76.7
Q ss_pred CCCHHHHHHHHHHHHhhcc--CCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchh---HHHHHHHHHHHCCCC
Q 000496 285 SLHPYQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST---LRNWEREFATWAPQM 359 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~--~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sl---l~qW~~E~~k~~P~l 359 (1462)
-.|.+|+..+.-|+..-.. ....+|.-..|+|||..+-.++..+ .-++..|.+... -.-|..-+.+-.
T Consensus 9 ~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~----n~~~vw~n~~ecft~~~lle~IL~~~~--- 81 (438)
T KOG2543|consen 9 PCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL----NLENVWLNCVECFTYAILLEKILNKSQ--- 81 (438)
T ss_pred cchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc----CCcceeeehHHhccHHHHHHHHHHHhc---
Confidence 4788999988766433222 1223789999999999888777765 226666666532 233444443321
Q ss_pred eEEEEEcChhHH--HHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEecccc
Q 000496 360 NVVMYVGTSQAR--NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEG 437 (1462)
Q Consensus 360 ~vvvy~G~~~~R--~~i~~~e~~~~~~~~~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEA 437 (1462)
..-+.|....- ..+ ..|.-++..|+...+. -.--++|+|-|
T Consensus 82 -~~d~dg~~~~~~~en~------------------------------~d~i~~l~q~~~~t~~------d~~~~liLDna 124 (438)
T KOG2543|consen 82 -LADKDGDKVEGDAENF------------------------------SDFIYLLVQWPAATNR------DQKVFLILDNA 124 (438)
T ss_pred -cCCCchhhhhhHHHHH------------------------------HHHHHHHHhhHHhhcc------CceEEEEEcCH
Confidence 00111111100 000 0111111122222111 12237999999
Q ss_pred cccCCcchHHHHHHHhcc-----ccceEeeccccccC
Q 000496 438 HRLKNKDSKLFSSLKQYS-----TRHRVLLTGTPLQN 469 (1462)
Q Consensus 438 HrlKN~~Sk~~~~l~~l~-----~~~rLLLTGTPlqN 469 (1462)
..++...+.+.+.+..+. ..-+++++.++..+
T Consensus 125 d~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 125 DALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred HhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 999988888887776653 34567788776443
No 421
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=51.04 E-value=1.2e+02 Score=37.85 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=24.9
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEc
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP 341 (1462)
..|+--.|.|||.++.-++.++...+. ++++|+-
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G~-kV~lV~~ 136 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKGF-KPCLVCA 136 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEcC
Confidence 457788999999999888887765543 4555543
No 422
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=50.84 E-value=61 Score=42.86 Aligned_cols=65 Identities=20% Similarity=0.132 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC-CCC--cEEEEEc-chhHHHHHHHHHHHC
Q 000496 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RIS--PHLVVAP-LSTLRNWEREFATWA 356 (1462)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~-~~~--p~LIVvP-~sll~qW~~E~~k~~ 356 (1462)
|.|-|..+++ ...+.+++-...|+|||.+.+.-+.++... +.. .+|+|+. .....+-.+.+.+..
T Consensus 2 Ln~~Q~~av~------~~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVE------YVTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHh------CCCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 7789999886 345677888899999999999999998864 333 5777766 455666666676654
No 423
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=50.63 E-value=1.7 Score=40.17 Aligned_cols=47 Identities=26% Similarity=0.496 Sum_probs=18.6
Q ss_pred ccccccCCC----CC--eeecC--CCCCccccccCCCCCCCCC-------CCCCCCCccCCC
Q 000496 52 DSCQACGES----EN--LMSCD--TCTYAYHAKCLVPPLKAPP-------SGSWRCPECVSP 98 (1462)
Q Consensus 52 ~~C~~C~~~----g~--ll~Cd--~C~~~~H~~Cl~Ppl~~~p-------~~~W~C~~C~~~ 98 (1462)
..|.+|... +. .+.|+ .|...||..||---+...+ .-.+.||.|..+
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 358888652 22 57898 8999999999954432211 123569999753
No 424
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=50.14 E-value=39 Score=41.81 Aligned_cols=106 Identities=21% Similarity=0.223 Sum_probs=0.0
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCch
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPK 386 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k~~P~l~vvvy~G~~~~R~~i~~~e~~~~~~~~ 386 (1462)
.+++-=.|+|||.++.=+..++.. ....+|+|+--.--+--..+++..+-...|-+|......
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~---------------- 165 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEK---------------- 165 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCC----------------
Q ss_pred hhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceeEecccccccCCcchHHHHHHHhcc
Q 000496 387 KVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYS 455 (1462)
Q Consensus 387 ~~~k~~~~~~~~~~~~~~~kfdVvItSYe~l~~d~~~L~~i~w~~VIVDEAHrlKN~~Sk~~~~l~~l~ 455 (1462)
..-+++..-...++.-.+++||||=|-|+.- +..+...+..++
T Consensus 166 -------------------------~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~i-de~Lm~El~~Ik 208 (451)
T COG0541 166 -------------------------DPVEIAKAALEKAKEEGYDVVIVDTAGRLHI-DEELMDELKEIK 208 (451)
T ss_pred -------------------------CHHHHHHHHHHHHHHcCCCEEEEeCCCcccc-cHHHHHHHHHHH
No 425
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=49.69 E-value=7.3 Score=34.70 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=21.1
Q ss_pred cchhhhhhhccCCCCceEEEEEeccc
Q 000496 192 TTVDRILACRGEDDEKEYLVKYKELS 217 (1462)
Q Consensus 192 ~~veRII~~r~~~~~~eyLVKWk~L~ 217 (1462)
+.+|+||+.-...|+..|||||++.+
T Consensus 3 l~~E~Ivg~~d~~G~l~~likwk~~~ 28 (58)
T PF01393_consen 3 LEWEKIVGATDTNGELMFLIKWKNSG 28 (58)
T ss_dssp -TEEEEEEEEECTSSEEEEEEETTSS
T ss_pred CChHHHheeecCCCcEEEEEEECCCC
Confidence 45788888777778999999999976
No 426
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=49.45 E-value=49 Score=44.25 Aligned_cols=66 Identities=18% Similarity=0.145 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC-CCC--cEEEEEcc-hhHHHHHHHHHHHC
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RIS--PHLVVAPL-STLRNWEREFATWA 356 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~-~~~--p~LIVvP~-sll~qW~~E~~k~~ 356 (1462)
.|-|-|.++|. ...+..++-...|+|||.+.+.-+.+|... +.. .+|+|+-+ .....-..-+.+..
T Consensus 9 ~Ln~~Q~~av~------~~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVA------APLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHh------CCCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 48899999986 335677777789999999999999999863 433 68888885 44444444455544
No 427
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=49.38 E-value=82 Score=37.75 Aligned_cols=43 Identities=16% Similarity=0.402 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhccCC---cEEEEecCCCchHHHHHHHHHHHHhCC
Q 000496 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1462)
Q Consensus 290 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1462)
|-+++..|...+..++ .-++.-+.|.||+..|.+|+..+....
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 5556666666666653 467899999999999999999987653
No 428
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=49.00 E-value=59 Score=38.27 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=27.3
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhC-CCCcEEEEEc
Q 000496 304 QTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP 341 (1462)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~-~~~p~LIVvP 341 (1462)
+...+|.-.+|.|||.++..++.++... +..++.||.-
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 4456678899999999999888887654 3345555543
No 429
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=48.89 E-value=27 Score=40.48 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=28.9
Q ss_pred HHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 295 NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 295 nwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
.+|......+++.+++-++|+|||.+.-+++.++-..
T Consensus 118 ~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 118 EFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp HHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred HHHhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 4555555678899999999999999988887766544
No 430
>CHL00206 ycf2 Ycf2; Provisional
Probab=48.76 E-value=51 Score=47.74 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=32.2
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHH
Q 000496 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1462)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW 348 (1462)
...+|++|.-.+|+|||..|=|++... .-|++-|.....+..|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es----~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS----YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc----CCceEEEEHHHHhhcc
Confidence 346678899999999999877666642 2388887777777665
No 431
>PRK09183 transposase/IS protein; Provisional
Probab=48.49 E-value=54 Score=38.14 Aligned_cols=51 Identities=22% Similarity=0.295 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhH
Q 000496 290 QLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1462)
Q Consensus 290 QlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll 345 (1462)
++.++.|+ ..+.+.+|.-+.|+|||..+.++...+...+ ..++.+....++
T Consensus 92 ~L~~~~~i----~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G-~~v~~~~~~~l~ 142 (259)
T PRK09183 92 SLRSLSFI----ERNENIVLLGPSGVGKTHLAIALGYEAVRAG-IKVRFTTAADLL 142 (259)
T ss_pred HHhcCCch----hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEeHHHHH
Confidence 44444554 6788899999999999999988876655443 255555434444
No 432
>PRK06921 hypothetical protein; Provisional
Probab=48.38 E-value=72 Score=37.29 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=30.8
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhH
Q 000496 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1462)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll 345 (1462)
.+.+.+|.-++|+|||..+.+++..+.......++.+....++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~ 158 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGF 158 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHH
Confidence 3667889999999999999999998876522345554443333
No 433
>PF12846 AAA_10: AAA-like domain
Probab=48.34 E-value=47 Score=38.48 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=32.7
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHH
Q 000496 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWER 350 (1462)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~ 350 (1462)
+.++++.-.+|+|||..+..++..+...+ .+++|+=|+.-...|.+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g-~~~~i~D~~g~~~~~~~ 46 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG-PRVVIFDPKGDYSPLAR 46 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC-CCEEEEcCCchHHHHHH
Confidence 35788899999999998887777776654 36677766644444433
No 434
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=48.28 E-value=29 Score=39.10 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=40.1
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHHHHC
Q 000496 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (1462)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k~~ 356 (1462)
-.+.-.+|+-+.|+|||+-++.|+..-......+++.|.-.....+..+.+..+.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFG 71 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTT
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcC
Confidence 3456678999999999999999987665541237888887777777777777654
No 435
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=47.71 E-value=39 Score=40.16 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHh
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~ 330 (1462)
+.+-+.|. .+|......+++.+++-.||+|||..+-+++..+..
T Consensus 115 g~~~~~~~---~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 115 GIMTAAQR---DVLREAVLARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCCCHHHH---HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 34444444 345555567889999999999999988777776654
No 436
>PRK12377 putative replication protein; Provisional
Probab=47.35 E-value=1e+02 Score=35.76 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=31.8
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHH
Q 000496 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1462)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW 348 (1462)
..+.+|.-..|+|||..+.+++..+...+. .++++.-..++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~-~v~~i~~~~l~~~l 144 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGR-SVIVVTVPDVMSRL 144 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CeEEEEHHHHHHHH
Confidence 356788999999999999999999886543 45555444555433
No 437
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=47.33 E-value=38 Score=45.43 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=23.3
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
...+.||.-+.|+|||..+-++...+...
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~ 234 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46788999999999999987777665443
No 438
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=46.75 E-value=77 Score=39.23 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=22.9
Q ss_pred hccCCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 301 ~~~~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
...|..+.|..+.|.|||..+-.+...+...
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 3577888899999999998766655555433
No 439
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=46.70 E-value=83 Score=39.98 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=22.4
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhC-CCCcEEEE
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGE-RISPHLVV 339 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~-~~~p~LIV 339 (1462)
..|.-..|.|||.++.-++..+... +...+.+|
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI 292 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCVMRHGASKVALL 292 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 4577899999999888777766433 33344443
No 440
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=46.67 E-value=10 Score=37.97 Aligned_cols=30 Identities=30% Similarity=0.785 Sum_probs=25.5
Q ss_pred ccccccccCCC-CCeeecCC--CCCccccccCC
Q 000496 50 KDDSCQACGES-ENLMSCDT--CTYAYHAKCLV 79 (1462)
Q Consensus 50 ~~~~C~~C~~~-g~ll~Cd~--C~~~~H~~Cl~ 79 (1462)
....|.+|+.. |-.+.|.. |...||..|..
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHHH
Confidence 35679999984 77999987 99999999973
No 441
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=46.29 E-value=70 Score=37.03 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=19.0
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHH
Q 000496 302 SKQTHVILADEMGLGKTIQSIAFLAS 327 (1462)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~ 327 (1462)
..|..++|.-+.|.|||..+-.++..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~ 39 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANA 39 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 57888888889999999654443333
No 442
>PF14061 Mtf2_C: Polycomb-like MTF2 factor 2
Probab=45.94 E-value=11 Score=32.19 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=17.9
Q ss_pred hhhhhc-cCCCCceEEEEEeccc
Q 000496 196 RILACR-GEDDEKEYLVKYKELS 217 (1462)
Q Consensus 196 RII~~r-~~~~~~eyLVKWk~L~ 217 (1462)
+|++.| ..++..+|||-|.|.+
T Consensus 27 ~VlArRV~~dG~vQYLvEWeg~~ 49 (50)
T PF14061_consen 27 RVLARRVTPDGKVQYLVEWEGAT 49 (50)
T ss_pred EEEEEEEcCCCcEEEEEEecCcC
Confidence 778877 5678899999998864
No 443
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=45.79 E-value=1.2e+02 Score=38.55 Aligned_cols=54 Identities=22% Similarity=0.233 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhccC------CcEEEEecCCCchHHHHHHHHHHHH-hCC-CC-cEEEEEcc
Q 000496 288 PYQLEGLNFLRFSWSKQ------THVILADEMGLGKTIQSIAFLASLF-GER-IS-PHLVVAPL 342 (1462)
Q Consensus 288 pyQlegvnwL~~~~~~~------~~~ILADemGLGKTiqaIa~l~~L~-~~~-~~-p~LIVvP~ 342 (1462)
|+|...+..+ +.|... +.++|.-.=|-|||..+.++..++. -.+ .+ -++++++.
T Consensus 1 PwQ~fi~~~i-~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~ 63 (477)
T PF03354_consen 1 PWQKFILRSI-FGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANT 63 (477)
T ss_pred CcHHHHHHHH-hceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCC
Confidence 6787766544 333322 2367788889999988776655543 232 23 46666664
No 444
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=45.12 E-value=11 Score=36.26 Aligned_cols=31 Identities=19% Similarity=0.685 Sum_probs=26.3
Q ss_pred cccccccccCCC-CCeeecC--CCCCccccccCC
Q 000496 49 AKDDSCQACGES-ENLMSCD--TCTYAYHAKCLV 79 (1462)
Q Consensus 49 ~~~~~C~~C~~~-g~ll~Cd--~C~~~~H~~Cl~ 79 (1462)
.....|..|+.. |-.+.|. .|.+.||+.|..
T Consensus 34 ~~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 34 RRKLKCSICKKKGGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred HhCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHc
Confidence 345689999998 8899997 599999999974
No 445
>PRK10263 DNA translocase FtsK; Provisional
Probab=44.72 E-value=54 Score=45.80 Aligned_cols=41 Identities=22% Similarity=0.406 Sum_probs=30.2
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhC-CCC--cEEEEEcch
Q 000496 303 KQTHVILADEMGLGKTIQSIAFLASLFGE-RIS--PHLVVAPLS 343 (1462)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~-~~~--p~LIVvP~s 343 (1462)
+..+.+++-.+|+|||...-++|..+... ... .+++|=|+.
T Consensus 1009 k~PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK~ 1052 (1355)
T PRK10263 1009 KMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKM 1052 (1355)
T ss_pred cCCcEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCCc
Confidence 45788999999999999988888776543 222 566677763
No 446
>PRK08939 primosomal protein DnaI; Reviewed
Probab=44.72 E-value=34 Score=40.81 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=30.3
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhH
Q 000496 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1462)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll 345 (1462)
.+.|.+|.-.+|+|||..+.+++..+...+. +++++.-..++
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~-~v~~~~~~~l~ 196 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGV-SSTLLHFPEFI 196 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CEEEEEHHHHH
Confidence 3557788999999999999999999886543 44444333333
No 447
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=44.60 E-value=1.8e+02 Score=34.89 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=24.1
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEE
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVv 340 (1462)
..|.-..|.|||.++..++..+...+ +.++|+.
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~~~g-~~V~Li~ 149 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYKAQG-KKVLLAA 149 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC-CeEEEEe
Confidence 44667999999999888888776543 3555554
No 448
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=44.56 E-value=1.1e+02 Score=44.22 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHH---hCCCCcEEEEEcchhHH
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF---GERISPHLVVAPLSTLR 346 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~---~~~~~p~LIVvP~sll~ 346 (1462)
.|.+-|.+++..+.. ...+-++|.--.|+|||.+.-+++..+. ......++.++|..-..
T Consensus 835 ~Lt~~Qr~Av~~iLt--s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa 897 (1623)
T PRK14712 835 KLTSGQRAATRMILE--TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAV 897 (1623)
T ss_pred ccCHHHHHHHHHHHh--CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHH
Confidence 689999999976532 3456788999999999988655544432 22223678889975443
No 449
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=44.39 E-value=1e+02 Score=42.37 Aligned_cols=96 Identities=11% Similarity=0.083 Sum_probs=66.5
Q ss_pred hchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHH----HhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEE
Q 000496 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL----TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1462)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L----~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfL 681 (1462)
.|||..+....+-.....|.+++|.+..+..+.-....+ ...++++..++|.++..++..++..+..+... ++
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~d---IV 558 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKID---IL 558 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCce---EE
Confidence 578876554443334456889999999987766655544 33477888999999999999999988764333 55
Q ss_pred eeccc-cccccCcccCCEEEEecC
Q 000496 682 LSTRA-GGLGINLATADTVIIYDS 704 (1462)
Q Consensus 682 lSTra-gg~GINL~~Ad~VIi~D~ 704 (1462)
++|.. ....+.+.....||+=+-
T Consensus 559 IGTp~ll~~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 559 IGTHKLLQKDVKFKDLGLLIIDEE 582 (926)
T ss_pred EchHHHhhCCCCcccCCEEEeecc
Confidence 55553 445567777777777553
No 450
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=43.22 E-value=1.4e+02 Score=37.30 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=30.3
Q ss_pred cceeEecccccccCCcchHHHHHHHhcc-----ccceEeeccccccCCHHHHHHHHHhhc
Q 000496 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYS-----TRHRVLLTGTPLQNNLDELFMLMHFLD 482 (1462)
Q Consensus 428 ~w~~VIVDEAHrlKN~~Sk~~~~l~~l~-----~~~rLLLTGTPlqNnl~EL~sLL~fL~ 482 (1462)
.+++++||.+=+..+ ...+...+..+. ....|.|++|--.+.+.++...+..+.
T Consensus 269 ~~d~VLIDTaGrsqr-d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~ 327 (420)
T PRK14721 269 GKHMVLIDTVGMSQR-DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHG 327 (420)
T ss_pred CCCEEEecCCCCCcc-hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCC
Confidence 356788887644332 223344444442 234577999976666666665554443
No 451
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=43.10 E-value=45 Score=38.89 Aligned_cols=43 Identities=26% Similarity=0.251 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHh
Q 000496 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1462)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~ 330 (1462)
+.+.|++.+.++.. ..++..+++-++|+|||...-+++.++..
T Consensus 64 ~~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 64 LKPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 67788888766532 33455789999999999988888877643
No 452
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=43.00 E-value=34 Score=41.59 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=28.8
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 000496 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (1462)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sl 344 (1462)
.|+..+|+.+.|+|||..|+++...|-.. -||..++-..+
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~--~PF~~isgSEi 88 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGED--VPFVSISGSEI 88 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTT--S-EEEEEGGGG
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCC--CCeeEccccee
Confidence 46677899999999999999998887432 28888876543
No 453
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=42.75 E-value=52 Score=41.48 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=38.5
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHHH
Q 000496 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1462)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k 354 (1462)
..+.-.+|+-++|.|||..++.++..+...+ +++|.|.......|......+
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g-~kvlYvs~EEs~~qi~~ra~r 143 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQ-MKVLYVSGEESLQQIKMRAIR 143 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcC-CcEEEEECcCCHHHHHHHHHH
Confidence 4455578999999999999998888776543 478888877666666544444
No 454
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=42.64 E-value=13 Score=43.57 Aligned_cols=52 Identities=21% Similarity=0.549 Sum_probs=31.7
Q ss_pred hccccccccccccCCC--C---CeeecCCCCCcc--------ccccCCCCCCCCCC-CCCCCCccC
Q 000496 45 VRIDAKDDSCQACGES--E---NLMSCDTCTYAY--------HAKCLVPPLKAPPS-GSWRCPECV 96 (1462)
Q Consensus 45 ~~~~~~~~~C~~C~~~--g---~ll~Cd~C~~~~--------H~~Cl~Ppl~~~p~-~~W~C~~C~ 96 (1462)
..++..+..|.+||+. | -|+.|..|.-.| |+.|....-..+.. ..=.||.|+
T Consensus 9 sydedl~ElCPVCGDkVSGYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CR 74 (475)
T KOG4218|consen 9 SYDEDLGELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCR 74 (475)
T ss_pred cCccccccccccccCccccceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchh
Confidence 3445567789999974 2 299999998665 56665433333321 123566665
No 455
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=42.63 E-value=37 Score=42.10 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=36.7
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHHH
Q 000496 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1462)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k 354 (1462)
.++.+|+-+.|.|||..+.+++.... ..|.=|.|.++...|..|-++
T Consensus 186 ~rglLLfGPpgtGKtmL~~aiAsE~~----atff~iSassLtsK~~Ge~eK 232 (428)
T KOG0740|consen 186 VRGLLLFGPPGTGKTMLAKAIATESG----ATFFNISASSLTSKYVGESEK 232 (428)
T ss_pred cchhheecCCCCchHHHHHHHHhhhc----ceEeeccHHHhhhhccChHHH
Confidence 34668899999999998888777542 367788899999998777654
No 456
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=42.44 E-value=62 Score=36.93 Aligned_cols=52 Identities=27% Similarity=0.250 Sum_probs=37.4
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHHH
Q 000496 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1462)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k 354 (1462)
..+...+++-+.|+|||+.++.|+...... ..++|+|.-.....+-.+.+..
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEEHPVQVRRNMAQ 70 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeCCHHHHHHHHHH
Confidence 456667889999999999999988876543 2488888766555555554544
No 457
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.39 E-value=58 Score=39.68 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=28.1
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~ 342 (1462)
.++.-=.|.|||.+..-+++|+.+++.++.||.+.+
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDT 139 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADT 139 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecc
Confidence 345677899999998888888888877777776664
No 458
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=42.28 E-value=2.8 Score=34.70 Aligned_cols=40 Identities=30% Similarity=0.686 Sum_probs=26.2
Q ss_pred ccccccCCC---CC-eeecCCCCCccccccCCCCCCCCCCCCCCCCccC
Q 000496 52 DSCQACGES---EN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECV 96 (1462)
Q Consensus 52 ~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~ 96 (1462)
+.|.+|... ++ ++... |...||..|+..-+... -.||.|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC----CcCCccC
Confidence 358888763 33 44444 99999999997655442 3788884
No 459
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=42.25 E-value=84 Score=35.07 Aligned_cols=35 Identities=20% Similarity=0.029 Sum_probs=23.6
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~ 342 (1462)
-++.-.|++|||..-|-.+..... ...+++|..|.
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~-~g~~v~vfkp~ 41 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKE-AGMKVLVFKPA 41 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHH-cCCeEEEEecc
Confidence 456789999999865544444332 23488888885
No 460
>PRK13766 Hef nuclease; Provisional
Probab=41.85 E-value=3.9e+02 Score=36.12 Aligned_cols=119 Identities=13% Similarity=0.162 Sum_probs=67.1
Q ss_pred hCCcccccCCCCCcccchHHHHHH---------hhhchHHHHHHHHHHH-HHHcCCeEEEEecchhhHHHHHHHHH----
Q 000496 580 CCHPYMLEGVEPDIEDTNESFKQL---------LESSGKLQLLDKMMVK-LKEQGHRVLIYSQFQHMLDLLEDYLT---- 645 (1462)
Q Consensus 580 c~hP~L~~~~e~~~~~~~~~~~~l---------i~~SgKl~~L~klL~~-l~~~g~KVLIFSq~~~~ldiLed~L~---- 645 (1462)
..||++.+..........+..... -..+||.....-++.. +...+.++||.+.......-....+.
T Consensus 4 ~~~~~~~~~~~~~r~yQ~~~~~~~l~~n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 4 IEHPLIKPNTIEARLYQQLLAATALKKNTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred ccCCccCcCcCCccHHHHHHHHHHhcCCeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 367877664433322222222222 1257888644333332 34567899999998766644444443
Q ss_pred hcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeecccc-----ccccCcccCCEEEEecCC
Q 000496 646 FKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG-----GLGINLATADTVIIYDSD 705 (1462)
Q Consensus 646 ~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTrag-----g~GINL~~Ad~VIi~D~d 705 (1462)
..+.++..++|.++..+|..+... .. +++++.+.. ..-+++...+.||+-+-+
T Consensus 84 ~~~~~v~~~~g~~~~~~r~~~~~~-----~~--iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 84 IPEEKIVVFTGEVSPEKRAELWEK-----AK--VIVATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred CCCceEEEEeCCCCHHHHHHHHhC-----CC--EEEECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 233478889999998888655432 12 344444432 223456667777776654
No 461
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=41.69 E-value=51 Score=39.60 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHH
Q 000496 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF 329 (1462)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~ 329 (1462)
.+.+.+.|.+.+ ......+.+.+++-.+|+|||...-+++..+.
T Consensus 130 ~g~~~~~~~~~L---~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~ 173 (319)
T PRK13894 130 RGIMTAAQREAI---IAAVRAHRNILVIGGTGSGKTTLVNAIINEMV 173 (319)
T ss_pred cCCCCHHHHHHH---HHHHHcCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 355666666544 44456788999999999999977767766653
No 462
>smart00300 ChSh Chromo Shadow Domain.
Probab=41.67 E-value=20 Score=32.31 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=20.6
Q ss_pred cchhhhhhhccCCCCceEEEEEec
Q 000496 192 TTVDRILACRGEDDEKEYLVKYKE 215 (1462)
Q Consensus 192 ~~veRII~~r~~~~~~eyLVKWk~ 215 (1462)
..+++|+.....++...||+||++
T Consensus 7 ~~~e~Ivg~~d~~G~l~flikwk~ 30 (61)
T smart00300 7 KSWEDIVGITKDDGELTFLIKWKD 30 (61)
T ss_pred CCHHHHhceecCCCeEEEEEEEeC
Confidence 357888888778899999999999
No 463
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=41.52 E-value=42 Score=35.98 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=37.6
Q ss_pred hhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHH
Q 000496 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL 644 (1462)
Q Consensus 605 ~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L 644 (1462)
..++++.++.+|+.+...+|.||+|.+....++..|.+.|
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~L 49 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNL 49 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999999
No 464
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=41.46 E-value=79 Score=38.65 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=34.0
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHHHH
Q 000496 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1462)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k~ 355 (1462)
-+++++.-..|+|||+.|=|+....- ..|.=|.-..+...|.-|=++.
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc~----tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATECG----TTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhhc----CeEEEechhhhhhhhccchHHH
Confidence 36788999999999998777665431 2455555566778898775553
No 465
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=41.45 E-value=1.5e+02 Score=34.75 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=24.3
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEE
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVv 340 (1462)
.++.-..|.|||.++.-++.++...+ .++++|.
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~g-~~V~li~ 107 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQG-KSVLLAA 107 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEEe
Confidence 45668999999999988888776554 3555554
No 466
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=41.43 E-value=1.3e+02 Score=44.04 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHh--C-CCCcEEEEEcchhHH
Q 000496 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG--E-RISPHLVVAPLSTLR 346 (1462)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~--~-~~~p~LIVvP~sll~ 346 (1462)
..|-+-|.+++..+.. ...+-.+|.--.|+|||.+.-+++..+.. . ....++.++|..-..
T Consensus 966 ~~Lt~~Q~~Av~~il~--s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAA 1029 (1747)
T PRK13709 966 EGLTSGQRAATRMILE--STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAV 1029 (1747)
T ss_pred CCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHH
Confidence 4689999999987632 23567889999999999886555555432 1 223678889976443
No 467
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=40.93 E-value=5.3e+02 Score=35.45 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=24.5
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEc
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP 341 (1462)
.++.-++|.|||..|-++...|+... ..+|...
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~~~~--~~~~~~d 631 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLYGGE--QNLITIN 631 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhCCC--cceEEEe
Confidence 57899999999999998888876432 3444443
No 468
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=40.55 E-value=38 Score=38.40 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=33.0
Q ss_pred hhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcc
Q 000496 300 SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1462)
Q Consensus 300 ~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~ 342 (1462)
.+..|.-.+|+-..|.|||.-++.++..+......++|++..-
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 4456667899999999999999988887766533477777753
No 469
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=40.13 E-value=47 Score=35.05 Aligned_cols=83 Identities=19% Similarity=0.081 Sum_probs=55.9
Q ss_pred hhchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHh-c---CCeEEEEecCCCHHHHHHHHHHHhccCCCCceE
Q 000496 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-K---KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCF 680 (1462)
Q Consensus 605 ~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~~-~---gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvf 680 (1462)
..+.+..++.+|+.+...+|+||+|++.....++.|.+.|=. . -++..+..+.. ....- +
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~---------------~~~~P-V 73 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEGP---------------AAGQP-V 73 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCCC---------------CCCCC-E
Confidence 356688999999999999999999999999999999999932 2 23333322211 11122 4
Q ss_pred EeeccccccccCcccCCEEEEecCCC
Q 000496 681 LLSTRAGGLGINLATADTVIIYDSDW 706 (1462)
Q Consensus 681 LlSTragg~GINL~~Ad~VIi~D~dW 706 (1462)
+|+. +..-|...++.+|+++..+
T Consensus 74 ~l~~---~~~~~~~~~~~LinL~~~~ 96 (142)
T PRK05728 74 LLTW---PGKRNANHRDLLINLDGAV 96 (142)
T ss_pred EEEc---CCCCCCCCCcEEEECCCCC
Confidence 4441 1123566788888888764
No 470
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=39.96 E-value=14 Score=32.45 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=17.1
Q ss_pred hhhhhhhccCC-CCceEEEEEec
Q 000496 194 VDRILACRGED-DEKEYLVKYKE 215 (1462)
Q Consensus 194 veRII~~r~~~-~~~eyLVKWk~ 215 (1462)
+++|+.....+ |...||+||++
T Consensus 2 ~~~I~gat~~~~g~l~fl~kwk~ 24 (54)
T cd00034 2 VKPISGASKSDDGELTFLAKWKD 24 (54)
T ss_pred ceEEEEEEEcCCCeEEEEEEEeC
Confidence 56677665544 88999999999
No 471
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=39.54 E-value=72 Score=35.87 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=38.8
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHHHH
Q 000496 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1462)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k~ 355 (1462)
.+.-.+|+.+.|.|||..++.++...... ..++++|.......+-.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEEREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHHHHHHHHc
Confidence 44556789999999999999988776544 34888888877666666666554
No 472
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=39.27 E-value=1.1e+02 Score=41.05 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=23.8
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHH-hCCCCcEEEEEc
Q 000496 305 THVILADEMGLGKTIQSIAFLASLF-GERISPHLVVAP 341 (1462)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L~-~~~~~p~LIVvP 341 (1462)
.-..|.-..|.|||.++.-++..+. ..+...+.+|.-
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~ 223 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTT 223 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecC
Confidence 3356889999999988776666553 333334544443
No 473
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=39.25 E-value=72 Score=40.71 Aligned_cols=75 Identities=23% Similarity=0.419 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHhcCCCCcchhhhchhhcCCCHHHHH-HHHHHHHHhhhhccCCCCCccCCCCcCccchHHHHHHHHH
Q 000496 969 FSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIR-EYGILFLTHITEDITDSPTFSDGVPKEGLRIQDVLVRIAV 1047 (1462)
Q Consensus 969 F~~w~Rr~Fv~a~~KyG~~~~~~~~ia~eL~~Ks~eEvk-~Ya~lF~~~~~E~i~d~e~~~d~i~k~~~k~~~vl~Ri~~ 1047 (1462)
|++.+=...+.|+.+|| ..+|-.+-..+.+.|..+++ +|..++..+.+-
T Consensus 363 wt~~ED~~L~~AV~~Yg--~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~---------------------------- 412 (939)
T KOG0049|consen 363 WTDQEDVLLVCAVSRYG--AKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKV---------------------------- 412 (939)
T ss_pred CCCHHHHHHHHHHHHhC--ccchhhHHHhcCCccHHHHHHHHHHHHHHhhcc----------------------------
Q ss_pred HHHHHHHHHhccCCCCCCCccccccccccCCCCCCccCHHHHHHHHHHHHhhccchhHHh
Q 000496 1048 LLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKHGYGRWQAI 1107 (1462)
Q Consensus 1048 ~~ll~~Kv~~~~~~p~~~~~~~~l~~~y~~~~~~~~w~~eeDr~LL~~i~k~Gyg~We~I 1107 (1462)
..|+.-||-.||..|-+||-|+|-.|
T Consensus 413 ----------------------------------~rW~l~edeqL~~~V~~YG~g~Wakc 438 (939)
T KOG0049|consen 413 ----------------------------------ERWTLVEDEQLLYAVKVYGKGNWAKC 438 (939)
T ss_pred ----------------------------------CceeecchHHHHHHHHHHccchHHHH
No 474
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=39.07 E-value=74 Score=36.26 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=36.3
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHHH
Q 000496 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1462)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k 354 (1462)
..+.-.+|.-+.|.|||..++.++..+...+ .+++.|+......+-.+.+..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~~e~~~~~~~~~~~~ 73 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVSTQLTTTEFIKQMMS 73 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHH
Confidence 4566788999999999999988888776543 367777765444444444433
No 475
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=39.04 E-value=67 Score=39.26 Aligned_cols=60 Identities=20% Similarity=0.163 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHHHHhh--ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhH
Q 000496 285 SLHPYQLEGLNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~--~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll 345 (1462)
+|-+-|...+++++..+ ..+.+..|.-.-|+|||...=++...+.. ....+++++|+.+-
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~-~~~~~~~~a~tg~A 62 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS-RGKKVLVTAPTGIA 62 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc-ccceEEEecchHHH
Confidence 36678999988876555 45667789999999999987666666544 23488999998654
No 476
>CHL00176 ftsH cell division protein; Validated
Probab=38.97 E-value=1.2e+02 Score=39.85 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=24.3
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEc
Q 000496 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1462)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP 341 (1462)
..+.+|.-+.|+|||..|=+++..+ ..|++.+..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~----~~p~i~is~ 249 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEA----EVPFFSISG 249 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh----CCCeeeccH
Confidence 4578999999999999887776543 125555443
No 477
>PHA00012 I assembly protein
Probab=38.32 E-value=67 Score=38.58 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=19.3
Q ss_pred EEEecCCCchHHHHHHHHHHHHhCC
Q 000496 308 ILADEMGLGKTIQSIAFLASLFGER 332 (1462)
Q Consensus 308 ILADemGLGKTiqaIa~l~~L~~~~ 332 (1462)
++.--.|.|||+.|++-+.....++
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHcC
Confidence 4556789999999998777666665
No 478
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.28 E-value=3.7e+02 Score=33.22 Aligned_cols=70 Identities=20% Similarity=0.198 Sum_probs=42.9
Q ss_pred hhchHHHHHHHHHHHHHHcCCeEEEEecchh---hHHHHHHHHHhcCCeEE-EEecCCCHHHHHHHHHHHhccC
Q 000496 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQH---MLDLLEDYLTFKKWQYE-RIDGKVGGAERQIRIDRFNAKN 674 (1462)
Q Consensus 605 ~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~---~ldiLed~L~~~gi~~~-rIdGst~~~eRq~~Id~Fn~~~ 674 (1462)
+.+||...+.++...++.+|.|+.+.|-.+- ..|.|...-...+++|. .++..-+..--.+-+++|.+.+
T Consensus 110 qG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~ 183 (483)
T KOG0780|consen 110 QGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKEN 183 (483)
T ss_pred cCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcC
Confidence 4577777777777777777777777776542 44555555555566643 3334444555566777776543
No 479
>PRK08760 replicative DNA helicase; Provisional
Probab=38.12 E-value=83 Score=39.98 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=45.6
Q ss_pred HHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHHHH
Q 000496 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1462)
Q Consensus 293 gvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k~ 355 (1462)
.++-+...+..+.=.|||...|.|||.-++.++.........|++++..--...+|..-+-..
T Consensus 218 ~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~ 280 (476)
T PRK08760 218 DFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISS 280 (476)
T ss_pred HHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHh
Confidence 333444455667778999999999999999998876543334889988877777777665443
No 480
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=38.05 E-value=25 Score=40.94 Aligned_cols=36 Identities=31% Similarity=0.649 Sum_probs=29.8
Q ss_pred cccCCCCCCccCHHHHHHHHHHHHhhccchhHHhhhCc
Q 000496 1074 RYPGLRGGKFWKEEHDSLLLRAVLKHGYGRWQAIVDDK 1111 (1462)
Q Consensus 1074 ~y~~~~~~~~w~~eeDr~LL~~i~k~Gyg~We~Ik~D~ 1111 (1462)
.||- ....|+..|+..|+-++-..|+|+|+.|-+=.
T Consensus 58 sypI--~~e~WgadEEllli~~~~TlGlGNW~dIadyi 93 (432)
T COG5114 58 SYPI--GEEGWGADEELLLIECLDTLGLGNWEDIADYI 93 (432)
T ss_pred Cccc--cCCCcCchHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4543 35689999999999999999999999886543
No 481
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=38.00 E-value=17 Score=31.41 Aligned_cols=34 Identities=29% Similarity=0.763 Sum_probs=20.5
Q ss_pred ecCCCCCccccccCCC--------CCCCCCCCCCCCCccCCCC
Q 000496 65 SCDTCTYAYHAKCLVP--------PLKAPPSGSWRCPECVSPL 99 (1462)
Q Consensus 65 ~Cd~C~~~~H~~Cl~P--------pl~~~p~~~W~C~~C~~~~ 99 (1462)
.|..|...|+..=-+| ++.+. ..+|.||.|..+.
T Consensus 3 ~C~~CgyiYd~~~Gd~~~~i~pGt~f~~L-p~~w~CP~C~a~K 44 (50)
T cd00730 3 ECRICGYIYDPAEGDPDEGIPPGTPFEDL-PDDWVCPVCGAGK 44 (50)
T ss_pred CCCCCCeEECCCCCCcccCcCCCCCHhHC-CCCCCCCCCCCcH
Confidence 4777877776543222 11223 3589999997643
No 482
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=37.39 E-value=36 Score=41.19 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=33.5
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHHHH
Q 000496 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1462)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k~ 355 (1462)
....|.+|....|+|||..|-++.... ..+|+=|-=.++...|-.|-++.
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akea----ga~fInv~~s~lt~KWfgE~eKl 174 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKEA----GANFINVSVSNLTSKWFGEAQKL 174 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHHc----CCCcceeeccccchhhHHHHHHH
Confidence 367888999999999999887766542 12444444445556776665443
No 483
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=37.30 E-value=1.2e+02 Score=37.21 Aligned_cols=36 Identities=19% Similarity=0.104 Sum_probs=23.9
Q ss_pred EEEEecCCCchHHHHHHHHH-HHHhC-CCCcEEEEEcc
Q 000496 307 VILADEMGLGKTIQSIAFLA-SLFGE-RISPHLVVAPL 342 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~-~L~~~-~~~p~LIVvP~ 342 (1462)
.|+.-.-|+|||..++..+. .+... ....+||+-|.
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~ 41 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKV 41 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehh
Confidence 45667789999988664444 44443 34577888784
No 484
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=37.08 E-value=79 Score=36.50 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=38.6
Q ss_pred ccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHHH
Q 000496 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1462)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k 354 (1462)
..+...++.-.+|+|||+-++-|+......+ .|+|.|.-...-..-.+.+..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~g-e~vlyvs~~e~~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREG-EPVLYVSTEESPEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcC-CcEEEEEecCCHHHHHHHHHH
Confidence 5677788999999999999999999887762 488888875444443344433
No 485
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=36.97 E-value=42 Score=36.46 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=38.9
Q ss_pred cCCcEEEEecCCCchHHHHHHHHHHHHhC---------CCCcEEEEEcchhHHHHHHHHHHHC
Q 000496 303 KQTHVILADEMGLGKTIQSIAFLASLFGE---------RISPHLVVAPLSTLRNWEREFATWA 356 (1462)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~---------~~~p~LIVvP~sll~qW~~E~~k~~ 356 (1462)
.+.-++++-..|.|||..++.++..+... ...++|+|..-....++.+-+....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 46668999999999999999998887652 2348888888766667777776655
No 486
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=36.75 E-value=11 Score=30.34 Aligned_cols=41 Identities=27% Similarity=0.547 Sum_probs=29.0
Q ss_pred ccccCCCC-CeeecCCCCCccccccCCCCCCCCCCCCCCCCccCC
Q 000496 54 CQACGESE-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1462)
Q Consensus 54 C~~C~~~g-~ll~Cd~C~~~~H~~Cl~Ppl~~~p~~~W~C~~C~~ 97 (1462)
|.+|...- ..+....|...||..|+..-+.. +...||.|..
T Consensus 2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCRT 43 (45)
T ss_pred CCcCchhhhCceEecCCCChhcHHHHHHHHHh---CcCCCCCCCC
Confidence 77777654 44555669999999999654433 4567999875
No 487
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=36.64 E-value=3.1e+02 Score=33.67 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHhh-c--cCCcEEEEecCCCchHHHHHHHHHHHHhC
Q 000496 285 SLHPYQLEGLNFLRFSW-S--KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~-~--~~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
.-|+-|++.+......+ . ...+.++.-.+|+|||.++--++..+...
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 36788888875433322 2 23458999999999999988888887665
No 488
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=36.49 E-value=1.6e+02 Score=35.07 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.5
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhC
Q 000496 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1462)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~ 331 (1462)
.++..+-|.|||..|..++..+...
T Consensus 29 ~Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 29 HIIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred EEeECCCCCCHHHHHHHHHHHHcCC
Confidence 3789999999999999999888654
No 489
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=36.47 E-value=93 Score=34.99 Aligned_cols=52 Identities=23% Similarity=0.231 Sum_probs=35.4
Q ss_pred hccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHH
Q 000496 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (1462)
Q Consensus 301 ~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~ 353 (1462)
+..+...+|+-+.|+|||..+..++...... ..++++|.-.....+..+...
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g~~~~~is~e~~~~~i~~~~~ 68 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD-GDPVIYVTTEESRESIIRQAA 68 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEEccCCHHHHHHHHH
Confidence 3456677899999999999998888765543 237777776544444443333
No 490
>PRK10689 transcription-repair coupling factor; Provisional
Probab=36.19 E-value=1.7e+02 Score=41.24 Aligned_cols=96 Identities=10% Similarity=0.038 Sum_probs=65.2
Q ss_pred hchHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHH----hcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEE
Q 000496 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1462)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ldiLed~L~----~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfL 681 (1462)
.+||..+....+-.....|.+|+|.+..+..+.-+...+. ..++++..+.|..+..++..++.....+... ++
T Consensus 631 GsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~d---IV 707 (1147)
T PRK10689 631 GFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKID---IL 707 (1147)
T ss_pred CcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCC---EE
Confidence 5778765444333344578999999998877665555443 3356788899999999999998887654333 45
Q ss_pred eecc-ccccccCcccCCEEEEecC
Q 000496 682 LSTR-AGGLGINLATADTVIIYDS 704 (1462)
Q Consensus 682 lSTr-agg~GINL~~Ad~VIi~D~ 704 (1462)
+.|. .....+++.....||+=+-
T Consensus 708 VgTp~lL~~~v~~~~L~lLVIDEa 731 (1147)
T PRK10689 708 IGTHKLLQSDVKWKDLGLLIVDEE 731 (1147)
T ss_pred EECHHHHhCCCCHhhCCEEEEech
Confidence 5554 4445567777888877553
No 491
>PRK05748 replicative DNA helicase; Provisional
Probab=35.66 E-value=77 Score=39.84 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=42.3
Q ss_pred HHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHH
Q 000496 292 EGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (1462)
Q Consensus 292 egvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~ 352 (1462)
.+++-+...+..+.-.+|+..+|.|||.-++.++.........+++++..--.-.+....+
T Consensus 191 ~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~ 251 (448)
T PRK05748 191 TDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRM 251 (448)
T ss_pred HHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHH
Confidence 3454454456677778999999999999999998876543334888887655555544433
No 492
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=35.64 E-value=2.6e+02 Score=41.95 Aligned_cols=63 Identities=19% Similarity=0.085 Sum_probs=44.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHH
Q 000496 281 LSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (1462)
Q Consensus 281 ~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~ 346 (1462)
+.+..|-+-|.+++.-+.. ....-.||.-.-|+|||.+.-+++..+... ...+++++|.....
T Consensus 425 ~~~~~Ls~~Q~~Av~~il~--s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~-G~~V~~lAPTgrAA 487 (1960)
T TIGR02760 425 LSEFALSPSNKDAVSTLFT--STKRFIIINGFGGTGSTEIAQLLLHLASEQ-GYEIQIITAGSLSA 487 (1960)
T ss_pred cccCCCCHHHHHHHHHHHh--CCCCeEEEEECCCCCHHHHHHHHHHHHHhc-CCeEEEEeCCHHHH
Confidence 3346799999999976532 345667888999999998766665554433 34899999986543
No 493
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=35.18 E-value=89 Score=44.49 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhCCC--CcEEEEEcchhHHHHHH
Q 000496 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI--SPHLVVAPLSTLRNWER 350 (1462)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~--~p~LIVvP~sll~qW~~ 350 (1462)
+.+-|..++. ..+.+.++...-|+|||.+.+.-+..+...+. ..+|||+=+....++.+
T Consensus 2 ~t~~Q~~ai~------~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~ 62 (1232)
T TIGR02785 2 WTDEQWQAIY------TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMK 62 (1232)
T ss_pred CCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHH
Confidence 4578988875 56888999999999999998887776655443 36888887766655533
No 494
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.82 E-value=63 Score=40.68 Aligned_cols=121 Identities=19% Similarity=0.252 Sum_probs=82.2
Q ss_pred HHHHHHHHHHcC-CeEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCceEEeecccc-ccc
Q 000496 613 LDKMMVKLKEQG-HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG-GLG 690 (1462)
Q Consensus 613 L~klL~~l~~~g-~KVLIFSq~~~~ldiLed~L~~~gi~~~rIdGst~~~eRq~~Id~Fn~~~s~~fvfLlSTrag-g~G 690 (1462)
+.++++.+...+ ..+|||-..---.=.|..|+...++.|..|.--++...-.++-+-|-.+... ++|.+-|+- =.-
T Consensus 540 v~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~--vlLyTER~hffrR 617 (698)
T KOG2340|consen 540 VDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKS--VLLYTERAHFFRR 617 (698)
T ss_pred HHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCce--EEEEehhhhhhhh
Confidence 567788776654 4678886644434457888888899999998877777777777888775554 466666663 345
Q ss_pred cCcccCCEEEEecCCCChhhHHHHH---hhhhccCCC--CcEEEEEEecC
Q 000496 691 INLATADTVIIYDSDWNPHADLQAM---ARAHRLGQT--NKVMIFRLITR 735 (1462)
Q Consensus 691 INL~~Ad~VIi~D~dWNP~~d~QAi---gRahRiGQ~--k~V~VyrLvt~ 735 (1462)
..+..+..||+|.||-||+-|--.+ +|.--.|.+ ..-.+--|+++
T Consensus 618 ~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytK 667 (698)
T KOG2340|consen 618 YHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTK 667 (698)
T ss_pred heecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeec
Confidence 5677889999999999999876544 444444433 22333344444
No 495
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=34.41 E-value=83 Score=41.99 Aligned_cols=32 Identities=31% Similarity=0.383 Sum_probs=25.2
Q ss_pred HhhccCCcEEEEecCCCchHHHHHHHHHHHHh
Q 000496 299 FSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1462)
Q Consensus 299 ~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~ 330 (1462)
.....+.-+|+--++|+|||.|...+|..-+.
T Consensus 388 q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~ 419 (1282)
T KOG0921|consen 388 QAVAENRVVIIKGETGCGKSTQVAQFLLESFL 419 (1282)
T ss_pred HHHhcCceeeEeecccccchhHHHHHHHHHHh
Confidence 34456777899999999999998888776543
No 496
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=33.87 E-value=40 Score=37.78 Aligned_cols=41 Identities=32% Similarity=0.446 Sum_probs=26.0
Q ss_pred cceeEecccccccCCcchHHHHHHHhccccceEeeccccccCCH
Q 000496 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNL 471 (1462)
Q Consensus 428 ~w~~VIVDEAHrlKN~~Sk~~~~l~~l~~~~rLLLTGTPlqNnl 471 (1462)
..+.+||||++.+-... +.- +........+.|-|=|.|-..
T Consensus 62 ~~~~liiDE~~~~~~g~--l~~-l~~~~~~~~~~l~GDp~Q~~~ 102 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPGY--LLL-LLSLSPAKNVILFGDPLQIPY 102 (234)
T ss_pred cCCEEEEeccccCChHH--HHH-HHhhccCcceEEEECchhccC
Confidence 46789999999864321 111 333344446777799988653
No 497
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=33.80 E-value=1.3e+02 Score=37.35 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=40.3
Q ss_pred CcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEcchhHHHHHHHHHHHC
Q 000496 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (1462)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k~~ 356 (1462)
.-.+++-+.|.||+..-+-++..+...+ ++|.|.=..-+.||+--..+..
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYVsGEES~~QiklRA~RL~ 143 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG--KVLYVSGEESLQQIKLRADRLG 143 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC--cEEEEeCCcCHHHHHHHHHHhC
Confidence 3357899999999987777777776554 9999999999999987777764
No 498
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=33.76 E-value=1.9e+02 Score=35.86 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=30.3
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHHHhCCCCcEEEEEc-c---hhHHHHHH
Q 000496 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-L---STLRNWER 350 (1462)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP-~---sll~qW~~ 350 (1462)
+...+|.-..|.|||.++..++..+...+. ++.+|+- . ..+.||..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~-~V~lItaDtyR~gAveQLk~ 255 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNR-TVGFITTDTFRSGAVEQFQG 255 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEeCCccCccHHHHHHH
Confidence 444567889999999998888877755543 4444443 2 33566654
No 499
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=33.49 E-value=68 Score=42.96 Aligned_cols=52 Identities=23% Similarity=0.306 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHHHhC-CCC--cEEEEEcc
Q 000496 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RIS--PHLVVAPL 342 (1462)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~-~~~--p~LIVvP~ 342 (1462)
.|.|-|..+|. ...+..++-...|+|||.+.+.-+.+|... +.. .+|+|+-+
T Consensus 4 ~Ln~~Q~~av~------~~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT 58 (726)
T TIGR01073 4 HLNPEQREAVK------TTEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFT 58 (726)
T ss_pred ccCHHHHHHHh------CCCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeecc
Confidence 48899999986 345677788899999999999999999864 333 57777665
No 500
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=33.42 E-value=68 Score=38.79 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=28.0
Q ss_pred HHHHHHhhccCCcEEEEecCCCchHHHHHHHHHHH
Q 000496 294 LNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL 328 (1462)
Q Consensus 294 vnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L 328 (1462)
..||..+...+.+.+++-.+|+|||...-+++.++
T Consensus 150 ~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 150 KEFLEHAVISKKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhC
Confidence 35666667789999999999999998776766655
Done!