Query 000498
Match_columns 1460
No_of_seqs 345 out of 1508
Neff 6.9
Searched_HMMs 29240
Date Tue Mar 26 16:37:18 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000498.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_272-275//hhsearch_pdb/000498hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x6h_A GH13170P, VPS34, phosph 1.0 1 1 545.5 30.8 394 969-1459 277-693 (696)
2 1e7u_A Phosphatidylinositol 3- 1.0 1 1 533.3 28.7 410 896-1377 446-903 (961)
3 2y3a_A Phosphatidylinositol-4, 1.0 1 1 531.2 31.5 410 896-1377 593-1039(1092)
4 2wxf_A Phosphatidylinositol-4, 1.0 1 1 529.4 30.5 410 896-1377 440-887 (940)
5 3ls8_A Phosphatidylinositol 3- 1.0 1 1 522.2 26.9 378 970-1445 208-603 (614)
6 3hhm_A Phosphatidylinositol-4, 1.0 1 1 512.7 24.1 446 896-1445 586-1071(1091)
7 1w1n_A Phosphatidylinositol 3- 1.0 1 1 90.0 1.6 33 1428-1460 1-33 (33)
8 2xpi_A Anaphase-promoting comp 1.0 1 1 27.5 23.7 65 679-751 304-368 (597)
9 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 26.3 25.5 62 681-750 204-265 (388)
10 2xpi_A Anaphase-promoting comp 1.0 1 1 25.3 25.2 28 408-435 203-230 (597)
No 1
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=1.00 E-value=1 Score=545.51 Aligned_cols=394 Identities=21% Similarity=0.351 Sum_probs=290.5
Q ss_pred HHHHHHHHHHHHHHCCH---HHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Q ss_conf 99999999999984780---26667863113771000000132013224699999999999985------7999999999
Q 000498 969 QFALVSLVKKMAIDHPY---HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSS------YHGAIIRQMK 1039 (1460)
Q Consensus 969 ~~~L~~Ll~~i~~~hP~---h~l~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~------~~~~~~~~~~ 1039 (1460)
...|..+|++.+...|. +.+|.|.+....+.... .+....... -....+.++..+.. .....+....
T Consensus 277 ~s~La~FLl~rA~~n~~i~h~l~W~L~~e~~~~~~~~---~~~~~~~~~-~~~il~~~l~~l~~g~~~~~~~~~~l~~Q~ 352 (696)
T 2x6h_A 277 PANLCTFLIQRACTNATLANYFYWYLSIEVEEVESVR---KQDERAHDM-YAMVLKMFLKVLENGNFNLRGIFYNLRKQR 352 (696)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHHHHHHHCC--------CCHHHHHHH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCC---CCCCHHHHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 7779999999985286668999987571234763112---113068999-999999999986334753189999999999
Q ss_pred HHHHHHHHHHHHHHC-CCCCCCCCC-CHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEECCCC
Q ss_conf 999999999743203-333223444-114442002--367566655556889877667888672011256-389832888
Q 000498 1040 QMVDVYIKLAELETR-REDTNKRIQ-LPREIRCLR--QLELVPVVTATVPIDCTCQYNEGSFPYFKGLAE-SVMVMNGIN 1114 (1460)
Q Consensus 1040 ~l~~~~~~la~~~~~-~~~~~~~~~-l~~~~~~l~--~l~~~p~~t~~lp~~~~~~~~~~~~~~i~~f~~-~~~v~~s~~ 1114 (1460)
.+++.+.+++..... +....++.. +...+.... ..++..+....+|.+|. ++|.+|.+ .+.|++|++
T Consensus 353 ~~~~~L~~i~~~ik~~~~~~~~k~e~L~~~L~~~~~~~~~l~~~~~~~lP~~p~--------v~I~~~~~~~~~V~~S~~ 424 (696)
T 2x6h_A 353 RFIDELVKLVKLVAKEPGNRNKKTEKFQKLLAEQDMFKVNFTNFEPIPFPLDPE--------IYITKIVPMRTSLFKSAL 424 (696)
T ss_dssp HHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHSTTSSSSCTTSCCCEECSSCTT--------SEEEEECGGGCEECSSSS
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCC--------EEEEEEECCEEEECCCCC
T ss_conf 999999999998711686378899999998532111000102378756799987--------699999437179833046
Q ss_pred CCEEEEEEECC-CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCEEEECCCCCCEEEECCCCCC
Q ss_conf 61599999079-95686543428631147799999999999999618122367710002128871899735788289875
Q 000498 1115 APKVVECFGSD-GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVP 1193 (1460)
Q Consensus 1115 ~Pk~i~~~gsd-G~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~s 1193 (1460)
+||+|+|+|+| |+.|.||+|+| ||+|||+|+||+|++||.+|++++ |+|.+++|+|||+++++||||||+ +.|
T Consensus 425 ~P~~l~~~gsD~G~~y~~i~K~g-DDLRQD~rv~Ql~~lmn~il~~~~----~~L~i~~Y~Vipls~~~GLIE~V~-s~t 498 (696)
T 2x6h_A 425 MPAKLTFVTSIAHHEYAAIFKHG-DDLRQDQLILQMITLMDKLLRREN----LDLKLTPYKVLATSSKHGFLQYVD-SCT 498 (696)
T ss_dssp CCEEEEEEETTTTCEEEEEEECS-SCTHHHHHHHHHHHHHHHHHHHTT----CCCCCCCCCEEESSTTCEEEECCC-CEE
T ss_pred CCEEEEEEECCCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHHHHCC----CCCEEECCEEEECCCCCCEEEECC-CCC
T ss_conf 97489999637887045787437-654216899999999999998479----983775307996367787234579-755
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH----HHHHHHHH
Q ss_conf 58875210138998877688850167877520153768999999986232348999999808955899----99999897
Q 000498 1194 LGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWF----EKRLAYTR 1269 (1460)
Q Consensus 1194 l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w~----~~R~~ft~ 1269 (1460)
+++|+... + .+++||.+.|+++..|| .+|++|++
T Consensus 499 l~~i~~~~----------~--------------------------------~l~~~f~~~~p~~~~~~~~~~~ar~nF~~ 536 (696)
T 2x6h_A 499 VAEVLARE----------G--------------------------------NIHNFFRKHHPCDNGPYGISAEVMDTYIK 536 (696)
T ss_dssp HHHHHHHS----------S--------------------------------SHHHHHHHHSBCTTSSSSBCHHHHHHHHH
T ss_pred HHHHHHHC----------C--------------------------------HHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 99998706----------7--------------------------------09999998788962012427999999999
Q ss_pred HHHCCCHHHHEECCCCCCCCEEEEECCCCEEEEEECCHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCH--HHHHHH
Q ss_conf 320000234114037889970688348991999542100001467999988871013415502454443101--288899
Q 000498 1270 SVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGV--FRRCCE 1347 (1460)
Q Consensus 1270 S~A~~SivgyilgLgDRH~~NILid~~tG~v~hIDfg~~f~~g~~l~~pE~VPFRLT~niv~~mG~~g~eG~--F~~~~~ 1347 (1460)
|+|+|||+||||||||||++|||||. ||+++|||||++|+++ +.||+|||||||||+++||+.|+||. |+.+|+
T Consensus 537 SlA~~Svv~YILGlGDRH~~NILid~-tG~v~HIDFG~~f~~~---p~pe~VPFRLT~~mv~~mG~~g~eg~~~Fr~~c~ 612 (696)
T 2x6h_A 537 SCAGYCVITYLLGVGDRHLDNLLLTT-NGKLFHIDFGYILGRD---PKPMPPPMKLSKEMVEAMGGISSEHHHEFRKQCY 612 (696)
T ss_dssp HHHHHHHHHHHHTCCCCCTTTEEECT-TSCEEECCCCSCTTCC---SSSCCCSSCCCHHHHHHTTSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEC-CCCEEEEEEHHHHCCC---CCCCCCCEECCHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 99999999998348889976568807-8998988534553668---8776798631799999838977610899999999
Q ss_pred HHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 98999710959999999997118875222581679854310232213799999200034145999999998520699899
Q 000498 1348 KTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEGG 1427 (1460)
Q Consensus 1348 ~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~v~~KL~g~~~~ 1427 (1460)
.++++||++++.|++++++|++|++.+|...+. .++..+++|+....+.
T Consensus 613 ~~~~~LR~~~~~il~ll~lml~~~lp~~~~~~~-------------------------------~~i~~l~~rf~l~lse 661 (696)
T 2x6h_A 613 TAYLHLRRHANVMLNLFSLMVDATVPDIALEPD-------------------------------KAVKKVEENLQLGLTD 661 (696)
T ss_dssp HHHHHHHHTHHHHHHHHHHTTTCCCTTTTSSGG-------------------------------GHHHHHHHHHTTTSCH
T ss_pred HHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCHH-------------------------------HHHHHHHHHHCCCCCH
T ss_conf 999999867899999999997589975466878-------------------------------9999999983799999
Q ss_pred CCCCHHHHHHHHHHHHCCCH--HHHHHCCCCCCC
Q ss_conf 87699999999999901902--256207343257
Q 000498 1428 EMRSVHGQVQQLIQDAIDPE--RFCLMFPGWGAW 1459 (1460)
Q Consensus 1428 ~~lsv~~qV~~LI~~Atd~~--nL~~m~~gW~pw 1459 (1460)
-....+|..||++|.+.- ++.-++..|..|
T Consensus 662 --eea~~~~~~lI~~S~~s~~t~~~d~~h~~aq~ 693 (696)
T 2x6h_A 662 --EEAVQHLQSLLDVSITAVMPALVEQIHRFTQY 693 (696)
T ss_dssp --HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --99999999999999853448899999999999
No 2
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=1.00 E-value=1 Score=533.35 Aligned_cols=410 Identities=21% Similarity=0.278 Sum_probs=301.5
Q ss_pred HHHHHHHHHHHCCCCCC---HHHHHHH---HH--------------HCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC
Q ss_conf 99999898830189650---5677889---87--------------2054289999999730003644214422332103
Q 000498 896 LALEGYKRCLVIGDKYD---VFRLVSL---WF--------------SLSSRQNVIKNMVDTIDEVQSYKFIPLVYQIASR 955 (1460)
Q Consensus 896 ~ai~~Yl~sL~~g~~~d---v~RllsL---Wl--------------~~~~~~~v~~~i~~~l~~iPs~kfl~~~pQL~sR 955 (1460)
.|+.-+++|+.+.+... +..+|.- |= ..-.++.|.....+.+...|...++..+|||+..
T Consensus 446 ~aL~k~l~sv~w~~~~~v~e~~~lL~~~~~W~~~~~~~~~ALeLL~~~f~d~~VR~yAV~~L~~~~d~~l~~YL~QLVQa 525 (961)
T 1e7u_A 446 KAYPKLFSSVKWGQQEIVAKTYQLLAKREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLEDDDVLHYLLQLVQA 525 (961)
T ss_dssp GGHHHHHTSSCTTCHHHHHHHHHHHHCCHHHHHSCCCHHHHHHTTSTTCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 78878754567899899999999873367777889899999985687689978999999999829999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCH---HHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHH----
Q ss_conf 567855456241899999999999984780---2666786311377100000013201322469999999999998----
Q 000498 956 MGSTKDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELS---- 1028 (1460)
Q Consensus 956 l~~~~~~~~~~~f~~~L~~Ll~~i~~~hP~---h~l~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~---- 1028 (1460)
|.+... ....|..+|.+.+...+. +.+|.|.+....+ .....|. ..+++.+.
T Consensus 526 LkyE~~------~~s~L~~fLl~ra~~n~~i~h~l~W~l~~e~~~~---~~~~~r~------------~~ll~~~l~~~~ 584 (961)
T 1e7u_A 526 VKFEPY------HDSALARFLLKRGLRNKRIGHFLFWFLRSEIAQS---RHYQQRF------------AVILEAYLRGCG 584 (961)
T ss_dssp GGGCSS------SSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC---TTTHHHH------------HHHHHHHHTTSC
T ss_pred HHHCCC------CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC---HHHHHHH------------HHHHHHHHHHCC
T ss_conf 853334------6776999999998618377899998855231578---6689999------------999999986442
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC------CC-CCHHHHHHCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 57999999999999999999743203333223------44-411444200236756665-55568898776678886720
Q 000498 1029 SYHGAIIRQMKQMVDVYIKLAELETRREDTNK------RI-QLPREIRCLRQLELVPVV-TATVPIDCTCQYNEGSFPYF 1100 (1460)
Q Consensus 1029 ~~~~~~~~~~~~l~~~~~~la~~~~~~~~~~~------~~-~l~~~~~~l~~l~~~p~~-t~~lp~~~~~~~~~~~~~~i 1100 (1460)
......+..-..+++.+.+++...... ...+ +. .+...+..+.. +.+| +..+|.+|. ..|
T Consensus 585 ~~~~~~~~~q~~~~~~L~~i~~~ik~~-~~~~~~~~~~~~~~l~~~L~~l~~---i~vP~~~~lP~dP~--------v~i 652 (961)
T 1e7u_A 585 TAMLHDFTQQVQVIDMLQKVTIDIKSL-SAEKYDVSSQVISQLKQKLENLQN---LNLPQSFRVPYDPG--------LKA 652 (961)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSGGG-GCCSSCCCHHHHHHHHHHHHHHHH---TTSCSCEEETTEEE--------EEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHC---CCCCCCCCCCCCCC--------EEE
T ss_conf 989999999999999999999998764-000023116679999999986420---75898765799995--------489
Q ss_pred CCC-CCEEEEECCCCCCEEEEEEECCCC-----EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCE
Q ss_conf 112-563898328886159999907995-----68654342863114779999999999999961812236771000212
Q 000498 1101 KGL-AESVMVMNGINAPKVVECFGSDGH-----KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYK 1174 (1460)
Q Consensus 1101 ~~f-~~~~~v~~s~~~Pk~i~~~gsdG~-----~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ 1174 (1460)
.+| .+.+.|++|+++|++|+++|+||+ .|.||+|+| ||+|||+|++|+|++||.+|+++ +|+|.+++|+
T Consensus 653 ~~i~~~~~~V~~S~~~P~~l~~~g~Dg~~~~~~~~~~i~K~g-DDLRQD~~v~Ql~~lmn~il~~~----~~~L~i~~Y~ 727 (961)
T 1e7u_A 653 GALVIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHG-DDLRQDMLILQILRIMESIWETE----SLDLCLLPYG 727 (961)
T ss_dssp EEECGGGCEECSSTTCCEEEEEEESCTTCSCCCCEEEEEEES-SCCHHHHHHHHHHHHHHHHHHHT----TCCCCCCCCC
T ss_pred EEEECCEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECC-CCCCCCHHHHHHHHHHHHHHHHC----CCCEEEEEEE
T ss_conf 876334379850257956999972687756677523898458-54434364999999999998635----8882888304
Q ss_pred EEECCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88718997357882898755887521013899887768885016787752015376899999998623234899999980
Q 000498 1175 VVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERF 1254 (1460)
Q Consensus 1175 ViPLs~~~GLIE~v~~t~sl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f 1254 (1460)
|+|+++++||||||+|++|+++|+.......+ .+ -.+++++||.+.+
T Consensus 728 Vipls~~~GlIE~V~ns~tl~~I~~~~~g~~~---~f------------------------------~~~~L~~w~~~~~ 774 (961)
T 1e7u_A 728 CISTGDKIGMIEIVKDATTIAKIQQSTVGNTG---AF------------------------------KDEVLSHWLKEKC 774 (961)
T ss_dssp EEEEETTEEEEECCSSEEEHHHHHHHHSCSSS---CC------------------------------CSSHHHHHHHHHC
T ss_pred EEECCCCCCEEEECCCCCCHHHHHHHCCCCCC---CC------------------------------CHHHHHHHHHHHC
T ss_conf 99877887757765997469999985367522---24------------------------------4168999999859
Q ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHEECCCCCCCCEEEEECCCCEEEEEECCHHHCCCCC-CC-CCCCCCCCCCHHHHHC
Q ss_conf 895589999999897320000234114037889970688348991999542100001467-99-9988871013415502
Q 000498 1255 LQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LK-TPERVPFRLTRDIIDG 1332 (1460)
Q Consensus 1255 ~~~~~w~~~R~~ft~S~A~~SivgyilgLgDRH~~NILid~~tG~v~hIDfg~~f~~g~~-l~-~pE~VPFRLT~niv~~ 1332 (1460)
++++.|+.+|.+|++|+|+|||+||||||||||++|||||+ ||+++|||||++|++++. ++ .||+|||||||||+++
T Consensus 775 ~~~~~~~~ar~~F~~S~A~ySvv~YILGigDRH~~NILid~-tG~v~HIDFG~~f~~~~~~l~~~pE~vPFRLT~~mv~~ 853 (961)
T 1e7u_A 775 PIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMISE-TGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFV 853 (961)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEET-TCCEEECCCCCC----------CCCCCSSCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 98689999999999988999899897005578876568835-77789885334324686556778888984247999998
Q ss_pred CCCCCCC-----CHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 4544431-----01288899989997109599999999971188752225
Q 000498 1333 MGVTGVE-----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1377 (1460)
Q Consensus 1333 mG~~g~e-----G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~ 1377 (1460)
||+.|++ |.|+.+|+.++++||++++.|++++++|++||+.+|..
T Consensus 854 mG~~g~e~s~~fg~F~~~c~~~~~~LR~~~~~l~~ll~lm~~~~lp~~~~ 903 (961)
T 1e7u_A 854 MGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLTS 903 (961)
T ss_dssp TTCCSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHSCSSCCC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 56567766452789999999999999975899999999984699976586
No 3
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=1.00 E-value=1 Score=531.18 Aligned_cols=410 Identities=20% Similarity=0.274 Sum_probs=299.9
Q ss_pred HHHHHHHHHHHCCCCCC---HHHHHHHHHHC------------CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 99999898830189650---56778898720------------5428999999973000364421442233210356785
Q 000498 896 LALEGYKRCLVIGDKYD---VFRLVSLWFSL------------SSRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTK 960 (1460)
Q Consensus 896 ~ai~~Yl~sL~~g~~~d---v~RllsLWl~~------------~~~~~v~~~i~~~l~~iPs~kfl~~~pQL~sRl~~~~ 960 (1460)
.|+.-+++|+.+.+..+ +..++.-|=.. -.++.|.....+.+...|...++..+|||+..|.+..
T Consensus 593 ~aL~k~l~sv~w~~~~e~~e~~~lL~~W~~i~p~~ALeLL~~~f~d~~VR~yAV~~L~~~~d~~l~~yLpQLVQaLkyE~ 672 (1092)
T 2y3a_A 593 QSLPKLLLSIKWNKLEDVAQLQALLQIWPKLPPREALELLDFNYPDQYVREYAVGCLRQMSDEELSQYLLQLVQVLKYEP 672 (1092)
T ss_dssp GGHHHHHHHSCTTCHHHHHHHHHHHHTSCCCCHHHHGGGGSTTCCCTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 78899984168899889999999970589999999998668658998999999999973999999999999999986065
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCH---HHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHH----HHHHH
Q ss_conf 5456241899999999999984780---2666786311377100000013201322469999999999998----57999
Q 000498 961 DALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELS----SYHGA 1033 (1460)
Q Consensus 961 ~~~~~~~f~~~L~~Ll~~i~~~hP~---h~l~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~----~~~~~ 1033 (1460)
. ....|..+|++.+...|. +.+|.|.+...... .+.+. ..+++.+. .....
T Consensus 673 ~------~~s~L~~fLl~ra~~n~~i~h~l~W~L~~e~~~~~----~~~r~------------~~lle~~~~~~~~~~~~ 730 (1092)
T 2y3a_A 673 F------LDCALSRFLLERALDNRRIGQFLFWHLRSEVHTPA----VSVQF------------GVILEAYCRGSVGHMKV 730 (1092)
T ss_dssp S------SSCHHHHHHHHHHTSCSSHHHHHHHHHHHHHTSHH----HHHHH------------HHHHHHHHHHTTTTHHH
T ss_pred C------CCCHHHHHHHHHHHHCHHHHHHHHHHEEECCCCCH----HHHHH------------HHHHHHHHHHCHHHHHH
T ss_conf 5------65679999999986485778999977122206915----89999------------99999998426788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHC---CCCCCCCCC-CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEE
Q ss_conf 999999999999999743203---333223444-114442002367566655556889877667888672011256-389
Q 000498 1034 IIRQMKQMVDVYIKLAELETR---REDTNKRIQ-LPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAE-SVM 1108 (1460)
Q Consensus 1034 ~~~~~~~l~~~~~~la~~~~~---~~~~~~~~~-l~~~~~~l~~l~~~p~~t~~lp~~~~~~~~~~~~~~i~~f~~-~~~ 1108 (1460)
+.+|. .+++.+..++..... +....++.. +.+.+........ ++...+|.+|. +.|.+|.+ .+.
T Consensus 731 l~~Q~-~~~~~L~~is~~ik~~~~~~~r~k~~e~L~~~l~~~~~~~~--~~~~~lP~~P~--------v~I~~~~~~~~~ 799 (1092)
T 2y3a_A 731 LSKQV-EALNKLKTLNSLIKLNAVKLSRAKGKEAMHTCLKQSAYREA--LSDLQSPLNPC--------VILSELYVEKCK 799 (1092)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHSTTHHHH--TSSSCCSSCSS--------BCCCCCCGGGCE
T ss_pred HHHHH-HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHC--CCCCCCCCCCC--------EEEEEEECCCEE
T ss_conf 99999-99999999999985246544378899999998604211213--78987899975--------478888447238
Q ss_pred EECCCCCCEEEEEEECC--CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCEEEECCCCCCEEE
Q ss_conf 83288861599999079--9568654342863114779999999999999961812236771000212887189973578
Q 000498 1109 VMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILE 1186 (1460)
Q Consensus 1109 v~~s~~~Pk~i~~~gsd--G~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE 1186 (1460)
|++|+++|++|+++|+| |+.|.||+|+| ||+|||+|++|+|++||.+|++++ |+|.+++|+|+|+++++||||
T Consensus 800 V~~S~~~P~rL~~~gsD~~G~~y~~L~K~g-DDLRQD~rv~Ql~~lmn~ll~~~~----~~L~i~~Y~Vipls~~~GLIE 874 (1092)
T 2y3a_A 800 YMDSKMKPLWLVYSSRAFGEDSVGVIFKNG-DDLRQDMLTLQMLRLMDLLWKEAG----LDLRMLPYGCLATGDRSGLIE 874 (1092)
T ss_dssp ECSSTTCCEEEEEECTTTSSSEEEEEECCS-SCCHHHHHHHHHHHHHHHHHHHHS----CCCCCCCCCEECCSSSCCEEE
T ss_pred EECCCCCCEEEEEEECCCCCCEEEEEEECC-CCCCHHHHHHHHHHHHHHHHHHCC----CCEEEECCEEEEECCCCCEEE
T ss_conf 803112856999993377886145798448-321124899999999999998489----881886334898459888575
Q ss_pred ECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 82898755887521013899887768885016787752015376899999998623-23489999998089558999999
Q 000498 1187 WVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENF-RPVLHYFFLERFLQPAYWFEKRL 1265 (1460)
Q Consensus 1187 ~v~~t~sl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~-~pvl~~~f~~~f~~~~~w~~~R~ 1265 (1460)
||+|+.|+++|+.... +... . ..+ .+++++||.+.+ .++.|+.+|.
T Consensus 875 ~V~ns~TL~~I~~~~~---~~~~---~--------------------------~~f~~~~L~~~~~~~~-~~~~~~~ar~ 921 (1092)
T 2y3a_A 875 VVSTSETIADIQLNSS---NVAA---T--------------------------AAFNKDALLNWLKEYN-SGDDLDRAIE 921 (1092)
T ss_dssp CCTTCCBHHHHHSSSC---TTTT---T--------------------------SCSSTTHHHHHHHHHC-CTHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHC---CCHH---H--------------------------HCCCCHHHHHHHHHHC-CHHHHHHHHH
T ss_conf 5799745999998635---6202---2--------------------------1048467999999769-8888999999
Q ss_pred HHHHHHHCCCHHHHEECCCCCCCCEEEEECCCCEEEEEECCHHHCCCC-CCC-CCCCCCCCCCHHHHHCCCCC--CCC--
Q ss_conf 989732000023411403788997068834899199954210000146-799-99888710134155024544--431--
Q 000498 1266 AYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL-MLK-TPERVPFRLTRDIIDGMGVT--GVE-- 1339 (1460)
Q Consensus 1266 ~ft~S~A~~SivgyilgLgDRH~~NILid~~tG~v~hIDfg~~f~~g~-~l~-~pE~VPFRLT~niv~~mG~~--g~e-- 1339 (1460)
+|++|+|+|||+||||||||||++|||||+ ||+++|||||++|++++ .+. .||+|||||||||+++||+. |.+
T Consensus 922 nF~~SlA~ySvv~YILGlGDRH~~NILid~-tG~v~HIDFG~~f~~~~~~l~~~pE~VPFRLT~~mv~~mg~g~~~~s~~ 1000 (1092)
T 2y3a_A 922 EFTLSCAGYCVASYVLGIGDRHSDNIMVKK-TGQLFHIDFGHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTEK 1000 (1092)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCTTTEEECT-TSCEEECCCSCCSSCCCCGGGCCCCCCCCCCCHHHHHHHHTTCSSCSSS
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEC-CCCEEEEEEHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
T ss_conf 999999999999998117789976378935-7878998423344037766888888898047799999970687777754
Q ss_pred -CHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf -01288899989997109599999999971188752225
Q 000498 1340 -GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1377 (1460)
Q Consensus 1340 -G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~ 1377 (1460)
|.|+.+|+.++++||++++.|++++++|++|||.+|..
T Consensus 1001 fg~Fr~~c~~a~~~LR~~~~~Il~ll~lml~~~Lp~~~~ 1039 (1092)
T 2y3a_A 1001 FGRFRQCCEDAYLILRRHGNLFITLFALMLTAGLPELTS 1039 (1092)
T ss_dssp TTHHHHHHHHHHHHHHHTHHHHHHHHHHTSTTCCSSCSS
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 225999999999999868899999999994799953353
No 4
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=1.00 E-value=1 Score=529.39 Aligned_cols=410 Identities=17% Similarity=0.242 Sum_probs=298.3
Q ss_pred HHHHHHHHHHHCCCCCC---HHHHHHHHHH------------CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 99999898830189650---5677889872------------05428999999973000364421442233210356785
Q 000498 896 LALEGYKRCLVIGDKYD---VFRLVSLWFS------------LSSRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTK 960 (1460)
Q Consensus 896 ~ai~~Yl~sL~~g~~~d---v~RllsLWl~------------~~~~~~v~~~i~~~l~~iPs~kfl~~~pQL~sRl~~~~ 960 (1460)
.|+.-+++|+.+.+..+ +..++.-|=. .-.++.|.....+.+.+.|...++..+|||++.|.++.
T Consensus 440 ~aL~~~l~sv~w~~~~~~~~~~~ll~~W~~~~~~~ALeLL~~~f~d~~Vr~yAv~~L~~~~d~~l~~yL~QLVQaLkyE~ 519 (940)
T 2wxf_A 440 EALARLLLVTKWNKHEDVAQMLYLLCSWPELPVLSALELLDFSFPDCYVGSFAIKSLRKLTDDELFQYLLQLVQVLKYES 519 (940)
T ss_dssp GGHHHHHTTSCTTCHHHHHHHHHHHHTCCCCCHHHHHHHTSTTCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
T ss_conf 68889880147899899999999970578999999998658758998999999999872998999999999999986054
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCH---HHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHH----HHHHH
Q ss_conf 5456241899999999999984780---2666786311377100000013201322469999999999998----57999
Q 000498 961 DALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELS----SYHGA 1033 (1460)
Q Consensus 961 ~~~~~~~f~~~L~~Ll~~i~~~hP~---h~l~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~----~~~~~ 1033 (1460)
. ....|..+|.+.+...|. +.+|.|.+...... .+.|. ..+++.+. .....
T Consensus 520 ~------~~s~L~~fLl~ra~~n~~i~h~l~W~l~~e~~~~~----~~~r~------------~~ile~~~~~~~~~~~~ 577 (940)
T 2wxf_A 520 Y------LDCELTKFLLGRALANRKIGHFLFWHLRSEMHVPS----VALRF------------GLIMEAYCRGSTHHMKV 577 (940)
T ss_dssp S------SSCHHHHHHHHHHHHCHHHHHHHHHHHHTTTTCHH----HHHHH------------HHHHHHHHHHCHHHHHH
T ss_pred C------CCCHHHHHHHHHHHHCHHHHHHHHHHHEECCCCCH----HHHHH------------HHHHHHHHHHCHHHHHH
T ss_conf 4------65589999999987575778999988310316906----99999------------99999998426788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHC---CCCCCCCC-CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEE
Q ss_conf 999999999999999743203---33322344-411444200236756665555688987766788867201125-6389
Q 000498 1034 IIRQMKQMVDVYIKLAELETR---REDTNKRI-QLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLA-ESVM 1108 (1460)
Q Consensus 1034 ~~~~~~~l~~~~~~la~~~~~---~~~~~~~~-~l~~~~~~l~~l~~~p~~t~~lp~~~~~~~~~~~~~~i~~f~-~~~~ 1108 (1460)
+.+| ..+++.+..++..... +....++. .+.+.+........ ++...+|.+|. ..|.+|. +.+.
T Consensus 578 l~~q-~~~~~~L~~i~~~ik~~~~~~~r~k~~~~L~~~l~~~~~~~~--~~~~~lP~~P~--------~~I~~~~~~~~~ 646 (940)
T 2wxf_A 578 LMKQ-GEALSKLKALNDFVKVSSQKTTKPQTKEMMHMCMRQETYMEA--LSHLQSPLDPS--------TLLEEVCVEQCT 646 (940)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHTSHHHHHH--HSSEEETTEEE--------EEECEECGGGCE
T ss_pred HHHH-HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHC--CCCCCCCCCCC--------EEEEEECCCCEE
T ss_conf 9999-999999999999985246533178999999998714112330--68987899986--------257776067148
Q ss_pred EECCCCCCEEEEEEECC---CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCEEEECCCCCCEE
Q ss_conf 83288861599999079---956865434286311477999999999999996181223677100021288718997357
Q 000498 1109 VMNGINAPKVVECFGSD---GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGIL 1185 (1460)
Q Consensus 1109 v~~s~~~Pk~i~~~gsd---G~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GLI 1185 (1460)
|++|+++|++|+++|+| |+.|.||+|+| ||+|||+|+||+|++||.+|++++ |+|.+++|+|+|+++++|||
T Consensus 647 V~~S~~~P~~l~~~gsD~~~G~~~~~i~K~g-DDLRqD~rv~Ql~~lmn~il~~~~----~~L~i~~Y~Vipls~~~GlI 721 (940)
T 2wxf_A 647 FMDSKMKPLWIMYSSEEAGSAGNVGIIFKNG-DDLRQDMLTLQMIQLMDVLWKQEG----LDLRMTPYGCLPTGDRTGLI 721 (940)
T ss_dssp ECSSTTCCEEEEEECTTTGGGGCEEEEEEES-SCCHHHHHHHHHHHHHHHHHHHTT----CCCCCCCCCEEEEETTEEEE
T ss_pred ECCCCCCCEEEEEEECCCCCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHHHHCC----CCEEEEEEEEEEECCCCCEE
T ss_conf 8331128749999834767786323798337-543312899999999999998389----97189951499823778868
Q ss_pred EECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 882898755887521013899887768885016787752015376899999998623-2348999999808955899999
Q 000498 1186 EWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENF-RPVLHYFFLERFLQPAYWFEKR 1264 (1460)
Q Consensus 1186 E~v~~t~sl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~-~pvl~~~f~~~f~~~~~w~~~R 1264 (1460)
|||+|+.|+++|+.... +... . ..+ .+++++||.+.++ ++.|+.+|
T Consensus 722 E~V~ns~tl~~I~~~~~---~~~~---~--------------------------~~f~~~~l~~~~~~~~~-~~~~~~a~ 768 (940)
T 2wxf_A 722 EVVLHSDTIANIQLNKS---NMAA---T--------------------------AAFNKDALLNWLKSKNP-GEALDRAI 768 (940)
T ss_dssp ECCSSEEEHHHHHTCCS---SSTT---C--------------------------CSSGGGHHHHHHHHHSC-TTHHHHHH
T ss_pred EECCCCCCHHHHHHHHC---CCHH---H--------------------------HCCCCHHHHHHHHHHCC-HHHHHHHH
T ss_conf 67799736999998616---6302---2--------------------------02585569999997598-88899999
Q ss_pred HHHHHHHHCCCHHHHEECCCCCCCCEEEEECCCCEEEEEECCHHHCCCC-CCCC-CCCCCCCCCHHHHHCCCCC--CCC-
Q ss_conf 9989732000023411403788997068834899199954210000146-7999-9888710134155024544--431-
Q 000498 1265 LAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL-MLKT-PERVPFRLTRDIIDGMGVT--GVE- 1339 (1460)
Q Consensus 1265 ~~ft~S~A~~SivgyilgLgDRH~~NILid~~tG~v~hIDfg~~f~~g~-~l~~-pE~VPFRLT~niv~~mG~~--g~e- 1339 (1460)
.+|++|+|+|||+||||||||||++|||||+ ||+++|||||++|++++ .+.+ ||+|||||||||+++||+. |.+
T Consensus 769 ~~F~~S~A~~Svv~YILGlgDRH~~NILid~-tG~v~HIDFG~~f~~~~~~l~~~pE~VPFRLT~~mv~~mg~g~~~~s~ 847 (940)
T 2wxf_A 769 EEFTLSCAGYCVATYVLGIGDRHSDNIMIRE-SGQLFHIDFGHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSE 847 (940)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCGGGEEEET-TSCEEECCCCCCTTCC---------CCCCCCCHHHHHHHTTTCSCCHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC-CCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
T ss_conf 9999988999999998006789844379955-887898841333304566568888889814779999997078777774
Q ss_pred --CHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf --01288899989997109599999999971188752225
Q 000498 1340 --GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1377 (1460)
Q Consensus 1340 --G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~ 1377 (1460)
|.|+.+|+.++++||++++.|++++++|++||+++|..
T Consensus 848 ~~g~Fr~~c~~~~~~LR~~~~~ll~ll~lml~~~lp~~~~ 887 (940)
T 2wxf_A 848 KFERFRGYCERAYTILRRHGLLFLHLFALMRAAGLPELSC 887 (940)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHGGGCCTTSCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 3456999999999999867899999999995799954576
No 5
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=1.00 E-value=1 Score=522.22 Aligned_cols=378 Identities=22% Similarity=0.360 Sum_probs=269.6
Q ss_pred HHHHHHHHHHHHHCCH--HHH-HHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Q ss_conf 9999999999984780--266-678631137710000001320132246999999999999857------9999999999
Q 000498 970 FALVSLVKKMAIDHPY--HTI-FQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSY------HGAIIRQMKQ 1040 (1460)
Q Consensus 970 ~~L~~Ll~~i~~~hP~--h~l-~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~------~~~~~~~~~~ 1040 (1460)
+.|..+|++.+...|. |-+ |.|.+.... .... .+...+.+... ...+.++..+... ....+..-..
T Consensus 208 s~La~FLi~RAl~n~~ig~~lyW~L~~E~~~-~~~~---~~~~~~~~~Y~-~vl~~~l~~l~~g~~~~~~~r~~L~~Q~~ 282 (614)
T 3ls8_A 208 QDLCTFLISRACKNSTLANYLYWYVIVECED-QDTQ---QRDPKTHEMYL-NVMRRFSQALLKGDKSVRVMRSLLAAQQT 282 (614)
T ss_dssp CCHHHHHHHHHHTCHHHHHHHHHHHHHHHHC-HHHH---HHCHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHEEEECCC-CCCC---CCCHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 8389999998734888887777660232357-5322---11227889999-99999999987268146899999999999
Q ss_pred HHHHHHHHHHHHHC-CCCCCCCCC-CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEECCCCCCE
Q ss_conf 99999999743203-333223444-114442002367566655556889877667888672011256-389832888615
Q 000498 1041 MVDVYIKLAELETR-REDTNKRIQ-LPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAE-SVMVMNGINAPK 1117 (1460)
Q Consensus 1041 l~~~~~~la~~~~~-~~~~~~~~~-l~~~~~~l~~l~~~p~~t~~lp~~~~~~~~~~~~~~i~~f~~-~~~v~~s~~~Pk 1117 (1460)
+++.+..++..... .....++.. +...+.......+..+.+..+|.+|. ++|.+|.| .+.|++|+++||
T Consensus 283 ~~~~L~~l~~~v~~~~~~~~kk~e~L~~~L~~~~~~~l~~~~~~~lPl~P~--------v~I~~i~p~~~~V~~Sk~~P~ 354 (614)
T 3ls8_A 283 FVDRLVHLMKAVQRESGNRKKKNERLQALLGDNEKMNLSDVELIPLPLEPQ--------VKIRGIIPETATLFKSALMPA 354 (614)
T ss_dssp HHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHCHHHHCCSSCSSEEETTEEE--------EEEEEECGGGCEECSSTTCCE
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCC--------EEEEEEECCEEEEEECCCCEE
T ss_conf 999999999999850243688999999997150010124578878999986--------699999658068851146827
Q ss_pred EEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCEEEECCCCCCEEEECCCCCCHHHH
Q ss_conf 99999079956865434286311477999999999999996181223677100021288718997357882898755887
Q 000498 1118 VVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDY 1197 (1460)
Q Consensus 1118 ~i~~~gsdG~~y~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GLIE~v~~t~sl~~i 1197 (1460)
+|+|+|+||+.|.+++|+| ||+|||+++||+|++||.+|+++. ++|++++|+|||+++++||||||++ .++.++
T Consensus 355 ~l~~~gsDG~~y~~i~K~g-DDLRQD~~~~Ql~~l~n~il~~~~----ldL~i~~Y~Vipls~~~GlIE~V~~-~tl~~i 428 (614)
T 3ls8_A 355 QLFFKTEDGGKYPVIFKHG-DDLRQDQLILQIISLMDKLLRKEN----LDLKLTPYKVLATSTKHGFMQFIQS-VPVAEV 428 (614)
T ss_dssp EEEEEETTSCEEEEEEEES-SCCHHHHHHHHHHHHHHHHHHHTT----CCCCCCCCCEEESSSSEEEEECCCC-EEHHHH
T ss_pred EEEEECCCCCEEEEEEECC-CCCHHHHHHHHHHHHHHHHHHHCC----CCCEEECCEEEEECCCCCEEEEECC-CCHHHH
T ss_conf 9999926998877887438-851398999999999999999669----9844541079994598765887178-658999
Q ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHHHHC
Q ss_conf 521013899887768885016787752015376899999998623234899999980895589----9999998973200
Q 000498 1198 LIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYW----FEKRLAYTRSVAA 1273 (1460)
Q Consensus 1198 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~~~~w----~~~R~~ft~S~A~ 1273 (1460)
+... ..+.+||.+.++++..| +.+|.+|++|+|+
T Consensus 429 l~~~------------------------------------------~~l~~~f~~~~~~~~~~~~~~~~a~~nF~~S~A~ 466 (614)
T 3ls8_A 429 LDTE------------------------------------------GSIQNFFRKYAPSENGPNGISAEVMDTYVKSCAG 466 (614)
T ss_dssp HHHT------------------------------------------SSHHHHHHHHSBCTTSGGGBCHHHHHHHHHHHHH
T ss_pred HHCC------------------------------------------CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 8705------------------------------------------8699999985888666544559999999998777
Q ss_pred CCHHHHEECCCCCCCCEEEEECCCCEEEEEECCHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCC--HHHHHHHHHHH
Q ss_conf 0023411403788997068834899199954210000146799998887101341550245444310--12888999899
Q 000498 1274 SSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEG--VFRRCCEKTLS 1351 (1460)
Q Consensus 1274 ~SivgyilgLgDRH~~NILid~~tG~v~hIDfg~~f~~g~~l~~pE~VPFRLT~niv~~mG~~g~eG--~F~~~~~~t~~ 1351 (1460)
|||+||||||||||++||||| .||+++|||||++|+++ +.||+||||||+||+++||++|+|| .|+.+|+.++.
T Consensus 467 ySvv~YILGigDRH~~NILld-~tG~v~HIDFG~~f~~~---p~pe~vPFRLT~~mv~~mG~~~~e~f~~Fr~~c~~~~~ 542 (614)
T 3ls8_A 467 YCVITYILGVGDRHLDNLLLT-KTGKLFHIDFGYILGRD---PKPLPPPMKLNKEMVEGMGGTQSEQYQEFRKQCYTAFL 542 (614)
T ss_dssp HHHHHHHHTCCCCCTTSEEEC-TTSCEEECCCSSCTTCC---SSSSCCSSCCCHHHHHHTTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHEEEECCCCCCCCEEEC-CCCCEEEEEHHHHHCCC---CCCCCCCEECCHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 767510323468887666673-78988664117765358---87788874348999998399887218899999999999
Q ss_pred HHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 97109599999999971188752225816798543102322137999992000341459999999985206998998769
Q 000498 1352 VMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEGGEMRS 1431 (1460)
Q Consensus 1352 ~Lr~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~v~~KL~g~~~~~~ls 1431 (1460)
+||+|.+.|++++++|+.+++.+|...+.+ ++..+++++.--.+. --
T Consensus 543 ~LR~~~~~il~l~~lM~~s~lp~~~~~~~~-------------------------------~i~~l~~rf~l~lse--~e 589 (614)
T 3ls8_A 543 HLRRYSNLILNLFSLMVDANIPDIALEPDK-------------------------------TVKKVQDKFRLDLSD--EE 589 (614)
T ss_dssp HHHHTHHHHHHHHHTTTTSCCHHHHTSGGG-------------------------------HHHHHHHHTTTTSCH--HH
T ss_pred HHHHCHHHHHHHHHHHHCCCCCCCCCCHHH-------------------------------HHHHHHHHCCCCCCH--HH
T ss_conf 998777899999999705999744557589-------------------------------999999973899999--99
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999999999019
Q 000498 1432 VHGQVQQLIQDAID 1445 (1460)
Q Consensus 1432 v~~qV~~LI~~Atd 1445 (1460)
...++..||+.+.+
T Consensus 590 a~~~~~~lI~~S~~ 603 (614)
T 3ls8_A 590 AVHYMQSLIDESVH 603 (614)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999885
No 6
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=1.00 E-value=1 Score=512.72 Aligned_cols=446 Identities=18% Similarity=0.263 Sum_probs=316.0
Q ss_pred HHHHHHHHHHHCCCCCC---HHHHHHHHHH------------CCCHHHHHHHHHHHH-CCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999898830189650---5677889872------------054289999999730-0036442144223321035678
Q 000498 896 LALEGYKRCLVIGDKYD---VFRLVSLWFS------------LSSRQNVIKNMVDTI-DEVQSYKFIPLVYQIASRMGST 959 (1460)
Q Consensus 896 ~ai~~Yl~sL~~g~~~d---v~RllsLWl~------------~~~~~~v~~~i~~~l-~~iPs~kfl~~~pQL~sRl~~~ 959 (1460)
.|+.-+++|+.+.+... +..+|.-|=. .-.++.|.....+.+ ...|....+..+|||+.-|.+.
T Consensus 586 ~aL~k~L~sV~W~~~~e~~e~~~LL~~W~~i~~~~ALeLL~~~f~d~~VR~yAV~~L~~~~~ddeLl~YLlQLVQALKyE 665 (1091)
T 3hhm_A 586 EILPKLLLSVKWNSRDEVAQMYCLVKDWPPIKPEQAMELLDCNYPDPMVRGFAVRCLEKYLTDDKLSQYLIQLVQVLKYE 665 (1091)
T ss_dssp GGHHHHHTTSCTTCHHHHHHHHHHHHTCCCCCHHHHHHTTSTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
T ss_conf 68889863278899899999999985578899889998576668998999999999875488899999999999997014
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCH---HHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55456241899999999999984780---266678631137710000001320132246999999999999857999999
Q 000498 960 KDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSYHGAIIR 1036 (1460)
Q Consensus 960 ~~~~~~~~f~~~L~~Ll~~i~~~hP~---h~l~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 1036 (1460)
. .....|..+|++.|...|. +.+|.|.+...... ...|...++ +.++.........+.+
T Consensus 666 ~------~~ds~La~FLl~RAl~n~~igh~lfW~L~~E~~~~~----~~~r~~~lL--------e~~~~~~~~~~~~l~r 727 (1091)
T 3hhm_A 666 Q------YLDNLLVRFLLKKALTNQRIGHFFFWHLKSEMHNKT----VSQRFGLLL--------ESYCRACGMYLKHLNR 727 (1091)
T ss_dssp S------SSSCHHHHHHHHHHTTCHHHHHHHHHHHHTTTTCTT----THHHHHHHH--------HHHHHHSCTHHHHHHH
T ss_pred C------CCCCHHHHHHHHHHHHCHHHHHHHHHHEEECCCCCH----HHHHHHHHH--------HHHHHHCHHHHHHHHH
T ss_conf 3------355489999999986097888888777011025830----789999999--------9998518999999999
Q ss_pred HHHHHHHHHHHHHHHHHC--CCCCCCC-C-CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEEC
Q ss_conf 999999999999743203--3332234-4-4114442002367566655556889877667888672011256-389832
Q 000498 1037 QMKQMVDVYIKLAELETR--REDTNKR-I-QLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAE-SVMVMN 1111 (1460)
Q Consensus 1037 ~~~~l~~~~~~la~~~~~--~~~~~~~-~-~l~~~~~~l~~l~~~p~~t~~lp~~~~~~~~~~~~~~i~~f~~-~~~v~~ 1111 (1460)
|+ .+++.+..++..... +....++ . .+...+......+.. ....+|.+|. ..|.+|.+ .+.|++
T Consensus 728 Q~-~~~~~L~~is~~ik~~~~~~~~~~k~~~L~~~L~~~~~~~~~--~~~~lPl~P~--------~~I~~i~~~~~~V~~ 796 (1091)
T 3hhm_A 728 QV-EAMEKLINLTDILKQEKKDETQKVQMKFLVEQMRRPDFMDAL--QGFLSPLNPA--------HQLGNLRLEECRIMS 796 (1091)
T ss_dssp HH-HHHHHHHHHHHHTTSTTCCSCHHHHHHHHHHHHHSHHHHHHS--SSEEETTEEE--------EEECSBCGGGCEECC
T ss_pred HH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHCC--CCCCCCCCCC--------EEEEEEEECEEEEEE
T ss_conf 99-999999999999863144433688999999998351101024--6788999950--------089898615479862
Q ss_pred CCCCCEEEEEEECC--CCEE----EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCEEEECCCCCCEE
Q ss_conf 88861599999079--9568----65434286311477999999999999996181223677100021288718997357
Q 000498 1112 GINAPKVVECFGSD--GHKY----RQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGIL 1185 (1460)
Q Consensus 1112 s~~~Pk~i~~~gsd--G~~y----~~L~K~G~dDlRqD~r~~Qlf~liN~lL~~~~et~~r~L~i~tY~ViPLs~~~GLI 1185 (1460)
|+++|++|+|+|+| |+.| .+++|.| ||+|||++++|+|++||.+|++++ ++|.+++|+|+|+++++|||
T Consensus 797 S~~~P~~L~f~g~D~~G~~y~~~~~~i~K~g-DDLRQD~~v~Qli~lmn~il~~~~----~dL~l~~Y~Vip~s~~~GlI 871 (1091)
T 3hhm_A 797 SAKRPLWLNWENPDIMSELLFQNNEIIFKNG-DDLRQDMLTLQIIRIMENIWQNQG----LDLRMLPYGCLSIGDCVGLI 871 (1091)
T ss_dssp SSSCCEEEEECCCSTTSTTTSCCEEEEEEES-SCCHHHHHHHHHHHHHHHHHHTTT----CCCCCCCCCEEEEETTEEEE
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCEEEEECC-CCHHHHHHHHHHHHHHHHHHHHCC----CCCEEEEEEEEECCCCCCCE
T ss_conf 1058179999547888761134432799748-633188999999999999998579----98067622699846987643
Q ss_pred EECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 882898755887521013899887768885016787752015376899999998623-2348999999808955899999
Q 000498 1186 EWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENF-RPVLHYFFLERFLQPAYWFEKR 1264 (1460)
Q Consensus 1186 E~v~~t~sl~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~-~pvl~~~f~~~f~~~~~w~~~R 1264 (1460)
|||+|++|+++|+..... .+ . ..+ .+++++||.+.| ++..|+.+|
T Consensus 872 E~V~ns~Tl~~I~~~~~~-~~---~-----------------------------~~f~~~~L~~~f~~~~-~~~~~~~ar 917 (1091)
T 3hhm_A 872 EVVRNSHTIMQIQCKGGL-KG---A-----------------------------LQFNSHTLHQWLKDKN-KGEIYDAAI 917 (1091)
T ss_dssp ECCSSEEEHHHHHHSCTT-TC---T-----------------------------TCCCTTHHHHHHHTTS-CTTSHHHHH
T ss_pred EECCCCHHHHHHHHHHCC-CC---C-----------------------------CCCCCHHHHHHHHHCC-CHHHHHHHH
T ss_conf 453872509999986186-51---0-----------------------------0247467999998608-768999999
Q ss_pred HHHHHHHHCCCHHHHEECCCCCCCCEEEEECCCCEEEEEECCHHHCCCC--CCCCCCCCCCCCCHHHHHCCCC--CCCC-
Q ss_conf 9989732000023411403788997068834899199954210000146--7999988871013415502454--4431-
Q 000498 1265 LAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL--MLKTPERVPFRLTRDIIDGMGV--TGVE- 1339 (1460)
Q Consensus 1265 ~~ft~S~A~~SivgyilgLgDRH~~NILid~~tG~v~hIDfg~~f~~g~--~l~~pE~VPFRLT~niv~~mG~--~g~e- 1339 (1460)
.+|++|+|+|||+||||||||||++|||||+ ||+++|||||++|++++ ....||+||||||+||+++||+ .|+|
T Consensus 918 ~nF~~S~A~ysvv~YiLgigDRH~~NILid~-tG~v~HIDFG~~f~~~~~~~~~~~E~vPFrLT~~mv~vmg~G~~~~e~ 996 (1091)
T 3hhm_A 918 DLFTRSCAGYCVATFILGIGDRHNSNIMVKD-DGQLFHIDFGHFLDHKKKKFGYKRERVPFVLTQDFLIVISKGAQECTK 996 (1091)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCTTTEEEET-TSCEEECCCCCCSCC------------CCCCCHHHHHHSSCSSSCCSS
T ss_pred HHHHHHHHHHHHEEEEEEECCCCCCCEEEEC-CCCEEEEEEHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCCCC
T ss_conf 9999976424243788760688876469907-999898702545403876677776788843279999998257777655
Q ss_pred ----CHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf ----0128889998999710959999999997118875222581679854310232213799999200034145999999
Q 000498 1340 ----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALI 1415 (1460)
Q Consensus 1340 ----G~F~~~~~~t~~~Lr~~~~~l~~iL~~f~~DpL~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~ 1415 (1460)
|.|+.+|+.++.+||++++.|++++++|+++++.+|...+ .+.
T Consensus 997 s~~fg~Fr~~c~~a~~~LR~~~~~il~LlelM~~s~lp~~~~~~---------------------------------~i~ 1043 (1091)
T 3hhm_A 997 TREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQSFD---------------------------------DIA 1043 (1091)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHGGGSCCTTCSSHH---------------------------------HHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH---------------------------------HHH
T ss_conf 52077899999999999986567899999998069997657657---------------------------------999
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 998520699899876999999999999019
Q 000498 1416 RVKQKLDGYEGGEMRSVHGQVQQLIQDAID 1445 (1460)
Q Consensus 1416 ~v~~KL~g~~~~~~lsv~~qV~~LI~~Atd 1445 (1460)
.+++++.--.+. --...++..+|.+|.+
T Consensus 1044 ~lr~rf~l~lse--eeA~~~f~~~i~~s~~ 1071 (1091)
T 3hhm_A 1044 YIRKTLALDKTE--QEALEYFMKQMNDARH 1071 (1091)
T ss_dssp HHHHHSCCSSCH--HHHHHHHHHHHHHCCC
T ss_pred HHHHHHCCCCCH--HHHHHHHHHHHHHHHH
T ss_conf 999974899899--9999999999999985
No 7
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=1.00 E-value=1 Score=90.00 Aligned_cols=33 Identities=36% Similarity=0.626 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCC
Q ss_conf 876999999999999019022562073432579
Q 000498 1428 EMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1460 (1460)
Q Consensus 1428 ~~lsv~~qV~~LI~~Atd~~nL~~m~~gW~pwl 1460 (1460)
+.+||++||++||++|||++|||+||+||+||+
T Consensus 1 ~~lsv~~QV~~LI~~At~~~NL~~my~GW~p~w 33 (33)
T 1w1n_A 1 NELDVPEQVDKLIQQATSIERLCQHYIGWCPFW 33 (33)
T ss_dssp CCSCSTHHHHHHHHHHHHHHHHHTTSCSCCTTC
T ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
T ss_conf 998889999999999659899998710003679
No 8
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=27.53 Aligned_cols=65 Identities=14% Similarity=-0.002 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8999999999998059935999999999631289999886233558699999999859938999999999962
Q 000498 679 TMQHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISEN 751 (1460)
Q Consensus 679 ~~~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~AklLW~~Ge~~~AI~~Lk~l~~~ 751 (1460)
....|...+....+.|++..|...+.++...... +..+....+..+...|+...|+.+++.+...
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 368 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY--------NLDVYPLHLASLHESGEKNKLYLISNDLVDR 368 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC--------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 0999999999999846899999999999972955--------3799999999999827777999999999851
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=26.29 Aligned_cols=62 Identities=18% Similarity=0.079 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999999805993599999999963128999988623355869999999985993899999999996
Q 000498 681 QHLLESASTLRKGFRLSQAAAALHELKFLYTGPGDQCSTVYWLGRLEEAKLLRAQGQHEMAINLAKYISE 750 (1460)
Q Consensus 681 ~~wl~~a~laRkag~~~~A~~aL~~l~~l~~~~~~q~~~~~~~a~lE~AklLW~~Ge~~~AI~~Lk~l~~ 750 (1460)
..|...+.+....|++..|...+.++..+.+ .+..+....+.++..+|+...|+..++..+.
T Consensus 204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 265 (388)
T 1w3b_A 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSP--------NHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999985789999999999985296--------8789999999999986889999999999986
No 10
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=25.30 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 3469999976089889999999997300
Q 000498 408 LSSQIVTLEHEGNWSKALEYYELQVRSD 435 (1460)
Q Consensus 408 l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 435 (1460)
....+.-|.+.|++++|+..|+..++.+
T Consensus 203 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 230 (597)
T 2xpi_A 203 CYLRGQVYTNLSNFDRAKECYKEALMVD 230 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 9998899998399899999999999729
Done!