ATM protein (Arabidopsis thaliana)

STRING 9.05

ATM protein (Arabidopsis thaliana) - STRING network view

This is the evidence view. Different line colors represent the types of evidence for the association.




confidence	evidence	actions	interactive	advanced	more	less	save

Your Input:
	ATM	ATM (ATAXIA-TELANGIECTASIA MUTATED); 1-phosphatidylinositol-3-phosphate 5-kinase; encodes a homolog of the human ATM gene, which is mutated in ataxia telangiectasia, a chromosome instability disorder. Characterization of mutants suggest a role in repairing DNA in response to ionizing radiation as well as during meiosis. The protein has kinase domains and shows kinase activity in orthologs. There is also evidence that ATM might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres. ; Serine/threonine protein kinase which activates checkpoint sig [...] (3845 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	BRCA1	ATBRCA1; ubiquitin-protein ligase; Encodes AtBRCA1, an ortholog of the human breast cancer susc [...] (941 aa)		•	0.871
	H2AXA	H2AXA; DNA binding; Variant histone H2A which replaces conventional H2A in a subset of nucleoso [...] (142 aa)		•	0.867
	RAD50	RAD50; ATP binding / nuclease/ zinc ion binding; RAD50; FUNCTIONS IN- zinc ion binding, ATP bin [...] (1316 aa)	•	•	0.847
	GAMMA-H2AX	GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX); DNA binding; Variant histone H2A which replaces conven [...] (142 aa)		•	0.821
	ATRAD51	ATRAD51; ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-tri [...] (342 aa)		•	0.788
	MRE11	MRE11 (meiotic recombination 11); endonuclease/ exonuclease/ hydrolase/ manganese ion binding / [...] (720 aa)		•	0.786
	PARP2	PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2); DNA binding / NAD or NADH binding / NAD+ ADP-ribosyltran [...] (983 aa)		•	0.748
	ERCC1	ERCC1; 5'-flap endonuclease; encodes a homolog of human ERCC1 protein (yeast RAD10), which is a [...] (410 aa)		•	0.677
	APP	APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE); NAD+ ADP-ribosyltransferase/ nucleic acid bindin [...] (637 aa)		•	0.677
	WEE1	WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG); kinase/ protein kinase; Protein kinase that negatively [...] (500 aa)		•	0.659

Views:

Info & Parameters ...

Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:

Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining

required confidence (score):

interactors shown:

or custom value:

or custom limit:

additional (white) nodes

Server load: medium (41%)

Permalink