Query 000498
Match_columns 1460
No_of_seqs 381 out of 1508
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 10:46:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000498.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000498hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0892 Protein kinase ATM/Tel 100.0 3E-176 6E-181 1696.9 79.1 1267 5-1460 1510-2806(2806)
2 KOG0890 Protein kinase of the 100.0 3E-155 6E-160 1497.6 83.2 1220 11-1460 1080-2382(2382)
3 KOG0891 DNA-dependent protein 100.0 4.1E-98 9E-103 999.4 48.2 1083 182-1460 1128-2341(2341)
4 COG5032 TEL1 Phosphatidylinosi 100.0 3E-76 6.6E-81 812.8 59.9 1073 183-1460 921-2105(2105)
5 KOG0889 Histone acetyltransfer 100.0 7.5E-66 1.6E-70 681.8 64.9 962 330-1460 2413-3550(3550)
6 cd05171 PIKKc_ATM Ataxia telan 100.0 7.7E-69 1.7E-73 615.3 26.5 274 1100-1377 1-279 (279)
7 cd05170 PIKKc_SMG1 Suppressor 100.0 4.1E-67 8.9E-72 607.6 25.6 276 1100-1376 1-306 (307)
8 cd05163 TRRAP TRansformation/t 100.0 8.6E-67 1.9E-71 588.5 23.8 247 1100-1376 1-252 (253)
9 cd05169 PIKKc_TOR TOR (Target 100.0 2.3E-66 5E-71 597.6 24.0 276 1100-1377 1-280 (280)
10 cd05172 PIKKc_DNA-PK DNA-depen 100.0 2.6E-64 5.6E-69 562.5 23.9 233 1100-1376 1-234 (235)
11 cd00892 PIKKc_ATR ATR (Ataxia 100.0 7.4E-63 1.6E-67 552.0 23.7 236 1100-1376 1-236 (237)
12 cd05164 PIKKc Phosphoinositide 100.0 2E-59 4.2E-64 519.9 23.2 222 1100-1370 1-222 (222)
13 cd00142 PI3Kc_like Phosphoinos 100.0 1.6E-54 3.6E-59 481.6 23.0 219 1100-1370 1-219 (219)
14 cd00891 PI3Kc Phosphoinositide 100.0 4.8E-53 1E-57 494.5 30.3 250 1080-1376 47-303 (352)
15 cd00896 PI3Kc_III Phosphoinosi 100.0 8.8E-53 1.9E-57 491.2 28.0 287 1081-1460 52-350 (350)
16 cd05166 PI3Kc_II Phosphoinosit 100.0 5.8E-52 1.3E-56 484.1 29.3 248 1081-1376 48-304 (353)
17 cd05165 PI3Kc_I Phosphoinositi 100.0 8.8E-51 1.9E-55 473.2 29.2 250 1081-1376 53-316 (366)
18 cd05177 PI3Kc_C2_gamma Phospho 100.0 9.4E-51 2E-55 471.1 29.2 248 1081-1376 49-305 (354)
19 cd05168 PI4Kc_III_beta Phospho 100.0 1.9E-51 4.1E-56 468.6 20.6 269 1112-1458 14-287 (293)
20 smart00146 PI3Kc Phosphoinosit 100.0 2.5E-51 5.5E-56 450.8 19.3 199 1130-1378 1-200 (202)
21 cd00894 PI3Kc_IB_gamma Phospho 100.0 1.4E-48 3.1E-53 453.0 29.9 248 1080-1374 53-313 (365)
22 cd05174 PI3Kc_IA_delta Phospho 100.0 1.4E-48 2.9E-53 452.6 25.1 249 1081-1374 52-309 (361)
23 cd05176 PI3Kc_C2_alpha Phospho 100.0 7.3E-48 1.6E-52 444.5 29.9 287 1040-1375 9-303 (353)
24 cd00893 PI4Kc_III Phosphoinosi 100.0 7.5E-49 1.6E-53 446.5 21.0 222 1108-1376 9-238 (289)
25 cd05173 PI3Kc_IA_beta Phosphoi 100.0 4E-48 8.7E-53 450.4 24.5 250 1081-1376 52-311 (362)
26 PF00454 PI3_PI4_kinase: Phosp 100.0 5.9E-49 1.3E-53 443.8 16.3 229 1128-1376 1-234 (235)
27 cd05167 PI4Kc_III_alpha Phosph 100.0 5.7E-47 1.2E-51 433.9 25.3 260 1104-1446 15-294 (311)
28 cd00895 PI3Kc_C2_beta Phosphoi 100.0 7.6E-45 1.7E-49 419.6 28.7 246 1081-1374 49-303 (354)
29 cd05175 PI3Kc_IA_alpha Phospho 100.0 3.1E-44 6.7E-49 414.7 25.9 247 1081-1374 52-314 (366)
30 KOG0906 Phosphatidylinositol 3 100.0 3.4E-36 7.3E-41 351.7 31.4 440 866-1381 327-794 (843)
31 KOG0905 Phosphoinositide 3-kin 100.0 1.3E-36 2.7E-41 370.9 25.1 386 925-1376 902-1298(1639)
32 KOG0904 Phosphatidylinositol 3 100.0 1.1E-34 2.4E-39 348.3 27.0 410 896-1376 579-1027(1076)
33 PF02259 FAT: FAT domain; Int 100.0 2.1E-33 4.5E-38 334.9 30.2 314 509-918 1-352 (352)
34 KOG0902 Phosphatidylinositol 4 100.0 1.1E-27 2.3E-32 299.1 26.3 389 928-1381 1351-1756(1803)
35 KOG0903 Phosphatidylinositol 4 99.9 2.2E-25 4.7E-30 267.0 17.5 198 1125-1369 584-786 (847)
36 PTZ00303 phosphatidylinositol 99.9 1.4E-24 3.1E-29 255.8 12.9 165 1114-1336 1026-1201(1374)
37 PF02260 FATC: FATC domain; I 99.3 1.9E-13 4.2E-18 104.3 0.9 32 1429-1460 2-33 (33)
38 KOG0892 Protein kinase ATM/Tel 98.9 5.1E-10 1.1E-14 150.8 5.3 242 1110-1378 2172-2416(2806)
39 TIGR02917 PEP_TPR_lipo putativ 95.5 2 4.3E-05 57.4 25.8 318 336-749 571-898 (899)
40 TIGR02917 PEP_TPR_lipo putativ 94.1 30 0.00065 46.2 31.7 96 681-791 737-832 (899)
41 PLN03218 maturation of RBCL 1; 89.9 57 0.0012 45.4 26.2 81 381-490 473-563 (1060)
42 PLN03081 pentatricopeptide (PP 88.4 52 0.0011 43.8 24.0 290 381-751 260-557 (697)
43 PRK15174 Vi polysaccharide exp 87.9 93 0.002 41.2 25.6 115 334-492 44-167 (656)
44 smart00145 PI3Ka Phosphoinosit 87.9 1 2.2E-05 49.3 6.3 94 895-994 43-154 (184)
45 PRK10747 putative protoheme IX 86.6 61 0.0013 40.0 21.6 59 680-747 328-386 (398)
46 cd00870 PI3Ka_III Phosphoinosi 83.0 1.3 2.8E-05 47.7 4.1 91 895-985 45-151 (166)
47 cd00872 PI3Ka_I Phosphoinositi 82.6 1.1 2.4E-05 48.4 3.4 85 895-985 38-137 (171)
48 PF13575 DUF4135: Domain of un 80.7 7.6 0.00016 47.5 10.1 112 1123-1311 67-178 (370)
49 cd00864 PI3Ka Phosphoinositide 80.5 3.3 7.1E-05 44.1 5.9 91 896-992 39-147 (152)
50 PLN03218 maturation of RBCL 1; 78.7 1.4E+02 0.003 41.8 22.0 299 333-709 473-783 (1060)
51 PRK11447 cellulose synthase su 76.6 3.5E+02 0.0077 38.4 29.0 114 335-493 388-519 (1157)
52 PRK15174 Vi polysaccharide exp 74.6 1.5E+02 0.0033 39.2 20.2 67 679-753 283-349 (656)
53 PLN03077 Protein ECB2; Provisi 72.8 3.5E+02 0.0076 37.0 23.7 51 382-432 426-482 (857)
54 TIGR02906 spore_CotS spore coa 72.7 48 0.001 39.0 13.7 31 1276-1308 184-214 (313)
55 PLN03081 pentatricopeptide (PP 71.9 1.7E+02 0.0037 38.9 19.9 282 335-709 262-557 (697)
56 PF00613 PI3Ka: Phosphoinositi 71.6 3.6 7.9E-05 45.1 3.5 93 896-994 45-155 (184)
57 PRK11447 cellulose synthase su 69.6 4.9E+02 0.011 37.0 30.9 79 682-771 463-541 (1157)
58 PLN03077 Protein ECB2; Provisi 69.3 4.3E+02 0.0092 36.2 29.4 80 380-488 323-408 (857)
59 cd05145 RIO1_like RIO kinase f 68.3 5.9 0.00013 43.4 4.4 48 1284-1355 142-189 (190)
60 PF13432 TPR_16: Tetratricopep 68.2 24 0.00053 31.0 7.6 61 685-753 2-62 (65)
61 PF14559 TPR_19: Tetratricopep 66.2 13 0.00028 33.0 5.3 56 691-754 2-57 (68)
62 cd00869 PI3Ka_II Phosphoinosit 64.5 7.7 0.00017 41.9 4.1 93 895-993 38-148 (169)
63 PF12688 TPR_5: Tetratrico pep 62.1 17 0.00037 37.1 5.9 85 412-523 8-92 (120)
64 KOG1129 TPR repeat-containing 61.6 1E+02 0.0022 36.7 12.3 85 336-435 227-320 (478)
65 TIGR00990 3a0801s09 mitochondr 61.0 4E+02 0.0086 34.9 19.9 52 691-750 519-570 (615)
66 cd05147 RIO1_euk RIO kinase fa 59.9 5.4 0.00012 43.9 2.0 25 1284-1310 142-166 (190)
67 KOG3365 NADH:ubiquinone oxidor 57.6 6.3 0.00014 40.3 1.9 37 1413-1459 93-129 (145)
68 PF04781 DUF627: Protein of un 54.9 42 0.00092 33.8 7.0 64 727-791 1-66 (111)
69 PF14559 TPR_19: Tetratricopep 54.9 21 0.00045 31.6 4.6 52 417-498 3-54 (68)
70 PF13176 TPR_7: Tetratricopept 52.6 19 0.00041 28.2 3.5 25 410-434 4-28 (36)
71 PRK10370 formate-dependent nit 52.1 1.4E+02 0.0031 33.1 11.6 68 678-753 71-141 (198)
72 TIGR02172 Fb_sc_TIGR02172 Fibr 51.9 88 0.0019 35.4 10.2 27 1280-1308 154-180 (226)
73 KOG4626 O-linked N-acetylgluco 51.3 6.8E+02 0.015 32.6 26.3 90 332-435 48-146 (966)
74 KOG3087 Serine/threonine prote 50.8 89 0.0019 34.7 9.2 28 1284-1311 137-166 (229)
75 cd05151 ChoK Choline Kinase (C 50.7 12 0.00026 39.4 2.9 30 1278-1309 106-135 (170)
76 KOG0608 Warts/lats-like serine 50.5 10 0.00023 47.9 2.5 38 1270-1310 739-778 (1034)
77 TIGR03843 conserved hypothetic 49.8 14 0.0003 42.0 3.1 45 1270-1315 134-178 (253)
78 PF08424 NRDE-2: NRDE-2, neces 49.8 1.2E+02 0.0026 36.4 11.3 98 639-737 82-211 (321)
79 PF13371 TPR_9: Tetratricopept 49.6 74 0.0016 28.4 7.5 59 688-754 3-61 (73)
80 PRK11788 tetratricopeptide rep 49.6 5.4E+02 0.012 31.0 29.3 95 683-789 252-349 (389)
81 PF13414 TPR_11: TPR repeat; P 49.4 75 0.0016 28.1 7.4 63 680-750 3-66 (69)
82 PF02985 HEAT: HEAT repeat; I 48.7 21 0.00046 27.1 3.1 29 94-122 1-29 (31)
83 TIGR02795 tol_pal_ybgF tol-pal 48.2 1.8E+02 0.0039 28.1 10.7 84 682-770 4-87 (119)
84 PF13429 TPR_15: Tetratricopep 47.4 25 0.00054 40.8 5.0 86 334-435 80-176 (280)
85 cd00871 PI4Ka Phosphoinositide 46.1 24 0.00052 38.4 4.1 64 924-995 82-148 (175)
86 TIGR03724 arch_bud32 Kae1-asso 45.4 16 0.00034 39.9 2.8 24 1283-1308 113-136 (199)
87 PF06293 Kdo: Lipopolysacchari 43.9 40 0.00086 37.5 5.7 48 1144-1200 56-111 (206)
88 PF13414 TPR_11: TPR repeat; P 43.2 54 0.0012 29.0 5.5 50 409-488 7-57 (69)
89 cd05144 RIO2_C RIO kinase fami 41.4 20 0.00044 39.3 2.9 30 1282-1312 147-176 (198)
90 TIGR00990 3a0801s09 mitochondr 40.5 9.7E+02 0.021 31.3 36.6 77 680-767 331-407 (615)
91 KOG0594 Protein kinase PCTAIRE 40.1 17 0.00037 43.1 2.1 28 1284-1312 144-171 (323)
92 PF13428 TPR_14: Tetratricopep 39.9 75 0.0016 25.9 5.3 30 725-754 4-33 (44)
93 PRK10359 lipopolysaccharide co 39.8 18 0.0004 41.2 2.2 23 1284-1308 159-181 (232)
94 cd05119 RIO RIO kinase family, 39.7 20 0.00043 38.6 2.5 26 1283-1310 138-163 (187)
95 COG0661 AarF Predicted unusual 39.2 19 0.00041 45.9 2.5 48 1139-1197 207-256 (517)
96 cd04792 LanM-like LanM-like pr 39.2 2.5E+02 0.0053 38.3 13.2 108 1124-1311 111-218 (825)
97 TIGR02521 type_IV_pilW type IV 39.2 2.9E+02 0.0063 29.6 11.7 86 335-434 34-128 (234)
98 PF01636 APH: Phosphotransfera 39.1 21 0.00045 39.5 2.5 33 1276-1308 163-195 (239)
99 PRK14879 serine/threonine prot 38.4 23 0.0005 38.9 2.8 24 1283-1308 118-141 (211)
100 PRK04750 ubiB putative ubiquin 38.3 18 0.00039 46.3 2.1 25 1283-1308 283-311 (537)
101 smart00090 RIO RIO-like kinase 37.6 23 0.00051 40.4 2.7 28 1283-1312 172-199 (237)
102 PF13432 TPR_16: Tetratricopep 37.6 64 0.0014 28.3 5.0 51 411-491 3-53 (65)
103 PRK15179 Vi polysaccharide bio 37.0 4.2E+02 0.0092 35.4 14.3 110 335-488 89-207 (694)
104 TIGR02552 LcrH_SycD type III s 36.1 2.1E+02 0.0045 28.8 9.2 67 679-753 50-116 (135)
105 PF13424 TPR_12: Tetratricopep 35.9 1.1E+02 0.0025 27.7 6.6 70 679-749 4-73 (78)
106 cd00189 TPR Tetratricopeptide 35.2 2.8E+02 0.0061 24.1 9.1 62 683-752 3-64 (100)
107 TIGR01982 UbiB 2-polyprenylphe 35.1 25 0.00054 44.0 2.6 24 1284-1308 281-304 (437)
108 PF01163 RIO1: RIO1 family; I 33.2 21 0.00045 39.4 1.3 43 1284-1333 131-173 (188)
109 PRK09550 mtnK methylthioribose 33.1 6E+02 0.013 31.6 13.9 30 1278-1309 222-251 (401)
110 KOG0603 Ribosomal protein S6 k 33.0 28 0.00061 44.4 2.5 53 1273-1330 428-480 (612)
111 COG3642 Mn2+-dependent serine/ 32.5 35 0.00075 37.7 2.7 33 1166-1199 57-91 (204)
112 KOG0616 cAMP-dependent protein 32.4 25 0.00053 41.2 1.7 26 1284-1310 168-193 (355)
113 PF13429 TPR_15: Tetratricopep 31.5 1.8E+02 0.0039 33.6 8.9 110 335-488 149-267 (280)
114 PF13525 YfiO: Outer membrane 31.1 3.6E+02 0.0079 29.8 10.8 82 681-767 6-87 (203)
115 PF00515 TPR_1: Tetratricopept 30.1 76 0.0016 23.9 3.6 25 411-435 7-31 (34)
116 PRK12274 serine/threonine prot 29.5 40 0.00086 38.1 2.7 25 1284-1309 115-140 (218)
117 PRK01723 3-deoxy-D-manno-octul 29.2 38 0.00082 38.8 2.6 26 1283-1309 165-190 (239)
118 cd05156 ChoK_euk Choline Kinas 29.1 72 0.0016 37.4 5.1 33 1276-1308 176-211 (302)
119 PF09976 TPR_21: Tetratricopep 27.9 1.5E+02 0.0033 30.7 6.7 62 682-748 50-111 (145)
120 cd05120 APH_ChoK_like Aminogly 27.8 50 0.0011 33.1 3.0 25 1284-1309 113-137 (155)
121 TIGR03302 OM_YfiO outer membra 27.7 4.3E+02 0.0092 29.5 10.8 85 680-769 33-117 (235)
122 TIGR00540 hemY_coli hemY prote 27.4 1.2E+03 0.027 28.6 20.6 60 681-747 336-395 (409)
123 PF07719 TPR_2: Tetratricopept 27.3 86 0.0019 23.4 3.5 26 411-436 7-32 (34)
124 PF13371 TPR_9: Tetratricopept 27.2 1.4E+02 0.003 26.6 5.5 51 413-493 3-53 (73)
125 cd05154 ACAD10_11_like Acyl-Co 26.8 48 0.001 36.4 2.8 32 1277-1308 172-204 (223)
126 PF13424 TPR_12: Tetratricopep 26.4 1.5E+02 0.0032 26.9 5.6 26 409-434 9-34 (78)
127 PF12688 TPR_5: Tetratrico pep 26.2 2.1E+02 0.0046 29.2 7.1 62 679-745 37-98 (120)
128 PLN03088 SGT1, suppressor of 26.0 3.1E+02 0.0067 33.4 9.8 87 335-435 5-100 (356)
129 TIGR02795 tol_pal_ybgF tol-pal 25.9 3.5E+02 0.0076 26.0 8.6 69 682-755 41-109 (119)
130 PF13513 HEAT_EZ: HEAT-like re 25.8 87 0.0019 26.7 3.6 34 87-120 22-55 (55)
131 TIGR02521 type_IV_pilW type IV 25.3 6.6E+02 0.014 26.7 11.6 86 336-435 69-165 (234)
132 PRK05685 fliS flagellar protei 24.7 4E+02 0.0087 27.7 8.9 48 548-595 39-93 (132)
133 cd05157 ETNK_euk Ethanolamine 24.4 1.3E+02 0.0028 33.8 5.7 32 1277-1308 168-199 (235)
134 PRK10866 outer membrane biogen 23.3 5.4E+02 0.012 29.6 10.5 82 681-767 33-114 (243)
135 PF06176 WaaY: Lipopolysacchar 23.1 64 0.0014 36.7 2.9 22 1284-1307 159-180 (229)
136 PF00069 Pkinase: Protein kina 22.8 94 0.002 34.8 4.3 48 1283-1331 121-171 (260)
137 cd05155 APH_ChoK_like_1 Unchar 22.7 64 0.0014 36.5 2.9 30 1277-1308 162-192 (235)
138 PF02561 FliS: Flagellar prote 22.4 5E+02 0.011 26.4 9.0 49 547-595 32-87 (122)
139 KOG1006 Mitogen-activated prot 22.2 53 0.0012 38.0 2.0 59 1284-1343 192-268 (361)
140 PF01633 Choline_kinase: Choli 22.2 98 0.0021 34.3 4.2 32 1277-1308 141-172 (211)
141 PRK10803 tol-pal system protei 21.8 5.9E+02 0.013 29.7 10.5 83 682-769 144-227 (263)
142 PRK15359 type III secretion sy 20.9 6.1E+02 0.013 26.4 9.6 67 679-753 57-123 (144)
143 PF12895 Apc3: Anaphase-promot 20.8 2.9E+02 0.0064 25.5 6.5 73 346-431 3-84 (84)
144 cd00180 PKc Catalytic domain o 20.7 2.5E+02 0.0055 29.4 6.9 29 1282-1310 114-142 (215)
145 PLN02421 phosphotransferase, a 20.5 1.2E+02 0.0027 36.4 4.8 33 1277-1309 180-212 (330)
146 KOG1155 Anaphase-promoting com 20.3 3.5E+02 0.0075 33.9 8.2 83 337-433 403-494 (559)
No 1
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.7e-176 Score=1696.93 Aligned_cols=1267 Identities=40% Similarity=0.591 Sum_probs=1010.9
Q ss_pred cccCCChhHHHHHHHHHHhhcCCCcccHHHHHHHHHhhhCCCCCcEEEEecCCCccccccccCCCCCCCCCccceeccCc
Q 000498 5 VDWHSDHDIVHAVWTLVHMCCSDDASSIRAWVSDFISRVGIGDPHCVVFHLPRDSIYMHACRPINHGSGSATEFNFHLDA 84 (1460)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1460)
.+|+.+++++..+|..+++-....+-+.....-+|+.+++..|+|.++|++|+..+++|+-.-..+. .+.-+.-.+-.
T Consensus 1510 ~~~q~~~e~v~~~~~~~q~~~~~~~~~~~e~~~~~~~~v~~~~~~~L~~~~~~~~~~s~g~~i~~~~--~~~n~~~~~K~ 1587 (2806)
T KOG0892|consen 1510 WFWQKSPEIVDLVHYYPQTDPRLCDTSNYEPSKDFLWKVICQDDCSLLFKLPILLDSSIGIQIRMFF--EGSNIMELTKN 1587 (2806)
T ss_pred hHHhcCccceechhhcccCChhhhhhcccCchhhhhhchhccccceEEEEcCcccccchhhhhhhcc--ccchhhhhhhh
Confidence 4799999999999999999999999999999999999999999999999999998877754432222 23334444556
Q ss_pred cchHHHHHHHHHHHHHhhhcCcchhhchHHHHHHHHhccccccchhhchhHHHHHHHHHhhccCcchhHHhhhhchhhhh
Q 000498 85 GISEELLIAVLKILKKYLMDDSVQIVDMTSQTLRGILSTEKGQRAVMSFDSYERSLLEVHSKGVNVELVETFLLDLERKF 164 (1460)
Q Consensus 85 ~~~~~~~~~il~~l~~~l~~~~~~~~~~a~~~L~~ilst~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (1460)
++.++........+..+..+..+.+.+...++....+++-.+......++.|.+.+++++
T Consensus 1588 ~i~~~dk~~~~~~~~~~~~~~~~~~~~il~~t~~es~s~w~s~~~ls~f~~c~~~~~~~~-------------------- 1647 (2806)
T KOG0892|consen 1588 LIFPLDKITLDSFLKTLVSEEGSFIIDILQQTNNESLSNWLSEFALKLFNMCGRSSTTHS-------------------- 1647 (2806)
T ss_pred hccchhHHHHHHHHHHHhhccchhHHHHHhhhhccchhhHHHHHHHHHHHHHhccCCchh--------------------
Confidence 788888888899999999999999999999999999999888888777888877777632
Q ss_pred hcCCCCCCCCcccccCCCCHHhhHHHHHHHhhccCCchhhhhcHHHHhhcHhHHHHHhHHHHHHHhcCCCcchhHHHHHH
Q 000498 165 KANGISPEKSTVWETDGKTFETWICPLTYSLIGCCNDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGSKNVDVDLQKLIS 244 (1460)
Q Consensus 165 ~~~~~~~~~~~~w~~~~~s~~~Wi~~l~~~Ll~~~~~~~Lr~~~~l~~~~~~~A~~LlP~~v~~i~~~~d~~~~~~~~ls 244 (1460)
|.++......|++.++..+|-.+.+.. |..+....--+-+.++|.+..+
T Consensus 1648 ------------~st~~~~~~t~i~~~i~~~l~~~s~~~---~~~~~~~~~yi~~~~~~sl~~n---------------- 1696 (2806)
T KOG0892|consen 1648 ------------LSTYMANFSTSICQLIICLLLLESDFN---PGNNLKQKDYIFELILSSLLKN---------------- 1696 (2806)
T ss_pred ------------hccccccccHHHHHHHHHHHHhhcccc---HHHHHHHHHHHHHHHhhccccc----------------
Confidence 444445578999999988874333322 4445544444444444443311
Q ss_pred HHHHhhhhhcchhhhHHHHHHHHHHHHHhHhhHhhhccCCCCCcccccccccCCCCCCCccchhhhhhhhhhcccccccc
Q 000498 245 SQVQKYIFTESNKLIKSIQVFLNALNELRLCHVMERSSSVPPKRESSKYVKHSGSSAKPRSTSAKARDVVATSNATMTTS 324 (1460)
Q Consensus 245 ~~~~~~~~~~~~~~~~~iq~~l~~~~~Lr~~~~~er~~~~p~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 324 (1460)
.-....+-+|.+.++|.+ ++-.+ -+.
T Consensus 1697 -------------~~~~~~m~~ni~~~~~~~---~~~~~--------------------------------------~n~ 1722 (2806)
T KOG0892|consen 1697 -------------SNSIFKMDMNILKYLRRQ---LGCHA--------------------------------------FNP 1722 (2806)
T ss_pred -------------hhHHHHHHHHHHHHHHHh---hchhh--------------------------------------hcc
Confidence 011233455666666654 11100 023
Q ss_pred cccccccccCHHHHHHHHHHhchhhHHhhhhHhHhHHhhccccCCCCCCCcCCCcchHHHHHHHHHhhcCCchhhhhhhc
Q 000498 325 WDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ 404 (1460)
Q Consensus 325 ~~~~~wL~Id~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdEPD~~yGi~~ 404 (1460)
|...+|+++++...+-++.+|.+|-..++|.=+.-.+ ..+........+++|.++|+.|++||++||+..
T Consensus 1723 ~~~~~~~~~~~~~~~~~~~~~~~~e~s~~~~t~~~~k----------~k~~e~~~~~lqDil~~~y~~I~~pD~lyG~~~ 1792 (2806)
T KOG0892|consen 1723 FEIYYWLPIVYSVAASTAYDCLLFEYSLLSLTIHSPK----------NKRDELDITLLQDILKKAYESINCPDALYGIKR 1792 (2806)
T ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHHHHHhhcCcc----------cchhHHHHHHHHHHHHHHHhhCCCcchhcccCC
Confidence 4456689999999999999998888888777552110 111122334456777888999999999999998
Q ss_pred ccchh-hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhh
Q 000498 405 SHKLS-SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVG 483 (1460)
Q Consensus 405 ~~~l~-~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~lG 483 (1460)
...++ .+++.+||+++|.+||..||..-. .|+ + + ...|.+++|++.|
T Consensus 1793 ~~~~~~~~l~~~~he~~w~~aL~~~d~~~~------------------~~s-----s--~-------~~~~~~~sLq~~g 1840 (2806)
T KOG0892|consen 1793 PTSLKNLILITAEHEKNWPRALSYYDLADM------------------YPS-----S--E-------DEAGFINSLQNAG 1840 (2806)
T ss_pred cccccccccchhhhhhhHHHHHHhhcchhh------------------ccc-----h--H-------hHhHHHHHHHHhc
Confidence 77777 789999999999999999998653 133 0 1 2389999999999
Q ss_pred hhhHHHHhhhccccccCCCCCCcchhHHHHHHHHhcCCCCCcccccCCCCCCCcCcccchhhhhHHHHHHHHhcCChHHH
Q 000498 484 CMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEF 563 (1460)
Q Consensus 484 ~~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~~L~Al~~~d~~~~ 563 (1460)
+.|++.+|++|++... ..++++..+..|++|||+|+||...+++-+ .+...+..||..+|.+|+|+++++++++
T Consensus 1841 ~~~I~~~y~~Gl~~~~--~~~~~~~~e~~Ye~awr~g~Wd~~t~~~~~----~~~~~~~~y~e~~f~~l~al~ere~e~~ 1914 (2806)
T KOG0892|consen 1841 FFHILEFYIDGLKSND--KIDEPSNEELVYEAAWRLGKWDILTLSLVD----QNKTKGDYYHESLFEALRALHEREIEGS 1914 (2806)
T ss_pred chhHHHHHhcChhhhh--hhhhhhhhhhhHHHHHhcCCcccCCcchhh----hhhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999876 567788889999999999999986543211 1445677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhcc-CCccccccccccccCCCCCcchhhhhHHH
Q 000498 564 YRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSS-GESINIYPEKQKIVSEPVIPTVGQLSWLN 642 (1460)
Q Consensus 564 ~~~i~~aR~~l~~~Ls~~s~ES~~~~y~~lvrLq~L~ELe~i~el~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 642 (1460)
..+|+.+|...+..++..+.||....|+.+.+||.+.+||.+.++.+... ++..-....+.....++..+.....+.+.
T Consensus 1915 yl~le~a~~~~v~~i~~~see~~~~~y~~l~~L~~l~~l~~i~~l~~~~~~~~~~~~~~~k~~t~~q~~~~~~~~~~~~~ 1994 (2806)
T KOG0892|consen 1915 YLHLEDARNKKVLLINPNSEESSLSFYATLYDLQFLVTLEPIRCLQSTADKHQSNTDILQKWKTNLQLSSQLMECLSLLI 1994 (2806)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhhHhhhhhhcchhhhhHHHHHHHHHHhhccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999876322 00000000000000001111122233333
Q ss_pred HHHHHHHHhhhcchhhhhhhhHHHHHHHHhcccchHHHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhh
Q 000498 643 TEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYW 722 (1460)
Q Consensus 643 ~~W~~rl~~~~~~~~~~EpiL~~R~~vl~il~~~~~~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~ 722 (1460)
..|+..+...+.+...-++.++.+..++...++....+....+.+.+.++-.+ .+.+...+.+.++
T Consensus 1995 ~d~n~l~s~~~l~~~l~~~~~~~~~~~l~~~g~e~~~la~~~~~~~~~~~~~r--~~~~i~~~~~~~~------------ 2060 (2806)
T KOG0892|consen 1995 EDRNVLLSLLQLHKQLSESQLADLASLLKYYGLELCKLAESFLIADLLQNIAR--AFPVIMLSIKLLC------------ 2060 (2806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhchhhHHhHHH--hhHHHHHHHHHHh------------
Confidence 33333333333333333333333333333333333223332333333332222 1222233332222
Q ss_pred hHhHHHHHHHHHcCChHHHHHHH-------------HHHH-hhccCCCchhHHHHHHHHHHHHhhcCChHHHHHHhhhhh
Q 000498 723 LGRLEEAKLLRAQGQHEMAINLA-------------KYIS-ENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPA 788 (1460)
Q Consensus 723 ~a~lE~Ak~LWa~Ge~~~AI~~L-------------k~l~-~~~~~~~~~a~ll~llG~Wlaetr~e~~~~I~~~Y~~~a 788 (1460)
.++.|+..|+++....+-..| .... ++...+....++++.+|+|++|+++|++..|+++|+++|
T Consensus 2061 --~~s~aq~~~k~~~~~~~e~iL~~~~~kne~~~~~s~~~~~~~~lk~~~~~~~a~~g~Wlaetk~ens~~i~e~yl~~a 2138 (2806)
T KOG0892|consen 2061 --KFSLAQENLKHDIDKLSEAILWQRDEKNEAIISLSESLAKNNSLKEFPSDIYAVLGKWLAETKSENSALISEKYLEKA 2138 (2806)
T ss_pred --hhhhhhhhccchhhhhHHHHHHHHHhhhhHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHhhccchhhhHHHHHHHH
Confidence 233444444444332222222 2111 222223456889999999999999999999999999999
Q ss_pred hhcccccccch-hHHHHHhhhhhhhHHhhHHHHHhhHHHHhccHHHHHHHHHhhhhHHHHHHHHHHHhhcCccccchhhH
Q 000498 789 VSFSEDQRTTD-KKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSI 867 (1460)
Q Consensus 789 ~~l~~~~~~~~-~~~~~~~~~~~~~lA~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~y~~ 867 (1460)
+.+++.++... ++.......+++++|+|.|.+|+.+++|+.+.+|+.+++++++.+++++.+.++-....+ .
T Consensus 2139 ~~~ae~~d~e~~~~~~~~~s~a~~~~akysd~~~~~~~~~~~sse~et~~~l~k~~~~~~~~~~er~~q~~~-------~ 2211 (2806)
T KOG0892|consen 2139 VSLAEHYDNESCKALIYCQSFAQFCLAKYSDPDYQEDEERRSSSEFETLKDLQKLERSTVEASNEREEQMRK-------N 2211 (2806)
T ss_pred HHHhhhcchhHHHHHHhHHHHHHHHHHhccCchhhhHHHHHhHHHHhhHHHHHHHHHhhhhhhHHHHHHHHH-------H
Confidence 99888763322 222344568999999999999999999999999999999999999888876554322111 3
Q ss_pred HHHHHHHHHhhcHHHHHHhHhhHHHHHHHHHHHHHHHhhcCCccc---hhHHHHHHHhccchHHHHHHHHHhhccccccc
Q 000498 868 KIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYD---VFRLVSLWFSLSSRQNVIKNMVDTIDEVQSYK 944 (1460)
Q Consensus 868 ~~~~~~~~~~~D~~e~~~l~~~r~~fl~~Al~~Yl~sL~~~~~~d---v~RllsLWf~~~~~~~v~~~~~~~l~~iPs~k 944 (1460)
+..+.++++.+|+++++++..+|.+||.+|++||++|+..|++|| ++|+|+|||++++.+++++.|.+.+.+||+||
T Consensus 2212 ~~~~~~rq~~lDe~~l~~l~~~r~~fL~~Alt~Yl~cl~~~~~~D~~~i~R~cslWfsns~~~evn~~mk~~i~~ipsyK 2291 (2806)
T KOG0892|consen 2212 HHVRVQRQLILDEEELLALSEDRSKFLTLALTNYLNCLSESDEYDVDLIFRCCSLWFSNSHLKEVNNSLKHEIQTVPSYK 2291 (2806)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccccHHHHHHHhhhhccccchHHHHHHHHHHhccCCcch
Confidence 445678999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred hhhhhhhhhccccCCccccccccHHHHHHHHHHHHHHhCChhhhhHHhhcccCCc-hhhhhcccchhhhhhhHHHHHHHH
Q 000498 945 FIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDR-IKDKQRSRNSFVVDMDKKLAAENL 1023 (1460)
Q Consensus 945 fl~~lpQL~sRl~~~~~~~~~~~f~~~L~~Ll~~i~~~hP~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i 1023 (1460)
|+||++||+|||+. .++..||+.|..|+.+++++||||++|+|+++.+..+ .++..++|.+ ++.+|..+++.+
T Consensus 2292 Fip~~yQlAaRl~~----~~~~~fq~~L~~Li~r~~~dhPyhtly~L~~L~~~~rd~e~~n~sr~s--l~~~rki~a~l~ 2365 (2806)
T KOG0892|consen 2292 FIPLVYQLAARLGN----SENNSFQKSLTSLIYRVGRDHPYHTLYQLLSLVNAVRDNEDENRSRGS--IDRDRKIAAELD 2365 (2806)
T ss_pred hHHHHHHHHHHhcc----ccCchHHHHHHHHHHHHhccCchHHHHHHHHHHhcCcChhhhhhcccc--cchhHHHHHHHh
Confidence 99999999999994 2467899999999999999999999999999999877 5666777776 788999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccccc-ccchhh--hhhccccCcccccccccCCCCCCccCCCCcCcc
Q 000498 1024 LEELSSYHGAIIRQMKQMVDVYIKLAELETRREDTNKR-IQLPRE--IRCLRQLELVPVVTATVPIDCTCQYNEGSFPYF 1100 (1460)
Q Consensus 1024 l~~~~~~~~~~~~~~~~l~~~~~~la~~~~~~~~~~~~-~~l~~~--l~~l~~l~~~p~~t~~lp~~~~~~~~~~~~~~i 1100 (1460)
+.......+.++++++.+|++|+.+|+.++...+++.+ +.+|.. +.+..+++.+|+||+++++++++.| +++|+|
T Consensus 2366 ~~~v~~~~~~~v~~v~~lc~~yI~lAnl~~~q~~t~~k~v~~p~~~~~~K~~nl~~v~~pT~ev~v~~s~~~--~~~p~i 2443 (2806)
T KOG0892|consen 2366 LCDVNQGAGNMVRQLECLCEAYISLANLKTSQNDTTSKLVRLPGYQWFLKQLNLEGVPPPTMNVKVNDSGDY--GNIPTV 2443 (2806)
T ss_pred hhHhhccchhHHHHHHHHHHHHHHHhcCcccccchhhhhhcCccccHHHhhhhccCCCCCCCCccccCCccc--CCCceE
Confidence 99888889999999999999999999987766666665 566664 4455667889999999999887644 568999
Q ss_pred ccccceEEEecCCCcceEEEEEeCCCceEeeeeecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCC
Q 000498 1101 KGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTP 1180 (1460)
Q Consensus 1101 ~~f~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs~ 1180 (1460)
.+|.++|.+++|++.||+|+|+||||++|++|+|+|+||||||++|+|+|+++|++|.++++|++|+|.||||+||||+|
T Consensus 2444 ~s~~~~v~~~~GinaPkiI~c~gSDG~~~kqLVK~gnDDLRQDAVMeQvF~~vN~lL~~~~et~krkL~irTYKVvPls~ 2523 (2806)
T KOG0892|consen 2444 VSFDDTVTFAGGINAPKVITCVGSDGKTYKQLVKGGNDDLRQDAVMEQVFGQVNTFLQNDRETRKRKLSIRTYKVIPLSP 2523 (2806)
T ss_pred EecccceeeecCccCCeEEEEEccCchhHHHHHhcccchHHHHHHHHHHHHHHHHHhhccHHHHhcccceeEEeeeecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchH-----hHHHHHHHHHhhhhhhHHHHHHHHcC
Q 000498 1181 SAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVK-----DKRIAFQEVCENFRPVLHYFFLERFL 1255 (1460)
Q Consensus 1181 ~~GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-----~k~~~f~~i~~~~~pvl~~~f~~~f~ 1255 (1460)
++|+||||.||+|+++++.... +|+|+||+|+||++.+||+.|++++ +|+++|.+||.+|+||||+||+|+||
T Consensus 2524 ~sGvlEwv~~tiplgeyLv~~~--~gah~ry~p~d~s~~~crk~m~~~q~k~~E~r~k~y~~vc~n~~PvfryFflEkF~ 2601 (2806)
T KOG0892|consen 2524 KAGVLEWVTNTIPLGEYLVVES--GGAHKRYRPNDWSLSKCRKLMSEVQKKSLETRLKAYDKVCRNIRPVFRYFFLEKFP 2601 (2806)
T ss_pred ccceeecccCCeehhhhhcccC--CccccccCCCCCChHHHHHHHHHHhcccHHHHHHHHHHHHhhchHHHHHHHHHhcC
Confidence 9999999999999999997644 8999999999999999999998776 89999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccCCCCCCCCCcccchhhhhcccc
Q 000498 1256 QPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGV 1335 (1460)
Q Consensus 1256 ~~~~w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~ 1335 (1460)
+|.+||++|++||||+|+.|||||||||||||.+|||||..||+|||||||++||+|+.||+||+|||||||+||||||+
T Consensus 2602 dP~~WFekrlaYTrsvA~sS~VGyILGLGDRH~qNILid~~taEviHIDlGiAFEQGkilptPE~VPFRLTRDiVdgmGI 2681 (2806)
T KOG0892|consen 2602 DPADWFEKRLAYTRSVAASSMVGYILGLGDRHGQNILIDQQTAEVIHIDLGIAFEQGKILPTPETVPFRLTRDIVDGMGI 2681 (2806)
T ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHhcccchhhhheeecccccceEEEeeeeehhcCCcCCCCCcccceeehhhccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhHHHhhhhcccccccCCCCCCcccccc-chhHHHHH
Q 000498 1336 TGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEG-NKDAERAL 1414 (1460)
Q Consensus 1336 ~g~eG~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-n~~a~~~l 1414 (1460)
+||||+||+|||.||.+||++++.+++|||+|+||||++|.++|.|+..+|++ ++..+.+.++....... +..|.|++
T Consensus 2682 tGveGvFrRccE~t~~vlR~~~~~lltileVl~yDPLf~W~msplK~~~~q~~-e~~e~~n~~~~~~~~~~nd~~a~r~l 2760 (2806)
T KOG0892|consen 2682 TGVEGVFRRCCEFTLEVLRREKESLLTILEVLLYDPLFSWLMSPLKALKKQKE-EDEENFNLSGNITEDASNDRNAVRAL 2760 (2806)
T ss_pred cCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcchHHHhhcHHHHHHHHHh-hcchhcccccchhhhhccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999986 33333443333333333 57899999
Q ss_pred HHHHhhccCCCCCCCcCHHHHHHHHHHHhcCchhhhhhCcccccCC
Q 000498 1415 IRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1460 (1460)
Q Consensus 1415 ~rv~~KL~g~~~~~~lsv~~qV~~LI~~Atd~~nL~~m~~gW~Pwl 1460 (1460)
.|+++||.|++.|..+||++||++||||||||+|||+|||||.||+
T Consensus 2761 ~r~q~kl~g~e~g~~~sVe~qv~~LIqqA~dpsnLs~~fpGW~a~~ 2806 (2806)
T KOG0892|consen 2761 MRAQRKLDGVEQGTMLSVEAQVQELIQQATDPSNLSLMFPGWSAFQ 2806 (2806)
T ss_pred HHHHHHhhhhhccccccHHHHHHHHHHHhcCchhhhhhcCCCcCcC
Confidence 9999999999999999999999999999999999999999999996
No 2
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3e-155 Score=1497.61 Aligned_cols=1220 Identities=26% Similarity=0.398 Sum_probs=916.7
Q ss_pred hhHHHHHHHHHHhhcCCCcccHHHHHHHHHhhhCCCCCcEEEEecCCCccccccccCCCCCCCCCccceeccCccchHHH
Q 000498 11 HDIVHAVWTLVHMCCSDDASSIRAWVSDFISRVGIGDPHCVVFHLPRDSIYMHACRPINHGSGSATEFNFHLDAGISEEL 90 (1460)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (1460)
+++.+.+=.|..=|-... +.+..+.|+||+.+|.-||.|--|+--+. ++.. -...+--+.|.-|-. .
T Consensus 1080 ~~l~ql~~~Ll~gc~k~~-~~~~~~~akcLg~lgaidp~~~~~k~q~~---------i~~~--~~~~~~~~~~~~i~~-~ 1146 (2382)
T KOG0890|consen 1080 EDLSQLLTVLLDGCQKKT-SQLEELCAKCLGELGAIDPSCHRFKEQET---------IPSI--LQVLPIECSDLPIKF-I 1146 (2382)
T ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccCchhhhhhcccc---------cchh--hhccccccCchhhhh-H
Confidence 455566666666555544 78888999999999999999877765311 1111 122233333333334 4
Q ss_pred HHHHHHHHHHhhhcCcchhhchHHHHHHHHhccccccchhhchhHHHHHHHHHhhccCcchhHHhhhhchhhhh-hcCCC
Q 000498 91 LIAVLKILKKYLMDDSVQIVDMTSQTLRGILSTEKGQRAVMSFDSYERSLLEVHSKGVNVELVETFLLDLERKF-KANGI 169 (1460)
Q Consensus 91 ~~~il~~l~~~l~~~~~~~~~~a~~~L~~ilst~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 169 (1460)
.++...++.-+++..+..-.+.++.+.+.++. ..|..-....+.-.--+|+.+..-.-..+ .|.+++.+.. .....
T Consensus 1147 ~~~~~~l~~~~~~~~~~~~q~~~~~~~qe~l~-~~~~~n~e~~~~~~~elW~~Fp~~~k~~~--~P~L~s~Y~sq~~~p~ 1223 (2382)
T KOG0890|consen 1147 DFAWDTLVKAFLCEPDQLKQDVVAYAIQEVLV-LGGSSNIEPLDRGMCELWERFPNEVKEEM--EPTLTSRYASQKPEPS 1223 (2382)
T ss_pred HHHHHHHHHHHhcCcChhhhhHHHHHHHHHHH-HhccccCccCCccHHHHHHHhHHHHHHHH--hhcccchhccCCCCCC
Confidence 56677888889999999999999999888887 22222111222222223332211111111 3333333320 11111
Q ss_pred CCCCCcccccCCCCHHhhHHHHHHHhhcc---C-CchhhhhcHHHHhhcHhHHHHHhHHHHHHHhcCC--CcchhHHHHH
Q 000498 170 SPEKSTVWETDGKTFETWICPLTYSLIGC---C-NDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGSK--NVDVDLQKLI 243 (1460)
Q Consensus 170 ~~~~~~~w~~~~~s~~~Wi~~l~~~Ll~~---~-~~~~Lr~~~~l~~~~~~~A~~LlP~~v~~i~~~~--d~~~~~~~~l 243 (1460)
.-...+++... .+|.+|+.+|+..|+.. + .++++.+|+.+...+-.++.+|+||++++|+... +...++.+++
T Consensus 1224 ~~~k~Piy~~~-lg~~eW~~~w~~~Li~ka~~s~~~~ifs~cs~~~k~D~~~t~fLlP~ill~vll~~~~e~~~~V~~ei 1302 (2382)
T KOG0890|consen 1224 VGEKKPIYKSS-LGYREWLSRWSLKLIAKAESSEASPLFSLCSIIVKDDFKVTRFLLPYILLDVLLVCEEEDRNSVTEEI 1302 (2382)
T ss_pred ccccccccccc-ccHHHHHHHHHHHHHHhccccccchHHHHHHHHHhccchhHHHHHHHHHHHHHHhccHhhHHHHHHHH
Confidence 22234444433 33999999999999954 2 3589999999999999999999999999985432 2245566666
Q ss_pred HHHHHhhhhhcc-----hhhhHHHHHHHHHHHHHhHhhHhhhccCCCCCcccccccccCCC---CCCCccchhhhhhhhh
Q 000498 244 SSQVQKYIFTES-----NKLIKSIQVFLNALNELRLCHVMERSSSVPPKRESSKYVKHSGS---SAKPRSTSAKARDVVA 315 (1460)
Q Consensus 244 s~~~~~~~~~~~-----~~~~~~iq~~l~~~~~Lr~~~~~er~~~~p~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~ 315 (1460)
-.++++...+.- ....-.+|++|..++||..|-...+- .+- +..+.+...+| +.-+..+. -.++++
T Consensus 1303 l~vl~~~~~~t~ns~~~~~d~~~~~~VF~~ld~l~qw~r~~~q-~~~---~~k~~~sk~~R~~~~~~~~Tt~--~~~~~~ 1376 (2382)
T KOG0890|consen 1303 LSVLDEAATNTINSRGTASDRLCVQFVFYVLDYLYQWARHKKQ-ELA---EKKKIWSKVNRFWKSIMSWTTT--GEDIEG 1376 (2382)
T ss_pred HHHHhcccccccccccccccchhHHHHHHHHHHHHHHHHHHHH-HHH---HhhhhHHHhhhhheeeeccccC--CCchhh
Confidence 666665332211 12256899999999999766211111 000 00000111122 00000000 011111
Q ss_pred hcccccccccccccccccCHHHHHHHHHHhchhhHHhhhhHhHhHHhhccccCCCCCCCcCCCcchHHHHHHHHHhhcCC
Q 000498 316 TSNATMTTSWDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINE 395 (1460)
Q Consensus 316 ~~~~~~~~~~~~~~wL~Id~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdE 395 (1460)
+ ..|..-|+-.++|+|..+|++|++|+||+|.+ ++ .+.. .+...+..-+|+.+|..|+|
T Consensus 1377 v----------~~fL~~iP~~tLa~aSfrc~~y~RalmylEs~----~~------~ek~-~~~~e~l~fllq~lY~~i~d 1435 (2382)
T KOG0890|consen 1377 V----------QSFLDLIPSDTLARASFRCKAYARALMYLESH----RS------TEKE-KETEEALYFLLQNLYGSIHD 1435 (2382)
T ss_pred h----------HHHHhhccHHHHHHHHHhhHHHHHHHHHHHHh----cc------ccch-hHHHHHHHHHHHHHHHhcCC
Confidence 1 12455788999999999999999999999985 11 1111 11223445567779999999
Q ss_pred chhhhhhhc----ccchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccch
Q 000498 396 PDSLYGIIQ----SHKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKP 471 (1460)
Q Consensus 396 PD~~yGi~~----~~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~ 471 (1460)
|||+.|+.+ .+++..||..+|..|+|.+|.+|||..++.+ |+ +..+
T Consensus 1436 pDgV~Gv~~~r~a~~sl~~qil~~e~~g~~~da~~Cye~~~q~~-----------------p~-------------~~~~ 1485 (2382)
T KOG0890|consen 1436 PDGVEGVSARRFADPSLYQQILEHEASGNWADAAACYERLIQKD-----------------PD-------------KEKH 1485 (2382)
T ss_pred cchhhhHHHHhhcCccHHHHHHHHHhhccHHHHHHHHHHhhcCC-----------------Cc-------------cccc
Confidence 999999976 4689999999999999999999999999975 33 2346
Q ss_pred hhHHHHHHHhhhhhhHHHHhhhccccccCCCCCCcchhHHHHHHHHhcCCCCCcccccCCCCCCCcCcccchhhhh-HHH
Q 000498 472 YKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHEN-LHS 550 (1460)
Q Consensus 472 ~~GlmrcL~~lG~~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~~~~~~~~~~f~~~-L~~ 550 (1460)
+.|+++|+.+.|+..+.-...+|++.+.+ ++-.++..+..|||||+++||.++.+.. ......|... +++
T Consensus 1486 ~~g~l~sml~~~~l~t~i~~~dg~~~~~s--e~~~~~~s~~~eaaW~l~qwD~~e~~l~-------~~n~e~w~~~~~g~ 1556 (2382)
T KOG0890|consen 1486 HSGVLKSMLAIQHLSTEILHLDGLIINRS--EEVDELNSLGVEAAWRLSQWDLLESYLS-------DRNIEYWSVESIGK 1556 (2382)
T ss_pred hhhHHHhhhcccchhHHHhhhcchhhccC--HHHHHHHHHHHHHHhhhcchhhhhhhhh-------cccccchhHHHHHH
Confidence 78999999999999998888888877643 4456788889999999999999887532 1233455555 899
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHHhHHHHHHHhhhhccCCccccccccccccCC
Q 000498 551 CLTALREGDSEEFYRKLKHSKQELVLSVACASEE-STEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSE 629 (1460)
Q Consensus 551 ~L~Al~~~d~~~~~~~i~~aR~~l~~~Ls~~s~E-S~~~~y~~lvrLq~L~ELe~i~el~~~~~~~~~~~~~~~~~~~~~ 629 (1460)
++.+..++|.-.+++.|+.+|..++++|++++.| ||.++|+.+++||++.||+..++...+.+++ . +
T Consensus 1557 ~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~---------~---~ 1624 (2382)
T KOG0890|consen 1557 LLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYD---------E---D 1624 (2382)
T ss_pred HHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcc---------c---c
Confidence 9999999999999999999999999999999988 9999999999999999999999865443321 0 0
Q ss_pred CCCcchhhhhHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHhcc---cchHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 000498 630 PVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILS---CKDFTMQHLLESASTLRKGFRLSQAAAALHEL 706 (1460)
Q Consensus 630 ~~~~~~~~~~~l~~~W~~rl~~~~~~~~~~EpiL~~R~~vl~il~---~~~~~~~~wl~~a~laRkag~~~~A~~aL~~l 706 (1460)
.......|..|++++++.+...||||++|+.++++.. .++.++++|+++|++||++|+++.|+++|..+
T Consensus 1625 --------s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A 1696 (2382)
T KOG0890|consen 1625 --------SANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNA 1696 (2382)
T ss_pred --------ccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence 0112268999999999999999999999999998743 46789999999999999999999999999887
Q ss_pred hhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhc-cCC--------C-c----hhHHHHHHHHHHHHh
Q 000498 707 KFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY-ESN--------E-E----APDVYRLVGKWLAES 772 (1460)
Q Consensus 707 ~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~l~~~~-~~~--------~-~----~a~ll~llG~Wlaet 772 (1460)
+... .| .+.+|.||++|.+|+...|+..||..+.+. +.. . . ...+..++|+|+.++
T Consensus 1697 ~e~r-------~~---~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es 1766 (2382)
T KOG0890|consen 1697 KESR-------LP---EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEES 1766 (2382)
T ss_pred hhcc-------cc---hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHh
Confidence 6432 11 346999999999999999999999887543 321 0 0 135678999999999
Q ss_pred hcCChHHHHHHhhhhhhhcccccccchhHHHHHhhhhhhhHHhhHHHHHhhHHHHhccHHHHHHHHHhhhhHHHHHHHHH
Q 000498 773 RSSNSRIILENYLKPAVSFSEDQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIK 852 (1460)
Q Consensus 773 r~e~~~~I~~~Y~~~a~~l~~~~~~~~~~~~~~~~~~~~~lA~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~ 852 (1460)
......+|++.|.. +..+. .++.+.||++|+|+|..+.... .
T Consensus 1767 ~n~~s~~ilk~Y~~-~~ail-----------~ewe~~hy~l~~yy~kll~~~~----~---------------------- 1808 (2382)
T KOG0890|consen 1767 GNFESKDILKYYHD-AKAIL-----------PEWEDKHYHLGKYYDKLLEDYK----S---------------------- 1808 (2382)
T ss_pred cchhHHHHHHHHHH-HHHHc-----------ccccCceeeHHHHHHHHhhhhh----c----------------------
Confidence 99999999999987 54321 2246789999999998876421 0
Q ss_pred HHhhcCccccchhhHHHHHHHHHHhhcHHHHHHhHhhHHHHHHHHHHHHHHHhhcCCccc---hhHHHHHHHhccch---
Q 000498 853 RLKSSTKGEKTDYSIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYD---VFRLVSLWFSLSSR--- 926 (1460)
Q Consensus 853 ~~~~~~~~~~~~y~~~~~~~~~~~~~D~~e~~~l~~~r~~fl~~Al~~Yl~sL~~~~~~d---v~RllsLWf~~~~~--- 926 (1460)
.+.+++ +....|+. ++.+|.+++.+|+++. +||++||||+++..
T Consensus 1809 -----~~~E~~------------------------g~~~~~l~-~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~ 1858 (2382)
T KOG0890|consen 1809 -----NKMEKS------------------------GRVLSLLK-AIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISS 1858 (2382)
T ss_pred -----cccccc------------------------ccHHHHHH-HHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcc
Confidence 000100 11234778 9999999999999976 99999999997432
Q ss_pred ------H--------HHHHHHHHhhccccccchhhhhhhhhccccCCccccccccHHHHHHHHHHHHHHhCChhhhhHHh
Q 000498 927 ------Q--------NVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLL 992 (1460)
Q Consensus 927 ------~--------~v~~~~~~~l~~iPs~kfl~~lpQL~sRl~~~~~~~~~~~f~~~L~~Ll~~i~~~hP~~~l~~l~ 992 (1460)
. .++..+.+++..+|+|.|+++++||+|||||+++ .+..+|.++|.++..+||||+||++.
T Consensus 1859 ~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y~f~ta~sQLlSRicH~~~-----dV~~vl~~II~~l~~~YPqq~lW~~~ 1933 (2382)
T KOG0890|consen 1859 VEKAPRGEIVSKNLKLINSLIEEALEHLPTYQFYTAYSQLLSRICHPNQ-----DVARVLKHIIAKLVLAYPQQTLWQSA 1933 (2382)
T ss_pred cccCChhhhhhhhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 1 2455677899999999999999999999999864 34579999999999999999999999
Q ss_pred hcccCCchhhhhcccchhhhhhhHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhh
Q 000498 993 ALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELS---SYHGAIIRQMKQMVDVYIKLAELETRREDTNKRIQLPREIR 1069 (1460)
Q Consensus 993 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~---~~~~~~~~~~~~l~~~~~~la~~~~~~~~~~~~~~l~~~l~ 1069 (1460)
++.+|...+ |....+.||++.. .....++.+...+.+.++++++.+... +.+..++..+|+
T Consensus 1934 a~~kS~~p~--------------R~~R~keIL~k~~~~~~~~~~l~~da~~lTe~L~~lcn~~v~~--ss~~~sl~t~F~ 1997 (2382)
T KOG0890|consen 1934 ALSKSNVPS--------------RVERCKEILTKSRRQKPDYKKLLSDAYDLTEKLTNLCNKKVNS--SSKVLSLKTDFR 1997 (2382)
T ss_pred HHHhcccHH--------------HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhcCCCCc--ccccccHHHHHH
Confidence 999886532 2233445666432 345567778888999999999865432 445667777777
Q ss_pred hcccc-----Ccccccc---cccCCCCCC--ccC-----CCCcCccccccceEEEecCCCcceEEEEEeCCCceEeeeee
Q 000498 1070 CLRQL-----ELVPVVT---ATVPIDCTC--QYN-----EGSFPYFKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAK 1134 (1460)
Q Consensus 1070 ~l~~l-----~~~p~~t---~~lp~~~~~--~~~-----~~~~~~i~~f~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K 1134 (1460)
++... .++|+.. .++|+-+.. .+. ++..|+|.+|.+.|+|++|+++||+|+++||||+.|.+|||
T Consensus 1998 kl~~~~~~s~iliP~~~~M~ptlP~~~~~~~~h~~~~~f~~~~~~IsgF~d~V~Il~SLqKPKkI~l~GsDGk~Y~~lCK 2077 (2382)
T KOG0890|consen 1998 KLVMNRRFSDILIPLQSIMDPTLPLIDNNHATHSPFPPFQSHLPYISGFSDEVKILNSLQKPKKIKLRGSDGKIYPFLCK 2077 (2382)
T ss_pred HhccccChhhhhhhHhhhcccccccccCcccccCCCCCCCCcchhhhcchHHHHHHHhccCCeEEEEEcCCCCEeEEEeC
Confidence 44321 2455432 234432221 111 12346899999999999999999999999999999999999
Q ss_pred cCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceEEEcCCCCchHHHhhhhccCCCCCCCcCCC
Q 000498 1135 SGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIG 1214 (1460)
Q Consensus 1135 ~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~ 1214 (1460)
+ +||||+|+|+|+|..+||.+|+||.|+|||+|+||||+||||+.+|||||||||+.+|++|+.+.+...|. +.+.
T Consensus 2078 p-KDDLRKD~RlMeFn~lin~lL~KD~eSRrR~L~IRTYaViPLneeCGiIEWv~nt~slR~IL~klY~~rg~---~~~~ 2153 (2382)
T KOG0890|consen 2078 P-KDDLRKDARLMEFNELINKLLRKDQESRRRKLYIRTYAVIPLNEECGIIEWVPNTASLREILDKLYMTRGK---WMIK 2153 (2382)
T ss_pred c-hhhhhhhhHHHHHHHHHHHHHhhCHHHhhhcceeeEEEEeecCCccceEEecCCcchHHHHHHHHHHhccc---cchh
Confidence 6 79999999999999999999999999999999999999999999999999999999999999886633221 1111
Q ss_pred cchhHHHHhhh----cchHhHHHHHH-HHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCC
Q 000498 1215 DWSFLKCREHM----SNVKDKRIAFQ-EVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAM 1289 (1460)
Q Consensus 1215 ~~~~~~~~~~~----~~~~~k~~~f~-~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~ 1289 (1460)
.+++..+ ....++.++|. ++++++||||++||.++||+|..||..|.+|+||+||||||||||||||||++
T Consensus 2154 ----~~l~~~~~~~~~~~~~~~~~F~~~~lpkfPPVFheWFl~~FPeP~sW~~SR~~Y~rTtAVMSmVGyIlGLGDRHgE 2229 (2382)
T KOG0890|consen 2154 ----KQLRSVHLKKQMAKEEKGKVFREKLLPKFPPVFHEWFLESFPEPGSWFASRNNYARTTAVMSMVGYILGLGDRHGE 2229 (2382)
T ss_pred ----hHHHHhcCcHhhcccchhhhhHHhhcccCCcHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 1333222 12346788885 68999999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCCCeEEEeecchhhccccCCCCCCCCCcccchhhhhccccccccchhHHHHHHHHHHHhcChHHHHHHHHHHcc
Q 000498 1290 NILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIH 1369 (1460)
Q Consensus 1290 NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~ 1369 (1460)
|||||..||++||+||.|.|++|..|++||.||||||+||+|||||+|+||.||++||.||++||+|++.||+||+.|+|
T Consensus 2230 NILFDs~TGdcVHVDFnCLFnKGetlevPEiVPFRLT~NMidamGp~G~EG~Frk~cEiTLrLlR~n~e~LMSiL~tF~~ 2309 (2382)
T KOG0890|consen 2230 NILFDSTTGDCVHVDFNCLFNKGETLEVPELVPFRLTQNMIDAMGPLGLEGSFRKVCEITLRLLRKNRETLMSILETFVY 2309 (2382)
T ss_pred ceeeecCCCcEEEEeecccccCCcccCCCCccceecchhHHhhcCCcccchhHHHHHHHHHHHHHhcchhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccChhHHHhhhhcccccccCCCCCCccccccchhHHHHHHHHHhhccCCC--CCCCcCHHHHHHHHHHHhcCch
Q 000498 1370 DPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYE--GGEMRSVHGQVQQLIQDAIDPE 1447 (1460)
Q Consensus 1370 DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~rv~~KL~g~~--~~~~lsv~~qV~~LI~~Atd~~ 1447 (1460)
|||+.|........ . ...|.+ .+++.+|++||.|.. +|.++||+|||+.||++|||++
T Consensus 2310 DPlvew~~~~k~~s------------~-------~~i~e~-~~~i~~i~~rlqG~~~~~glPLSveGq~~~LI~eATsee 2369 (2382)
T KOG0890|consen 2310 DPLVEWNRPSKGRS------------P-------KKINED-RLVIGRIRGRLQGAMKVDGLPLSVEGQASSLIEEATSEE 2369 (2382)
T ss_pred CchhhccCcccCCC------------c-------Ccccch-HHHHhHHHHHHhccCcCCCCccchhhHHHHHHHHhcCHH
Confidence 99999975431100 0 011112 568999999999954 6788999999999999999999
Q ss_pred hhhhhCcccccCC
Q 000498 1448 RFCLMFPGWGAWL 1460 (1460)
Q Consensus 1448 nL~~m~~gW~Pwl 1460 (1460)
|||+||.||+|||
T Consensus 2370 nL~~MYIGW~p~l 2382 (2382)
T KOG0890|consen 2370 NLSEMYIGWMPFL 2382 (2382)
T ss_pred HHHHHHhhhhccC
Confidence 9999999999997
No 3
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=100.00 E-value=4.1e-98 Score=999.44 Aligned_cols=1083 Identities=25% Similarity=0.377 Sum_probs=794.9
Q ss_pred CCHHhhHHHHHHHhhccCCchhhhhcHHHHhhcHhHHHHHhHHHHHHHhcCCCcchhHHHHHHHHHHhhhhhcchhhhHH
Q 000498 182 KTFETWICPLTYSLIGCCNDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGSKNVDVDLQKLISSQVQKYIFTESNKLIKS 261 (1460)
Q Consensus 182 ~s~~~Wi~~l~~~Ll~~~~~~~Lr~~~~l~~~~~~~A~~LlP~~v~~i~~~~d~~~~~~~~ls~~~~~~~~~~~~~~~~~ 261 (1460)
..|.+|++.+.+.++++++++++|+|..++..+.++|+.+||+++.+||.+.+ .+.+..+...+..... .+ ..++.
T Consensus 1128 d~~~e~~~~~~i~~lk~~~s~~lr~~~~l~~~~~~l~r~~f~~~~~s~w~e~~--~~~q~~l~~~le~~~~-~~-~i~e~ 1203 (2341)
T KOG0891|consen 1128 DDWQEWIRRLSIELLKESPSHALRACSSLAQAYYPLARDLFNAAFVSCWTELD--SSYQNDLIKSLEIALS-SP-DIPEI 1203 (2341)
T ss_pred hcccchhhhhhHHHHHhcchhhHHHHHhhhhhccccchhhhhHHHHHHhhhcc--cchhhhhhhhHHHHHh-CC-ccHHH
Confidence 34999999999999999999999999999999999999999999999999874 5566666666665332 22 23388
Q ss_pred HHHHHHHHHHHhHhhHhhhccCCCCCcccccccccCCCCCCCccchhhhhhhhhhcccccccccccccccccCHHHHHHH
Q 000498 262 IQVFLNALNELRLCHVMERSSSVPPKRESSKYVKHSGSSAKPRSTSAKARDVVATSNATMTTSWDKVYWLSVDYLRVAKS 341 (1460)
Q Consensus 262 iq~~l~~~~~Lr~~~~~er~~~~p~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~wL~Id~~~lA~a 341 (1460)
+|+++|+ +|||+|. + + .|+|...+++..
T Consensus 1204 ~q~l~nl---------~ef~eh~------~-----------------------------------~--plpi~~~~L~~~ 1231 (2341)
T KOG0891|consen 1204 IQTLLNL---------AEFMEHD------D-----------------------------------K--PLPIPIKTLGLY 1231 (2341)
T ss_pred HHhhhhH---------HHHHHhc------c-----------------------------------c--CCCcchhhHHHH
Confidence 8888886 5666541 1 1 367777799999
Q ss_pred HHHhchhhHHhhhhHhHhHHhhccccCCCCCCCcCCCcchHHHHHHHHHhhcCCchhhhhhhcc----cchhhHHHHHHh
Q 000498 342 AVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS----HKLSSQIVTLEH 417 (1460)
Q Consensus 342 A~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdEPD~~yGi~~~----~~l~~~i~~yE~ 417 (1460)
|..|++|++||+|.|+++-.. ...++++.|+.|.+.++.+|.+-|+... ..+..+..|||+
T Consensus 1232 ~~~c~a~~~~l~y~el~~~~~---------------~~~~~i~sl~~~~~~~q~~~~a~~i~~~a~~~~~l~~~e~w~e~ 1296 (2341)
T KOG0891|consen 1232 AEKCRAYAKALHYKELEFLKE---------------PSPDTIESLISINNKLQQREAAIGVLKYAQQHSELQLKETWYEK 1296 (2341)
T ss_pred HHHHHHHHHHHHHHHHHhhhc---------------cchhHHHHHHhhcccchhHHHhccHHHHHHhHHHHHHhhhcccc
Confidence 999999999999999976442 2367799999999999999999999752 356778899999
Q ss_pred hCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhhhhhHHHHhhhcccc
Q 000498 418 EGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTS 497 (1460)
Q Consensus 418 eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~lG~~~~L~~~~~gl~~ 497 (1460)
..+|++||.+|+.....+.+ ..+...|.|+|+..+|.|+.+....+..|.
T Consensus 1297 l~~~~d~l~a~~~~~~~~~~------------------------------~~e~~~g~~~~~~~lg~w~~l~~~~~~~~~ 1346 (2341)
T KOG0891|consen 1297 LHRWEDALAAYELREKAGDS------------------------------SFELRMGKMRCLEALGDWDELSQLASEKWE 1346 (2341)
T ss_pred cccchhHhhhhhcccchhhh------------------------------hHHHHhhhhhhhhhhhhHHHHhhhhcccCC
Confidence 99999999999987664311 113457999999999999998755444444
Q ss_pred ccCCCCCCcchhHHHHHHHHhcCCCCCcccccCCCCCCCcCcccchhhhhHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 000498 498 WKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLS 577 (1460)
Q Consensus 498 ~~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~~L~Al~~~d~~~~~~~i~~aR~~l~~~ 577 (1460)
..+ .+.+..+++.+..+||.+++||.+.. +.+.++..+++..+| ++.+++|.++++.+...+..+|+.++.+
T Consensus 1347 ~~~-~~~~~~~ap~a~~~~~~~~~w~~~~~--~~s~~~~~~~~~~~~-----~a~~a~~~~~~~~~~~~~~~~~dll~~e 1418 (2341)
T KOG0891|consen 1347 VAG-QEAKHKMAPLAAAAAWGLGQWDTMAE--YVSVMSEDSQDKAFF-----RAILALHRDEFEKAVKLIERARDLLDTE 1418 (2341)
T ss_pred Ccc-hhHHHHHHHHHHHhhhccccchhhhh--hcccccccchhhHHH-----HHHHhhhhhHHHHHHHhcccHHHHHHHH
Confidence 332 23456788999999999999998665 355555555555555 4566999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHHHHHHHHHHhhhcchh
Q 000498 578 VACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMN 657 (1460)
Q Consensus 578 Ls~~s~ES~~~~y~~lvrLq~L~ELe~i~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~~~~~~~ 657 (1460)
++++..|||+++|..+++.||+.|+|++++ ++..+ ++...+...|.+++.+++...+
T Consensus 1419 ~~~~~~Es~sr~y~~~~~~~~~~e~E~~~~--~k~~~---------------------~r~~~i~~~~~~~l~~~q~~~~ 1475 (2341)
T KOG0891|consen 1419 LTAMAGESYNRAYGVMVRAQMLAELEEIIE--YKKLP---------------------ERRPIIAKTWWKRLQGCQKNVD 1475 (2341)
T ss_pred HHHHHhhHHhhchhhhhhhhhhhhHHHHHH--hhccc---------------------chhHHHHHHHHhhHHHhhccHH
Confidence 999999999999999999999999999998 43321 1345678899999999999999
Q ss_pred hhhhhhHHHHHHHHhcccchHHHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCC-----CCCCchhhhhHhHHHHHHH
Q 000498 658 LLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGP-----GDQCSTVYWLGRLEEAKLL 732 (1460)
Q Consensus 658 ~~EpiL~~R~~vl~il~~~~~~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~-----~~q~~~~~~~a~lE~Ak~L 732 (1460)
.|+.++.+|..++.+ .+...+|++++.+|||+|+..++.+.+..+..-.... .-...|.+ .+...+++
T Consensus 1476 ~wq~~lr~~~~v~~p----~~~~~~~ik~a~~cr~s~~~~l~~~~l~~~L~~~~~~~~~~~~~~~~P~~---v~a~~~~~ 1548 (2341)
T KOG0891|consen 1476 DWQRILRVRSLVLSP----QEDMEMWIKFASLCRKSGRLALARKLLNELLERDPSSDLPLPLKARLPQV---VYAYLKYL 1548 (2341)
T ss_pred HHHHHHHHhhhccCC----CcchHHHHHHHHHhHHhHHHHHHHHHHHHHHhcCccccccccccccChHH---HHHHHhHH
Confidence 999999999888664 4478899999999999999999999987765322111 11122333 36679999
Q ss_pred HHcCChHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHhhcCChHHHHHHhhhhhhhcccccccchhHHHHHhhhhhhh
Q 000498 733 RAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSEDQRTTDKKSIERQCQTHFH 812 (1460)
Q Consensus 733 Wa~Ge~~~AI~~Lk~l~~~~~~~~~~a~ll~llG~Wlaetr~e~~~~I~~~Y~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 812 (1460)
|+.+....|++.++...... .++.++.. .... .+... .+.
T Consensus 1549 ~~~~~~~~~~~~~~~~~s~l----------------~~d~~~~~-~~~~----------~~~~~----~~~--------- 1588 (2341)
T KOG0891|consen 1549 WATDSKDEAINTLQEFTSTL----------------NSDLGSDP-DELL----------SEPTE----AEK--------- 1588 (2341)
T ss_pred HhhccchHHHHHhHHHHHHH----------------HhhcCCCc-hhhh----------hcccc----hhh---------
Confidence 99999999999986554322 11111111 0000 00000 000
Q ss_pred HHhhHHHHHhhHHHHhccHHHHHHHHHhhhhHHHHHHHHHHHhhcCccccchhhHHHHHHHH---HHhhcHHHHH-----
Q 000498 813 LAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQK---QLAMDREEAQ----- 884 (1460)
Q Consensus 813 lA~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~y~~~~~~~~~---~~~~D~~e~~----- 884 (1460)
.+....+... +.+.++|+..... .....-+..++..+..++..++.||+++-.-... +... -++..
T Consensus 1589 --~~~~~l~a~~--~l~~~~w~~~~~~-s~~~~~~~~~L~~y~~at~~d~~~ykawh~~a~a~f~~V~~-l~~~~~~~~~ 1662 (2341)
T KOG0891|consen 1589 --QEYTKLLARC--FLKLGEWQQLLQD-SWRTSALDGILQSYLLATQFDRGWYKAWHQWALANFEVVQM-LKQVTKAKYA 1662 (2341)
T ss_pred --hHHHHHHHHH--HHhhccccccccC-CccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-hhhhhccccC
Confidence 0000000000 1233444332111 1222233334455556666777777765110000 0000 00000
Q ss_pred ---------------HhHhhHHHHHHHHHHHHHHHhhcCCc---cchhHHHHHHHhccchHHHHHHHHHhhccccccchh
Q 000498 885 ---------------KLLDDRDNFLGLALEGYKRCLVIGDK---YDVFRLVSLWFSLSSRQNVIKNMVDTIDEVQSYKFI 946 (1460)
Q Consensus 885 ---------------~l~~~r~~fl~~Al~~Yl~sL~~~~~---~dv~RllsLWf~~~~~~~v~~~~~~~l~~iPs~kfl 946 (1460)
.-...-..|+.+++++|++++..+.. +|+.|+++|||.+|++++|..++..++..+|.+.|+
T Consensus 1663 ~~~~~~~~~~~~~~~~~~~~~~~~~v~avk~ff~~~~~~~~s~lqdtlrl~~L~f~~g~~~~v~q~i~~~~~~~~i~~wl 1742 (2341)
T KOG0891|consen 1663 PGANIWNMPDYLGSNSDLMLIHHYAVPAVKGFFRSISLSPGSSLQDTLRLLTLWFDFGDNKDVYQALLEGINLIPIDTWL 1742 (2341)
T ss_pred CccccccchhhccCcCCccchHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCCCchHHHHHHhhhhHhhHHHHH
Confidence 00011235999999999999887554 559999999999999999999999999999999999
Q ss_pred hhhhhhhccccCCccccccccHHHHHHHHHHHHHHhCChhhhhHHhhcccCCchh---------hhhcccchhhhhhhHH
Q 000498 947 PLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRIK---------DKQRSRNSFVVDMDKK 1017 (1460)
Q Consensus 947 ~~lpQL~sRl~~~~~~~~~~~f~~~L~~Ll~~i~~~hP~~~l~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 1017 (1460)
+++|||++||..+. ....+.+..++..+++.||+++.|++.+..++.... ++.+.+.+.++.++..
T Consensus 1743 ~~ipqLiari~~~~-----~~~~~l~~~ll~dig~~~pqA~iy~ltvas~s~~~~r~~~a~~ile~m~~~~~~Lv~~a~l 1817 (2341)
T KOG0891|consen 1743 EVIPQLIARIHTPD-----QLVVQLVLQLLSDIGRAHPQALVYPLTVASKSKSVARQKAALSILEKMREHSPTLVRQARL 1817 (2341)
T ss_pred HhHHHHHHHHhccc-----hHHHHHHHHHHHHhhhcchhhhhHHHHHHHhcchHHHHHhHHHHHHHHHHhhHhhhhhhhh
Confidence 99999999999763 456789999999999999999999999977765321 2233444445555554
Q ss_pred HHHHHHH-------------HHHH-hHHHHHHHHHHHHHHHHHHHHhhhhccc---------------------------
Q 000498 1018 LAAENLL-------------EELS-SYHGAIIRQMKQMVDVYIKLAELETRRE--------------------------- 1056 (1460)
Q Consensus 1018 ~~~~~il-------------~~~~-~~~~~~~~~~~~l~~~~~~la~~~~~~~--------------------------- 1056 (1460)
++-+.|. ++.+ .+++ .++++.+.+.+..+.++.....
T Consensus 1818 vs~elir~a~lwhe~w~e~ldeAsr~yf~--~~nv~~m~~~l~p~~~~l~~~~~t~~e~sFqqt~g~dl~ea~~~~~~~~ 1895 (2341)
T KOG0891|consen 1818 VSEELIRVAILWHEQWHEGLEEASRLYFS--DHNVEGMFAVLRPLHEMLERGPQTLKEHSFQQTYGRDLKEAYEWVQKFE 1895 (2341)
T ss_pred hHHHHHHHHhhhHhhhhhccHHHHHHHhh--HhhHHHHHHHHhHHHHHhhcCCcchhhhhhHHhhChhhHHHHHHHHHHH
Confidence 4444432 2222 2333 4566666666665554321110
Q ss_pred ------ccccccc--------chhhhhhccccCccccc-----ccccCCCCCCccCCCC-cCccccccceEEEecCCCcc
Q 000498 1057 ------DTNKRIQ--------LPREIRCLRQLELVPVV-----TATVPIDCTCQYNEGS-FPYFKGLAESVMVMNGINAP 1116 (1460)
Q Consensus 1057 ------~~~~~~~--------l~~~l~~l~~l~~~p~~-----t~~lp~~~~~~~~~~~-~~~i~~f~~~v~v~~s~~~P 1116 (1460)
+.++.|. +.+.+..++.++...+. ...+++..++.|.++. +..|.+|.+++.|++++++|
T Consensus 1896 ~~~~~~dL~qawdly~~vf~ki~~ql~~l~sl~l~~vSp~L~~~~dlel~vPgty~~~~~~i~i~~f~~~~~vitskqRp 1975 (2341)
T KOG0891|consen 1896 QSGDVKDLNQAWDIYYNVFKKIRKQLPQLTSLDLQYVSPKLLSAKDLELAVPGTYDPGKPIIRIQSFEPKFNVITSKQRP 1975 (2341)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccccccccceeccCCccCCCceEEehhhccHHHHHHHHHhhh
Confidence 0112221 22333444555544442 3355666667776652 34799999999999999999
Q ss_pred eEEEEEeCCCceEeeeeecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceEEEcCCCCchHH
Q 000498 1117 KVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGD 1196 (1460)
Q Consensus 1117 k~i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~ 1196 (1460)
+++.|+||||+.|.|++| |++|+|||+|+||+|++||.++..+.+|.||+|.|.+|.|+|+++++|+|+||||+.+++.
T Consensus 1976 rkl~i~gs~g~d~~~~lk-ghed~rQD~RvmQLf~Lvn~ll~~d~~~~rr~L~iq~Y~~i~ls~~sgL~gWv~~~dtlh~ 2054 (2341)
T KOG0891|consen 1976 RKLVIRGSDGKDYQYLLK-GHEDLRQDERVMQLFGLVNTLLANDSETFRRNLTIQRYSVIPLSPDSGLIGWVPNCDTLHT 2054 (2341)
T ss_pred HHHhhcccchhhHHHHhh-chhhhhhHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhcCCCCCCceeeeecccccHHH
Confidence 999999999999999999 7899999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhhhccCCCCCCCcCCCcchhHHH---HhhhcchHhHHHHHHHHHhhhhh-hHHHHHHHHcCCchHHHHHHHHHHHhhh
Q 000498 1197 YLIGSTRNGGAHGRYGIGDWSFLKC---REHMSNVKDKRIAFQEVCENFRP-VLHYFFLERFLQPAYWFEKRLAYTRSVA 1272 (1460)
Q Consensus 1197 il~~~~~~~~~~~r~~~~~~~~~~~---~~~~~~~~~k~~~f~~i~~~~~p-vl~~~f~~~f~~~~~w~~~R~~ft~S~A 1272 (1460)
.+......... ......+...+. ... -...+|...|......... .+++-++-..++++.|+.+|.+||+|.|
T Consensus 2055 L~r~~r~~k~i--~l~~eh~~~~~~~l~~~~-ltl~qk~~vfe~~~~~t~G~dl~~~lwlkS~ssEaw~~rrt~yt~S~A 2131 (2341)
T KOG0891|consen 2055 LIREYREKKKI--PLNIEHRVMLQMAPDYDH-LTLMQKVEVFEYALSNTQGDDLYKVLWLKSPSSEAWLDRRTNYTRSLA 2131 (2341)
T ss_pred HHHHHHHhhcc--CCcchHHHHHhcCccccc-hhhhhHHhHhHHHhhcCcHHHHHHHHHHhCCChhHHHHHhhhhHHHHH
Confidence 77543221100 000001111000 000 0123567778776666655 6778888899999999999999999999
Q ss_pred ccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccC-CCCCCCCCcccchhhhhccccccccchhHHHHHHHHH
Q 000498 1273 ASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLS 1351 (1460)
Q Consensus 1273 ~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~-l~~pE~VPFRLTrniv~~mG~~g~eG~Fr~~~~~t~~ 1351 (1460)
+|||+|||+|+|||||+|.|+|+.||+++|||||.||+..+. .++||.+||||||+++++|.++|.+|.|+..|+.+++
T Consensus 2132 ~msmvgyilGlGdrhpsNlmldr~tgkvihidfgdcfevA~~rek~pe~~pfRlTrmli~amev~gl~g~~~~t~e~v~~ 2211 (2341)
T KOG0891|consen 2132 VMSMVGYILGLGDRHPSNLMLDRLTGKVIHIDFGDCFEVAMLREKFPEKVPFRLTRMLINAMEVTGIEGTYRITCEHVMR 2211 (2341)
T ss_pred HHHHHHHHhhccccchhhhhhhhcccceEEechHHHHHHHHhhccccccccHHHHHHHHHhHHHHhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999986 5689999999999999999999999999999999999
Q ss_pred HHhcChHHHHHHHHHHccCCCcccccChhHHHhhhhcc---c----------------ccccCCCCCCccccccchhHHH
Q 000498 1352 VMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEM---D----------------DDLETGLEGPEDEYEGNKDAER 1412 (1460)
Q Consensus 1352 ~Lr~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~---~----------------~~~~~~~~~~~~~~~~n~~a~~ 1412 (1460)
++|.+++.++.++++|+|||+++|........++.... . .+.....+........|..+.-
T Consensus 2212 ~lr~~~~sl~a~leafvydplinwr~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~~~~~~~~~e~~n~~~~~ 2291 (2341)
T KOG0891|consen 2212 VLRTNKESLMAVLEAFVYDPLINWRLDDVLSPGKDEEEVGEKDPLKNRKELGLPRAMAGEEIAVLESSVKPEALNARAIQ 2291 (2341)
T ss_pred hhcCChHHHHHHHHhhhcccchhhhcccccchhhhhcccCCCCcccchhhhccHHhhhccccccccccccccccChhhHH
Confidence 99999999999999999999999998633222111100 0 0000000001111122555677
Q ss_pred HHHHHHhhccCCC--CCCCcCHHHHHHHHHHHhcCchhhhhhCcccccCC
Q 000498 1413 ALIRVKQKLDGYE--GGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1460 (1460)
Q Consensus 1413 ~l~rv~~KL~g~~--~~~~lsv~~qV~~LI~~Atd~~nL~~m~~gW~Pwl 1460 (1460)
++.|+..|+.|.+ ....++|..||..||+|||+|+|||+.|+||||+|
T Consensus 2292 vl~~~~~kltg~~~~~~~~l~v~~qv~~l~~qats~e~lc~~yigwcpfw 2341 (2341)
T KOG0891|consen 2292 VLKRISDKLTGRDFVHEEPLDVPEQVEKLIQQATSPENLCQCYIGWCPFW 2341 (2341)
T ss_pred HHHhcccccceeeccCcccCcHHHHHHHHHHhhcChHhhhcccccCCCCC
Confidence 8999999999954 34579999999999999999999999999999954
No 4
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=100.00 E-value=3e-76 Score=812.82 Aligned_cols=1073 Identities=21% Similarity=0.252 Sum_probs=664.7
Q ss_pred CHHhhHHHHHHHhhccCCchhhhhcHHHHhhcHhHHHHHhHHHHHHHhcCCCcchhHHHHHHHHHHhhhhhcchhhhHHH
Q 000498 183 TFETWICPLTYSLIGCCNDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGSKNVDVDLQKLISSQVQKYIFTESNKLIKSI 262 (1460)
Q Consensus 183 s~~~Wi~~l~~~Ll~~~~~~~Lr~~~~l~~~~~~~A~~LlP~~v~~i~~~~d~~~~~~~~ls~~~~~~~~~~~~~~~~~i 262 (1460)
.|.+|+..+.++++.+.+...++.|.-++...-..+..++..++..||.++-. ...+.+-..+.. ....+..++...
T Consensus 921 ~~q~~~~~~~~~~~~~~~~~~l~~~s~l~~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~~s~~~-~~~~~~~~~~~~ 997 (2105)
T COG5032 921 FWQEELDNLLVALLKELPFMALRDCSILSDLYFMLGRELWNSVSFECWLELMN--SYKRLLIKSLKS-KLHLPTIPILIL 997 (2105)
T ss_pred HHHHHHHHHHHHHHhccchHHhhhcchhHHHHhhccHHHHhHHhHHHHHHHhh--hhhHHHHHhHHH-HhhcCCCCchhh
Confidence 39999999999999888999999999999999999999999999999987521 111111111111 122233344444
Q ss_pred HHHHHHHHHHhHhhHhhhccCCCCCcccccccccCCCCCCCccchhhhhhhhhhcccccccccccccccccCHHHHHHHH
Q 000498 263 QVFLNALNELRLCHVMERSSSVPPKRESSKYVKHSGSSAKPRSTSAKARDVVATSNATMTTSWDKVYWLSVDYLRVAKSA 342 (1460)
Q Consensus 263 q~~l~~~~~Lr~~~~~er~~~~p~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~wL~Id~~~lA~aA 342 (1460)
+..+...+ .+|++.+ ..+++.++...+...+
T Consensus 998 ~~~~~~~n------~~e~~~~-------------------------------------------~~~~~~~~~~~~~~~~ 1028 (2105)
T COG5032 998 QMLLDSKN------LTEFTEH-------------------------------------------QLKNLPLPSLSIGFYE 1028 (2105)
T ss_pred hhhhhhcc------hhhhhhh-------------------------------------------hhheecchhhhhhHHH
Confidence 44442211 1333322 2336677777777999
Q ss_pred HHhchhhHHhhhhHhHhHHhhccccCCCCCCCcCCCcchHHHHHHHHHhhcCCchhhhhhhccc----chhhHHHHHHhh
Q 000498 343 VICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH----KLSSQIVTLEHE 418 (1460)
Q Consensus 343 ~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdEPD~~yGi~~~~----~l~~~i~~yE~e 418 (1460)
-.|+.++++++|.|.+.-+. . .-..++.++++..++.+.|..-|+.... .....-.++++.
T Consensus 1029 ~~~~~~~~~~~~~~~~~~~~---------~------~~~si~t~ls~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 1093 (2105)
T COG5032 1029 SLCSFLAKLLHDEELYFFPL---------L------FVSSLETLLSVNYHINQLDLRPNILKHFGSFVRFQLKPHLVKYL 1093 (2105)
T ss_pred HHHHHHHHHhHHHHHHhccc---------c------hHHHHHHHHhhhhhhhhhhhccCcchhhhhhhHHhhhHHHHHHH
Confidence 99999999999999843221 0 1245788999999999999999954422 233346899999
Q ss_pred CCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhhhhhHHHHhhhccccc
Q 000498 419 GNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSW 498 (1460)
Q Consensus 419 g~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~lG~~~~L~~~~~gl~~~ 498 (1460)
++|.+++..|-....... + ......|.+++....|.|.......+--+-
T Consensus 1094 ~~~~~~l~~~~~~~~~~~--------~----------------------~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~- 1142 (2105)
T COG5032 1094 QRWYEALNRYFELLSKGD--------R----------------------LFAISFTKLRNVDALGKLELYSSLAEIDMF- 1142 (2105)
T ss_pred HHHHHHHHHHHHHHhhcc--------c----------------------hhHHHHhhhhhhhHHHHHHHHHHHHHHhhh-
Confidence 999999999988766420 0 111346889999999988775443332111
Q ss_pred cCCCCCCcchhHHHHHHHHhcCCCCCcccccCCCCCCCcCcccchhhhhHHHHHHHHhcCChHHHHHHH-HHHHHHHHHH
Q 000498 499 KGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKL-KHSKQELVLS 577 (1460)
Q Consensus 499 ~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~~L~Al~~~d~~~~~~~i-~~aR~~l~~~ 577 (1460)
.+.+..+.-..++.+.++|.+|.|+....+- +.+.....+..++.. ......+.++.+.+.... -.++..++.+
T Consensus 1143 ~~~~~~r~~~~~~~~~~~~~~~~~~~~q~~~--e~~~~k~~~~~~~~s---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 1217 (2105)
T COG5032 1143 LSLHRRRKLLETLVATAYEQVGEWYKAQQLY--EVAQRKARSKEFPFS---LQYLYWHINDIDCADKLQSVLAELSLVTG 1217 (2105)
T ss_pred hccCcchhhhhHHHHHHHHHHHhHHHHHHHH--HHHhhhcccccCchh---hHHHHHcccchhhHhhhhhhhhhcccccc
Confidence 1112223335567788999999999754321 112222333333332 245678889999998888 6677888888
Q ss_pred hhhh-hhhhHHHHHHHHHHHHHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHHHHHHHHHHh---hh
Q 000498 578 VACA-SEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKR---TQ 653 (1460)
Q Consensus 578 Ls~~-s~ES~~~~y~~lvrLq~L~ELe~i~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~---~~ 653 (1460)
+... ..+++.+++-...+.+...|+++++...++...+ . . .-.-...+.+.|..++.+ ++
T Consensus 1218 ~~~i~~~~~w~~a~~~~~~~~~~~~~~e~~~~~~~~~~~-------~------~---~~~~~~~~~~~~~~~l~~~~~~~ 1281 (2105)
T COG5032 1218 ISELLLEESWRRALFSNIKDSLESELEEIIDGMYKSNED-------F------G---ALMLLSLSAELWDKILEGRSSCS 1281 (2105)
T ss_pred hhhhccchhHHHHHhhhHHhhhhhhhhHHhhhhhhcccc-------h------H---HHHHHHHHHhccchhhcchhhhh
Confidence 8887 6789999998889999999999998854443321 0 0 000123355688888887 66
Q ss_pred cchhhhhhhhHHHHHHHHhcccchHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhhcC-CC---C---CCCchhhhhHh
Q 000498 654 LHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGF-RLSQAAAALHELKFLYT-GP---G---DQCSTVYWLGR 725 (1460)
Q Consensus 654 ~~~~~~EpiL~~R~~vl~il~~~~~~~~~wl~~a~laRkag-~~~~A~~aL~~l~~l~~-~~---~---~q~~~~~~~a~ 725 (1460)
..+..+-.....+..+.. ..+ ..++|++++..|++.+ +.......+..+..-.. .. . ...++.. .
T Consensus 1282 ~~i~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~ 1354 (2105)
T COG5032 1282 KSIKLSLNIWLDLSIVVS---PKD-EPELFIKFVELCEASSIRSKLLEKNIQELLEKLEEIKSPLGTLRDRLPPPW---A 1354 (2105)
T ss_pred HHHHHHHHHHHHHhhhcC---Hhh-hhhHHHHHHHHHhhhhHHHHhcchhHHHHHhccccccchhhhhhhcCCCCc---h
Confidence 666655554444433322 222 3379999999999999 55556555555432111 00 0 0001111 1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHhhcCChHHHHHHhhhhhhhcccccccchhHHHHH
Q 000498 726 LEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSEDQRTTDKKSIER 805 (1460)
Q Consensus 726 lE~Ak~LWa~Ge~~~AI~~Lk~l~~~~~~~~~~a~ll~llG~Wlaetr~e~~~~I~~~Y~~~a~~l~~~~~~~~~~~~~~ 805 (1460)
+..-+..|+......+....+.+....... ...........-.+-..++....+ .++....
T Consensus 1355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------- 1415 (2105)
T COG5032 1355 LLDLKRLLATWRQNAFLRINPELLPLLSSL-LNLQSSSLSKQLVSRGSSESAISI--NSFASVA---------------- 1415 (2105)
T ss_pred hhhhhhhhhHHHHhhhhhhchhhccccchh-hhccchhccccccccchhhhhHHH--HHHHHHH----------------
Confidence 233444454444433333222211100000 000000000000000001111111 1111000
Q ss_pred hhhhhhhHHhhHHHHHhhHHHHhccHHHHHHHHHhhhhHHHHHHHHHHHhhcCccccchhhHHHHH-----HHHHHhhcH
Q 000498 806 QCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQE-----LQKQLAMDR 880 (1460)
Q Consensus 806 ~~~~~~~lA~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~y~~~~~~-----~~~~~~~D~ 880 (1460)
+.++ . +.+.|.+..++......+-. ++..+......++.+|++.... .+---.+..
T Consensus 1416 --~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1476 (2105)
T COG5032 1416 --RKHF-----L-----------PDNQLKKIYQLSNILISEAF-LLLRYLLLCRLGRRELKAGLNVWNLTNLELFSDIQE 1476 (2105)
T ss_pred --HHhc-----C-----------cHHHHHHHhhhhhhhcchHH-HHHHHHHHHHhhhHHHHHHHHhhcccchhHHHHHHH
Confidence 0000 0 00001100000000000000 0000000000011111111000 000000000
Q ss_pred HHHH-HhHhhHHHHHHHHHHHHHHHhhcCCc---cchhHHHHHHHhccchHHHHHHHHHhhccccccc-hhhhhhhhhcc
Q 000498 881 EEAQ-KLLDDRDNFLGLALEGYKRCLVIGDK---YDVFRLVSLWFSLSSRQNVIKNMVDTIDEVQSYK-FIPLVYQIASR 955 (1460)
Q Consensus 881 ~e~~-~l~~~r~~fl~~Al~~Yl~sL~~~~~---~dv~RllsLWf~~~~~~~v~~~~~~~l~~iPs~k-fl~~lpQL~sR 955 (1460)
.+.. ........+..++++..+.+...+.. .+.+|.+.+|+..+....+.+....+.......+ |++.+||+..+
T Consensus 1477 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1556 (2105)
T COG5032 1477 SEFFEWGKNLKLLSIIPPIEEIFLSNALSCYLQVKDLLKKLNLFELLGSLLSAKDAAGSYYKNFHIFDLEISVIPFIPQL 1556 (2105)
T ss_pred HHHHHhhhhhHHhccCCchhHHHHhhhccchHHHHHHHHhhHHHHHhhhhhhHHHHHHhhhhhcccccccccccchhhhh
Confidence 0000 11112234445566666666666544 3499999999999887667777777776666665 88878888887
Q ss_pred ccCCccccccccHHHHHHHHHHHHHHhCChhhhhHHhhcccCCch---------hhhhcccchhhhhhhHHHHHH-----
Q 000498 956 MGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRI---------KDKQRSRNSFVVDMDKKLAAE----- 1021 (1460)
Q Consensus 956 l~~~~~~~~~~~f~~~L~~Ll~~i~~~hP~~~l~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~----- 1021 (1460)
+..... .-...+..++.++++.||++..+++.+..++... ..+.+.+....+........+
T Consensus 1557 ~~~l~~-----~~~~~~~~~l~~~~~~~~~a~~~~L~~~~~s~~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~E~~~~~ 1631 (2105)
T COG5032 1557 LSSLSL-----LDLNSAQSLLSKIGKEHPQALVFTLRSAIESTALSKESVALSLENKSRTHDPSLVKEALELSDENIRIA 1631 (2105)
T ss_pred hhhcch-----hHHHHHHHHHHhhhhhchhhhhhhhhHHHHHhhhhhHhHHHHHhhhhhcCChhhHhHHHhhhhhhhhhh
Confidence 775421 2235688999999999999999999865443211 111122211111111111111
Q ss_pred -------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHhh---hh------------------------------cc
Q 000498 1022 -------------NLLEELSSYHGAIIRQMKQMVDVYIKLAEL---ET------------------------------RR 1055 (1460)
Q Consensus 1022 -------------~il~~~~~~~~~~~~~~~~l~~~~~~la~~---~~------------------------------~~ 1055 (1460)
.++.+++....+ +.........+... .+ ..
T Consensus 1632 ~~l~~~~~~~~l~q~~~r~~~~~~~----i~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~D~ 1707 (2105)
T COG5032 1632 YPLLHLLFEPILAQLLSRLSSENNK----ISVALLIDKPLHEERENFPSGLSLSSFQSSFLKELIKKSPRKIRKKFKIDI 1707 (2105)
T ss_pred hhhhhhhHHHHHHHHHHHhcccchH----HHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHhhhHHHHHHHHHhhh
Confidence 111111100000 00000000000000 00 00
Q ss_pred cccccccc--------chhhhhhcccc---Ccccc----cccccCCCCCCccCCC-CcCccccccceEEEecC-CCcceE
Q 000498 1056 EDTNKRIQ--------LPREIRCLRQL---ELVPV----VTATVPIDCTCQYNEG-SFPYFKGLAESVMVMNG-INAPKV 1118 (1460)
Q Consensus 1056 ~~~~~~~~--------l~~~l~~l~~l---~~~p~----~t~~lp~~~~~~~~~~-~~~~i~~f~~~v~v~~s-~~~Pk~ 1118 (1460)
...+..+. +++.+.++... ..-|. +. ...+..+++|..+ ++|.|.+|.|++.++.| .++|++
T Consensus 1708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~P~~~~~~k~~v~I~~f~p~~~~~~~~~~~p~r 1786 (2105)
T COG5032 1708 SLLNLSRKLYISVLRSIRKRLKRLLELRLKKVSPKLLLFHA-FLEIKLPGQYLLDKPFVLIERFEPEVSVVKSHLQRPRR 1786 (2105)
T ss_pred hhhhhhHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHhccc-cccccCCcccccCCCCceEEEecCceeeeecccccceE
Confidence 00000000 01111110000 00111 01 0112222344433 57899999999999987 999999
Q ss_pred EEEEeCCCceEeeeeecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceEEEcCCCCchHHHh
Q 000498 1119 VECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYL 1198 (1460)
Q Consensus 1119 i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~il 1198 (1460)
++++|+||+.|++++|+ +||+|||++|||++++||++|+++++|+||++.|++|+|||+||++|+||||||++||+.|+
T Consensus 1787 l~~rgsdG~~y~~i~K~-~dDlRQD~~~~Ql~~l~n~iL~~~~~~~~R~l~i~~Y~Vipls~~~GiIe~vpn~~tl~sI~ 1865 (2105)
T COG5032 1787 LTIRGSDGKLYSFIVKG-GDDLRQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVIPLSPGSGIIEWVPNSDTLHSIL 1865 (2105)
T ss_pred EEEEecCCcEEEEEeec-CccchHHHHHHHHHHHHHHHHHhChHhhhcCccceeeeeEeccCCcceEEEecCcchHHHHH
Confidence 99999999999999995 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCCcCCCcchhHHHHh-----hhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhc
Q 000498 1199 IGSTRNGGAHGRYGIGDWSFLKCRE-----HMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAA 1273 (1460)
Q Consensus 1199 ~~~~~~~~~~~r~~~~~~~~~~~~~-----~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~ 1273 (1460)
....+ ++++. ...+.+ .......|.+.|...+.+++|+|++||++.|++|.+|+.+|+||++|+|+
T Consensus 1866 ~~~~~------~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~f~~~~~w~~aR~Ny~~SlA~ 1936 (2105)
T COG5032 1866 REYHK------RKNIS---IDQEKKLAARLDNLKLLLKDEFFTKATLKSPPVLYDWFSESFPNPEDWLTARTNFARSLAV 1936 (2105)
T ss_pred HHHhh------hcCCC---hhHHhhhhhhhhhhcccchhHHhhhhhcCCCchHHHHHHHhcCChhhHHHHHHHHHHHHHH
Confidence 76443 22221 222221 11122346778888888888999999999999999999999999999999
Q ss_pred cchhhheeccCCCCCCeeEEecCCCeEEEeecchhhc-cccCCCCCCCCCcccchhhhhccccccccchhHHHHHHHHHH
Q 000498 1274 SSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFE-QGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSV 1352 (1460)
Q Consensus 1274 ~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~-~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~Fr~~~~~t~~~ 1352 (1460)
|||+|||||+|||||+|||||+.||+++|||||++|+ +|+.+++||.|||||||||+++||++|+||.||.+|+.++++
T Consensus 1937 ySvigYiLglgDRH~~NIliD~~sG~viHiDFg~il~~~p~~~~~pE~vPFrLT~~iv~~mg~~g~EG~Fr~~c~~~~~~ 2016 (2105)
T COG5032 1937 YSVIGYILGLGDRHPGNILIDRSSGHVIHIDFGFILFNAPGRFPFPEKVPFRLTRNIVEAMGVSGVEGSFRELCETAFRA 2016 (2105)
T ss_pred HHHHHHHccCCCcCCceEEEEcCCCcEEEehHHHHHhcCCCCCCCcccCcHhhhHHHHHhcCccchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999977766 566799999999999999999999999999999999999999
Q ss_pred HhcChHHHHHHHHHHccCCCcccccChhHHHhhhhcccccccCCCCCCccccccchhHHHHHHHHHhhccCCCC--CCCc
Q 000498 1353 MRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEG--GEMR 1430 (1460)
Q Consensus 1353 Lr~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~rv~~KL~g~~~--~~~l 1430 (1460)
||++.+.|++++++|++|||++|...|- . ....|.++..+.+|+..|+.|.+. ...+
T Consensus 2017 LRk~~~~L~~~le~f~~d~l~~W~~~p~-------------------~--~~~~~~~~~~v~~rf~~kl~~~~~~~~~~l 2075 (2105)
T COG5032 2017 LRKNADSLMNVLELFVRDPLIEWRRLPC-------------------F--REIQNNEIVNVLERFRLKLSEKDAEKFVDL 2075 (2105)
T ss_pred HhccHHHHHHHHHHHhcCcchhhhcCcc-------------------c--cchHHHHHHHHHHHHHHHhhhhhhhhhcCC
Confidence 9999999999999999999999972210 0 012345666788999999998553 3568
Q ss_pred CHHHHHHHHHHHhcCchhhhhhCcccccCC
Q 000498 1431 SVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1460 (1460)
Q Consensus 1431 sv~~qV~~LI~~Atd~~nL~~m~~gW~Pwl 1460 (1460)
+|+++|+.||++|||+.|||+||+||+|||
T Consensus 2076 ~I~~sv~~li~~a~d~~~L~~~yi~w~~f~ 2105 (2105)
T COG5032 2076 LINKSVESLITQATDPFQLATMYIGWMPFW 2105 (2105)
T ss_pred cHHHHHHHHHHHHcCHHHHHhhccccccCC
Confidence 999999999999999999999999999997
No 5
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=7.5e-66 Score=681.78 Aligned_cols=962 Identities=17% Similarity=0.215 Sum_probs=679.3
Q ss_pred ccccCHHHHHHHHHHhchhhHHhhhhHhHhHHhhccccCCCCCCCcCCCcchHHHHHHHHHhhcCCchhhhhhhccc--c
Q 000498 330 WLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH--K 407 (1460)
Q Consensus 330 wL~Id~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdEPD~~yGi~~~~--~ 407 (1460)
.++++..++.--+-.-++|++++.++|.....+.. +. ........++|-+||.+|+|-|.+||++... .
T Consensus 2413 ~~~lpp~Li~yl~kt~~~wh~~I~lLE~~~~~~~~-------~~--~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~~~ 2483 (3550)
T KOG0889|consen 2413 PIELPPHLIKYLGKTYNLWHTSIRLLEDHQSNKEM-------EN--TKGDESCLDSLAELYRSLNEEDMFYGLWRRRAKF 2483 (3550)
T ss_pred CCCCCHHHHHHHhccchHHHHHHHHHHHHHHHHHh-------hh--hhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhcc
Confidence 36788999999999999999999999986654310 10 1122456789999999999999999999854 2
Q ss_pred h-hhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhhhhh
Q 000498 408 L-SSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMH 486 (1460)
Q Consensus 408 l-~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~lG~~~ 486 (1460)
. +.+...||..|.|++|+..||.++..... + . ++++++| +.-|+ ..+|+|.+.|.+|+
T Consensus 2484 ~eT~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~-------~-----~-----~~~~~~E--y~lWe--d~WI~Ca~eL~QWd 2542 (3550)
T KOG0889|consen 2484 PETMVALSYEQLGFWEEAQSLYEKAQVKARE-------G-----A-----IPYSESE--YKLWE--DHWIRCASELQQWD 2542 (3550)
T ss_pred HHHHHHHHHHHhhhHHHHhhHHHHHHHHHhc-------c-----c-----CCCCcHH--HHHHH--HHHHHHHHHHHHHH
Confidence 3 46778999999999999999999886532 1 1 1234455 46787 56999999999999
Q ss_pred HHHHhhhccccccCCCCCCcchhHHHHHHHHhcCCCCCcccccCCCCCCCcCcccchhhhhHHHHHHHHhcCCh---HHH
Q 000498 487 VLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDS---EEF 563 (1460)
Q Consensus 487 ~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~~L~Al~~~d~---~~~ 563 (1460)
++..+++...+ .++-.|+|||+.+|+.+....-. ......+...|+..+|+++.++++.+. ..+
T Consensus 2543 vl~e~~k~~~~-----------~~llle~aWrlsdw~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 2609 (3550)
T KOG0889|consen 2543 VLTEFGKHEGN-----------YELLLECAWRLSDWNDQKDALEQ--KAKSLSDVPGFRKELYDAFLALQKKNSNGVGEF 2609 (3550)
T ss_pred HHHHHHhccCC-----------ceeeeehhccCCcchhHHHHHHH--hhhccCCCCcHHHHHHHHHHHHHHHHhhhhhHH
Confidence 99988865322 34567899999999987654311 113345667888999999999987554 477
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHHH
Q 000498 564 YRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNT 643 (1460)
Q Consensus 564 ~~~i~~aR~~l~~~Ls~~s~ES~~~~y~~lvrLq~L~ELe~i~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 643 (1460)
..+|..+-+.-+.++.+...-++..-++.+..+|++.|++|+..+.-.. +++- .++ ......+++.+.+
T Consensus 2610 ~~~i~e~~~l~i~~w~~lP~~v~~~h~~lL~~~QqivEl~Ea~~I~s~l-~~~n---~~n-------~~~~~~d~Ksil~ 2678 (3550)
T KOG0889|consen 2610 ERLIGEAIQLAIREWRQLPERVNHGHVPLLQAFQQIVELQEAAQIYSDL-NDGN---VQN-------LDNKAQDIKSILQ 2678 (3550)
T ss_pred HHHHHHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHHHHhc-cccc---ccc-------cchhHHHHHHHHH
Confidence 7888888777777887766554444466777889999999999864222 2211 111 0012335788999
Q ss_pred HHHHHHHhhhcchhhhhhhhHHHHHHHHhcc----c-----------------chHHHHHHHHHHHHHHhcCChhHHHHH
Q 000498 644 EWSSILKRTQLHMNLLEPFMAFRRVLLQILS----C-----------------KDFTMQHLLESASTLRKGFRLSQAAAA 702 (1460)
Q Consensus 644 ~W~~rl~~~~~~~~~~EpiL~~R~~vl~il~----~-----------------~~~~~~~wl~~a~laRkag~~~~A~~a 702 (1460)
+|+.|+.....++++|+.+..+|+.+++++. . -.+.....+.+|+.|||.|-...+...
T Consensus 2679 ~Wr~RlP~~~Dd~~~Wsdl~~WRq~~y~~I~~~~~~~~~~~~~~~ns~~~~~Gyhe~A~~in~fakvArkh~l~~vcl~~ 2758 (3550)
T KOG0889|consen 2679 TWRDRLPNVWDDMNQWSDLITWRQHAYSMINKAYLPLVPYKQNASNSNNLYRGYHELAWAINRFAKVARKHGLPDVCLNQ 2758 (3550)
T ss_pred HHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHhcccchhhhccCCcchHHHhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 9999999999999999999999999887641 0 133566778999999999999999999
Q ss_pred HHHHhhhcCCCCCCCchhhhhHhH-HHHHHHHHc-CChHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHhhcCChHHH
Q 000498 703 LHELKFLYTGPGDQCSTVYWLGRL-EEAKLLRAQ-GQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRII 780 (1460)
Q Consensus 703 L~~l~~l~~~~~~q~~~~~~~a~l-E~Ak~LWa~-Ge~~~AI~~Lk~l~~~~~~~~~~a~ll~llG~Wlaetr~e~~~~I 780 (1460)
|..+-.++ +-...+++.++ |.|+-.-.. +|...+++.++......+...+.|+.+.+-|.++++.+...+..
T Consensus 2759 L~~iytlp-----~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn- 2832 (3550)
T KOG0889|consen 2759 LAKIYTLP-----NVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEAN- 2832 (3550)
T ss_pred HHHHhccC-----cchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhH-
Confidence 88876553 22334555553 455544433 57888888887776666677789999999999999876444332
Q ss_pred HHHhhhhhhhcccccccchhHHHHHhhhhhhhHHhhHHHHHhhHHHHhccHHHHHHHHHhhhhHHHHHHHHHHHhhcCcc
Q 000498 781 LENYLKPAVSFSEDQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKG 860 (1460)
Q Consensus 781 ~~~Y~~~a~~l~~~~~~~~~~~~~~~~~~~~~lA~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~~~~~~~~ 860 (1460)
+.+..|+++. ....+++..+|.|+|.+++.= +..
T Consensus 2833 --~~fs~AvQi~-----------~~l~KaW~~Wg~y~~~~f~~e---------------------------------~~n 2866 (3550)
T KOG0889|consen 2833 --KAFSAAVQID-----------DGLGKAWAEWGKYLDNRFNKE---------------------------------PVN 2866 (3550)
T ss_pred --HHHHHHHHHH-----------hhhHHHHHHHHHHHHHHHhcc---------------------------------Ccc
Confidence 3344477653 234678889999999988730 000
Q ss_pred ccchhhHHHHHHHHHHhhcHHHHHHhHhhHHHHHHHHHHHHHHHhhcCCccc----hhHHHHHHHhccc--hHHHHHHHH
Q 000498 861 EKTDYSIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYD----VFRLVSLWFSLSS--RQNVIKNMV 934 (1460)
Q Consensus 861 ~~~~y~~~~~~~~~~~~~D~~e~~~l~~~r~~fl~~Al~~Yl~sL~~~~~~d----v~RllsLWf~~~~--~~~v~~~~~ 934 (1460)
..+.+.|+-+|++++...+... +.|+ |||---+ ...+.+++.
T Consensus 2867 ------------------------------i~~a~~avsCyLqA~~~~~~skaRk~iakv--LwLls~dda~~~l~~~~~ 2914 (3550)
T KOG0889|consen 2867 ------------------------------ISFACNAVSCYLQAARLYNSSKARKLIAKV--LWLLSFDDSLGTLGDVFD 2914 (3550)
T ss_pred ------------------------------cHHHHHHHHHHHHHhccccchhhHHHHHHH--HHHHHhccccchHHHHHH
Confidence 1467789999999998876544 8888 8986332 235778999
Q ss_pred HhhccccccchhhhhhhhhccccCCccccccccHHHHHHHHHHHHHHhCChhhhhHHhhcccCCchhhhh----------
Q 000498 935 DTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRIKDKQ---------- 1004 (1460)
Q Consensus 935 ~~l~~iPs~kfl~~lpQL~sRl~~~~~~~~~~~f~~~L~~Ll~~i~~~hP~~~l~~l~~~~~~~~~~~~~---------- 1004 (1460)
+++..||.+.|++|+|||+..+.+.+ .+.+..++.+||+.||||+.|++...+..-.+.+++
T Consensus 2915 k~l~~ip~~~wl~~IPQLl~sLs~~e--------~~~~~~iL~kia~~yPQal~f~lRta~~~~~i~qR~~~~~~~~~~~ 2986 (3550)
T KOG0889|consen 2915 KFLGEIPVWNWLYFIPQLLTSLSKKE--------AKLVRLILIKIAKSYPQALYFPLRTAREDLVIEQRQQVEVMGDKSD 2986 (3550)
T ss_pred HhhccCCchhhhhhhHHHHhhccccc--------hhHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999863 257888999999999999999998764331111100
Q ss_pred ----cccchhhhhhhH-----HHHHHH-----------------HHHHHH----hHHHHHHHHH------------HHHH
Q 000498 1005 ----RSRNSFVVDMDK-----KLAAEN-----------------LLEELS----SYHGAIIRQM------------KQMV 1042 (1460)
Q Consensus 1005 ----~~~~~~~~~~~~-----~~~~~~-----------------il~~~~----~~~~~~~~~~------------~~l~ 1042 (1460)
-.|.+.+....+ ..+.+. |++..- ......+.++ -+++
T Consensus 2987 ~~~p~~r~~~i~~~~r~~~p~~~s~~~~ld~~~~~w~~~~~l~~il~~~~~~la~~~~~~~~~i~~~~~~~~~e~~~r~v 3066 (3550)
T KOG0889|consen 2987 TTDPMGRPSKISQKQRNLHPILSSLEKILDSVQLVWERLFDLEEILKTAYQLLAKTLETLFDKIQARFKSTPEEHALRLV 3066 (3550)
T ss_pred CCCCCCcHHHHHHHhhccCcchhhHHhhhccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccHHHHHHH
Confidence 011111100000 001111 111110 0000011110 0111
Q ss_pred HHHHH-HHhhhh-ccc--ccccc---------------------------------------ccchhhhhhc--------
Q 000498 1043 DVYIK-LAELET-RRE--DTNKR---------------------------------------IQLPREIRCL-------- 1071 (1460)
Q Consensus 1043 ~~~~~-la~~~~-~~~--~~~~~---------------------------------------~~l~~~l~~l-------- 1071 (1460)
.++.. ...... ... ..+.+ ..++.-+.++
T Consensus 3067 ~al~~~~~~~~~~r~~ivt~~~~~~~~~~~~l~~~~~~vl~~~~~~~~k~dFi~~~~~~~~~~~l~~~i~klk~w~~~le 3146 (3550)
T KOG0889|consen 3067 NALLNIDGIQNGNRLGIVTKNTKSLSDTEMNLNRFASNVLPDPVRKKFKEDFITNKDGMKCICDLENYIDKLRKWRSRLE 3146 (3550)
T ss_pred HHHHHHhhhccccccccccccccCCcchHHHHHHHHHHhcchHHHHHHHHHHHhcccCCcccccHHHHHHHHHHHHHHHH
Confidence 11111 000000 000 00000 0000000000
Q ss_pred ------c---ccCc-cccc------ccccCCCCCCccC-----CCCcCccccccceEEEe-cCCCcceEEEEEeCCCceE
Q 000498 1072 ------R---QLEL-VPVV------TATVPIDCTCQYN-----EGSFPYFKGLAESVMVM-NGINAPKVVECFGSDGHKY 1129 (1460)
Q Consensus 1072 ------~---~l~~-~p~~------t~~lp~~~~~~~~-----~~~~~~i~~f~~~v~v~-~s~~~Pk~i~~~gsdG~~y 1129 (1460)
+ .++. .+.. +..+ .-+++|. +..++.|.+|+|.|+++ ++..+-||++++|+||+.|
T Consensus 3147 ~k~~~~pk~~~LE~~s~~L~~F~hq~~ev--EiPGqyl~~k~~~~~~v~I~RF~P~veiv~~~~~~~rRl~iRG~dGk~~ 3224 (3550)
T KOG0889|consen 3147 SKVDRFPKKLNLEEKSRFLSNFSHQFDEV--EIPGQYLLDKSNNNYFVKIERFEPRVEIVRGHGMSYRRLYIRGSDGKIY 3224 (3550)
T ss_pred HHHhcccccccHHhhchHHhcccccCCcc--cCChHHhcccchhhhhhhHHHhccchhhhcccceeEEEEEEeccCCeec
Confidence 0 0000 0000 1111 1112231 12367899999999988 6778999999999999999
Q ss_pred eeeee-cCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceEEEcCCCCchHHHhhhhccCCCCC
Q 000498 1130 RQLAK-SGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAH 1208 (1460)
Q Consensus 1130 ~~L~K-~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~il~~~~~~~~~~ 1208 (1460)
.|.+. +|.-+-|.++||+|+++++|..|.+++||+||++.+.++.+||++++++|+|.+|+.++|++|+..+....+
T Consensus 3225 ~~~~~~~~~~~sRreErvlQL~r~lN~~l~~~~Et~rR~l~~~~p~~ipvs~q~rl~ed~ps~~tl~~I~~~~c~~~~-- 3302 (3550)
T KOG0889|consen 3225 PFAVQYPGLRNSRREERVLQLFRMLNESLGKNKETRRRHLEFKLPIVIPVSSQMRLVEDKPSSITLQEIYEEYCARNN-- 3302 (3550)
T ss_pred ceeeecccCCCccHHHHHHHHHHHHHHHhccChhhhhhhcCccCceeeeccCceEEecCCcchhhHHHHHHHHHHhcC--
Confidence 76554 356789999999999999999999999999999999999999999999999999999999999976443222
Q ss_pred CCcCCCcc------hhHHHHhhhcc----hHhHHHHHHHHHhhhhh--hHHHHHHHHcCCchHHHHHHHHHHHhhhccch
Q 000498 1209 GRYGIGDW------SFLKCREHMSN----VKDKRIAFQEVCENFRP--VLHYFFLERFLQPAYWFEKRLAYTRSVAASSM 1276 (1460)
Q Consensus 1209 ~r~~~~~~------~~~~~~~~~~~----~~~k~~~f~~i~~~~~p--vl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~ 1276 (1460)
+.+.+. .+.+|+..... .+.++.+|+++...+.| ++++||.++|+++.++|.+|++|+.++|+.++
T Consensus 3303 --~~~D~~i~~~~d~l~~~~~~~~~~~~~~~lr~~i~e~i~~~~vp~sil~dy~~~tf~~~~d~w~frk~f~~qla~~~~ 3380 (3550)
T KOG0889|consen 3303 --VSPDDPILLYFDRLAQAYSVLIGLTAAHQLRGQIFEDIQKTMVPRSILKDYFYKTFTNYSDFWTFRKQFTDQLAVFSF 3380 (3550)
T ss_pred --CCcchhhHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCChhhhhhhHhHHHHHHHHHHH
Confidence 222211 12233333211 24578899999999999 89999999999999999999999999999999
Q ss_pred hhheeccCCCCCCeeEEecCCCeEEEeecchhhc-cccCCCCCCCCCcccchhhhhccccccccchhHHHHHHHHHHHhc
Q 000498 1277 VGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFE-QGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRT 1355 (1460)
Q Consensus 1277 vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~-~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~Fr~~~~~t~~~Lr~ 1355 (1460)
.+|++.+|.|.|+.+++.+.||.|..-||-+... ..+.+...|+|||||||||..++|-.|+||.+...+.++.+||-+
T Consensus 3381 ~~~~lni~~~~p~k~~~~~dsG~v~~~~~~~~~~~~~~~~~~~~~VpFRlTpni~~~i~~~~veg~l~~s~~a~ar~l~~ 3460 (3550)
T KOG0889|consen 3381 MEYMLNINGRGPAKLTFAKDSGKVFNTDFLPSYISSKPIFHNNEPVPFRLTPNIQEFIGDFGVEGLLAGSMMAIARCLIE 3460 (3550)
T ss_pred HHHHHhcCCCCccceeeeeccccccchhhccCcccCccccccCCcCCeeecCCchhhhcchhhhhhhHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999984 445688899999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHccCCCcccccChhHHHhhhhcccccccCCCCCCccccccchhHHHHHHHHHhhccC--CCCCCCcCHH
Q 000498 1356 NKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDG--YEGGEMRSVH 1433 (1460)
Q Consensus 1356 ~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~rv~~KL~g--~~~~~~lsv~ 1433 (1460)
+.+.+-.+|..|+||++++|.....+.. .. ++.... .....++.|..|+.. .++....+..
T Consensus 3461 p~~~l~~~l~~~~RDE~~~w~~~~~~~~--------~~-----~~~~~~----~v~~~v~~i~rrv~~~~~~~~ge~~~~ 3523 (3550)
T KOG0889|consen 3461 PDFELDPYLQLFFRDEIISWFKQQTKGV--------PA-----DPLLEE----MVNSNVDLIMRRVASLSSENSGELPDN 3523 (3550)
T ss_pred CccchhHHHHHHHHHHHHHHhhccccCC--------cC-----Chhhhh----hHHHHHHHHhhhhhhhccccccCCCCC
Confidence 9999999999999999999974321100 00 000011 112234555555443 1122223334
Q ss_pred HHHHHHHHHhcCchhhhhhCcccccCC
Q 000498 1434 GQVQQLIQDAIDPERFCLMFPGWGAWL 1460 (1460)
Q Consensus 1434 ~qV~~LI~~Atd~~nL~~m~~gW~Pwl 1460 (1460)
..+..||.+|+|++|||||+|.|+|||
T Consensus 3524 ~t~~~lis~A~s~~nLaqmDp~w~pWl 3550 (3550)
T KOG0889|consen 3524 QTVIDLISQATSPDNLAQMDPTWHPWL 3550 (3550)
T ss_pred ccHHHHHHHhcChhhhhcCCccccccC
Confidence 489999999999999999999999997
No 6
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=100.00 E-value=7.7e-69 Score=615.31 Aligned_cols=274 Identities=65% Similarity=1.165 Sum_probs=258.8
Q ss_pred cccccceEEEecCCCcceEEEEEeCCCceEeeeeecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcC
Q 000498 1100 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1179 (1460)
Q Consensus 1100 i~~f~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs 1179 (1460)
|.+|.|.|.|++|+++||+|+++|+||+.|+||+|. .||+|||+|+||||++||++|++++||++|+|.++||.||||+
T Consensus 1 ~~~f~~~v~v~~s~~~Pkri~~~gsdG~~y~fl~K~-~dDlR~D~rimQl~~~~n~il~~~~e~~~r~l~i~~y~vipls 79 (279)
T cd05171 1 VSKFKDVFTTAGGINAPKIITCVGSDGKKYKQLLKG-GDDDRQDAVMEQVFQLVNTLLERNKETRKRKLRIRTYKVVPLS 79 (279)
T ss_pred CCCccCeEEEecCCCCCEEEEEECCCCCEEEEEecC-CCcccHHHHHHHHHHHHHHHHhhChhhhhcCceeecceEEecC
Confidence 568999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred CCCceEEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhc-----chHhHHHHHHHHHhhhhhhHHHHHHHHc
Q 000498 1180 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMS-----NVKDKRIAFQEVCENFRPVLHYFFLERF 1254 (1460)
Q Consensus 1180 ~~~GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~-----~~~~k~~~f~~i~~~~~pvl~~~f~~~f 1254 (1460)
+++||||||+|++||++|+.... |.|.++.+.++...+|++.+. ...+++++|++++++++|++++||++.|
T Consensus 80 ~~~GLIe~v~~~~tl~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~i~~~~~p~l~~~f~~~~ 156 (279)
T cd05171 80 PRAGILEWVDGTIPLGEYLVGAT---GAHERYRPGDWTARKCRKAMAEVQKESNEERLKVFLKICKNFRPVFRYFFLEKF 156 (279)
T ss_pred CCceEEEECCCChhHHHHHHHhh---hcccccCccchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHhCcHHHHHHHHHHC
Confidence 99999999999999999987543 567788887777666766652 2356789999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccCCCCCCCCCcccchhhhhccc
Q 000498 1255 LQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMG 1334 (1460)
Q Consensus 1255 ~~~~~w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG 1334 (1460)
++|++||.+|++||+|+|++||+|||||||||||+||||+..||+|+|||||++|++|+.+++||+|||||||||+++||
T Consensus 157 ~~~~~~~~~r~~F~~S~A~~s~~~yilglgDRh~~NIll~~~tG~v~hiDf~~~f~~~~~l~~pe~vPFRLT~~~~~~lg 236 (279)
T cd05171 157 LDPQDWFERRLAYTRSVATSSIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFEQGKILPVPETVPFRLTRDIVDGMG 236 (279)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccEEEEcCcCcEEEEechhhhccCcCCCCCCcCChhhhHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCccccc
Q 000498 1335 VTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1377 (1460)
Q Consensus 1335 ~~g~eG~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~ 1377 (1460)
++|++|.|+.+|++++++||++++.|+++|++|+||||++|++
T Consensus 237 ~~g~~g~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~dpl~~W~~ 279 (279)
T cd05171 237 ITGVEGVFRRCCEKTLEVLRDNKDAILTILEVLLYDPLYSWTV 279 (279)
T ss_pred CCCCcchHHHHHHHHHHHHHcChHHHHHHHHHHHhCccccccC
Confidence 9999999999999999999999999999999999999999963
No 7
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=100.00 E-value=4.1e-67 Score=607.57 Aligned_cols=276 Identities=37% Similarity=0.642 Sum_probs=244.8
Q ss_pred cccccceEEEecCCCcceEEEEEeCCCceEeeeeecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcC
Q 000498 1100 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1179 (1460)
Q Consensus 1100 i~~f~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs 1179 (1460)
|.+|.++|.|++|+++||+|+++|+||+.|+||+|+ +||||||+||||||++||.+|+++++|++|+|.|+||.||||+
T Consensus 1 I~~f~~~v~V~~Sk~~Pkri~~~gsDG~~y~fLlK~-~dDLR~D~RimQlf~l~N~ll~~~~~~~~r~L~i~tY~ViPLs 79 (307)
T cd05170 1 IESVGSTVTILPTKTKPKKLAFLGSDGKKYTYLFKG-REDLHLDERIMQFLSIVNTMFASIKDQESPRFRARHYSVTPLG 79 (307)
T ss_pred CccccCeEEEEecCCCceEEEEECCCCCEEEEEecC-CCcccHHHHHHHHHHHHHHHHHhChhhhccCceeecceEEEcC
Confidence 678999999999999999999999999999999995 6999999999999999999999999999999999999999999
Q ss_pred CCCceEEEcCCCCchHHHhhhhccCCCC----------C--CC----cCCCcchhHHHHhhhc-------------chHh
Q 000498 1180 PSAGILEWVDGTVPLGDYLIGSTRNGGA----------H--GR----YGIGDWSFLKCREHMS-------------NVKD 1230 (1460)
Q Consensus 1180 ~~~GLIE~v~~t~sl~~il~~~~~~~~~----------~--~r----~~~~~~~~~~~~~~~~-------------~~~~ 1230 (1460)
+++||||||+|+.||.+++..+.+..+. + .. ..+.+..+.+....+. ....
T Consensus 80 ~~~GLIEwv~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 159 (307)
T cd05170 80 PRSGLIQWVDGATPLFGLYKRWQQREAVLQAQKSQVGYQNPQIPGIVPRPSDLFYNKITPALKAHGLSLDVSRRDWPLSV 159 (307)
T ss_pred CCcceEEEcCCChhHHHHHHHHHHhhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHhhccccccchhhccHHH
Confidence 9999999999999999998754322111 0 00 0111111111111111 1134
Q ss_pred HHHHHHHHHhhhhh-hHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhh
Q 000498 1231 KRIAFQEVCENFRP-VLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAF 1309 (1460)
Q Consensus 1231 k~~~f~~i~~~~~p-vl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f 1309 (1460)
++++|.+++++++| .++++++..+++|++||.+|++||+|+|++||+|||||||||||+||||++.||+++|||||++|
T Consensus 160 ~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~w~~~r~~f~~s~A~~s~~~yilglgDRh~~NIli~~~tG~v~hiDf~~~f 239 (307)
T cd05170 160 LRQVLDELMQETPKDLLARELWCSSTTSSEWWSVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNVCF 239 (307)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCccEEEEcCCCcEEEEeeHhhh
Confidence 68899999999888 68889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccchhhhhccccccccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000498 1310 EQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1376 (1460)
Q Consensus 1310 ~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1376 (1460)
++|+.+++||.|||||||||+++||++|++|.|+.+|+.++++||++++.|+++|++|+||||++|.
T Consensus 240 ~~~~~l~~pE~VPFRLT~~~~~~lg~~g~~G~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~DPl~~W~ 306 (307)
T cd05170 240 EKGKSLRIPEKVPFRMTQNIETALGLTGVEGVFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDWT 306 (307)
T ss_pred cccCCCCCCCCCCeeeCHHHHHHhCCCCCchhHHHHHHHHHHHHHcCHHHHHHHHHHHhhCcccccc
Confidence 9999899999999999999999999999999999999999999999999999999999999999996
No 8
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=100.00 E-value=8.6e-67 Score=588.52 Aligned_cols=247 Identities=23% Similarity=0.370 Sum_probs=236.6
Q ss_pred cccccceEEEe-cCCCcceEEEEEeCCCceEeeeeec-CccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEE
Q 000498 1100 FKGLAESVMVM-NGINAPKVVECFGSDGHKYRQLAKS-GNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVP 1177 (1460)
Q Consensus 1100 i~~f~~~v~v~-~s~~~Pk~i~~~gsdG~~y~~L~K~-g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViP 1177 (1460)
|.+|.|.++|+ ++.++||+|+++|+||+.|+||+|. |++|+|+|+||||||++||.+|.+++||++|+|.++||.|||
T Consensus 1 i~rf~p~~~iv~~~~~~pkri~i~gsdG~~y~fLvk~~~~~d~R~d~Ri~Ql~~liN~~l~~~~et~~r~l~i~~y~viP 80 (253)
T cd05163 1 IERFLPTVEIVRGHGYCYRRLTIRGHDGSIYPFLVQYPAARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLVVP 80 (253)
T ss_pred CcccCCeEEEEccCCCcCcEEEEECCCCCEEEEEEecCCchhHHHHHHHHHHHHHHHHHHhcCHHHHhCcccccceeEEE
Confidence 57899999987 6789999999999999999999994 468999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhh--hHHHHHHHHcC
Q 000498 1178 FTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRP--VLHYFFLERFL 1255 (1460)
Q Consensus 1178 Ls~~~GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~p--vl~~~f~~~f~ 1255 (1460)
|++++|||||++++.||.+++.. |.++|.++++++.| +|++||+++|+
T Consensus 81 Ls~~~gLie~~~~~~tl~~i~~~------------------------------~~~~~~~i~~~~~p~~~l~~~~~~~~~ 130 (253)
T cd05163 81 LSPQIRLVEDDPSYISLQEIYED------------------------------KLEIYNEIQKDMVPDTILKNYILSTFP 130 (253)
T ss_pred cCCccceEEECCCCccHHHHHHH------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHCC
Confidence 99999999999999999987631 77899999999766 99999999999
Q ss_pred CchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccC-CCCCCCCCcccchhhhhccc
Q 000498 1256 QPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMG 1334 (1460)
Q Consensus 1256 ~~~~w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~-l~~pE~VPFRLTrniv~~mG 1334 (1460)
+|++||.+|++||+|+|++||+|||||||||||+|||||..||+|+|||||++|++|+. +++||.|||||||||+++||
T Consensus 131 ~~~~~~~~r~~ft~s~A~~s~~gYilglgdRh~~nili~~~tG~v~hiDf~~~f~~~~~~~~~pE~VPFRLT~ni~~~~g 210 (253)
T cd05163 131 TYQDYWLFRKQFTYQLALLSFMTYILSINNRNPDKIFISRDTGNVYQSDLLPSINNNKPLFHNNEPVPFRLTPNIQHLIG 210 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhEEEEcCCCcEEEEeeeeeecCCCcCCCCCCcCCcccCHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999987 48999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000498 1335 VTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1376 (1460)
Q Consensus 1335 ~~g~eG~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1376 (1460)
++|+||+|+.+|++++++||++++.|+++|++|+||||++|.
T Consensus 211 ~~g~eG~f~~~~~~~~~~Lr~~~~~l~~~L~~fi~Dpl~~W~ 252 (253)
T cd05163 211 PIGLEGILTSSMMAIARCLTEPEFDLENALQLFIRDELIAWH 252 (253)
T ss_pred CcCcCCcHHHHHHHHHHHHhcCHHHHHHHHHHHHcChhhhhc
Confidence 999999999999999999999999999999999999999995
No 9
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=100.00 E-value=2.3e-66 Score=597.62 Aligned_cols=276 Identities=37% Similarity=0.683 Sum_probs=245.5
Q ss_pred cccccceEEEecCCCcceEEEEEeCCCceEeeeeecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcC
Q 000498 1100 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1179 (1460)
Q Consensus 1100 i~~f~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs 1179 (1460)
|.+|.|+|+|++|+++||+|+++|+||+.|+||+|+ +||+|||+|+||+|++||.+|++++||++|+|.++||.|||++
T Consensus 1 I~~f~~~v~v~~s~~~pk~i~~~gsdG~~y~fl~K~-~dDlR~D~r~~ql~~~~n~il~~~~~~~~~~l~~~ty~Vipls 79 (280)
T cd05169 1 ISSFDPVLKVIPSKQRPRRLTIVGSDGKEYKFLLKG-HEDLRLDERVMQLFGLINTLLKNDSETSKRNLSIQTYSVIPLS 79 (280)
T ss_pred CccccCeEEEEeCCCCCeEEEEECCCCCEEEEeecC-CCcchHHHHHHHHHHHHHHHHHhChhhhhcCcceeeccEEecC
Confidence 678999999999999999999999999999999995 6999999999999999999999999999999999999999999
Q ss_pred CCCceEEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHH--HhhhcchHhHHHHHHHHHhhhhh-hHHHHHHHHcCC
Q 000498 1180 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKC--REHMSNVKDKRIAFQEVCENFRP-VLHYFFLERFLQ 1256 (1460)
Q Consensus 1180 ~~~GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~--~~~~~~~~~k~~~f~~i~~~~~p-vl~~~f~~~f~~ 1256 (1460)
+++||||||+|+.||.+++..+....+.+.......+....+ .+.+ ....|.++|++++++.+| ++++||+..|++
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~~~~i~~~~~~~~l~~~~~~~~~~ 158 (280)
T cd05169 80 PNVGLIGWVPGCDTLHSLIREYRKKRNIPLNLEHRLMELKSAPDYDNL-TLIQKLEVFEYALNNTPGDDLRKILWLKSPS 158 (280)
T ss_pred CCcceEEeCCCCchHHHHHHHHHHHcCCChhHHHHHHHHHhhhhhhhC-CHHHHHHHHHHHHHhCCHHHHHHHHHHhCCC
Confidence 999999999999999999976544332211000000000001 1111 124678999999998776 899999999999
Q ss_pred chHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccC-CCCCCCCCcccchhhhhcccc
Q 000498 1257 PAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMGV 1335 (1460)
Q Consensus 1257 ~~~w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~-l~~pE~VPFRLTrniv~~mG~ 1335 (1460)
|..|+.+|++|++|+|++||+|||||||||||+|||||+.||+++|||||++|++|+. +++||+|||||||||+++||+
T Consensus 159 ~~~w~~~r~~F~~S~A~~Sv~~YilglgDRH~~NIll~~~tG~v~HIDfg~~f~~~~~~~~~pE~VPFRLT~~~~~~lG~ 238 (280)
T cd05169 159 SEAWLERRTNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPFRLTRMLVNALGV 238 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhheeccCCCcceEEEEcCCCCEEEEecHHHHhhccccCCCCCcCCcccCHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999976 689999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCccccc
Q 000498 1336 TGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1377 (1460)
Q Consensus 1336 ~g~eG~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~ 1377 (1460)
+|++|.|+.+|+.++++||++++.|+++|++|+||||++|.+
T Consensus 239 ~g~~G~F~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~W~~ 280 (280)
T cd05169 239 SGIEGTFRTTCEDVMNVLRENKESLMAVLEAFVHDPLLSWRL 280 (280)
T ss_pred CCCCCchHHHHHHHHHHHhcChHHHHHHHHHHHhCccccccC
Confidence 999999999999999999999999999999999999999963
No 10
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=100.00 E-value=2.6e-64 Score=562.46 Aligned_cols=233 Identities=35% Similarity=0.663 Sum_probs=225.5
Q ss_pred cccccceEEEecCCCcceEEEEEeCCCceEeeeeecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcC
Q 000498 1100 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1179 (1460)
Q Consensus 1100 i~~f~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs 1179 (1460)
|.+|.++|+|++|+++||+|+++|+||+.|+||+|. +||+|||+|+||+|+++|.+|+++++|++|+|.++||+|+|++
T Consensus 1 i~~~~~~v~v~~S~~~Pkri~~~~~dG~~~~fl~K~-~dDlR~D~r~~Ql~~l~n~~l~~~~~~~~~~l~~~~y~vipls 79 (235)
T cd05172 1 IVGFDERVLVLSSLRKPKRITIRGSDEKEYPFLVKG-GEDLRQDQRIQQLFGVMNNILAQDTACRQRALQLRTYQVIPMT 79 (235)
T ss_pred CCCcCCceEEeccCCCCEEEEEECCCCCEEEEEEEC-CCcccHHHHHHHHHHHHHHHHHhChhhccCCceeecceEEEeC
Confidence 678999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred CCCceEEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchH
Q 000498 1180 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 1259 (1460)
Q Consensus 1180 ~~~GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~ 1259 (1460)
+++||||||+++.||++++.. +++++||++.+++|++
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~-------------------------------------------~~l~~~~~~~~~~~~~ 116 (235)
T cd05172 80 PRFGLIEWLENTTPLKEILKN-------------------------------------------DLLRRALVEMSASPEA 116 (235)
T ss_pred CCCceEEEcCCchhHHHHHhh-------------------------------------------HHHHHHHHHHCCCHHH
Confidence 999999999999999998631 4678899999999999
Q ss_pred HHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccC-CCCCCCCCcccchhhhhccccccc
Q 000498 1260 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMGVTGV 1338 (1460)
Q Consensus 1260 w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~-l~~pE~VPFRLTrniv~~mG~~g~ 1338 (1460)
|+.+|++|++|+|++|++|||||||||||+||||++.||+++|||||++|++|+. +++||+|||||||||+++||+.|+
T Consensus 117 ~~~~r~~F~~S~A~~S~~~YilglgDRH~~NIli~~~tG~v~HIDfg~~f~~~~~~~~~pE~vPFRLT~~~~~~~g~~g~ 196 (235)
T cd05172 117 FLSLRDHFAKSLAAMCVSHWILGIGDRHLSNFLVDLETGGLVGIDFGHAFGTATQFLPIPELMPFRLTPQFVNLMEPMKA 196 (235)
T ss_pred HHHHHHHHHHHHHHHHHHhheeeccCCCcccEEEECCCCcEEEEeeHhhhccCCccCCCCCCCCeeeCHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999999999999999999999986 999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000498 1339 EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1376 (1460)
Q Consensus 1339 eG~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1376 (1460)
+|.|+.+|+.++++||++++.|+++|++|+|||+++|.
T Consensus 197 ~G~f~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~w~ 234 (235)
T cd05172 197 DGLLRSCMVHTLRALRNERHLLLSTMDVFVKEPSLDWK 234 (235)
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHhhCchhhhc
Confidence 99999999999999999999999999999999999995
No 11
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=100.00 E-value=7.4e-63 Score=551.96 Aligned_cols=236 Identities=48% Similarity=0.912 Sum_probs=227.8
Q ss_pred cccccceEEEecCCCcceEEEEEeCCCceEeeeeecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcC
Q 000498 1100 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1179 (1460)
Q Consensus 1100 i~~f~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs 1179 (1460)
|.+|+++++|++|+++||+|++.|+||+.|+||+|. +||||||+|+||+|+++|.+|.++++|++|+|.++||+|||++
T Consensus 1 i~~~~~~~~v~~s~~~P~~i~~~~~dG~~~~~l~K~-~dDLRqD~ri~ql~~l~n~il~~~~~~~~~~l~~~~y~Vipl~ 79 (237)
T cd00892 1 ISGFEDEVEILNSLQKPKKITLIGSDGNSYPFLCKP-KDDLRKDARLMEFNTLINRLLSKDPESRRRRLYIRTYAVIPLN 79 (237)
T ss_pred CccccCeEEEEeccCCceEEEEEcCCCCEEEEEEeC-CCcccHHHHHHHHHHHHHHHHHhCchhccCceeeEeceEEEcC
Confidence 578999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred CCCceEEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchH
Q 000498 1180 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 1259 (1460)
Q Consensus 1180 ~~~GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~ 1259 (1460)
+++||||||+|++||++++... .+|++++||.+.|++|.+
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~~----------------------------------------~~~~l~~~~~~~~~~~~~ 119 (237)
T cd00892 80 EECGIIEWVPNTATLRSILLEI----------------------------------------YPPVFHEWFLENFPDPSA 119 (237)
T ss_pred CCCceEEECCCCccHHHHHHHh----------------------------------------CCHHHHHHHHHHCcCHHH
Confidence 9999999999999999987421 146889999999999999
Q ss_pred HHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccCCCCCCCCCcccchhhhhcccccccc
Q 000498 1260 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE 1339 (1460)
Q Consensus 1260 w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~e 1339 (1460)
|+.+|++|+.|+|++|++|||||||||||+||||++.||+++|||||++|++|+.+++||+|||||||||+++||+.|++
T Consensus 120 ~~~~~~~F~~SlA~~s~~~YilgigDRh~~NIli~~~tG~~~HIDfg~~~~~~~~~~~pe~vPFRLT~~~~~~lg~~g~~ 199 (237)
T cd00892 120 WLKARNAYTRSTAVMSMVGYILGLGDRHGENILFDSNTGDVVHVDFNCLFDKGETLEVPERVPFRLTQNMVDAMGVLGVE 199 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcccEEEEcCCCcEEEEehHhhhcccccCCCCCCCCcccCHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000498 1340 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1376 (1460)
Q Consensus 1340 G~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1376 (1460)
|.|+.+|+.++++||++++.|+++|++|+||||++|.
T Consensus 200 g~F~~~~~~~~~~Lr~~~~~l~~~l~~fi~dpl~~w~ 236 (237)
T cd00892 200 GLFRKSCEVTLRLLRSNKETLMSVLETFIHDPLVEWS 236 (237)
T ss_pred CchHHHHHHHHHHHHhCHHHHHHHHHHHhhccchhcc
Confidence 9999999999999999999999999999999999996
No 12
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=100.00 E-value=2e-59 Score=519.95 Aligned_cols=222 Identities=49% Similarity=0.878 Sum_probs=215.5
Q ss_pred cccccceEEEecCCCcceEEEEEeCCCceEeeeeecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcC
Q 000498 1100 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1179 (1460)
Q Consensus 1100 i~~f~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs 1179 (1460)
|.+|.+.|.|++|+++||+|+++|+||+.|.||+|. .||+|||+|+||+|+++|.+|++++||++|++.++||.|+|++
T Consensus 1 i~~~~~~v~v~~S~~~P~~i~~~~~dG~~~~fl~K~-~dDlR~D~rv~ql~~~~n~il~~~~~~~~~~l~~~~y~vipls 79 (222)
T cd05164 1 IASFDDAVRILGSKQKPKKITLTGSDGKKYLFLVKG-GEDLRQDQRIMQLFQFCNTLLAKDAECRRRKLTIRTYAVIPLN 79 (222)
T ss_pred CccccCeeEEecccCCCEEEEEECCCCCEEEEEEeC-CCcccHHHHHHHHHHHHHHHHHhCchhccCceEeecceEEEcC
Confidence 678999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred CCCceEEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchH
Q 000498 1180 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 1259 (1460)
Q Consensus 1180 ~~~GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~ 1259 (1460)
+++||||||+|+.||+. +|++||+..|+++++
T Consensus 80 ~~~GliE~v~~~~sl~~------------------------------------------------~l~~~~~~~~~~~~~ 111 (222)
T cd05164 80 SRSGLIEWVEGTTTLKP------------------------------------------------VLKKWFWLQFPDPEQ 111 (222)
T ss_pred CCCceEEEcCCcchHHH------------------------------------------------HHHHHHHHHCcCHHH
Confidence 99999999999999873 356788999999999
Q ss_pred HHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccCCCCCCCCCcccchhhhhcccccccc
Q 000498 1260 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE 1339 (1460)
Q Consensus 1260 w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~e 1339 (1460)
||.+|++|+.|+|++|++|||||||||||+||||++.||+++|||||++|++|+.+++||.|||||||||+++||+.|++
T Consensus 112 ~~~~r~~F~~SlA~~s~~~YvlglgDRh~~NIli~~~tG~v~hIDf~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~g~~ 191 (222)
T cd05164 112 WFAARKNYTRSTAVMSIVGYILGLGDRHLDNILIDRETGEVVHIDFGCIFEKGKTLPVPELVPFRLTRNIINGMGITGVE 191 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCceEEEECCCCcEEEEccHHhhccCCCCCCCCCCCEEeCHHHHHHhCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHccC
Q 000498 1340 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHD 1370 (1460)
Q Consensus 1340 G~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~D 1370 (1460)
|.|+.+|+.++++||++++.|+++|++|+||
T Consensus 192 G~f~~~~~~~~~~Lr~~~~~l~s~l~~fv~d 222 (222)
T cd05164 192 GLFRKICEQTLEVFRKHRDTLIAFLEVFVYD 222 (222)
T ss_pred ChHHHHHHHHHHHHHhCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999997
No 13
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=100.00 E-value=1.6e-54 Score=481.56 Aligned_cols=219 Identities=36% Similarity=0.616 Sum_probs=210.3
Q ss_pred cccccceEEEecCCCcceEEEEEeCCCceEeeeeecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcC
Q 000498 1100 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1179 (1460)
Q Consensus 1100 i~~f~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs 1179 (1460)
+.+|.+.++|++|+++||+|+++|+||+.|+||+|. +||+|||+|++|+|+++|.+|++++ ++++.+++|.|||++
T Consensus 1 ~~~~~~~~~v~~s~~~P~~l~~~~~dg~~~~~l~K~-~ddlR~D~~~~ql~~~~n~il~~~~---~~~l~~~~y~vipls 76 (219)
T cd00142 1 IAIDVKICRIMPSKTRPKKLTLIGADGKEYRILFKN-GDDLRQDERVLQFIRLMNKILKKEL---GLDLFLTTYSVIPLS 76 (219)
T ss_pred CCccCCceEEEcccCCCEEEEEEccCCCEEEEEEeC-CCchhHHHHHHHHHHHHHHHHHhCC---CCCceEEeEEEEEec
Confidence 356889999999999999999999999999999996 5999999999999999999999876 689999999999999
Q ss_pred CCCceEEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchH
Q 000498 1180 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 1259 (1460)
Q Consensus 1180 ~~~GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~ 1259 (1460)
+++||||||+|+.|++ +.+++||...++++++
T Consensus 77 ~~~GlIE~v~~~~sl~------------------------------------------------~~l~~~~~~~~~~~~~ 108 (219)
T cd00142 77 PRSGLIEVVPGSVTLE------------------------------------------------DDLSKWLKRKSPDEDE 108 (219)
T ss_pred CCceEEEEeCCCchhH------------------------------------------------HHHHHHHHHHCcCHHH
Confidence 9999999999999987 4567889999999999
Q ss_pred HHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccCCCCCCCCCcccchhhhhcccccccc
Q 000498 1260 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE 1339 (1460)
Q Consensus 1260 w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~e 1339 (1460)
|+.+|++|+.|+|++|++|||||||||||+||||++.||+++|||||++|++++.+..||+|||||||||+++||+.|++
T Consensus 109 ~~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~~G~~~hIDfg~~~~~~~~~~~~e~vPFRLT~~~~~~~g~~~~~ 188 (219)
T cd00142 109 WQEARENFISSLAGYSVAGYILGIGDRHPDNIMIDLDTGKLFHIDFGFIFGKRKKFLGRERVPFRLTPDLVNALGTGGVF 188 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCccEEEECCCCeEEEEeeHHhhCcCcCCCCCCCCCEeccHHHHHHhCCcchh
Confidence 99999999999999999999999999999999999999999999999999999988789999999999999999999999
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHccC
Q 000498 1340 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHD 1370 (1460)
Q Consensus 1340 G~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~D 1370 (1460)
|.|+.+|+.++.+||++++.|+++|++|++|
T Consensus 189 g~F~~~~~~~~~~lr~~~~~i~~ll~~~~~~ 219 (219)
T cd00142 189 GPFRSLCVKAMLILRRHAGLLLNLLSLMLRD 219 (219)
T ss_pred hhHHHHHHHHHHHHHhChHHHHHHHHHhccC
Confidence 9999999999999999999999999999987
No 14
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=100.00 E-value=4.8e-53 Score=494.48 Aligned_cols=250 Identities=25% Similarity=0.380 Sum_probs=221.0
Q ss_pred cccccCCCCCCccCCCCcCcccccc-ceEEEecCCCcceEEEEEeCC--CceEeeeeecCccchhHHHHHHHHHHHHHHH
Q 000498 1080 VTATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTF 1156 (1460)
Q Consensus 1080 ~t~~lp~~~~~~~~~~~~~~i~~f~-~~v~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~l 1156 (1460)
.+..+|++|+. .+.++. ++++|++|+++|++|++.|+| |+.|.+|+|.| ||||||++++|++++||.+
T Consensus 47 ~~~~lP~~p~~--------~i~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~g-DDLRqD~l~~Ql~~l~~~i 117 (352)
T cd00891 47 QEFTLPLDPRL--------EIKGLIIEKCKVMDSKKKPLWLVFKNADPSGEPIKVIFKVG-DDLRQDMLTLQMIRLMDKI 117 (352)
T ss_pred CCccCCCCCce--------EEEEEeccceEEeccccCCcEEEEEecCCCCCEEEEEeccC-CchhHHHHHHHHHHHHHHH
Confidence 35667887753 345554 569999999999999999999 99999999965 9999999999999999999
Q ss_pred HhhCcccccCCceeccceEEEcCCCCceEEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHH
Q 000498 1157 LRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQ 1236 (1460)
Q Consensus 1157 L~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~ 1236 (1460)
|+++. .+|.++||+|+|+++++||||||+|+.|+++|........+ +|.
T Consensus 118 ~~~~~----ldl~l~~Y~Vip~~~~~GlIE~V~ns~tl~~I~~~~~~~~~---------------------------~~~ 166 (352)
T cd00891 118 WKKEG----LDLRMTPYGCIATGDGVGMIEVVPNSETIAKIQKKAGGVGG---------------------------AFK 166 (352)
T ss_pred HHHCC----CCeeeEEEEEEEccCCceEEEEeCCCccHHHHHHhcCcccc---------------------------ccc
Confidence 99875 78999999999999999999999999999998754221110 111
Q ss_pred HHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccC-C
Q 000498 1237 EVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-L 1315 (1460)
Q Consensus 1237 ~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~-l 1315 (1460)
.+.+++||...++++..|..+|.+|++|+|+|||+||||||||||++||||| .+|+++|||||++|+.++. +
T Consensus 167 ------~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysv~~YiLgigDRH~~NILi~-~~G~~~HIDFG~ilg~~~~~~ 239 (352)
T cd00891 167 ------DNPLMNWLKKKNKGEEDYEKAVENFTYSCAGYCVATYVLGIGDRHNDNIMLT-KTGHLFHIDFGHFLGNFKKKF 239 (352)
T ss_pred ------cchHHHHHHHhCCCHHHHHHHHHHHhhhHHHHHHHHHHccccccCCCceEEC-CCCCEEEEehHHhhccCCccC
Confidence 1246789999999999999999999999999999999999999999999999 5999999999999997643 4
Q ss_pred C-CCCCCCcccchhhhhcccccccc--chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000498 1316 K-TPERVPFRLTRDIIDGMGVTGVE--GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1376 (1460)
Q Consensus 1316 ~-~pE~VPFRLTrniv~~mG~~g~e--G~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1376 (1460)
+ .||+||||||++|+++||+.|.+ |.|+.+|+.++.+||+|.+.|++++++|+++++.+|.
T Consensus 240 ~~~~E~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~l~~lm~~~~lp~~~ 303 (352)
T cd00891 240 GIKRERAPFVLTPDMAYVMGGGDSEKFQRFEDLCCKAYNILRKHGNLFINLFSLMLSAGIPELQ 303 (352)
T ss_pred CCCCCCCCeeecHHHHHHhCCCCCcccchHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCCccC
Confidence 4 69999999999999999999976 9999999999999999999999999999999998874
No 15
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=100.00 E-value=8.8e-53 Score=491.23 Aligned_cols=287 Identities=23% Similarity=0.442 Sum_probs=246.8
Q ss_pred ccccCCCCCCccCCCCcCccccc-cceEEEecCCCcceEEEEEeCCC---ceEeeeeecCccchhHHHHHHHHHHHHHHH
Q 000498 1081 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDG---HKYRQLAKSGNDDLRQDAVMEQFFGLVNTF 1156 (1460)
Q Consensus 1081 t~~lp~~~~~~~~~~~~~~i~~f-~~~v~v~~s~~~Pk~i~~~gsdG---~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~l 1156 (1460)
+..+|++|+. .|.++ .+++.|++|+++|+++++.|+|| +.|.+|+|.| ||||||+++||+|++||.+
T Consensus 52 ~~~lP~dp~~--------~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~~~~i~K~g-DDLRqD~l~~Ql~~lm~~i 122 (350)
T cd00896 52 PIPLPLDPSI--------EITGIIPEESSVFKSALMPLKLTFKTEKGNEEGEYPVIFKVG-DDLRQDQLVIQIISLMDRL 122 (350)
T ss_pred CCcCCCCCCe--------EEEEEecCceEEeccccCceEEEEEeCCCCCCceEEEEecCC-cchhHhHHHHHHHHHHHHH
Confidence 4567888853 23343 46799999999999999999999 9999999965 9999999999999999999
Q ss_pred HhhCcccccCCceeccceEEEcCCCCceEEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHH
Q 000498 1157 LRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQ 1236 (1460)
Q Consensus 1157 L~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~ 1236 (1460)
|+++. ++|.++||+|+|+++++||||||+ +.|+++++....
T Consensus 123 l~~~~----ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~~i~~~~~---------------------------------- 163 (350)
T cd00896 123 LKKEN----LDLKLTPYKVLATSPTDGLVEFIP-SVTLASILKKYG---------------------------------- 163 (350)
T ss_pred HHhCC----CCceeEEEEEEEcCCCCcceEEEe-cccHHHHHHHHH----------------------------------
Confidence 99875 899999999999999999999999 999999864210
Q ss_pred HHHhhhhhhHHHHHHHHcCCchHH----HHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccc
Q 000498 1237 EVCENFRPVLHYFFLERFLQPAYW----FEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQG 1312 (1460)
Q Consensus 1237 ~i~~~~~pvl~~~f~~~f~~~~~w----~~~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g 1312 (1460)
.+.+||...++++..| ..+|.+|++|+|+|||+||||||||||++||||+ .||++||||||++|+++
T Consensus 164 --------~l~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLGigDRH~~NILi~-~~G~~~HIDFG~ilg~~ 234 (350)
T cd00896 164 --------GILNYLRKLNPDDGGPLGISPEVMDTFVKSCAGYCVITYILGVGDRHLDNLLLT-KDGKLFHIDFGYILGRD 234 (350)
T ss_pred --------HHHHHHHHHCCCccccccchHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEc-CCCCEEEEEhHHhhCCC
Confidence 0567888888888774 7999999999999999999999999999999999 59999999999999988
Q ss_pred cCCCCCCCCCcccchhhhhccccccccc--hhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhHHHhhhhccc
Q 000498 1313 LMLKTPERVPFRLTRDIIDGMGVTGVEG--VFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMD 1390 (1460)
Q Consensus 1313 ~~l~~pE~VPFRLTrniv~~mG~~g~eG--~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~~ 1390 (1460)
+ .|++||||||++|+++||+.|.+| .|+..|+.++.+||+|.+.|++++++|+++|+.+|...+
T Consensus 235 p---~~~~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~lR~~~~~il~l~~lm~~~~ip~~~~~~----------- 300 (350)
T cd00896 235 P---KPFPPPMKLCKEMVEAMGGAQSEGYQEFKSYCCEAYNILRKSANLILNLFSLMVDANIPDIALDP----------- 300 (350)
T ss_pred C---CCCCCCeeccHHHHHHhCCCCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHcCCCCcccccCH-----------
Confidence 4 588899999999999999999999 999999999999999999999999999999998774321
Q ss_pred ccccCCCCCCccccccchhHHHHHHHHHhhccCCCCCCCcCHHHHHHHHHHHhcCc--hhhhhhCcccccCC
Q 000498 1391 DDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDP--ERFCLMFPGWGAWL 1460 (1460)
Q Consensus 1391 ~~~~~~~~~~~~~~~~n~~a~~~l~rv~~KL~g~~~~~~lsv~~qV~~LI~~Atd~--~nL~~m~~gW~Pwl 1460 (1460)
..++..+++|+.-..+. --....+..||++|.+. .++.-++..|+.||
T Consensus 301 --------------------~~~i~~l~~rf~l~~s~--~ea~~~~~~lI~~s~~~~~t~~~d~~h~~aq~~ 350 (350)
T cd00896 301 --------------------DKAILKVQEKFRLDLSD--EEAIKHFQNLINDSVNALFPVVVDRLHAWAQYW 350 (350)
T ss_pred --------------------HHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 23577888888642211 12456799999999987 47888888888765
No 16
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=100.00 E-value=5.8e-52 Score=484.15 Aligned_cols=248 Identities=20% Similarity=0.347 Sum_probs=216.8
Q ss_pred ccccCCCCCCccCCCCcCcccccc-ceEEEecCCCcceEEEEEeCC--CceEeeeeecCccchhHHHHHHHHHHHHHHHH
Q 000498 1081 TATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1157 (1460)
Q Consensus 1081 t~~lp~~~~~~~~~~~~~~i~~f~-~~v~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL 1157 (1460)
...+|++|+.. +.++. ++++|++|+++|++|++.|+| |+.|.+|+|.| ||||||+++||++++||++|
T Consensus 48 ~~~lP~~p~~~--------~~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~g-DDLRQD~l~~Qli~lm~~i~ 118 (353)
T cd05166 48 KCRLPLNPALD--------VKGIDVRECSYFNSNALPLKISFVNADPMGENISVIFKAG-DDLRQDMLVLQMINIMDKIW 118 (353)
T ss_pred CCccCCCCceE--------EEeEEcCceEEeccccCceEEEEEecCCCCCEEEEEEeCC-CcccHHHHHHHHHHHHHHHH
Confidence 45678877532 23332 688999999999999999999 99999999965 99999999999999999999
Q ss_pred hhCcccccCCceeccceEEEcCCCCceEEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHH
Q 000498 1158 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1237 (1460)
Q Consensus 1158 ~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~~ 1237 (1460)
+++. .+|.+++|.|+|+++++|+||||+|+.|+++|....... .. |.
T Consensus 119 ~~~~----ldL~l~~Y~vip~~~~~GlIE~V~ns~tl~~I~~~~g~~----~~------------------------~~- 165 (353)
T cd05166 119 LQEG----LDLRMITFRCLSTGYDRGMVELVPDAETLRKIQVEEGLT----GS------------------------FK- 165 (353)
T ss_pred HhCC----CCceeEEEEEEEcCCCcceEEEeCCchhHHHHHHHhCcc----cc------------------------cc-
Confidence 9865 789999999999999999999999999999986532100 00 00
Q ss_pred HHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccCCC-
Q 000498 1238 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLK- 1316 (1460)
Q Consensus 1238 i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~- 1316 (1460)
.+.+++||.+.++++..|..+|.+|++|+|+|||+||||||||||++||||+ .+|+++|||||++|+.++...
T Consensus 166 -----~~~l~~~l~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLgigDRH~~NILl~-~~G~l~HIDFG~~lg~~~~~~~ 239 (353)
T cd05166 166 -----DRPIAKWLMKHNPSELEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLT-KSGHMFHIDFGKFLGHAQMFGG 239 (353)
T ss_pred -----chhHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEEeeHHhccccccccc
Confidence 1257889999999999999999999999999999999999999999999999 599999999999999876432
Q ss_pred -CCCCCCcccchhhhhccccc----cccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000498 1317 -TPERVPFRLTRDIIDGMGVT----GVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1376 (1460)
Q Consensus 1317 -~pE~VPFRLTrniv~~mG~~----g~eG~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1376 (1460)
.||+||||||++|+++||.. +..|.|+..|+.++.+||+|.+.|++++++|+++++.+|.
T Consensus 240 ~~~E~~PFrLT~emv~~~ggg~~~s~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~ 304 (353)
T cd05166 240 FKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELS 304 (353)
T ss_pred CCCCCCCccccHHHHHHhcCCCCCcchHhHHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccC
Confidence 48999999999999999854 3457999999999999999999999999999999999995
No 17
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=100.00 E-value=8.8e-51 Score=473.22 Aligned_cols=250 Identities=23% Similarity=0.368 Sum_probs=217.4
Q ss_pred ccccCCCCCCccCCCCcCccccc-cceEEEecCCCcceEEEEEeCC-----CceEeeeeecCccchhHHHHHHHHHHHHH
Q 000498 1081 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSD-----GHKYRQLAKSGNDDLRQDAVMEQFFGLVN 1154 (1460)
Q Consensus 1081 t~~lp~~~~~~~~~~~~~~i~~f-~~~v~v~~s~~~Pk~i~~~gsd-----G~~y~~L~K~g~dDlRqD~r~~Qlf~~iN 1154 (1460)
...+|++|+.. +.++ .++++|++|+++|++|++.|+| |+.|.+|+|.| ||||||++++|+|++||
T Consensus 53 ~~~lPl~P~~~--------v~~i~~~~~~v~~Sk~~P~~l~f~~~d~~~~~g~~~~~IfK~g-DDLRQD~l~lQli~lm~ 123 (366)
T cd05165 53 SFQSPLNPSLK--------LGELRIEKCKVMDSKKKPLWLVFENADPTALSNENVGIIFKNG-DDLRQDMLTLQILRIMD 123 (366)
T ss_pred cCCCCCCCcee--------EeeeecCceEEehhhcCCcEEEEEccCcccccCCceeEEEecC-CcccHHHHHHHHHHHHH
Confidence 35678888542 3333 3568999999999999999998 69999999965 99999999999999999
Q ss_pred HHHhhCcccccCCceeccceEEEcCCCCceEEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHH
Q 000498 1155 TFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIA 1234 (1460)
Q Consensus 1155 ~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~ 1234 (1460)
.+|+++. .+|++++|+|+|+++++|+||||+|+.|+++|........ ...
T Consensus 124 ~i~~~~~----ldL~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~~~~--------------------------~~~ 173 (366)
T cd05165 124 SIWKEEG----LDLRMLPYGCLSTGDKIGLIEVVRDSTTIANIQQETGGNA--------------------------TAA 173 (366)
T ss_pred HHHHhCC----CCceeEEEEEEEecCCceEEEEeCCchhHHHHHHhccccc--------------------------ccc
Confidence 9999865 7999999999999999999999999999999875321100 000
Q ss_pred HHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccC
Q 000498 1235 FQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM 1314 (1460)
Q Consensus 1235 f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~ 1314 (1460)
|. .+.+++||.+.+++++.|..+|.+|++|+|+|||+||||||||||++||||++ ||++||||||++|+.++.
T Consensus 174 f~------~~~l~~wl~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRH~~NILi~~-~G~l~HIDFG~ilg~~~~ 246 (366)
T cd05165 174 FK------KEALLHWLKEKNPTEEKLDAAIEEFTLSCAGYCVATFVLGIGDRHNDNIMVKE-TGQLFHIDFGHILGNYKS 246 (366)
T ss_pred cC------cHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcceEEcC-CCCEEEEehHHhhccCCc
Confidence 10 13577899999998899999999999999999999999999999999999995 999999999999998653
Q ss_pred -CC-CCCCCCcccchhhhhcccccccc------chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000498 1315 -LK-TPERVPFRLTRDIIDGMGVTGVE------GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1376 (1460)
Q Consensus 1315 -l~-~pE~VPFRLTrniv~~mG~~g~e------G~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1376 (1460)
++ .||+||||||++|+++||+.|.+ |.|+.+|+.++.+||++.+.|+++++.|+..++.++.
T Consensus 247 ~~~i~~E~~PFkLT~emv~~mg~~~~~~~s~~f~~F~~~c~~a~~~LR~~~~~il~l~~lM~~s~ip~~~ 316 (366)
T cd05165 247 KFGINRERVPFVLTPDFVHVIGRGKKDNTSEHFQRFQDLCEKAYLALRRHGNLLIILFSMMLMSGLPELT 316 (366)
T ss_pred cCCCCCCCCCeeecHHHHHHhcccCCcCCChhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCcccC
Confidence 55 49999999999999999987776 8999999999999999999999999999998888764
No 18
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=9.4e-51 Score=471.09 Aligned_cols=248 Identities=20% Similarity=0.341 Sum_probs=217.1
Q ss_pred ccccCCCCCCccCCCCcCccccccc-eEEEecCCCcceEEEEEeCC--CceEeeeeecCccchhHHHHHHHHHHHHHHHH
Q 000498 1081 TATVPIDCTCQYNEGSFPYFKGLAE-SVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1157 (1460)
Q Consensus 1081 t~~lp~~~~~~~~~~~~~~i~~f~~-~v~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL 1157 (1460)
+..+|++|+. .|.++.+ .++|+.|+++|++|++.++| |+.|.+|+|.| ||||||++++|++++||++|
T Consensus 49 ~~~lPl~P~~--------~i~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~g-DDLRQD~l~lQli~lmd~i~ 119 (354)
T cd05177 49 SCCLPLNPAL--------RVKGIDADACSYFTSNAAPLKISFINANPLAKNISIIFKTG-DDLRQDMLVLQIVRVMDNIW 119 (354)
T ss_pred CCccCCCCCe--------EEEEEecCccEEehhhcCCCEEEEEecCCCCCeEEEEEeCC-CcccHHHHHHHHHHHHHHHH
Confidence 4568888853 4556654 78999999999999999999 89999999975 99999999999999999999
Q ss_pred hhCcccccCCceeccceEEEcCCCCceEEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHH
Q 000498 1158 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1237 (1460)
Q Consensus 1158 ~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~~ 1237 (1460)
+++. .+|+++||+|+|+++++|+||||+|+.|+++|....... + . |.
T Consensus 120 ~~~~----ldl~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~~~-~--------~-------------------~~- 166 (354)
T cd05177 120 LQEG----LDMQMIIYRCLSTGKTQGLVQMVPDAVTLAKIHRESGLI-G--------P-------------------LK- 166 (354)
T ss_pred HHcC----CCceEEEEEEEecCCCceEEEEeCChHhHHHHHHhhCCC-c--------c-------------------cc-
Confidence 9875 799999999999999999999999999999987532100 0 0 00
Q ss_pred HHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccCCC-
Q 000498 1238 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLK- 1316 (1460)
Q Consensus 1238 i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~- 1316 (1460)
.+.+.+||...++++.+|..++.+|++|+|+|||+||||||||||++||||+ .||++||||||++|+.++.+.
T Consensus 167 -----~~~l~~~~~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRHn~NILi~-~~G~~~HIDFG~ilg~~~~~~~ 240 (354)
T cd05177 167 -----ENTIEKWFHMHNKLKEDYDKAVRNFFHSCAGWCVVTFILGVCDRHNDNIMLT-HSGHMFHIDFGKFLGHAQTFGS 240 (354)
T ss_pred -----hhhHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCceeEc-CCCCEEEEehHHhcCCCccccC
Confidence 1246788988999999999999999999999999999999999999999999 599999999999999987643
Q ss_pred -CCCCCCcccchhhhhccccccccc----hhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000498 1317 -TPERVPFRLTRDIIDGMGVTGVEG----VFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1376 (1460)
Q Consensus 1317 -~pE~VPFRLTrniv~~mG~~g~eG----~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1376 (1460)
.||+||||||++|+++||..|.++ .|+..|+.++.+||+|.+.|++++++|+++++.+|.
T Consensus 241 ~~~E~~PF~LT~emv~~~~~GG~~s~~f~~F~~~c~~a~~~lR~~~~~il~l~~lm~~s~iP~~~ 305 (354)
T cd05177 241 IKRDRAPFIFTSEMEYFITEGGKKPQRFQRFVELCCRAYNIVRKHSQLLLNLLEMMLHAGLPELK 305 (354)
T ss_pred CCcCCCCeeccHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccC
Confidence 489999999999998776656553 699999999999999999999999999999999985
No 19
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=100.00 E-value=1.9e-51 Score=468.57 Aligned_cols=269 Identities=21% Similarity=0.325 Sum_probs=228.0
Q ss_pred CCCcceEEEEEeCCCc--eEeeeeecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceEEEcC
Q 000498 1112 GINAPKVVECFGSDGH--KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVD 1189 (1460)
Q Consensus 1112 s~~~Pk~i~~~gsdG~--~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~ 1189 (1460)
-++|||+.+..|+.+. .|.+|+|. +||||||+++||+|++||.+|+++ +++|.++||+|+|+++++||||||+
T Consensus 14 ~~~r~r~~s~~~~~~~~~~~~~i~K~-gDDLRqD~l~~Ql~~~~~~i~~~~----~l~l~l~~Y~vip~~~~~GlIE~V~ 88 (293)
T cd05168 14 KKERIRKSSPYGHLKSWDLRSVIVKT-GDDLRQELLAMQLIQQFDRIFKEE----GLPLWLRPYEILVTSSNSGLIETIP 88 (293)
T ss_pred HHHHhhhcCccCcCCCCCEEEEEEeC-CCCccHHHHHHHHHHHHHHHHHHC----CCCceeeeEEEEEccCCceeEEEeC
Confidence 3578888888888765 89999996 599999999999999999999976 4899999999999999999999999
Q ss_pred CCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCc-hHHHHHHHHHH
Q 000498 1190 GTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQP-AYWFEKRLAYT 1268 (1460)
Q Consensus 1190 ~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~-~~w~~~R~~ft 1268 (1460)
|+.|+++|...... ..|.+++||.+.|++| +.|+.+|.+|+
T Consensus 89 ns~tl~~i~k~~~~--------------------------------------~~~~l~~~f~~~~~~~~~~~~~a~~nF~ 130 (293)
T cd05168 89 DTVSIDSLKKKLTS--------------------------------------KFKSLLDFFKKTFGDPSERFREAQKNFI 130 (293)
T ss_pred CchhHHHHHHHhcc--------------------------------------CCchHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 99999998643110 2357889999999885 68999999999
Q ss_pred HhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccCCCCCCCCCcccchhhhhcccccccc--chhHHHH
Q 000498 1269 RSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE--GVFRRCC 1346 (1460)
Q Consensus 1269 ~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~e--G~Fr~~~ 1346 (1460)
+|+|+|||+||||||||||++||||++ +|++||||||++|+.++....||+|||||||+|+++||+.|.+ |.|+.+|
T Consensus 131 ~S~A~ySvv~YvLGigDRH~~NILi~~-~G~liHIDFG~~fg~~~~~~~~E~vPFrLT~~mv~~mGg~~s~~~~~F~~~c 209 (293)
T cd05168 131 ESLAGYSLICYLLQIKDRHNGNILIDN-DGHIIHIDFGFMLSNSPGNVGFETAPFKLTQEYIEVMGGVNSDLFNYFKKLF 209 (293)
T ss_pred HHHHHHHHHHHHhhccccCCCceEEcC-CCCEEEEehHHhhcccccCCCCCCCCEEecHHHHHHhCCCCCchhHHHHHHH
Confidence 999999999999999999999999997 9999999999999998877789999999999999999999987 8999999
Q ss_pred HHHHHHHhcChHHHHHHHHHHccCCCcccccChhHHHhhhhcccccccCCCCCCccccccchhHHHHHHHHHhhccCCCC
Q 000498 1347 EKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEG 1426 (1460)
Q Consensus 1347 ~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~rv~~KL~g~~~ 1426 (1460)
+.++.+||++++.|++++++|+++|-+..... ....+..+++|+.-..+
T Consensus 210 ~~~~~~LR~~~~~il~ll~~m~~~~~lp~f~~-------------------------------~~~~i~~l~~r~~l~~s 258 (293)
T cd05168 210 LKGFMALRKHVDRIILLVEIMQSDSKLPCFKA-------------------------------GEFTIQQLRDRFMLNLT 258 (293)
T ss_pred HHHHHHHHhchHHHHHHHHHHccCCCCccccC-------------------------------chHHHHHHHHHhCCCCC
Confidence 99999999999999999999999963321100 01246677777754221
Q ss_pred CCCcCHHHHHHHHHHHhcCchhhhhhCccccc
Q 000498 1427 GEMRSVHGQVQQLIQDAIDPERFCLMFPGWGA 1458 (1460)
Q Consensus 1427 ~~~lsv~~qV~~LI~~Atd~~nL~~m~~gW~P 1458 (1460)
...+..++..||++|.+. .-.++|-.|+-
T Consensus 259 --e~~a~~~~~~lI~~s~~~-~~t~~yD~~q~ 287 (293)
T cd05168 259 --EEQLEVFVDELINQSLDN-WRTRLYDKFQY 287 (293)
T ss_pred --HHHHHHHHHHHHHHHHhc-hhHHHHHHHHH
Confidence 233678999999999984 56666666553
No 20
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=100.00 E-value=2.5e-51 Score=450.77 Aligned_cols=199 Identities=39% Similarity=0.690 Sum_probs=190.5
Q ss_pred eeeeecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceEEEcCCCCchHHHhhhhccCCCCCC
Q 000498 1130 RQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHG 1209 (1460)
Q Consensus 1130 ~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~il~~~~~~~~~~~ 1209 (1460)
.|++|. .||+|||+|++|+|+++|.+|++++|+++|++.++||.|+|+++++||||||+|+.|++++
T Consensus 1 ~~~~K~-~dDlR~D~~~~ql~~~~n~il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~sl~~i------------ 67 (202)
T smart00146 1 AVIFKG-GDDLRQDERVLQLLRLMNKILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNSTTLHQI------------ 67 (202)
T ss_pred CeeecC-CCcccHHHHHHHHHHHHHHHHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCchhHHHH------------
Confidence 378995 5999999999999999999999999999999999999999999999999999999999875
Q ss_pred CcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCC
Q 000498 1210 RYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAM 1289 (1460)
Q Consensus 1210 r~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~ 1289 (1460)
+++||.+.|++|..|+.+|++|++|+|++|++|||||||||||+
T Consensus 68 ------------------------------------l~~~~~~~~~~~~~~~~~~~~F~~SlA~~s~~~YilglgDRh~~ 111 (202)
T smart00146 68 ------------------------------------LYDWFKKKFPDPEDYFEARKNFTRSCAGYSVITYILGLGDRHND 111 (202)
T ss_pred ------------------------------------HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 56789999999999999999999999999999999999999999
Q ss_pred eeEEecCCCeEEEeecchhhccccCCCCC-CCCCcccchhhhhccccccccchhHHHHHHHHHHHhcChHHHHHHHHHHc
Q 000498 1290 NILIDQATAEVVHIDLGVAFEQGLMLKTP-ERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFI 1368 (1460)
Q Consensus 1290 NILld~~tG~vvhIDfg~~f~~g~~l~~p-E~VPFRLTrniv~~mG~~g~eG~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~ 1368 (1460)
||||+ +||+++|||||++|++++.+..| |.|||||||||+++||+.|++|.|+.+|+.++.+||++++.|+++|++|+
T Consensus 112 NIli~-~~G~v~hIDfg~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~~~~g~F~~~~~~~~~~Lr~~~~~i~~~l~~~~ 190 (202)
T smart00146 112 NIMLD-KTGHLFHIDFGFILGNGPKLFGFPERVPFRLTPEMVDVMGDSGYFGLFRSLCERALRALRKNSNLIMSLLELML 190 (202)
T ss_pred cEEEe-CCCCEEEEechhhhCccccCCCCCCCCCeecCHHHHHHhCCCcccchHHHHHHHHHHHHHcCHHHHHHHHHHHc
Confidence 99999 79999999999999999876555 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccC
Q 000498 1369 HDPLYKWALS 1378 (1460)
Q Consensus 1369 ~DpL~~W~~~ 1378 (1460)
+||+.+|...
T Consensus 191 ~d~l~~~~~~ 200 (202)
T smart00146 191 YDGLPDWRSG 200 (202)
T ss_pred CCCChhhcCC
Confidence 9999999743
No 21
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=1.4e-48 Score=452.97 Aligned_cols=248 Identities=25% Similarity=0.385 Sum_probs=213.9
Q ss_pred cccccCCCCCCccCCCCcCccccc-cceEEEecCCCcceEEEEEeCCC-----ceEeeeeecCccchhHHHHHHHHHHHH
Q 000498 1080 VTATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDG-----HKYRQLAKSGNDDLRQDAVMEQFFGLV 1153 (1460)
Q Consensus 1080 ~t~~lp~~~~~~~~~~~~~~i~~f-~~~v~v~~s~~~Pk~i~~~gsdG-----~~y~~L~K~g~dDlRqD~r~~Qlf~~i 1153 (1460)
....+|++|+.. +.++ .++++|+.|+++|.++++.+.|| ..|.+|+|.| ||||||++++|++++|
T Consensus 53 ~~~~lPl~P~~~--------~~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~IfK~G-DDLRQD~l~lQli~lm 123 (365)
T cd00894 53 ESFRVPYDPGLR--------AGALVIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHG-DDLRQDMLILQILRIM 123 (365)
T ss_pred CCCCCCCCCceE--------EEEEEcCceEEEcccCCceEEEEECCCCCccCCCceeEEEeCC-CcccHHHHHHHHHHHH
Confidence 356788888542 2232 57789999999999999999886 5799999976 9999999999999999
Q ss_pred HHHHhhCcccccCCceeccceEEEcCCCCceEEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHH
Q 000498 1154 NTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRI 1233 (1460)
Q Consensus 1154 N~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~ 1233 (1460)
|.+|+++. ++|++++|+|+|+++++|+||||+|+.|+++|........+
T Consensus 124 d~i~~~~~----ldL~l~pY~vi~tg~~~GlIE~V~ns~tl~~I~~~~~~~~~--------------------------- 172 (365)
T cd00894 124 ESIWETES----LDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTG--------------------------- 172 (365)
T ss_pred HHHHHHcC----CCeEEEEEEEEEecCCceEEEEcCCchhHHHHHHhcccccc---------------------------
Confidence 99998764 89999999999999999999999999999998743111000
Q ss_pred HHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhcccc
Q 000498 1234 AFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL 1313 (1460)
Q Consensus 1234 ~f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~ 1313 (1460)
.|. .+.+.+||.+.+++++.|..++.+|++|+|+||++||||||||||++||||+ .+|++||||||++|+.++
T Consensus 173 ~~k------~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLGIgDRHndNImi~-~~G~lfHIDFG~ilg~~~ 245 (365)
T cd00894 173 AFK------DEVLSHWLKEKCPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMIT-ETGNLFHIDFGHILGNYK 245 (365)
T ss_pred ccc------chhHHHHHHHhCCCHHHHHHHHHHHHHHhHHHHHHHHhccccCccccceeEc-CCCCEEEEeeHHhhCCCC
Confidence 000 1257889999999999999999999999999999999999999999999999 599999999999999886
Q ss_pred C-CC-CCCCCCcccchhhhhcccccccc-----chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcc
Q 000498 1314 M-LK-TPERVPFRLTRDIIDGMGVTGVE-----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYK 1374 (1460)
Q Consensus 1314 ~-l~-~pE~VPFRLTrniv~~mG~~g~e-----G~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~ 1374 (1460)
. +. .||+||||||++|+++||+.|.+ +.|+..|+.++.+||++.+.|+++++.++..-+.+
T Consensus 246 ~~~gi~~E~~PFkLT~e~v~vmg~~gg~~s~~f~~F~~~c~~a~~~LRk~~~lil~L~~lM~~sgip~ 313 (365)
T cd00894 246 SFLGINKERVPFVLTPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQ 313 (365)
T ss_pred ccCCCCCCCCCeeecHHHHHHhCccCCcCChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcc
Confidence 5 34 49999999999999999988765 47999999999999999999999999998655543
No 22
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=1.4e-48 Score=452.58 Aligned_cols=249 Identities=22% Similarity=0.330 Sum_probs=207.7
Q ss_pred ccccCCCCCCccCCCCcCccccccceEEEecCCCcceEEEEEeCC--CceEeeeeecCccchhHHHHHHHHHHHHHHHHh
Q 000498 1081 TATVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLR 1158 (1460)
Q Consensus 1081 t~~lp~~~~~~~~~~~~~~i~~f~~~v~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~ 1158 (1460)
+..+|++|+... ..-+.++++|++|+++|++|++.+.| |+.|.+|+|.| ||||||++++|+|++||.+|+
T Consensus 52 ~~~lPl~p~~~~-------~~~~~~~~~v~~Sk~~Pl~l~f~~~~~~g~~~~~IfK~g-DDLRQD~l~~Qli~lmd~i~k 123 (361)
T cd05174 52 HLQSPLSPSIIL-------CEVCVDQCTFMDSKMKPLWIMYKNEEAGGGSVGIIFKNG-DDLRQDMLTLQMIQLMDVLWK 123 (361)
T ss_pred cCCCCCCCceEE-------EEEEcCcEEEEeccCCceEEEEeecCCCCCEEEEEEeCC-CchhHHHHHHHHHHHHHHHHH
Confidence 346788886422 33356889999999999999999976 99999999965 999999999999999999999
Q ss_pred hCcccccCCceeccceEEEcCCCCceEEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHH
Q 000498 1159 NHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEV 1238 (1460)
Q Consensus 1159 ~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~~i 1238 (1460)
++. ++|.+++|+|+|+++++|+||||+|+.|+++|....... +. ...|.
T Consensus 124 ~~~----ldL~l~pY~vi~tg~~~GlIE~V~ns~Tl~~I~~~~~~~-~~------------------------~~~f~-- 172 (361)
T cd05174 124 QEG----LDLRMTPYGCLSTGDKTGLIEVVKNSDTIANIQLNKSNM-AA------------------------TAAFN-- 172 (361)
T ss_pred HCC----CCeeeEEEEEEEecCCceEEEEeCCchhHHHHHHhhccc-ch------------------------hcccc--
Confidence 864 899999999999999999999999999999986431100 00 01111
Q ss_pred HhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhcccc--CCC
Q 000498 1239 CENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL--MLK 1316 (1460)
Q Consensus 1239 ~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~--~l~ 1316 (1460)
.+.+.+||.+.+|+ +.|..++.+|++|||+||++||||||||||++||||++ +|++||||||++|+..+ ...
T Consensus 173 ----~~~l~~~l~~~~~~-~~~~~A~~nF~~S~AgysVvtYiLGIGDRHn~NILi~~-~G~l~HIDFG~ilg~~~~~~~~ 246 (361)
T cd05174 173 ----KDALLNWLKSKNPG-DALDQAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRE-SGQLFHIDFGHFLGNFKTKFGI 246 (361)
T ss_pred ----chHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHHHHHHhcccCcCccceeEcC-CCCEEEEehHHhhcCCcccCCC
Confidence 13567888887765 34567799999999999999999999999999999995 99999999999999753 345
Q ss_pred CCCCCCcccchhhhhccccccc-----cchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcc
Q 000498 1317 TPERVPFRLTRDIIDGMGVTGV-----EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYK 1374 (1460)
Q Consensus 1317 ~pE~VPFRLTrniv~~mG~~g~-----eG~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~ 1374 (1460)
.||+||||||++|+++||..|. .|.|+.+|+.++.+||+|.+.|++++++++...+.+
T Consensus 247 ~~E~vPFkLT~e~v~vmg~G~~~~s~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~~sgip~ 309 (361)
T cd05174 247 NRERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCEQAYKILRRHGTLFLHLFALMKAAGLPE 309 (361)
T ss_pred CCCCCCeeccHHHHHHHccCCCCCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 7999999999999999974322 268999999999999999999999999997655544
No 23
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=7.3e-48 Score=444.47 Aligned_cols=287 Identities=17% Similarity=0.291 Sum_probs=224.0
Q ss_pred HHHHHHHHHHhhhhccccccccccchhhhhhccccCcccccccccCCCCCCccCCCCcCccccccceEEEecCCCcceEE
Q 000498 1040 QMVDVYIKLAELETRREDTNKRIQLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKVV 1119 (1460)
Q Consensus 1040 ~l~~~~~~la~~~~~~~~~~~~~~l~~~l~~l~~l~~~p~~t~~lp~~~~~~~~~~~~~~i~~f~~~v~v~~s~~~Pk~i 1119 (1460)
.+++.+.+++..-.......++..+.+.+..+.... ..+...+|++|+.... + + ..+.++|++|+++|+++
T Consensus 9 ~~~~~L~~i~~~vk~~~~~~~~~~l~~~~~~l~~~~--~~~~~~lPl~p~~~~~-~-~-----~~~~c~v~~S~~~Pl~l 79 (353)
T cd05176 9 RLVQLLGAVAEKVRQASSSTRQVVLQEGMERVQSFF--QKNKCRLPLSPSLVAK-E-L-----NIKVCSFFSSNAVPLKI 79 (353)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHhhc--CCCCCCCCCCcceeEc-c-E-----ehheeEEecccCCceEE
Confidence 355555555543211111122223444444444431 1234568888854221 1 0 23568999999999999
Q ss_pred EEEeCC--CceEeeeeecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceEEEcCCCCchHHH
Q 000498 1120 ECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDY 1197 (1460)
Q Consensus 1120 ~~~gsd--G~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~i 1197 (1460)
++.++| |+.|.+|+|.| ||||||++++|++++||++|++.. .+|.+++|+|+|+++++|+||||||+.|+++|
T Consensus 80 ~f~~~d~~g~~~~~ifK~g-DDLRQD~l~lQli~lmd~i~~~~~----ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I 154 (353)
T cd05176 80 ALVNADPLGEEINVMFKVG-EDLRQDMLALQMIKIMDKIWLQEG----LDLRMVIFKCLSTGKDRGMVELVPASETLRKI 154 (353)
T ss_pred EEEccCCCCCEEEEEEeCC-CCccHHHHHHHHHHHHHHHHHHCC----CCeEEEEEEEEEcCCCceEEEEeCCcHhHHHH
Confidence 999999 99999999976 999999999999999999999764 78999999999999999999999999999998
Q ss_pred hhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchh
Q 000498 1198 LIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMV 1277 (1460)
Q Consensus 1198 l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~v 1277 (1460)
..... ....+ . ...+.+|+....|++..|..+|.+|++|+|+|||+
T Consensus 155 ~~~~~----~~~~~------------------------~------~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsv~ 200 (353)
T cd05176 155 QVEYG----VTGSF------------------------K------DKPLAEWLRKYNPAEEEYEKASENFIYSCAGCCVA 200 (353)
T ss_pred HHHhC----cCCcc------------------------c------cchHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 65321 00000 0 01356677777888899999999999999999999
Q ss_pred hheeccCCCCCCeeEEecCCCeEEEeecchhhccccCC--CCCCCCCcccchhhhhccccccc----cchhHHHHHHHHH
Q 000498 1278 GYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML--KTPERVPFRLTRDIIDGMGVTGV----EGVFRRCCEKTLS 1351 (1460)
Q Consensus 1278 gyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l--~~pE~VPFRLTrniv~~mG~~g~----eG~Fr~~~~~t~~ 1351 (1460)
||||||||||++||||+ .+|+++|||||++|+.++.+ ..||+||||||++|+++||.... -..|+..|..++.
T Consensus 201 tYiLGIgDRHn~NILi~-~~Ghl~HIDFG~ilg~~~~~g~~~~e~~PFkLT~emv~~mgG~~~~s~~f~~F~~lc~~af~ 279 (353)
T cd05176 201 TYVLGICDRHNDNIMLR-STGHMFHIDFGKFLGHAQMFGSFKRDRAPFVLTSDMAYVINGGEKPTIRFQLFVDLCCQAYN 279 (353)
T ss_pred hhhccccCcCCcceEEc-CCCCEEEEeeHHhcCCCccccCCCCCCCCeeecHHHHHHhcCCCCcchhHHHHHHHHHHHHH
Confidence 99999999999999999 59999999999999988653 35899999999999999984322 1359999999999
Q ss_pred HHhcChHHHHHHHHHHccCCCccc
Q 000498 1352 VMRTNKEALLTIVEVFIHDPLYKW 1375 (1460)
Q Consensus 1352 ~Lr~~~~~l~~iL~~f~~DpL~~W 1375 (1460)
+||++.+.|++++++++.-.+.+.
T Consensus 280 ~LRk~~~~il~L~~lM~~s~iP~~ 303 (353)
T cd05176 280 LIRKHSNLFLNLLSLMTQSGLPEL 303 (353)
T ss_pred HHHHhHHHHHHHHHHHhCCCCccc
Confidence 999999999999999987666554
No 24
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=100.00 E-value=7.5e-49 Score=446.48 Aligned_cols=222 Identities=23% Similarity=0.384 Sum_probs=194.6
Q ss_pred EEecCC-CcceEEEEEeCCC--ceEeeeeecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCce
Q 000498 1108 MVMNGI-NAPKVVECFGSDG--HKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGI 1184 (1460)
Q Consensus 1108 ~v~~s~-~~Pk~i~~~gsdG--~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs~~~GL 1184 (1460)
+++.+. ..|-.+.+.-.|| ..|.+|+|. +||||||+++||+|++||.+|++.. ++|.++||+|||+++++|+
T Consensus 9 k~~~~~~~~P~~~~~~~~~~~~~~~~~i~K~-gDDLRqD~l~~Ql~~l~~~i~~~~~----l~l~l~~Y~vi~~s~~~Gl 83 (289)
T cd00893 9 KILQSALKIPYLELKKLTDSTLINSEFIVKC-GDDLRQDILATQIITELQKIFELMF----LDLWLNPYLVLPVSKTGGI 83 (289)
T ss_pred hHHHHhhcCchhhccCccCCCCeeEEEEEEC-CCcccHHHHHHHHHHHHHHHHHHcC----CCceeEEEEEEECCCCcee
Confidence 344444 3565555554444 589999996 4999999999999999999998764 8999999999999999999
Q ss_pred EEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcC--CchHHHH
Q 000498 1185 LEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFL--QPAYWFE 1262 (1460)
Q Consensus 1185 IE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~--~~~~w~~ 1262 (1460)
||||+|++|++++.... .+.+++||.+.|. ++..|+.
T Consensus 84 IE~V~ns~tl~~i~~~~-----------------------------------------~~~l~~~~~~~~~~~~~~~~~~ 122 (289)
T cd00893 84 IEFIPNSISIHEIKKQQ-----------------------------------------INSLYDYFLELYGSYTTEAFLQ 122 (289)
T ss_pred EEEeCCchhHHHHHHhc-----------------------------------------cccHHHHHHHHcCCCCcHHHHH
Confidence 99999999999976321 1235677888887 4678999
Q ss_pred HHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccCC-CCCCCCCcccchhhhhcccccccc--
Q 000498 1263 KRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-KTPERVPFRLTRDIIDGMGVTGVE-- 1339 (1460)
Q Consensus 1263 ~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l-~~pE~VPFRLTrniv~~mG~~g~e-- 1339 (1460)
+|.+|++|+|+|||+||||||||||++|||||+ +|+++|||||++|+.++.. ..||+||||||++|+++||+.|.+
T Consensus 123 a~~nF~~SlA~ySvv~YiLgigDRH~~NILid~-~G~liHIDFG~ilg~~p~~~~~~E~~PFrLT~emv~~mGg~~s~~f 201 (289)
T cd00893 123 ARYNFIESMAGYSLLCYLLQIKDRHNGNILLDS-DGHIIHIDFGFILDSSPGNNLGFEPAAFKFTKEMVDFMGGKKSDDF 201 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCceEECC-CCCEEEEehHHhhCcCCcCCCCCCCCCeeecHHHHHHhCCCCChhH
Confidence 999999999999999999999999999999996 9999999999999997653 457999999999999999999987
Q ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000498 1340 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1376 (1460)
Q Consensus 1340 G~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1376 (1460)
|.|+.+|+.++.+||+|.+.|++++++|+++|+.+|.
T Consensus 202 ~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~ 238 (289)
T cd00893 202 KKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPCFR 238 (289)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcccC
Confidence 7899999999999999999999999999999999885
No 25
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=100.00 E-value=4e-48 Score=450.39 Aligned_cols=250 Identities=25% Similarity=0.379 Sum_probs=207.7
Q ss_pred ccccCCCCCCccCCCCcCccccc-cceEEEecCCCcceEEEEEeC--CCceEeeeeecCccchhHHHHHHHHHHHHHHHH
Q 000498 1081 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGS--DGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1157 (1460)
Q Consensus 1081 t~~lp~~~~~~~~~~~~~~i~~f-~~~v~v~~s~~~Pk~i~~~gs--dG~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL 1157 (1460)
...+|++|+. .+.++ .++++|++|+++|++|++.+. +|..|.+|+|.| ||||||++++|+|++||++|
T Consensus 52 ~~~lPldP~~--------~v~~i~~~~~~v~~S~~~Pl~l~f~~~~~~g~~~~~IfK~g-DDLRQD~l~lQli~lm~~i~ 122 (362)
T cd05173 52 DLQSPLNPSI--------ILSELNVEKCKYMDSKMKPLWIVYNNKLFGGDSLGIIFKNG-DDLRQDMLTLQILRLMDTLW 122 (362)
T ss_pred CCCCCCCCce--------EEEEEEcCceEEecccCCCeEEEEeecCCCCCEEEEEEeCC-CchhHHHHHHHHHHHHHHHH
Confidence 3457888753 23344 356899999999999999764 799999999965 99999999999999999999
Q ss_pred hhCcccccCCceeccceEEEcCCCCceEEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHH
Q 000498 1158 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1237 (1460)
Q Consensus 1158 ~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~~ 1237 (1460)
+++. ++|++++|+|+|+++++|+||||+|+.|+++|........ ....|.
T Consensus 123 k~~~----ldL~l~pY~vi~t~~~~GlIE~V~ns~tl~~I~~~~~~~~-------------------------~~~~f~- 172 (362)
T cd05173 123 KEAG----LDLRIVPYGCLATGDRSGLIEVVSSAETIADIQLNSSNVA-------------------------AAAAFN- 172 (362)
T ss_pred HHCC----CCeeeEEEEEEEccCCceEEEEeCCchhHHHHHHhccccc-------------------------hhcccC-
Confidence 9864 8999999999999999999999999999999874311000 000111
Q ss_pred HHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccc--cCC
Q 000498 1238 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQG--LML 1315 (1460)
Q Consensus 1238 i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g--~~l 1315 (1460)
.+.+.+||.+.++ ++.|..++.+|++|||+|||+||||||||||++||||+ .+|++||||||++|+.. +..
T Consensus 173 -----~~~l~~~l~~~~~-~~~~~~a~~nF~~S~AgYsvvtYILGIGDRHn~NILi~-~~G~l~HIDFG~ilg~~~~~~~ 245 (362)
T cd05173 173 -----KDALLNWLKEYNS-GDDLERAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVR-KNGQLFHIDFGHILGNFKSKFG 245 (362)
T ss_pred -----hhHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEEehHHhhccCCcccC
Confidence 1346778766543 35677789999999999999999999999999999999 59999999999999963 334
Q ss_pred CCCCCCCcccchhhhhccc--ccc---ccchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000498 1316 KTPERVPFRLTRDIIDGMG--VTG---VEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1376 (1460)
Q Consensus 1316 ~~pE~VPFRLTrniv~~mG--~~g---~eG~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1376 (1460)
..||+||||||++|+++|| ..| .+|.|+.+|+.++.+||+|.+.|++++++|+..++.++.
T Consensus 246 ~~~E~vPFkLT~emv~vm~~G~~g~s~~~~~F~~~c~~a~~~LRk~~~lil~l~~lM~~s~ip~~~ 311 (362)
T cd05173 246 IKRERVPFILTYDFIHVIQQGKTGNTEKFGRFRQYCEDAYLILRKNGNLFITLFALMLTAGLPELT 311 (362)
T ss_pred CCCCCCCeeecHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccc
Confidence 5699999999999999985 333 468999999999999999999999999999998887764
No 26
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=100.00 E-value=5.9e-49 Score=443.78 Aligned_cols=229 Identities=42% Similarity=0.772 Sum_probs=177.5
Q ss_pred eEeeeeecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceEEEcCCCCchHHHhhhhccCCCC
Q 000498 1128 KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGA 1207 (1460)
Q Consensus 1128 ~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~il~~~~~~~~~ 1207 (1460)
.|+||+|+ +||+|||+|+||+|+++|.+|.+++++++ +++|.|+|+++++||||||+++.||.+++.......+.
T Consensus 1 ~y~~l~K~-~dDlr~D~~~~ql~~~~n~~l~~~~~~~~----~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~ 75 (235)
T PF00454_consen 1 EYSFLVKG-GDDLRQDERVMQLFRLMNRILKKEGETRE----IRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGH 75 (235)
T ss_dssp -EEEEEEE-SS-CHHHHHHHHHHHHHHHHHHHTT-------------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTT
T ss_pred CceEEEEC-CchhhchhHHHHHHHHHHHHHhcCCCCce----EEEeEEEecCCCCceeEEeccccchhHhhccccccccc
Confidence 49999996 59999999999999999999999987765 99999999999999999999999999999764432221
Q ss_pred CCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhh-hhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCC
Q 000498 1208 HGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCEN-FRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDR 1286 (1460)
Q Consensus 1208 ~~r~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~-~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyIlgLGDR 1286 (1460)
...+.... .+...+...+.. ..+.+.+||++.++++++|+.+|++|++|+|++|+++||||+|||
T Consensus 76 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDR 141 (235)
T PF00454_consen 76 SNDNPSRK--------------YKAKLFEKQSSKVPKDGLRQYFLKSFPSAEEWFEARKNFTRSLAAYSILDYILGLGDR 141 (235)
T ss_dssp TCSC--------------------------------TTHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS-
T ss_pred cccccccc--------------cccccccccccccccchHHHHHHhcCCChhhhHhhhHhhHHHHHHHhhceEEEeecCC
Confidence 11110000 000012222233 334899999999999999999999999999999999999999999
Q ss_pred CCCeeEEecCCCeEEEeecchhhccccCCCCCCCCCcccchhhhhcc----ccccccchhHHHHHHHHHHHhcChHHHHH
Q 000498 1287 HAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGM----GVTGVEGVFRRCCEKTLSVMRTNKEALLT 1362 (1460)
Q Consensus 1287 H~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~m----G~~g~eG~Fr~~~~~t~~~Lr~~~~~l~~ 1362 (1460)
||+||||+..||+++|||||++|+ ++.+++||.|||||||||+++| |+.|.+|.|+.+|+.++++||++++.|++
T Consensus 142 h~~Nili~~~~g~~~hIDfg~~f~-~~~~~~~e~vPFrLT~~~~~~~~~~l~~~~~~g~f~~~~~~~~~~lr~~~~~l~~ 220 (235)
T PF00454_consen 142 HPGNILIDKKTGELIHIDFGFIFG-GKHLPVPETVPFRLTRNMVNAMGGYLGPSGVEGLFRSSCEAILRALRRNKDLLLS 220 (235)
T ss_dssp -TTTEEE-ETTSEEEE--HSSCTT-HHHGSSSS--SSTTHHHHHHHTTTSSSTSHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CchhheeccccceeeeEEeHHhhh-ccccCCCCCCCeEeCHHHHHHHhccCCCchhHhHHHHHHHHHHHHHhcChHHHHH
Confidence 999999999999999999999999 8888999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHccCCCcccc
Q 000498 1363 IVEVFIHDPLYKWA 1376 (1460)
Q Consensus 1363 iL~~f~~DpL~~W~ 1376 (1460)
+|++|++||+++|+
T Consensus 221 ll~~~~~d~l~~w~ 234 (235)
T PF00454_consen 221 LLELFLRDPLIDWR 234 (235)
T ss_dssp HHHHTTTSCSTTSS
T ss_pred HHHHHHhCCCCCCC
Confidence 99999999999996
No 27
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=100.00 E-value=5.7e-47 Score=433.89 Aligned_cols=260 Identities=23% Similarity=0.346 Sum_probs=218.4
Q ss_pred cceEEEecCC-CcceEEEEEeCCCc-------------eEeeeeecCccchhHHHHHHHHHHHHHHHHhhCcccccCCce
Q 000498 1104 AESVMVMNGI-NAPKVVECFGSDGH-------------KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLG 1169 (1460)
Q Consensus 1104 ~~~v~v~~s~-~~Pk~i~~~gsdG~-------------~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~ 1169 (1460)
.++++++.|+ .+|.++++...|+. .+..|+|.| ||||||++++|+|++||++|++.. ++|.
T Consensus 15 ~~~~~~~~S~ak~P~~l~F~~~~~~~~~~~~~~~~~~~~~~~IfK~g-DDLRQD~l~~Qli~lm~~i~~~~~----ldl~ 89 (311)
T cd05167 15 YKSGTPLQSHAKAPILVTFKVKDRGGDELEEVDDGKVSWQACIFKVG-DDCRQDMLALQLISLFKNIFQSAG----LDLY 89 (311)
T ss_pred ccccEEeccCCCCceEEEEEecCCCccccccccccccceEEEEEeCC-CCccHHHHHHHHHHHHHHHHHHCC----CCeE
Confidence 3568899997 68999999988764 489999965 999999999999999999999764 8999
Q ss_pred eccceEEEcCCCCceEEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHH
Q 000498 1170 VRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYF 1249 (1460)
Q Consensus 1170 i~tY~ViPLs~~~GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~ 1249 (1460)
+++|+|+|+++++|+||||+|+.|++++... ..+.+.+|
T Consensus 90 l~~Y~vi~t~~~~GlIE~V~ns~s~~~i~~~-----------------------------------------~~~~l~~~ 128 (311)
T cd05167 90 LFPYRVVATGPGCGVIEVVPNSKSRDQIGRT-----------------------------------------TDNGLYEY 128 (311)
T ss_pred eEEEeEEecCCCceEEEEeCCcHHHHHHHhh-----------------------------------------cccHHHHH
Confidence 9999999999999999999999999986321 11246788
Q ss_pred HHHHcCC--chHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccC-CCCCCCCCcccc
Q 000498 1250 FLERFLQ--PAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLT 1326 (1460)
Q Consensus 1250 f~~~f~~--~~~w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~-l~~pE~VPFRLT 1326 (1460)
|.+.|.+ +..|..+|.+|++|+|+|||+||||||||||++|||||. +|+++|||||++|+.++. ...+|+||||||
T Consensus 129 f~~~~~~~~~~~~~~a~~nF~~S~Agysv~tYiLgigDRHn~NILid~-~G~l~HIDFG~il~~~p~~~~~~E~~PFkLT 207 (311)
T cd05167 129 FTSKYGDESSLAFQKARENFIRSMAAYSLISYLLQIKDRHNGNIMIDD-DGHIIHIDFGFIFEISPGGNLKFESAPFKLT 207 (311)
T ss_pred HHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCccceEEcC-CCCEEEEeeHHhhccCCCCCCCcCCCCEeec
Confidence 8888865 479999999999999999999999999999999999996 999999999999998653 235799999999
Q ss_pred hhhhhccccccccc---hhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhHHHhhhhcccccccCCCCCCccc
Q 000498 1327 RDIIDGMGVTGVEG---VFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDE 1403 (1460)
Q Consensus 1327 rniv~~mG~~g~eG---~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1403 (1460)
++|+++||+.+..| .|+..|..++.+||++.+.|++++++|+...+.++.
T Consensus 208 ~emv~~mGg~~~s~~f~~F~~~~~~~~~~lR~~~~~il~l~~lm~~s~lp~~~--------------------------- 260 (311)
T cd05167 208 KEMVQIMGGSMEATPFKWFVELCVRAFLAVRPYMDEIVSLVELMLDSGLPCFR--------------------------- 260 (311)
T ss_pred HHHHHHhCCCCcchhHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCchhhh---------------------------
Confidence 99999999988766 677789999999999999999999999876665442
Q ss_pred cccchhHHHHHHHHHhhccCCCCCCCcCHHHHHHHHHHHhcCc
Q 000498 1404 YEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDP 1446 (1460)
Q Consensus 1404 ~~~n~~a~~~l~rv~~KL~g~~~~~~lsv~~qV~~LI~~Atd~ 1446 (1460)
..++..+++|+.-..+ ..-...++..||++|.+.
T Consensus 261 -------~~~i~~l~~rf~l~~s--e~~a~~~~~~lI~~s~~~ 294 (311)
T cd05167 261 -------GDTIKNLRQRFAPEKS--EREAAEFMLSLIAESYEK 294 (311)
T ss_pred -------HHHHHHHHHHhCCCCC--HHHHHHHHHHHHHHHHhc
Confidence 1236667777643111 122566888999999874
No 28
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=100.00 E-value=7.6e-45 Score=419.61 Aligned_cols=246 Identities=20% Similarity=0.341 Sum_probs=210.0
Q ss_pred ccccCCCCCCccCCCCcCccccc-cceEEEecCCCcceEEEEEeCC--CceEeeeeecCccchhHHHHHHHHHHHHHHHH
Q 000498 1081 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1157 (1460)
Q Consensus 1081 t~~lp~~~~~~~~~~~~~~i~~f-~~~v~v~~s~~~Pk~i~~~gsd--G~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL 1157 (1460)
+..+|++|+.. +.++ .++++|+.|..+|.++++.+.| |..|.+++|.| ||||||+.++|++++||++|
T Consensus 49 ~~~lPldP~~~--------v~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~G-DDLRQD~l~lQli~lmd~i~ 119 (354)
T cd00895 49 SCRLPLSPSLL--------VKGIVPRDCSYFNSNAVPLKLSFQNVDPLGENIRVIFKCG-DDLRQDMLTLQMIRIMNKIW 119 (354)
T ss_pred CCcCCCCCCeE--------EEEEEcCceEEecccCCCeEEEEEecCCCCCeEEEEEeCC-CCccHHHHHHHHHHHHHHHH
Confidence 45688888542 2232 4678999999999999999999 89999999987 99999999999999999999
Q ss_pred hhCcccccCCceeccceEEEcCCCCceEEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHH
Q 000498 1158 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1237 (1460)
Q Consensus 1158 ~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~~ 1237 (1460)
+++. .+|++++|+|+|+++++|+||||||+.|+++|.... |....+.
T Consensus 120 ~~~~----ldl~l~pY~vl~tg~~~G~IE~V~ns~tl~~I~~~~----g~~g~~~------------------------- 166 (354)
T cd00895 120 VQEG----LDMRMVIFRCFSTGRGRGMVEMIPNAETLRKIQVEH----GVTGSFK------------------------- 166 (354)
T ss_pred HHcC----CCceEEEEEEEecCCCceEEEEeCChhhHHHHHHHh----CcCcccc-------------------------
Confidence 9875 889999999999999999999999999999987531 1110100
Q ss_pred HHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccCC--
Q 000498 1238 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-- 1315 (1460)
Q Consensus 1238 i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l-- 1315 (1460)
...+.+||.+.+|++..|..+|.+|++|||+||++|||||+||||++||||+ .+|+++|||||++|+..+.+
T Consensus 167 -----~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLgIgDRHndNImi~-~~GhlfHIDFG~iLg~~~~~g~ 240 (354)
T cd00895 167 -----DRPLADWLQKHNPTEDEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLK-TTGHMFHIDFGRFLGHAQMFGN 240 (354)
T ss_pred -----cchHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHccccccCCCceeEc-CCCCEEEEeeHHhcCCCcccCC
Confidence 0136778888899999999999999999999999999999999999999999 59999999999999976543
Q ss_pred CCCCCCCcccchhhhhcccccccc----chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcc
Q 000498 1316 KTPERVPFRLTRDIIDGMGVTGVE----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYK 1374 (1460)
Q Consensus 1316 ~~pE~VPFRLTrniv~~mG~~g~e----G~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~ 1374 (1460)
..+|++||+||++|+++||..|.+ ..|+..|..++.+||+|.+.|++++++++.-.+.+
T Consensus 241 ~~re~~PF~Lt~emv~vm~gg~~~S~~f~~F~~lc~~ay~~lRk~~~~il~L~~lM~~sgiP~ 303 (354)
T cd00895 241 IKRDRAPFVFTSDMAYVINGGDKPSSRFHDFVDLCCQAYNLIRKHTHLFLNLLGLMLSCGIPE 303 (354)
T ss_pred CCcCCCCccccHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCcc
Confidence 358999999999999999753432 35999999999999999999999999998654443
No 29
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=3.1e-44 Score=414.70 Aligned_cols=247 Identities=23% Similarity=0.376 Sum_probs=205.0
Q ss_pred ccccCCCCCCccCCCCcCccccc-cceEEEecCCCcceEEEEEeCCC------ceEeeeeecCccchhHHHHHHHHHHHH
Q 000498 1081 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDG------HKYRQLAKSGNDDLRQDAVMEQFFGLV 1153 (1460)
Q Consensus 1081 t~~lp~~~~~~~~~~~~~~i~~f-~~~v~v~~s~~~Pk~i~~~gsdG------~~y~~L~K~g~dDlRqD~r~~Qlf~~i 1153 (1460)
...+|++|+.. +.++ .++++|++|+.+|.+|++.++|| ..|.+++|.| ||||||++++|++++|
T Consensus 52 ~~~lPl~P~~~--------~~~i~~e~c~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~~IfK~G-DDLRQD~l~lQli~lm 122 (366)
T cd05175 52 GFTSPLNPAHQ--------LGNLRLEECRIMSSAKRPLWLNWENPDIMSELLFQNNEIIFKNG-DDLRQDMLTLQIIRIM 122 (366)
T ss_pred CCCCCCCCceE--------EEEEEeccceeechhcCCeEEEEEcCCcccccccCCcceEEeCC-CCccHHHHHHHHHHHH
Confidence 45678888532 2333 35789999999999999999998 4699999976 9999999999999999
Q ss_pred HHHHhhCcccccCCceeccceEEEcCCCCceEEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHH
Q 000498 1154 NTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRI 1233 (1460)
Q Consensus 1154 N~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~ 1233 (1460)
|++|++.. .+|++++|+|+|+++++|+||||+|+.|+++|.... +....+
T Consensus 123 d~i~~~~~----ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~----~~~~~~---------------------- 172 (366)
T cd05175 123 ENIWQNQG----LDLRMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKG----GLKGAL---------------------- 172 (366)
T ss_pred HHHHHHCC----CCeEEEEEEEEEecCCceEEEEcCCchhHHHHHhcc----cccccc----------------------
Confidence 99999865 899999999999999999999999999999986421 000000
Q ss_pred HHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhcccc
Q 000498 1234 AFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL 1313 (1460)
Q Consensus 1234 ~f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~ 1313 (1460)
.| ..+.+++|+.+.++ .+.|..+|.+|++|||+||++||||||||||++||||+. +|+++|||||++|+.++
T Consensus 173 ~~------~~~~l~~~l~~~~~-~~~~~~a~~nF~~S~AgYsV~tYiLGIgDRHndNImi~~-~G~l~HIDFG~iLg~~p 244 (366)
T cd05175 173 QF------NSHTLHQWLKDKNK-GEMYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVKD-DGQLFHIDFGHFLDHKK 244 (366)
T ss_pred cc------CchhHHHHHhhcCC-cHHHHHHHHHHHHHHHHHHHHHHHhcccccCccceeEcC-CCCEEEEehHHhhcCCC
Confidence 00 02346677776654 457889999999999999999999999999999999995 99999999999999875
Q ss_pred C-C-CCCCCCCcccchhhhhcccccc-----cc--chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcc
Q 000498 1314 M-L-KTPERVPFRLTRDIIDGMGVTG-----VE--GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYK 1374 (1460)
Q Consensus 1314 ~-l-~~pE~VPFRLTrniv~~mG~~g-----~e--G~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~ 1374 (1460)
. + ..||+||||||++|+..||.-+ .+ +.|+..|..++.+||+|.+.|+++++.++.-.+.+
T Consensus 245 ~~~~~~~E~~PFkLT~emv~v~~gg~~~~~~s~~f~~F~~lc~~ay~~lRk~~~~ii~L~~lM~~sgiP~ 314 (366)
T cd05175 245 KKFGYKRERVPFVLTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPE 314 (366)
T ss_pred ccCCCCCCCCCeEecHHHHHHhccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 4 4 4699999999999999997432 23 58999999999999999999999999987554443
No 30
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-36 Score=351.72 Aligned_cols=440 Identities=22% Similarity=0.340 Sum_probs=282.0
Q ss_pred hHHHHHHHHHHhhcHHHHHHhHhhHHHHHHHHHHHHHHHh--hcCCccc---hhHHH-HHHHhccc----hHHHHHHHHH
Q 000498 866 SIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCL--VIGDKYD---VFRLV-SLWFSLSS----RQNVIKNMVD 935 (1460)
Q Consensus 866 ~~~~~~~~~~~~~D~~e~~~l~~~r~~fl~~Al~~Yl~sL--~~~~~~d---v~Rll-sLWf~~~~----~~~v~~~~~~ 935 (1460)
+.++.-+.+|-.+|-+++-.+.+ ..|..++|..|+.+- .++|+.- ++.+. +|=++++. ...+...+..
T Consensus 327 kqal~lM~~W~~id~~dalells--s~f~~~sVrayavsrl~~a~deelllYL~qlvqal~ye~~~~~p~~~~~~~v~s~ 404 (843)
T KOG0906|consen 327 KQALALMDKWEEIDVEDALELLS--SYFTHPSVRAYAVSRLKGADDEELLLYLLQLVQALKYENGQQLPEEGNPVPVVSE 404 (843)
T ss_pred HHHHHHhhccccchhhhhhhhcc--ccccCHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhhccCCcccCcCccccc
Confidence 34455567777777776655544 368889999998553 3344322 22221 23344421 0011112223
Q ss_pred hhccccccchhhhhhhhhccccCCccccccccHHHHHHHHHHHHHHhCChhh---hhHHhhcccCCchhhhhcccchhhh
Q 000498 936 TIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHT---IFQLLALANGDRIKDKQRSRNSFVV 1012 (1460)
Q Consensus 936 ~l~~iPs~kfl~~lpQL~sRl~~~~~~~~~~~f~~~L~~Ll~~i~~~hP~~~---l~~l~~~~~~~~~~~~~~~~~~~~~ 1012 (1460)
..++||+ .--..++-|.||=-..... +......-|..+|.+.+...|+-. .|.+.+........+ +...+
T Consensus 405 ~~~si~s-~~t~pl~s~ss~~~ts~tk-e~p~~~s~La~fLi~Ral~n~~l~nflywyl~~e~Ed~~~~k----ry~si- 477 (843)
T KOG0906|consen 405 REGSIPS-VATTPLESLSSRDMTSTTK-EAPKAASDLATFLISRALVNPQLANFLYWYLKVEIEDTPYSK----RYLSI- 477 (843)
T ss_pred ccccccc-cccCccccccCCCcccccc-ccccccchHHHHHHHHHhcCccccceEEEEEEEEecCChHHH----HHHHH-
Confidence 3445555 2222334444433222110 112223468888888888888732 343333221111110 11111
Q ss_pred hhhHHHHHHHHHHHHHh--HH---HHHHHHHHHHHHHHHHHHhhhhc-ccccccccc-chhhhhhccccCcccccccccC
Q 000498 1013 DMDKKLAAENLLEELSS--YH---GAIIRQMKQMVDVYIKLAELETR-REDTNKRIQ-LPREIRCLRQLELVPVVTATVP 1085 (1460)
Q Consensus 1013 ~~~~~~~~~~il~~~~~--~~---~~~~~~~~~l~~~~~~la~~~~~-~~~~~~~~~-l~~~l~~l~~l~~~p~~t~~lp 1085 (1460)
....++.+++ .. ...+.+...+++.+.++.+.... +...++++. +...+.....+.+..+-...+|
T Consensus 478 -------~~~f~~~l~K~~d~r~~~~~L~~Q~~lVd~L~~i~~~v~~~~g~~~kK~e~L~~lL~~~~~~~l~~~~~i~lp 550 (843)
T KOG0906|consen 478 -------MSSFLEALSKRPDGRAIRGSLEAQQALVDELRRIMKEVKRGSGRRKKKIERLRGLLGDHKHMNLLDVRLIALP 550 (843)
T ss_pred -------HHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHhcccccccccceeeccC
Confidence 1122222322 11 23344455677777777654322 111222221 1111221121222333344577
Q ss_pred CCCCCccCCCCcCcccccc-ceEEEecCCCcceEEEEEeCCCc-eEeeeeecCccchhHHHHHHHHHHHHHHHHhhCccc
Q 000498 1086 IDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSDGH-KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDT 1163 (1460)
Q Consensus 1086 ~~~~~~~~~~~~~~i~~f~-~~v~v~~s~~~Pk~i~~~gsdG~-~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~~et 1163 (1460)
++|+. .|.++. ++.+++.|-..|-+|++...+|. +|+.++|.| ||||||+.+.|++++||.+|++.+
T Consensus 551 ldp~v--------~i~~Iip~t~~~FkSsl~Pl~l~fkt~~g~g~y~vIFK~G-DDLrQDqlV~Qii~lMd~LLkken-- 619 (843)
T KOG0906|consen 551 LDPDV--------LIKGIIPDTASLFKSSLMPLKLTFKTDDGGGKYPVIFKKG-DDLRQDQLVLQIIRLMDRLLKKEN-- 619 (843)
T ss_pred CCCCc--------eEeeecCchhhhhhhccCceeEEEEecCCCCceeEEEecC-cchhHHHHHHHHHHHHHHHhcccc--
Confidence 87753 334433 45688899999999999999998 999999988 999999999999999999999876
Q ss_pred ccCCceeccceEEEcCCCCceEEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhh
Q 000498 1164 WKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFR 1243 (1460)
Q Consensus 1164 ~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~ 1243 (1460)
.+|.+++|+|+|+++.-|++|+|++ +|+..|+..+..
T Consensus 620 --lDLkLtpYkVLatg~~eG~vefI~s-~~la~Ils~~~~---------------------------------------- 656 (843)
T KOG0906|consen 620 --LDLKLTPYKVLATGPKEGFVEFIPS-KPLARILSEYHS---------------------------------------- 656 (843)
T ss_pred --ccccceeeEEeccCCCcccEEeecC-CcHHHHHHHHHH----------------------------------------
Confidence 8999999999999999999999985 899988753110
Q ss_pred hhHHHHHHHHcCCc----hHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccCCCCCC
Q 000498 1244 PVLHYFFLERFLQP----AYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPE 1319 (1460)
Q Consensus 1244 pvl~~~f~~~f~~~----~~w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE 1319 (1460)
...|+.+..|+- ..=++.+.+|.+|||+||+++||||+||||++|+|+.+ +|++||||||++|+.. |.|-
T Consensus 657 --I~~ylke~~p~e~ap~gi~~~v~dnfVkScaGYsVitYILGvGDRhldNLllT~-dGk~FHiDFgyIlGRD---PKP~ 730 (843)
T KOG0906|consen 657 --ILMYLKEDRPDENAPFGISPEVMDNFVKSCAGYSVITYILGVGDRHLDNLLLTK-DGKLFHIDFGYILGRD---PKPF 730 (843)
T ss_pred --HHHHHHhhCCCcCCCCCCChhHHHHHHHhhccceeeeeeecccCCCcCceEEcc-CCcEEEEeeeeeccCC---CCCC
Confidence 011222222221 12356788999999999999999999999999999996 9999999999999987 5677
Q ss_pred CCCcccchhhhhcccccccc--chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhH
Q 000498 1320 RVPFRLTRDIIDGMGVTGVE--GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLK 1381 (1460)
Q Consensus 1320 ~VPFRLTrniv~~mG~~g~e--G~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~~~~~ 1381 (1460)
+.|..|++.|+++||..... -.|+..|..++..||++...|+++.++++..-+.+....|.+
T Consensus 731 pp~MkL~kemve~mgg~es~~Yq~F~s~c~~Af~~LRRssnlIlnLf~LM~~~~IPDia~dp~k 794 (843)
T KOG0906|consen 731 PPPMKLAKEMVEGMGGAESKQYQEFRSYCYEAFLILRRSSNLILNLFSLMADANIPDIAFDPNK 794 (843)
T ss_pred CCccccCHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCceeeCcch
Confidence 78999999999999955442 469999999999999999999999999987766655544443
No 31
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-36 Score=370.94 Aligned_cols=386 Identities=17% Similarity=0.239 Sum_probs=291.9
Q ss_pred chHHHHHHHHHhhccccccchhhhhhhhhccccCCccccccccHHHHHHHHHHHHHHhCCh--hhhhHHhhcccCCchhh
Q 000498 925 SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPY--HTIFQLLALANGDRIKD 1002 (1460)
Q Consensus 925 ~~~~v~~~~~~~l~~iPs~kfl~~lpQL~sRl~~~~~~~~~~~f~~~L~~Ll~~i~~~hP~--~~l~~l~~~~~~~~~~~ 1002 (1460)
.+++|.+...+.+.+++....+..+|||+..|.+.. .-...|.++|...+...++ |-+|+++.-...+..
T Consensus 902 PDqeVR~~AVqwi~~ls~DeL~d~LPQlVQALK~E~------yl~S~Lv~FLL~rsl~sl~~ah~lYWlLk~~l~d~q-- 973 (1639)
T KOG0905|consen 902 PDQEVRAHAVQWIARLSNDELLDYLPQLVQALKFEL------YLKSALVQFLLSRSLVSLQFAHELYWLLKDALDDSQ-- 973 (1639)
T ss_pred CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH------hccCHHHHHHHHHHhcchHHHHHHHHHHhhccccce--
Confidence 456788888999999999999999999999998743 3346788999999988887 556666553322211
Q ss_pred hhcccchhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhccccCccccccc
Q 000498 1003 KQRSRNSFVVDMDKKLAAENLLEELSSYHGAIIRQMKQMVDVYIKLAELETRREDTNKRIQLPREIRCLRQLELVPVVTA 1082 (1460)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~la~~~~~~~~~~~~~~l~~~l~~l~~l~~~p~~t~ 1082 (1460)
-..|+..+.. .++....+...+-+..-.+|++.+-.+|+-........+...+.+.+..+..- ..-.+|.
T Consensus 974 -fs~rYq~ll~--------aLl~~~gk~L~~ef~~Q~~Lv~~L~~iae~Vr~as~s~Rq~vL~~~l~~v~~f-f~~n~tc 1043 (1639)
T KOG0905|consen 974 -FSLRYQNLLA--------ALLDCCGKNLREEFKKQHKLVNELGSIAEDVRSASGSARQHVLRTGLGRVDSF-FLQNNTC 1043 (1639)
T ss_pred -eehHHHHHHH--------HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhHHHHHHH-HHhCCce
Confidence 0122211111 12222112222222334567787777776432222222333344444443321 2334577
Q ss_pred ccCCCCCCccCCCCcCccccccceEEEecCCCcceEEEEEe--CCCceEeeeeecCccchhHHHHHHHHHHHHHHHHhhC
Q 000498 1083 TVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKVVECFG--SDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNH 1160 (1460)
Q Consensus 1083 ~lp~~~~~~~~~~~~~~i~~f~~~v~v~~s~~~Pk~i~~~g--sdG~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~ 1160 (1460)
.||+.|.-.... +. ...+.+++|...|-+|+|+| -+|..++.++|.| ||||||+.++|++++||++|.++
T Consensus 1044 rLPL~Pal~vkG---v~----i~~CSyFnSNA~PLKitFvnadp~geni~iIfK~g-DDLRQDml~lQmI~iMdkIWl~e 1115 (1639)
T KOG0905|consen 1044 RLPLCPALDVKG---VR----IRECSYFNSNALPLKITFVNADPLGENISIIFKCG-DDLRQDMLVLQMIRIMDKIWLQE 1115 (1639)
T ss_pred ecccCchheecc---cc----ccccccccCCCcceEEEEecCCCccccceeeeecC-chHHHHHHHHHHHHHHHHHHHhc
Confidence 788877543221 11 24578889999999999999 7799999999987 99999999999999999999988
Q ss_pred cccccCCceeccceEEEcCCCCceEEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHh
Q 000498 1161 RDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCE 1240 (1460)
Q Consensus 1161 ~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~ 1240 (1460)
. .+|++.+|+++|.+-+.|++|-|+|+.||.+|...+.-.+ -
T Consensus 1116 g----LDlrMViFrc~stG~~rgMvElVp~a~TLrKIQve~GltG----s------------------------------ 1157 (1639)
T KOG0905|consen 1116 G----LDLRMVIFRCLSTGYDRGMVELVPNAETLRKIQVEEGLTG----S------------------------------ 1157 (1639)
T ss_pred C----CceeEEEEEeecccccccceeecccHHHHHHHHHHhcccc----c------------------------------
Confidence 6 8999999999999999999999999999999875432111 1
Q ss_pred hhhh-hHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccCC--CC
Q 000498 1241 NFRP-VLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML--KT 1317 (1460)
Q Consensus 1241 ~~~p-vl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l--~~ 1317 (1460)
|.. .+.+|+.+.-|++.++-.+-.||+.|||++|+++|||||+|||.+|||+.+ ||.+||||||-.++...++ -.
T Consensus 1158 -fkD~pla~WL~KhNp~e~eYekA~eNFiySCAG~cVaTYVLGIcDRHNDNIMl~~-sGHmFHIDFGKFLGhaQMfg~fK 1235 (1639)
T KOG0905|consen 1158 -FKDRPLAKWLMKHNPSEFEYEKAVENFIYSCAGWCVATYVLGICDRHNDNIMLTK-SGHMFHIDFGKFLGHAQMFGGFK 1235 (1639)
T ss_pred -cccchHHHHHHhcCCCHHHHHHHHHHHHHhcccceeeeEeeecccccCCceEEec-cCcEEEEehhhhcchHHHhcccc
Confidence 111 367899999999999999999999999999999999999999999999995 9999999999998876554 24
Q ss_pred CCCCCcccchhhhhccccccc----cchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000498 1318 PERVPFRLTRDIIDGMGVTGV----EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1376 (1460)
Q Consensus 1318 pE~VPFRLTrniv~~mG~~g~----eG~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1376 (1460)
..++||-||-+|..++..-+- ...|...|..++..+|+|.+.|+++|..|+.-.+..-.
T Consensus 1236 RDRaPFVfTSdMayvINgG~kpt~~fq~FVDlCCrAyNiiRK~t~lllnlL~lM~~agiPeln 1298 (1639)
T KOG0905|consen 1236 RDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKNTNLLLNLLRLMACAGIPELN 1298 (1639)
T ss_pred cccCCeEEeccchhhhcCCCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCcc
Confidence 789999999999999975443 35799999999999999999999999999998877654
No 32
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-34 Score=348.30 Aligned_cols=410 Identities=21% Similarity=0.303 Sum_probs=286.1
Q ss_pred HHHHHHHHHhhcCCccc---hhHHHHHHHhc------------cchHHHHHHHHHhhccccccchhhhhhhhhccccCCc
Q 000498 896 LALEGYKRCLVIGDKYD---VFRLVSLWFSL------------SSRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTK 960 (1460)
Q Consensus 896 ~Al~~Yl~sL~~~~~~d---v~RllsLWf~~------------~~~~~v~~~~~~~l~~iPs~kfl~~lpQL~sRl~~~~ 960 (1460)
.++.--+.|..+++..| +.-||.-|=.. ..++.|.....+.+..+...+++..+-||+.-|.+.
T Consensus 579 e~L~kLllsvkW~~redvAqmy~LL~~Wp~l~v~~aleLLd~nypD~~VR~fAV~~L~~Lsdd~l~~YLLqLVQalKyE- 657 (1076)
T KOG0904|consen 579 EALPKLLLSVKWNKREDVAQMYYLLKDWPPLSVELALELLDCNYPDPNVRAFAVRCLEQLSDDDLLQYLLQLVQALKYE- 657 (1076)
T ss_pred HHHHHHHheeeeccHHHHHHHHHHHhhCCCCCHHHHHHHhcCCCCcHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcc-
Confidence 34444466666665544 55555555432 235567777788889999999999999999999984
Q ss_pred cccccccHHHHHHHHHHHHHHhCC---hhhhhHHhhcccCCchhhhhcccchhhhhhhHHHHHHHHHHHHH----hHHHH
Q 000498 961 DALGLHNFQFALVSLVKKMAIDHP---YHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELS----SYHGA 1033 (1460)
Q Consensus 961 ~~~~~~~f~~~L~~Ll~~i~~~hP---~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~----~~~~~ 1033 (1460)
+..+..|..+|.+.|..+- |..+|+|.+-..... ...|-+ .|++.-. .....
T Consensus 658 -----pylds~L~rFLL~RAL~N~RIGHflFWhLRSEm~~~~----~~~Rfg------------llLEaYlRGc~~hlk~ 716 (1076)
T KOG0904|consen 658 -----PYLDSALVRFLLKRALRNQRIGHFLFWHLRSEMAQPS----VQQRFG------------LLLEAYLRGCTHHLKV 716 (1076)
T ss_pred -----chhHhHHHHHHHHHHhhccccchhhhhhHHHHhccHH----HHHHHH------------HHHHHHHhccHHHHHH
Confidence 4667788888888776543 345677766432210 000111 1232211 12222
Q ss_pred HHHHHHHHHHHHHHHHhhhh-cccccccc--cc-chhhhhhccccCcccccccccCCCCCCccCCCCcCccccccceEEE
Q 000498 1034 IIRQMKQMVDVYIKLAELET-RREDTNKR--IQ-LPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAESVMV 1109 (1460)
Q Consensus 1034 ~~~~~~~l~~~~~~la~~~~-~~~~~~~~--~~-l~~~l~~l~~l~~~p~~t~~lp~~~~~~~~~~~~~~i~~f~~~v~v 1109 (1460)
+-+|++ +.+.+.++..+.. ...+.+++ +. +...++.....+. +..+.-|++|.... |.. ..++++|
T Consensus 717 l~kQve-~l~kLk~lt~~iK~~~~K~~~~~~~~~l~~~lr~~~~~~~--lq~l~sPLdP~~~l--gel-----~iekckv 786 (1076)
T KOG0904|consen 717 LTKQVE-ALEKLKKLTDLIKLSAEKEDVSQVKEQLKLCLRQLANSEA--LQNLQSPLDPSLKL--GEL-----IIEKCKV 786 (1076)
T ss_pred HHHHHH-HHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhHHHHHH--HHhccCCCChhhhh--cch-----hhhhhhh
Confidence 333332 3344444333211 11111111 11 1111111111110 11234567774322 211 3467899
Q ss_pred ecCCCcceEEEEE----eCCCceEeeeeecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceE
Q 000498 1110 MNGINAPKVVECF----GSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGIL 1185 (1460)
Q Consensus 1110 ~~s~~~Pk~i~~~----gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs~~~GLI 1185 (1460)
|+|+.+|--+.+- |+++ .-..++|+| ||||||..+.|++++|+.+|+... .+|.+.+|.++|++...|||
T Consensus 787 M~SkkrPLwl~~~Np~~~s~~-~v~iIFKNG-DDLRQDMLtLQmLriMd~iWk~~g----lDlrm~PYgcls~Gd~iGlI 860 (1076)
T KOG0904|consen 787 MDSKKRPLWLVFENPDAGSNL-SVGIIFKNG-DDLRQDMLTLQMLRIMDNIWKTEG----LDLRMLPYGCLSTGDRIGLI 860 (1076)
T ss_pred hhccCCceEEEecCCCcccCC-ceeEEEcCC-chHHHHHHHHHHHHHHHHHHHhcC----CCeeccccccccccceeeeE
Confidence 9999999999885 3444 567899998 999999999999999999999876 89999999999999999999
Q ss_pred EEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhh-hHHHHHHHHcCCchHHHHHH
Q 000498 1186 EWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRP-VLHYFFLERFLQPAYWFEKR 1264 (1460)
Q Consensus 1186 E~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~p-vl~~~f~~~f~~~~~w~~~R 1264 (1460)
|.|+|+.|+.+|..+..... + ..-|.+ .|.+|+-+.-|.....=.+-
T Consensus 861 EVV~~s~TIa~IQ~~~g~~~-a-------------------------------t~afn~~~L~~WLKekNp~e~kld~AI 908 (1076)
T KOG0904|consen 861 EVVRNSETIANIQLNTGNMA-A-------------------------------TAAFNKDALLNWLKEKNPGEDKLDAAI 908 (1076)
T ss_pred EEecCchhhhhhhhccccce-e-------------------------------eccCCHHHHHHHHhhcCchHHHHHHHH
Confidence 99999999999864321110 0 011223 67888877777666677888
Q ss_pred HHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccC-CCC-CCCCCcccchhhhhcccccccc---
Q 000498 1265 LAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKT-PERVPFRLTRDIIDGMGVTGVE--- 1339 (1460)
Q Consensus 1265 ~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~-l~~-pE~VPFRLTrniv~~mG~~g~e--- 1339 (1460)
..||.|||+||+++|||||||||.+|||+.+ ||++||||||.+++.++. |.+ .|+|||-||++++..|+-.+..
T Consensus 909 e~Ft~SCAGYcVATyVLGIgDRHsDNIMvke-~GqlFHIDFGHiLGh~KsKlGi~RERvPFvLT~dFl~VI~~G~~~~~~ 987 (1076)
T KOG0904|consen 909 EEFTLSCAGYCVATYVLGIGDRHSDNIMVKE-TGQLFHIDFGHILGHFKSKLGINRERVPFVLTYDFLHVIQKGKTKNSE 987 (1076)
T ss_pred HHHHHhhccceeeeeeecccccccCceEEec-cCcEEEEEhhhhhccchhhcCcccccCceEeecceeeeecccCCCCch
Confidence 9999999999999999999999999999996 999999999999998864 544 7999999999999999865542
Q ss_pred ---chhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000498 1340 ---GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1376 (1460)
Q Consensus 1340 ---G~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~ 1376 (1460)
+.|+.+|+.++.+||+|...+++++..++--.|.+-+
T Consensus 988 ~eF~kFq~~C~~AYl~lr~H~nLfi~LFsmMl~~glPELs 1027 (1076)
T KOG0904|consen 988 KEFQKFQELCEKAYLALRRHGNLFISLFSMMLGTGLPELS 1027 (1076)
T ss_pred hHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhcCCCccc
Confidence 5799999999999999999999999999988887654
No 33
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=100.00 E-value=2.1e-33 Score=334.94 Aligned_cols=314 Identities=29% Similarity=0.397 Sum_probs=250.3
Q ss_pred hHHHHHHHHhcCCCCCcccccCCCCCCCcCcccchhhhhHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 000498 509 TKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEESTEY 588 (1460)
Q Consensus 509 ~~~~~eaAWrlg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~~L~Al~~~d~~~~~~~i~~aR~~l~~~Ls~~s~ES~~~ 588 (1460)
+|+++|||||||+||.+..+... . .....+..+|+++.++++|+++.|...|+++|..++.++++++.|||.+
T Consensus 1 ~~~~~eaaWrl~~Wd~l~~~~~~--~-----~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~ 73 (352)
T PF02259_consen 1 APLAAEAAWRLGDWDLLEEYLSQ--S-----NEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQR 73 (352)
T ss_pred ChHHHHHHHhcCChhhHHHHHhh--c-----cCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 58999999999999987654211 1 1112267889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHHHHHHHHHHhhhcchhhhhhhhHHHHH
Q 000498 589 IYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRV 668 (1460)
Q Consensus 589 ~y~~lvrLq~L~ELe~i~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~~~~~~~~~EpiL~~R~~ 668 (1460)
+|+.+++||+|.|||+++++...... ....+..+.+.|+.|+..+..++++|+|||++|+.
T Consensus 74 ~y~~l~~lq~L~Elee~~~~~~~~~~-------------------~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~ 134 (352)
T PF02259_consen 74 AYPSLVKLQQLVELEEIIELKSNLSQ-------------------NPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRL 134 (352)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcc-------------------cHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999999986422110 12346789999999999999999999999999999
Q ss_pred HHHhcccchHHHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHH
Q 000498 669 LLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYI 748 (1460)
Q Consensus 669 vl~il~~~~~~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~l 748 (1460)
+++++...++...+|+++|++|||+|+++.|.++|.++..+....... ...+.+|+||++|++|++..||..|+.+
T Consensus 135 ~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~----~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 135 VLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL----LPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC----CcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999777778899999999999999999999999999987653221111 1235799999999999999999999888
Q ss_pred Hhh-ccC------------------------------CCchhHHHHHHHHHHHHh----hcCChHHHHHHhhhhhhhccc
Q 000498 749 SEN-YES------------------------------NEEAPDVYRLVGKWLAES----RSSNSRIILENYLKPAVSFSE 793 (1460)
Q Consensus 749 ~~~-~~~------------------------------~~~~a~ll~llG~Wlaet----r~e~~~~I~~~Y~~~a~~l~~ 793 (1460)
+.+ ... ....++++.++|+|+.+. ..++.+++++.|.+ |+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~-a~~~~- 288 (352)
T PF02259_consen 211 LKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKE-ATKLD- 288 (352)
T ss_pred HHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH-HHHhC-
Confidence 762 110 123478899999999999 88899999988887 54332
Q ss_pred ccccchhHHHHHhhhhhhhHHhhHHHHHhhHHHHhccHHHHHHHHHhhhhHHHHHHHHHHHhhcCccccchhhHHHHHHH
Q 000498 794 DQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQ 873 (1460)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~lA~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~y~~~~~~~~ 873 (1460)
....++++++|.|+|..+..... . ....
T Consensus 289 ----------~~~~k~~~~~a~~~~~~~~~~~~---~---------------------------~~~~------------ 316 (352)
T PF02259_consen 289 ----------PSWEKAWHSWALFNDKLLESDPR---E---------------------------KEES------------ 316 (352)
T ss_pred ----------hhHHHHHHHHHHHHHHHHHhhhh---c---------------------------cccc------------
Confidence 22456899999999999875210 0 0000
Q ss_pred HHHhhcHHHHHHhHhhHHHHHHHHHHHHHHHhhcCCccc---hhHHHH
Q 000498 874 KQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYD---VFRLVS 918 (1460)
Q Consensus 874 ~~~~~D~~e~~~l~~~r~~fl~~Al~~Yl~sL~~~~~~d---v~Rlls 918 (1460)
. +..+..|+..||++|++|+.+|+++. +|||||
T Consensus 317 ----------~--~~~~~~~~~~ai~~y~~al~~~~~~~~~~~~RlLt 352 (352)
T PF02259_consen 317 ----------S--QEDRSEYLEQAIEGYLKALSLGSKYVRQDLPRLLT 352 (352)
T ss_pred ----------c--hhHHHHHHHHHHHHHHHHHhhCCCchHHHhhHhcC
Confidence 0 01345799999999999999999954 999975
No 34
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-27 Score=299.12 Aligned_cols=389 Identities=17% Similarity=0.212 Sum_probs=250.6
Q ss_pred HHHHHHHHhhccccccchhhhhhhhhccccCCccccccccHHHHHHHHHHHHHH---hCChhhhhHHhhcccCCchhhhh
Q 000498 928 NVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAI---DHPYHTIFQLLALANGDRIKDKQ 1004 (1460)
Q Consensus 928 ~v~~~~~~~l~~iPs~kfl~~lpQL~sRl~~~~~~~~~~~f~~~L~~Ll~~i~~---~hP~~~l~~l~~~~~~~~~~~~~ 1004 (1460)
.+.....+.+.+.|...-+..+|||++-|....- .-+..++.+.+. -+-|+.+|.+.+-...+. .
T Consensus 1351 ~~~~~~~~~l~s~~~~~~~fyvPQiVq~lryDkm--------~~v~~~il~~a~~s~l~aHqliWnm~~n~y~d~----~ 1418 (1803)
T KOG0902|consen 1351 RLMQYAVRVLRSYSPNEMLFYVPQIVQALRYDKM--------GYVEEYILWAAGKSQLFAHQLIWNMKANLYVDE----E 1418 (1803)
T ss_pred HHHHHHHHHHHhCChhhhhhhhHHHHHHHhhcch--------hHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccc----c
Confidence 3455566778888988899999999999987421 124444444433 366688999976332211 1
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh-hccccccccccchhhhhhccccCcccccccc
Q 000498 1005 RSRNSFVVDMDKKLAAENLLEELSSYHGAIIRQMKQMVDVYIKLAELE-TRREDTNKRIQLPREIRCLRQLELVPVVTAT 1083 (1460)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~la~~~-~~~~~~~~~~~l~~~l~~l~~l~~~p~~t~~ 1083 (1460)
+.........-....+.|++.++.....+...-..+++.+..+...- +-.....++..+.+.+.+++--..+++|+.+
T Consensus 1419 -~~~~~~~~~~l~~~~e~i~~~~s~~a~df~~rEf~ff~~vT~ISg~l~P~~k~~erk~~i~~~l~kik~~~~~YlPs~P 1497 (1803)
T KOG0902|consen 1419 -AIVKADIGEILDRVREEITGSLSGPARDFYEREFDFFNKVTSISGKLKPYPKGDERKKAILEELSKIKVQPGCYLPSNP 1497 (1803)
T ss_pred -cccchhHHHHHHHHHHHHHhcCCchhhHHHHHHhHHHHHhhhccceeecCCCcHHHHHHHHHHHHhhcccCceecCCCC
Confidence 11000001011122344555554444445554455666555554321 1000012233344444443322233333332
Q ss_pred cCCCCCCccCCCC-------cCccccccceEEEecCCCcceEEEEEeCCCceEeeeeecCccchhHHHHHHHHHHHHHHH
Q 000498 1084 VPIDCTCQYNEGS-------FPYFKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTF 1156 (1460)
Q Consensus 1084 lp~~~~~~~~~~~-------~~~i~~f~~~v~v~~s~~~Pk~i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~l 1156 (1460)
-.+--..+|..|. .|++..|.-+-..-.|.+.-. .+.--+...-++|.| ||+|||....|++.++..+
T Consensus 1498 ~~~v~~i~~~Sg~plQS~aK~PfmatF~vkr~~~~g~~~~~----k~~~~~WQa~IFKvG-DDcRQD~LaLQiislf~~i 1572 (1803)
T KOG0902|consen 1498 DAVVLDIDYKSGTPLQSAAKAPFMATFKVKRLEKDGLQCRS----KSQKISWQAAIFKVG-DDCRQDMLALQIISLFKNI 1572 (1803)
T ss_pred CceEEEeecCCCccchhhccCCeeEEEeeeeccCCcccccc----cccchhhhhhhhhcC-chHHHHHHHHHHHHHHHHH
Confidence 1111122333331 233332211100011111000 000001123689987 9999999999999999999
Q ss_pred HhhCcccccCCceeccceEEEcCCCCceEEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHH
Q 000498 1157 LRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQ 1236 (1460)
Q Consensus 1157 L~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~ 1236 (1460)
++.-. .++.+-+|+|+|.+|.||+||.|||+.+=..+=..
T Consensus 1573 f~~~g----Ld~~lfPYrV~aT~pGcGVIEviPn~~SRdqlGr~------------------------------------ 1612 (1803)
T KOG0902|consen 1573 FQLVG----LDLYLFPYRVVATAPGCGVIEVIPNSKSRDQLGRE------------------------------------ 1612 (1803)
T ss_pred HHHcC----CceEEeeeeeeccCCCCceEEeCCCCccHHHhccc------------------------------------
Confidence 99765 89999999999999999999999999987653110
Q ss_pred HHHhhhhhhHHHHHHHHcCC--chHHHHHHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccC
Q 000498 1237 EVCENFRPVLHYFFLERFLQ--PAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM 1314 (1460)
Q Consensus 1237 ~i~~~~~pvl~~~f~~~f~~--~~~w~~~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~ 1314 (1460)
...-|++||..+|.+ +..|-++|.||.+|+|+||+++|.|.+.|||..|||||. -|+++|||||+.||..+.
T Consensus 1613 -----t~~glyeyF~~~~G~~~s~~fq~Ar~NF~~S~A~Ysv~s~lLq~KDRHNGNim~Dd-~G~~iHIDFGf~~e~sPG 1686 (1803)
T KOG0902|consen 1613 -----TDNGLYEYFTRKYGDESSEAFQTARYNFVRSMAGYSVLSYLLQIKDRHNGNIMIDD-QGHIIHIDFGFMFESSPG 1686 (1803)
T ss_pred -----ccccHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcccccccCCceeEcc-CCCEEEEeeeeEEecCCC
Confidence 011256788888764 679999999999999999999999999999999999995 899999999999997543
Q ss_pred C-CCCCCCCcccchhhhhccccccc---cchhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhH
Q 000498 1315 L-KTPERVPFRLTRDIIDGMGVTGV---EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLK 1381 (1460)
Q Consensus 1315 l-~~pE~VPFRLTrniv~~mG~~g~---eG~Fr~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~~~~~ 1381 (1460)
= -.-|. ||+||.+|+..||+.-- ...|...|..++-+.|.+.+.|.+..+.|+--.|.++...+.+
T Consensus 1687 gnl~fE~-~fKLt~Em~~~mgG~~~~~~f~~f~elcVk~yLA~R~~~~~iv~~V~~mldsgLPCfrg~~i~ 1756 (1803)
T KOG0902|consen 1687 GNLGFEP-PFKLTKEMVMLMGGKMEAKPFKWFQELCVKGYLAARPYMDAIVSLVQSMLDSGLPCFRGQTIG 1756 (1803)
T ss_pred CccCcCC-CccchHHHHHHhCCCCCCCcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhcCCCccCcchHH
Confidence 1 23366 99999999999994221 1358899999999999999999999999999999998665544
No 35
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.2e-25 Score=266.97 Aligned_cols=198 Identities=23% Similarity=0.389 Sum_probs=173.2
Q ss_pred CCceEeeeeecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceEEEcCCCCchHHHhhhhccC
Q 000498 1125 DGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRN 1204 (1460)
Q Consensus 1125 dG~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~il~~~~~~ 1204 (1460)
+......++|.| |||||+....||+..+-.+|...+ -.|+||+|+|+-+|.++||||-|+|+.++|.|-...
T Consensus 584 nWdL~SVIVKtG-dDLrQE~fA~Qli~~f~~IW~Eeg----vplWlRpykIlvtss~sGLIEtI~da~SIHsIKk~l--- 655 (847)
T KOG0903|consen 584 NWDLRSVIVKTG-DDLRQELFAYQLISAFKDIWQEEG----VPLWLRPYKILVTSSDSGLIETIVDAMSIHSIKKRL--- 655 (847)
T ss_pred CcceEEEeeecC-chHHHHHHHHHHHHHHHHHHHHcC----CcceeeeEEEEEEecCccceeeccchhhHHHHHHhc---
Confidence 345567899987 999999999999999999999876 689999999999999999999999999999974321
Q ss_pred CCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHc-CCchHHHHHHHHHHHhhhccchhhheecc
Q 000498 1205 GGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERF-LQPAYWFEKRLAYTRSVAASSMVGYIVGL 1283 (1460)
Q Consensus 1205 ~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f-~~~~~w~~~R~~ft~S~A~~S~vgyIlgL 1283 (1460)
+. + -.|++||...+ ++...|-.+.+||..|+|+||+|+|+|.+
T Consensus 656 --------~~-----------------------~-----~~l~~F~~~~g~~NS~~yk~AQrNFvqSlagYSLvcYlLQv 699 (847)
T KOG0903|consen 656 --------PN-----------------------L-----ASLRHFFAAFGKPNSEKYKSAQRNFVQSLAGYSLVCYLLQV 699 (847)
T ss_pred --------ch-----------------------h-----hhHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 00 0 02345555554 36788999999999999999999999999
Q ss_pred CCCCCCeeEEecCCCeEEEeecchhhccccCCCCCCCCCcccchhhhhccccccccc----hhHHHHHHHHHHHhcChHH
Q 000498 1284 GDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEG----VFRRCCEKTLSVMRTNKEA 1359 (1460)
Q Consensus 1284 GDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG----~Fr~~~~~t~~~Lr~~~~~ 1359 (1460)
.|||..|||||. -|.++|||||+.+...+..---|..||.||.++++.|| |++| .|+..|...+..+|+|.+.
T Consensus 700 KDRHNGNILiD~-EGHIIHIDFGFmLsnsPgnvgFEsAPFKLT~EylEvmg--G~~~d~FdyfK~L~l~gf~a~RKhadr 776 (847)
T KOG0903|consen 700 KDRHNGNILIDE-EGHIIHIDFGFMLSNSPGNVGFESAPFKLTTEYLEVMG--GLDSDMFDYFKSLMLQGFMALRKHADR 776 (847)
T ss_pred ccccCCceEecC-CCCEEEEeeeeEecCCCCCcccccCchhhHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999996 89999999999999887766679999999999999999 8887 4889999999999999999
Q ss_pred HHHHHHHHcc
Q 000498 1360 LLTIVEVFIH 1369 (1460)
Q Consensus 1360 l~~iL~~f~~ 1369 (1460)
|..+.|+|-.
T Consensus 777 Iv~lvEiMq~ 786 (847)
T KOG0903|consen 777 IVLLVEIMQD 786 (847)
T ss_pred HHHHHHHhhc
Confidence 9999999854
No 36
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.91 E-value=1.4e-24 Score=255.85 Aligned_cols=165 Identities=20% Similarity=0.338 Sum_probs=136.9
Q ss_pred CcceEEEEEeCCCce-----------EeeeeecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCC
Q 000498 1114 NAPKVVECFGSDGHK-----------YRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSA 1182 (1460)
Q Consensus 1114 ~~Pk~i~~~gsdG~~-----------y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs~~~ 1182 (1460)
.+|.-+-+...+|.. |.+|+|. +|||||+.|.|++++|+.+|+++. .+|.+++|+|+|++++.
T Consensus 1026 ~~pv~~p~~~~~gvs~~~~~~~~~q~~~iIyK~--gDLRQDQLVLQmIrLMDrLLKkEn----LDLKLTPYRVLATG~ds 1099 (1374)
T PTZ00303 1026 SAPVTSPVTAVNGVSPESLHDSLPQECMFLYKR--ENVERDQLMCISSRLLQMLLSSEI----GNAEMLDYSVLPLSCDS 1099 (1374)
T ss_pred ccceeeeeeccCCcCccccccccchheeEEEec--CcHHHHHHHHHHHHHHHHHHHhcC----CCccccceEEEeccCCc
Confidence 488888899999987 9999995 699999999999999999999987 89999999999999999
Q ss_pred ceEEEcCCCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHH
Q 000498 1183 GILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFE 1262 (1460)
Q Consensus 1183 GLIE~v~~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w~~ 1262 (1460)
|+||+|++ .+|.+|... . +.+||. +.++.
T Consensus 1100 GLIEfVps-~tLAsI~~~--------------------------------~------------Il~YLr--~~~t~---- 1128 (1374)
T PTZ00303 1100 GLIEKAEG-RELSNLDNM--------------------------------D------------IASYVL--YRGTR---- 1128 (1374)
T ss_pred ccEEEecc-hHHHHhhhh--------------------------------H------------HHHHHH--hcCcH----
Confidence 99999997 456654310 0 112222 22222
Q ss_pred HHHHHHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccCCCCCCCCCcccchhhhhccccc
Q 000498 1263 KRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVT 1336 (1460)
Q Consensus 1263 ~R~~ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~ 1336 (1460)
...||++|+|.||+++||||+||||++||||+. +|.+||||||++|+....-+.+-+.|.|+-.+|..++|.+
T Consensus 1129 ~~~NFi~S~AGYsViTYILgIgDRHngNILId~-dGhLfHIDFGFILg~rtfkeKl~~s~vR~D~~l~eav~~~ 1201 (1374)
T PTZ00303 1129 SCINFLASAKLFLLLNYIFSIGDRHKGNVLIGT-NGALLHIDFRFIFSEKTFVEKLARSTVRIDDAFLAAVEQC 1201 (1374)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccCCceeEcC-CCCEEEEecceeecCchhhhccCCCceehhHHHHHHHHHH
Confidence 246999999999999999999999999999996 9999999999999976544556677999999998777643
No 37
>PF02260 FATC: FATC domain; InterPro: IPR003152 The FATC domain is found at the C-terminal end of the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding; PDB: 2KIT_A 1W1N_A 2KIO_A.
Probab=99.34 E-value=1.9e-13 Score=104.30 Aligned_cols=32 Identities=44% Similarity=0.794 Sum_probs=27.7
Q ss_pred CcCHHHHHHHHHHHhcCchhhhhhCcccccCC
Q 000498 1429 MRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1460 (1460)
Q Consensus 1429 ~lsv~~qV~~LI~~Atd~~nL~~m~~gW~Pwl 1460 (1460)
++||++||++||++|||++|||+||+||+|||
T Consensus 2 ~lsv~~qV~~LI~~At~~~nLa~my~GW~pw~ 33 (33)
T PF02260_consen 2 PLSVEQQVDELISEATDPENLARMYIGWMPWW 33 (33)
T ss_dssp -S-STHHHHHHHHHHHHHHHHHHHCTSS-TT-
T ss_pred CCCHHHHHHHHHHHHcCHHHHHHHhcchhccC
Confidence 68999999999999999999999999999997
No 38
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.94 E-value=5.1e-10 Score=150.84 Aligned_cols=242 Identities=7% Similarity=-0.162 Sum_probs=173.1
Q ss_pred ecCCCcceEEEEEeCCCceEeeeeecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceEEEcC
Q 000498 1110 MNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVD 1189 (1460)
Q Consensus 1110 ~~s~~~Pk~i~~~gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~ 1189 (1460)
..+...|+..+..++++...+...| +.+++|+++.+++. +...++.|++.|-..+|+++++....+|-+|+.
T Consensus 2172 ~~~~~~~~~sse~et~~~l~k~~~~-~~~~~~er~~q~~~-------~~~~~~~rq~~lDe~~l~~l~~~r~~fL~~Alt 2243 (2806)
T KOG0892|consen 2172 YQEDEERRSSSEFETLKDLQKLERS-TVEASNEREEQMRK-------NHHVRVQRQLILDEEELLALSEDRSKFLTLALT 2243 (2806)
T ss_pred hhhHHHHHhHHHHhhHHHHHHHHHh-hhhhhHHHHHHHHH-------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 3667778888889999877766666 67999999999886 333445566788899999999999999999999
Q ss_pred CCCchHHHhhhhccCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHH---HcCCchHHHHHHHH
Q 000498 1190 GTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLE---RFLQPAYWFEKRLA 1266 (1460)
Q Consensus 1190 ~t~sl~~il~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~---~f~~~~~w~~~R~~ 1266 (1460)
|+....+.-... ..+.+.|+.+..+....|.+.+.. -+.+++..=+-+|.|+++++.-+ .+.++-.|...+..
T Consensus 2244 ~Yl~cl~~~~~~--D~~~i~R~cslWfsns~~~evn~~--mk~~i~~ipsyKFip~~yQlAaRl~~~~~~~fq~~L~~Li 2319 (2806)
T KOG0892|consen 2244 NYLNCLSESDEY--DVDLIFRCCSLWFSNSHLKEVNNS--LKHEIQTVPSYKFIPLVYQLAARLGNSENNSFQKSLTSLI 2319 (2806)
T ss_pred hHHHHHhhcccc--cHHHHHHHhhhhccccchHHHHHH--HHHHhccCCcchhHHHHHHHHHHhccccCchHHHHHHHHH
Confidence 977765433211 011223332222222222111111 12222222245778877765432 45678899999999
Q ss_pred HHHhhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccCCCCCCCCCcccchhhhhccccccccchhHHHH
Q 000498 1267 YTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCC 1346 (1460)
Q Consensus 1267 ft~S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~Fr~~~ 1346 (1460)
|..+.+.-.-..|+|+.+++|--+. .-+-.|.+ | ++.+++||++|+...++++++.++.++++.|+
T Consensus 2320 ~r~~~dhPyhtly~L~~L~~~~rd~-----e~~n~sr~-------s--l~~~rki~a~l~~~~v~~~~~~~v~~v~~lc~ 2385 (2806)
T KOG0892|consen 2320 YRVGRDHPYHTLYQLLSLVNAVRDN-----EDENRSRG-------S--IDRDRKIAAELDLCDVNQGAGNMVRQLECLCE 2385 (2806)
T ss_pred HHHhccCchHHHHHHHHHHhcCcCh-----hhhhhccc-------c--cchhHHHHHHHhhhHhhccchhHHHHHHHHHH
Confidence 9999999999999999999887761 11122222 2 77899999999999999999999999999999
Q ss_pred HHHHHHHhcChHHHHHHHHHHccCCCcccccC
Q 000498 1347 EKTLSVMRTNKEALLTIVEVFIHDPLYKWALS 1378 (1460)
Q Consensus 1347 ~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~~ 1378 (1460)
+.+.-+. .......++.+....++...|...
T Consensus 2386 ~yI~lAn-l~~~q~~t~~k~v~~p~~~~~~K~ 2416 (2806)
T KOG0892|consen 2386 AYISLAN-LKTSQNDTTSKLVRLPGYQWFLKQ 2416 (2806)
T ss_pred HHHHHhc-CcccccchhhhhhcCccccHHHhh
Confidence 9998888 666778888898888888888753
No 39
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.47 E-value=2 Score=57.43 Aligned_cols=318 Identities=13% Similarity=0.036 Sum_probs=154.9
Q ss_pred HHHHHHHHHhchhhHHhhhhHhHhHHhhccccCCCCCCCcCCCcchHHHHHHHHHhhcCCchhhhhhhcc-----c----
Q 000498 336 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H---- 406 (1460)
Q Consensus 336 ~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdEPD~~yGi~~~-----~---- 406 (1460)
..++..-..++-|..|+-+++...+.. ...+.....|..+|...++++.+.-+... +
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 636 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAA--------------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL 636 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 345555666666666666666533210 11234456677777777777766555321 1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhhhhh
Q 000498 407 KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMH 486 (1460)
Q Consensus 407 ~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~lG~~~ 486 (1460)
.......-|+..|+|++|+.+|+..+... |+ +.....++.+++...|.++
T Consensus 637 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------------~~-------------~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRALELK-----------------PD-------------NTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------CC-------------CHHHHHHHHHHHHHcCCHH
Confidence 12234467788888888888888877753 22 1224567788888888777
Q ss_pred HHHHhhhccccccCCCCCCcchhHHHHHHHHhcCCCCCcccccCCCCCCCcCcccchhhhhHHHHHHHHhcCChHHHHHH
Q 000498 487 VLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRK 566 (1460)
Q Consensus 487 ~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~~~~~~~~~~f~~~L~~~L~Al~~~d~~~~~~~ 566 (1460)
....+.+.+.... ...+........+..+.|+|+.-..+. ..... ..++...+ ..+ +....+.|+.+++...
T Consensus 687 ~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~-~~~~~-~~~~~~~~-~~l--~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 687 SAKKIAKSLQKQH---PKAALGFELEGDLYLRQKDYPAAIQAY-RKALK-RAPSSQNA-IKL--HRALLASGNTAEAVKT 758 (899)
T ss_pred HHHHHHHHHHhhC---cCChHHHHHHHHHHHHCCCHHHHHHHH-HHHHh-hCCCchHH-HHH--HHHHHHCCCHHHHHHH
Confidence 7655555443321 112223334455667778887432211 00000 00111111 112 2223345777777766
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHH-HHHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHHHHH
Q 000498 567 LKHSKQELVLSVACASEESTEYIYSAIVK-LQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEW 645 (1460)
Q Consensus 567 i~~aR~~l~~~Ls~~s~ES~~~~y~~lvr-Lq~L~ELe~i~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W 645 (1460)
++++...- . .+. .++..+.. ...+.+.+++.+...+.. . ..| . .......-.|
T Consensus 759 ~~~~l~~~-------~-~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~--------~-----~~p---~-~~~~~~~l~~ 812 (899)
T TIGR02917 759 LEAWLKTH-------P-NDA-VLRTALAELYLAQKDYDKAIKHYRTVV--------K-----KAP---D-NAVVLNNLAW 812 (899)
T ss_pred HHHHHHhC-------C-CCH-HHHHHHHHHHHHCcCHHHHHHHHHHHH--------H-----hCC---C-CHHHHHHHHH
Confidence 66543320 1 111 11111111 112233333332110000 0 001 0 0000011112
Q ss_pred HHHHHhhhcchhhhhhhhHHHHHHHHhcccchHHHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHh
Q 000498 646 SSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGR 725 (1460)
Q Consensus 646 ~~rl~~~~~~~~~~EpiL~~R~~vl~il~~~~~~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~ 725 (1460)
--... .+ -+.+-.+++.+ .+ .......|...+.+....|++..|...+.++..+.. .+..+.
T Consensus 813 ~~~~~---~~---~~A~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~--------~~~~~~ 874 (899)
T TIGR02917 813 LYLEL---KD---PRALEYAEKAL-KL---APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP--------EAAAIR 874 (899)
T ss_pred HHHhc---Cc---HHHHHHHHHHH-hh---CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------CChHHH
Confidence 11111 01 11111111111 11 111233456678888899999999998877654421 122345
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q 000498 726 LEEAKLLRAQGQHEMAINLAKYIS 749 (1460)
Q Consensus 726 lE~Ak~LWa~Ge~~~AI~~Lk~l~ 749 (1460)
+..|..+|+.|+...|+.+++.++
T Consensus 875 ~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 875 YHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 678999999999999999998765
No 40
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=94.07 E-value=30 Score=46.23 Aligned_cols=96 Identities=17% Similarity=0.071 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhH
Q 000498 681 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPD 760 (1460)
Q Consensus 681 ~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~l~~~~~~~~~~a~ 760 (1460)
..+...+...++.|+...|...+.++.... |.+..+.+..|.++...|+...|+..++.+++..+. .+.
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~ 805 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTH--------PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD---NAV 805 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC---CHH
Confidence 456677888889999998888877654431 112234567788888999999999999888765432 233
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHhhhhhhhc
Q 000498 761 VYRLVGKWLAESRSSNSRIILENYLKPAVSF 791 (1460)
Q Consensus 761 ll~llG~Wlaetr~e~~~~I~~~Y~~~a~~l 791 (1460)
++..+|.-...... +. -..|++.++.+
T Consensus 806 ~~~~l~~~~~~~~~--~~--A~~~~~~~~~~ 832 (899)
T TIGR02917 806 VLNNLAWLYLELKD--PR--ALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHhcCc--HH--HHHHHHHHHhh
Confidence 44444444333222 33 23455556543
No 41
>PLN03218 maturation of RBCL 1; Provisional
Probab=89.86 E-value=57 Score=45.44 Aligned_cols=81 Identities=16% Similarity=0.260 Sum_probs=53.9
Q ss_pred hHHHHHHHHHhhcCCchhhhhhhcc-------c---chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCC
Q 000498 381 RHIEILVSAVTQINEPDSLYGIIQS-------H---KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPH 450 (1460)
Q Consensus 381 ~~~e~L~~Iy~~IdEPD~~yGi~~~-------~---~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~ 450 (1460)
.....|+..|.+.++.|.+..+... + +....|.-|-+.|++++|+..|+.-.+.+
T Consensus 473 ~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G--------------- 537 (1060)
T PLN03218 473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN--------------- 537 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC---------------
Confidence 4567788888888888877776531 1 23467788888888888888887765543
Q ss_pred CCCccCCCCCchhhhhhccchhhHHHHHHHhhhhhhHHHH
Q 000498 451 GLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDM 490 (1460)
Q Consensus 451 ~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~lG~~~~L~~ 490 (1460)
..|+ ...+..+++++-..|..+....
T Consensus 538 v~PD--------------~vTYnsLI~a~~k~G~~deA~~ 563 (1060)
T PLN03218 538 VKPD--------------RVVFNALISACGQSGAVDRAFD 563 (1060)
T ss_pred CCCC--------------HHHHHHHHHHHHHCCCHHHHHH
Confidence 2244 1235677888777776655433
No 42
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=88.38 E-value=52 Score=43.77 Aligned_cols=290 Identities=11% Similarity=0.049 Sum_probs=144.1
Q ss_pred hHHHHHHHHHhhcCCchhhhhhhccc------chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCc
Q 000498 381 RHIEILVSAVTQINEPDSLYGIIQSH------KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPS 454 (1460)
Q Consensus 381 ~~~e~L~~Iy~~IdEPD~~yGi~~~~------~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~ 454 (1460)
.....|++.|.+-++.|.+..+.... .....|.-|.+.|++++|+..|+.-.+.+ ..|+
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g---------------~~pd 324 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG---------------VSID 324 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------------CCCC
Confidence 34578999999999999998887521 34578899999999999999998765543 2355
Q ss_pred cCCCCCchhhhhhccchhhHHHHHHHhhhhhhHHHHhhhccccccCCCCCCcchhHHHHHHHHhcCCCCCcccccCCCCC
Q 000498 455 VHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFP 534 (1460)
Q Consensus 455 ~~~~~~~~e~~~~~~~~~~GlmrcL~~lG~~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~ 534 (1460)
. ..+..+++++-.+|..+......+.+.... ...+......-..+--+.|+++....+ ... +
T Consensus 325 --------~------~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g--~~~d~~~~~~Li~~y~k~G~~~~A~~v-f~~-m 386 (697)
T PLN03081 325 --------Q------FTFSIMIRIFSRLALLEHAKQAHAGLIRTG--FPLDIVANTALVDLYSKWGRMEDARNV-FDR-M 386 (697)
T ss_pred --------H------HHHHHHHHHHHhccchHHHHHHHHHHHHhC--CCCCeeehHHHHHHHHHCCCHHHHHHH-HHh-C
Confidence 1 135678888888887654432222211111 111111111223333445555432221 111 1
Q ss_pred CCcCcccchhhhhHHHHHHHH-hcCChHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH-HHHHhHHHHHHHhhhhc
Q 000498 535 SGQNIKSGHFHENLHSCLTAL-REGDSEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVK-LQILCHLGVAWDIRWKS 612 (1460)
Q Consensus 535 ~~~~~~~~~f~~~L~~~L~Al-~~~d~~~~~~~i~~aR~~l~~~Ls~~s~ES~~~~y~~lvr-Lq~L~ELe~i~el~~~~ 612 (1460)
. .++...|+..+ .+. +.|+.+++.+..+..... .+ .--...|..++. +-....+++..++...+
T Consensus 387 ~--~~d~~t~n~lI----~~y~~~G~~~~A~~lf~~M~~~---g~-----~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 387 P--RKNLISWNALI----AGYGNHGRGTKAVEMFERMIAE---GV-----APNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred C--CCCeeeHHHHH----HHHHHcCCHHHHHHHHHHHHHh---CC-----CCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 1 12333454322 222 568888888877765432 11 111111333332 11112222222221111
Q ss_pred cCCccccccccccccCCCCCcchhhhhHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHhcccchHHHHHHHHHHHHHHh
Q 000498 613 SGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRK 692 (1460)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~~~~~~~~~EpiL~~R~~vl~il~~~~~~~~~wl~~a~laRk 692 (1460)
..+ ..+.|.. ..+...+...-+.-.+-|. ... ++-.+. .....+|-.....|++
T Consensus 453 ~~~-------------~g~~p~~-------~~y~~li~~l~r~G~~~eA----~~~-~~~~~~-~p~~~~~~~Ll~a~~~ 506 (697)
T PLN03081 453 SEN-------------HRIKPRA-------MHYACMIELLGREGLLDEA----YAM-IRRAPF-KPTVNMWAALLTACRI 506 (697)
T ss_pred HHh-------------cCCCCCc-------cchHhHHHHHHhcCCHHHH----HHH-HHHCCC-CCCHHHHHHHHHHHHH
Confidence 000 0000110 0111111111110000011 001 111111 1234568777889999
Q ss_pred cCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhh
Q 000498 693 GFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISEN 751 (1460)
Q Consensus 693 ag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~l~~~ 751 (1460)
.|+++.|..+..++..+.+. +.....-.++.+=..|+.+.|.++++.+..+
T Consensus 507 ~g~~~~a~~~~~~l~~~~p~--------~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 507 HKNLELGRLAAEKLYGMGPE--------KLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred cCCcHHHHHHHHHHhCCCCC--------CCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999887776544321 1111233466777889999999988777654
No 43
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=87.92 E-value=93 Score=41.17 Aligned_cols=115 Identities=7% Similarity=-0.006 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHhchhhHHhhhhHhHhHHhhccccCCCCCCCcCCCcchHHHHHHHHHhhcCCchhhhhhhcc-----c-c
Q 000498 334 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-K 407 (1460)
Q Consensus 334 d~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdEPD~~yGi~~~-----~-~ 407 (1460)
+...++.+..+-|-+..|+-.++...... | ..++.+..|.-..-..+++|.+.-.... + .
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--------p------~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~ 109 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA--------K------NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ 109 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC--------C------CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC
Confidence 56778888899999999988888754332 1 1233445555566667777766655431 1 1
Q ss_pred ---hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhhh
Q 000498 408 ---LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGC 484 (1460)
Q Consensus 408 ---l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~lG~ 484 (1460)
......-|...|++++|+..|+..++.. |+ +...+..+.+++..+|.
T Consensus 110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-----------------P~-------------~~~a~~~la~~l~~~g~ 159 (656)
T PRK15174 110 PEDVLLVASVLLKSKQYATVADLAEQAWLAF-----------------SG-------------NSQIFALHLRTLVLMDK 159 (656)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------CC-------------cHHHHHHHHHHHHHCCC
Confidence 2234567888999999999999998864 33 12245677888999998
Q ss_pred hhHHHHhh
Q 000498 485 MHVLDMYC 492 (1460)
Q Consensus 485 ~~~L~~~~ 492 (1460)
.+....+.
T Consensus 160 ~~eA~~~~ 167 (656)
T PRK15174 160 ELQAISLA 167 (656)
T ss_pred hHHHHHHH
Confidence 76654433
No 44
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=87.87 E-value=1 Score=49.33 Aligned_cols=94 Identities=14% Similarity=0.186 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhhcCCccc---hhHHHHHHHhccc------------hHHHHHHHHHhhccccccchhhhhhhhhccccCC
Q 000498 895 GLALEGYKRCLVIGDKYD---VFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 959 (1460)
Q Consensus 895 ~~Al~~Yl~sL~~~~~~d---v~RllsLWf~~~~------------~~~v~~~~~~~l~~iPs~kfl~~lpQL~sRl~~~ 959 (1460)
..|+.-|++|+.+++... +..++.-|=..+- ++.|.....+.+.+.|...+...+|||+.-|...
T Consensus 43 p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~aL~LL~~~~~~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQaLr~E 122 (184)
T smart00145 43 PKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPEDALELLSPKFPDPFVRAYAVERLESASDEELLLYLLQLVQALKYE 122 (184)
T ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHHHHHhCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcc
Confidence 468888999998888764 8888888865432 4567777889999999999999999999999875
Q ss_pred ccccccccHHHHHHHHHHHHHHhCCh---hhhhHHhhc
Q 000498 960 KDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLAL 994 (1460)
Q Consensus 960 ~~~~~~~~f~~~L~~Ll~~i~~~hP~---~~l~~l~~~ 994 (1460)
. .-...|..+|.+.|...|. +.+|.|.+-
T Consensus 123 ~------~~~~~L~~fLl~ra~~s~~~~~~l~W~L~~e 154 (184)
T smart00145 123 P------YLDSALARFLLERALKNQRLGHFFYWYLKSE 154 (184)
T ss_pred c------ccccHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 2 1235799999999999886 455666543
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=86.61 E-value=61 Score=39.98 Aligned_cols=59 Identities=14% Similarity=-0.118 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHH
Q 000498 680 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKY 747 (1460)
Q Consensus 680 ~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~ 747 (1460)
....+-.+++|-..|.+..|...+..+.... |.+ ...++.|.+++..|+++.|.++-+.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--------P~~-~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQR--------PDA-YDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455677999999999999999988765432 111 2247899999999999999887754
No 46
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=82.99 E-value=1.3 Score=47.71 Aligned_cols=91 Identities=14% Similarity=0.222 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhhcCCccc---hhHHHHHHHhccc------------hHHHHHHHHHhhccccccchhhhhhhhhccccCC
Q 000498 895 GLALEGYKRCLVIGDKYD---VFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 959 (1460)
Q Consensus 895 ~~Al~~Yl~sL~~~~~~d---v~RllsLWf~~~~------------~~~v~~~~~~~l~~iPs~kfl~~lpQL~sRl~~~ 959 (1460)
..|+.-|++|+.+.+... +..++.-|-..+. +..|.+...+.+...+...+...+|||+..|...
T Consensus 45 p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~aLeLL~~~f~~~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE 124 (166)
T cd00870 45 KKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIEDALELLSPYFTNPVVRKYAVSRLKLASDEELLLYLLQLVQALKYE 124 (166)
T ss_pred cHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHcCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 468888999998877643 7888888865432 3567788889999999999999999999999985
Q ss_pred ccc-cccccHHHHHHHHHHHHHHhCCh
Q 000498 960 KDA-LGLHNFQFALVSLVKKMAIDHPY 985 (1460)
Q Consensus 960 ~~~-~~~~~f~~~L~~Ll~~i~~~hP~ 985 (1460)
... .+.......|..+|.+.|...|.
T Consensus 125 ~~~~~~~~~~~s~La~fLl~Ral~s~~ 151 (166)
T cd00870 125 NLDLSPLPRLDSPLADFLIERALKNPK 151 (166)
T ss_pred ccccccccccccHHHHHHHHHHhcCHH
Confidence 320 00001346799999999999886
No 47
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=82.58 E-value=1.1 Score=48.44 Aligned_cols=85 Identities=15% Similarity=0.235 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhhcCCccc---hhHHHHHHHhccc------------hHHHHHHHHHhhccccccchhhhhhhhhccccCC
Q 000498 895 GLALEGYKRCLVIGDKYD---VFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 959 (1460)
Q Consensus 895 ~~Al~~Yl~sL~~~~~~d---v~RllsLWf~~~~------------~~~v~~~~~~~l~~iPs~kfl~~lpQL~sRl~~~ 959 (1460)
..|+..+++|+.+.+... +..++.-|=..+. ++.|.+...+.++++|...+...+|||+.-|...
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aLeLL~~~f~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE 117 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQALELLDCNFPDEHVREFAVRCLEKLSDDELLQYLLQLVQVLKYE 117 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcc
Confidence 468889999998887754 7888888865432 3567788889999999999999999999999985
Q ss_pred ccccccccHHHHHHHHHHHHHHhCCh
Q 000498 960 KDALGLHNFQFALVSLVKKMAIDHPY 985 (1460)
Q Consensus 960 ~~~~~~~~f~~~L~~Ll~~i~~~hP~ 985 (1460)
. .....|..+|.+.|...|.
T Consensus 118 ~------~~ds~La~FLl~Ral~n~~ 137 (171)
T cd00872 118 P------YHDSDLVRFLLKRALRNQR 137 (171)
T ss_pred c------ccCCHHHHHHHHHHhcCHH
Confidence 3 1235799999999999886
No 48
>PF13575 DUF4135: Domain of unknown function (DUF4135)
Probab=80.70 E-value=7.6 Score=47.45 Aligned_cols=112 Identities=21% Similarity=0.194 Sum_probs=83.6
Q ss_pred eCCCceEeeeeecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceEEEcCCCCchHHHhhhhc
Q 000498 1123 GSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGST 1202 (1460)
Q Consensus 1123 gsdG~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~il~~~~ 1202 (1460)
-++|+ +++.|+ -+++.|..+..|+..+|.-... -.+.++++++++-+..-|-.|||++..- .
T Consensus 67 f~~g~--kivYKP--Rsl~~d~~f~~l~~~ln~~~~~------~~~~l~~~~~l~~g~~YgW~EfI~~~~c-~------- 128 (370)
T PF13575_consen 67 FSSGK--KIVYKP--RSLSIDKAFNDLLEWLNEKNGT------PSLDLPTPKVLDRGDGYGWQEFIEHEPC-N------- 128 (370)
T ss_pred ECCCC--EEEEeC--cccHHHHHHHHHHHHHhhhccc------cccccccceeeeccCcceeEEEecCCCC-C-------
Confidence 33553 567886 6899999999999999986432 1366888899998877999999986211 0
Q ss_pred cCCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheec
Q 000498 1203 RNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVG 1282 (1460)
Q Consensus 1203 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyIlg 1282 (1460)
+.. --.+|=+-++....+.|+||
T Consensus 129 ------------------------~~~---------------------------------ev~~yY~r~G~llal~y~L~ 151 (370)
T PF13575_consen 129 ------------------------SEE---------------------------------EVERYYYRLGVLLALLYLLN 151 (370)
T ss_pred ------------------------CHH---------------------------------HHHHHHHHHHHHHHHHHHhC
Confidence 000 00135566778888999999
Q ss_pred cCCCCCCeeEEecCCCeEEEeecchhhcc
Q 000498 1283 LGDRHAMNILIDQATAEVVHIDLGVAFEQ 1311 (1460)
Q Consensus 1283 LGDRH~~NILld~~tG~vvhIDfg~~f~~ 1311 (1460)
..|-|-+||.-+ -+..|=||+-..|..
T Consensus 152 ~~DlH~ENIIa~--g~~PvlIDlETlf~~ 178 (370)
T PF13575_consen 152 GTDLHFENIIAS--GEYPVLIDLETLFHP 178 (370)
T ss_pred CCcccccceEEe--CCCcEEEehhhhCCc
Confidence 999999999997 478899999888864
No 49
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=80.46 E-value=3.3 Score=44.07 Aligned_cols=91 Identities=14% Similarity=0.220 Sum_probs=68.9
Q ss_pred HHHHHHHHHhhcCCccc---hhHHHHHHHhcc------------chHHHHHHHHHhhccccccchhhhhhhhhccccCCc
Q 000498 896 LALEGYKRCLVIGDKYD---VFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTK 960 (1460)
Q Consensus 896 ~Al~~Yl~sL~~~~~~d---v~RllsLWf~~~------------~~~~v~~~~~~~l~~iPs~kfl~~lpQL~sRl~~~~ 960 (1460)
.++.-+++|+...+..+ +..++.-|=..+ .++.|.....+.+.+.|.......+|||+.-|..+.
T Consensus 39 ~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~aL~LL~~~~~~~~vr~yAv~~L~~~~~~~l~~ylpQLVQaLkye~ 118 (152)
T cd00864 39 KALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPEDALELLSPKYPDPVVRQYAVRVLESASDDELLLYLPQLVQALKYEP 118 (152)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHHHHHHcCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 57888889988866544 777777774432 235677888899999999999999999999998753
Q ss_pred cccccccHHHHHHHHHHHHHHhCCh---hhhhHHh
Q 000498 961 DALGLHNFQFALVSLVKKMAIDHPY---HTIFQLL 992 (1460)
Q Consensus 961 ~~~~~~~f~~~L~~Ll~~i~~~hP~---~~l~~l~ 992 (1460)
. ....|..+|.+.|...|. +.+|.|.
T Consensus 119 ~------~~~~L~~fLl~ra~~s~~~~~~l~W~L~ 147 (152)
T cd00864 119 Y------LDSYLARFLLERALKSQRLGHQLYWNLK 147 (152)
T ss_pred c------CCCHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1 135799999999999986 3345443
No 50
>PLN03218 maturation of RBCL 1; Provisional
Probab=78.75 E-value=1.4e+02 Score=41.82 Aligned_cols=299 Identities=13% Similarity=0.143 Sum_probs=155.8
Q ss_pred cCHHHHHHHHHHhchhhHHhhhhHhHhHHhhccccCCCCCCCcCCCcchHHHHHHHHHhhcCCchhhhhhhcc-------
Q 000498 333 VDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS------- 405 (1460)
Q Consensus 333 Id~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdEPD~~yGi~~~------- 405 (1460)
+-|..+-.+..+||.+..|+-.++.-.+. + ..+.......|+..|.+.++.|.+..+...
T Consensus 473 ~tynsLI~~y~k~G~vd~A~~vf~eM~~~-------G------v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 473 KLYTTLISTCAKSGKVDAMFEVFHEMVNA-------G------VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHc-------C------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 34667888888999999999877753211 0 112244578999999999999998877531
Q ss_pred c---chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhh
Q 000498 406 H---KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQV 482 (1460)
Q Consensus 406 ~---~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~l 482 (1460)
+ .....|.-|-+.|++++|+..|+.-...... ..|+ ...+.-++.++-..
T Consensus 540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-------------i~PD--------------~vTynaLI~ay~k~ 592 (1060)
T PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP-------------IDPD--------------HITVGALMKACANA 592 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC-------------CCCc--------------HHHHHHHHHHHHHC
Confidence 1 3457889999999999999999887653210 2244 11346788888888
Q ss_pred hhhhHHHHhhhccccccCCCCCCcchhHHHHHHHHhcCCCCCcccccCCCCC-CCcCcccchhhhhHHHHHHHHhcCChH
Q 000498 483 GCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFP-SGQNIKSGHFHENLHSCLTALREGDSE 561 (1460)
Q Consensus 483 G~~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~~-~~~~~~~~~f~~~L~~~L~Al~~~d~~ 561 (1460)
|.++......+.+.... .............+-=+.|+++....+- .... ....++...|+..+ .+ ..+.|+.+
T Consensus 593 G~ldeA~elf~~M~e~g--i~p~~~tynsLI~ay~k~G~~deAl~lf-~eM~~~Gv~PD~~TynsLI-~a--~~k~G~~e 666 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYN--IKGTPEVYTIAVNSCSQKGDWDFALSIY-DDMKKKGVKPDEVFFSALV-DV--AGHAGDLD 666 (1060)
T ss_pred CCHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHH-HH--HHhCCCHH
Confidence 88776544444332211 1111111112233334566665432211 0000 01122333343222 11 22567888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH-HHHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhH
Q 000498 562 EFYRKLKHSKQELVLSVACASEESTEYIYSAIVK-LQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSW 640 (1460)
Q Consensus 562 ~~~~~i~~aR~~l~~~Ls~~s~ES~~~~y~~lvr-Lq~L~ELe~i~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (1460)
.+.+.++.++.. ........|.+++. +-....++++.++...+.. . .+.|+
T Consensus 667 eA~~l~~eM~k~--------G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~--------~------g~~Pd------ 718 (1060)
T PLN03218 667 KAFEILQDARKQ--------GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS--------I------KLRPT------ 718 (1060)
T ss_pred HHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------c------CCCCC------
Confidence 887777765432 11111223444432 1112233333332111100 0 00111
Q ss_pred HHHHHHHHHHhhhcchhhhhhhhHHHHHHHHhcccchHHHHHHHHHHHHHHhcCChhHHHHHHHHHhhh
Q 000498 641 LNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFL 709 (1460)
Q Consensus 641 l~~~W~~rl~~~~~~~~~~EpiL~~R~~vl~il~~~~~~~~~wl~~a~laRkag~~~~A~~aL~~l~~l 709 (1460)
..+|...+...-..-.+-+.+--++...-.=+.+...+...++ ..|.+.|++..|...+.++...
T Consensus 719 -vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL---~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 719 -VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL---VASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHc
Confidence 1457777776544333333333333221110122333344443 6788899999999988887653
No 51
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=76.56 E-value=3.5e+02 Score=38.41 Aligned_cols=114 Identities=22% Similarity=0.294 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhchhhHHhhhhHhHhHHhhccccCCCCCCCcCCCcchHHHHHHHHHhhcCCchhhhhhhccc--------
Q 000498 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH-------- 406 (1460)
Q Consensus 335 ~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdEPD~~yGi~~~~-------- 406 (1460)
+..+|......+-|..|+-+.+..+... |+ .......|..+|.. +++|.+.......
T Consensus 388 ~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--------p~------~~~a~~~L~~l~~~-~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 388 VLGLGDVAMARKDYAAAERYYQQALRMD--------PG------NTNAVRGLANLYRQ-QSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CC------CHHHHHHHHHHHHh-cCHHHHHHHHHhCCHHHHHHH
Confidence 4467888888999999998888754321 11 12334456666654 3455443332210
Q ss_pred ----------chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHH
Q 000498 407 ----------KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLM 476 (1460)
Q Consensus 407 ----------~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~Glm 476 (1460)
.+..+...|...|++++|+.+|+..++.. |+ +......+.
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-----------------P~-------------~~~~~~~LA 502 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-----------------PG-------------SVWLTYRLA 502 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CC-------------CHHHHHHHH
Confidence 11234567888999999999999999865 33 112345677
Q ss_pred HHHHhhhhhhHHHHhhh
Q 000498 477 RSLQQVGCMHVLDMYCK 493 (1460)
Q Consensus 477 rcL~~lG~~~~L~~~~~ 493 (1460)
+++...|.++......+
T Consensus 503 ~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 503 QDLRQAGQRSQADALMR 519 (1157)
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 78888887766644433
No 52
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=74.64 E-value=1.5e+02 Score=39.18 Aligned_cols=67 Identities=16% Similarity=-0.007 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 000498 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 753 (1460)
Q Consensus 679 ~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~l~~~~~ 753 (1460)
....|...+.++.+.|+++.|...+.++..+.+ ....+..-.+..+...|+...|+..++.++...+
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P--------~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP--------DLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 456778889999999999999998888765422 1223345678999999999999999988876543
No 53
>PLN03077 Protein ECB2; Provisional
Probab=72.77 E-value=3.5e+02 Score=36.98 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhcCCchhhhhhhccc------chhhHHHHHHhhCCHHHHHHHHHHHH
Q 000498 382 HIEILVSAVTQINEPDSLYGIIQSH------KLSSQIVTLEHEGNWSKALEYYELQV 432 (1460)
Q Consensus 382 ~~e~L~~Iy~~IdEPD~~yGi~~~~------~l~~~i~~yE~eg~W~kAL~~Yd~~l 432 (1460)
....|++.|.+.++.|.+.-+.... +....|.-|.+.|++++|+..|+...
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3456666666666666666665311 23456666777777777777766654
No 54
>TIGR02906 spore_CotS spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.
Probab=72.68 E-value=48 Score=38.98 Aligned_cols=31 Identities=26% Similarity=0.106 Sum_probs=26.0
Q ss_pred hhhheeccCCCCCCeeEEecCCCeEEEeecchh
Q 000498 1276 MVGYIVGLGDRHAMNILIDQATAEVVHIDLGVA 1308 (1460)
Q Consensus 1276 ~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~ 1308 (1460)
...+.+.=||=|++||+++. |.+.-|||+.+
T Consensus 184 ~~~~~liHgD~~~~Nil~~~--~~i~lIDfd~~ 214 (313)
T TIGR02906 184 KKIRGFCHQDYAYHNILLKD--NEVYVIDFDYC 214 (313)
T ss_pred cCcCceEcCCCCcccEEEeC--CcEEEEECccc
Confidence 34577889999999999996 78999999954
No 55
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=71.89 E-value=1.7e+02 Score=38.94 Aligned_cols=282 Identities=11% Similarity=0.050 Sum_probs=151.9
Q ss_pred HHHHHHHHHHhchhhHHhhhhHhHhHHhhccccCCCCCCCcCCCcchHHHHHHHHHhhcCCchhhhhhhcc---------
Q 000498 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS--------- 405 (1460)
Q Consensus 335 ~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdEPD~~yGi~~~--------- 405 (1460)
+..+..+-.+||-+..|...++.- . .+.......|+..|.+-+++|.+..+...
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m----------~-------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGM----------P-------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC----------C-------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 456677778899999998877641 0 11233467899999999999998877531
Q ss_pred -cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhhh
Q 000498 406 -HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGC 484 (1460)
Q Consensus 406 -~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~lG~ 484 (1460)
.+....+..|-+.|++++|...|+...+.+ ..|+ ......++..+-..|.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g---------------~~~d--------------~~~~~~Li~~y~k~G~ 375 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTG---------------FPLD--------------IVANTALVDLYSKWGR 375 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhC---------------CCCC--------------eeehHHHHHHHHHCCC
Confidence 135578899999999999999999887754 1233 1245678888888887
Q ss_pred hhHHHHhhhccccccCCCCCCcchhHHHHHHHHhcCCCCCcccccCCCC-CCCcCcccchhhhhHHHHHHHH-hcCChHH
Q 000498 485 MHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANF-PSGQNIKSGHFHENLHSCLTAL-REGDSEE 562 (1460)
Q Consensus 485 ~~~L~~~~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD~~~~~~~~~~-~~~~~~~~~~f~~~L~~~L~Al-~~~d~~~ 562 (1460)
.+......+.+.... -..+. ....+-=+.|+++...... ... .....++...|... |.|. +.|+.++
T Consensus 376 ~~~A~~vf~~m~~~d-----~~t~n-~lI~~y~~~G~~~~A~~lf-~~M~~~g~~Pd~~T~~~l----l~a~~~~g~~~~ 444 (697)
T PLN03081 376 MEDARNVFDRMPRKN-----LISWN-ALIAGYGNHGRGTKAVEMF-ERMIAEGVAPNHVTFLAV----LSACRYSGLSEQ 444 (697)
T ss_pred HHHHHHHHHhCCCCC-----eeeHH-HHHHHHHHcCCHHHHHHHH-HHHHHhCCCCCHHHHHHH----HHHHhcCCcHHH
Confidence 766644444332110 00111 1122222344444221110 000 00112333334332 2333 6678777
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhccCCccccccccccccCCCCCcchhhhhHHH
Q 000498 563 FYRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLN 642 (1460)
Q Consensus 563 ~~~~i~~aR~~l~~~Ls~~s~ES~~~~y~~lvrLq~L~ELe~i~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 642 (1460)
..+..+.....- .+ .-..+.|...=+.+.|...+.|-.++++ +. |..|+ .
T Consensus 445 a~~~f~~m~~~~--g~-~p~~~~y~~li~~l~r~G~~~eA~~~~~---~~-----------------~~~p~-------~ 494 (697)
T PLN03081 445 GWEIFQSMSENH--RI-KPRAMHYACMIELLGREGLLDEAYAMIR---RA-----------------PFKPT-------V 494 (697)
T ss_pred HHHHHHHHHHhc--CC-CCCccchHhHHHHHHhcCCHHHHHHHHH---HC-----------------CCCCC-------H
Confidence 777666544320 01 0112334333333334333443333332 10 11112 1
Q ss_pred HHHHHHHHhhhc--chhhhhhhhHHHHHHHHhcccchHHHHHHHHHHHHHHhcCChhHHHHHHHHHhhh
Q 000498 643 TEWSSILKRTQL--HMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKFL 709 (1460)
Q Consensus 643 ~~W~~rl~~~~~--~~~~~EpiL~~R~~vl~il~~~~~~~~~wl~~a~laRkag~~~~A~~aL~~l~~l 709 (1460)
..|...+..+.. +++.-+- +.-.++.+......++...+++.-++|++..|.+...+++..
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~------~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRL------AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHH------HHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 358888887753 3332221 222222222222334455568888999999999988877653
No 56
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=71.55 E-value=3.6 Score=45.14 Aligned_cols=93 Identities=15% Similarity=0.190 Sum_probs=68.0
Q ss_pred HHHHHHHHHhhcCCccc---hhHHHHHHHhcc------------chHHHHHHHHHhhccccccchhhhhhhhhccccCCc
Q 000498 896 LALEGYKRCLVIGDKYD---VFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTK 960 (1460)
Q Consensus 896 ~Al~~Yl~sL~~~~~~d---v~RllsLWf~~~------------~~~~v~~~~~~~l~~iPs~kfl~~lpQL~sRl~~~~ 960 (1460)
.|+..+++|+.+.+... +..++.-|=..+ .++.|.....+.+.+.|...++..+|||+.-|....
T Consensus 45 ~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~AL~LL~~~f~~~~VR~yAv~~L~~~~d~~l~~yLpQLVQaLr~e~ 124 (184)
T PF00613_consen 45 EALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDALELLSPNFPDPFVRQYAVRRLESLSDEELLFYLPQLVQALRYEP 124 (184)
T ss_dssp GGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHHHHCTSTT---HHHHHHHHHHHCTS-HHHHHHHHHHHHHHGGGSS
T ss_pred hHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHHHHHHHhhccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHheecc
Confidence 47788888888776543 777777776532 235678888899999999999999999999998752
Q ss_pred cccccccHHHHHHHHHHHHHHhCCh---hhhhHHhhc
Q 000498 961 DALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLAL 994 (1460)
Q Consensus 961 ~~~~~~~f~~~L~~Ll~~i~~~hP~---~~l~~l~~~ 994 (1460)
. -...|..+|.+.|...|. +.+|.|.+-
T Consensus 125 ~------~~s~L~~fLl~ra~~s~~ia~~l~W~L~~e 155 (184)
T PF00613_consen 125 Y------HDSPLARFLLRRALKSPRIAHQLFWYLKAE 155 (184)
T ss_dssp S------SS-HHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred c------cccHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 1 225799999999999886 445555543
No 57
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=69.55 E-value=4.9e+02 Score=37.00 Aligned_cols=79 Identities=23% Similarity=0.201 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhHH
Q 000498 682 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDV 761 (1460)
Q Consensus 682 ~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~l~~~~~~~~~~a~l 761 (1460)
.+...+..+...|++..|...+.++..+.+. +..+.+..|.+++.+|+...|+..++.++...+ ..++.
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~--------~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P---~~~~~ 531 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDPG--------SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP---NDPEQ 531 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCHHH
Confidence 4566788899999999999998887655321 223457889999999999999999998876443 23344
Q ss_pred HHHHHHHHHH
Q 000498 762 YRLVGKWLAE 771 (1460)
Q Consensus 762 l~llG~Wlae 771 (1460)
+..+|..+.+
T Consensus 532 ~~a~al~l~~ 541 (1157)
T PRK11447 532 VYAYGLYLSG 541 (1157)
T ss_pred HHHHHHHHHh
Confidence 4445544443
No 58
>PLN03077 Protein ECB2; Provisional
Probab=69.34 E-value=4.3e+02 Score=36.17 Aligned_cols=80 Identities=18% Similarity=0.161 Sum_probs=59.5
Q ss_pred chHHHHHHHHHhhcCCchhhhhhhcc------cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCC
Q 000498 380 PRHIEILVSAVTQINEPDSLYGIIQS------HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLP 453 (1460)
Q Consensus 380 ~~~~e~L~~Iy~~IdEPD~~yGi~~~------~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p 453 (1460)
......|+..|.+.++.|.+..+... .+....|.-|-+.|++++|+..|+.-.+.+ ..|
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g---------------~~P 387 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN---------------VSP 387 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC---------------CCC
Confidence 45578899999999999998888652 135678899999999999999998765543 235
Q ss_pred ccCCCCCchhhhhhccchhhHHHHHHHhhhhhhHH
Q 000498 454 SVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVL 488 (1460)
Q Consensus 454 ~~~~~~~~~e~~~~~~~~~~GlmrcL~~lG~~~~L 488 (1460)
+ + .....++.++-..|..+..
T Consensus 388 d--------~------~t~~~ll~a~~~~g~~~~a 408 (857)
T PLN03077 388 D--------E------ITIASVLSACACLGDLDVG 408 (857)
T ss_pred C--------c------eeHHHHHHHHhccchHHHH
Confidence 5 1 1346778888878865554
No 59
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=68.35 E-value=5.9 Score=43.38 Aligned_cols=48 Identities=27% Similarity=0.324 Sum_probs=35.3
Q ss_pred CCCCCCeeEEecCCCeEEEeecchhhccccCCCCCCCCCcccchhhhhccccccccchhHHHHHHHHHHHhc
Q 000498 1284 GDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRT 1355 (1460)
Q Consensus 1284 GDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~mG~~g~eG~Fr~~~~~t~~~Lr~ 1355 (1460)
+|-||+|||++ +|++.=||||.+-.- +.| ...|.+++-++.++..+|+
T Consensus 142 rDlkP~NIll~--~~~~~liDFG~a~~~----~~~------------------~~~~~~~~~~~~~~~~~~~ 189 (190)
T cd05145 142 GDLSEYNILYH--DGKPYIIDVSQAVEL----DHP------------------NALEFLRRDIRNINRFFRK 189 (190)
T ss_pred CCCChhhEEEE--CCCEEEEEcccceec----CCC------------------CHHHHHHHHHHHHHHHhhc
Confidence 79999999998 799999999986532 111 3455667777777666654
No 60
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=68.25 E-value=24 Score=30.97 Aligned_cols=61 Identities=16% Similarity=-0.008 Sum_probs=46.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 000498 685 ESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 753 (1460)
Q Consensus 685 ~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~l~~~~~ 753 (1460)
..|...-+.|++..|.+.+.++... .|.+..+.+..+.+++.+|+...|+..++..+...+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3577888999999999998887532 233445668899999999999999999988776543
No 61
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=66.15 E-value=13 Score=32.98 Aligned_cols=56 Identities=20% Similarity=-0.011 Sum_probs=42.7
Q ss_pred HhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhccC
Q 000498 691 RKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYES 754 (1460)
Q Consensus 691 Rkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~l~~~~~~ 754 (1460)
-+.|+++.|...+.++.... |.+..+.+..|+.+..+|+.+.|..+++.+....+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 46788999999888775542 223345789999999999999999999888776543
No 62
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=64.48 E-value=7.7 Score=41.93 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhh-cCCccc--hhHHHHHHHhccc------------hHHHHHHHHHhhccccccchhhhhhhhhccccCC
Q 000498 895 GLALEGYKRCLV-IGDKYD--VFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 959 (1460)
Q Consensus 895 ~~Al~~Yl~sL~-~~~~~d--v~RllsLWf~~~~------------~~~v~~~~~~~l~~iPs~kfl~~lpQL~sRl~~~ 959 (1460)
..|+..|++|.. .+++.- +..++.-|=..+. +..|.....+.+.+.+.......+|||+.-|..+
T Consensus 38 p~aLp~~L~s~~~w~~~~~~e~~~LL~~W~p~~p~~ALeLL~~~f~d~~VR~yAV~~L~~~~ddeL~~yLpQLVQaLkyE 117 (169)
T cd00869 38 PNALPLVLASAPSWDWANLMDVYQLLHQWAPLRPLIALELLLPKFPDQEVRAHAVQWLARLSNDELLDYLPQLVQALKFE 117 (169)
T ss_pred cHHHHHHHHhcccCcHHHHHHHHHHHhCCCCCCHHHHHHHcCCcCCChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcc
Confidence 468888888764 333221 6777777755432 3567888889999999999999999999999985
Q ss_pred ccccccccHHHHHHHHHHHHHHhCCh---hhhhHHhh
Q 000498 960 KDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLA 993 (1460)
Q Consensus 960 ~~~~~~~~f~~~L~~Ll~~i~~~hP~---~~l~~l~~ 993 (1460)
.. -...|..+|.+.|...|. +.+|.|.+
T Consensus 118 ~~------~~s~L~~FLl~RAl~n~~i~h~lfW~Lk~ 148 (169)
T cd00869 118 LY------LKSALVRFLLSRSLVSLRFAHELYWLLKD 148 (169)
T ss_pred cc------CcChHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 31 125799999999998886 44555544
No 63
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=62.09 E-value=17 Score=37.14 Aligned_cols=85 Identities=11% Similarity=0.052 Sum_probs=51.2
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhhhhhHHHHh
Q 000498 412 IVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMY 491 (1460)
Q Consensus 412 i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~lG~~~~L~~~ 491 (1460)
...|...|+.++|..+|+..+..+.. +. ...+...++-.+|.++|..+.....
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~---------------~~------------~~~~a~i~lastlr~LG~~deA~~~ 60 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLS---------------GA------------DRRRALIQLASTLRNLGRYDEALAL 60 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC---------------ch------------HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35688899999999999999985411 00 1234567888899999988776444
Q ss_pred hhccccccCCCCCCcchhHHHHHHHHhcCCCC
Q 000498 492 CKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWD 523 (1460)
Q Consensus 492 ~~gl~~~~~~~~~~~~~~~~~~eaAWrlg~WD 523 (1460)
.+......++.+....+..+..-+.+.+|.++
T Consensus 61 L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~ 92 (120)
T PF12688_consen 61 LEEALEEFPDDELNAALRVFLALALYNLGRPK 92 (120)
T ss_pred HHHHHHHCCCccccHHHHHHHHHHHHHCCCHH
Confidence 44332222111222333334444555555554
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.58 E-value=1e+02 Score=36.67 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=63.3
Q ss_pred HHHHHHHHHhchhhHHhhhhHhHhHHhhccccCCCCCCCcCCCcchHHHHHHHHHhhcCCchhhhhhhcc-----c----
Q 000498 336 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H---- 406 (1460)
Q Consensus 336 ~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdEPD~~yGi~~~-----~---- 406 (1460)
..+++.=.+-|||-+|=-++...... -+.++..-+|-.+|..||+|..+--+... +
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---------------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT 291 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---------------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT 291 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---------------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh
Confidence 36788888888888876555442211 13467778999999999999987655431 1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000498 407 KLSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1460)
Q Consensus 407 ~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1460)
-+.-+.+-||-.|+.++|+..|...+...
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~ 320 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVLKLH 320 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 24467799999999999999999998864
No 65
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=61.03 E-value=4e+02 Score=34.89 Aligned_cols=52 Identities=17% Similarity=0.095 Sum_probs=36.9
Q ss_pred HhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHh
Q 000498 691 RKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISE 750 (1460)
Q Consensus 691 Rkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~l~~ 750 (1460)
+..|++..|...+.++..+.. ....+.+..|++++.+|+...|+..++..+.
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p--------~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDP--------ECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445888888888777544421 1222456779999999999999998865543
No 66
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=59.85 E-value=5.4 Score=43.91 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.3
Q ss_pred CCCCCCeeEEecCCCeEEEeecchhhc
Q 000498 1284 GDRHAMNILIDQATAEVVHIDLGVAFE 1310 (1460)
Q Consensus 1284 GDRH~~NILld~~tG~vvhIDfg~~f~ 1310 (1460)
||-+|+|||++ +|++.=||||.+-.
T Consensus 142 rDlkP~NIli~--~~~v~LiDFG~a~~ 166 (190)
T cd05147 142 ADLSEYNLLYH--DGKLYIIDVSQSVE 166 (190)
T ss_pred CCCCHHHEEEE--CCcEEEEEcccccc
Confidence 89999999998 59999999998653
No 67
>KOG3365 consensus NADH:ubiquinone oxidoreductase, NDUFA5/B13 subunit [Energy production and conversion]
Probab=57.59 E-value=6.3 Score=40.33 Aligned_cols=37 Identities=22% Similarity=0.543 Sum_probs=32.2
Q ss_pred HHHHHHhhccCCCCCCCcCHHHHHHHHHHHhcCchhhhhhCcccccC
Q 000498 1413 ALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAW 1459 (1460)
Q Consensus 1413 ~l~rv~~KL~g~~~~~~lsv~~qV~~LI~~Atd~~nL~~m~~gW~Pw 1459 (1460)
.++.++++|.| |||.++|.||-+.=|+.+|-..|.||
T Consensus 93 d~K~ledql~g----------GqIEE~i~qa~~el~m~~k~~~wk~w 129 (145)
T KOG3365|consen 93 DVKKLEDQLQG----------GQIEEVIEQAEAELNMGRKMFEWKPW 129 (145)
T ss_pred HHHHHHHHhcC----------CchHHHHHHHHHHHHHHhhhhccccc
Confidence 45666777766 68999999999999999999999999
No 68
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=54.91 E-value=42 Score=33.75 Aligned_cols=64 Identities=23% Similarity=0.263 Sum_probs=42.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHH--hhcCChHHHHHHhhhhhhhc
Q 000498 727 EEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAE--SRSSNSRIILENYLKPAVSF 791 (1460)
Q Consensus 727 E~Ak~LWa~Ge~~~AI~~Lk~l~~~~~~~~~~a~ll~llG~Wlae--tr~e~~~~I~~~Y~~~a~~l 791 (1460)
|.|+-+|++|++..|+.++++++...........++.+-|.-... ...++|+ +-..|+..+++.
T Consensus 1 e~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d-~k~~yLl~sve~ 66 (111)
T PF04781_consen 1 EKAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPD-VKFRYLLGSVEC 66 (111)
T ss_pred ChHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCch-HHHHHHHHhHHH
Confidence 468999999999999999999987665444434555555554422 2345654 445677666644
No 69
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=54.87 E-value=21 Score=31.61 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=40.3
Q ss_pred hhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhhhhhHHHHhhhccc
Q 000498 417 HEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLT 496 (1460)
Q Consensus 417 ~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~lG~~~~L~~~~~gl~ 496 (1460)
..|+|++|+..|+..++.. |+ +.+...++.+|+-..|.++.....++.+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-----------------p~-------------~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-----------------PD-------------NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-----------------TT-------------SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHC-----------------CC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5799999999999999975 33 22356799999999999998877776654
Q ss_pred cc
Q 000498 497 SW 498 (1460)
Q Consensus 497 ~~ 498 (1460)
..
T Consensus 53 ~~ 54 (68)
T PF14559_consen 53 KQ 54 (68)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 70
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=52.58 E-value=19 Score=28.22 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=20.0
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhh
Q 000498 410 SQIVTLEHEGNWSKALEYYELQVRS 434 (1460)
Q Consensus 410 ~~i~~yE~eg~W~kAL~~Yd~~l~~ 434 (1460)
.....|.+.|+|++|..+|+..+..
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4457899999999999999996653
No 71
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=52.05 E-value=1.4e+02 Score=33.07 Aligned_cols=68 Identities=10% Similarity=-0.159 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHH-HcCC--hHHHHHHHHHHHhhcc
Q 000498 678 FTMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLR-AQGQ--HEMAINLAKYISENYE 753 (1460)
Q Consensus 678 ~~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LW-a~Ge--~~~AI~~Lk~l~~~~~ 753 (1460)
.....|...+.++...|++..|..++.++..+.. .+.......|.+++ ..|+ ...|+.+++..++..+
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P--------~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP 141 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG--------ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA 141 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 4577899999999999999999999988776632 12234567799875 5566 4899999988776543
No 72
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=51.95 E-value=88 Score=35.44 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=22.4
Q ss_pred eeccCCCCCCeeEEecCCCeEEEeecchh
Q 000498 1280 IVGLGDRHAMNILIDQATAEVVHIDLGVA 1308 (1460)
Q Consensus 1280 IlgLGDRH~~NILld~~tG~vvhIDfg~~ 1308 (1460)
++-=||=||.||+++. +| +.=|||+.+
T Consensus 154 ~~~HgD~~~~Nii~~~-~~-~~iIDwe~a 180 (226)
T TIGR02172 154 TCLHGDFQIGNLITSG-KG-TYWIDLGDF 180 (226)
T ss_pred ceEecCCCCCcEEEcC-CC-cEEEechhc
Confidence 3447999999999986 56 999999865
No 73
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.26 E-value=6.8e+02 Score=32.60 Aligned_cols=90 Identities=20% Similarity=0.189 Sum_probs=60.1
Q ss_pred ccCHHHHHHHHHHhchhhHHhhhhHhHhHHhhccccCCCCCCCcCCCcchHHHHHHHHHhhcCCchhhh-hhhccc----
Q 000498 332 SVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLY-GIIQSH---- 406 (1460)
Q Consensus 332 ~Id~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdEPD~~y-Gi~~~~---- 406 (1460)
+.|-+.+|..-.+-|-|..|+-|.-+.. .+ ++ ...+..-+|-.||.+..+-|.-. |.....
T Consensus 48 ~~~~l~lah~~yq~gd~~~a~~h~nmv~----~~----d~------t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~ 113 (966)
T KOG4626|consen 48 SDDRLELAHRLYQGGDYKQAEKHCNMVG----QE----DP------TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP 113 (966)
T ss_pred chhHHHHHHHHHhccCHHHHHHHHhHhh----cc----CC------Ccccceeeehhhhhcccchhhhhhhhhhhhhccc
Confidence 5678999999999999999987766522 11 11 11233445778899988888533 332110
Q ss_pred ----chhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000498 407 ----KLSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1460)
Q Consensus 407 ----~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1460)
.......-|.--|+.++||..|+..++.+
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~ 146 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELK 146 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC
Confidence 12223455667799999999999999965
No 74
>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]
Probab=50.84 E-value=89 Score=34.65 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=25.6
Q ss_pred CCCCCCeeEEecCCCeE--EEeecchhhcc
Q 000498 1284 GDRHAMNILIDQATAEV--VHIDLGVAFEQ 1311 (1460)
Q Consensus 1284 GDRH~~NILld~~tG~v--vhIDfg~~f~~ 1311 (1460)
||-..+||++.+..+++ +-||||..+-+
T Consensus 137 GDLTTSNill~~~~~~~~~~lIdfgls~~s 166 (229)
T KOG3087|consen 137 GDLTTSNILLRSDGNQITPILIDFGLSSVS 166 (229)
T ss_pred ccccccceEEecCCCcCceEEEeecchhcc
Confidence 89999999999999998 99999988754
No 75
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=50.73 E-value=12 Score=39.43 Aligned_cols=30 Identities=23% Similarity=0.148 Sum_probs=25.2
Q ss_pred hheeccCCCCCCeeEEecCCCeEEEeecchhh
Q 000498 1278 GYIVGLGDRHAMNILIDQATAEVVHIDLGVAF 1309 (1460)
Q Consensus 1278 gyIlgLGDRH~~NILld~~tG~vvhIDfg~~f 1309 (1460)
.+.+-=||=||+||+++ .|++.-|||+.+-
T Consensus 106 ~~~~~HgD~~~~Nil~~--~~~~~liDf~~a~ 135 (170)
T cd05151 106 DLVPCHNDLLPGNFLLD--DGRLWLIDWEYAG 135 (170)
T ss_pred CceeecCCCCcCcEEEE--CCeEEEEeccccc
Confidence 55566699999999999 6899999999753
No 76
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=50.52 E-value=10 Score=47.93 Aligned_cols=38 Identities=32% Similarity=0.493 Sum_probs=28.6
Q ss_pred hhhccch--hhheeccCCCCCCeeEEecCCCeEEEeecchhhc
Q 000498 1270 SVAASSM--VGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFE 1310 (1460)
Q Consensus 1270 S~A~~S~--vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~ 1310 (1460)
.||+=|+ +||| =-|--|+|||||+ .|.+=-.|||.|-+
T Consensus 739 tcAiesVHkmGFI--HRDiKPDNILIDr-dGHIKLTDFGLCTG 778 (1034)
T KOG0608|consen 739 TCAIESVHKMGFI--HRDIKPDNILIDR-DGHIKLTDFGLCTG 778 (1034)
T ss_pred HHHHHHHHhccce--ecccCccceEEcc-CCceeeeecccccc
Confidence 4555555 3333 3588899999997 99999999999854
No 77
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=49.80 E-value=14 Score=41.96 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=38.6
Q ss_pred hhhccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccCC
Q 000498 1270 SVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML 1315 (1460)
Q Consensus 1270 S~A~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l 1315 (1460)
.+.-|+++=+++.=.|||..|||..+ +|+++-||=|+||.....|
T Consensus 134 ~l~riaVfDi~inNaDRk~GhiL~~~-dg~l~~IDHGl~f~~~~kl 178 (253)
T TIGR03843 134 QLRRMAVFDALVNNADRKGGHVLPGP-DGRVWGVDHGVCFHVEPKL 178 (253)
T ss_pred HHhhhhhheeeeecCCCCCCcEeEcC-CCcEEEecCceecCCCCcc
Confidence 45567888899999999999999996 8999999999999865434
No 78
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=49.76 E-value=1.2e+02 Score=36.43 Aligned_cols=98 Identities=20% Similarity=0.261 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHhhhcchhhhhhhhHHHHHHH------Hh----------cc---------------cchHHHHHHHHHH
Q 000498 639 SWLNTEWSSILKRTQLHMNLLEPFMAFRRVLL------QI----------LS---------------CKDFTMQHLLESA 687 (1460)
Q Consensus 639 ~~l~~~W~~rl~~~~~~~~~~EpiL~~R~~vl------~i----------l~---------------~~~~~~~~wl~~a 687 (1460)
+.+.+.|.+.+..-..++.+|..+|.+++.=+ .+ |. ..+..+...++.+
T Consensus 82 ~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~ 161 (321)
T PF08424_consen 82 EKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLC 161 (321)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Confidence 34667788877776677888888887775511 11 10 1234566788889
Q ss_pred HHHHhcCChhHHHHHHHHHhhhcCC-CCCCCchhhhhHhHHHHHHHHHcCC
Q 000498 688 STLRKGFRLSQAAAALHELKFLYTG-PGDQCSTVYWLGRLEEAKLLRAQGQ 737 (1460)
Q Consensus 688 ~laRkag~~~~A~~aL~~l~~l~~~-~~~q~~~~~~~a~lE~Ak~LWa~Ge 737 (1460)
...|.+|+...|.+.+..+..+..- +........ ...++.-.-+|+.|.
T Consensus 162 ~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~-~~~~~~fe~FWeS~v 211 (321)
T PF08424_consen 162 RFLRQAGYTERAVALWQALLEFNFFRPESLSSSSF-SERLESFEEFWESEV 211 (321)
T ss_pred HHHHHCCchHHHHHHHHHHHHHHcCCccccccccH-HHHHHHHHHHhCcCC
Confidence 9999999999999876555444321 111111100 145777788998864
No 79
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=49.63 E-value=74 Score=28.43 Aligned_cols=59 Identities=17% Similarity=-0.062 Sum_probs=45.9
Q ss_pred HHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhccC
Q 000498 688 STLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYES 754 (1460)
Q Consensus 688 ~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~l~~~~~~ 754 (1460)
.++...++++.|...+-.+..+.+ .+....+..|..+...|+...|+..++..+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p--------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP--------DDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc--------ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 566788899999988887765532 23345678999999999999999999988866543
No 80
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=49.56 E-value=5.4e+02 Score=30.95 Aligned_cols=95 Identities=22% Similarity=0.145 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhHHH
Q 000498 683 LLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDVY 762 (1460)
Q Consensus 683 wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~l~~~~~~~~~~a~ll 762 (1460)
+...+....+.|++..|...+.++..+.+. ... ..-.++++..+|+.+.|+..++..++..+ ....+.
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~--------~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P---~~~~~~ 319 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPG--------ADL-LLALAQLLEEQEGPEAAQALLREQLRRHP---SLRGFH 319 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------chH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCc---CHHHHH
Confidence 344566777889999999988876554211 111 25678999999999999999988776543 334555
Q ss_pred HHHHHHHHHh---hcCChHHHHHHhhhhhh
Q 000498 763 RLVGKWLAES---RSSNSRIILENYLKPAV 789 (1460)
Q Consensus 763 ~llG~Wlaet---r~e~~~~I~~~Y~~~a~ 789 (1460)
.+++.++... +....-.+++..++..+
T Consensus 320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 320 RLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 5677777644 34444455666665443
No 81
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=49.43 E-value=75 Score=28.09 Aligned_cols=63 Identities=10% Similarity=-0.130 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcC-ChHHHHHHHHHHHh
Q 000498 680 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQG-QHEMAINLAKYISE 750 (1460)
Q Consensus 680 ~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~G-e~~~AI~~Lk~l~~ 750 (1460)
...|...|..+...|++..|.....++..+.+ .+..+.+-.+...+.+| ....|+..++..++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p--------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP--------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST--------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45688889999999999999999988766632 23345677899999999 68999998876554
No 82
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=48.74 E-value=21 Score=27.07 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=24.2
Q ss_pred HHHHHHHhhhcCcchhhchHHHHHHHHhc
Q 000498 94 VLKILKKYLMDDSVQIVDMTSQTLRGILS 122 (1460)
Q Consensus 94 il~~l~~~l~~~~~~~~~~a~~~L~~ils 122 (1460)
||..+.+.+.|++.+|+..|..||..|..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46677888999999999999999998753
No 83
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=48.21 E-value=1.8e+02 Score=28.10 Aligned_cols=84 Identities=19% Similarity=0.114 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhHH
Q 000498 682 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPDV 761 (1460)
Q Consensus 682 ~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~l~~~~~~~~~~a~l 761 (1460)
.+.+.+....+.|++..|...+.++..... .. +....+.+..+.++...|+...|+..++.++...+.......+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYP--KS---TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--Cc---cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH
Confidence 456667788889999999998877654321 11 1111245778999999999999999999988765544444555
Q ss_pred HHHHHHHHH
Q 000498 762 YRLVGKWLA 770 (1460)
Q Consensus 762 l~llG~Wla 770 (1460)
+..+|.-+.
T Consensus 79 ~~~~~~~~~ 87 (119)
T TIGR02795 79 LLKLGMSLQ 87 (119)
T ss_pred HHHHHHHHH
Confidence 555555444
No 84
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=47.37 E-value=25 Score=40.84 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHhchhhHHhhhhHhHhHHhhccccCCCCCCCcCCCcchHHHHHHHHHhhcCCchhhhhhhcc--------
Q 000498 334 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-------- 405 (1460)
Q Consensus 334 d~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdEPD~~yGi~~~-------- 405 (1460)
++..++.. ..=+-|.+|+-++|...++. ..+.....++.+|.+.++.+.+..+...
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~---------------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERD---------------GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAP 143 (280)
T ss_dssp ------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---
T ss_pred cccccccc-cccccccccccccccccccc---------------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC
Confidence 45555555 56788888888888643221 1134455577778888888777777542
Q ss_pred cc---hhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000498 406 HK---LSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1460)
Q Consensus 406 ~~---l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1460)
.+ +-.....|++.|++++|+.+|+..++..
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~ 176 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELD 176 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 11 2345578999999999999999999976
No 85
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=46.06 E-value=24 Score=38.44 Aligned_cols=64 Identities=11% Similarity=0.073 Sum_probs=52.5
Q ss_pred cchHHHHHHHHHhhccccccchhhhhhhhhccccCCccccccccHHHHHHHHHHHHHHhCCh---hhhhHHhhcc
Q 000498 924 SSRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALA 995 (1460)
Q Consensus 924 ~~~~~v~~~~~~~l~~iPs~kfl~~lpQL~sRl~~~~~~~~~~~f~~~L~~Ll~~i~~~hP~---~~l~~l~~~~ 995 (1460)
.+++.|.....+.+.+.|....+..+|||+.-|..... ..|..+|.+.|...+. +.+|.|.+-+
T Consensus 82 ~~~~~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLryd~~--------~~l~~FLl~~A~~s~~faHql~W~lkae~ 148 (175)
T cd00871 82 PGHPLVLQYAVRVLESYPVETVFFYIPQIVQALRYDKM--------GYVEEYILETAKRSQLFAHQIIWNMQTNC 148 (175)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccc--------chHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 44678899999999999999999999999999998532 3688999999887654 6678777654
No 86
>TIGR03724 arch_bud32 Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.
Probab=45.38 E-value=16 Score=39.88 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.8
Q ss_pred cCCCCCCeeEEecCCCeEEEeecchh
Q 000498 1283 LGDRHAMNILIDQATAEVVHIDLGVA 1308 (1460)
Q Consensus 1283 LGDRH~~NILld~~tG~vvhIDfg~~ 1308 (1460)
=||-||.|||++ .|++.-||||.+
T Consensus 113 H~Dl~~~Nil~~--~~~~~liDfg~a 136 (199)
T TIGR03724 113 HGDLTTSNIIVR--DDKLYLIDFGLG 136 (199)
T ss_pred cCCCCcceEEEE--CCcEEEEECCCC
Confidence 499999999999 799999999864
No 87
>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane
Probab=43.88 E-value=40 Score=37.53 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCC--------CceEEEcCCCCchHHHhhh
Q 000498 1144 AVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPS--------AGILEWVDGTVPLGDYLIG 1200 (1460)
Q Consensus 1144 ~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs~~--------~GLIE~v~~t~sl~~il~~ 1200 (1460)
.+..+=+..++.+.+ ..|.|+.+|..... .=+.|.++++.+|.+++..
T Consensus 56 ~ra~~E~~~~~~L~~---------~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~ 111 (206)
T PF06293_consen 56 SRAKREWRNLQRLRE---------AGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQ 111 (206)
T ss_pred hHHHHHHHHHHHHHH---------cCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHh
Confidence 345555555555554 46888888887665 2267899999999998753
No 88
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=43.23 E-value=54 Score=29.02 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=37.4
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhh-hhhH
Q 000498 409 SSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVG-CMHV 487 (1460)
Q Consensus 409 ~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~lG-~~~~ 487 (1460)
......|.++|+|++|+.+|+..++.+ |+ +...+.++-.|+..+| .+..
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~~-----------------p~-------------~~~~~~~~g~~~~~~~~~~~~ 56 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIELD-----------------PN-------------NAEAYYNLGLAYMKLGKDYEE 56 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHS-----------------TT-------------HHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------CC-------------CHHHHHHHHHHHHHhCccHHH
Confidence 345577889999999999999999975 33 2335667778888888 5544
Q ss_pred H
Q 000498 488 L 488 (1460)
Q Consensus 488 L 488 (1460)
.
T Consensus 57 A 57 (69)
T PF13414_consen 57 A 57 (69)
T ss_dssp H
T ss_pred H
Confidence 3
No 89
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=41.41 E-value=20 Score=39.28 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=25.6
Q ss_pred ccCCCCCCeeEEecCCCeEEEeecchhhccc
Q 000498 1282 GLGDRHAMNILIDQATAEVVHIDLGVAFEQG 1312 (1460)
Q Consensus 1282 gLGDRH~~NILld~~tG~vvhIDfg~~f~~g 1312 (1460)
-=||-+|+||+++. +|++.=||||.++..+
T Consensus 147 ~H~Dl~p~Nill~~-~~~~~liDfg~~~~~~ 176 (198)
T cd05144 147 IHGDLSEFNILVDD-DEKIYIIDWPQMVSTD 176 (198)
T ss_pred CcCCCCcccEEEcC-CCcEEEEECCccccCC
Confidence 34799999999996 8999999999986643
No 90
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=40.48 E-value=9.7e+02 Score=31.30 Aligned_cols=77 Identities=16% Similarity=-0.022 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchh
Q 000498 680 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAP 759 (1460)
Q Consensus 680 ~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~l~~~~~~~~~~a 759 (1460)
...|...+......|++..|...+.++..+.+ ....+.+..|..++..|+...|+..++..+...+ ..+
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P--------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p---~~~ 399 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIELDP--------RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS---EDP 399 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCH
Confidence 34556667777788899988888877654421 1223456778889999999999998877665432 234
Q ss_pred HHHHHHHH
Q 000498 760 DVYRLVGK 767 (1460)
Q Consensus 760 ~ll~llG~ 767 (1460)
+++..+|.
T Consensus 400 ~~~~~lg~ 407 (615)
T TIGR00990 400 DIYYHRAQ 407 (615)
T ss_pred HHHHHHHH
Confidence 44444444
No 91
>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]
Probab=40.06 E-value=17 Score=43.13 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.7
Q ss_pred CCCCCCeeEEecCCCeEEEeecchhhccc
Q 000498 1284 GDRHAMNILIDQATAEVVHIDLGVAFEQG 1312 (1460)
Q Consensus 1284 GDRH~~NILld~~tG~vvhIDfg~~f~~g 1312 (1460)
-|-+|+||||+. +|.+==+|||.+-..+
T Consensus 144 RDLKPQNlLi~~-~G~lKlaDFGlAra~~ 171 (323)
T KOG0594|consen 144 RDLKPQNLLISS-SGVLKLADFGLARAFS 171 (323)
T ss_pred ccCCcceEEECC-CCcEeeeccchHHHhc
Confidence 688999999997 9999999999876544
No 92
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=39.86 E-value=75 Score=25.90 Aligned_cols=30 Identities=23% Similarity=0.112 Sum_probs=26.0
Q ss_pred hHHHHHHHHHcCChHHHHHHHHHHHhhccC
Q 000498 725 RLEEAKLLRAQGQHEMAINLAKYISENYES 754 (1460)
Q Consensus 725 ~lE~Ak~LWa~Ge~~~AI~~Lk~l~~~~~~ 754 (1460)
.+..|+.++..|+.+.|+.+++.+++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 467899999999999999999999886553
No 93
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=39.84 E-value=18 Score=41.20 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.2
Q ss_pred CCCCCCeeEEecCCCeEEEeecchh
Q 000498 1284 GDRHAMNILIDQATAEVVHIDLGVA 1308 (1460)
Q Consensus 1284 GDRH~~NILld~~tG~vvhIDfg~~ 1308 (1460)
||=||+||+++. .| ++=||||..
T Consensus 159 ~Dikp~Nili~~-~g-i~liDfg~~ 181 (232)
T PRK10359 159 GDPHKGNFIVSK-NG-LRIIDLSGK 181 (232)
T ss_pred CCCChHHEEEeC-CC-EEEEECCCc
Confidence 799999999986 67 999999853
No 94
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=39.72 E-value=20 Score=38.61 Aligned_cols=26 Identities=42% Similarity=0.535 Sum_probs=23.0
Q ss_pred cCCCCCCeeEEecCCCeEEEeecchhhc
Q 000498 1283 LGDRHAMNILIDQATAEVVHIDLGVAFE 1310 (1460)
Q Consensus 1283 LGDRH~~NILld~~tG~vvhIDfg~~f~ 1310 (1460)
=||-||+||+++ +|.+.=||||.+-.
T Consensus 138 H~Dl~p~Nili~--~~~~~liDfg~a~~ 163 (187)
T cd05119 138 HGDLSEYNILVD--DGKVYIIDVPQAVE 163 (187)
T ss_pred cCCCChhhEEEE--CCcEEEEECccccc
Confidence 479999999999 89999999998744
No 95
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=39.21 E-value=19 Score=45.86 Aligned_cols=48 Identities=27% Similarity=0.406 Sum_probs=32.9
Q ss_pred chhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEE--cCCCCceEEEcCCCCchHHH
Q 000498 1139 DLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVP--FTPSAGILEWVDGTVPLGDY 1197 (1460)
Q Consensus 1139 DlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViP--Ls~~~GLIE~v~~t~sl~~i 1197 (1460)
|+|+++.-+.-|+ ..++.+ -.++.|+|.+ .++++=.+||+++ +++.++
T Consensus 207 Dy~~EA~n~~~~~---~nf~~~-------~~v~VP~V~we~t~~~VLtmE~i~G-i~i~d~ 256 (517)
T COG0661 207 DYRREAANAERFR---ENFKDD-------PDVYVPKVYWEYTTRRVLTMEWIDG-IKISDI 256 (517)
T ss_pred CHHHHHHHHHHHH---HHcCCC-------CCeEeceeehhccCCcEEEEEeeCC-EecccH
Confidence 6777777666553 333333 3688999996 5888889999998 555554
No 96
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=39.18 E-value=2.5e+02 Score=38.29 Aligned_cols=108 Identities=26% Similarity=0.324 Sum_probs=75.7
Q ss_pred CCCceEeeeeecCccchhHHHHHHHHHHHHHHHHhhCcccccCCceeccceEEEcCCCCceEEEcCCCCchHHHhhhhcc
Q 000498 1124 SDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTR 1203 (1460)
Q Consensus 1124 sdG~~y~~L~K~g~dDlRqD~r~~Qlf~~iN~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~il~~~~~ 1203 (1460)
+||+ +.+.|+ .+++-|+...+++..+|.-... ..+++++|+.-+ +-|-.|||+. .|..+
T Consensus 111 ~~g~--kivYKP--r~l~~d~~f~~~l~~ln~~~~~--------~~~~~~~~l~~~-~ygw~EfI~~-~~c~~------- 169 (825)
T cd04792 111 SSGL--KLVYKP--RSLSVDALFQELLEWLNSFLGA--------LPLRTPKVLDRG-DYGWEEFIEH-QPCQS------- 169 (825)
T ss_pred CCCC--EEEECC--CCchHHHHHHHHHHHHHhcCCc--------cccccceeeecC-CcceEEeecC-CCCCC-------
Confidence 3565 457786 6999999999999999875432 234788888755 5699999985 11110
Q ss_pred CCCCCCCcCCCcchhHHHHhhhcchHhHHHHHHHHHhhhhhhHHHHHHHHcCCchHHHHHHHHHHHhhhccchhhheecc
Q 000498 1204 NGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGL 1283 (1460)
Q Consensus 1204 ~~~~~~r~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w~~~R~~ft~S~A~~S~vgyIlgL 1283 (1460)
.. + -.+|=+-++.+-.+.|+||.
T Consensus 170 ------------------------~~---e------------------------------~~~fY~r~G~llal~y~L~~ 192 (825)
T cd04792 170 ------------------------KE---E------------------------------VERYYYRLGGLLALLYLLNA 192 (825)
T ss_pred ------------------------HH---H------------------------------HHHHHHHHHHHHHHHHHcCC
Confidence 00 0 01355567788889999999
Q ss_pred CCCCCCeeEEecCCCeEEEeecchhhcc
Q 000498 1284 GDRHAMNILIDQATAEVVHIDLGVAFEQ 1311 (1460)
Q Consensus 1284 GDRH~~NILld~~tG~vvhIDfg~~f~~ 1311 (1460)
.|-|-+||.-+ -+..|=||+--+|..
T Consensus 193 tD~H~ENiIA~--g~~PvlIDlETlf~~ 218 (825)
T cd04792 193 TDLHFENIIAS--GEYPVLIDLETLFHP 218 (825)
T ss_pred cccchhhheee--CCCceEEeeHHhcCC
Confidence 99999999554 366788888766653
No 97
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=39.17 E-value=2.9e+02 Score=29.63 Aligned_cols=86 Identities=15% Similarity=0.131 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhchhhHHhhhhHhHhHHhhccccCCCCCCCcCCCcchHHHHHHHHHhhcCCchhhhhhhcc-----c---
Q 000498 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 406 (1460)
Q Consensus 335 ~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdEPD~~yGi~~~-----~--- 406 (1460)
+..+|.....-+-|..|+-+++..++.. |. .......+-.+|...+++|.+...... +
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~--------p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD--------PD------DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--------cc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 4567888888899999999988754321 11 123344566777777777776655431 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhh
Q 000498 407 -KLSSQIVTLEHEGNWSKALEYYELQVRS 434 (1460)
Q Consensus 407 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~ 434 (1460)
.......-|...|++++|+.+|+..++.
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIED 128 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 1123345667778888888888877663
No 98
>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily.; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....
Probab=39.08 E-value=21 Score=39.45 Aligned_cols=33 Identities=30% Similarity=0.340 Sum_probs=24.0
Q ss_pred hhhheeccCCCCCCeeEEecCCCeEEEeecchh
Q 000498 1276 MVGYIVGLGDRHAMNILIDQATAEVVHIDLGVA 1308 (1460)
Q Consensus 1276 ~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~ 1308 (1460)
-....+.=||=||+|||++...|+|--|||+.+
T Consensus 163 ~~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a 195 (239)
T PF01636_consen 163 PLPPVLIHGDLHPGNILVDPSDGRIGIIDFEDA 195 (239)
T ss_dssp CSCEEEE-SS-SGGGEEEESSTTEEEE--GTT-
T ss_pred CCCcEEEEeccccccceeeeccceeEEEecccc
Confidence 467788889999999999977788879999865
No 99
>PRK14879 serine/threonine protein kinase; Provisional
Probab=38.43 E-value=23 Score=38.93 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=21.7
Q ss_pred cCCCCCCeeEEecCCCeEEEeecchh
Q 000498 1283 LGDRHAMNILIDQATAEVVHIDLGVA 1308 (1460)
Q Consensus 1283 LGDRH~~NILld~~tG~vvhIDfg~~ 1308 (1460)
=||-+|.|||++ .|.+.-||||.+
T Consensus 118 H~Dl~p~Nil~~--~~~~~liDf~~a 141 (211)
T PRK14879 118 HGDLTTSNMILS--GGKIYLIDFGLA 141 (211)
T ss_pred cCCCCcccEEEE--CCCEEEEECCcc
Confidence 389999999999 799999999965
No 100
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=38.30 E-value=18 Score=46.32 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.0
Q ss_pred cCCCCCCeeEEecCCC----eEEEeecchh
Q 000498 1283 LGDRHAMNILIDQATA----EVVHIDLGVA 1308 (1460)
Q Consensus 1283 LGDRH~~NILld~~tG----~vvhIDfg~~ 1308 (1460)
=+|=||.||+++. .| +++-+|||+.
T Consensus 283 HaDpHPGNIlv~~-~g~~~~~i~llDFGiv 311 (537)
T PRK04750 283 HADMHPGNIFVSY-DPPENPRYIALDFGIV 311 (537)
T ss_pred eCCCChHHeEEec-CCCCCCeEEEEecceE
Confidence 4899999999996 45 9999999976
No 101
>smart00090 RIO RIO-like kinase.
Probab=37.63 E-value=23 Score=40.41 Aligned_cols=28 Identities=36% Similarity=0.490 Sum_probs=24.2
Q ss_pred cCCCCCCeeEEecCCCeEEEeecchhhccc
Q 000498 1283 LGDRHAMNILIDQATAEVVHIDLGVAFEQG 1312 (1460)
Q Consensus 1283 LGDRH~~NILld~~tG~vvhIDfg~~f~~g 1312 (1460)
=||=+|+||+++ +|++.=||||.+...+
T Consensus 172 H~Dikp~NIli~--~~~i~LiDFg~a~~~~ 199 (237)
T smart00090 172 HGDLSEYNILVH--DGKVVIIDVSQSVELD 199 (237)
T ss_pred eCCCChhhEEEE--CCCEEEEEChhhhccC
Confidence 379999999999 8999999999877544
No 102
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=37.57 E-value=64 Score=28.25 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=38.2
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhhhhhHHHH
Q 000498 411 QIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDM 490 (1460)
Q Consensus 411 ~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~lG~~~~L~~ 490 (1460)
+...|-..|++++|...|+..++.. |. +.+...++-+|+...|.+.....
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-----------------P~-------------~~~a~~~lg~~~~~~g~~~~A~~ 52 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-----------------PD-------------NPEAWYLLGRILYQQGRYDEALA 52 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-----------------TT-------------HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-----------------CC-------------CHHHHHHHHHHHHHcCCHHHHHH
Confidence 3467888999999999999999965 33 33456788889999998766543
Q ss_pred h
Q 000498 491 Y 491 (1460)
Q Consensus 491 ~ 491 (1460)
+
T Consensus 53 ~ 53 (65)
T PF13432_consen 53 Y 53 (65)
T ss_dssp H
T ss_pred H
Confidence 3
No 103
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=37.02 E-value=4.2e+02 Score=35.39 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhchhhHHhhhhHhHhHHhhccccCCCCCCCcCCCcchHHHHHHHHHhhcCCchhhhhhhcc------cc-
Q 000498 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS------HK- 407 (1460)
Q Consensus 335 ~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdEPD~~yGi~~~------~~- 407 (1460)
+..||.+++++|.|.-|+..+|..++.. |++ ....-.+..|-.+.+..|.+-..... .+
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~--------Pd~------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~ 154 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQRF--------PDS------SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA 154 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhC--------CCc------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Confidence 5689999999999999999999866442 332 12222344555566666666555431 11
Q ss_pred --hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhhhh
Q 000498 408 --LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 485 (1460)
Q Consensus 408 --l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~lG~~ 485 (1460)
+.....-..+.|+.++|.+.|+..+... |+ ..+...++-.+|..+|..
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-----------------p~-------------~~~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFERLSRQH-----------------PE-------------FENGYVGWAQSLTRRGAL 204 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhcC-----------------CC-------------cHHHHHHHHHHHHHcCCH
Confidence 2345578889999999999999999843 33 223567888899999975
Q ss_pred hHH
Q 000498 486 HVL 488 (1460)
Q Consensus 486 ~~L 488 (1460)
+-.
T Consensus 205 ~~A 207 (694)
T PRK15179 205 WRA 207 (694)
T ss_pred HHH
Confidence 443
No 104
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=36.15 E-value=2.1e+02 Score=28.78 Aligned_cols=67 Identities=18% Similarity=-0.029 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 000498 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 753 (1460)
Q Consensus 679 ~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~l~~~~~ 753 (1460)
....|...+....+.|++..|...+.++..+.+ .+....+..|..++..|+...|+..++..++..+
T Consensus 50 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 50 NSRYWLGLAACCQMLKEYEEAIDAYALAAALDP--------DDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 345677778888899999999988877654421 1223356789999999999999999987776543
No 105
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=35.89 E-value=1.1e+02 Score=27.68 Aligned_cols=70 Identities=11% Similarity=-0.132 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHH
Q 000498 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYIS 749 (1460)
Q Consensus 679 ~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~l~ 749 (1460)
+...+...|...+..|+++.|...+.++..+... .+...+....+....|.+.-.+|+.+.|+..++.-+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQ-LGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566777899999999999999887776655211 111112223344677888899999999999886544
No 106
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=35.21 E-value=2.8e+02 Score=24.12 Aligned_cols=62 Identities=16% Similarity=-0.112 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 000498 683 LLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENY 752 (1460)
Q Consensus 683 wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~l~~~~ 752 (1460)
|...+......|++..|...+.++..... ....+.+..|..++..|+...|+..++..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 64 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP--------DNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45667777888999999988877644321 111345678999999999999999998776543
No 107
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=35.06 E-value=25 Score=44.03 Aligned_cols=24 Identities=25% Similarity=0.592 Sum_probs=22.0
Q ss_pred CCCCCCeeEEecCCCeEEEeecchh
Q 000498 1284 GDRHAMNILIDQATAEVVHIDLGVA 1308 (1460)
Q Consensus 1284 GDRH~~NILld~~tG~vvhIDfg~~ 1308 (1460)
||=||.||+++. +|+++=+|||.+
T Consensus 281 ~D~hPgNilv~~-~g~i~liDfG~~ 304 (437)
T TIGR01982 281 ADLHPGNIFVLK-DGKIIALDFGIV 304 (437)
T ss_pred CCCCcccEEECC-CCcEEEEeCCCe
Confidence 799999999975 899999999975
No 108
>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.
Probab=33.19 E-value=21 Score=39.42 Aligned_cols=43 Identities=37% Similarity=0.531 Sum_probs=27.9
Q ss_pred CCCCCCeeEEecCCCeEEEeecchhhccccCCCCCCCCCcccchhhhhcc
Q 000498 1284 GDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGM 1333 (1460)
Q Consensus 1284 GDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv~~m 1333 (1460)
||-++.|||++. |+++-||||-+++.. .| .--.-|.|++.+..
T Consensus 131 GDLs~~NIlv~~--~~~~iIDf~qav~~~----~p-~a~~~l~RDi~ni~ 173 (188)
T PF01163_consen 131 GDLSEYNILVDD--GKVYIIDFGQAVDSS----HP-NAEELLRRDIENII 173 (188)
T ss_dssp SS-STTSEEEET--TCEEE--GTTEEETT----ST-THHHHHHHHHHHHH
T ss_pred cCCChhhEEeec--ceEEEEecCcceecC----Cc-cHHHHHHHHHHHHH
Confidence 999999999996 599999999877754 23 22344666654443
No 109
>PRK09550 mtnK methylthioribose kinase; Reviewed
Probab=33.13 E-value=6e+02 Score=31.63 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=24.4
Q ss_pred hheeccCCCCCCeeEEecCCCeEEEeecchhh
Q 000498 1278 GYIVGLGDRHAMNILIDQATAEVVHIDLGVAF 1309 (1460)
Q Consensus 1278 gyIlgLGDRH~~NILld~~tG~vvhIDfg~~f 1309 (1460)
+..|-=||-|+.|||+.. +.+.-|||-++|
T Consensus 222 ~~~l~HgDl~~gni~~~~--~~~~viD~E~a~ 251 (401)
T PRK09550 222 AEALLHGDLHTGSIFVTE--EETKVIDPEFAF 251 (401)
T ss_pred CCceeeccCCcccEEeeC--CCcEEEeccccc
Confidence 334788999999999975 469999997665
No 110
>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]
Probab=33.04 E-value=28 Score=44.43 Aligned_cols=53 Identities=23% Similarity=0.134 Sum_probs=35.6
Q ss_pred ccchhhheeccCCCCCCeeEEecCCCeEEEeecchhhccccCCCCCCCCCcccchhhh
Q 000498 1273 ASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDII 1330 (1460)
Q Consensus 1273 ~~S~vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f~~g~~l~~pE~VPFRLTrniv 1330 (1460)
+-.+=+.=.=.+|-||+|||++..-|.+--+|||+.-+.-..+..| ++|.+.+
T Consensus 428 v~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~~~tp-----~~t~~y~ 480 (612)
T KOG0603|consen 428 VDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERSCDTP-----ALTLQYV 480 (612)
T ss_pred HHHHHhcCeeecCCChhheeecCCCCcEEEEEechhhhCchhhccc-----chhhccc
Confidence 3333333445799999999997678999999999876543223233 5555544
No 111
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.50 E-value=35 Score=37.72 Aligned_cols=33 Identities=33% Similarity=0.527 Sum_probs=25.4
Q ss_pred CCceeccceEEEcCCCCce--EEEcCCCCchHHHhh
Q 000498 1166 RRLGVRTYKVVPFTPSAGI--LEWVDGTVPLGDYLI 1199 (1460)
Q Consensus 1166 r~L~i~tY~ViPLs~~~GL--IE~v~~t~sl~~il~ 1199 (1460)
+.+.+.+|.|.-+.|..|+ +|+|++ ..|.+++.
T Consensus 57 ~~~GV~~P~v~dvD~~~~~I~me~I~G-~~lkd~l~ 91 (204)
T COG3642 57 REAGVPVPIVYDVDPDNGLIVMEYIEG-ELLKDALE 91 (204)
T ss_pred HHcCCCCCeEEEEcCCCCEEEEEEeCC-hhHHHHHH
Confidence 3568999999999999975 589987 44666554
No 112
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=32.44 E-value=25 Score=41.19 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.1
Q ss_pred CCCCCCeeEEecCCCeEEEeecchhhc
Q 000498 1284 GDRHAMNILIDQATAEVVHIDLGVAFE 1310 (1460)
Q Consensus 1284 GDRH~~NILld~~tG~vvhIDfg~~f~ 1310 (1460)
-|--|+|||||+ +|.+=-+|||++=.
T Consensus 168 RDLKPENiLlD~-~G~iKitDFGFAK~ 193 (355)
T KOG0616|consen 168 RDLKPENLLLDQ-NGHIKITDFGFAKR 193 (355)
T ss_pred ccCChHHeeecc-CCcEEEEeccceEE
Confidence 588999999996 99999999998743
No 113
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=31.48 E-value=1.8e+02 Score=33.64 Aligned_cols=110 Identities=16% Similarity=0.163 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhchhhHHhhhhHhHhHHhhccccCCCCCCCcCCCcchHHHHHHHHHhhcCCchhhhhhhc--------cc
Q 000498 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ--------SH 406 (1460)
Q Consensus 335 ~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdEPD~~yGi~~--------~~ 406 (1460)
+...|....+.|-+..|+-+.+..++.. | ..++....|.-++-..++.+-+--+.. .+
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~--------P------~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~ 214 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALELD--------P------DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP 214 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH---------T------T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--------C------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH
Confidence 4568888899999999999999877552 1 124455667667766777775333321 22
Q ss_pred c-hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhhhh
Q 000498 407 K-LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 485 (1460)
Q Consensus 407 ~-l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~lG~~ 485 (1460)
. ......-|...|+.++|+.+|+..+... |+ +......+..+|...|..
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-----------------p~-------------d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKLN-----------------PD-------------DPLWLLAYADALEQAGRK 264 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-----------------TT--------------HHHHHHHHHHHT-----
T ss_pred HHHHHHHHHhcccccccccccccccccccc-----------------cc-------------cccccccccccccccccc
Confidence 2 3456788999999999999999998865 33 223445677788888875
Q ss_pred hHH
Q 000498 486 HVL 488 (1460)
Q Consensus 486 ~~L 488 (1460)
+..
T Consensus 265 ~~A 267 (280)
T PF13429_consen 265 DEA 267 (280)
T ss_dssp ---
T ss_pred ccc
Confidence 543
No 114
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=31.07 E-value=3.6e+02 Score=29.80 Aligned_cols=82 Identities=18% Similarity=0.090 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhH
Q 000498 681 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPD 760 (1460)
Q Consensus 681 ~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~l~~~~~~~~~~a~ 760 (1460)
+.+-+.|..+=..|++..|...+..+...-+ .+ +....+.+..|......|+...|+...+.++.+++.++....
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P--~s---~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYP--NS---PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T--TS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CC---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence 3455567778889999999999888764321 11 112235688999999999999999999999999988887777
Q ss_pred HHHHHHH
Q 000498 761 VYRLVGK 767 (1460)
Q Consensus 761 ll~llG~ 767 (1460)
++.++|.
T Consensus 81 A~Y~~g~ 87 (203)
T PF13525_consen 81 ALYMLGL 87 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776665
No 115
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=30.08 E-value=76 Score=23.94 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.1
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhhh
Q 000498 411 QIVTLEHEGNWSKALEYYELQVRSD 435 (1460)
Q Consensus 411 ~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1460)
...-|.+.|++++|+.+|+..++.+
T Consensus 7 ~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 7 LGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHC
Confidence 4567899999999999999999975
No 116
>PRK12274 serine/threonine protein kinase; Provisional
Probab=29.49 E-value=40 Score=38.07 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.8
Q ss_pred CCC-CCCeeEEecCCCeEEEeecchhh
Q 000498 1284 GDR-HAMNILIDQATAEVVHIDLGVAF 1309 (1460)
Q Consensus 1284 GDR-H~~NILld~~tG~vvhIDfg~~f 1309 (1460)
+|- .|+|||++. .|++.=||||.+-
T Consensus 115 rDL~kp~NILv~~-~g~i~LIDFG~A~ 140 (218)
T PRK12274 115 NDLAKEANWLVQE-DGSPAVIDFQLAV 140 (218)
T ss_pred CCCCCcceEEEcC-CCCEEEEECCCce
Confidence 888 589999995 8999999999864
No 117
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=29.22 E-value=38 Score=38.75 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=22.3
Q ss_pred cCCCCCCeeEEecCCCeEEEeecchhh
Q 000498 1283 LGDRHAMNILIDQATAEVVHIDLGVAF 1309 (1460)
Q Consensus 1283 LGDRH~~NILld~~tG~vvhIDfg~~f 1309 (1460)
=+|-+|+|||++. +|++.=||||.+-
T Consensus 165 HrDlkp~NILv~~-~~~v~LIDfg~~~ 190 (239)
T PRK01723 165 HADLNAHNILLDP-DGKFWLIDFDRGE 190 (239)
T ss_pred CCCCCchhEEEcC-CCCEEEEECCCcc
Confidence 4799999999996 7899999999643
No 118
>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer
Probab=29.14 E-value=72 Score=37.42 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=29.0
Q ss_pred hhhheeccCCCCCCeeEEecC---CCeEEEeecchh
Q 000498 1276 MVGYIVGLGDRHAMNILIDQA---TAEVVHIDLGVA 1308 (1460)
Q Consensus 1276 ~vgyIlgLGDRH~~NILld~~---tG~vvhIDfg~~ 1308 (1460)
-...++.=||-|+.|||++.. +|++.-|||.++
T Consensus 176 ~~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya 211 (302)
T cd05156 176 GSPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYA 211 (302)
T ss_pred CCCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCC
Confidence 467889999999999999965 589999999875
No 119
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=27.92 E-value=1.5e+02 Score=30.73 Aligned_cols=62 Identities=26% Similarity=0.157 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHH
Q 000498 682 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYI 748 (1460)
Q Consensus 682 ~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~l 748 (1460)
..+..|+.+-..|.+..|...+..+..-. ..+.....+.+-.|+++..+|+.+.|+..|+.+
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~ 111 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLARILLQQGQYDEALATLQQI 111 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 34667889999999999999998875321 111222346788899999999999999999664
No 120
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=27.82 E-value=50 Score=33.14 Aligned_cols=25 Identities=40% Similarity=0.372 Sum_probs=22.6
Q ss_pred CCCCCCeeEEecCCCeEEEeecchhh
Q 000498 1284 GDRHAMNILIDQATAEVVHIDLGVAF 1309 (1460)
Q Consensus 1284 GDRH~~NILld~~tG~vvhIDfg~~f 1309 (1460)
||=+|+|||++. +|.+.=+|||.+.
T Consensus 113 ~Dl~~~Nil~~~-~~~~~l~Df~~~~ 137 (155)
T cd05120 113 GDLHPGNILVDD-GKILGIIDWEYAG 137 (155)
T ss_pred cCCCcceEEEEC-CcEEEEEeccccc
Confidence 899999999997 8999999998754
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=27.71 E-value=4.3e+02 Score=29.47 Aligned_cols=85 Identities=20% Similarity=0.080 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchh
Q 000498 680 MQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAP 759 (1460)
Q Consensus 680 ~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~l~~~~~~~~~~a 759 (1460)
...+...+..+.+.|+++.|...+.++....+. .+....+.+..|..+-.+|+...|+..++.++...+......
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPF-----SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 445677778888999999999988877544221 111112457789999999999999999999988776555554
Q ss_pred HHHHHHHHHH
Q 000498 760 DVYRLVGKWL 769 (1460)
Q Consensus 760 ~ll~llG~Wl 769 (1460)
.++.++|.-.
T Consensus 108 ~a~~~~g~~~ 117 (235)
T TIGR03302 108 YAYYLRGLSN 117 (235)
T ss_pred HHHHHHHHHH
Confidence 4555544433
No 122
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=27.45 E-value=1.2e+03 Score=28.59 Aligned_cols=60 Identities=13% Similarity=-0.019 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHH
Q 000498 681 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKY 747 (1460)
Q Consensus 681 ~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~ 747 (1460)
......+.++-+.|+++.|...+..++.+..+ |... .....+.++|..|+...|.++-++
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~-----p~~~--~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQ-----LDAN--DLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC-----CCHH--HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45567789999999999999988743333211 1111 234779999999999999888754
No 123
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=27.29 E-value=86 Score=23.37 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=21.3
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000498 411 QIVTLEHEGNWSKALEYYELQVRSDV 436 (1460)
Q Consensus 411 ~i~~yE~eg~W~kAL~~Yd~~l~~~~ 436 (1460)
....|.+.|++++|..+|+..++..|
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 44678999999999999999998753
No 124
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=27.24 E-value=1.4e+02 Score=26.64 Aligned_cols=51 Identities=20% Similarity=0.185 Sum_probs=37.0
Q ss_pred HHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCccCCCCCchhhhhhccchhhHHHHHHHhhhhhhHHHHhh
Q 000498 413 VTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYC 492 (1460)
Q Consensus 413 ~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~lG~~~~L~~~~ 492 (1460)
..|-+.++|++|+.+++..+..+ |+ +.......-.|+..+|.++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-----------------p~-------------~~~~~~~~a~~~~~~g~~~~A~~~l 52 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-----------------PD-------------DPELWLQRARCLFQLGRYEEALEDL 52 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-----------------cc-------------cchhhHHHHHHHHHhccHHHHHHHH
Confidence 45788999999999999999975 33 1224456677888899876654433
Q ss_pred h
Q 000498 493 K 493 (1460)
Q Consensus 493 ~ 493 (1460)
+
T Consensus 53 ~ 53 (73)
T PF13371_consen 53 E 53 (73)
T ss_pred H
Confidence 3
No 125
>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain
Probab=26.77 E-value=48 Score=36.38 Aligned_cols=32 Identities=22% Similarity=0.143 Sum_probs=25.9
Q ss_pred hhheeccCCCCCCeeEEecC-CCeEEEeecchh
Q 000498 1277 VGYIVGLGDRHAMNILIDQA-TAEVVHIDLGVA 1308 (1460)
Q Consensus 1277 vgyIlgLGDRH~~NILld~~-tG~vvhIDfg~~ 1308 (1460)
.-..+-=||=|++||+++.. +|.+.=|||+.+
T Consensus 172 ~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~ 204 (223)
T cd05154 172 SRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELA 204 (223)
T ss_pred CCcEEEECCCCcccEEEcCCCCcEEEEEecccc
Confidence 56677789999999999975 455677999864
No 126
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=26.36 E-value=1.5e+02 Score=26.95 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=21.3
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhh
Q 000498 409 SSQIVTLEHEGNWSKALEYYELQVRS 434 (1460)
Q Consensus 409 ~~~i~~yE~eg~W~kAL~~Yd~~l~~ 434 (1460)
.....-|...|+|++|+.+|+..++.
T Consensus 9 ~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 9 NNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34557788999999999999999886
No 127
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=26.23 E-value=2.1e+02 Score=29.23 Aligned_cols=62 Identities=29% Similarity=0.156 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHH
Q 000498 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLA 745 (1460)
Q Consensus 679 ~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~L 745 (1460)
-.+.+++.++..|.-|+...|.+.|.+... ..+.... ....+.-.|-.|+..|+++.|+..+
T Consensus 37 ~~~a~i~lastlr~LG~~deA~~~L~~~~~--~~p~~~~---~~~l~~f~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 37 RRRALIQLASTLRNLGRYDEALALLEEALE--EFPDDEL---NAALRVFLALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCccc---cHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356789999999999999999999987532 2111111 1123445788999999999999976
No 128
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=26.02 E-value=3.1e+02 Score=33.38 Aligned_cols=87 Identities=9% Similarity=-0.062 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhchhhHHhhhhHhHhHHhhccccCCCCCCCcCCCcchHHHHHHHHHhhcCCchhhhhhhcc-----c-c-
Q 000498 335 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-K- 407 (1460)
Q Consensus 335 ~~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdEPD~~yGi~~~-----~-~- 407 (1460)
...-|..|..-+-|..|+-+++..++.. | ..+...-.+-.+|..+++.+.+...... + .
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~--------P------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~ 70 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD--------P------NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA 70 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence 3466899999999999999888766431 1 1234556677888999999888877541 1 1
Q ss_pred --hhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000498 408 --LSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1460)
Q Consensus 408 --l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1460)
.-....-|.+.|++++|+.+|+..++.+
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 1234467889999999999999999965
No 129
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=25.86 E-value=3.5e+02 Score=25.95 Aligned_cols=69 Identities=14% Similarity=0.021 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhccCC
Q 000498 682 HLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESN 755 (1460)
Q Consensus 682 ~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~l~~~~~~~ 755 (1460)
.+...+.+..+.|++..|...+..+....+. ... ...+.+..+..+...|+...|+..++.++...+.+
T Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 41 AHYWLGEAYYAQGKYADAAKAFLAVVKKYPK--SPK---APDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHCCC--CCc---ccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 4455688999999999999998887544221 111 11234677888999999999999999888776543
No 130
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=25.76 E-value=87 Score=26.71 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHhhhcCcchhhchHHHHHHHH
Q 000498 87 SEELLIAVLKILKKYLMDDSVQIVDMTSQTLRGI 120 (1460)
Q Consensus 87 ~~~~~~~il~~l~~~l~~~~~~~~~~a~~~L~~i 120 (1460)
....+..++..|...|.|++..|+..|..||-+|
T Consensus 22 ~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 22 LQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4567888999999999999999999999998764
No 131
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=25.33 E-value=6.6e+02 Score=26.73 Aligned_cols=86 Identities=13% Similarity=0.057 Sum_probs=57.0
Q ss_pred HHHHHHHHHhchhhHHhhhhHhHhHHhhccccCCCCCCCcCCCcchHHHHHHHHHhhcCCchhhhhhhccc---------
Q 000498 336 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH--------- 406 (1460)
Q Consensus 336 ~~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdEPD~~yGi~~~~--------- 406 (1460)
..+|.....-+-|..|+-+.+...+.. + ......-.+-.+|...+++|.+.-.....
T Consensus 69 ~~la~~~~~~~~~~~A~~~~~~al~~~--------~------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 134 (234)
T TIGR02521 69 LALALYYQQLGELEKAEDSFRRALTLN--------P------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQP 134 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--------C------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc
Confidence 457788888899999999988755331 1 11233344566677777776655543210
Q ss_pred --chhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000498 407 --KLSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1460)
Q Consensus 407 --~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1460)
.......-|...|++++|..+|+..++..
T Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 135 ARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 12234567889999999999999998854
No 132
>PRK05685 fliS flagellar protein FliS; Validated
Probab=24.67 E-value=4e+02 Score=27.67 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhh-------hHHHHHHHHHH
Q 000498 548 LHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEE-------STEYIYSAIVK 595 (1460)
Q Consensus 548 L~~~L~Al~~~d~~~~~~~i~~aR~~l~~~Ls~~s~E-------S~~~~y~~lvr 595 (1460)
+..+..|+.+||++.+...|.+|+.-+.+-.+++-.| ....+|.++.+
T Consensus 39 l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~LY~y~~~ 93 (132)
T PRK05685 39 LAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSALYDYMIR 93 (132)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHH
Confidence 4456678899999999999999998664433333333 24446666554
No 133
>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes. ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo
Probab=24.36 E-value=1.3e+02 Score=33.77 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=27.4
Q ss_pred hhheeccCCCCCCeeEEecCCCeEEEeecchh
Q 000498 1277 VGYIVGLGDRHAMNILIDQATAEVVHIDLGVA 1308 (1460)
Q Consensus 1277 vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~ 1308 (1460)
...++.=||-|++|||++..+|.+.=|||-++
T Consensus 168 ~~~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a 199 (235)
T cd05157 168 SPIVFCHNDLLSGNIIYNEEKNSVKFIDYEYA 199 (235)
T ss_pred CCEEEEcCCCCcCcEEEeCCCCCEEEEEcccC
Confidence 45678889999999999975688999999865
No 134
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=23.29 E-value=5.4e+02 Score=29.55 Aligned_cols=82 Identities=12% Similarity=-0.001 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhH
Q 000498 681 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPD 760 (1460)
Q Consensus 681 ~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~l~~~~~~~~~~a~ 760 (1460)
+.+-..|..+-+.|++..|...+.++...-+. ++.-..+.+..|...-..|+...|+...+.+++..+.++..+.
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-----s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPF-----GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 33455677788899999999998887653221 1111234578899999999999999999999999988888888
Q ss_pred HHHHHHH
Q 000498 761 VYRLVGK 767 (1460)
Q Consensus 761 ll~llG~ 767 (1460)
++.++|.
T Consensus 108 a~Y~~g~ 114 (243)
T PRK10866 108 VLYMRGL 114 (243)
T ss_pred HHHHHHH
Confidence 8887773
No 135
>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process
Probab=23.14 E-value=64 Score=36.67 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.7
Q ss_pred CCCCCCeeEEecCCCeEEEeecch
Q 000498 1284 GDRHAMNILIDQATAEVVHIDLGV 1307 (1460)
Q Consensus 1284 GDRH~~NILld~~tG~vvhIDfg~ 1307 (1460)
||=||+|++++ .|++.-|||+.
T Consensus 159 GD~hpgNFlv~--~~~i~iID~~~ 180 (229)
T PF06176_consen 159 GDPHPGNFLVS--NNGIRIIDTQG 180 (229)
T ss_pred CCCCcCcEEEE--CCcEEEEECcc
Confidence 99999999998 57799999974
No 136
>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity. Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....
Probab=22.76 E-value=94 Score=34.78 Aligned_cols=48 Identities=23% Similarity=0.327 Sum_probs=32.6
Q ss_pred cCCCCCCeeEEecCCCeEEEeecchhhc---cccCCCCCCCCCcccchhhhh
Q 000498 1283 LGDRHAMNILIDQATAEVVHIDLGVAFE---QGLMLKTPERVPFRLTRDIID 1331 (1460)
Q Consensus 1283 LGDRH~~NILld~~tG~vvhIDfg~~f~---~g~~l~~pE~VPFRLTrniv~ 1331 (1460)
=+|-.|+||+++ ..|++.-+|||.+.. ........-..|.=..|++..
T Consensus 121 H~dikp~NIl~~-~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~ 171 (260)
T PF00069_consen 121 HRDIKPENILLD-ENGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQ 171 (260)
T ss_dssp ESSBSGGGEEES-TTSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHT
T ss_pred cccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence 378899999999 699999999999853 122222222334445667765
No 137
>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members. The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista
Probab=22.69 E-value=64 Score=36.47 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=23.6
Q ss_pred hhheeccCCCCCCeeEEecCCCeE-EEeecchh
Q 000498 1277 VGYIVGLGDRHAMNILIDQATAEV-VHIDLGVA 1308 (1460)
Q Consensus 1277 vgyIlgLGDRH~~NILld~~tG~v-vhIDfg~~ 1308 (1460)
..+.|-=||=|++|||++. |++ --|||+.+
T Consensus 162 ~~~~l~HGD~~~~Nvlv~~--~~i~giIDw~~a 192 (235)
T cd05155 162 GPPVWFHGDLAPGNLLVQD--GRLSAVIDFGCL 192 (235)
T ss_pred CCceEEeCCCCCCcEEEEC--CCEEEEEeCccc
Confidence 3556777999999999984 565 48999975
No 138
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=22.43 E-value=5e+02 Score=26.40 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=33.6
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhh-------hHHHHHHHHHH
Q 000498 547 NLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEE-------STEYIYSAIVK 595 (1460)
Q Consensus 547 ~L~~~L~Al~~~d~~~~~~~i~~aR~~l~~~Ls~~s~E-------S~~~~y~~lvr 595 (1460)
.+..+..++..||++.+...+.+|++-+..-.+.+-.| +..++|.++.+
T Consensus 32 ~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~g~eia~~L~~lY~y~~~ 87 (122)
T PF02561_consen 32 FLKQAKEAIEQGDIEEKNEALQKAQDIITELQSSLDFEKGGEIADNLFRLYDYMIR 87 (122)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHH
Confidence 34467778899999999999999998665433444444 24445655544
No 139
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=22.21 E-value=53 Score=37.99 Aligned_cols=59 Identities=27% Similarity=0.307 Sum_probs=39.6
Q ss_pred CCCCCCeeEEecCCCeEEEeecchhh------ccccC-CCCCCCCCcccchhhh--------hcccccccc---chhH
Q 000498 1284 GDRHAMNILIDQATAEVVHIDLGVAF------EQGLM-LKTPERVPFRLTRDII--------DGMGVTGVE---GVFR 1343 (1460)
Q Consensus 1284 GDRH~~NILld~~tG~vvhIDfg~~f------~~g~~-l~~pE~VPFRLTrniv--------~~mG~~g~e---G~Fr 1343 (1460)
-|--|+|||+|+ +|.|=--|||.|= .+..- ==.|=..|=|++|+=- =-+|++-+| |.|.
T Consensus 192 RDvKPSNILldr-~G~vKLCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fP 268 (361)
T KOG1006|consen 192 RDVKPSNILLDR-HGDVKLCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFP 268 (361)
T ss_pred ccCChhheEEec-CCCEeeecccchHhHHHHHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCC
Confidence 578899999997 9999999999982 11110 0135556668887643 246666655 7664
No 140
>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2.7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....
Probab=22.17 E-value=98 Score=34.31 Aligned_cols=32 Identities=31% Similarity=0.324 Sum_probs=22.8
Q ss_pred hhheeccCCCCCCeeEEecCCCeEEEeecchh
Q 000498 1277 VGYIVGLGDRHAMNILIDQATAEVVHIDLGVA 1308 (1460)
Q Consensus 1277 vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~ 1308 (1460)
...++.=+|-++.|||++..+|++.-|||-++
T Consensus 141 ~~~v~cHnDl~~~Nil~~~~~~~~~lIDfEya 172 (211)
T PF01633_consen 141 SPLVFCHNDLNPGNILINNKDGEVKLIDFEYA 172 (211)
T ss_dssp GGEEEE-S--SGGGEEETSSSSCEEE--GTT-
T ss_pred CCceEeeccCccccEEeccCCCeEEEecHHHH
Confidence 34788899999999999777999999999876
No 141
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=21.78 E-value=5.9e+02 Score=29.71 Aligned_cols=83 Identities=17% Similarity=0.159 Sum_probs=58.7
Q ss_pred HHHHHHHH-HHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhccCCCchhH
Q 000498 682 HLLESAST-LRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYESNEEAPD 760 (1460)
Q Consensus 682 ~wl~~a~l-aRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~l~~~~~~~~~~a~ 760 (1460)
.+...|-- ..+.|++..|..++..+...-+ .+...+ .+.+-.++.++.+|+...|+...+.++++++.+...++
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP--~s~~a~---~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYP--DSTYQP---NANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc--CCcchH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 34444443 3667899999888777644321 111111 34677899999999999999999999999887777788
Q ss_pred HHHHHHHHH
Q 000498 761 VYRLVGKWL 769 (1460)
Q Consensus 761 ll~llG~Wl 769 (1460)
++..+|.-.
T Consensus 219 Al~klg~~~ 227 (263)
T PRK10803 219 AMFKVGVIM 227 (263)
T ss_pred HHHHHHHHH
Confidence 877766644
No 142
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=20.91 E-value=6.1e+02 Score=26.37 Aligned_cols=67 Identities=10% Similarity=-0.091 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCCCchhhhhHhHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 000498 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISENYE 753 (1460)
Q Consensus 679 ~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~Ak~LWa~Ge~~~AI~~Lk~l~~~~~ 753 (1460)
....|...+.++-+.|++..|.....++..+.+ .+..+.+..+..+-..|+...|+..++..+...+
T Consensus 57 ~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p--------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 57 SWRAHIALAGTWMMLKEYTTAINFYGHALMLDA--------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 456777888888899999999888877755432 2223456678888889999999998877665443
No 143
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=20.80 E-value=2.9e+02 Score=25.52 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=0.0
Q ss_pred chhhHHhhhhHhHhHHhhccccCCCCCCCcCCC-cchHHHHHHHHHhhcCCchhhhhhhcccchh--------hHHHHHH
Q 000498 346 GSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLET-LPRHIEILVSAVTQINEPDSLYGIIQSHKLS--------SQIVTLE 416 (1460)
Q Consensus 346 ~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~-~~~~~e~L~~Iy~~IdEPD~~yGi~~~~~l~--------~~i~~yE 416 (1460)
+.|..|+.+.|..++.. ... .....-.|-.+|-+.++.+.++.+.+..... ....-|.
T Consensus 3 ~~y~~Ai~~~~k~~~~~-------------~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~ 69 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELD-------------PTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLL 69 (84)
T ss_dssp T-HHHHHHHHHHHHHHH-------------CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHC-------------CCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q ss_pred hhCCHHHHHHHHHHH
Q 000498 417 HEGNWSKALEYYELQ 431 (1460)
Q Consensus 417 ~eg~W~kAL~~Yd~~ 431 (1460)
+.|+|++|+..|+..
T Consensus 70 ~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 70 KLGKYEEAIKALEKA 84 (84)
T ss_dssp HTT-HHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhcC
No 144
>cd00180 PKc Catalytic domain of Protein Kinases. Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which
Probab=20.67 E-value=2.5e+02 Score=29.38 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=24.6
Q ss_pred ccCCCCCCeeEEecCCCeEEEeecchhhc
Q 000498 1282 GLGDRHAMNILIDQATAEVVHIDLGVAFE 1310 (1460)
Q Consensus 1282 gLGDRH~~NILld~~tG~vvhIDfg~~f~ 1310 (1460)
--||-+|+||+++..+|.+.=+|||.+-.
T Consensus 114 ~H~dl~~~ni~~~~~~~~~~l~d~~~~~~ 142 (215)
T cd00180 114 IHRDLKPENILLDSDNGKVKLADFGLSKL 142 (215)
T ss_pred eccCCCHhhEEEeCCCCcEEEecCCceEE
Confidence 34899999999997689999999997743
No 145
>PLN02421 phosphotransferase, alcohol group as acceptor/kinase
Probab=20.51 E-value=1.2e+02 Score=36.37 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=29.1
Q ss_pred hhheeccCCCCCCeeEEecCCCeEEEeecchhh
Q 000498 1277 VGYIVGLGDRHAMNILIDQATAEVVHIDLGVAF 1309 (1460)
Q Consensus 1277 vgyIlgLGDRH~~NILld~~tG~vvhIDfg~~f 1309 (1460)
...++.=+|-++.|||++...|++.-|||.++.
T Consensus 180 ~~~v~CHnDl~~~NiL~~~~~~~l~lID~EYag 212 (330)
T PLN02421 180 APVVFAHNDLLSGNLMLNEDEGKLYFIDFEYGS 212 (330)
T ss_pred CCeEEEECCCCcccEEEeCCCCcEEEEcccccC
Confidence 456889999999999999777899999999874
No 146
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=20.30 E-value=3.5e+02 Score=33.91 Aligned_cols=83 Identities=18% Similarity=0.161 Sum_probs=63.6
Q ss_pred HHHHHHHHhchhhHHhhhhHhHhHHhhccccCCCCCCCcCCCcchHHHHHHHHHhhcCCchhhhhhhccc---------c
Q 000498 337 RVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH---------K 407 (1460)
Q Consensus 337 ~lA~aA~~C~ay~tALly~E~~~~~~~~~~~~~~~~~s~~~~~~~~~e~L~~Iy~~IdEPD~~yGi~~~~---------~ 407 (1460)
-++++=.-=+|++=||+|.--.+. +.+. .+-....|=++|.+|+.++-+.||-... -
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~-------~kPn-------DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALE-------LKPN-------DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHh-------cCCC-------chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 377888888999999999976432 1221 2345678999999999999999996421 1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHh
Q 000498 408 LSSQIVTLEHEGNWSKALEYYELQVR 433 (1460)
Q Consensus 408 l~~~i~~yE~eg~W~kAL~~Yd~~l~ 433 (1460)
+-....-||..++..+|-.+|+.-++
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33455789999999999999999877
Done!