Query 000499
Match_columns 1460
No_of_seqs 146 out of 164
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 10:48:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07765 KIP1: KIP1-like prote 100.0 9.7E-39 2.1E-43 290.8 7.4 74 14-87 1-74 (74)
2 KOG4674 Uncharacterized conser 99.9 9.5E-14 2.1E-18 181.0 134.1 1131 229-1434 72-1366(1822)
3 KOG4674 Uncharacterized conser 99.9 4.7E-14 1E-18 183.8 124.3 1087 232-1423 386-1541(1822)
4 KOG0161 Myosin class II heavy 99.9 1.7E-12 3.6E-17 172.2 129.1 764 322-1146 909-1728(1930)
5 KOG0161 Myosin class II heavy 99.9 4.1E-12 8.8E-17 168.6 122.1 926 249-1245 882-1884(1930)
6 TIGR00606 rad50 rad50. This fa 99.7 2.2E-08 4.7E-13 133.5 106.0 282 588-887 472-764 (1311)
7 TIGR02168 SMC_prok_B chromosom 99.7 5.7E-09 1.2E-13 135.0 90.7 20 267-286 167-186 (1179)
8 TIGR02169 SMC_prok_A chromosom 99.7 2.9E-09 6.4E-14 138.1 83.9 15 960-974 1024-1038(1164)
9 TIGR02168 SMC_prok_B chromosom 99.7 2.2E-08 4.8E-13 129.6 90.5 54 921-974 998-1052(1179)
10 TIGR00606 rad50 rad50. This fa 99.7 8.2E-08 1.8E-12 128.2 109.7 353 416-791 416-818 (1311)
11 TIGR02169 SMC_prok_A chromosom 99.7 5.5E-08 1.2E-12 126.5 89.2 57 997-1053 954-1010(1164)
12 PRK02224 chromosome segregatio 99.6 1.4E-08 3E-13 129.9 69.7 176 382-571 270-445 (880)
13 PRK02224 chromosome segregatio 99.5 4.6E-08 1E-12 125.3 67.7 58 591-648 534-591 (880)
14 COG1196 Smc Chromosome segrega 99.5 4.3E-06 9.3E-11 111.0 89.9 52 315-366 233-284 (1163)
15 PF10174 Cast: RIM-binding pro 99.4 1.3E-06 2.8E-11 110.6 70.9 314 277-601 58-406 (775)
16 PRK03918 chromosome segregatio 99.4 7.3E-06 1.6E-10 105.2 74.0 19 255-273 155-173 (880)
17 COG1196 Smc Chromosome segrega 99.4 1.4E-05 3.1E-10 106.1 89.7 307 318-645 190-497 (1163)
18 PRK03918 chromosome segregatio 99.3 1.6E-05 3.5E-10 102.1 72.4 38 324-361 241-278 (880)
19 PF10174 Cast: RIM-binding pro 99.3 3.9E-05 8.4E-10 97.6 71.8 479 232-738 69-598 (775)
20 PF01576 Myosin_tail_1: Myosin 99.0 2.9E-11 6.3E-16 154.2 0.1 715 409-1203 8-734 (859)
21 PRK01156 chromosome segregatio 98.9 0.0012 2.7E-08 85.7 66.6 25 428-452 300-324 (895)
22 KOG0612 Rho-associated, coiled 98.8 0.0022 4.8E-08 83.4 64.7 186 259-460 469-663 (1317)
23 PF01576 Myosin_tail_1: Myosin 98.8 7E-10 1.5E-14 141.8 -0.2 424 417-863 326-771 (859)
24 PF12128 DUF3584: Protein of u 98.7 0.005 1.1E-07 82.9 70.0 217 497-724 470-707 (1201)
25 PF05701 WEMBL: Weak chloropla 98.7 0.0012 2.6E-08 81.6 50.5 148 536-683 286-434 (522)
26 KOG4643 Uncharacterized coiled 98.7 0.0007 1.5E-08 86.2 47.4 319 546-902 258-588 (1195)
27 KOG0996 Structural maintenance 98.7 0.0057 1.2E-07 79.5 67.7 113 731-850 915-1027(1293)
28 PRK01156 chromosome segregatio 98.7 0.0065 1.4E-07 79.2 73.9 8 208-215 137-144 (895)
29 KOG4643 Uncharacterized coiled 98.6 0.0041 8.8E-08 79.6 51.0 99 658-781 524-624 (1195)
30 KOG0996 Structural maintenance 98.6 0.0081 1.8E-07 78.2 72.1 164 231-394 289-464 (1293)
31 PF05483 SCP-1: Synaptonemal c 98.6 0.0056 1.2E-07 76.1 81.8 520 234-897 110-659 (786)
32 PF07888 CALCOCO1: Calcium bin 98.6 0.0017 3.8E-08 79.8 44.6 92 537-638 370-461 (546)
33 PF07888 CALCOCO1: Calcium bin 98.6 0.00054 1.2E-08 84.1 39.9 195 546-757 263-458 (546)
34 PF05701 WEMBL: Weak chloropla 98.6 0.0069 1.5E-07 75.1 54.5 253 433-716 211-495 (522)
35 KOG0976 Rho/Rac1-interacting s 98.6 0.0041 8.8E-08 77.8 46.9 378 402-790 117-508 (1265)
36 KOG0933 Structural maintenance 98.4 0.023 5E-07 73.3 60.8 140 703-842 795-934 (1174)
37 PF15070 GOLGA2L5: Putative go 98.4 0.009 1.9E-07 75.4 44.9 205 618-849 282-498 (617)
38 PF05557 MAD: Mitotic checkpoi 98.4 5.5E-07 1.2E-11 113.9 8.4 64 619-682 302-368 (722)
39 PRK04863 mukB cell division pr 98.3 0.055 1.2E-06 74.3 76.7 640 234-891 276-1098(1486)
40 PF05557 MAD: Mitotic checkpoi 98.3 2.3E-06 5E-11 108.4 11.3 176 537-726 349-534 (722)
41 PF00261 Tropomyosin: Tropomyo 98.2 0.00061 1.3E-08 76.2 26.0 196 275-491 18-213 (237)
42 KOG0250 DNA repair protein RAD 98.1 0.087 1.9E-06 69.1 56.6 147 322-468 317-464 (1074)
43 PF12128 DUF3584: Protein of u 98.1 0.12 2.6E-06 70.2 74.5 242 542-783 604-862 (1201)
44 KOG0612 Rho-associated, coiled 98.1 0.1 2.2E-06 68.9 56.7 58 692-749 708-768 (1317)
45 PF05622 HOOK: HOOK protein; 98.1 1.1E-06 2.4E-11 111.1 2.7 420 437-897 169-606 (713)
46 KOG0250 DNA repair protein RAD 98.1 0.12 2.6E-06 67.8 64.8 256 243-520 213-474 (1074)
47 PF00261 Tropomyosin: Tropomyo 98.0 0.0016 3.5E-08 72.8 25.3 197 229-432 28-224 (237)
48 KOG0977 Nuclear envelope prote 98.0 0.013 2.9E-07 72.4 34.8 322 263-629 54-384 (546)
49 PF05911 DUF869: Plant protein 98.0 0.13 2.8E-06 66.6 59.9 587 286-915 45-760 (769)
50 KOG0978 E3 ubiquitin ligase in 98.0 0.13 2.7E-06 65.7 63.7 181 678-882 265-445 (698)
51 PF09730 BicD: Microtubule-ass 98.0 0.097 2.1E-06 67.1 41.8 390 396-815 32-469 (717)
52 PF00038 Filament: Intermediat 98.0 0.011 2.4E-07 67.9 31.1 166 735-911 140-306 (312)
53 PF00038 Filament: Intermediat 97.9 0.0084 1.8E-07 68.9 29.7 286 537-838 3-300 (312)
54 COG0419 SbcC ATPase involved i 97.9 0.24 5.2E-06 65.4 71.7 29 962-990 827-861 (908)
55 PRK04778 septation ring format 97.8 0.2 4.4E-06 63.0 52.5 122 588-720 283-415 (569)
56 PRK04863 mukB cell division pr 97.8 0.41 8.9E-06 66.2 79.9 240 390-638 354-602 (1486)
57 KOG0971 Microtubule-associated 97.8 0.28 6.1E-06 63.1 47.0 66 537-609 489-554 (1243)
58 KOG0976 Rho/Rac1-interacting s 97.8 0.27 5.8E-06 62.5 56.7 230 235-487 83-335 (1265)
59 PF05622 HOOK: HOOK protein; 97.8 5.6E-06 1.2E-10 104.9 0.0 112 769-900 551-662 (713)
60 PRK04778 septation ring format 97.8 0.28 6.1E-06 61.8 45.3 188 415-606 60-275 (569)
61 KOG0971 Microtubule-associated 97.7 0.18 3.8E-06 64.9 37.3 31 1183-1213 1019-1049(1243)
62 KOG0978 E3 ubiquitin ligase in 97.7 0.36 7.8E-06 61.7 60.0 161 690-864 376-567 (698)
63 KOG4593 Mitotic checkpoint pro 97.6 0.43 9.2E-06 60.5 64.5 121 378-510 166-289 (716)
64 KOG0962 DNA repair protein RAD 97.6 0.71 1.5E-05 62.2 91.9 296 897-1218 780-1100(1294)
65 PF09787 Golgin_A5: Golgin sub 97.6 0.18 4E-06 62.6 35.2 122 405-529 274-397 (511)
66 KOG0963 Transcription factor/C 97.6 0.44 9.6E-06 59.8 37.5 153 414-584 184-362 (629)
67 PF05483 SCP-1: Synaptonemal c 97.6 0.51 1.1E-05 59.6 83.5 453 419-947 176-646 (786)
68 KOG0933 Structural maintenance 97.5 0.73 1.6E-05 60.4 76.3 349 682-1062 671-1020(1174)
69 KOG0980 Actin-binding protein 97.5 0.59 1.3E-05 60.5 37.9 24 666-689 684-707 (980)
70 PF09730 BicD: Microtubule-ass 97.5 0.68 1.5E-05 59.8 58.5 118 430-558 31-148 (717)
71 COG0419 SbcC ATPase involved i 97.5 0.82 1.8E-05 60.6 75.4 25 899-923 754-778 (908)
72 PHA02562 46 endonuclease subun 97.4 0.06 1.3E-06 66.5 28.3 139 302-451 215-355 (562)
73 KOG0977 Nuclear envelope prote 97.2 0.63 1.4E-05 58.3 33.1 343 537-915 41-390 (546)
74 PF04849 HAP1_N: HAP1 N-termin 97.2 0.056 1.2E-06 63.1 22.1 180 590-780 86-305 (306)
75 PHA02562 46 endonuclease subun 97.2 0.14 3.1E-06 63.2 27.3 106 230-339 174-280 (562)
76 KOG0964 Structural maintenance 97.0 2.2 4.7E-05 56.1 61.2 330 234-563 269-810 (1200)
77 PF05911 DUF869: Plant protein 97.0 2.3 5.1E-05 55.5 61.8 119 690-815 598-716 (769)
78 PF14662 CCDC155: Coiled-coil 97.0 0.097 2.1E-06 57.5 20.5 187 458-690 5-191 (193)
79 PF07111 HCR: Alpha helical co 96.9 2.3 5E-05 54.4 62.1 117 407-528 244-372 (739)
80 KOG4673 Transcription factor T 96.7 3.2 6.9E-05 52.9 56.1 50 424-473 578-631 (961)
81 PF14662 CCDC155: Coiled-coil 96.7 0.57 1.2E-05 51.8 23.4 165 588-769 9-190 (193)
82 PRK11637 AmiB activator; Provi 96.7 1.4 3E-05 53.7 29.3 63 404-466 176-238 (428)
83 KOG0995 Centromere-associated 96.6 3.3 7.1E-05 52.1 41.0 225 232-473 223-479 (581)
84 KOG0962 DNA repair protein RAD 96.6 5.3 0.00012 54.4 92.4 39 1107-1145 820-858 (1294)
85 KOG0946 ER-Golgi vesicle-tethe 96.6 2 4.4E-05 55.5 30.4 89 542-637 845-933 (970)
86 KOG0946 ER-Golgi vesicle-tethe 96.6 0.42 9.1E-06 61.2 24.3 88 420-514 679-776 (970)
87 PF05667 DUF812: Protein of un 96.5 4.6 9.9E-05 51.7 33.7 85 196-280 287-371 (594)
88 PF15070 GOLGA2L5: Putative go 96.4 5.3 0.00011 51.4 52.0 27 242-268 2-28 (617)
89 COG1579 Zn-ribbon protein, pos 96.3 0.75 1.6E-05 52.5 22.5 147 323-491 12-158 (239)
90 COG5185 HEC1 Protein involved 96.1 5.5 0.00012 49.1 37.2 283 398-734 295-583 (622)
91 KOG4593 Mitotic checkpoint pro 96.1 7.1 0.00015 50.2 64.1 247 753-1038 442-709 (716)
92 PF09789 DUF2353: Uncharacteri 96.1 2 4.4E-05 50.9 25.0 113 737-851 65-177 (319)
93 KOG0994 Extracellular matrix g 96.0 9.5 0.0002 51.3 44.5 117 441-565 1505-1632(1758)
94 PRK11637 AmiB activator; Provi 96.0 5.9 0.00013 48.4 30.7 47 315-361 83-129 (428)
95 KOG1003 Actin filament-coating 96.0 3.6 7.8E-05 45.8 26.0 196 291-507 2-197 (205)
96 PF06160 EzrA: Septation ring 95.9 7.7 0.00017 49.3 46.5 257 378-650 162-435 (560)
97 PF15619 Lebercilin: Ciliary p 95.9 2.6 5.7E-05 46.8 23.8 133 410-558 59-191 (194)
98 KOG0995 Centromere-associated 95.9 7.7 0.00017 49.0 41.2 100 601-717 425-525 (581)
99 PF09728 Taxilin: Myosin-like 95.7 6.2 0.00013 46.7 34.7 95 379-473 162-263 (309)
100 PF09728 Taxilin: Myosin-like 95.6 6.6 0.00014 46.5 36.1 22 709-730 286-307 (309)
101 PF13851 GAS: Growth-arrest sp 95.4 3.6 7.8E-05 45.9 22.6 68 654-721 97-169 (201)
102 PF12718 Tropomyosin_1: Tropom 95.4 1.7 3.7E-05 46.1 19.1 55 430-491 77-131 (143)
103 PF09726 Macoilin: Transmembra 95.3 3.6 7.8E-05 53.5 25.1 234 408-662 421-680 (697)
104 COG1579 Zn-ribbon protein, pos 95.3 2.5 5.4E-05 48.5 21.1 61 295-355 26-86 (239)
105 PF12718 Tropomyosin_1: Tropom 95.2 2.2 4.8E-05 45.2 19.4 60 304-363 4-63 (143)
106 PF09726 Macoilin: Transmembra 95.1 4.4 9.5E-05 52.8 25.3 55 474-528 459-513 (697)
107 PLN02939 transferase, transfer 95.1 6.6 0.00014 52.6 27.0 126 655-791 224-370 (977)
108 PF08614 ATG16: Autophagy prot 95.1 0.087 1.9E-06 57.6 8.8 117 716-832 67-183 (194)
109 COG4372 Uncharacterized protei 94.9 13 0.00027 45.2 28.4 180 342-532 95-274 (499)
110 PLN02939 transferase, transfer 94.8 5.7 0.00012 53.2 25.3 143 563-730 223-372 (977)
111 KOG0963 Transcription factor/C 94.8 17 0.00037 46.4 36.4 167 290-468 118-292 (629)
112 PRK11281 hypothetical protein; 94.7 26 0.00057 48.1 34.2 35 329-363 74-108 (1113)
113 TIGR02680 conserved hypothetic 94.6 25 0.00053 49.4 31.9 86 265-350 742-829 (1353)
114 KOG1029 Endocytic adaptor prot 94.6 21 0.00046 46.5 29.7 111 626-761 469-580 (1118)
115 PF09755 DUF2046: Uncharacteri 94.6 13 0.00029 44.1 31.7 173 240-430 23-203 (310)
116 KOG0999 Microtubule-associated 94.5 19 0.00041 45.5 69.2 398 347-821 6-456 (772)
117 PF04849 HAP1_N: HAP1 N-termin 94.5 5.3 0.00012 47.3 21.6 166 660-832 86-287 (306)
118 PF09789 DUF2353: Uncharacteri 94.4 15 0.00032 44.0 26.1 198 489-695 9-227 (319)
119 PF14915 CCDC144C: CCDC144C pr 94.4 14 0.0003 43.7 38.1 109 412-520 91-210 (305)
120 KOG1003 Actin filament-coating 94.3 11 0.00025 42.1 25.1 62 234-295 1-62 (205)
121 PF10473 CENP-F_leu_zip: Leuci 94.1 5.8 0.00012 42.3 19.1 27 418-444 37-63 (140)
122 PF15619 Lebercilin: Ciliary p 94.1 6.1 0.00013 44.0 20.2 110 566-675 68-182 (194)
123 PF13851 GAS: Growth-arrest sp 94.0 5.3 0.00011 44.6 19.5 121 661-788 52-173 (201)
124 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.5 6.7 0.00014 40.8 18.1 130 327-487 2-131 (132)
125 PF08317 Spc7: Spc7 kinetochor 93.2 20 0.00042 42.7 23.6 24 588-611 76-99 (325)
126 PF08614 ATG16: Autophagy prot 93.1 1.1 2.3E-05 49.3 12.2 95 402-509 99-193 (194)
127 COG1340 Uncharacterized archae 93.0 24 0.00052 41.8 30.0 218 609-849 21-242 (294)
128 PF06160 EzrA: Septation ring 92.9 35 0.00077 43.6 52.1 388 377-799 75-492 (560)
129 PF10473 CENP-F_leu_zip: Leuci 92.9 9.4 0.0002 40.8 18.2 78 387-464 13-90 (140)
130 KOG0018 Structural maintenance 92.6 52 0.0011 44.7 69.6 234 374-626 224-469 (1141)
131 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.6 11 0.00024 39.2 18.2 33 398-430 98-130 (132)
132 PRK09039 hypothetical protein; 92.4 8.8 0.00019 46.1 19.5 60 432-491 122-181 (343)
133 COG4372 Uncharacterized protei 92.4 33 0.00072 41.9 29.1 149 322-477 124-275 (499)
134 PF08317 Spc7: Spc7 kinetochor 92.3 23 0.00049 42.2 22.5 128 358-485 130-261 (325)
135 KOG0018 Structural maintenance 92.2 58 0.0013 44.3 68.6 162 241-413 157-339 (1141)
136 PF07111 HCR: Alpha helical co 92.1 49 0.0011 43.2 69.4 182 599-804 357-567 (739)
137 PF10267 Tmemb_cc2: Predicted 92.0 17 0.00037 44.6 21.3 85 233-327 215-318 (395)
138 PF15397 DUF4618: Domain of un 91.9 30 0.00065 40.4 23.8 146 460-611 5-155 (258)
139 PF00769 ERM: Ezrin/radixin/mo 91.8 6.8 0.00015 45.0 16.9 113 290-416 2-114 (246)
140 PF09755 DUF2046: Uncharacteri 91.7 36 0.00077 40.7 33.2 217 259-514 21-247 (310)
141 COG5185 HEC1 Protein involved 91.5 46 0.00099 41.6 34.3 35 760-794 546-580 (622)
142 PF09787 Golgin_A5: Golgin sub 91.1 53 0.0011 41.6 30.1 62 498-560 248-310 (511)
143 PF13514 AAA_27: AAA domain 90.9 82 0.0018 43.5 85.4 331 242-578 128-492 (1111)
144 PF05010 TACC: Transforming ac 90.8 33 0.00072 38.9 25.7 18 297-314 66-83 (207)
145 COG3883 Uncharacterized protei 90.4 34 0.00074 40.1 20.7 169 547-743 33-217 (265)
146 KOG4673 Transcription factor T 90.3 70 0.0015 41.7 63.2 340 339-731 406-761 (961)
147 COG1340 Uncharacterized archae 90.2 46 0.001 39.5 31.1 49 596-644 202-250 (294)
148 PRK09039 hypothetical protein; 89.2 49 0.0011 40.0 21.6 158 400-571 48-206 (343)
149 smart00787 Spc7 Spc7 kinetocho 89.1 57 0.0012 39.0 22.6 46 588-636 71-116 (312)
150 KOG1853 LIS1-interacting prote 88.9 53 0.0011 38.3 20.2 49 345-396 62-110 (333)
151 KOG4302 Microtubule-associated 88.5 95 0.0021 40.7 24.8 97 862-979 221-333 (660)
152 PF04156 IncA: IncA protein; 87.8 23 0.00051 38.4 16.4 27 336-362 82-108 (191)
153 PF15397 DUF4618: Domain of un 87.6 65 0.0014 37.8 28.7 109 404-515 5-114 (258)
154 KOG0804 Cytoplasmic Zn-finger 87.1 11 0.00025 46.4 14.6 121 741-877 325-445 (493)
155 PF14073 Cep57_CLD: Centrosome 86.9 56 0.0012 36.4 18.6 118 797-967 54-171 (178)
156 PF00769 ERM: Ezrin/radixin/mo 86.5 23 0.00049 40.8 16.1 107 353-459 9-115 (246)
157 PF12325 TMF_TATA_bd: TATA ele 86.3 15 0.00033 38.2 13.2 100 1028-1138 15-114 (120)
158 PF05667 DUF812: Protein of un 86.2 1.2E+02 0.0026 39.5 34.2 42 267-308 323-364 (594)
159 TIGR00634 recN DNA repair prot 86.2 1.1E+02 0.0024 39.1 23.3 46 429-474 269-314 (563)
160 KOG0982 Centrosomal protein Nu 86.1 1E+02 0.0022 38.5 28.4 157 420-583 251-427 (502)
161 PF04156 IncA: IncA protein; 86.1 16 0.00036 39.5 14.1 100 589-695 90-189 (191)
162 PF15254 CCDC14: Coiled-coil d 86.0 28 0.00061 45.6 17.7 151 1162-1331 380-565 (861)
163 TIGR03007 pepcterm_ChnLen poly 86.0 92 0.002 38.7 22.1 26 333-358 166-191 (498)
164 PF04111 APG6: Autophagy prote 85.8 13 0.00028 44.2 14.1 57 397-453 77-133 (314)
165 PF15066 CAGE1: Cancer-associa 85.3 1.1E+02 0.0025 38.4 25.0 105 409-514 366-471 (527)
166 KOG1029 Endocytic adaptor prot 85.0 1.5E+02 0.0032 39.5 35.2 63 452-514 442-504 (1118)
167 PF05010 TACC: Transforming ac 84.8 78 0.0017 36.0 28.2 145 343-514 56-200 (207)
168 PRK15422 septal ring assembly 84.7 6 0.00013 38.5 8.6 63 585-647 16-78 (79)
169 KOG1937 Uncharacterized conser 84.6 1.2E+02 0.0026 38.1 31.3 205 246-463 243-485 (521)
170 TIGR03185 DNA_S_dndD DNA sulfu 84.5 1.4E+02 0.0031 38.8 39.0 24 588-611 422-445 (650)
171 KOG0243 Kinesin-like protein [ 84.5 1.8E+02 0.0039 40.0 50.7 80 436-515 437-516 (1041)
172 PRK10929 putative mechanosensi 84.4 1.9E+02 0.0042 40.3 42.6 53 601-653 265-317 (1109)
173 TIGR03185 DNA_S_dndD DNA sulfu 84.3 1.4E+02 0.0031 38.8 35.5 45 261-305 205-249 (650)
174 TIGR00634 recN DNA repair prot 83.8 1.3E+02 0.0029 38.4 22.6 34 256-289 159-192 (563)
175 PF12777 MT: Microtubule-bindi 83.7 1.1E+02 0.0024 36.9 22.5 66 404-469 220-285 (344)
176 KOG4360 Uncharacterized coiled 83.5 23 0.0005 44.4 15.0 137 653-837 162-298 (596)
177 PF04012 PspA_IM30: PspA/IM30 83.0 84 0.0018 35.1 18.4 123 290-428 20-142 (221)
178 PF04111 APG6: Autophagy prote 82.9 15 0.00033 43.6 13.0 24 353-380 13-36 (314)
179 PF06008 Laminin_I: Laminin Do 82.8 98 0.0021 35.7 27.6 84 383-466 23-106 (264)
180 COG4477 EzrA Negative regulato 82.4 1.6E+02 0.0034 37.8 46.3 91 637-728 455-546 (570)
181 COG3074 Uncharacterized protei 81.4 9.3 0.0002 36.5 8.3 62 584-645 15-76 (79)
182 KOG0994 Extracellular matrix g 81.1 2.5E+02 0.0053 39.1 52.9 94 265-362 1201-1294(1758)
183 PF15294 Leu_zip: Leucine zipp 80.7 1.3E+02 0.0028 35.7 25.5 52 578-629 118-174 (278)
184 PF04012 PspA_IM30: PspA/IM30 80.4 1E+02 0.0022 34.4 20.0 120 240-368 26-145 (221)
185 PF10481 CENP-F_N: Cenp-F N-te 80.4 73 0.0016 37.6 16.6 146 496-683 32-188 (307)
186 KOG0804 Cytoplasmic Zn-finger 79.8 42 0.00092 41.7 15.2 83 709-791 347-429 (493)
187 smart00787 Spc7 Spc7 kinetocho 79.7 72 0.0016 38.2 17.0 147 721-884 142-288 (312)
188 PRK10698 phage shock protein P 78.8 1.3E+02 0.0027 34.4 22.0 119 234-361 21-139 (222)
189 PF10212 TTKRSYEDQ: Predicted 77.7 1.6E+02 0.0034 37.8 19.5 56 414-469 297-352 (518)
190 PF10212 TTKRSYEDQ: Predicted 77.6 2.2E+02 0.0047 36.5 22.0 30 309-338 304-333 (518)
191 KOG4302 Microtubule-associated 77.6 2.5E+02 0.0054 37.1 29.1 185 739-981 16-204 (660)
192 KOG2991 Splicing regulator [RN 77.4 1.6E+02 0.0034 34.8 26.9 22 317-338 146-167 (330)
193 KOG1899 LAR transmembrane tyro 77.2 45 0.00098 42.9 14.7 81 409-496 108-195 (861)
194 KOG2129 Uncharacterized conser 77.1 2E+02 0.0044 35.9 20.9 66 309-374 148-226 (552)
195 KOG2129 Uncharacterized conser 77.0 2E+02 0.0044 35.9 23.0 66 366-431 149-227 (552)
196 PF09738 DUF2051: Double stran 76.8 44 0.00096 39.8 14.1 149 588-753 78-242 (302)
197 PF11559 ADIP: Afadin- and alp 76.2 60 0.0013 34.3 13.7 94 409-512 56-149 (151)
198 PF10481 CENP-F_N: Cenp-F N-te 75.4 1.7E+02 0.0037 34.7 17.6 113 402-514 15-127 (307)
199 PF13166 AAA_13: AAA domain 75.4 2.6E+02 0.0057 36.4 24.2 36 378-413 364-399 (712)
200 COG1842 PspA Phage shock prote 74.7 1.7E+02 0.0036 33.8 19.9 104 338-441 27-135 (225)
201 PF06005 DUF904: Protein of un 74.3 15 0.00032 35.2 7.7 53 587-646 18-70 (72)
202 PF12325 TMF_TATA_bd: TATA ele 74.2 1E+02 0.0022 32.4 14.3 45 473-517 73-117 (120)
203 KOG0239 Kinesin (KAR3 subfamil 74.2 89 0.0019 41.1 16.9 35 820-855 286-320 (670)
204 PF14992 TMCO5: TMCO5 family 74.0 31 0.00068 40.7 11.7 41 411-451 10-50 (280)
205 PRK10929 putative mechanosensi 73.6 3.9E+02 0.0084 37.5 36.6 48 404-451 186-233 (1109)
206 KOG0239 Kinesin (KAR3 subfamil 73.3 1.3E+02 0.0029 39.6 18.2 46 428-473 222-267 (670)
207 PF14915 CCDC144C: CCDC144C pr 73.2 2.1E+02 0.0047 34.3 37.0 91 481-571 136-226 (305)
208 PF10168 Nup88: Nuclear pore c 72.8 2.2E+02 0.0049 37.9 20.1 54 418-471 564-617 (717)
209 TIGR01005 eps_transp_fam exopo 72.4 3.3E+02 0.0071 36.1 22.0 24 336-359 202-225 (754)
210 PF10146 zf-C4H2: Zinc finger- 71.5 80 0.0017 36.4 14.0 104 496-613 4-108 (230)
211 KOG4438 Centromere-associated 70.5 2.9E+02 0.0063 34.7 38.8 137 308-444 139-287 (446)
212 PF15450 DUF4631: Domain of un 70.1 3.2E+02 0.007 35.1 53.3 37 951-987 448-484 (531)
213 PF06818 Fez1: Fez1; InterPro 69.6 2.1E+02 0.0045 32.7 18.0 173 595-767 11-200 (202)
214 COG3883 Uncharacterized protei 69.2 2.5E+02 0.0053 33.4 22.3 24 661-684 194-217 (265)
215 KOG0999 Microtubule-associated 68.9 3.5E+02 0.0076 35.0 61.0 642 657-1434 8-731 (772)
216 PRK11281 hypothetical protein; 68.8 4.9E+02 0.011 36.6 40.5 53 601-653 285-337 (1113)
217 PF04912 Dynamitin: Dynamitin 68.7 2.9E+02 0.0062 33.9 23.2 300 104-481 15-388 (388)
218 PF09304 Cortex-I_coil: Cortex 68.6 48 0.001 34.2 10.1 75 761-836 19-94 (107)
219 TIGR03017 EpsF chain length de 68.6 2.9E+02 0.0062 33.9 19.4 20 353-372 258-277 (444)
220 TIGR02680 conserved hypothetic 67.5 5.5E+02 0.012 36.8 33.2 26 231-256 736-761 (1353)
221 PRK10869 recombination and rep 66.5 3.8E+02 0.0083 34.6 23.9 26 448-473 283-308 (553)
222 KOG0982 Centrosomal protein Nu 66.5 3.5E+02 0.0076 34.1 29.4 40 268-307 218-257 (502)
223 PF07227 DUF1423: Protein of u 66.1 96 0.0021 38.9 13.9 50 309-358 336-387 (446)
224 PF15254 CCDC14: Coiled-coil d 66.1 4.6E+02 0.0099 35.3 21.8 31 551-581 514-544 (861)
225 PF15066 CAGE1: Cancer-associa 66.0 3.7E+02 0.008 34.2 26.8 73 383-455 389-468 (527)
226 PRK10698 phage shock protein P 65.7 2.5E+02 0.0054 32.1 23.5 46 368-413 90-135 (222)
227 TIGR02449 conserved hypothetic 65.6 18 0.00038 34.3 6.0 61 1370-1437 5-65 (65)
228 TIGR01843 type_I_hlyD type I s 65.0 3E+02 0.0066 32.9 21.5 20 234-253 85-104 (423)
229 PRK15422 septal ring assembly 64.9 78 0.0017 31.2 10.3 18 375-392 2-19 (79)
230 PRK10246 exonuclease subunit S 63.8 5.7E+02 0.012 35.6 73.7 17 974-990 979-995 (1047)
231 KOG1962 B-cell receptor-associ 63.8 33 0.00072 39.1 8.9 74 751-838 137-210 (216)
232 PF07200 Mod_r: Modifier of ru 63.2 2E+02 0.0043 30.3 14.1 132 709-849 7-138 (150)
233 COG4942 Membrane-bound metallo 63.1 4E+02 0.0086 33.6 29.5 37 321-357 73-109 (420)
234 PF11559 ADIP: Afadin- and alp 62.7 2.1E+02 0.0046 30.3 17.2 97 428-555 54-150 (151)
235 PF06785 UPF0242: Uncharacteri 62.4 3.7E+02 0.008 33.0 17.3 53 439-491 112-164 (401)
236 PF05266 DUF724: Protein of un 62.4 1.3E+02 0.0028 33.8 13.1 55 378-432 132-186 (190)
237 PF06005 DUF904: Protein of un 62.4 69 0.0015 30.8 9.5 7 379-385 6-12 (72)
238 PF10498 IFT57: Intra-flagella 62.0 2.3E+02 0.0049 34.8 16.0 48 422-469 216-263 (359)
239 PF10226 DUF2216: Uncharacteri 62.0 1.2E+02 0.0026 34.3 12.4 91 571-680 53-145 (195)
240 KOG4360 Uncharacterized coiled 61.6 3.2E+02 0.0069 35.1 17.0 127 236-390 172-302 (596)
241 KOG0964 Structural maintenance 61.1 6.1E+02 0.013 35.1 72.8 85 743-827 670-754 (1200)
242 KOG4460 Nuclear pore complex, 60.9 4.9E+02 0.011 33.9 18.5 137 319-469 600-738 (741)
243 COG2433 Uncharacterized conser 60.8 2E+02 0.0044 37.4 15.6 23 311-333 349-371 (652)
244 PRK10869 recombination and rep 60.4 4.8E+02 0.01 33.7 23.4 64 428-491 301-364 (553)
245 PF09738 DUF2051: Double stran 59.5 72 0.0016 38.2 11.1 54 777-830 82-135 (302)
246 PF07058 Myosin_HC-like: Myosi 59.1 2.5E+02 0.0054 33.9 14.9 117 658-792 1-142 (351)
247 KOG1899 LAR transmembrane tyro 58.6 1.2E+02 0.0027 39.3 13.1 135 734-878 115-249 (861)
248 PF10498 IFT57: Intra-flagella 58.4 3.3E+02 0.0072 33.5 16.6 44 417-460 278-321 (359)
249 KOG3850 Predicted membrane pro 56.4 4.9E+02 0.011 32.5 22.6 91 234-334 264-373 (455)
250 TIGR03007 pepcterm_ChnLen poly 56.3 4.9E+02 0.011 32.5 22.0 13 446-458 354-366 (498)
251 PF08581 Tup_N: Tup N-terminal 55.7 1.3E+02 0.0028 29.6 10.2 64 396-459 2-76 (79)
252 TIGR01005 eps_transp_fam exopo 55.5 6.3E+02 0.014 33.5 24.4 26 293-318 237-262 (754)
253 PF10168 Nup88: Nuclear pore c 54.9 6.7E+02 0.015 33.7 21.4 45 317-361 575-619 (717)
254 PF14988 DUF4515: Domain of un 54.5 3.8E+02 0.0081 30.6 22.5 123 615-751 47-184 (206)
255 KOG0240 Kinesin (SMY1 subfamil 54.4 6.2E+02 0.013 33.1 24.2 79 486-564 418-496 (607)
256 PF14197 Cep57_CLD_2: Centroso 54.3 75 0.0016 30.3 8.2 58 709-766 5-62 (69)
257 PRK10884 SH3 domain-containing 53.6 1.7E+02 0.0036 33.3 12.2 29 226-254 89-117 (206)
258 COG4942 Membrane-bound metallo 53.2 5.7E+02 0.012 32.3 27.1 71 399-469 39-109 (420)
259 PF09304 Cortex-I_coil: Cortex 52.9 2.6E+02 0.0055 29.2 12.1 63 714-776 14-76 (107)
260 PF10186 Atg14: UV radiation r 52.7 4.1E+02 0.0088 30.4 18.6 68 239-306 22-97 (302)
261 PF14992 TMCO5: TMCO5 family 52.1 3.5E+02 0.0076 32.4 14.7 27 461-487 116-142 (280)
262 COG4026 Uncharacterized protei 52.0 1.1E+02 0.0025 35.2 10.4 82 703-791 129-210 (290)
263 PRK10884 SH3 domain-containing 51.6 1.6E+02 0.0035 33.4 11.7 17 400-416 95-111 (206)
264 PF15369 KIAA1328: Uncharacter 51.5 1.6E+02 0.0034 35.8 11.9 78 349-450 8-85 (328)
265 PF11932 DUF3450: Protein of u 51.3 4.3E+02 0.0094 30.4 16.4 67 407-473 37-103 (251)
266 PF04645 DUF603: Protein of un 50.8 2.5E+02 0.0053 31.5 12.3 91 288-380 70-170 (181)
267 PF09744 Jnk-SapK_ap_N: JNK_SA 50.4 3.1E+02 0.0066 30.2 13.1 83 232-331 45-127 (158)
268 PF07106 TBPIP: Tat binding pr 50.2 1.5E+02 0.0032 32.0 10.9 95 710-823 73-168 (169)
269 PF09766 FimP: Fms-interacting 50.1 1.1E+02 0.0024 37.2 10.8 142 1307-1448 3-164 (355)
270 PF10146 zf-C4H2: Zinc finger- 49.9 3.1E+02 0.0067 31.8 13.7 72 293-364 32-103 (230)
271 KOG0243 Kinesin-like protein [ 49.5 9.3E+02 0.02 33.7 52.0 344 619-973 536-906 (1041)
272 PF05266 DUF724: Protein of un 48.8 2.7E+02 0.0058 31.4 12.7 86 435-520 98-183 (190)
273 PF13514 AAA_27: AAA domain 48.5 9.6E+02 0.021 33.6 83.4 95 753-847 738-834 (1111)
274 PF04582 Reo_sigmaC: Reovirus 47.9 34 0.00073 41.2 6.0 129 332-474 25-153 (326)
275 PF08826 DMPK_coil: DMPK coile 47.6 1E+02 0.0022 29.1 7.7 43 445-487 16-58 (61)
276 PF14073 Cep57_CLD: Centrosome 47.2 4.7E+02 0.01 29.5 20.2 127 315-473 5-132 (178)
277 PF10186 Atg14: UV radiation r 47.1 4.9E+02 0.011 29.8 18.4 11 651-661 224-234 (302)
278 COG4026 Uncharacterized protei 46.4 1E+02 0.0022 35.6 8.9 8 666-673 130-137 (290)
279 PF10267 Tmemb_cc2: Predicted 45.4 3.1E+02 0.0068 34.2 13.7 46 501-549 242-287 (395)
280 PF07889 DUF1664: Protein of u 44.8 3.5E+02 0.0077 28.8 12.1 76 396-474 48-123 (126)
281 TIGR01010 BexC_CtrB_KpsE polys 44.8 3.7E+02 0.0081 32.3 14.1 133 768-903 173-307 (362)
282 PF15294 Leu_zip: Leucine zipp 44.7 6.3E+02 0.014 30.3 20.5 74 697-777 127-209 (278)
283 PF06548 Kinesin-related: Kine 44.5 7.9E+02 0.017 31.4 26.9 106 742-849 342-469 (488)
284 PF14988 DUF4515: Domain of un 44.1 5.4E+02 0.012 29.4 22.1 21 435-455 49-69 (206)
285 PF12795 MscS_porin: Mechanose 43.4 5.5E+02 0.012 29.3 21.3 50 311-364 18-67 (240)
286 PF00170 bZIP_1: bZIP transcri 43.3 35 0.00076 31.3 4.2 40 1391-1430 24-63 (64)
287 TIGR02338 gimC_beta prefoldin, 43.2 1.9E+02 0.0041 29.4 9.7 102 1101-1222 5-106 (110)
288 PF13166 AAA_13: AAA domain 43.1 8.9E+02 0.019 31.6 24.4 35 425-459 437-471 (712)
289 COG1842 PspA Phage shock prote 42.9 5.9E+02 0.013 29.5 20.4 112 232-373 33-144 (225)
290 KOG1962 B-cell receptor-associ 42.7 2.8E+02 0.006 32.1 11.8 50 400-449 160-209 (216)
291 KOG1853 LIS1-interacting prote 42.3 6.6E+02 0.014 29.9 20.3 71 424-501 82-159 (333)
292 KOG4677 Golgi integral membran 42.2 8.5E+02 0.018 31.1 35.4 105 404-513 308-418 (554)
293 KOG0993 Rab5 GTPase effector R 42.0 8.2E+02 0.018 30.9 37.0 87 658-749 435-522 (542)
294 KOG2077 JNK/SAPK-associated pr 41.9 81 0.0018 40.4 8.0 54 732-785 331-384 (832)
295 PF08647 BRE1: BRE1 E3 ubiquit 39.9 2.4E+02 0.0051 28.3 9.6 59 592-650 1-59 (96)
296 PF04048 Sec8_exocyst: Sec8 ex 39.8 4.4E+02 0.0096 28.0 12.2 66 315-384 66-131 (142)
297 PF10046 BLOC1_2: Biogenesis o 39.7 4.1E+02 0.0088 26.8 11.3 35 374-408 63-97 (99)
298 PRK03947 prefoldin subunit alp 39.2 4.8E+02 0.01 27.3 13.0 42 338-383 9-50 (140)
299 PRK11519 tyrosine kinase; Prov 38.8 7E+02 0.015 33.2 16.3 77 756-832 258-336 (719)
300 PF04880 NUDE_C: NUDE protein, 38.5 42 0.0009 37.0 4.5 46 589-638 2-47 (166)
301 PF07058 Myosin_HC-like: Myosi 38.2 1.8E+02 0.0039 35.1 9.6 80 554-633 2-133 (351)
302 PRK09841 cryptic autophosphory 37.9 7.3E+02 0.016 33.1 16.3 83 755-837 257-341 (726)
303 PF11570 E2R135: Coiled-coil r 37.5 5.6E+02 0.012 27.7 13.4 115 233-349 11-133 (136)
304 PF13870 DUF4201: Domain of un 37.2 5.8E+02 0.013 27.8 20.7 19 496-514 56-74 (177)
305 TIGR03017 EpsF chain length de 36.8 8.8E+02 0.019 29.8 20.9 28 332-359 175-202 (444)
306 PF03962 Mnd1: Mnd1 family; I 36.6 5.6E+02 0.012 28.7 12.9 76 319-399 81-157 (188)
307 PF12795 MscS_porin: Mechanose 36.3 7.1E+02 0.015 28.5 23.8 187 251-453 14-212 (240)
308 PRK09841 cryptic autophosphory 36.1 8.5E+02 0.019 32.4 16.5 9 239-247 211-219 (726)
309 KOG4807 F-actin binding protei 35.7 9.9E+02 0.021 30.0 23.5 221 408-661 294-572 (593)
310 PF15035 Rootletin: Ciliary ro 35.3 6.1E+02 0.013 28.4 12.8 74 455-528 61-134 (182)
311 PRK09343 prefoldin subunit bet 35.3 3.1E+02 0.0068 28.5 10.0 108 1096-1223 4-111 (121)
312 KOG0980 Actin-binding protein 35.0 1.4E+03 0.03 31.6 34.4 180 288-481 335-514 (980)
313 KOG4809 Rab6 GTPase-interactin 34.3 1.2E+03 0.026 30.6 34.0 262 447-751 338-619 (654)
314 PF03999 MAP65_ASE1: Microtubu 34.0 51 0.0011 42.6 5.1 108 860-981 200-309 (619)
315 PF14197 Cep57_CLD_2: Centroso 33.9 3.5E+02 0.0075 26.0 9.2 63 994-1056 5-67 (69)
316 PF06818 Fez1: Fez1; InterPro 33.9 7.8E+02 0.017 28.3 20.9 124 404-527 30-162 (202)
317 PF04582 Reo_sigmaC: Reovirus 33.9 57 0.0012 39.4 5.0 120 710-829 29-155 (326)
318 PRK11519 tyrosine kinase; Prov 33.6 1.2E+03 0.027 31.0 17.3 10 239-248 211-220 (719)
319 COG2433 Uncharacterized conser 33.2 5.9E+02 0.013 33.5 13.6 48 402-449 419-466 (652)
320 PF04102 SlyX: SlyX; InterPro 32.6 2E+02 0.0044 27.2 7.5 47 421-467 6-52 (69)
321 PF13870 DUF4201: Domain of un 32.5 6.9E+02 0.015 27.2 21.2 109 407-515 51-164 (177)
322 PF04645 DUF603: Protein of un 32.4 4.7E+02 0.01 29.4 11.0 81 333-413 59-153 (181)
323 cd00632 Prefoldin_beta Prefold 32.4 1.8E+02 0.0038 29.3 7.5 72 1337-1417 30-101 (105)
324 KOG4001 Axonemal dynein light 32.2 2.3E+02 0.005 32.4 8.9 80 1234-1319 173-252 (259)
325 PF05529 Bap31: B-cell recepto 32.1 2.5E+02 0.0054 31.0 9.2 28 318-345 115-142 (192)
326 smart00338 BRLZ basic region l 32.0 60 0.0013 29.8 3.8 40 1391-1430 24-63 (65)
327 PLN03188 kinesin-12 family pro 31.6 1.8E+03 0.039 31.8 28.7 288 519-847 886-1237(1320)
328 PF05384 DegS: Sensor protein 31.5 7.5E+02 0.016 27.4 22.1 107 241-368 3-110 (159)
329 PF09766 FimP: Fms-interacting 31.3 1.1E+03 0.023 29.0 16.1 40 404-443 11-50 (355)
330 PRK04406 hypothetical protein; 31.3 2.5E+02 0.0054 27.3 7.9 46 422-467 14-59 (75)
331 PF10234 Cluap1: Clusterin-ass 30.8 7.1E+02 0.015 29.7 12.9 89 298-386 167-255 (267)
332 PF10211 Ax_dynein_light: Axon 30.5 8.2E+02 0.018 27.5 15.7 18 994-1011 84-101 (189)
333 PF04102 SlyX: SlyX; InterPro 30.0 1.3E+02 0.0028 28.5 5.7 37 377-413 4-40 (69)
334 PF04880 NUDE_C: NUDE protein, 30.0 59 0.0013 35.9 4.0 46 746-795 2-47 (166)
335 KOG3850 Predicted membrane pro 29.9 7.7E+02 0.017 30.9 13.2 24 340-363 315-338 (455)
336 PF04871 Uso1_p115_C: Uso1 / p 29.7 7.2E+02 0.016 26.6 12.0 58 589-652 57-114 (136)
337 KOG4603 TBP-1 interacting prot 29.7 1.9E+02 0.0041 32.4 7.5 59 536-606 77-135 (201)
338 KOG0288 WD40 repeat protein Ti 29.6 1.3E+03 0.027 29.4 16.3 81 281-361 8-88 (459)
339 PF15035 Rootletin: Ciliary ro 29.5 8.5E+02 0.018 27.4 16.4 68 400-467 62-129 (182)
340 TIGR02977 phageshock_pspA phag 29.3 8.8E+02 0.019 27.5 20.4 177 267-456 33-217 (219)
341 PF03962 Mnd1: Mnd1 family; I 28.3 7E+02 0.015 28.0 11.9 101 694-799 61-162 (188)
342 PF06008 Laminin_I: Laminin Do 26.6 1.1E+03 0.023 27.5 30.2 34 481-514 208-241 (264)
343 PF15233 SYCE1: Synaptonemal c 26.5 8.6E+02 0.019 26.4 15.4 124 589-744 8-133 (134)
344 COG3074 Uncharacterized protei 26.4 6.3E+02 0.014 24.8 10.0 62 423-491 8-69 (79)
345 KOG1128 Uncharacterized conser 26.4 1.3E+02 0.0027 39.9 6.4 63 11-96 149-217 (777)
346 PRK00295 hypothetical protein; 26.2 2.3E+02 0.005 27.0 6.6 37 377-413 5-41 (68)
347 PF02403 Seryl_tRNA_N: Seryl-t 26.0 3.5E+02 0.0076 27.0 8.3 74 380-453 25-101 (108)
348 KOG4657 Uncharacterized conser 26.0 1.1E+03 0.025 27.7 19.1 48 402-449 90-137 (246)
349 KOG0249 LAR-interacting protei 25.9 1.8E+03 0.039 30.0 22.7 235 217-487 15-256 (916)
350 KOG4809 Rab6 GTPase-interactin 25.8 1.6E+03 0.035 29.5 33.8 124 554-692 333-456 (654)
351 TIGR01010 BexC_CtrB_KpsE polys 25.8 6.6E+02 0.014 30.2 12.1 84 705-788 173-258 (362)
352 PF12329 TMF_DNA_bd: TATA elem 25.4 1.6E+02 0.0035 28.4 5.5 64 1371-1434 11-74 (74)
353 PF08055 Trp_leader1: Tryptoph 25.3 26 0.00056 25.3 0.2 9 13-21 7-15 (18)
354 PF04728 LPP: Lipoprotein leuc 25.2 4.7E+02 0.01 24.6 8.1 37 425-461 16-52 (56)
355 PRK02793 phi X174 lysis protei 25.2 2.4E+02 0.0051 27.2 6.6 48 377-424 8-55 (72)
356 PRK15178 Vi polysaccharide exp 24.4 1.6E+03 0.034 28.7 18.7 76 316-396 225-305 (434)
357 PF02994 Transposase_22: L1 tr 24.3 1.8E+02 0.0039 35.6 7.1 48 422-469 140-187 (370)
358 PF06705 SF-assemblin: SF-asse 24.2 1.1E+03 0.025 27.0 31.6 88 499-601 124-211 (247)
359 PF03999 MAP65_ASE1: Microtubu 24.1 2.7E+02 0.0058 36.3 8.9 193 808-1016 201-410 (619)
360 PRK02119 hypothetical protein; 24.1 2.5E+02 0.0055 27.1 6.6 37 377-413 9-45 (73)
361 KOG4403 Cell surface glycoprot 23.9 9.6E+02 0.021 30.5 12.7 64 655-720 257-320 (575)
362 cd07597 BAR_SNX8 The Bin/Amphi 23.7 2.2E+02 0.0048 32.9 7.3 82 8-100 72-154 (246)
363 COG5509 Uncharacterized small 23.4 67 0.0015 30.2 2.5 26 1395-1420 27-52 (65)
364 PF06632 XRCC4: DNA double-str 23.1 4.8E+02 0.01 32.0 10.2 83 1098-1193 136-218 (342)
365 PRK00736 hypothetical protein; 23.1 2.8E+02 0.0061 26.4 6.6 48 377-424 5-52 (68)
366 PRK04406 hypothetical protein; 22.8 2.7E+02 0.0059 27.0 6.6 37 377-413 11-47 (75)
367 PF05377 FlaC_arch: Flagella a 22.8 1.8E+02 0.0038 27.1 5.0 44 379-429 2-45 (55)
368 TIGR02338 gimC_beta prefoldin, 22.8 6.2E+02 0.013 25.8 9.4 97 741-841 7-108 (110)
369 KOG0979 Structural maintenance 22.5 2.3E+03 0.05 30.1 57.3 137 315-455 196-333 (1072)
370 PRK00295 hypothetical protein; 22.4 4.4E+02 0.0095 25.1 7.7 44 424-467 10-53 (68)
371 KOG0288 WD40 repeat protein Ti 22.4 1.7E+03 0.037 28.4 15.4 74 229-302 12-85 (459)
372 PRK04325 hypothetical protein; 22.1 2.9E+02 0.0064 26.7 6.6 36 377-412 9-44 (74)
373 TIGR01000 bacteriocin_acc bact 21.9 1.6E+03 0.035 28.0 22.9 29 248-276 94-122 (457)
374 PF07106 TBPIP: Tat binding pr 21.7 8.8E+02 0.019 26.2 10.9 23 866-888 144-166 (169)
375 PRK00846 hypothetical protein; 21.6 3.1E+02 0.0067 27.1 6.6 48 377-424 13-60 (77)
376 PF08172 CASP_C: CASP C termin 21.4 8.9E+02 0.019 28.5 11.5 34 423-456 83-116 (248)
377 PF12761 End3: Actin cytoskele 21.3 3.8E+02 0.0083 30.6 8.2 89 323-424 105-193 (195)
378 PRK04325 hypothetical protein; 21.3 4.3E+02 0.0093 25.6 7.5 42 426-467 16-57 (74)
379 PF05529 Bap31: B-cell recepto 20.7 5.8E+02 0.013 28.1 9.5 34 331-364 157-190 (192)
380 PF15290 Syntaphilin: Golgi-lo 20.6 5.6E+02 0.012 30.8 9.6 35 455-489 69-103 (305)
381 PF04871 Uso1_p115_C: Uso1 / p 20.6 1.1E+03 0.023 25.4 12.7 61 411-471 40-101 (136)
382 PF06698 DUF1192: Protein of u 20.5 84 0.0018 29.4 2.5 29 1394-1422 22-50 (59)
383 PF13747 DUF4164: Domain of un 20.3 8.8E+02 0.019 24.3 10.8 40 443-482 35-74 (89)
384 COG1256 FlgK Flagellar hook-as 20.2 1E+03 0.022 31.2 12.6 125 679-846 86-212 (552)
385 PRK02119 hypothetical protein; 20.2 5E+02 0.011 25.1 7.7 40 428-467 18-57 (73)
No 1
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=100.00 E-value=9.7e-39 Score=290.78 Aligned_cols=74 Identities=85% Similarity=1.444 Sum_probs=73.6
Q ss_pred ccccccCCCCCCCchHHhhHhhHHHHHHHHHHHhhhccchHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHhh
Q 000499 14 SWWWDSHISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYD 87 (1460)
Q Consensus 14 swww~sh~~~~~s~wl~~~l~dm~~~vk~~l~li~ed~dsfakrAemyykkRpeLi~~vee~yr~yr~LAeryd 87 (1460)
||||||||+|++||||+.||+|||.|||+||++|++||||||+||||||+|||+||++|+||||+||+||||||
T Consensus 1 swww~sHi~~~~skWL~~~l~dmd~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAerYD 74 (74)
T PF07765_consen 1 SWWWDSHISPKQSKWLQENLSDMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAERYD 74 (74)
T ss_pred ChhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998
No 2
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.94 E-value=9.5e-14 Score=181.04 Aligned_cols=1131 Identities=21% Similarity=0.212 Sum_probs=568.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHH
Q 000499 229 SERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETE 308 (1460)
Q Consensus 229 sER~~kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~E 308 (1460)
+.-+..+..|+..|...+..+.+++..........-.-.+.|=..-+..|+.-..|- ....-.++.+..+..+
T Consensus 72 ~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~-------~~le~~~~ele~l~~~ 144 (1822)
T KOG4674|consen 72 SRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLM-------ELLERQKAELEALESE 144 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 334567777888888888777777766655555444444444333333332222222 2222223333333333
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHh
Q 000499 309 REANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRM----ISALED 384 (1460)
Q Consensus 309 kea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~----IS~LE~ 384 (1460)
-..-..|.++.-.+++.++..+...+.+.-.+.-+-.+.+.+...|-.+..-+..+--+..-.|.---.. ++.|++
T Consensus 145 n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~ 224 (1822)
T KOG4674|consen 145 NKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEE 224 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3344446666667777787777776666655655666667777776666666655444443333322223 677777
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHH---HHHHH-HHHHHHHHHHHHHHHH
Q 000499 385 KLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEA-------LALQYQQCL---EAISI-LEHKLARAEEEAQRLH 453 (1460)
Q Consensus 385 ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekea-------l~l~~qq~~---~kI~~-LE~els~sQEEv~RL~ 453 (1460)
++..+..+...+.....-+......|.+.|..+....-. ....|..-. .+|.. +....+....+++-|.
T Consensus 225 ~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~ 304 (1822)
T KOG4674|consen 225 KLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQ 304 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666665444444444444443322222221 222222111 11111 1222223344444455
Q ss_pred HHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-----------------
Q 000499 454 SELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEER----------------- 516 (1460)
Q Consensus 454 ~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~----------------- 516 (1460)
..|......|.+++.+|-... +.+..--+++.+......++|++|...+.+-.
T Consensus 305 ~~i~~~~klled~~~~~~e~~----------d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~s~~~a 374 (1822)
T KOG4674|consen 305 RAIEELEKLLEDASERNKENT----------DQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMVSEKAA 374 (1822)
T ss_pred HHHHHHHHHHHHHHHhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchhhhHHH
Confidence 666666666666666543221 11222222222333333345555555544431
Q ss_pred --HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchH----hH---HHHHHHHHHHhccCcccccccHH
Q 000499 517 --LRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQ----SL---QEEVEKVKEENKGLNELNLSSAE 587 (1460)
Q Consensus 517 --~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~----~L---~eev~~l~EEn~~L~e~n~SS~~ 587 (1460)
.+++-....|..+-.-+...|+++..+..+++.+.-.|+..-..-. -| -.++.+.++.+..+++..-.+.-
T Consensus 375 ~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q 454 (1822)
T KOG4674|consen 375 LASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQ 454 (1822)
T ss_pred HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333334444445555556688888888888877666554322111 11 13333444444444444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccch-----------h
Q 000499 588 SIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENF-----------G 656 (1460)
Q Consensus 588 sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~-----------~ 656 (1460)
-|.+++.++..|+-....+..|+-.-.-.-..|++.+.++-.+++.+...+-....+.+ +.+++- =
T Consensus 455 ~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~~---~~~es~S~~iIse~Lv~F 531 (1822)
T KOG4674|consen 455 KIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVSSDS---TENESDSEEIISERLVEF 531 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccc---cccCccHHHHHHHHHHHh
Confidence 68888888888888887777777766666677777777777777777776655555443 222221 2
Q ss_pred hhHHHHHHHhhhhHHHHHHhHHHHHHHHHH--------HHH-HHHHHHHHHHHhhhhhhhhHhhh-------hHHHH---
Q 000499 657 LSVKELQDENSKLKEVYERDRCEKVALLEK--------LEI-MEKLLEKNAVLENSLSDLNVELE-------GVRDK--- 717 (1460)
Q Consensus 657 ~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~k--------Lq~-mekLlEkns~LE~SLSdan~ELe-------gLReK--- 717 (1460)
..|.+||+.|..|...+..+.+...+---. ++. ..++.++.+-|++.+-....-++ -+|..
T Consensus 532 ~nI~eLqekN~eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~ 611 (1822)
T KOG4674|consen 532 SNINELQEKNVELLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAE 611 (1822)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 457899999999998777766544332211 111 33445555555544444333222 22222
Q ss_pred --------------------------HHHHHHHHHHHH-----------HhhhhhhhhHHHHHhhhhHHHHHHHhhhhhh
Q 000499 718 --------------------------VKALEEVCQNLL-----------AEKSTLVAEKNSLFSQLQDVNENLKKLSDEN 760 (1460)
Q Consensus 718 --------------------------~K~LEesc~sL~-----------~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekn 760 (1460)
+..|+.-..+++ .+...|..|..++=++|....-....-.+++
T Consensus 612 ~e~~~~~k~nss~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekl 691 (1822)
T KOG4674|consen 612 LEDSHQLKPNSSALDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKL 691 (1822)
T ss_pred ccccccCCCCchhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 122222222222 2222244444444455555555555555566
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHH
Q 000499 761 NFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKEST 840 (1460)
Q Consensus 761 s~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~ 840 (1460)
..|++.+-..+.|.+.|+..-+.|.......+.....+..++..--+.+..+...+.+|+.+..=+-.--..|..|.+++
T Consensus 692 e~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l 771 (1822)
T KOG4674|consen 692 ENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKL 771 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666655555555555555555555554443333333344444444
Q ss_pred HHHHHHHH-------HhHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 000499 841 LQKVEELQ-------FSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQD 913 (1460)
Q Consensus 841 ~~~veel~-------~sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~~~AqieifiLq~~l~D 913 (1460)
+..+..++ .+...-.+-..+-...=+.+|-+|+..+..|..+ ++.|..|
T Consensus 772 ~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~k------------------------lq~~~~~ 827 (1822)
T KOG4674|consen 772 SAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKK------------------------LQEKSSD 827 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHH
Confidence 43333333 2222222222222233333333333333333222 5555555
Q ss_pred HHhhhhhhHHHHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhcccCCCcch
Q 000499 914 LKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQLLEI--------LEIDADHGCETK 985 (1460)
Q Consensus 914 l~~kn~~ll~EcQk~~eas~~se~lIseLe~E~~~~q~e~~~L~~~~~~Lr~gi~qv~k~--------L~i~~~~g~~d~ 985 (1460)
+..-+..+=.. +.. +-.+|..++.++.....++..+...+.+|...+...-+. ++++++--..|.
T Consensus 828 ~r~l~~~~~~~---l~~----~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~ 900 (1822)
T KOG4674|consen 828 LRELTNSLEKQ---LEN----AQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDA 900 (1822)
T ss_pred HHHHHhhhhhH---HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhh
Confidence 55332222111 011 223333444444444444444444444444444444333 333332113343
Q ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhh
Q 000499 986 MEQDQSHQTLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQRE 1065 (1460)
Q Consensus 986 ~~~e~~l~~~l~~i~~~i~~l~~s~~~~q~enq~~~vEnsvL~t~L~ql~~e~~~L~~Ek~~L~~E~~~~s~q~l~Lq~e 1065 (1460)
...+. .|.....++.+++..+-.+.-.-.+.-....+.-+.|.+........+ ..++..++........|..+
T Consensus 901 ~~~~~----~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~---~~~ea~ie~~~~k~tslE~~ 973 (1822)
T KOG4674|consen 901 TILED----TLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETR---LELEAKIESLHKKITSLEEE 973 (1822)
T ss_pred hhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHH
Confidence 33333 477778888888888888877777777777777777777777666655 44556666666666666666
Q ss_pred hhhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHhHHH--------------HHHhHhhhhhh-------hhhhhh
Q 000499 1066 FPKLTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSELQGA--------------QQSLQDQNCKV-------LDEKKS 1124 (1460)
Q Consensus 1066 ~~eLle~n~qL~~~~~~~~~ree~lk~E~~~l~~~l~~l~~s--------------~~~lq~e~~~~-------~~e~~s 1124 (1460)
...|..-+.+|+..+.--..-+ ..+...+.++++-++.- ...++.++-+. ...|++
T Consensus 974 ls~L~~~~~~l~~e~~~~~k~~---e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~ 1050 (1822)
T KOG4674|consen 974 LSELEKEIENLREELELSTKGK---EDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYES 1050 (1822)
T ss_pred HHHHHHHHHHHHHHHhccccch---hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665555554432111111 11222333333333332 23333333332 334444
Q ss_pred HHHHhhhhHHhhhhhhhhhhhHHHHHhhhccchhhhhhhHHHHHHHHHHHHHhHhhhhcchhhHHHHHHHhhhhhhHHHH
Q 000499 1125 LMKKVLDLQEEKHSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKDGKLEDVQM 1204 (1460)
Q Consensus 1125 L~k~~~~l~e~~~~lEden~~~l~E~i~~~~ls~~~~~~~~Ek~~~l~~L~e~l~~L~~~~~eL~~~v~~l~~kle~~e~ 1204 (1460)
=...+.++..++..+..++..+-.+.-.|.-. ....-..+.+..+........|.++|....++..+++.
T Consensus 1051 el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~----------~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~ 1120 (1822)
T KOG4674|consen 1051 ELVQHADLTQKLIKLREEFAKCNDELLKLKKS----------RESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEK 1120 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------HHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555544443332211 11111122233334455566788888899999999999
Q ss_pred hhHHHHHHHHhhHHHHHh-hhhhhhhhhhHhhhhhhhhhhhhHHHHHH-----HHHHHhhhHhhHHHHHHHhhhhhhhhh
Q 000499 1205 QNSLLKQSLEKSENELVA-IGCVRDQLNCEIANGKDLLSRKEKELFVA-----EQILCSLQNERTELHMKVEDLTCKYDE 1278 (1460)
Q Consensus 1205 en~~Lk~~le~~~~eL~~-~~s~~~~l~~ei~~~~~~l~qkd~ellea-----e~~~~~~~~~~~El~~~ve~Lk~~~ee 1278 (1460)
.|.-|..-|+.+...... ..|....-..++.+.--.| +++.+++.. ..-...+......+|++|.||.-....
T Consensus 1121 qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~L-R~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~ 1199 (1822)
T KOG4674|consen 1121 QNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFL-RKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTA 1199 (1822)
T ss_pred HHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHH-HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888877776665432 1111111111222211111 223332222 222334556667788888888877766
Q ss_pred hHhHH----------hhhhhhHHhhh---hhhhhhhhhHHhHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhh
Q 000499 1279 AKIIQ----------EDQGKQIRKLT---EDYDCQIKETRCIHELNMKLEAELGKLLEELEGTRYREESLYHELEKERKH 1345 (1460)
Q Consensus 1279 a~~i~----------e~~ekqi~~Ls---~~~~~q~~Ei~~l~e~N~~Le~e~~~L~~E~~~~k~rEe~L~~elq~~~~e 1345 (1460)
.++-. .++=+++..+. +.+..=+++....-+-++.|+..+.+|+.++--+..+=..|..+++...++
T Consensus 1200 ~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ae 1279 (1822)
T KOG4674|consen 1200 ERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAE 1279 (1822)
T ss_pred HHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHH
Confidence 55543 11112222222 333333444444444444455555555555555555444455555554444
Q ss_pred HhhhHHHHHHHHhhhh-HHHHHHHHHhhhhHHHHHHHhhhhhhccchhhhHHHHHHHHhhhhhhhhhhhhhhhhhhhHHH
Q 000499 1346 AGLWETQATELFSELQ-ISSVCEVLRNEKAHELSRACENLEDRSNSNDIEINQLKEKANALECENGGLKAHLAASIPAVI 1424 (1460)
Q Consensus 1346 ~el~E~ea~~l~~dlq-~ssv~e~L~eekv~El~~~ce~Le~~~~~k~~ei~~Lkerv~~le~En~~Lk~~Lsay~~~i~ 1424 (1460)
....+.++...-.--| +..-..-.-.+-+..|...|.+|+..-..+...|..++.+++-+. ...+-++.+...-+.
T Consensus 1280 l~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q---~~~k~qld~l~~e~~ 1356 (1822)
T KOG4674|consen 1280 LKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQ---EKIKKQLDELNNEKA 1356 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4443333322111000 000001111233456677788888877777777777777666666 444555555555556
Q ss_pred hhhHhHHhhh
Q 000499 1425 SLKDSIRSLE 1434 (1460)
Q Consensus 1425 sL~d~i~~LE 1434 (1460)
.+.+.|..|+
T Consensus 1357 ~lt~~~~ql~ 1366 (1822)
T KOG4674|consen 1357 NLTKELEQLE 1366 (1822)
T ss_pred HHHHHHHHHH
Confidence 6555555553
No 3
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.93 E-value=4.7e-14 Score=183.84 Aligned_cols=1087 Identities=19% Similarity=0.195 Sum_probs=584.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000499 232 MGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREA 311 (1460)
Q Consensus 232 ~~kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea 311 (1460)
-.++...-..++..+..++-|-|-....|..-.+++....-.|..+-.+.-.-+.-.+....+.....+.+..++.+-+.
T Consensus 386 Ltk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~ 465 (1822)
T KOG4674|consen 386 LTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELES 465 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777778888999999999999999999999999888887777655544433433444455777777777777888777
Q ss_pred HHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHH---HHHHHHHhhhh
Q 000499 312 NIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDL-ARIEAEKEAAVVKYEECS---RMISALEDKLL 387 (1460)
Q Consensus 312 ~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel-~~l~~EKEa~~lqyqQcL---E~IS~LE~ki~ 387 (1460)
+..+++.|.--+--|+-.++..+..+.++-.+...+..=........ .......+.. |-.=| .=|-.|+.+=.
T Consensus 466 l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~~~~~es~S~~i---Ise~Lv~F~nI~eLqekN~ 542 (1822)
T KOG4674|consen 466 LKKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVSSDSTENESDSEEI---ISERLVEFSNINELQEKNV 542 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccCccHHHH---HHHHHHHhccHHHHHHHHH
Confidence 77777777777777777777777777666544444433333322222 1111111111 11111 11222222211
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHH
Q 000499 388 HSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAE 467 (1460)
Q Consensus 388 ~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE 467 (1460)
.+=.-++.|.+.++..+.+. . ..-...+..-.....++|..|+..+.+.-.-+..|-.+.+.....+-++|
T Consensus 543 eLL~~vR~Lae~lE~~E~~~---~------~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e 613 (1822)
T KOG4674|consen 543 ELLNAVRELAEKLEAAEKTQ---D------KTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELE 613 (1822)
T ss_pred HHHHHHHHHHHHHHHHhhhh---h------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 11112222222222222221 1 11111233333445566666666666666666666666666655555555
Q ss_pred HHH-h--------------HHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000499 468 EKC-L--------------LLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHL 532 (1460)
Q Consensus 468 ~~~-~--------------~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~L 532 (1460)
... . .++..+..|..+++...... ..-+.-.+.+++.|+..+.+= -..+-.+.+-
T Consensus 614 ~~~~~k~nss~~~~t~~~~~~e~~l~qLe~~le~~~~E~---~~~~~~l~e~~~~l~~ev~~i-------r~~l~k~~~~ 683 (1822)
T KOG4674|consen 614 DSHQLKPNSSALDQTEAPRAKEKRLRQLENELESYKKEK---RENLKKLQEDFDSLQKEVTAI-------RSQLEKLKNE 683 (1822)
T ss_pred ccccCCCCchhhcccccchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHH
Confidence 441 0 01333333333333222111 111222233333333333331 1112222222
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 533 HSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVEL 612 (1460)
Q Consensus 533 hSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~ 612 (1460)
..-+.+....|...|....+.+..+..++..|+..|.+++..++.+...-.++-.-++.+-.|+++||.-..-+-.=-.+
T Consensus 684 ~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~r 763 (1822)
T KOG4674|consen 684 LNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEER 763 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22234888999999999999999999999999999999988888777766777667888888888888766655444444
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH---
Q 000499 613 RVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEI--- 689 (1460)
Q Consensus 613 ~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~--- 689 (1460)
=+.+.+.|..+.+.+.-....|...+-.+...-.... ..+.+.+++|+...+.|+........+-..|...+--
T Consensus 764 L~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k---~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~ 840 (1822)
T KOG4674|consen 764 LSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATK---DKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLE 840 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4567777777777777666666665544444333332 2345677777777777776655555544444433321
Q ss_pred -----HHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhh
Q 000499 690 -----MEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLV 764 (1460)
Q Consensus 690 -----mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE 764 (1460)
++.+--.+.-+-.+++.+-..++.+-.++..|+.-..+.+-...++.+. +-+...-+...+|...+++.+.|.
T Consensus 841 ~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~--~~~~d~~~~~~~Lr~~~eq~~~l~ 918 (1822)
T KOG4674|consen 841 NAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSK--SSNEDATILEDTLRKELEEITDLK 918 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccc--chhhhhhhhhHHHHHHHHHHHHHH
Confidence 1222223444444555555556666666666666666666665555532 111122222234777899999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHH-------
Q 000499 765 NSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEK------- 837 (1460)
Q Consensus 765 ~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek------- 837 (1460)
..|-++..+.......+...+.++...+..+..+. ..+...+.........++.+..+|+++..++..+.
T Consensus 919 ~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~---~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~ 995 (1822)
T KOG4674|consen 919 EELTDALSQIREYQEEYSSLEQSLESVKSELDETR---LELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGK 995 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999999999999999999988888877776665 66777777777777777777777777777777666
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 000499 838 ESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEK 917 (1460)
Q Consensus 838 ~~~~~~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~~~AqieifiLq~~l~Dl~~k 917 (1460)
+....+.-.-..++.-+.+.|.....=....+..+-+.+-..-+..+--...|+.+.-. ---+-.-|.++..-
T Consensus 996 e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~-------ha~~~q~l~kl~ee 1068 (1822)
T KOG4674|consen 996 EDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQ-------HADLTQKLIKLREE 1068 (1822)
T ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 33344444445555556555555444444444444444333333333334444444322 22344556667777
Q ss_pred hhhhHHHHHHHHHhhhhHHHHHHHHHhhhhh----HHHH-------HHHHHHHHHHHHHHHHHHHHHHhhcc--cCCCcc
Q 000499 918 NFSLLFECQKLLQESSLSEKLIHKLENENCE----QQEE-------MRSLVDQIKVLRVQLYQLLEILEIDA--DHGCET 984 (1460)
Q Consensus 918 n~~ll~EcQk~~eas~~se~lIseLe~E~~~----~q~e-------~~~L~~~~~~Lr~gi~qv~k~L~i~~--~~g~~d 984 (1460)
++....|..++-.-.....-+.++++.-.-+ ...+ ...|..+|..|... +..+.-.. .+|+.+
T Consensus 1069 ~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~q----ie~~s~~~~~~n~S~~ 1144 (1822)
T KOG4674|consen 1069 FAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQ----FEELSQQSAVSNLSAM 1144 (1822)
T ss_pred HHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhhcccccc
Confidence 7777777666655555555555554433322 2222 23333333333332 22222221 245555
Q ss_pred hhhhhhhhHHHHHHHHhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHH---HHHHHHHH
Q 000499 985 KMEQDQSHQTLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATERNALAEEFR---IQSEQFVV 1061 (1460)
Q Consensus 985 ~~~~e~~l~~~l~~i~~~i~~l~~s~~~~q~enq~~~vEnsvL~t~L~ql~~e~~~L~~Ek~~L~~E~~---~~s~q~l~ 1061 (1460)
.....+ |+-+|..|.++..-+-.-+..++-+|-.+--..+.+-..+..+ ..--+..+..++ .-..++--
T Consensus 1145 ~~g~sd-L~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL-------~~sL~~~r~~~q~~a~s~~e~~~ 1216 (1822)
T KOG4674|consen 1145 LLGLSD-LQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDL-------QRSLTAERASSQKSAVSDDEHKE 1216 (1822)
T ss_pred ccchHH-HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhccchhhhhhhhH
Confidence 444333 5567777777777666666666666655555555544444444 333333333331 11122222
Q ss_pred hhhh---hhhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHhHHHHHHhHhhhh-------hhhhhhhhHHHHhhh
Q 000499 1062 LQRE---FPKLTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNC-------KVLDEKKSLMKKVLD 1131 (1460)
Q Consensus 1062 Lq~e---~~eLle~n~qL~~~~~~~~~ree~lk~E~~~l~~~l~~l~~s~~~lq~e~~-------~~~~e~~sL~k~~~~ 1131 (1460)
+.++ ..-|.+-|..||.+......+-..|..++..+...+..||.....++.++. ++=.++.--.+.+++
T Consensus 1217 i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~ 1296 (1822)
T KOG4674|consen 1217 ILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQD 1296 (1822)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 334557788888888888888777777766666666666666666655554 455555556677888
Q ss_pred hHHhhhhhhhhhhhHHHHHhhhccchhhhhhhHHHHHHHHHHHHHhHhhhhcchhhHHHHHHHhhhhhhHHHHhhHHHHH
Q 000499 1132 LQEEKHSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKDGKLEDVQMQNSLLKQ 1211 (1460)
Q Consensus 1132 l~e~~~~lEden~~~l~E~i~~~~ls~~~~~~~~Ek~~~l~~L~e~l~~L~~~~~eL~~~v~~l~~kle~~e~en~~Lk~ 1211 (1460)
|.++|...+-..+.=+. .++..|.+.+......+.+|..++..+. +......++++.
T Consensus 1297 L~~k~k~~d~~~~~kL~--------------------~ei~~Lk~el~~ke~~~~el~~~~~~~q---~~~k~qld~l~~ 1353 (1822)
T KOG4674|consen 1297 LLEKYKDSDKNDYEKLK--------------------SEISRLKEELEEKENLIAELKKELNRLQ---EKIKKQLDELNN 1353 (1822)
T ss_pred HHHHhhcCCHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 88887766654444221 1444455555544445555554444443 222222233333
Q ss_pred HHHhhHHHHHhhhhhhhhhhhHhhhhhhhhhhhhHHHHHHHHHHHhhhHhhHHHHHHHhhhhhhhhhhHhHHhhhhhhHH
Q 000499 1212 SLEKSENELVAIGCVRDQLNCEIANGKDLLSRKEKELFVAEQILCSLQNERTELHMKVEDLTCKYDEAKIIQEDQGKQIR 1291 (1460)
Q Consensus 1212 ~le~~~~eL~~~~s~~~~l~~ei~~~~~~l~qkd~elleae~~~~~~~~~~~El~~~ve~Lk~~~eea~~i~e~~ekqi~ 1291 (1460)
-...+.+.+..++.+...|.... .|+|..+-+|..+-....-++++.-++.-
T Consensus 1354 e~~~lt~~~~ql~~~~~rL~~~~----------------------------~e~~~q~~el~~~~~~~~~~~e~t~rk~e 1405 (1822)
T KOG4674|consen 1354 EKANLTKELEQLEDLKTRLAAAL----------------------------SEKNAQELELSDKKKAHELMQEDTSRKLE 1405 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444333222 23333333333333333333333333332
Q ss_pred hh------hhhhhhhhhhHHhHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhHhhhHHHHHHHHhhhhHHHH
Q 000499 1292 KL------TEDYDCQIKETRCIHELNMKLEAELGKLLEELEGTRYREESLYHELEKERKHAGLWETQATELFSELQISSV 1365 (1460)
Q Consensus 1292 ~L------s~~~~~q~~Ei~~l~e~N~~Le~e~~~L~~E~~~~k~rEe~L~~elq~~~~e~el~E~ea~~l~~dlq~ssv 1365 (1460)
++ +..+..-.+++.-.+.-=.++++++.....|.-+.+-+++. +.-++...++.........-.-|..--+
T Consensus 1406 ~~~~k~~~~~e~~sl~eeL~e~~q~~~~~~s~~e~i~~e~~~~~k~~~~--~~~e~~~~~i~~~~e~~~~~~~~~~~~~- 1482 (1822)
T KOG4674|consen 1406 KLKEKLELSEELESLKEELEELQQLQATLQSETEAITKELFEAKKEEEK--STTERLLEEIKKLLETVRKKTVDADSKS- 1482 (1822)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 22 22223333344444444445555555555555555555554 2223333333333333332222222111
Q ss_pred HHHHHhhhhHHHHHHHhhhhhhccchhhhHHHHHHHHhh---hhhhhhhhhhhhhhhhhHH
Q 000499 1366 CEVLRNEKAHELSRACENLEDRSNSNDIEINQLKEKANA---LECENGGLKAHLAASIPAV 1423 (1460)
Q Consensus 1366 ~e~L~eekv~El~~~ce~Le~~~~~k~~ei~~Lkerv~~---le~En~~Lk~~Lsay~~~i 1423 (1460)
.=+++--.++..+-+.+..+......++-++..|++. |+.+|++++.+|...+-.-
T Consensus 1483 --~~le~~k~e~~~e~e~~~~~~~~~~~E~lk~r~Rl~~eeq~~~~I~rl~~eLe~~~~~~ 1541 (1822)
T KOG4674|consen 1483 --ENLEGTKKELESEKEELKQRLTELAAENLKLRSRLAKEEQYQKEISRLKEELESTKEAK 1541 (1822)
T ss_pred --HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 1123333444444555555555555555555555543 3445555555555544443
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.92 E-value=1.7e-12 Score=172.16 Aligned_cols=764 Identities=21% Similarity=0.234 Sum_probs=376.6
Q ss_pred HHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHH---
Q 000499 322 KLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINK--- 398 (1460)
Q Consensus 322 ~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~--- 398 (1460)
.+..+..++...++....+.....+++.++..++..+..+...-.-....|..--..|+.|+.++...++...+++.
T Consensus 909 ~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk 988 (1930)
T KOG0161|consen 909 ELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKK 988 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555566666666666665555443322222222222223455555555554444444443
Q ss_pred -----------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000499 399 -----------VADKAESEVERLKQALGKLTEEKEALALQYQQC-------LEAISILEHKLARAEEEAQRLHSELDNGF 460 (1460)
Q Consensus 399 -----------~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~-------~~kI~~LE~els~sQEEv~RL~~Ei~~~~ 460 (1460)
.+.-.+.++..|.+.+.++....+.+...+.+- ..+...++.++...|+.+.-++...+...
T Consensus 989 ~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~ 1068 (1930)
T KOG0161|consen 989 ELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELD 1068 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333445555555555556666555555555433 33333444444444444433333333333
Q ss_pred hhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH
Q 000499 461 AKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDEL 540 (1460)
Q Consensus 461 ~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~ 540 (1460)
..| ...+.+...+++.++.....+....+.+.+.+..|..|...++.++..+..++.+...|..-....++++
T Consensus 1069 ~~l-------~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~L 1141 (1930)
T KOG0161|consen 1069 NQL-------KKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEEL 1141 (1930)
T ss_pred HHH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 3345556777777777777777777777777777888888888888888888877777422211111111
Q ss_pred ----HHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000499 541 ----RSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQ 616 (1460)
Q Consensus 541 ----~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~e 616 (1460)
.....-++.....=.++..-+.+|+++...+...+..+... ...++..+.+.+..++....+++.+
T Consensus 1142 ee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~---~~~~~~el~~qle~l~~~k~~leke------- 1211 (1930)
T KOG0161|consen 1142 EEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKK---HADSLAELQEQLEQLQKDKAKLEKE------- 1211 (1930)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 11111111111111112222233333333333333333322 2235666666666666655555443
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHH-------HHHhHHHHHHHHHHHHH
Q 000499 617 RNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEV-------YERDRCEKVALLEKLEI 689 (1460)
Q Consensus 617 k~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~-------~s~~~~EK~~L~~kLq~ 689 (1460)
|.-||.++..+..+++.+...-.....-. ..+...+.++|..+..+... ++....|-.-+..+|..
T Consensus 1212 k~~lq~e~~~l~~ev~~~~~~k~~~e~~~-------k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee 1284 (1930)
T KOG0161|consen 1212 KSDLQREIADLAAELEQLSSEKKDLEKKD-------KKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEE 1284 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHH
Confidence 23444444444333333332211111100 01112333333333333332 22222222222222222
Q ss_pred HHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhh
Q 000499 690 MEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFD 769 (1460)
Q Consensus 690 mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd 769 (1460)
.+. +.+-+-+..+.+...|+.++..+-.=--.-..|.+....+..|.+.|-.| ++.=.+-...|...+|+
T Consensus 1285 ~e~---~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~-------leee~e~~~~l~r~lsk 1354 (1930)
T KOG0161|consen 1285 AEA---KLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQ-------LEEEQEAKNELERKLSK 1354 (1930)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 211 11112222222222222222222221112222222222333333333333 33335556677888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHH
Q 000499 770 ANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQF 849 (1460)
Q Consensus 770 ~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~ 849 (1460)
++++....+.|..+.-..+....+ ..+..+...+...++.+....-.+..++.-...++.|-..+.-+++..+.
T Consensus 1355 ~~~e~~~~~~k~e~~~~~~~eele------e~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~ 1428 (1930)
T KOG0161|consen 1355 ANAELAQWKKKFEEEVLQRLEELE------ELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRA 1428 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 888888888888887666333221 23333333444444444444444444444444444444333333333322
Q ss_pred hHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHH-------HHHHHHhhhhhhH
Q 000499 850 SLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQK-------YIQDLKEKNFSLL 922 (1460)
Q Consensus 850 sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~~~AqieifiLq~-------~l~Dl~~kn~~ll 922 (1460)
....-.+++ +-.++.+++.-...--++.+ ++..++..-+...++|-+.+ -++.+...|=.+.
T Consensus 1429 ~~~~le~k~----k~f~k~l~e~k~~~e~l~~E-------ld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~ 1497 (1930)
T KOG0161|consen 1429 AVAALEKKQ----KRFEKLLAEWKKKLEKLQAE-------LDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLS 1497 (1930)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211111111 11223333333332222222 22333333333334444333 4555666788888
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcccCC---------Ccchhhhhhhh
Q 000499 923 FECQKLLQESSLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQL-LEILEIDADHG---------CETKMEQDQSH 992 (1460)
Q Consensus 923 ~EcQk~~eas~~se~lIseLe~E~~~~q~e~~~L~~~~~~Lr~gi~qv-~k~L~i~~~~g---------~~d~~~~e~~l 992 (1460)
.+|..+...-.=..+-+.+|+...+-.++++.-|...+.-+-.+..-. .+.|+++...+ -.+...+-+.+
T Consensus 1498 ~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~ 1577 (1930)
T KOG0161|consen 1498 QEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEEL 1577 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 888888888888888888888888888877777766666555542110 01111111111 10000000000
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHhhhHHHHHHHHHHHHH-------HHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhh
Q 000499 993 QTLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVAL-------LGQLKLEAENLATERNALAEEFRIQSEQFVVLQRE 1065 (1460)
Q Consensus 993 ~~~l~~i~~~i~~l~~s~~~~q~enq~~~vEnsvL~t~-------L~ql~~e~~~L~~Ek~~L~~E~~~~s~q~l~Lq~e 1065 (1460)
..-.+. .|..++.++. + -.--++-.+++ +..+..-.....-.+-.+-+-+.....+.-.||..
T Consensus 1578 rk~~~~---~i~~~q~~Le-~------E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~ 1647 (1930)
T KOG0161|consen 1578 RKNLQR---QLESLQAELE-A------ETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRE 1647 (1930)
T ss_pred HHHHHH---HHHHHHHhhh-H------HHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHH
Confidence 000000 0111111111 0 00112333333 33333333444444445556666677777788888
Q ss_pred hhhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhhhhhhhHHHHhhhhHHhhhhhhhhhhh
Q 000499 1066 FPKLTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEKHSLEEENCV 1145 (1460)
Q Consensus 1066 ~~eLle~n~qL~~~~~~~~~ree~lk~E~~~l~~~l~~l~~s~~~lq~e~~~~~~e~~sL~k~~~~l~e~~~~lEden~~ 1145 (1460)
.....-.+++++..+..-..|-..+.+|++.|...+..+-.+.+.+..|.--+.+....+......+...+..+|.+..+
T Consensus 1648 ~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~ 1727 (1930)
T KOG0161|consen 1648 LEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQ 1727 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999988888888888888888888888888887
Q ss_pred H
Q 000499 1146 M 1146 (1460)
Q Consensus 1146 ~ 1146 (1460)
+
T Consensus 1728 l 1728 (1930)
T KOG0161|consen 1728 L 1728 (1930)
T ss_pred H
Confidence 3
No 5
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.90 E-value=4.1e-12 Score=168.61 Aligned_cols=926 Identities=22% Similarity=0.214 Sum_probs=475.6
Q ss_pred HHhHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhchhhH-------hhhHHHHHHHHHHHHHHH-------HHHHHH
Q 000499 249 LEAEKEAGLLQ---YRQSLERLSNLESEVSHAREDSKGLSEQ-------ASIAEAEVQTLKEALARL-------ETEREA 311 (1460)
Q Consensus 249 LqtEKE~~~~q---Y~~slek~~~LE~~is~aQ~~~~~L~er-------a~~ae~E~~sLk~~la~L-------q~Ekea 311 (1460)
|++|++...-. +..-.++-..+|..+.++...+....++ +.+++.+++.++..+..+ +.|+.+
T Consensus 882 l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~ 961 (1930)
T KOG0161|consen 882 LQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNA 961 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655432 3334455566777777777776666553 445566666666666543 334333
Q ss_pred HHH-------HHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 000499 312 NIR-------QYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALED 384 (1460)
Q Consensus 312 ~Ll-------qykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ 384 (1460)
+-- ...+|-+.+++|-..-..-++-.+.+...+...+.+++.|...++++.+.-+.....+.+=-....++|.
T Consensus 962 ~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek 1041 (1930)
T KOG0161|consen 962 AENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEK 1041 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 3344666666666666666666666677788888888889999999988888777666654445555555
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 000499 385 KLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLK 464 (1460)
Q Consensus 385 ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~ 464 (1460)
....++.+..-+.+.+..+......|...+.+...+...+..++++...-+..+...+...+..+.-|..+++.......
T Consensus 1042 ~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~ 1121 (1930)
T KOG0161|consen 1042 AKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRA 1121 (1930)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544445555566667777777777777777777777777777777777777777778888888888888888
Q ss_pred hHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q 000499 465 GAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLA 544 (1460)
Q Consensus 465 ~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~ 544 (1460)
.+|.....|..+...|..+++...+...++..--.-+-.|+.+++..++++...+ +..+..+.+.|+.+-.++..-.
T Consensus 1122 K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~---e~~~~~lr~~~~~~~~el~~ql 1198 (1930)
T KOG0161|consen 1122 KAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDH---EAQIEELRKKHADSLAELQEQL 1198 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877787777777777777766554444333455568888888888754433 4455555556655544444443
Q ss_pred HHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 000499 545 AELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEI 624 (1460)
Q Consensus 545 ~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el 624 (1460)
..++..+ ..++.-+.+|+.++..+..++..+..-....+...+.+...+..|...+..+..-+.--...+..++.++
T Consensus 1199 e~l~~~k---~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~ 1275 (1930)
T KOG0161|consen 1199 EQLQKDK---AKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNEN 1275 (1930)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3333333 3446677777777777777766665555555555666666666666655554432221112223333333
Q ss_pred HhhHHH-------HHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000499 625 YCLKEE-------LNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKN 697 (1460)
Q Consensus 625 ~~lkee-------~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkn 697 (1460)
..+... ...+.+....+..+++.+ +..+.+---....|-..+.....|++.|.+++.. =.+-.
T Consensus 1276 ~~l~~~lee~e~~~~~~~r~~~~~~~qle~~-------k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~lee---e~e~~ 1345 (1930)
T KOG0161|consen 1276 EELSRQLEEAEAKLSALSRDKQALESQLEEL-------KRQLEEETREKSALENALRQLEHELDLLREQLEE---EQEAK 1345 (1930)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 222222 222222222333333222 2222222222344444444444554444444433 12335
Q ss_pred HHHhhhhhhhhHhhhhHHHHHHHHHHHH-HHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Q 000499 698 AVLENSLSDLNVELEGVRDKVKALEEVC-QNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEG 776 (1460)
Q Consensus 698 s~LE~SLSdan~ELegLReK~K~LEesc-~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~ 776 (1460)
+-|+.-+|.+|+++..-|.|....-..| .-+.+.|- .+-..++...+.++-+.-++..||+....+..|++.
T Consensus 1346 ~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk-------~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d 1418 (1930)
T KOG0161|consen 1346 NELERKLSKANAELAQWKKKFEEEVLQRLEELEELKK-------KLQQRLQELEEQIEAANAKNASLEKAKNRLQQELED 1418 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5677778888888888887765544432 22333333 333444444444444444444444444444444433
Q ss_pred HHH--------------HHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHH
Q 000499 777 LRA--------------KSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQ 842 (1460)
Q Consensus 777 lr~--------------K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~ 842 (1460)
++. |.+.++.-+..++.....+..++..-.-........+..+...|.++.+-.-.+..
T Consensus 1419 ~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~r------- 1491 (1930)
T KOG0161|consen 1419 LQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRR------- 1491 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 333 33444444444444444555555554444555555555555555554443333333
Q ss_pred HHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhh-------hHHHHHHHHhhHHHHHHHHHHH----
Q 000499 843 KVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKA-------YEEELDKALDAQIEIFITQKYI---- 911 (1460)
Q Consensus 843 ~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~-------~eeE~dk~~~AqieifiLq~~l---- 911 (1460)
.+..+..++.+......--.+.+.+||+....+..+..-+... ++-+.++...+|++.--+..-+
T Consensus 1492 ----enk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l 1567 (1930)
T KOG0161|consen 1492 ----ENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRL 1567 (1930)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443333333333333333333333332222222 3344555555555533222111
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhHHHHHHHHHhhhhhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000499 912 QDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQE-------------EMRSLVDQIKVLRVQLYQLLEILEIDA 978 (1460)
Q Consensus 912 ~Dl~~kn~~ll~EcQk~~eas~~se~lIseLe~E~~~~q~-------------e~~~L~~~~~~Lr~gi~qv~k~L~i~~ 978 (1460)
++-.+-.-..=-.| ....+.+++.|++|.+...+ ++++-+++-.+-....+..++.++...
T Consensus 1568 ~ek~Ee~E~~rk~~------~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~ 1641 (1930)
T KOG0161|consen 1568 QEKDEEIEELRKNL------QRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQL 1641 (1930)
T ss_pred HhhhHHHHHHHHHH------HHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHH
Confidence 11111111111112 22334455566666555222 222222222222222222222222110
Q ss_pred cCCCcchhhhhhhhHHHHHHHHhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 000499 979 DHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQSEQ 1058 (1460)
Q Consensus 979 ~~g~~d~~~~e~~l~~~l~~i~~~i~~l~~s~~~~q~enq~~~vEnsvL~t~L~ql~~e~~~L~~Ek~~L~~E~~~~s~q 1058 (1460)
..+|.-+....---+++..-+..++....-+-.|+--|-+-+.++-...+.++.|...+...+.....+
T Consensus 1642 -----------k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~ 1710 (1930)
T KOG0161|consen 1642 -----------KELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQ 1710 (1930)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 112233444444444555555555566666666666666666666666666666666555555555444
Q ss_pred HHHhhhhhh----hHHHHhHHHHHHHHh---hhhhHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhhhhhhhHHHHhhh
Q 000499 1059 FVVLQREFP----KLTEINEELRVEVAE---RNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLD 1131 (1460)
Q Consensus 1059 ~l~Lq~e~~----eLle~n~qL~~~~~~---~~~ree~lk~E~~~l~~~l~~l~~s~~~lq~e~~~~~~e~~sL~k~~~~ 1131 (1460)
...+-..+- ++.-+..+|...+.. +++|-...-+.+..+..+| ..=|+-+.++-..+.+|.+.+.|
T Consensus 1711 ~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el-------~~Eq~~~~~le~~k~~LE~~~kd 1783 (1930)
T KOG0161|consen 1711 NSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEEL-------RKEQETSQKLERLKKSLERQVKD 1783 (1930)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332221 223333333333332 2333333333333333333 33445555556666677777776
Q ss_pred hHHhhhhhhhhhhhHHHHHhhhccchhhhhhhHHHHHHHHHHHHHhHhhhhcchhhHHHHHHHhhhhhhHHHHhhHHHHH
Q 000499 1132 LQEEKHSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKDGKLEDVQMQNSLLKQ 1211 (1460)
Q Consensus 1132 l~e~~~~lEden~~~l~E~i~~~~ls~~~~~~~~Ek~~~l~~L~e~l~~L~~~~~eL~~~v~~l~~kle~~e~en~~Lk~ 1211 (1460)
|.-....+|.- ++ -.++-.+.-=-..+.+|...|+.=..-+.+=...++-+.++...++.....-+.
T Consensus 1784 Lq~rL~e~E~~--a~-----------~~~k~~i~~Learir~LE~~l~~E~~~~~e~~k~~rk~er~vkEl~~q~eed~k 1850 (1930)
T KOG0161|consen 1784 LQLRLDEAEQA--AL-----------KGGKKQIAKLEARIRELESELEGEQRRKAEAIKGLRKKERRVKELQFQVEEDKK 1850 (1930)
T ss_pred HHHHHHHHHHh--hh-----------hccHHHHHHHHHHHHHHHHHHhHhhhhhHHHhHHHHHHHHHHHHHHHHhhhhhh
Confidence 66655544421 11 112211221122255566656555555555555566666666666666666666
Q ss_pred HHHhhHHHHHhhhhhhhhhhhHhhhhhhhhhhhh
Q 000499 1212 SLEKSENELVAIGCVRDQLNCEIANGKDLLSRKE 1245 (1460)
Q Consensus 1212 ~le~~~~eL~~~~s~~~~l~~ei~~~~~~l~qkd 1245 (1460)
.++.+.+.......-.-.+--|+.-+.....++-
T Consensus 1851 ~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~ 1884 (1930)
T KOG0161|consen 1851 NIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNL 1884 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6665555444443333333334333333333333
No 6
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=2.2e-08 Score=133.51 Aligned_cols=282 Identities=17% Similarity=0.227 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccc---hhhhHHHHHH
Q 000499 588 SIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPEN---FGLSVKELQD 664 (1460)
Q Consensus 588 sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~---~~~~VkeLQ~ 664 (1460)
.+..++.++..+.......... .....+..+|.....++..|..+...|..++..++-.... +...-+++..
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (1311)
T TIGR00606 472 RILELDQELRKAERELSKAEKN-----SLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMD 546 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666555444332 2345566666666666667776666666666555433222 1223334444
Q ss_pred HhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHh
Q 000499 665 ENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFS 744 (1460)
Q Consensus 665 ~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvS 744 (1460)
....|....+.+...=..++. .. ..+..|...+.....++..++.++..++..+..+....+.+..+...+-.
T Consensus 547 k~~~~~~~~~~~~~~~~~~~~------~~-~~~~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~ 619 (1311)
T TIGR00606 547 KDEQIRKIKSRHSDELTSLLG------YF-PNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEE 619 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhcC------CC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444321111110 00 11244566666666666777777777777777777777777777777777
Q ss_pred hhhHHHHHHHh------hhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh--hhhhhhhHHhHHHHHHhHHHHHHHH
Q 000499 745 QLQDVNENLKK------LSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLL--DNEKSCLITERVNLVSQLDIARKGL 816 (1460)
Q Consensus 745 QLq~~~~~l~~------L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l--~~e~s~l~~Ek~~L~sQl~~~~~~l 816 (1460)
+|+....++.+ ..+-...++.+|..+..++..+..-......+.... +.+++|....+.- ...+..
T Consensus 620 eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f------~~eee~ 693 (1311)
T TIGR00606 620 QLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVF------QTEAEL 693 (1311)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCC------CChhHH
Confidence 77776666652 222333444455555555555555555555566666 6666666633221 111112
Q ss_pred HHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhh
Q 000499 817 KDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRK 887 (1460)
Q Consensus 817 ~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~ 887 (1460)
..+.++.....++..+...+....+.+.++....|..-.-.+..+.......+..++..+.-+.....--.
T Consensus 694 ~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~ 764 (1311)
T TIGR00606 694 QEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLK 764 (1311)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Confidence 23333333344444444556667777777777777777777777777777777777777766555444333
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.72 E-value=5.7e-09 Score=134.97 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhhhhhchhh
Q 000499 267 LSNLESEVSHAREDSKGLSE 286 (1460)
Q Consensus 267 ~~~LE~~is~aQ~~~~~L~e 286 (1460)
+..+...+..++.++..+++
T Consensus 167 ~~~~~~~~~~t~~nL~r~~d 186 (1179)
T TIGR02168 167 ISKYKERRKETERKLERTRE 186 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444433333
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.70 E-value=2.9e-09 Score=138.14 Aligned_cols=15 Identities=7% Similarity=0.282 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 000499 960 IKVLRVQLYQLLEIL 974 (1460)
Q Consensus 960 ~~~Lr~gi~qv~k~L 974 (1460)
|..+......++..|
T Consensus 1024 f~~~~~~f~~~~~~l 1038 (1164)
T TIGR02169 1024 FEAINENFNEIFAEL 1038 (1164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.69 E-value=2.2e-08 Score=129.60 Aligned_cols=54 Identities=15% Similarity=0.082 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000499 921 LLFECQKLLQESSLSEKLIHKLENENCEQQEE-MRSLVDQIKVLRVQLYQLLEIL 974 (1460)
Q Consensus 921 ll~EcQk~~eas~~se~lIseLe~E~~~~q~e-~~~L~~~~~~Lr~gi~qv~k~L 974 (1460)
+-.+++.+..+-.-....|.++..+....-.+ .+.+..=+..|..-+..++..|
T Consensus 998 l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~~~ 1052 (1179)
T TIGR02168 998 LKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFPKL 1052 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777888777777765433 4455555666666666666654
No 10
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.69 E-value=8.2e-08 Score=128.15 Aligned_cols=353 Identities=13% Similarity=0.122 Sum_probs=185.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHh---HHHHhhHhhHHHHHHHHHH--
Q 000499 416 KLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCL---LLERSNQTLHSELESMVQK-- 490 (1460)
Q Consensus 416 ~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~---~LE~~~q~L~sE~e~L~ek-- 490 (1460)
............++.+..++...+..++...+.+.....++.....+|..++.... .|+..+..+...++.....
T Consensus 416 e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (1311)
T TIGR00606 416 DLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSL 495 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 35555666777777777777777777777777777777777777777765544322 2222333333333222221
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHH
Q 000499 491 MGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEK 570 (1460)
Q Consensus 491 l~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~ 570 (1460)
......++.+++.++..|...+..-..+...+. .++-..-++..+..++......|..+ +..
T Consensus 496 ~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~k~~~~~~~----------~~~ 557 (1311)
T TIGR00606 496 TETLKKEVKSLQNEKADLDRKLRKLDQEMEQLN--------HHTTTRTQMEMLTKDKMDKDEQIRKI----------KSR 557 (1311)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH
Confidence 112344445555555555444444222222111 11222333344444444444444333 333
Q ss_pred HHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCC
Q 000499 571 VKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSL 650 (1460)
Q Consensus 571 l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~ 650 (1460)
+......+-. ++.. . ..+++.+.++......++.++.---.+...+...+..+..++..+........+.|... -
T Consensus 558 ~~~~~~~~~~-~~~~--~-~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~-~ 632 (1311)
T TIGR00606 558 HSDELTSLLG-YFPN--K-KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDV-C 632 (1311)
T ss_pred HHHHHHHhcC-CCCC--c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 3333322222 2221 1 34455555555544444444443334445677777777888888888888888777732 2
Q ss_pred CccchhhhHHHHHHHhhhhHHHHHHhHH-------------------------------HHHHHHHHHHHH-HHHHHHHH
Q 000499 651 NPENFGLSVKELQDENSKLKEVYERDRC-------------------------------EKVALLEKLEIM-EKLLEKNA 698 (1460)
Q Consensus 651 ~~e~~~~~VkeLQ~~n~~LkE~~s~~~~-------------------------------EK~~L~~kLq~m-ekLlEkns 698 (1460)
.++.+-..+.++++...........+.+ +...++.+|+.+ .++-++..
T Consensus 633 ~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~ 712 (1311)
T TIGR00606 633 GSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLK 712 (1311)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHH
Confidence 5666777888888877666644333222 224566666653 33445566
Q ss_pred HHhhhhhhhhHhhhhHHHH------HHHH-HHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhh-
Q 000499 699 VLENSLSDLNVELEGVRDK------VKAL-EEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDA- 770 (1460)
Q Consensus 699 ~LE~SLSdan~ELegLReK------~K~L-Eesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~- 770 (1460)
-++..+.+....++.++.- +..+ ..-+..+..+...+..+...+.+++..+...+..+......++..+.++
T Consensus 713 ~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~ 792 (1311)
T TIGR00606 713 STESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVT 792 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6666666666666666643 2222 1333344555555555555555555555555555555554454443333
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHh
Q 000499 771 -----NAEVEGLRAKSKSLEDSCLLL 791 (1460)
Q Consensus 771 -----n~ElE~lr~K~k~lEes~~~l 791 (1460)
..++..++.+++.++..+...
T Consensus 793 ~i~r~~~ei~~l~~qie~l~~~l~~~ 818 (1311)
T TIGR00606 793 IMERFQMELKDVERKIAQQAAKLQGS 818 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 666666666666666555543
No 11
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.66 E-value=5.5e-08 Score=126.51 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=31.6
Q ss_pred HHHHhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHH
Q 000499 997 DQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATERNALAEEFR 1053 (1460)
Q Consensus 997 ~~i~~~i~~l~~s~~~~q~enq~~~vEnsvL~t~L~ql~~e~~~L~~Ek~~L~~E~~ 1053 (1460)
..+..++..+...+.....+|...+.+---+..-+..+.....+|...+..|..-+.
T Consensus 954 ~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~ 1010 (1164)
T TIGR02169 954 EDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIE 1010 (1164)
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555666666666666555555555555555555555555544433
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=99.57 E-value=1.4e-08 Score=129.90 Aligned_cols=176 Identities=19% Similarity=0.207 Sum_probs=87.3
Q ss_pred HHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 000499 382 LEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFA 461 (1460)
Q Consensus 382 LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~ 461 (1460)
++.++..+......++..+..++.++..|...+.........+.....++..++..++..+...+.++..+..+......
T Consensus 270 ~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~ 349 (880)
T PRK02224 270 TEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLRE 349 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444555555555555544555555566666666666666666666666666665555555
Q ss_pred hhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Q 000499 462 KLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELR 541 (1460)
Q Consensus 462 kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~ 541 (1460)
.+..++.....++.....+..+...+..++.....++.....++..+...+.+ ++..+..+. ..+.
T Consensus 350 ~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~-------~~~~~~~~e-------~~l~ 415 (880)
T PRK02224 350 DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGD-------APVDLGNAE-------DFLE 415 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------chhhhhhhH-------HHHH
Confidence 55555555555554455555555555555544444444444444444444432 222222222 2233
Q ss_pred HHHHHHHHHHHHHHHhhhchHhHHHHHHHH
Q 000499 542 SLAAELQNRAQILKDMGTRNQSLQEEVEKV 571 (1460)
Q Consensus 542 ~L~~Ei~~~~~~L~~le~~k~~L~eev~~l 571 (1460)
.+..++..+...+..++.....+...+..+
T Consensus 416 ~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 445 (880)
T PRK02224 416 ELREERDELREREAELEATLRTARERVEEA 445 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555554444444444444
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=99.52 E-value=4.6e-08 Score=125.25 Aligned_cols=58 Identities=31% Similarity=0.397 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc
Q 000499 591 NLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESV 648 (1460)
Q Consensus 591 ~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l 648 (1460)
........|++....++.++.-.....+.+..+...+.+++..+..+...+...+..+
T Consensus 534 ~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 591 (880)
T PRK02224 534 EKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL 591 (880)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443344444444444444445555555554444444444
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.48 E-value=4.3e-06 Score=110.96 Aligned_cols=52 Identities=29% Similarity=0.436 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000499 315 QYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKE 366 (1460)
Q Consensus 315 qykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKE 366 (1460)
.|..-...+..+...++..+++...+..+...++.++..++..+..+..+..
T Consensus 233 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~ 284 (1163)
T COG1196 233 KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELE 284 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555555555555555555555544333
No 15
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.45 E-value=1.3e-06 Score=110.58 Aligned_cols=314 Identities=20% Similarity=0.245 Sum_probs=173.4
Q ss_pred HhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhHHHHHhHhHHHHHHHHHH
Q 000499 277 AREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQ-------------YQQCLDKLSNMEKNISRAEADAVELSDR 343 (1460)
Q Consensus 277 aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~Llq-------------ykqClE~Is~LE~~~s~aqeeak~lneR 343 (1460)
++....-++..+..+..+++.|...| +.+.+......+ |--....+..|....-.++.++..+...
T Consensus 58 ~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~ 136 (775)
T PF10174_consen 58 LKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERLRKT 136 (775)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444556666677776666 555544332222 2233455667777777888888888888
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHH-
Q 000499 344 ASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLH--SEEDSKRINKVADKAESEVERLKQALGKLTEE- 420 (1460)
Q Consensus 344 a~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~--aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~ee- 420 (1460)
+.+++..+.++++++....++.+-..-.. +.+-.. +.........++..++..+..|...+......
T Consensus 137 lE~~q~~~e~~q~~l~~~~eei~kL~e~L----------~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~ 206 (775)
T PF10174_consen 137 LEELQLRIETQQQTLDKADEEIEKLQEML----------QSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEH 206 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999998888877665432211 100000 01111111122223333333332222222222
Q ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhH
Q 000499 421 -------------------KEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLH 481 (1460)
Q Consensus 421 -------------------keal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~ 481 (1460)
-++++.-++....+|.++|..+-..+.++.+|.+.+.....--..+...+..-.+.-..++
T Consensus 207 ~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK 286 (775)
T PF10174_consen 207 MEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMK 286 (775)
T ss_pred hhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHH
Confidence 2345666667788999999999999999999987654333322222222222222223344
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhch
Q 000499 482 SELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRN 561 (1460)
Q Consensus 482 sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k 561 (1460)
+.++.+...++-.+.++...+.++..+.....|-..++--.-.+|...+.-.+..|-++-+|..++......++--..+.
T Consensus 287 ~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~ 366 (775)
T PF10174_consen 287 SKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQI 366 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555556556666665555555544444444455555555556666777777777777776666666666
Q ss_pred HhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHH
Q 000499 562 QSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRE 601 (1460)
Q Consensus 562 ~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE 601 (1460)
..++.+....+-|+..|.+.+-....-|..||..|.+|-+
T Consensus 367 ~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee 406 (775)
T PF10174_consen 367 EKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEE 406 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555555555544444444444444444443
No 16
>PRK03918 chromosome segregation protein; Provisional
Probab=99.39 E-value=7.3e-06 Score=105.18 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000499 255 AGLLQYRQSLERLSNLESE 273 (1460)
Q Consensus 255 ~~~~qY~~slek~~~LE~~ 273 (1460)
|+.-.|....+++....+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~ 173 (880)
T PRK03918 155 LGLDDYENAYKNLGEVIKE 173 (880)
T ss_pred hCCHHHHHHHHHHHHHHHH
Confidence 5666676666665554333
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.39 E-value=1.4e-05 Score=106.07 Aligned_cols=307 Identities=24% Similarity=0.323 Sum_probs=168.6
Q ss_pred HHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHH
Q 000499 318 QCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRIN 397 (1460)
Q Consensus 318 qClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln 397 (1460)
.|-+.+..++.++.....++... .++..++.++..+. ......+|.+-...+..+...+..+++....+.
T Consensus 190 ~~~~~~~el~~~l~~L~~q~~~a--------~~y~~l~~e~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 259 (1163)
T COG1196 190 RLEDLLEELEKQLEKLERQAEKA--------ERYQELKAELRELE--LALLLAKLKELRKELEELEEELSRLEEELEELQ 259 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444332 23444444444442 222333455556677777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhh
Q 000499 398 KVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSN 477 (1460)
Q Consensus 398 ~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~ 477 (1460)
..+..+..++..++..+..+.......+..+......+..++..+....+.+..+...+......+..++.....++..+
T Consensus 260 ~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1163)
T COG1196 260 EELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEEL 339 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87888888888888888888888888777777777788888888888888888888777777777666666544443333
Q ss_pred HhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Q 000499 478 QTLHSELESMVQKMGSQSQELTEKQKELGRLWT-CIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKD 556 (1460)
Q Consensus 478 q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~-slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~ 556 (1460)
...... ...+......+.....+.+.... ..++....+......+..+..-.++.+.++..+..++..+...++.
T Consensus 340 ~~~~~~----~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~ 415 (1163)
T COG1196 340 EERETL----LEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLER 415 (1163)
T ss_pred HHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332111 11111111222222222222222 2222233334444444444455555556666666666666555555
Q ss_pred hhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHH
Q 000499 557 MGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNK 636 (1460)
Q Consensus 557 le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~ 636 (1460)
+.....++..++..+..+...+... +..+..++..|.+.+..+.....-.-.+-..++..++..+.++..+..
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 488 (1163)
T COG1196 416 LSERLEDLKEELKELEAELEELQTE-------LEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEA 488 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544443333 333444444444444333333332222334566666666777776666
Q ss_pred HHHHHHHHH
Q 000499 637 KHQAMVEQV 645 (1460)
Q Consensus 637 k~~~l~e~l 645 (1460)
++..+....
T Consensus 489 ~~~~l~~~~ 497 (1163)
T COG1196 489 RLDRLEAEQ 497 (1163)
T ss_pred HHHHHHHHh
Confidence 665555543
No 18
>PRK03918 chromosome segregation protein; Provisional
Probab=99.34 E-value=1.6e-05 Score=102.09 Aligned_cols=38 Identities=18% Similarity=0.362 Sum_probs=16.8
Q ss_pred HhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000499 324 SNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARI 361 (1460)
Q Consensus 324 s~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l 361 (1460)
..++..+.........+..++...+.++..++..+..+
T Consensus 241 ~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l 278 (880)
T PRK03918 241 EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEL 278 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444555444444
No 19
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.27 E-value=3.9e-05 Score=97.63 Aligned_cols=479 Identities=19% Similarity=0.219 Sum_probs=214.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------HHHHHH-------HhhhhhchhhHhhhHHHHHHHH
Q 000499 232 MGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNL------ESEVSH-------AREDSKGLSEQASIAEAEVQTL 298 (1460)
Q Consensus 232 ~~kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~L------E~~is~-------aQ~~~~~L~era~~ae~E~~sL 298 (1460)
..++..+|+.|+..+ ..+.|......+.+..-..+..+ ..++.. ++.++-.|.+.+-+++..+.++
T Consensus 69 ~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~ 147 (775)
T PF10174_consen 69 NQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQ 147 (775)
T ss_pred HHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347889999999999 88888776666533333222222 222222 2233333333333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-----
Q 000499 299 KEALARLETEREANIRQYQQCLDKLSNMEKNIS--RAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVK----- 371 (1460)
Q Consensus 299 k~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s--~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lq----- 371 (1460)
++++...+++ ...|.+.+ +.+-. .+.........|+..++..+..|..-+.....+...+.-+
T Consensus 148 q~~l~~~~ee-------i~kL~e~L---~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~ 217 (775)
T PF10174_consen 148 QQTLDKADEE-------IEKLQEML---QSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRL 217 (775)
T ss_pred HHHHHHHHHH-------HHHHHHHH---hhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh
Confidence 4444333333 23333333 11111 3334444455677777777777776666665555333212
Q ss_pred -----------HHHHH----HHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000499 372 -----------YEECS----RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAIS 436 (1460)
Q Consensus 372 -----------yqQcL----E~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~ 436 (1460)
|+.++ .+|+.||.-|-.++.++.++......+...-..+.+. .+.-......+-.++-
T Consensus 218 ~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~-------le~~~s~~~~mK~k~d 290 (775)
T PF10174_consen 218 QMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQ-------LEVYKSHSLAMKSKMD 290 (775)
T ss_pred hcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHH-------HHHHHhhHHHHHHHHH
Confidence 22233 2455555555555555554443322221111111111 1111111112223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000499 437 ILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEER 516 (1460)
Q Consensus 437 ~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~ 516 (1460)
.+..+++..-.|+-.|..++.+......+.=.+...|..++.....+...|..-+-.+...|+.+..-+.+.+..+..=.
T Consensus 291 ~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~q 370 (775)
T PF10174_consen 291 RLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQ 370 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433333333322222222222222222222222222222223333333333333333311
Q ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCccccccc--HHHHHHHHH
Q 000499 517 LRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSS--AESIKNLQD 594 (1460)
Q Consensus 517 ~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS--~~sIk~LQd 594 (1460)
....-.-..+..|...|-...-+++.|.-.|+++...|.+=.. .+.....++.-.-...+.-+..+ ...+.+...
T Consensus 371 eE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~---ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker 447 (775)
T PF10174_consen 371 EEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDR---QLDEEKERLSSQADSSNEDEALETLEEALREKER 447 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccccccchHHHHHHHHHHHHHHHH
Confidence 1111111222333334444445555555555555555443211 12222222211000111111100 013333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHH-------HHHHHHHhhcCCCccchhhhHHHHHHHhh
Q 000499 595 EILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKH-------QAMVEQVESVSLNPENFGLSVKELQDENS 667 (1460)
Q Consensus 595 Ei~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~-------~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~ 667 (1460)
-+..|.+.....+.+ ..++-+.++.++..++..+..|...+ ..+.+.++.+-.+-....+-++-|+..+.
T Consensus 448 ~~e~l~e~r~~~e~e---~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lE 524 (775)
T PF10174_consen 448 LQERLEEQRERAEKE---RQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELE 524 (775)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHH
Confidence 334433332221111 12333444444444444444444433 34556666666666666788889999999
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 000499 668 KLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENS-------LSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAE 738 (1460)
Q Consensus 668 ~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~S-------LSdan~ELegLReK~K~LEesc~sL~~eKS~L~sE 738 (1460)
+.++.|.+....= .+++.-.++......||.. .+.+.+|+|-|+..++..|........++..|.++
T Consensus 525 k~rek~~kl~~ql----~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~Leke 598 (775)
T PF10174_consen 525 KKREKHEKLEKQL----EKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKE 598 (775)
T ss_pred HhhhHHHHHHHHH----HHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999888776432 1233323445556666664 45556778888888888887777777777777766
No 20
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.05 E-value=2.9e-11 Score=154.21 Aligned_cols=715 Identities=20% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHH
Q 000499 409 RLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMV 488 (1460)
Q Consensus 409 ~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ 488 (1460)
.|...+.+...+...+..+++.-...+..|...+...|..|.-|..+++....-=.-+|.....|..++-.|..+++...
T Consensus 8 ~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~ 87 (859)
T PF01576_consen 8 ELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAG 87 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555566666655555555555555556666556655555544444455554455555555555555444
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHH
Q 000499 489 QKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEV 568 (1460)
Q Consensus 489 ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev 568 (1460)
.....+..-....-.|+..|+..+.+.+ +.-+.++..|.+-|+.. +..|...|..+...-..++..+..|..++
T Consensus 88 ~~t~aq~E~~kkrE~El~~Lrr~LEe~~---~~~e~~~~~lrkkh~~~---~~eL~eqle~lqk~k~~lEK~k~~l~~e~ 161 (859)
T PF01576_consen 88 GATQAQIELNKKREAELAKLRRDLEEAN---LQHEATLAELRKKHQDA---VAELNEQLEQLQKQKAKLEKEKSQLEAEL 161 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4433333233455578888888887633 33355666666666544 44566677777766677899999999999
Q ss_pred HHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc
Q 000499 569 EKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESV 648 (1460)
Q Consensus 569 ~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l 648 (1460)
..+..++..+......+...++.+...+.-++......+..+. .|......+..++..|...+......+..+
T Consensus 162 ~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~-------el~~~k~kL~~E~~eL~~qLee~e~~~~~l 234 (859)
T PF01576_consen 162 DDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRN-------ELTEQKAKLQSENSELTRQLEEAESQLSQL 234 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888888888888888888888776555433332 222222233333333333332222222222
Q ss_pred CCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhhhHhhhhHHHHHHHHHHH
Q 000499 649 SLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLE----KNAVLENSLSDLNVELEGVRDKVKALEEV 724 (1460)
Q Consensus 649 ~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlE----kns~LE~SLSdan~ELegLReK~K~LEes 724 (1460)
. -.|..|-.+|.++..-++ ....|...+..+..++++||+.+-.-.++
T Consensus 235 ~----------------------------r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~ 286 (859)
T PF01576_consen 235 Q----------------------------REKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEA 286 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred H----------------------------HHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 1 123334444444333222 24455566666666666666666666666
Q ss_pred HHHHHHhhhhhhhhHHHHHhhhhHHHHH-HHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHH
Q 000499 725 CQNLLAEKSTLVAEKNSLFSQLQDVNEN-LKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERV 803 (1460)
Q Consensus 725 c~sL~~eKS~L~sEK~~LvSQLq~~~~~-l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~ 803 (1460)
-..|....+.+..|=..+-+.++..... +..|.+-.-.|...|.+++..++..+.++..|+-.+.-+..+...+..++.
T Consensus 287 k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe 366 (859)
T PF01576_consen 287 KSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELE 366 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555555555544444444443332 455555566667777777777777777777777776666666666666666
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHh
Q 000499 804 NLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEG 883 (1460)
Q Consensus 804 ~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~ 883 (1460)
...+....+...-+.+.+..+++..++..++.+.+.+-.+...+..-+..=...+.+ ....+..++.....|+
T Consensus 367 ~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee----~~e~~e~lere~k~L~--- 439 (859)
T PF01576_consen 367 KAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEE----LQEQLEELERENKQLQ--- 439 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHH---
Confidence 666666666666666666667777777766666655544444333222211111111 0111112222222111
Q ss_pred hhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 000499 884 LCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSLVDQIKVL 963 (1460)
Q Consensus 884 ~~r~~~~eeE~dk~~~AqieifiLq~~l~Dl~~kn~~ll~EcQk~~eas~~se~lIseLe~E~~~~q~e~~~L~~~~~~L 963 (1460)
.+++.+.+. +----+.+.+|+...=.|-.+..-+-.+-.=++.-+...+....-.++++..+-.++
T Consensus 440 --------~El~dl~~q---~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~--- 505 (859)
T PF01576_consen 440 --------DELEDLTSQ---LDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEI--- 505 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------Hhhccchhh---hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 122111110 001112222222222222222211111111111111111111111111111111111
Q ss_pred HHHHHHHHHHHhhcccCCCcchhhhhhhhHHHHHHHHhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000499 964 RVQLYQLLEILEIDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLAT 1043 (1460)
Q Consensus 964 r~gi~qv~k~L~i~~~~g~~d~~~~e~~l~~~l~~i~~~i~~l~~s~~~~q~enq~~~vEnsvL~t~L~ql~~e~~~L~~ 1043 (1460)
+-. .- -+++++= -.=....-.|..|+.++..=.....-.+-.+.=|=.=+..+..-+.....
T Consensus 506 -----------er~--l~----eKeeE~E-~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~ 567 (859)
T PF01576_consen 506 -----------ERE--LQ----EKEEEFE-ETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANR 567 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------HHH--HH----hhhhHHH-HHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 000 00 0011100 01111122233333333211111111111111111111111111111122
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhhhhhh
Q 000499 1044 ERNALAEEFRIQSEQFVVLQREFPKLTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKK 1123 (1460)
Q Consensus 1044 Ek~~L~~E~~~~s~q~l~Lq~e~~eLle~n~qL~~~~~~~~~ree~lk~E~~~l~~~l~~l~~s~~~lq~e~~~~~~e~~ 1123 (1460)
.+..+.+.+.....++--+|....+-.-...+++..+.....+-..|.+|++.++..+.....+.+.+..|...+.+...
T Consensus 568 ~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~ 647 (859)
T PF01576_consen 568 ANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLN 647 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333444444555555566555555556666676777777778888899999999999999999999999988888888
Q ss_pred hHHHHhhhhHHhhhhhhhhhhhHHHHHhhhccchhhhhhhHHHHHHHHHHHHHhHhh-------hhcchhhHHHHHHHhh
Q 000499 1124 SLMKKVLDLQEEKHSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSENLDK-------LGCINNELEEKVRLKD 1196 (1460)
Q Consensus 1124 sL~k~~~~l~e~~~~lEden~~~l~E~i~~~~ls~~~~~~~~Ek~~~l~~L~e~l~~-------L~~~~~eL~~~v~~l~ 1196 (1460)
.|......+...+..+|.+...+=.+.=-.-+-.-.....+.--...+..+..+|.. +-..+..|...|+.|.
T Consensus 648 ~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq 727 (859)
T PF01576_consen 648 ELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQ 727 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887754332211111222222222222334444444443 4445555555555555
Q ss_pred hhhhHHH
Q 000499 1197 GKLEDVQ 1203 (1460)
Q Consensus 1197 ~kle~~e 1203 (1460)
.++...+
T Consensus 728 ~rl~e~E 734 (859)
T PF01576_consen 728 ARLEEAE 734 (859)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 5554433
No 21
>PRK01156 chromosome segregation protein; Provisional
Probab=98.90 E-value=0.0012 Score=85.68 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 428 YQQCLEAISILEHKLARAEEEAQRL 452 (1460)
Q Consensus 428 ~qq~~~kI~~LE~els~sQEEv~RL 452 (1460)
+.+....+..++..+.....++..+
T Consensus 300 ~~~~~~~l~~l~~~l~~l~~~l~~~ 324 (895)
T PRK01156 300 YFKYKNDIENKKQILSNIDAEINKY 324 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555444444443333
No 22
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.82 E-value=0.0022 Score=83.40 Aligned_cols=186 Identities=24% Similarity=0.298 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHHH-----HhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHH
Q 000499 259 QYRQSLERLSNLESEVSH-----AREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQ----QCLDKLSNMEKN 329 (1460)
Q Consensus 259 qY~~slek~~~LE~~is~-----aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~Llqyk----qClE~Is~LE~~ 329 (1460)
+|++-++++-.-++++.. +|...+..++++...+...+.|...+.+++.+.+-+- ++. ...+++..+..+
T Consensus 469 eL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q-~~~~~~~~~~~kv~~~rk~ 547 (1317)
T KOG0612|consen 469 ELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQ-KKNDNAADSLEKVNSLRKQ 547 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHH
Confidence 555555555554544443 6677777777787777788888777777777766552 222 224555555555
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHH
Q 000499 330 ISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVER 409 (1460)
Q Consensus 330 ~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~ 409 (1460)
+-.+..+++...+-+.+...-.+.+...+ ++=++.-..++.++..+++.-.++...-..+...+..
T Consensus 548 le~~~~d~~~e~~~~~kl~~~~~e~~~~i--------------q~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~ 613 (1317)
T KOG0612|consen 548 LEEAELDMRAESEDAGKLRKHSKELSKQI--------------QQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEK 613 (1317)
T ss_pred HHHhhhhhhhhHHHHhhHhhhhhhhhHHH--------------HHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444444433332222222222222221 1222233456666666666666666655556666666
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000499 410 LKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGF 460 (1460)
Q Consensus 410 Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~ 460 (1460)
....-..+.+...++...+..+.+++..+...+...++ .+|.+.|...-.
T Consensus 614 ~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~~~~~ 663 (1317)
T KOG0612|consen 614 ERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQERISDS 663 (1317)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHH
Confidence 66666666666666777777776777666666666666 666665544333
No 23
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.81 E-value=7e-10 Score=141.85 Aligned_cols=424 Identities=23% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhH
Q 000499 417 LTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQ 496 (1460)
Q Consensus 417 L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~q 496 (1460)
+......+...+.....++..|+....+.+.++.-+..+++........+|..--.+...+..++...+.+........+
T Consensus 326 L~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~ 405 (859)
T PF01576_consen 326 LERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQR 405 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666666666666666666666666666665566555445555555555555555554445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhc
Q 000499 497 ELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENK 576 (1460)
Q Consensus 497 eL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~ 576 (1460)
+......+|..|+..+.+-.... ..+..-....+.++.-|..-+......+.+|+..+..|+.++..+...+.
T Consensus 406 e~r~~~te~~~Lk~~lee~~e~~-------e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~le 478 (859)
T PF01576_consen 406 EARELETELFKLKNELEELQEQL-------EELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLE 478 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554421111 12222222222333333333333333344444444444444444433333
Q ss_pred cCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHhhHHHHH--------------HHHHHHHHH
Q 000499 577 GLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRV-DQRNALQQEIYCLKEELN--------------ELNKKHQAM 641 (1460)
Q Consensus 577 ~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~-~ek~aLq~el~~lkee~~--------------~Ln~k~~~l 641 (1460)
-+....-..+..+..++.++..+|-...+-=.+..-.+ +-+..+|..|..+...++ +|...+..|
T Consensus 479 E~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eL 558 (859)
T PF01576_consen 479 EAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNEL 558 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222222233444555555555432221000000000 001122222222222211 111122222
Q ss_pred HHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHH
Q 000499 642 VEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKAL 721 (1460)
Q Consensus 642 ~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~L 721 (1460)
..++...+-...-....++.++...-.|......... ..+.+.+....++.-+..+..|++.+|......
T Consensus 559 e~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~----------~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a 628 (859)
T PF01576_consen 559 EIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQR----------AREELREQLAVSERRLRALQAELEELREALEQA 628 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223233322222333333333333322211111111 123455566777788888888888888887777
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH-------Hhhhh
Q 000499 722 EEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCL-------LLDNE 794 (1460)
Q Consensus 722 Eesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~-------~l~~e 794 (1460)
+-.+..+-.+...+..+=+.|-++-..+...-..|.-+.+.|+..|-+...+.+.+-.|.+-...... .....
T Consensus 629 ~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~ 708 (859)
T PF01576_consen 629 ERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDH 708 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 77777665555554443333333333322222233333333333333333333333333332222211 12222
Q ss_pred hhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHHHHhhhhhh
Q 000499 795 KSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQ 863 (1460)
Q Consensus 795 ~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~q~h~~~~k 863 (1460)
...+-..|.+|..||.-++.++..++...-. +...-+.++-..|.+|...|..|..+|..+.+
T Consensus 709 ~~~le~~k~~LE~q~keLq~rl~e~E~~~~~------~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k 771 (859)
T PF01576_consen 709 NQHLEKEKKALERQVKELQARLEEAEQSALK------GGKKQIAKLEARIRELEEELESEQRRRAEAQK 771 (859)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------ccccHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223355666666666666655554432211 11222333444555666666666666665543
No 24
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.75 E-value=0.005 Score=82.87 Aligned_cols=217 Identities=17% Similarity=0.268 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhh----chHhH--------
Q 000499 497 ELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGT----RNQSL-------- 564 (1460)
Q Consensus 497 eL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~----~k~~L-------- 564 (1460)
++.....+++..+.....-......+......+....-+.+.+++.+..++..+.+.+..+.. .+.+|
T Consensus 470 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~ 549 (1201)
T PF12128_consen 470 QLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNK 549 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCC
Confidence 334444445554444444444555555555555555555566666666666665554444332 22233
Q ss_pred ---HHHHHHHHH----HhccCcccccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHH
Q 000499 565 ---QEEVEKVKE----ENKGLNELNLSSA--ESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELN 635 (1460)
Q Consensus 565 ---~eev~~l~E----En~~L~e~n~SS~--~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln 635 (1460)
++.|-++-. ...+|+|+-.... .++=+++=-++.+. +.-.....++|.+++..+...+..+.
T Consensus 550 p~We~tIGKVid~eLL~r~dL~P~l~~~~~~dslyGl~LdL~~I~---------~pd~~~~ee~L~~~l~~~~~~l~~~~ 620 (1201)
T PF12128_consen 550 PGWEQTIGKVIDEELLYRTDLEPQLVEDSGSDSLYGLSLDLSAID---------VPDYAASEEELRERLEQAEDQLQSAE 620 (1201)
T ss_pred CcHHHHhHhhCCHHHhcCCCCCCeecCCCcccccceeEeehhhcC---------CchhhcChHHHHHHHHHHHHHHHHHH
Confidence 444444322 2347888754332 34545543333332 11122344566666666666666666
Q ss_pred HHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHH
Q 000499 636 KKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVR 715 (1460)
Q Consensus 636 ~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLR 715 (1460)
.+...+..++...+-..+.....+...+-.....+........+...+-.+... .+-+.-...+..+..+..++..+.
T Consensus 621 ~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~l~~~~ 698 (1201)
T PF12128_consen 621 ERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEE--AKEERKEQIEEQLNELEEELKQLK 698 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655444333333333333333344444444444444333332222 233445566666666666666666
Q ss_pred HHHHHHHHH
Q 000499 716 DKVKALEEV 724 (1460)
Q Consensus 716 eK~K~LEes 724 (1460)
...+.+.+-
T Consensus 699 ~e~~~~~~~ 707 (1201)
T PF12128_consen 699 QELEELLEE 707 (1201)
T ss_pred HHHHHHHHH
Confidence 655554443
No 25
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.75 E-value=0.0012 Score=81.57 Aligned_cols=148 Identities=23% Similarity=0.271 Sum_probs=108.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000499 536 SQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVD 615 (1460)
Q Consensus 536 SQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ 615 (1460)
...|+.....+|+.....+..+...-.+|..++...+.++..+.+.--.+...|..|+.++..++-.......+...-.+
T Consensus 286 ~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~ 365 (522)
T PF05701_consen 286 AKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKE 365 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhh
Confidence 44666667777777788888888888889999999999998888777777778999999999888777666555554445
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHH-HhHHHHHHH
Q 000499 616 QRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYE-RDRCEKVAL 683 (1460)
Q Consensus 616 ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s-~~~~EK~~L 683 (1460)
.-..+...+..+..+.+........+..++..+.-..+..+..++..+..+.....+.. .-.+|..++
T Consensus 366 ~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Al 434 (522)
T PF05701_consen 366 AMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALAL 434 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777788888888777777777777777777777788877777665444433 334444443
No 26
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.72 E-value=0.0007 Score=86.19 Aligned_cols=319 Identities=24% Similarity=0.257 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000499 546 ELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIY 625 (1460)
Q Consensus 546 Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~ 625 (1460)
++.-.+..+.++...|..|.++-..+++++.+|.-++-.. .+-.+|..++.....|+. ++...+..+.
T Consensus 258 Ds~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~-----tleseiiqlkqkl~dm~~-------erdtdr~kte 325 (1195)
T KOG4643|consen 258 DSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGA-----TLESEIIQLKQKLDDMRS-------ERDTDRHKTE 325 (1195)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccC-----ChHHHHHHHHHHHHHHHH-------hhhhHHHHHH
Confidence 3444566778888888889999888999888887776322 345567777776666544 5567777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCC-------CccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH--HHHHHHH
Q 000499 626 CLKEELNELNKKHQAMVEQVESVSL-------NPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEI--MEKLLEK 696 (1460)
Q Consensus 626 ~lkee~~~Ln~k~~~l~e~l~~l~~-------~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~--mekLlEk 696 (1460)
.+-++...|.-...+|--++..+++ .-.|.+.-+..|-.. --++-. ...-++...+..+|. .+.+.-|
T Consensus 326 eL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~-ralkll--LEnrrlt~tleelqsss~Ee~~SK 402 (1195)
T KOG4643|consen 326 ELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSD-RALKLL--LENRRLTGTLEELQSSSYEELISK 402 (1195)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhH-HHHHHH--HHhHHHHHHHHHHhhhhHHHHHHH
Confidence 7777777777766666666666655 122222222222220 001111 122345666666665 5667777
Q ss_pred HHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhh---hhHHH
Q 000499 697 NAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLF---DANAE 773 (1460)
Q Consensus 697 ns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slS---d~n~E 773 (1460)
...|++-=.++-.+.+-|-+++..+--...-|.+.--.|.-|++.|.-....++..++.=..++..+-..+| -+.++
T Consensus 403 ~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~e 482 (1195)
T KOG4643|consen 403 HLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAE 482 (1195)
T ss_pred HHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 777777656666666666666655555555555555667778888888888888877766666666655544 45678
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHH
Q 000499 774 VEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDA 853 (1460)
Q Consensus 774 lE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~ 853 (1460)
.+.++.+.|.+-.+++-=..+-+++.+.+..+..|+......+.-+..+..+|+....++..|...++.+|-.|--.
T Consensus 483 t~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t--- 559 (1195)
T KOG4643|consen 483 TEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT--- 559 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---
Confidence 99999999999999999999999999999999999999999999999999999999999999888777776544221
Q ss_pred HHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHHHhhHH
Q 000499 854 EKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQI 902 (1460)
Q Consensus 854 e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~~~Aqi 902 (1460)
| |...+-|.++.++..|..++++-++|=.
T Consensus 560 -~-------------------qn~~~LEq~~n~lE~~~~elkk~idaL~ 588 (1195)
T KOG4643|consen 560 -S-------------------QNGALLEQNNNDLELIHNELKKYIDALN 588 (1195)
T ss_pred -h-------------------HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 2 3445566777778888888888776633
No 27
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=0.0057 Score=79.54 Aligned_cols=113 Identities=20% Similarity=0.232 Sum_probs=61.1
Q ss_pred hhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHH
Q 000499 731 EKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLD 810 (1460)
Q Consensus 731 eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~ 810 (1460)
..--+.++...+-..+++-..++.+...+.+.|+..+-++..+++.|-..++++++..-- +..+...-..-+.
T Consensus 915 ~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E-------~~~~~~e~~~~~~ 987 (1293)
T KOG0996|consen 915 QLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAE-------LEKEYKEAEESLK 987 (1293)
T ss_pred HHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-------HHHHHHHHHHHHH
Confidence 333455555566666666666677777777777776666666666666666666544333 3333333333444
Q ss_pred HHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHh
Q 000499 811 IARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFS 850 (1460)
Q Consensus 811 ~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~s 850 (1460)
-+...+..+...|.+....+..+..++=.+..+++..+..
T Consensus 988 E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~e~~~~~ 1027 (1293)
T KOG0996|consen 988 EIKKELRDLKSELENIKKSENELKAERIDIENKLEAINGE 1027 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 4444555555555555555555555431144444444433
No 28
>PRK01156 chromosome segregation protein; Provisional
Probab=98.66 E-value=0.0065 Score=79.21 Aligned_cols=8 Identities=0% Similarity=-0.213 Sum_probs=4.0
Q ss_pred hhhhhhhh
Q 000499 208 EENEQLQH 215 (1460)
Q Consensus 208 ~~e~s~l~ 215 (1460)
||++..+.
T Consensus 137 Qg~~~~l~ 144 (895)
T PRK01156 137 QGEMDSLI 144 (895)
T ss_pred ccchHHHH
Confidence 55555444
No 29
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.65 E-value=0.0041 Score=79.64 Aligned_cols=99 Identities=22% Similarity=0.330 Sum_probs=68.0
Q ss_pred hHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 000499 658 SVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVA 737 (1460)
Q Consensus 658 ~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~s 737 (1460)
..+.+-..|..|.+.+.....|.+.|+.+++.+.--..+-+.||.+.++.-..=..++.-+++|.+
T Consensus 524 qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~a-------------- 589 (1195)
T KOG4643|consen 524 QYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALNA-------------- 589 (1195)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--------------
Confidence 445566778889999999999999999999987666888889998888876555555555555441
Q ss_pred hHHHHHhhhhHHHHHHHhhhhh--hhhhhhhhhhhHHHHHHHHHHH
Q 000499 738 EKNSLFSQLQDVNENLKKLSDE--NNFLVNSLFDANAEVEGLRAKS 781 (1460)
Q Consensus 738 EK~~LvSQLq~~~~~l~~L~Ek--ns~LE~slSd~n~ElE~lr~K~ 781 (1460)
++--.++|+++ |..+-.--++.+.-.+.+|+++
T Consensus 590 -----------lrrhke~LE~e~mnQql~~d~~~~kr~ie~Lr~~~ 624 (1195)
T KOG4643|consen 590 -----------LRRHKEKLEEEIMNQQLFEDPIPLKRDIEWLRRKE 624 (1195)
T ss_pred -----------HHHHHHHHHHHHhhhhhhhcCCchhhhHHHHHHHH
Confidence 22223344444 5555555556677777777773
No 30
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=0.0081 Score=78.20 Aligned_cols=164 Identities=20% Similarity=0.275 Sum_probs=104.2
Q ss_pred hhhhhHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----chhhHhhhHHHHHHHHHHH-
Q 000499 231 RMGKAEMEILTLK----NALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSK----GLSEQASIAEAEVQTLKEA- 301 (1460)
Q Consensus 231 R~~kAe~EI~~Lk----k~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~----~L~era~~ae~E~~sLk~~- 301 (1460)
|..-|+.|-..|- .+|.=|+.|.+....+-..+--+|+..=+.|..+|.... +|.+.+.+..++...-.+.
T Consensus 289 ~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~ 368 (1293)
T KOG0996|consen 289 RVKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKN 368 (1293)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHH
Confidence 4455667766664 467788888888865544444444443444444444332 2333333333322222111
Q ss_pred --HHHHHHHHHHHHH-HHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000499 302 --LARLETEREANIR-QYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRM 378 (1460)
Q Consensus 302 --la~Lq~Ekea~Ll-qykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~ 378 (1460)
.-+--.++.+-+- .+.+|..+...++.+-..-++..+.++..+.+++.+++..+.+...++.--+.+....++|-..
T Consensus 369 e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~e 448 (1293)
T KOG0996|consen 369 EAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTE 448 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHH
Confidence 1111122333333 5778888999999999999999999999999999999999988888887777777777888888
Q ss_pred HHHHHhhhhhhhHhHH
Q 000499 379 ISALEDKLLHSEEDSK 394 (1460)
Q Consensus 379 IS~LE~ki~~aee~~~ 394 (1460)
|+.|+.....++..+.
T Consensus 449 i~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 449 IEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888777655554444
No 31
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.61 E-value=0.0056 Score=76.11 Aligned_cols=520 Identities=21% Similarity=0.264 Sum_probs=256.8
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHH-------HH
Q 000499 234 KAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALAR-------LE 306 (1460)
Q Consensus 234 kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~-------Lq 306 (1460)
.+..=|.+.+++|..||=+-|.+-+-++..+.---+|=+..+- -...|.+ |+.+-++ -+
T Consensus 110 enrk~IEaqrKaIqELQf~NE~lSlKLee~i~en~dL~k~nna-TR~lCNl-------------LKeT~~rsaEK~~~yE 175 (786)
T PF05483_consen 110 ENRKIIEAQRKAIQELQFENEKLSLKLEEEIQENKDLRKENNA-TRHLCNL-------------LKETCQRSAEKMKKYE 175 (786)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhHHHHHHhhhH-HHHHHHH-------------HHHHHHHHHHHHHHHH
Confidence 5566689999999999988888777776666655555444331 1222322 2333322 24
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHh
Q 000499 307 TEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVK--YEECSRMISALED 384 (1460)
Q Consensus 307 ~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lq--yqQcLE~IS~LE~ 384 (1460)
.|++-..-.|. .+++-+.+....|+.|+ ..+|.+-.-++ .+.|++.|..|+.
T Consensus 176 ~EREET~qly~---------------------~l~~niekMi~aFEeLR-----~qAEn~r~EM~fKlKE~~~k~~~lee 229 (786)
T PF05483_consen 176 YEREETRQLYM---------------------DLNENIEKMIAAFEELR-----VQAENDRQEMHFKLKEDYEKFEDLEE 229 (786)
T ss_pred HHHHHHHHHHH---------------------HHhhhHHHHHHHHHHHH-----HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433332 33344444555555543 33444444443 4578888888877
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 000499 385 KLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLK 464 (1460)
Q Consensus 385 ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~ 464 (1460)
+. ..++.--+.+|.-|...+......+..+...++....++..|+..-...++-++..+.+-+++.+.|.
T Consensus 230 ey----------~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~ 299 (786)
T PF05483_consen 230 EY----------KKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELE 299 (786)
T ss_pred HH----------HHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Confidence 62 22233447778888888888888888888888888888888887766666666666555555555555
Q ss_pred hHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------ccH
Q 000499 465 GAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHS-------QSQ 537 (1460)
Q Consensus 465 ~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhS-------qSQ 537 (1460)
++=..++..+..--.|..+++.....+-...++ +-..++.+......-...+.+-.++...|+.+.. ...
T Consensus 300 ~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~e---Ke~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~e 376 (786)
T PF05483_consen 300 DIKQSLQESESTQKALEEDLQQATKTLIQLTEE---KEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNE 376 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 433333322222222233333333322211121 1222222222222222222333333333322211 123
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 000499 538 DELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQR 617 (1460)
Q Consensus 538 eE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek 617 (1460)
++++.|+.++++....|.+|-..++.=.-++..++.. |.+. + .|-|+-..+.-+.+.
T Consensus 377 d~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~---L~e~---q-----kll~ekk~~eki~E~------------ 433 (786)
T PF05483_consen 377 DQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKI---LAEK---Q-----KLLDEKKQFEKIAEE------------ 433 (786)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHH---HHHH---H-----HHHHHHHHHHHHHHH------------
Confidence 5556677777777777777654443332223222211 1000 0 111111111111111
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000499 618 NALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKN 697 (1460)
Q Consensus 618 ~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkn 697 (1460)
|+..-.++..-+....+..+.|..+|...-.+-.....
T Consensus 434 --lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~ysk---------------------------------------- 471 (786)
T PF05483_consen 434 --LQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSK---------------------------------------- 471 (786)
T ss_pred --HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHH----------------------------------------
Confidence 11111111111222222222222222111110000011
Q ss_pred HHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHH--------------HHHHHhhhhhhhhh
Q 000499 698 AVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDV--------------NENLKKLSDENNFL 763 (1460)
Q Consensus 698 s~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~--------------~~~l~~L~Ekns~L 763 (1460)
-+-++.++|+.-+.|-..|=..|.-|.-++-.++-|.....+.+-.. ....++|.+.++.|
T Consensus 472 -----QVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~L 546 (786)
T PF05483_consen 472 -----QVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQL 546 (786)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233344444333334444444444444444444444444433333 23345667777777
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHH
Q 000499 764 VNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQK 843 (1460)
Q Consensus 764 E~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~ 843 (1460)
=+-+..+..++...+..|++. +..-..+...+..+......|+..+...+.++++..+.- .+++..
T Consensus 547 rneles~~eel~~k~~Ev~~k---l~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk-----------~K~iee 612 (786)
T PF05483_consen 547 RNELESVKEELKQKGEEVKCK---LDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENK-----------NKNIEE 612 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-----------HhHHHH
Confidence 555555555554444333221 111112223345788888889998888888888866633 444444
Q ss_pred HHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHH
Q 000499 844 VEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKA 897 (1460)
Q Consensus 844 veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~ 897 (1460)
+.+-|..|.-+ .-.-.++++-|+..|+.|+++....++.|+++-|+.
T Consensus 613 LqqeNk~LKKk-------~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~ 659 (786)
T PF05483_consen 613 LQQENKALKKK-------ITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKY 659 (786)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44444444322 112245778899999999999999999999877653
No 32
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.58 E-value=0.0017 Score=79.85 Aligned_cols=92 Identities=21% Similarity=0.301 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000499 537 QDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQ 616 (1460)
Q Consensus 537 QeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~e 616 (1460)
++++..|..+++.+..-+++=...++.|+.++.+.+ -++..-|.+.+.|+.-|+...+.++-|..-..+|
T Consensus 370 k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~----------D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~E 439 (546)
T PF07888_consen 370 KDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEK----------DCNRVQLSENRRELQELKSSLRVAQKEKEQLQEE 439 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888777777777777776543 2223357788888888888888877766656666
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH
Q 000499 617 RNALQQEIYCLKEELNELNKKH 638 (1460)
Q Consensus 617 k~aLq~el~~lkee~~~Ln~k~ 638 (1460)
|..|-+.+++|...++.+-..+
T Consensus 440 kQeL~~yi~~Le~r~~~~~~~~ 461 (546)
T PF07888_consen 440 KQELLEYIERLEQRLDKVADEK 461 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh
Confidence 6666666666666666655443
No 33
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.57 E-value=0.00054 Score=84.13 Aligned_cols=195 Identities=23% Similarity=0.241 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000499 546 ELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIY 625 (1460)
Q Consensus 546 Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~ 625 (1460)
.+......+++.......++.++..++++.+++.++-.+|...+-.|..|++.+.....+.-.|.....-+..-|-..++
T Consensus 263 rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLa 342 (546)
T PF07888_consen 263 RLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLA 342 (546)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33334444555555566677777777777777777766666667777777777776665554444433333333322222
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000499 626 CLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLS 705 (1460)
Q Consensus 626 ~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLS 705 (1460)
...-.+..-..+.......+ .-..+.-+..|.+|+.+.+.+.+-......|...|-.+|- ..+
T Consensus 343 d~~l~lke~~~q~~qEk~~l---~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~--------------ke~ 405 (546)
T PF07888_consen 343 DASLELKEGRSQWAQEKQAL---QHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLG--------------KEK 405 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------Hhh
Confidence 22222211111111111110 0001112233333333333333333333333333322221 234
Q ss_pred hhh-HhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhh
Q 000499 706 DLN-VELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLS 757 (1460)
Q Consensus 706 dan-~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~ 757 (1460)
|.| +-|-+.|-.+.+|..+...+.-||-.|..||.-|.--+..+.++|+++.
T Consensus 406 D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~ 458 (546)
T PF07888_consen 406 DCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVA 458 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555 4677777778888889999999999999999999999999999888773
No 34
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.57 E-value=0.0069 Score=75.08 Aligned_cols=253 Identities=20% Similarity=0.230 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHH-Hhhh----------hhHHHHHH
Q 000499 433 EAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQ-KMGS----------QSQELTEK 501 (1460)
Q Consensus 433 ~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~e-kl~~----------~~qeL~eK 501 (1460)
.....++..+-+++.++.+|+.++ ...++++.+...--..+..|+.++..... ++.. ....+...
T Consensus 211 ~~~~~~~~~leeae~~l~~L~~e~----~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~ 286 (522)
T PF05701_consen 211 QDAEEWEKELEEAEEELEELKEEL----EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASA 286 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHH
Confidence 455667777888888888888877 33334443322222334555555555444 1110 01113333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHh-------hhchHhHHHHHHHHHHH
Q 000499 502 QKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDM-------GTRNQSLQEEVEKVKEE 574 (1460)
Q Consensus 502 ~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~l-------e~~k~~L~eev~~l~EE 574 (1460)
..|++..+..++. ...--+..+..+.+|..|+.+.+..+..+ ...-.+|..++..++-+
T Consensus 287 ~~ELe~ak~~L~~--------------~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~e 352 (522)
T PF05701_consen 287 KKELEEAKKELEK--------------AKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSE 352 (522)
T ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Confidence 3444444444433 33333333344555555555554444444 33445566666666555
Q ss_pred hccCccccc-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 000499 575 NKGLNELNL-------SSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVES 647 (1460)
Q Consensus 575 n~~L~e~n~-------SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~ 647 (1460)
+.......- .....+..+..|....|..-..... +-..+..++...+-.+.....++.+....+..
T Consensus 353 Lea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~-------E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ea 425 (522)
T PF05701_consen 353 LEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKE-------EVEKAKEEAEQTKAAIKTAEERLEAALKEAEA 425 (522)
T ss_pred HHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543322211 0111333333344333333333222 22244445555555555556666666665555
Q ss_pred cCCCccchhhhHHHHHHHhhhhHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHH
Q 000499 648 VSLNPENFGLSVKELQDENSKLKE-------VYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRD 716 (1460)
Q Consensus 648 l~~~~e~~~~~VkeLQ~~n~~LkE-------~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLRe 716 (1460)
.+..-.---..++.|++.-..-.. .+..-..|=..|..+-+..+.+..+- ...+...++..+.
T Consensus 426 aKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~~ka~e~ee~a~kk------va~A~aqve~ak~ 495 (522)
T PF05701_consen 426 AKASEALALAEIKALSESESSSRASDSESSSKVTLSLEEYESLSKKAEEAEELAEKK------VAAAMAQVEAAKA 495 (522)
T ss_pred HHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 544333334556666554432221 23334455556666666666655432 3455555555443
No 35
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.57 E-value=0.0041 Score=77.77 Aligned_cols=378 Identities=14% Similarity=0.140 Sum_probs=201.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhH
Q 000499 402 KAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLH 481 (1460)
Q Consensus 402 ~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~ 481 (1460)
+.+.+.+.|+..+..+++++......+......+-.++.++|-...+|-+...++.+....|.+++..++.+=..+..+.
T Consensus 117 ~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en 196 (1265)
T KOG0976|consen 117 RLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREK 196 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666777777777777777777777777777777777777665544444444
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhch
Q 000499 482 SELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRN 561 (1460)
Q Consensus 482 sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k 561 (1460)
-.+..+.++...-...-.++-.++..-+..-++-..+.++--+.++.|+- +.-.--++.+...+++.++
T Consensus 197 ~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp-----------~rk~~s~i~E~d~~lq~sa 265 (1265)
T KOG0976|consen 197 KALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTP-----------LRKTCSMIEEQDMDLQASA 265 (1265)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh-----------HhhhhHHHHHHHHHHHHHH
Confidence 33333333332111111122222222222222212222222222222221 1111222333344455555
Q ss_pred HhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhhhHHHHHHHHHhhHHH
Q 000499 562 QSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETI-----------GKLEAEVELRVDQRNALQQEIYCLKEE 630 (1460)
Q Consensus 562 ~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~-----------~kLe~Ev~~~~~ek~aLq~el~~lkee 630 (1460)
.-+.+.+..++--|..|..---.-+-.|+.+|.++..+|..- .-++.|+--+..++-+++.++...+..
T Consensus 266 k~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk 345 (1265)
T KOG0976|consen 266 KEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRK 345 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555566666655555553332223446888888888887433 245556666667777777777766666
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 000499 631 LNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVE 710 (1460)
Q Consensus 631 ~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~E 710 (1460)
.+.+..+...|+..=..+-.++.+++...+...+..++|.+.-.....-=+.|-...=.++-+-..+-.-.|.|+.+-..
T Consensus 346 ~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ek 425 (1265)
T KOG0976|consen 346 AEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEK 425 (1265)
T ss_pred hcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHH
Confidence 66666655555544443333344444444444444444444333222111111111100111112233334556666666
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhh---hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 000499 711 LEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKL---SDENNFLVNSLFDANAEVEGLRAKSKSLEDS 787 (1460)
Q Consensus 711 LegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L---~Ekns~LE~slSd~n~ElE~lr~K~k~lEes 787 (1460)
+|-+..-...++--|...+--|+.--.=|.--++|-..+-.++..+ .++--..|..|.-++++++--..|...+++-
T Consensus 426 ld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefmkEe 505 (1265)
T KOG0976|consen 426 LDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKEE 505 (1265)
T ss_pred HHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666676666666665555666677777666655433 4555666777888888888888887777766
Q ss_pred HHH
Q 000499 788 CLL 790 (1460)
Q Consensus 788 ~~~ 790 (1460)
.|-
T Consensus 506 iQe 508 (1265)
T KOG0976|consen 506 IQE 508 (1265)
T ss_pred HHH
Confidence 553
No 36
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=0.023 Score=73.28 Aligned_cols=140 Identities=21% Similarity=0.206 Sum_probs=103.5
Q ss_pred hhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 000499 703 SLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSK 782 (1460)
Q Consensus 703 SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k 782 (1460)
-|..+...++..+...+.=+...+-|..+-..+..|..+.=+|++.+......|..+...|+.++.++..+...+..+++
T Consensus 795 eik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~ 874 (1174)
T KOG0933|consen 795 EIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELK 874 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Confidence 33333344444444455556666677888888888899999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHH
Q 000499 783 SLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQ 842 (1460)
Q Consensus 783 ~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~ 842 (1460)
+.-.-......+-+.+........+....+....+-++.+++.+...+.++.+++++...
T Consensus 875 ~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~ 934 (1174)
T KOG0933|consen 875 DQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLK 934 (1174)
T ss_pred HHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHH
Confidence 887777777777777777777777777777777777777777776666666666555443
No 37
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.39 E-value=0.009 Score=75.36 Aligned_cols=205 Identities=21% Similarity=0.257 Sum_probs=110.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000499 618 NALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKN 697 (1460)
Q Consensus 618 ~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkn 697 (1460)
+...+++....+.+..+...++.|..+|+.+-...++-+.-.....++-..-...+... +..-+.+ -
T Consensus 282 E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~~eg~~~~~~~~~ee~~~~~~~ipEd----------~es~E~m---~ 348 (617)
T PF15070_consen 282 EMAHQELQEAQEHLEALSQQNQQLQAQLSLMALPGEGDGLESESEEEEAPQPMPSIPED----------LESREAM---V 348 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCCcccccccccccccCcCcccccc----------cccHHHH---H
Confidence 34556777778999999999999999998876655543221111111000000000000 0000001 2
Q ss_pred HHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhh------------hhHHHHHHHhhhhhhhhhhh
Q 000499 698 AVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQ------------LQDVNENLKKLSDENNFLVN 765 (1460)
Q Consensus 698 s~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQ------------Lq~~~~~l~~L~Ekns~LE~ 765 (1460)
+++-..+..+-.|=+.||..++.-..-|+.|......+..+....... -+.+...|++|..+
T Consensus 349 ~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va~~q~e~e~~a~~~~~~~dsV~~E~h~aLq~amekLq~~------ 422 (617)
T PF15070_consen 349 EFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVASAQKEPEAEAPAPGTGGDSVPGETHQALQEAMEKLQSR------ 422 (617)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccCcccCCCCCCccchHHHHHHHHHHHHH------
Confidence 456667778888888999999999999999988888877776655432 12222345555444
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHH
Q 000499 766 SLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVE 845 (1460)
Q Consensus 766 slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~ve 845 (1460)
+-|+=.|+-.++..+..||--|--+- .|..+.-.-|-.-+-.-..++.+|.+-++-..-+..+++-.--.+.
T Consensus 423 -f~~~~~e~adl~e~~e~le~~~~ql~-------~et~ti~eyi~ly~~qr~~~k~r~~e~~~~i~~l~~~~e~mk~kl~ 494 (617)
T PF15070_consen 423 -FMDLMEEKADLKERVEKLEHRFIQLS-------GETDTIGEYITLYQSQRAVLKQRHQEKEEYISRLAQDREEMKVKLL 494 (617)
T ss_pred -HHHHHHHHhhHHHHHHHHHHHHHHhc-------cCccchhhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555554443332 2223333333333444445566666655545555555544444444
Q ss_pred HHHH
Q 000499 846 ELQF 849 (1460)
Q Consensus 846 el~~ 849 (1460)
+|+.
T Consensus 495 elq~ 498 (617)
T PF15070_consen 495 ELQE 498 (617)
T ss_pred HHHH
Confidence 4443
No 38
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.38 E-value=5.5e-07 Score=113.95 Aligned_cols=64 Identities=22% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhcC---CCccchhhhHHHHHHHhhhhHHHHHHhHHHHHH
Q 000499 619 ALQQEIYCLKEELNELNKKHQAMVEQVESVS---LNPENFGLSVKELQDENSKLKEVYERDRCEKVA 682 (1460)
Q Consensus 619 aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~---~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~ 682 (1460)
.++.+++.+.-++..|..+..+...-+.+.+ ..|+.+...+..||..+..|.+.+.....+-..
T Consensus 302 ~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~ 368 (722)
T PF05557_consen 302 ELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRE 368 (722)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3444555555555555555543333333333 567788888888888888888777776655443
No 39
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.33 E-value=0.055 Score=74.27 Aligned_cols=640 Identities=19% Similarity=0.238 Sum_probs=307.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 234 KAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANI 313 (1460)
Q Consensus 234 kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~L 313 (1460)
+...|...+=+.++.....|..++-.....-.++..++..+.+....+..|...+..|..- +.+..+......+.....
T Consensus 276 r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~ky-leL~ee~lr~q~ei~~l~ 354 (1486)
T PRK04863 276 RHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDH-LNLVQTALRQQEKIERYQ 354 (1486)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3455666666666777788888888777777777777777777777777776655544432 223333333344444444
Q ss_pred HHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHH-----------HH---
Q 000499 314 RQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVK---YEE-----------CS--- 376 (1460)
Q Consensus 314 lqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lq---yqQ-----------cL--- 376 (1460)
-.+..+.+++...+..+..+.+.......++..++.++..++..+..+....+...-+ |++ |=
T Consensus 355 ~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~ 434 (1486)
T PRK04863 355 ADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPD 434 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5555566666666666666666666666666666666666666666554433332222 222 20
Q ss_pred -------HHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh----------------------HHHHHHHHHHH
Q 000499 377 -------RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGK----------------------LTEEKEALALQ 427 (1460)
Q Consensus 377 -------E~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~----------------------L~eekeal~l~ 427 (1460)
..+..+..++...+..+..+..+...++...+.+.+.... -...-..+..+
T Consensus 435 ~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~ 514 (1486)
T PRK04863 435 LTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQ 514 (1486)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 2333333333333333333333333333333333322111 11122225556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 000499 428 YQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGR 507 (1460)
Q Consensus 428 ~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~ 507 (1460)
..++..++..|+.-+.++ ..+.||..+.......--+.+.. |+.--.....+.+.+.+............+...+.
T Consensus 515 ~~~~~~~~~~l~~~~~~q-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~q 590 (1486)
T PRK04863 515 LQQLRMRLSELEQRLRQQ-QRAERLLAEFCKRLGKNLDDEDE---LEQLQEELEARLESLSESVSEARERRMALRQQLEQ 590 (1486)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888887766544 45566666654422221111111 22112222333333333333333333333333334
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccc
Q 000499 508 LWTCIQEE---RLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLS 584 (1460)
Q Consensus 508 Lq~slq~E---~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~S 584 (1460)
|...++.- .-.+..+-.+|..|.--.-...+....+..-.+........+...+..++..+..+.+++..|.-.+-+
T Consensus 591 L~~~i~~l~~~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l~~~~~g 670 (1486)
T PRK04863 591 LQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQPGGS 670 (1486)
T ss_pred HHHHHHHHHHhChHHHhhHHHHHHHHHhcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Confidence 44444332 223555555554443222223444444444444444443333333333333333333332222111111
Q ss_pred c---------------------------------HH-------HHHHHHHHHHHHHHH----------------------
Q 000499 585 S---------------------------------AE-------SIKNLQDEILSLRET---------------------- 602 (1460)
Q Consensus 585 S---------------------------------~~-------sIk~LQdEi~~LkE~---------------------- 602 (1460)
. .. .+.++.+=+..+...
T Consensus 671 ~~~~l~~~~~~~~Gvlvsel~~~v~~~~~~~~~A~lg~~~~~iVv~d~~~A~~ai~~L~~~p~d~~li~~~~~~~~~~~~ 750 (1486)
T PRK04863 671 EDPRLNALAERFGGVLLSEIYDDVSLEDAPYFSALYGPARHAIVVPDLSDAAEQLAGLEDCPEDLYLIEGDPDSFDDSVF 750 (1486)
T ss_pred ccHHHHHHHHhcCCeehhHhhhccCcchHHHHHHHHHhhhCeEEeCCHHHHHHHHHhccCCccceeeecCChhHHhccCc
Confidence 1 00 111221111111100
Q ss_pred -HHHHHHHHHHhhh-----------------------------hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh---hc-
Q 000499 603 -IGKLEAEVELRVD-----------------------------QRNALQQEIYCLKEELNELNKKHQAMVEQVE---SV- 648 (1460)
Q Consensus 603 -~~kLe~Ev~~~~~-----------------------------ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~---~l- 648 (1460)
-+-++..|..++. |++.+...++..-.+..++.+-|+++-.=|. ++
T Consensus 751 ~~~~~~~~v~~~~~~~~~r~s~~p~~p~~gr~are~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 830 (1486)
T PRK04863 751 SVEELEKAVVVKIADRQWRYSRFPEVPLFGRAAREKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVA 830 (1486)
T ss_pred cHHHhcCCeeeeecchhhhhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCcchh
Confidence 0012222222222 3344444444555555555555544432111 11
Q ss_pred -CCCccchhhhHHHHHHHhhhhHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHH
Q 000499 649 -SLNPENFGLSVKELQDENSKLKEVYERDRCEK-------VALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKA 720 (1460)
Q Consensus 649 -~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK-------~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~ 720 (1460)
..+|+. -++.++..-..+......+...- ..+-..++-+.+|.-.-.+|.- -.+..+++.+++.+..
T Consensus 831 f~~~pe~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~--~~~~~~~~~~~~~~~~ 905 (1486)
T PRK04863 831 FEADPEA---ELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLAD--ETLADRVEEIREQLDE 905 (1486)
T ss_pred cCCCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcCC--ccHHHHHHHHHHHHHH
Confidence 223332 33444444444444444444333 3333444445555555444433 1256678888888888
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH----------
Q 000499 721 LEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLL---------- 790 (1460)
Q Consensus 721 LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~---------- 790 (1460)
.+++-.. ..+-..-+.+|+..-..|..-.+.+..|...|..+......+..++-.|.+-++-
T Consensus 906 ~~~a~~y--------~~~~~~~L~qLE~~l~~L~~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~ 977 (1486)
T PRK04863 906 AEEAKRF--------VQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAA 977 (1486)
T ss_pred HHHHHHH--------HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 8887754 3455556667777777777777888888888888888888888888877766542
Q ss_pred -hhhhhhhhH----HhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHH---------------h
Q 000499 791 -LDNEKSCLI----TERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQF---------------S 850 (1460)
Q Consensus 791 -l~~e~s~l~----~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~---------------s 850 (1460)
...+.+.+. .+...+..+.....+.++..+++|+.....+..++.-.+...+.+.+... .
T Consensus 978 ~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~ 1057 (1486)
T PRK04863 978 EMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEER 1057 (1486)
T ss_pred hHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHH
Confidence 112333332 33444444444444445555555554444444444443333333333222 2
Q ss_pred HHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhhhH
Q 000499 851 LDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYE 891 (1460)
Q Consensus 851 L~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~~e 891 (1460)
+.+.+.+.....+-+..+-+.||+++.+.+.+.....+.+.
T Consensus 1058 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~ 1098 (1486)
T PRK04863 1058 ARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLR 1098 (1486)
T ss_pred HHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344555555666666677777776655555544444443
No 40
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.31 E-value=2.3e-06 Score=108.45 Aligned_cols=176 Identities=24% Similarity=0.323 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000499 537 QDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQ 616 (1460)
Q Consensus 537 QeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~e 616 (1460)
|.+.-.|..++..+.-.+..++....+|+.++..+..+ |.+++..+..++.....|+.-+.+-+.|
T Consensus 349 q~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~--------------~~~l~~~~~~~~~~~~RLerq~~L~~kE 414 (722)
T PF05557_consen 349 QQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKE--------------IEELEASLEALKKLIRRLERQKALATKE 414 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444322 2233333444555555555555555555
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH------HHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHH
Q 000499 617 RNALQQEIYCLKEELNELNKKH------QAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIM 690 (1460)
Q Consensus 617 k~aLq~el~~lkee~~~Ln~k~------~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~m 690 (1460)
.+.|..-+.....+....+... ..+.+-+..+.-...-+...|+.+.......+..+.....+-.++-.+...-
T Consensus 415 ~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~ 494 (722)
T PF05557_consen 415 RDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSN 494 (722)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred HHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhc
Confidence 5555554433333322222110 0111111111111111222344444444444444444443333333333222
Q ss_pred H----HHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHH
Q 000499 691 E----KLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQ 726 (1460)
Q Consensus 691 e----kLlEkns~LE~SLSdan~ELegLReK~K~LEesc~ 726 (1460)
+ .+.+++.-|...+..+..+++.|+..+..||.--.
T Consensus 495 ~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~ 534 (722)
T PF05557_consen 495 DRSLSSLSEELNELQKEIEELERENERLRQELEELESELE 534 (722)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 24555555666666666666666666666664433
No 41
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.20 E-value=0.00061 Score=76.20 Aligned_cols=196 Identities=28% Similarity=0.372 Sum_probs=132.7
Q ss_pred HHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 000499 275 SHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTL 354 (1460)
Q Consensus 275 s~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~L 354 (1460)
..++..+.....++..++.++.+|...+..++.+.+.+--.+..-..++...+.....++.-.+.+..|......++..|
T Consensus 18 ~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~l 97 (237)
T PF00261_consen 18 EEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEEL 97 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444455678889999999999999999999988888888889999999999999888899999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000499 355 KLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEA 434 (1460)
Q Consensus 355 Kqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~k 434 (1460)
...+.....-.+.+--.|..+-.++..++..+..+++ +++.++..+..|...+..+.....+
T Consensus 98 E~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEe-------R~e~~E~ki~eLE~el~~~~~~lk~----------- 159 (237)
T PF00261_consen 98 EQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEE-------RAEAAESKIKELEEELKSVGNNLKS----------- 159 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhchhHHHHHHHHHHHHHHHHH-----------
Confidence 9999888877777777788777777777777555554 3444455555555554443333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHh
Q 000499 435 ISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKM 491 (1460)
Q Consensus 435 I~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl 491 (1460)
||....++..-...+...|..+..+|+.+|.+....|.....|....+.|...+
T Consensus 160 ---lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL 213 (237)
T PF00261_consen 160 ---LEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDEL 213 (237)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444455555555555555555555555554444444444
No 42
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.15 E-value=0.087 Score=69.06 Aligned_cols=147 Identities=18% Similarity=0.275 Sum_probs=104.3
Q ss_pred HHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhH-HHHHHHH
Q 000499 322 KLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDS-KRINKVA 400 (1460)
Q Consensus 322 ~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~-~~ln~~~ 400 (1460)
+++..|.++...-.++..-.+.+..|..-+..++.+...+.++.-..--.|++-=..+..++..|.+++... ..++.+.
T Consensus 317 k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~ 396 (1074)
T KOG0250|consen 317 KLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSEL 396 (1074)
T ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 445555555555556665555555566666666655555554443333333333356677888888888888 7888889
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHH
Q 000499 401 DKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEE 468 (1460)
Q Consensus 401 e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~ 468 (1460)
...++++..|++++.++++...++...++.+..++...+.++.+-+..+..++.-|+.-...|+++..
T Consensus 397 ~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 397 EERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998888888888777777777666666655555544
No 43
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.14 E-value=0.12 Score=70.19 Aligned_cols=242 Identities=20% Similarity=0.299 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHH
Q 000499 542 SLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRV-DQRNAL 620 (1460)
Q Consensus 542 ~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~-~ek~aL 620 (1460)
.|..+++.+...|.........++..+..+...+..+...-.....-++..+..+..++.....++.+....+ ..+..+
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 683 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQI 683 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666665555555544444333333455555556666655555555555444 344566
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhc----CCCc-cchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH-H-HHH
Q 000499 621 QQEIYCLKEELNELNKKHQAMVEQVESV----SLNP-ENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEI-M-EKL 693 (1460)
Q Consensus 621 q~el~~lkee~~~Ln~k~~~l~e~l~~l----~~~~-e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~-m-ekL 693 (1460)
+..+..+...+..+......+...+..- .... ...+....++......+.........+-..-+..++. + .+|
T Consensus 684 ~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL 763 (1201)
T PF12128_consen 684 EEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQEL 763 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665554444322111 0000 0112222222222222222222222221111111111 0 011
Q ss_pred HHH------HHHHhhhhhhhhHhh---hhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhh
Q 000499 694 LEK------NAVLENSLSDLNVEL---EGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLV 764 (1460)
Q Consensus 694 lEk------ns~LE~SLSdan~EL---egLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE 764 (1460)
..+ ..-+++-+..++.+| +.-|.++..-+.+++..=.....+..++..|..++..++..+..+..+...+.
T Consensus 764 ~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 843 (1201)
T PF12128_consen 764 AGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQ 843 (1201)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 112222222222222 22233344444444444444455666777777777777777776666665555
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 000499 765 NSLFDANAEVEGLRAKSKS 783 (1460)
Q Consensus 765 ~slSd~n~ElE~lr~K~k~ 783 (1460)
..+....++++.-+..++.
T Consensus 844 ~~~~~~~~~le~~~~~~~~ 862 (1201)
T PF12128_consen 844 KEVKQRRKELEEELKALEE 862 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5554444444444443333
No 44
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.12 E-value=0.1 Score=68.87 Aligned_cols=58 Identities=31% Similarity=0.321 Sum_probs=46.2
Q ss_pred HHHHHH---HHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHH
Q 000499 692 KLLEKN---AVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDV 749 (1460)
Q Consensus 692 kLlEkn---s~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~ 749 (1460)
+|+++- --+++.+...+.+++-||.-++.-.++-+-+...+.-+.++.-.|.++|+..
T Consensus 708 ~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe 768 (1317)
T KOG0612|consen 708 KLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQE 768 (1317)
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 455552 3578888889999999998888888888888888888888888888888875
No 45
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=98.11 E-value=1.1e-06 Score=111.08 Aligned_cols=420 Identities=22% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000499 437 ILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEER 516 (1460)
Q Consensus 437 ~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~ 516 (1460)
+++......-+.+.++..+-+...++..+++.....|..++..|+.+.+.+...+...+ .+..+
T Consensus 169 ~~~~~~~~~~~~l~~~~~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~--------------~~~~~-- 232 (713)
T PF05622_consen 169 DLDSQSRRMYEELSRLVAERDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQLE--------------GSSEE-- 232 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCC--------------CCCCC--
Confidence 34444445556677777776666666666655555555555555555444433331111 11111
Q ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHH
Q 000499 517 LRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEI 596 (1460)
Q Consensus 517 ~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi 596 (1460)
.-..+..-+...+.+++.|..++..+...+.+....-..++.+|..++.+|..|.-..- ..+.|+||+
T Consensus 233 --------~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~----~a~~LrDEl 300 (713)
T PF05622_consen 233 --------PSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAR----EARALRDEL 300 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhH
Confidence 11122223444566777788888777767777777777778888888888877766533 678999999
Q ss_pred HHHHHHHH---HHHHHHHHhh---hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhH
Q 000499 597 LSLRETIG---KLEAEVELRV---DQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLK 670 (1460)
Q Consensus 597 ~~LkE~~~---kLe~Ev~~~~---~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~Lk 670 (1460)
..|++.-. +++.+|.... .+-..|...+..+++....+......+++++...+ +++..+..+...+..|+
T Consensus 301 D~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~----~~~~qle~~k~qi~eLe 376 (713)
T PF05622_consen 301 DELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKAR----ALKSQLEEYKKQIQELE 376 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHH
Confidence 99997554 5666666442 33333333333333333333333344444443321 23444444444444444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhh-----hhhhhhHHHHHhh
Q 000499 671 EVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEK-----STLVAEKNSLFSQ 745 (1460)
Q Consensus 671 E~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eK-----S~L~sEK~~LvSQ 745 (1460)
........+...+. ..+..|.+++.-|+..-..+..+.+.||+....|+ |....... +.....-.+|...
T Consensus 377 ~~l~~~~~~~~~l~---~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~--~~~~~~~~l~~~~~~~~~~~~~l~~E 451 (713)
T PF05622_consen 377 QKLSEESRRADKLE---FENKQLEEKLEALEEEKERLQEERDSLRETNEELE--CSQAQQEQLSQSGEESSSSGDNLSAE 451 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hccccccccccccccccccccchhhh
Confidence 44433333322221 12334555555555555555666667776666654 22221110 1222334445555
Q ss_pred hhH--HHHHHHhhhhhhhhhhhhhhhh-HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHH
Q 000499 746 LQD--VNENLKKLSDENNFLVNSLFDA-NAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKS 822 (1460)
Q Consensus 746 Lq~--~~~~l~~L~Ekns~LE~slSd~-n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~ 822 (1460)
+.. +..++..|...|..|-...... +..+..+...+.+....+..+..++.........|.+|++.++..+......
T Consensus 452 l~~~~l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l~~~~~~ 531 (713)
T PF05622_consen 452 LNPAELRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKSLQEQGSK 531 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 442 3445556666666553222222 1112223333333333333333333333344445555555555544333222
Q ss_pred HHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHHHHhhh----hhhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHH
Q 000499 823 YAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHAS----FVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKA 897 (1460)
Q Consensus 823 ~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~q~h~~----~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~ 897 (1460)
-.+ ...+..+.+..+.++.+.+..+-..++.... ........+.+|+..+..-.++.+-++..|...++|+
T Consensus 532 ~~d----~~~lk~~le~~~~~l~e~~~e~~~~~~~le~l~~~~~~~~~~ki~~Le~~L~~k~~e~~~~eer~k~~leka 606 (713)
T PF05622_consen 532 SED----SSELKQKLEEHLEKLRELKDELQKKREQLEELEQELNQSLSQKIEELEEALQKKEEEMRAMEERYKKYLEKA 606 (713)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred ccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Confidence 221 1222333344444444444333332222211 1222255678888888777777777777776666554
No 46
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.07 E-value=0.12 Score=67.78 Aligned_cols=256 Identities=16% Similarity=0.246 Sum_probs=148.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Q 000499 243 KNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIR-----QYQ 317 (1460)
Q Consensus 243 kk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~Ll-----qyk 317 (1460)
...+.-.-+=.+.+.-.-.+-.+.+..|+++|..+++....+. .++.+.+.+-+|.++.-=+.+ ||+
T Consensus 213 ~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~--------~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~ 284 (1074)
T KOG0250|consen 213 TESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLE--------QLEDLKENLEQLKAKMAWAWVNEVERQLN 284 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444445555566666666666665433322 355666666667766555555 889
Q ss_pred HHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHH
Q 000499 318 QCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRIN 397 (1460)
Q Consensus 318 qClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln 397 (1460)
-|.+.|...+++....++...........+..+.......++.+..|-++---..+.--.....+-.++..+++.....-
T Consensus 285 ~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~ 364 (1074)
T KOG0250|consen 285 NQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIE 364 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888887777777776666666666666444333211111111222222333333333333332
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHh
Q 000499 398 KVADKAESEVERLKQALGKLTEEK-EALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERS 476 (1460)
Q Consensus 398 ~~~e~~e~ev~~Lk~~l~~L~eek-eal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~ 476 (1460)
..+..+...++.+++.|..+++.. ..+..+..+..+++..|..++-..++.+++|..+.+....++...++.
T Consensus 365 n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee------- 437 (1074)
T KOG0250|consen 365 NSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEE------- 437 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------
Confidence 334445555666666666666555 666677777777777777777777777777777776666666554433
Q ss_pred hHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 477 NQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFV 520 (1460)
Q Consensus 477 ~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~ 520 (1460)
...+...+....+.+.....++..|....-+-...|=
T Consensus 438 -------~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG 474 (1074)
T KOG0250|consen 438 -------KEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFG 474 (1074)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc
Confidence 3334444444455566666666666666666655554
No 47
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.03 E-value=0.0016 Score=72.84 Aligned_cols=197 Identities=25% Similarity=0.341 Sum_probs=147.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHH
Q 000499 229 SERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETE 308 (1460)
Q Consensus 229 sER~~kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~E 308 (1460)
..|+..|+.||..|+.-|..|..+=+.+--.+.....|+.+++..........+.|..|....+.-+..|...+.....-
T Consensus 28 ~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~ 107 (237)
T PF00261_consen 28 EKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRR 107 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999998899999999888888888
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000499 309 REANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLH 388 (1460)
Q Consensus 309 kea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~ 388 (1460)
.+.+--.|..+.-++..++..+..+.+-+...-.++...+.++..+.+.+-.+.. .-.+..++...++.+|..
T Consensus 108 ~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~-------~~~~~~~re~~~e~~i~~ 180 (237)
T PF00261_consen 108 AEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEA-------SEEKASEREDEYEEKIRD 180 (237)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhh-------hhhhhhHHHHHHHHHHHH
Confidence 8888888888888888888888777766666655555555555555555554432 122233455666666666
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000499 389 SEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCL 432 (1460)
Q Consensus 389 aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~ 432 (1460)
+...+...-.+++.++..+..|...|..|..+.......|..+.
T Consensus 181 L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~ 224 (237)
T PF00261_consen 181 LEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQ 224 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666655555555544444443
No 48
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.03 E-value=0.013 Score=72.38 Aligned_cols=322 Identities=20% Similarity=0.275 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhchhhH--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhH
Q 000499 263 SLERLSNLESEVSHAREDSKGLSEQ--------ASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAE 334 (1460)
Q Consensus 263 slek~~~LE~~is~aQ~~~~~L~er--------a~~ae~E~~sLk~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aq 334 (1460)
-++|.--||.|=+.++-|+.-|... ..+-+.|+.++.-.+..-..++......+..|.+-+..|..++..++
T Consensus 54 YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~ 133 (546)
T KOG0977|consen 54 YIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAE 133 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4889999999999999998877654 33557788888888877777777777777777777777777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 000499 335 ADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQAL 414 (1460)
Q Consensus 335 eeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l 414 (1460)
..+.+..+.+ .....-++.++++-... ...|..|| +++.+|..+..++...+..+++.+
T Consensus 134 k~~~~~re~~-------~~~~~~l~~leAe~~~~-------krr~~~le-------~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 134 KERRGAREKL-------DDYLSRLSELEAEINTL-------KRRIKALE-------DELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHhhhHHHH-------HHHhhhhhhhhhHHHHH-------HHHHHHHH-------HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 6666533322 22222222222221111 12222222 223333333444444454444443
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhh
Q 000499 415 GKLTEEKEALALQYQQCLEAISILEHKLARA-EEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGS 493 (1460)
Q Consensus 415 ~~L~eekeal~l~~qq~~~kI~~LE~els~s-QEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~ 493 (1460)
.+=.--.-..+.+.+.+++.|.-+...+++- .++......+.-..+.. .=-..|-.++..+..+-+.......
T Consensus 193 d~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~-----~F~~eL~~Ai~eiRaqye~~~~~nR- 266 (546)
T KOG0977|consen 193 DDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNRE-----YFKNELALAIREIRAQYEAISRQNR- 266 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchH-----HHHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 3333333444555555555555555555432 22222222332100000 0001244445555555555544441
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHH
Q 000499 494 QSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKE 573 (1460)
Q Consensus 494 ~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~E 573 (1460)
++|+ ... ..+..++.++-...........||+.++...|..+..+|.+++.++.+|...|..+.-
T Consensus 267 ---------~diE---~~Y---~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ 331 (546)
T KOG0977|consen 267 ---------KDIE---SWY---KRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEY 331 (546)
T ss_pred ---------HHHH---HHH---HHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHh
Confidence 1111 011 1112222222222223334457999999999999999999999999999999999843
Q ss_pred HhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHH
Q 000499 574 ENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKE 629 (1460)
Q Consensus 574 En~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lke 629 (1460)
-|.+-.-+...++-....++-.+++.|..+-.|+.-=+|=|-+|.-||+.-+.
T Consensus 332 ---ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRk 384 (546)
T KOG0977|consen 332 ---QLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRK 384 (546)
T ss_pred ---hhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHH
Confidence 34555556667899999999999999999988887555666666666644333
No 49
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=98.03 E-value=0.13 Score=66.63 Aligned_cols=587 Identities=19% Similarity=0.184 Sum_probs=289.3
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000499 286 EQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLS-NMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAE 364 (1460)
Q Consensus 286 era~~ae~E~~sLk~~la~Lq~Ekea~LlqykqClE~Is-~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~E 364 (1460)
+|++-.+..++.|+..|.....|+|.-+. ..+-+++ ..++... ..+.++..+.+.++...+|
T Consensus 45 ~r~~hld~aLkec~~qlr~~ree~eq~i~---~~~~~~s~e~e~~~~--------------~le~~l~e~~~~l~~~~~e 107 (769)
T PF05911_consen 45 DRVSHLDGALKECMRQLRQVREEQEQKIH---EAVAKKSKEWEKIKS--------------ELEAKLAELSKRLAESAAE 107 (769)
T ss_pred HHhhhhhHHHHHHHHHHHHhhHHHHHHHH---HHHHHHhHHHHHHHH--------------HHHHHHHHHHHHHHHHHhh
Confidence 34444566777777777777777665431 0000000 0111111 2333444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--------------HHHHHHHHH
Q 000499 365 KEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEK--------------EALALQYQQ 430 (1460)
Q Consensus 365 KEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eek--------------eal~l~~qq 430 (1460)
..+..--.+.=-.+|..|...-..|+.+..-+..+++-++.+...|+-++.-+.++. ++..-|.-+
T Consensus 108 ~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle 187 (769)
T PF05911_consen 108 NSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLE 187 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 443322222222567777777777777777777777766666666666655444443 335566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHhHHh--------hhhh--------HHHHHhHHHHhhHhhHHHH
Q 000499 431 CLEAISILEHKLARAEEEAQR----------LHSELDNGFA--------KLKG--------AEEKCLLLERSNQTLHSEL 484 (1460)
Q Consensus 431 ~~~kI~~LE~els~sQEEv~R----------L~~Ei~~~~~--------kL~~--------lE~~~~~LE~~~q~L~sE~ 484 (1460)
.+.||..||-+=.+.+.-+++ |+.|++..-. +... .......-...+..|-..+
T Consensus 188 ~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 267 (769)
T PF05911_consen 188 SVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPSRPSSPHDFSPQNPQKRSKESEFLTERL 267 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCCcccccccccccccccchhhhHHHHHHH
Confidence 889999999887776655443 6666655411 0000 0011111123345556666
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HH------HHhhhccH
Q 000499 485 ESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQ---------------------TL------QHLHSQSQ 537 (1460)
Q Consensus 485 e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~---------------------~L------q~LhSqSQ 537 (1460)
..+.+.+.++-+-|..+..|++.-+...-+...|....|.-+. .. ..-+|++-
T Consensus 268 ~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql~~~~~~~~e~~~s~~~~~~~s~~s~se~~~dd~~s~s~ 347 (769)
T PF05911_consen 268 QAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQLKSSGQVSMELSSSQNTSNPPSLTSMSEDGNDDEGSCSD 347 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCchhcccccCCCCCCcccc
Confidence 6677777778888889999999999999999888888888881 00 00111121
Q ss_pred HHHHHHHHHHHHHHH-HH------HHhhhchHhHHHH---HHHHHHHhc-cCcccccc----------------------
Q 000499 538 DELRSLAAELQNRAQ-IL------KDMGTRNQSLQEE---VEKVKEENK-GLNELNLS---------------------- 584 (1460)
Q Consensus 538 eE~~~L~~Ei~~~~~-~L------~~le~~k~~L~ee---v~~l~EEn~-~L~e~n~S---------------------- 584 (1460)
-=..+|..|+..... +. .....+.-+|+++ |.++--=.. +-.+-..+
T Consensus 348 SWAsaLiseldqfk~~k~~~~~~~~~~~~~~i~LMDDFlEmEkLA~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (769)
T PF05911_consen 348 SWASALISELDQFKNEKVISRSSSKTISSSDIDLMDDFLEMEKLAALSRDSSSPSSCSSSEVDSDSSVTLESSSKRESVL 427 (769)
T ss_pred hhHHHHhchHHHhccccccccccccCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCccccccccccccccccccccc
Confidence 122456555554311 11 0111123344432 333211000 00000000
Q ss_pred --------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcC-
Q 000499 585 --------------SAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVS- 649 (1460)
Q Consensus 585 --------------S~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~- 649 (1460)
+..-.-..+.++...+.+.+.++..++--...... .-.+... ......+.+.+....
T Consensus 428 ~~~~~~~~~~~wLqsv~k~v~~q~~~s~i~~ILedI~~al~~~~~~~~~---~~~~~~~-----~~~~~sL~e~~~s~~~ 499 (769)
T PF05911_consen 428 ESDKLSDRIPEWLQSVLKLVLEQKEVSKISEILEDIEIALDSINNSSNC---DDDSEEY-----ESMEASLVEESKSMIE 499 (769)
T ss_pred cchhhcccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccccc---ccccchh-----hhhhhhHHHHHHHHHh
Confidence 00011112233333333333332222210000000 0000000 000011222222221
Q ss_pred --CCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHH
Q 000499 650 --LNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQN 727 (1460)
Q Consensus 650 --~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~s 727 (1460)
-++......|-+|-..-..+--+|.-.-..|+.+-...+...-.+++.-..+.||.|+.++.++++..+......-..
T Consensus 500 ~s~eL~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqDv~s~~sEIK~~f~~~ss~e~E 579 (769)
T PF05911_consen 500 ISQELNVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQDVSSMRSEIKKNFDGDSSSEAE 579 (769)
T ss_pred hcccHHHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhhhccccccc
Confidence 122222333344444444555677777778888888888888888888888999999888888887766554443222
Q ss_pred HHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHH
Q 000499 728 LLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVS 807 (1460)
Q Consensus 728 L~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~s 807 (1460)
....-..-...... +...++.+......|+..|....-.++.++.+++++|..+..+..+-..+..-...+..
T Consensus 580 ~~~~dea~~~~~~e-------l~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ 652 (769)
T PF05911_consen 580 INSEDEADTSEKKE-------LEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAET 652 (769)
T ss_pred ccchHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111222222222 22334444555566666677777777777777777777776666666655555555666
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhH--------
Q 000499 808 QLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFL-------- 879 (1460)
Q Consensus 808 Ql~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is~L-------- 879 (1460)
||..+....+.++.++++ ++.|.......+..|..-|.-++.-|.++..= --+||.+++..
T Consensus 653 ql~~~~e~~e~le~~~~~-------~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~k----c~~Le~el~r~~~~~~~~~ 721 (769)
T PF05911_consen 653 QLKAMKESYESLETRLKD-------LEAEAEELQSKISSLEEELEKERALSEELEAK----CRELEEELERMKKEESLQQ 721 (769)
T ss_pred HHHHHHHHHHHHhhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhH----HHHHHHHHHhhhcccchhh
Confidence 665555555444444443 33344444444444444444444444332211 11222222211
Q ss_pred --HHHhhhhhh-hhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000499 880 --QEEGLCRKK-AYEEELDKALDAQIEIFITQKYIQDLK 915 (1460)
Q Consensus 880 --qEe~~~r~~-~~eeE~dk~~~AqieifiLq~~l~Dl~ 915 (1460)
.++...+.. ++---=.|...-|==|+.|-+.|+-|.
T Consensus 722 ~~~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQLksLa 760 (769)
T PF05911_consen 722 LANEDKKIKQEKEIAAAAEKLAECQETIASLGKQLKSLA 760 (769)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 222222222 344445566666777777777776655
No 50
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.13 Score=65.66 Aligned_cols=181 Identities=19% Similarity=0.202 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhh
Q 000499 678 CEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLS 757 (1460)
Q Consensus 678 ~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~ 757 (1460)
.|=..|.+.++.|++++.. .++-+-+.-.....+|...-++.++|.+=..+.+.+..+.+-+++|+.....++-
T Consensus 265 ~e~~~L~Ssl~e~~~~l~~---~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~--- 338 (698)
T KOG0978|consen 265 REMRHLISSLQEHEKLLKE---YERELKDTESDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELSKKLR--- 338 (698)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3445666777777777665 5566667777777788888788787777666666666677777776655432111
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHH
Q 000499 758 DENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEK 837 (1460)
Q Consensus 758 Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek 837 (1460)
..+.....+.+.+...+.-..++.-.....+..+...+...-+.++.+-+++-+..+ .-+-.|.
T Consensus 339 --------------~~~~~~~~~~~~~~~~~~~e~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~--~ka~~E~ 402 (698)
T KOG0978|consen 339 --------------SKLLESAKKLKILLREKDRESQKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQ--VKARAET 402 (698)
T ss_pred --------------HHHHHHHHHHHhHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHH--HHHHHHH
Confidence 011111111111111111111111122223333333344444444444444443333 2255677
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhHHHH
Q 000499 838 ESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEE 882 (1460)
Q Consensus 838 ~~~~~~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe 882 (1460)
+.+.+++..+...-..+..+. .....+.+|...+.++.-|+..
T Consensus 403 e~l~q~l~~~~k~e~~e~~k~--~~d~~~r~~~~~~~~~e~Lqk~ 445 (698)
T KOG0978|consen 403 ESLLQRLKALDKEERSEIRKQ--ALDDAERQIRQVEELSEELQKK 445 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--hhHHHHHhHHHHHHHHHHHHHH
Confidence 777777776655544443322 2334455555555555555443
No 51
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.97 E-value=0.097 Score=67.07 Aligned_cols=390 Identities=22% Similarity=0.254 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHH
Q 000499 396 INKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLER 475 (1460)
Q Consensus 396 ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~ 475 (1460)
+..+|..++.+++.++..+.....+++.+....+.+......+|.+..+-.++++-++.-=..+.+-..++|+.+-.|..
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQK 111 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQK 111 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34445556666666666667777777777777777777777777777766666666665445555555666666666666
Q ss_pred hhHhhH---HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHhhhccHHHHHHHHHHHH
Q 000499 476 SNQTLH---SELESMVQKMGSQSQELTEKQKELGRLWTCIQEE-RLRF---VEAETAFQTLQHLHSQSQDELRSLAAELQ 548 (1460)
Q Consensus 476 ~~q~L~---sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E-~~k~---~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~ 548 (1460)
.++.|+ .|-+.+.. ++.....|++-|+..+++- +.|- -+-|-||.+|+... |.-.+|.-|+.
T Consensus 112 qvs~Lk~sQvefE~~Kh-------ei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~ER----eqk~~LrkEL~ 180 (717)
T PF09730_consen 112 QVSVLKQSQVEFEGLKH-------EIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSER----EQKNALRKELD 180 (717)
T ss_pred HHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 666553 34444433 4444445555555555442 1111 12344555544333 33344544444
Q ss_pred HHHH--H---HHHhhhchHhH--HHH-----------HHHHHHHhcc--Ccccc----c----cc----------HHHHH
Q 000499 549 NRAQ--I---LKDMGTRNQSL--QEE-----------VEKVKEENKG--LNELN----L----SS----------AESIK 590 (1460)
Q Consensus 549 ~~~~--~---L~~le~~k~~L--~ee-----------v~~l~EEn~~--L~e~n----~----SS----------~~sIk 590 (1460)
...- - ++.+..+-..+ -.+ -....-.+.+ +.+.+ . ++ ...+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lv~DLfS 260 (717)
T PF09730_consen 181 QHLNIESISYLSNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGGPGLAKGNGDNRMSTPRKSESFSPAPSLVSDLFS 260 (717)
T ss_pred HhcCccccccccchhhcccccccccccccccCCCCchhhhcchhhccchhcccccccccCCCCCCCCCCCCCcccchhhh
Confidence 3111 0 11111110000 000 0001011111 11000 0 00 01122
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhh
Q 000499 591 NLQ-DEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKL 669 (1460)
Q Consensus 591 ~LQ-dEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~L 669 (1460)
.|+ .||-+|+.....++.|..-=+.--...|..+-.-+.++.....+...|.+.|.++.- +.. -++.+......
T Consensus 261 El~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~----l~~-~ke~~~~~d~~ 335 (717)
T PF09730_consen 261 ELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK----LQE-DKEQQSAEDSE 335 (717)
T ss_pred hcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcc-chhhhhhhhcc
Confidence 222 345555555555554444333333344444444444444444444444444433311 000 00111111111
Q ss_pred HHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhh
Q 000499 670 KEVYERDRCEKVALLEKLEI--MEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQ 747 (1460)
Q Consensus 670 kE~~s~~~~EK~~L~~kLq~--mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq 747 (1460)
++..+... ...-.+.+ .+-|--++........++..||..||.+...++..+ ..++..+-+.++
T Consensus 336 ~~~~s~~d----~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~----------~~ek~~~~~e~q 401 (717)
T PF09730_consen 336 KERDSHED----GDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERY----------KQEKDRLESEVQ 401 (717)
T ss_pred cccccccc----cchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 11111000 01111111 233344555555566666666777777666666622 234445555555
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHH
Q 000499 748 DVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKG 815 (1460)
Q Consensus 748 ~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~ 815 (1460)
.+..++..+....-.=...+.+++.++-.++.-..+...++.+-.++-..+..+++.|..+|......
T Consensus 402 ~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNge 469 (717)
T PF09730_consen 402 NLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMCNGE 469 (717)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 55444444433332234488899999999999999999999999999999999999999999986644
No 52
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.97 E-value=0.011 Score=67.91 Aligned_cols=166 Identities=23% Similarity=0.291 Sum_probs=92.7
Q ss_pred hhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH-HHHHHHHHhhhhhhhhHHhHHHHHHhHHHHH
Q 000499 735 LVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSK-SLEDSCLLLDNEKSCLITERVNLVSQLDIAR 813 (1460)
Q Consensus 735 L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k-~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~ 813 (1460)
|..|-..|-.|+. ..-.+..=.-..+.|...+.++.++.+..-.+.+ +++. .+...-..+......-...+..+.
T Consensus 140 heeEi~~L~~~~~-~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~---~y~~k~~~l~~~~~~~~~~~~~~~ 215 (312)
T PF00038_consen 140 HEEEIEELREQIQ-SSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEE---WYQSKLEELRQQSEKSSEELESAK 215 (312)
T ss_dssp HHHHHHTTSTT-----------------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccc-cccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhh---hcccccccccccccccccccchhH
Confidence 4445555556654 1111111112234466666666666665555554 2222 222222333333444445555556
Q ss_pred HHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhhhHHH
Q 000499 814 KGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEE 893 (1460)
Q Consensus 814 ~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE 893 (1460)
..+..+...+..+.....+++..+..+-..|.++...+..+.+.| ...|+.+|.++..++........+|++=
T Consensus 216 ~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~-------~~~i~~le~el~~l~~~~~~~~~ey~~L 288 (312)
T PF00038_consen 216 EELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEY-------QAEIAELEEELAELREEMARQLREYQEL 288 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHH-------HHhhhccchhHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666665544 5678999999999999999999999887
Q ss_pred HHHHHhhHHHHHHHHHHH
Q 000499 894 LDKALDAQIEIFITQKYI 911 (1460)
Q Consensus 894 ~dk~~~AqieifiLq~~l 911 (1460)
+|--+.=.+||-.-.+.|
T Consensus 289 l~~K~~Ld~EIatYR~LL 306 (312)
T PF00038_consen 289 LDVKLALDAEIATYRKLL 306 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 777666666666555544
No 53
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.95 E-value=0.0084 Score=68.86 Aligned_cols=286 Identities=22% Similarity=0.283 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhc-cCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000499 537 QDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENK-GLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVD 615 (1460)
Q Consensus 537 QeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~-~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ 615 (1460)
.+++..|+-.+-.-..++..|+..|..|..+|..+..-.. ............|..++..|..+...+.+++.+++--..
T Consensus 3 K~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~ 82 (312)
T PF00038_consen 3 KEELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKE 82 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence 3566677777777778888888888888888777644321 011111111223445555555444444444443332222
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHH----HhHHHHHHHHHHHHH--
Q 000499 616 QRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYE----RDRCEKVALLEKLEI-- 689 (1460)
Q Consensus 616 ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s----~~~~EK~~L~~kLq~-- 689 (1460)
+-+.+...+.........+......+...+... ...--+|+..+..|++++. .|..|-..|..++..
T Consensus 83 e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~-------~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~ 155 (312)
T PF00038_consen 83 ELEDLRRKYEEELAERKDLEEELESLRKDLDEE-------TLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSV 155 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh-------hhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccc
Confidence 222222222222222222222222222222222 2222233333333333332 233344444444431
Q ss_pred -HHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhh
Q 000499 690 -MEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLF 768 (1460)
Q Consensus 690 -mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slS 768 (1460)
++-=.-...-|...|.++.++.+..-.+.+ ++.-..+......+.. +....+..+..+.+.+..+-..+.
T Consensus 156 ~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~--~e~e~~y~~k~~~l~~-------~~~~~~~~~~~~~~E~~~~r~~~~ 226 (312)
T PF00038_consen 156 TVEVDQFRSSDLSAALREIRAQYEEIAQKNR--EELEEWYQSKLEELRQ-------QSEKSSEELESAKEELKELRRQIQ 226 (312)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeecccccccchhhhhhHHHHHHHHHhhhh--hhhhhhcccccccccc-------cccccccccchhHhHHHHHHhhhh
Confidence 000001112234444444444443333322 2333333333333332 222233345555666677777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhh----hhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHH
Q 000499 769 DANAEVEGLRAKSKSLEDSCLLLDNEKS----CLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKE 838 (1460)
Q Consensus 769 d~n~ElE~lr~K~k~lEes~~~l~~e~s----~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~ 838 (1460)
.+.+++++++.+...|+..+..+...+. .+......+..+|..++..+...-.+|.+|.+--..|..||.
T Consensus 227 ~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIa 300 (312)
T PF00038_consen 227 SLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIA 300 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 7777777777777777777766554443 355777888888888888888888888888888888888874
No 54
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.90 E-value=0.24 Score=65.41 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=17.5
Q ss_pred HHHHHHHHHH------HHHhhcccCCCcchhhhhh
Q 000499 962 VLRVQLYQLL------EILEIDADHGCETKMEQDQ 990 (1460)
Q Consensus 962 ~Lr~gi~qv~------k~L~i~~~~g~~d~~~~e~ 990 (1460)
.||-+++.++ ..|=||.+-|+.|.-..+.
T Consensus 827 alrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~ 861 (908)
T COG0419 827 ALRLALSDLLQGRARLELLFLDEPFGTLDEERLEK 861 (908)
T ss_pred HHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHH
Confidence 3455555543 4466788888777555554
No 55
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.84 E-value=0.2 Score=62.96 Aligned_cols=122 Identities=16% Similarity=0.294 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCC----------ccchhh
Q 000499 588 SIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLN----------PENFGL 657 (1460)
Q Consensus 588 sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~----------~e~~~~ 657 (1460)
.+..+++.|..|-+..++ .+.-+....+....+...+..+...+..+..++..|+-+ ..++..
T Consensus 283 ~~~~i~~~Id~Lyd~lek-------E~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lek 355 (569)
T PRK04778 283 KNEEIQERIDQLYDILER-------EVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEK 355 (569)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHH
Confidence 344555555555544433 333444555555555555555555555555555555444 233333
Q ss_pred hHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhHhhhhHHHHHHH
Q 000499 658 SVKELQDENSKLKEVYERDRCEKVALLEKLEI-MEKLLEKNAVLENSLSDLNVELEGVRDKVKA 720 (1460)
Q Consensus 658 ~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~-mekLlEkns~LE~SLSdan~ELegLReK~K~ 720 (1460)
.+++++.....+.+.+...... .+.++. ++.+.++..-+++........+.+||..-..
T Consensus 356 eL~~Le~~~~~~~~~i~~~~~~----ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~e 415 (569)
T PRK04778 356 QLESLEKQYDEITERIAEQEIA----YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELE 415 (569)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333333333322 344443 4455555555555555555555555554433
No 56
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.83 E-value=0.41 Score=66.17 Aligned_cols=240 Identities=18% Similarity=0.220 Sum_probs=119.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHH
Q 000499 390 EEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEK 469 (1460)
Q Consensus 390 ee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~ 469 (1460)
......+...++.....+..++..+..+..+...+..+++.+...+..+...+...|.++..+...+ ..+..++.-
T Consensus 354 ~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i----~~Le~~~~~ 429 (1486)
T PRK04863 354 QADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAV----QALERAKQL 429 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 3333334444444455555555555555555555555555555555555555555555555554443 334444444
Q ss_pred HhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhhhccHHHH
Q 000499 470 CLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRF---------VEAETAFQTLQHLHSQSQDEL 540 (1460)
Q Consensus 470 ~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~---------~EaE~aL~~Lq~LhSqSQeE~ 540 (1460)
|..=--+...|....++...++.....++.....++..++..+..-.... +....+.+....+..+ -.+.
T Consensus 430 ~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~-~~~~ 508 (1486)
T PRK04863 430 CGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRR-LREQ 508 (1486)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHH-hHHH
Confidence 43111112223333344444443333333333333333333332211110 2233333333222111 2455
Q ss_pred HHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 000499 541 RSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNAL 620 (1460)
Q Consensus 541 ~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aL 620 (1460)
+.++.....+...|.+++.+.+.-+.-.+.+.+=+..+ ...+.+...+..+ -..+-...+.++.++.--...+..+
T Consensus 509 ~~~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (1486)
T PRK04863 509 RHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRL-GKNLDDEDELEQL---QEELEARLESLSESVSEARERRMAL 584 (1486)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777778887775444333333333322222 2334443334444 4444455556666777667788889
Q ss_pred HHHHHhhHHHHHHHHHHH
Q 000499 621 QQEIYCLKEELNELNKKH 638 (1460)
Q Consensus 621 q~el~~lkee~~~Ln~k~ 638 (1460)
++.+-.+...+..+..++
T Consensus 585 r~~~~qL~~~i~~l~~~a 602 (1486)
T PRK04863 585 RQQLEQLQARIQRLAARA 602 (1486)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 999988999999888866
No 57
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.80 E-value=0.28 Score=63.12 Aligned_cols=66 Identities=26% Similarity=0.293 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 537 QDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAE 609 (1460)
Q Consensus 537 QeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~E 609 (1460)
++-..-|..||..+.+-.++++.+..+-++.|+....-|....+. +.+|||.|--++....-.+.+
T Consensus 489 ~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRel-------va~Lqdqlqe~~dq~~Sseee 554 (1243)
T KOG0971|consen 489 RELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFREL-------VAHLQDQLQELTDQQESSEEE 554 (1243)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHhhhhhhHHH
Confidence 444556788888888888899999888888888765555544444 556666666666544444333
No 58
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.78 E-value=0.27 Score=62.51 Aligned_cols=230 Identities=19% Similarity=0.189 Sum_probs=134.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 235 AEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIR 314 (1460)
Q Consensus 235 Ae~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~Ll 314 (1460)
...|..+++.....+...+---.+|..---.|+..+|.+...+|.-..++++....+++|+..+...+-.+..+.-|---
T Consensus 83 stqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~ 162 (1265)
T KOG0976|consen 83 STQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAH 162 (1265)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhH
Confidence 34566677777777777777777777777778888888888888888888877777778777777766655555332211
Q ss_pred --------HHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000499 315 --------QYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKL 386 (1460)
Q Consensus 315 --------qykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki 386 (1460)
-.++| +.|..++.++.+.-+++..+|... +.+++-|+.++... ..||-+-+++
T Consensus 163 eIf~~~~~L~nk~-~~lt~~~~q~~tkl~e~~~en~~l---e~k~~k~~e~~~~n---------------D~~sle~~~~ 223 (1265)
T KOG0976|consen 163 DIFMIGEDLHDKN-EELNEFNMEFQTKLAEANREKKAL---EEKLEKFKEDLIEK---------------DQKSLELHKD 223 (1265)
T ss_pred HHHHHHHHHhhhh-hHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcc---------------hHHHHHHHHH
Confidence 12222 334445555554444444444332 22222232222211 1222222332
Q ss_pred hhhhHh----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 000499 387 LHSEED----SKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLE-------AISILEHKLARAEEEAQRLHSE 455 (1460)
Q Consensus 387 ~~aee~----~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~-------kI~~LE~els~sQEEv~RL~~E 455 (1460)
.+...+ +..|..+ ...+..+++.+.++++.-..++.....+++ +=+.|..++|+..+-|+-++.+
T Consensus 224 q~~tq~vl~ev~QLss~----~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qee 299 (1265)
T KOG0976|consen 224 QENTQKVLKEVMQLSSQ----KQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEE 299 (1265)
T ss_pred HHHHHHHHHHHHHHHHh----HhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 222221 2223332 445566777777777776666666655544 4566778999999999999999
Q ss_pred HHhHHhh----hhhHHHHHhHHHHhhHhhHHHHHHH
Q 000499 456 LDNGFAK----LKGAEEKCLLLERSNQTLHSELESM 487 (1460)
Q Consensus 456 i~~~~~k----L~~lE~~~~~LE~~~q~L~sE~e~L 487 (1460)
++.+.+- ..+.|+.-.+|+..|..+..+.-.+
T Consensus 300 Ld~lkqt~t~a~gdseqatkylh~enmkltrqkadi 335 (1265)
T KOG0976|consen 300 LDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADI 335 (1265)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 8776553 4456666666665555555444333
No 59
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.76 E-value=5.6e-06 Score=104.91 Aligned_cols=112 Identities=17% Similarity=0.188 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHH
Q 000499 769 DANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQ 848 (1460)
Q Consensus 769 d~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~ 848 (1460)
.++.++..++..+.+++..+.. ++......|...|..-...++..+.+|..-.+|+- .++..+..++
T Consensus 551 e~~~e~~~~~~~le~l~~~~~~------~~~~ki~~Le~~L~~k~~e~~~~eer~k~~lekak-------~vi~~Ld~k~ 617 (713)
T PF05622_consen 551 ELKDELQKKREQLEELEQELNQ------SLSQKIEELEEALQKKEEEMRAMEERYKKYLEKAK-------EVIKTLDPKQ 617 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH-------HHhhccChhc
Confidence 4445555555555554433221 12233344445555555555555555543333332 2333333332
Q ss_pred HhHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHHHhh
Q 000499 849 FSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDA 900 (1460)
Q Consensus 849 ~sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~~~A 900 (1460)
-. +..-...=.+++.+.+..|..|..+..-.+...+.|+.=++.|
T Consensus 618 ~~-------~~~e~~~L~~ql~e~~~~i~~lE~~~e~~k~~~~~EekLi~sa 662 (713)
T PF05622_consen 618 NP-------SSPEIQALKKQLQEKDRRIESLEKELEKSKQMREQEEKLIVSA 662 (713)
T ss_dssp ----------------------------------------------------
T ss_pred cC-------ChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 22 1111122233677777777777777655555555565555544
No 60
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.75 E-value=0.28 Score=61.77 Aligned_cols=188 Identities=19% Similarity=0.289 Sum_probs=102.2
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhh
Q 000499 415 GKLTEEKEALALQYQQ-CLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGS 493 (1460)
Q Consensus 415 ~~L~eekeal~l~~qq-~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~ 493 (1460)
++-.+.++.....++. ....+...+..+..+.+.+.+.+.= .....+++++......|.....+..+++.|.+.-..
T Consensus 60 Ges~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~--~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~ 137 (569)
T PRK04778 60 GQSEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFR--KAKHEINEIESLLDLIEEDIEQILEELQELLESEEK 137 (569)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777777777 5666777888888887777765421 222223333333333444455555666655554443
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhc-----cHHHHHHHHHHHHHHHHHHHHh
Q 000499 494 QSQELTEKQKELGRLWTCIQEE-----------RLRFVEAETAFQTLQHLHSQ-----SQDELRSLAAELQNRAQILKDM 557 (1460)
Q Consensus 494 ~~qeL~eK~~Ei~~Lq~slq~E-----------~~k~~EaE~aL~~Lq~LhSq-----SQeE~~~L~~Ei~~~~~~L~~l 557 (1460)
...++.+....-..++..+-.. -.++-..+..|..|..+-+. ..+-+..+..++..+...+..+
T Consensus 138 nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~i 217 (569)
T PRK04778 138 NREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEI 217 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444332 34455556666666555433 3555555555555555544443
Q ss_pred -------hh----chHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHH
Q 000499 558 -------GT----RNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKL 606 (1460)
Q Consensus 558 -------e~----~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kL 606 (1460)
.+ .-.+|..-.+.+.++.-.|.+.++.+ -|..+++.+.........+
T Consensus 218 P~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~--~i~~l~~~i~~~~~~l~~l 275 (569)
T PRK04778 218 PELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEK--EIQDLKEQIDENLALLEEL 275 (569)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHH--HHHHHHHHHHHHHHHHHhc
Confidence 11 22234444555556655666666655 5777777777766655554
No 61
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.73 E-value=0.18 Score=64.87 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=19.5
Q ss_pred cchhhHHHHHHHhhhhhhHHHHhhHHHHHHH
Q 000499 1183 CINNELEEKVRLKDGKLEDVQMQNSLLKQSL 1213 (1460)
Q Consensus 1183 ~~~~eL~~~v~~l~~kle~~e~en~~Lk~~l 1213 (1460)
.-..++++-+.+|-.....+|.++.+||+-+
T Consensus 1019 ~Ke~efeetmdaLq~di~~lEsek~elKqrl 1049 (1243)
T KOG0971|consen 1019 KKEKEFEETMDALQADIDQLESEKAELKQRL 1049 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 3344556666666666666777777777754
No 62
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.36 Score=61.72 Aligned_cols=161 Identities=22% Similarity=0.255 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhhhhhh-----hhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhH-----H--------------HHHhh
Q 000499 690 MEKLLEKNAVLENSLSD-----LNVELEGVRDKVKALEEVCQNLLAEKSTLVAEK-----N--------------SLFSQ 745 (1460)
Q Consensus 690 mekLlEkns~LE~SLSd-----an~ELegLReK~K~LEesc~sL~~eKS~L~sEK-----~--------------~LvSQ 745 (1460)
|...++-...+.+-..+ +++|+++++.+++++...-.+=......=..+| . .|++.
T Consensus 376 ~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e 455 (698)
T KOG0978|consen 376 NELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSE 455 (698)
T ss_pred HHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556555555555555 888888888888877766555222111111111 2 44555
Q ss_pred hhHHHHHHHhhhhhhhhh-------hhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHH
Q 000499 746 LQDVNENLKKLSDENNFL-------VNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKD 818 (1460)
Q Consensus 746 Lq~~~~~l~~L~Ekns~L-------E~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~ 818 (1460)
+++++.-+++..+.|+.| +-.++.+=.|......+.+-|. .++..|..|+..+...-..
T Consensus 456 ~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~--------------~ek~~l~~~i~~l~~~~~~ 521 (698)
T KOG0978|consen 456 METIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLR--------------EEKSKLEEQILTLKASVDK 521 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 555555555555554444 2233344444444444444432 3333333333333333334
Q ss_pred HHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhc
Q 000499 819 LEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQL 864 (1460)
Q Consensus 819 lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~q~h~~~~k~ 864 (1460)
+......++++-..++....+...++.-+..++..-+..-.++.++
T Consensus 522 ~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~ 567 (698)
T KOG0978|consen 522 LELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQS 567 (698)
T ss_pred HHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555555555555555555555444444444333
No 63
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.63 E-value=0.43 Score=60.54 Aligned_cols=121 Identities=21% Similarity=0.281 Sum_probs=59.6
Q ss_pred HHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 378 MISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKE---ALALQYQQCLEAISILEHKLARAEEEAQRLHS 454 (1460)
Q Consensus 378 ~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eeke---al~l~~qq~~~kI~~LE~els~sQEEv~RL~~ 454 (1460)
.+|.+..++-+.+..+.++-..+.+.+.++.--...+........ +......++.+.++..+..++.+ .+...++.
T Consensus 166 s~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~-~ele~i~~ 244 (716)
T KOG4593|consen 166 SLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLS-EELEAINK 244 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh-hHHHHHHH
Confidence 345555555555555555555444444444333333332222222 22233345666666666666654 34555666
Q ss_pred HHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 000499 455 ELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWT 510 (1460)
Q Consensus 455 Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~ 510 (1460)
.++...+.+..++ ..+..+.+++..+.+.. .-....+.|+..|+.
T Consensus 245 ~~~dqlqel~~l~-------~a~~q~~ee~~~~re~~----~tv~~LqeE~e~Lqs 289 (716)
T KOG4593|consen 245 NMKDQLQELEELE-------RALSQLREELATLRENR----ETVGLLQEELEGLQS 289 (716)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHH
Confidence 6666666665544 34555566665554444 233344444444443
No 64
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.60 E-value=0.71 Score=62.25 Aligned_cols=296 Identities=16% Similarity=0.143 Sum_probs=153.2
Q ss_pred HHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh-hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000499 897 ALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQES-SLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQLLEILE 975 (1460)
Q Consensus 897 ~~~AqieifiLq~~l~Dl~~kn~~ll~EcQk~~eas-~~se~lIseLe~E~~~~q~e~~~L~~~~~~Lr~gi~qv~k~L~ 975 (1460)
+-.-++..-+++..+.|++.- ..=+|-+...--+ -....=+-++-.|-...+.+...+...+..++..+....+..+
T Consensus 780 ~~~l~~~~~~~e~~~~d~~~~--~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~ 857 (1294)
T KOG0962|consen 780 AETLQTDVTVLERFLKDLKLR--EKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREIS 857 (1294)
T ss_pred HHHHhhhhHHHHHHHHHHHHH--HHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566667777766532 2223333222222 2333445667777777778888888888888887777666544
Q ss_pred hcccCCCcchhhhhhhhHHHHHHHHhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 000499 976 IDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQ 1055 (1460)
Q Consensus 976 i~~~~g~~d~~~~e~~l~~~l~~i~~~i~~l~~s~~~~q~enq~~~vEnsvL~t~L~ql~~e~~~L~~Ek~~L~~E~~~~ 1055 (1460)
=-...+.+-+.. ++-+..-+..+..+...+.+++++-....- -+-.++..++.....|+.=-.+.+++-...
T Consensus 858 ~l~~~~~e~k~~-----~~~~~~~l~~~~qle~~~~~l~e~~~~~~s---~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~ 929 (1294)
T KOG0962|consen 858 RLINLRNELKEE-----KQKIERSLARLQQLEEDIEELSEEITRLDS---KVKELLERIQPLKVELEEAQSEKEELKNER 929 (1294)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHhhHhhhcchhhhHHHHHHHHHHHHHHh
Confidence 333333221111 123444444445555555555555544443 334444444444433333223333332222
Q ss_pred HHHHHHhhhhhhhHHHHhHHHHHHHHhhhhhHHHHHHHHHH-----HHHHHhHhHHHHHHhH---------hhhhhhhhh
Q 000499 1056 SEQFVVLQREFPKLTEINEELRVEVAERNHTEEVLKTEMRS-----LHMLLSELQGAQQSLQ---------DQNCKVLDE 1121 (1460)
Q Consensus 1056 s~q~l~Lq~e~~eLle~n~qL~~~~~~~~~ree~lk~E~~~-----l~~~l~~l~~s~~~lq---------~e~~~~~~e 1121 (1460)
.-.-.+.|+..+++.+++..|+.-..-+..-....+.++.. +...+.+++.-....+ +-+.+--=.
T Consensus 930 ~~~~~~aqk~~~~ine~~s~l~~~~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~ 1009 (1294)
T KOG0962|consen 930 NTSEKLAQKKRNDINEKVSLLHQIYKLNECFEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLT 1009 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22445566777888888888777777666666666554431 1111222222111111 111111112
Q ss_pred hhhHHHHhhhhHHhhhhhhhhhhhHHHHHhhhccchhhhhhhHHHHHHHHHHHHHhHhhhhcchhhHHHHHHHhhhhh--
Q 000499 1122 KKSLMKKVLDLQEEKHSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKDGKL-- 1199 (1460)
Q Consensus 1122 ~~sL~k~~~~l~e~~~~lEden~~~l~E~i~~~~ls~~~~~~~~Ek~~~l~~L~e~l~~L~~~~~eL~~~v~~l~~kl-- 1199 (1460)
...|..++..+..+.+.++-++.. +-+..-..+-+-|.+..+.+.+.++++.+.++....-.
T Consensus 1010 ~~~l~~q~~e~~re~~~ld~Qi~~----------------~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~ 1073 (1294)
T KOG0962|consen 1010 LRNLERKLKELERELSELDKQILE----------------ADIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKK 1073 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------hHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHH
Confidence 345556666666666666655544 22344456677888889999999888888776432211
Q ss_pred --------hHHHHhhHHHHHHHHhhHH
Q 000499 1200 --------EDVQMQNSLLKQSLEKSEN 1218 (1460)
Q Consensus 1200 --------e~~e~en~~Lk~~le~~~~ 1218 (1460)
.-..++++|.+++++...-
T Consensus 1074 ~k~eL~~~~~kd~~~nyr~~~ie~~tt 1100 (1294)
T KOG0962|consen 1074 LKQELREKDFKDAEKNYRKALIELKTT 1100 (1294)
T ss_pred HHHHhhhhhhccHHHHHHHHHHHHHHH
Confidence 1234456666666554443
No 65
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.59 E-value=0.18 Score=62.62 Aligned_cols=122 Identities=24% Similarity=0.240 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHH
Q 000499 405 SEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSEL 484 (1460)
Q Consensus 405 ~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~ 484 (1460)
.++..|+.+...+++++..+..+++++..-+..++..+....+-.+..-.++........+.|.++-.+-.....+..++
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~ 353 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREEL 353 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 44667777777888888888888888877777777777665555544444444444333333555444443344443333
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 000499 485 ESMVQKMGSQSQELTEKQKELGRLWTCIQEER--LRFVEAETAFQTL 529 (1460)
Q Consensus 485 e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~--~k~~EaE~aL~~L 529 (1460)
-.. .....-.+..+-.|++.|+..+-.-. ....+.|..|..+
T Consensus 354 ~~~---~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~l 397 (511)
T PF09787_consen 354 SRQ---KSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQL 397 (511)
T ss_pred HHh---cChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhc
Confidence 222 22234456777888888888777633 2233444444443
No 66
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.58 E-value=0.44 Score=59.79 Aligned_cols=153 Identities=18% Similarity=0.282 Sum_probs=93.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHH
Q 000499 414 LGKLTEEKEALALQYQQCLEAISILEHKLA------------------RAEEEAQRLHSELDNGFAKLKGAEEKCLLLER 475 (1460)
Q Consensus 414 l~~L~eekeal~l~~qq~~~kI~~LE~els------------------~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~ 475 (1460)
-..|......++.+......+|++|+..+- -.+++|+-+-.+++.-+.++-++|..|..|..
T Consensus 184 e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ 263 (629)
T KOG0963|consen 184 EAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLRE 263 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777788888888888888855443 34555555667778888888888888887754
Q ss_pred hhHhhHHH--------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Q 000499 476 SNQTLHSE--------LESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAEL 547 (1460)
Q Consensus 476 ~~q~L~sE--------~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei 547 (1460)
+.....+. .+.....+-.++.++.+.-++|.+++.+..++...+. .+++.|..++
T Consensus 264 ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~-----------------~qI~~le~~l 326 (629)
T KOG0963|consen 264 QLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHK-----------------AQISALEKEL 326 (629)
T ss_pred HHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHH
Confidence 44433322 2222333335667777777777777777777555444 3344444444
Q ss_pred HHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccc
Q 000499 548 QNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLS 584 (1460)
Q Consensus 548 ~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~S 584 (1460)
......|+.+.+.-++. ..+..++.|...|....|+
T Consensus 327 ~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~ief~ 362 (629)
T KOG0963|consen 327 KAKISELEELKEKLNSR-SDYEEIKKELSILKAIEFG 362 (629)
T ss_pred HHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHhhcC
Confidence 44444444444333322 5666677777777666666
No 67
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.56 E-value=0.51 Score=59.64 Aligned_cols=453 Identities=21% Similarity=0.257 Sum_probs=229.0
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhh
Q 000499 419 EEKEALALQYQQC----LEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQ 494 (1460)
Q Consensus 419 eekeal~l~~qq~----~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~ 494 (1460)
.+.+..+--|.+. ..=|.+.|..--++.....-|+..+.....++.++|..+ +.+.......+..+
T Consensus 176 ~EREET~qly~~l~~niekMi~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~leeey----------~~E~n~kEkqvs~L 245 (786)
T PF05483_consen 176 YEREETRQLYMDLNENIEKMIAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEEEY----------KKEVNDKEKQVSLL 245 (786)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhhHHHHHHHH
Confidence 3444444444433 333455566666666666667777778888887777652 33333344444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHH
Q 000499 495 SQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEE 574 (1460)
Q Consensus 495 ~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EE 574 (1460)
.-.+.+|-+.+..|.--+++=..++-+-+.+-....-+..+|++++.+|..+++....-+.........|+..+.....-
T Consensus 246 ~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~ 325 (786)
T PF05483_consen 246 QTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKT 325 (786)
T ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777777777777777666666666665556566678899999999999988888888777777777766665444
Q ss_pred hccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 000499 575 NKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPEN 654 (1460)
Q Consensus 575 n~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~ 654 (1460)
+-.|++..-+. +.-+..+... |..--..++--++.+++-+.-=..|.....+++
T Consensus 326 ~~qlt~eKe~~----------~Ee~nk~k~~-------~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~l--------- 379 (786)
T PF05483_consen 326 LIQLTEEKEAQ----------MEELNKAKAQ-------HSFVVTELQTTICNLKELLTTEQQRLKKNEDQL--------- 379 (786)
T ss_pred HHHHHHhHHHH----------HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------
Confidence 33333222111 0001100000 100111112222222211111111222222222
Q ss_pred hhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhh
Q 000499 655 FGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKST 734 (1460)
Q Consensus 655 ~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~ 734 (1460)
...+.+||..+..|.+... ...-|. -+|+.+.+.|.+++-|= ...+.|+-.|..|++---.
T Consensus 380 -k~l~~eLqkks~eleEmtk-~k~~ke---~eleeL~~~L~e~qkll--------------~ekk~~eki~E~lq~~eqe 440 (786)
T PF05483_consen 380 -KILTMELQKKSSELEEMTK-QKNNKE---VELEELKKILAEKQKLL--------------DEKKQFEKIAEELQGTEQE 440 (786)
T ss_pred -HHHHHHHHHhhHHHHHHHH-HhhhhH---HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 2234555555555543321 111111 11233333222222110 0011122222222211110
Q ss_pred hhhhHHHHHhhhhHHHHHHHhhhhhhhhhh-------hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHH
Q 000499 735 LVAEKNSLFSQLQDVNENLKKLSDENNFLV-------NSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVS 807 (1460)
Q Consensus 735 L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE-------~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~s 807 (1460)
|+-=|++....+.+|....+..- ...-++++|++.-..|..+|=..|..+.-++..+..+...+..
T Consensus 441 -------l~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~ 513 (786)
T PF05483_consen 441 -------LTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMAL 513 (786)
T ss_pred -------HHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11113333333333333332221 2234567788877788888999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHH-------HHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhHH
Q 000499 808 QLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVE-------ELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQ 880 (1460)
Q Consensus 808 Ql~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~ve-------el~~sL~~e~q~h~~~~k~se~~l~~lE~~is~Lq 880 (1460)
.+..+++.+.+.++.-.....-.-+|.....-+-+.|+ ....-+...-.+...-.++-+..+...+.++..|.
T Consensus 514 elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~le 593 (786)
T PF05483_consen 514 ELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILE 593 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHH
Confidence 99999999999877666555444444444433333333 33333332223333333344445555566666665
Q ss_pred HHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhHHHHHHHHHhhhh
Q 000499 881 EEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENC 947 (1460)
Q Consensus 881 Ee~~~r~~~~eeE~dk~~~AqieifiLq~~l~Dl~~kn~~ll~EcQk~~eas~~se~lIseLe~E~~ 947 (1460)
.++...++ ||+ ---+||.+|.+.|=.|=-..=+-..-+.+.+.-|+.|+.|..
T Consensus 594 nk~~~LrK------------qvE--nk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e 646 (786)
T PF05483_consen 594 NKCNNLRK------------QVE--NKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELE 646 (786)
T ss_pred HHHHHHHH------------HHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55543333 233 124555555555555544333333334444545554444433
No 68
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.52 E-value=0.73 Score=60.35 Aligned_cols=349 Identities=19% Similarity=0.159 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhh
Q 000499 682 ALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENN 761 (1460)
Q Consensus 682 ~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns 761 (1460)
.++.+||.|...--+.-.-.+.|.+++.+|.++...... |..|+.+-....-+.+.+.-+++..+ ...+...+-
T Consensus 671 ~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~k----f~~l~~ql~l~~~~l~l~~~r~~~~e--~~~~~~~~~ 744 (1174)
T KOG0933|consen 671 DLLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQK----FRDLKQQLELKLHELALLEKRLEQNE--FHKLLDDLK 744 (1174)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCh--HhhHHHHHH
Confidence 367788888777777778888888888888777655443 34444444444444444444444321 223333333
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHH
Q 000499 762 FLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTL 841 (1460)
Q Consensus 762 ~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~ 841 (1460)
.+..-+-++..++...+..++..++....+-.......+.+ .-+++.+++++....-+...-..+-++..
T Consensus 745 ~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~r----------e~rlkdl~keik~~k~~~e~~~~~~ek~~ 814 (1174)
T KOG0933|consen 745 ELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANR----------ERRLKDLEKEIKTAKQRAEESSKELEKRE 814 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555554444432222111111111 11233333333333333333334444444
Q ss_pred HHHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhh
Q 000499 842 QKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSL 921 (1460)
Q Consensus 842 ~~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~~~AqieifiLq~~l~Dl~~kn~~l 921 (1460)
+.++.+ ..|+++......+++.++-.++.+++.|..+.-......--..+....+|-++....+.+-|.-.-=-.+
T Consensus 815 ~e~e~l----~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~ 890 (1174)
T KOG0933|consen 815 NEYERL----QLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGL 890 (1174)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhh
Confidence 444443 3455566666678888899999999999999888888888888888889999999888888877666778
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcccCCCcchhhhhhhhHHHHHHHH
Q 000499 922 LFECQKLLQESSLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQLL-EILEIDADHGCETKMEQDQSHQTLLDQVT 1000 (1460)
Q Consensus 922 l~EcQk~~eas~~se~lIseLe~E~~~~q~e~~~L~~~~~~Lr~gi~qv~-k~L~i~~~~g~~d~~~~e~~l~~~l~~i~ 1000 (1460)
+..|++..-+....+-=+.+|+.|....+.+.......+.+|...+--.- ..=.+...++.-| ++-.- ..-..
T Consensus 891 ~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yD-f~~~~-----p~~ar 964 (1174)
T KOG0933|consen 891 LTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYD-FESYD-----PHEAR 964 (1174)
T ss_pred hhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccc-cccCC-----HhHHH
Confidence 89999999998888888888999999888888888888888765322211 1122323222222 11111 12223
Q ss_pred hHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Q 000499 1001 GKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQSEQFVVL 1062 (1460)
Q Consensus 1001 ~~i~~l~~s~~~~q~enq~~~vEnsvL~t~L~ql~~e~~~L~~Ek~~L~~E~~~~s~q~l~L 1062 (1460)
.+|..|+.-+...+. ++++ -.+..|.--.....+|.+=+++++.+....-.-..-|
T Consensus 965 e~l~~Lq~k~~~l~k-~vn~-----~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~l 1020 (1174)
T KOG0933|consen 965 EELKKLQEKKEKLEK-TVNP-----KNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKL 1020 (1174)
T ss_pred HHHHHhhHHHHHHHh-hcCH-----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444433322 1111 1244566667778888888888887765444433333
No 69
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.51 E-value=0.59 Score=60.48 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=14.5
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHH
Q 000499 666 NSKLKEVYERDRCEKVALLEKLEI 689 (1460)
Q Consensus 666 n~~LkE~~s~~~~EK~~L~~kLq~ 689 (1460)
-..+-+.|.....+-.+.++.|.+
T Consensus 684 ~d~v~~l~k~~~~~a~~~~~~l~~ 707 (980)
T KOG0980|consen 684 SDRVNDLCKKCGREALAFLVSLSS 707 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666666666666666554
No 70
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.51 E-value=0.68 Score=59.77 Aligned_cols=118 Identities=18% Similarity=0.220 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 000499 430 QCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLW 509 (1460)
Q Consensus 430 q~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq 509 (1460)
.+..+|..|+.++.++..++.|...|++.+.....++=..|..+|.+...|+.|+.....+=+-+.+.- .|++.=+
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dy----selEeEN 106 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDY----SELEEEN 106 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHH
Confidence 456678888888888888888888888888888888888888888888888888887766553333333 3333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhh
Q 000499 510 TCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMG 558 (1460)
Q Consensus 510 ~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le 558 (1460)
.++|+.+.-.-+.-+.|-.| +-|+++|..|++.+...|.+..
T Consensus 107 islQKqvs~Lk~sQvefE~~-------Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 107 ISLQKQVSVLKQSQVEFEGL-------KHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred HHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 55555433222222222221 2345555555555555554443
No 71
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.50 E-value=0.82 Score=60.60 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHH
Q 000499 899 DAQIEIFITQKYIQDLKEKNFSLLF 923 (1460)
Q Consensus 899 ~AqieifiLq~~l~Dl~~kn~~ll~ 923 (1460)
.+.+..+++++.++.+.......|.
T Consensus 754 ~~~~~~~~~~~~~~~i~~~~~~~l~ 778 (908)
T COG0419 754 KAGLRADILRNLLAQIEAEANEILS 778 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345778888888777665544443
No 72
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.44 E-value=0.06 Score=66.46 Aligned_cols=139 Identities=13% Similarity=0.210 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHH
Q 000499 302 LARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAV--VKYEECSRMI 379 (1460)
Q Consensus 302 la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~--lqyqQcLE~I 379 (1460)
+..++.+.+....++++=...+..+++.+.....+.....+-+.+++.++..++.++..+........ ..+.-|-.-|
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~ 294 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQI 294 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcC
Confidence 44444444444444444444455555555444433333334444455555555555555543333221 0122344555
Q ss_pred HHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 380 SALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQR 451 (1460)
Q Consensus 380 S~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~R 451 (1460)
+..+..+..+. ..+..++.++..+...+..+++..+ ++.+...++..++..+......+..
T Consensus 295 ~~~~~~~~~l~-------d~i~~l~~~l~~l~~~i~~~~~~~~----~~~~~~~~i~el~~~i~~~~~~i~~ 355 (562)
T PHA02562 295 SEGPDRITKIK-------DKLKELQHSLEKLDTAIDELEEIMD----EFNEQSKKLLELKNKISTNKQSLIT 355 (562)
T ss_pred CCcHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333 3444445555555555443333332 3444444444444444444444333
No 73
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.22 E-value=0.63 Score=58.28 Aligned_cols=343 Identities=19% Similarity=0.232 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhc----cCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 537 QDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENK----GLNELNLSSAESIKNLQDEILSLRETIGKLEAEVEL 612 (1460)
Q Consensus 537 QeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~----~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~ 612 (1460)
+.|+..|+-.+-.-.+++..||..|..|..+|..+..--. +++..+ -.|+...+-....-
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~y----------e~El~~ar~~l~e~------ 104 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKY----------EAELATARKLLDET------ 104 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHh----------hhhHHHHHHHHHHH------
Confidence 5677778888888888999999999999988888744211 222221 12333333322221
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 000499 613 RVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEK 692 (1460)
Q Consensus 613 ~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mek 692 (1460)
-.++..++.++..++++++.+-.++......+ .+.+..+.+.......+.-+.+....-...+-+.+. .
T Consensus 105 -~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~-------~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~---~ 173 (546)
T KOG0977|consen 105 -ARERAKLEIEITKLREELKELRKKLEKAEKER-------RGAREKLDDYLSRLSELEAEINTLKRRIKALEDELK---R 173 (546)
T ss_pred -HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH---H
Confidence 12444566777777788887777776554433 233444444444444444444333333333322221 2
Q ss_pred HHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHH-H-Hhh-hhhhhhhhhhhhh
Q 000499 693 LLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNEN-L-KKL-SDENNFLVNSLFD 769 (1460)
Q Consensus 693 LlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~-l-~~L-~Ekns~LE~slSd 769 (1460)
|--+|+-|...|-.+...+|.=+---.+++..|+.|..+...+...-..-|-++...-.+ + ... ..=...|-.++-|
T Consensus 174 Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~e 253 (546)
T KOG0977|consen 174 LKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIRE 253 (546)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHH
Confidence 333455555555555555555444455566666666666655544333333333222111 0 111 1112345555556
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHH
Q 000499 770 ANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQF 849 (1460)
Q Consensus 770 ~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~ 849 (1460)
+.++-+.-...-+.=-++.+-.+-....-.+++.+. -.+..++++.........|-.|.++++.-...+..+++.|++
T Consensus 254 iRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~--~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ 331 (546)
T KOG0977|consen 254 IRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANV--EQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEY 331 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccc--hhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHh
Confidence 666666655555443333333333333333333332 234566777778888888888888888888888888999999
Q ss_pred hHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000499 850 SLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLK 915 (1460)
Q Consensus 850 sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~~~AqieifiLq~~l~Dl~ 915 (1460)
+|.-+ .++.+.-+++.+.+|-.+.++|.-.-.+|+.=+|--+.=+.||-+-.+.|.--+
T Consensus 332 ql~e~-------~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLegee 390 (546)
T KOG0977|consen 332 QLDED-------QRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKLLEGEE 390 (546)
T ss_pred hhhhh-------hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHHhcccc
Confidence 98887 566788899999999999999999999999999999999999988888775433
No 74
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.16 E-value=0.056 Score=63.09 Aligned_cols=180 Identities=24% Similarity=0.293 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcC------------------CC
Q 000499 590 KNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVS------------------LN 651 (1460)
Q Consensus 590 k~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~------------------~~ 651 (1460)
+.|-..|..|-+.+..++.+++-..+.-.-|++++ .-.+.|..-|..-.+.-...+ ++
T Consensus 86 qsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL----~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (306)
T PF04849_consen 86 QSLLEQNQDLSERNEALEEQLGAALEQVEQLRHEL----SMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQ 161 (306)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcCcHhhhcccccCCCccccccccccccccchh
Confidence 66777777777888888888887777778888888 555666666643333222221 23
Q ss_pred ccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH-H--------------HHHHHHHHHHhhhhhhhhHhhhhHHH
Q 000499 652 PENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEI-M--------------EKLLEKNAVLENSLSDLNVELEGVRD 716 (1460)
Q Consensus 652 ~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~-m--------------ekLlEkns~LE~SLSdan~ELegLRe 716 (1460)
.+.++.++|.|+++|..|+.+.+.++.|...+=++=|. | -.|.++-+-=-.-...-.-|+-.|..
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls 241 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS 241 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999888877655433 1 12222222222222223333444444
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHH-------HHhhhhhhhhhhhhhhhhHHHHHHHHHH
Q 000499 717 KVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNEN-------LKKLSDENNFLVNSLFDANAEVEGLRAK 780 (1460)
Q Consensus 717 K~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~-------l~~L~Ekns~LE~slSd~n~ElE~lr~K 780 (1460)
.+.+|+.-|+.+ ..|...|..+|.++... +.+|.+||+..-.-|-+++.|+..+|.+
T Consensus 242 qivdlQ~r~k~~-------~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~ 305 (306)
T PF04849_consen 242 QIVDLQQRCKQL-------AAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRKR 305 (306)
T ss_pred HHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 444455444444 34455555665555433 5566666666666666666666666643
No 75
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.16 E-value=0.14 Score=63.16 Aligned_cols=106 Identities=13% Similarity=0.202 Sum_probs=46.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHH
Q 000499 230 ERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSN-LESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETE 308 (1460)
Q Consensus 230 ER~~kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~-LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~E 308 (1460)
++..+++.+|+.++..|..++.+-+.. +..++++.. ....+...+.+...+...+...+.++..++..+..+..+
T Consensus 174 ~~~~e~~~~i~~l~~~i~~l~~~i~~~----~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~ 249 (562)
T PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKTY----NKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMD 249 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445577777777777777776665421 111111111 012233333333333333444444555555555444433
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhHHHHHH
Q 000499 309 REANIRQYQQCLDKLSNMEKNISRAEADAVE 339 (1460)
Q Consensus 309 kea~LlqykqClE~Is~LE~~~s~aqeeak~ 339 (1460)
.+..--.++.+...+..++..+...+.....
T Consensus 250 i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~ 280 (562)
T PHA02562 250 IEDPSAALNKLNTAAAKIKSKIEQFQKVIKM 280 (562)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222334444444444444444444443
No 76
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.05 E-value=2.2 Score=56.13 Aligned_cols=330 Identities=18% Similarity=0.253 Sum_probs=203.7
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 234 KAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANI 313 (1460)
Q Consensus 234 kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~L 313 (1460)
.-..+|..|...+..|..||+.+...|...+.+--.||-+|...|.++.+-.+.-.-+....+.++..+..-+.|..+-+
T Consensus 269 ~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~ 348 (1200)
T KOG0964|consen 269 DLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIE 348 (1200)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555666677899999999999999999999999999999887776666777788888888888888888888
Q ss_pred HHHHHHHHHHHhHHHHHhHhHHHHHHHH-------------HHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHH
Q 000499 314 RQYQQCLDKLSNMEKNISRAEADAVELS-------------DRASKAEIEAQTLKLDLARIE-------AEKEAAVVKYE 373 (1460)
Q Consensus 314 lqykqClE~Is~LE~~~s~aqeeak~ln-------------eRa~~AE~E~~~LKqel~~l~-------~EKEa~~lqyq 373 (1460)
-.|+.-+++=+.+-..+..++...+.+. +|=+=...++..|+.-+.... .|-+.+.-.|.
T Consensus 349 Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~ 428 (1200)
T KOG0964|consen 349 PKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELK 428 (1200)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 8888888877777777777777555443 222223333333333322221 12222222233
Q ss_pred HHHHHHHHHHhhh-------hhhhHhHHHHHHH---------------------HHHHHHHHHHHHHH------------
Q 000499 374 ECSRMISALEDKL-------LHSEEDSKRINKV---------------------ADKAESEVERLKQA------------ 413 (1460)
Q Consensus 374 QcLE~IS~LE~ki-------~~aee~~~~ln~~---------------------~e~~e~ev~~Lk~~------------ 413 (1460)
.-++.|-.|+..| ..+....-.++.. +.+++..+..-++.
T Consensus 429 ~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nG 508 (1200)
T KOG0964|consen 429 EKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVANG 508 (1200)
T ss_pred HHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence 3333333333322 2222222222222 22222222222221
Q ss_pred --------------------------------------------------------------------------------
Q 000499 414 -------------------------------------------------------------------------------- 413 (1460)
Q Consensus 414 -------------------------------------------------------------------------------- 413 (1460)
T Consensus 509 i~~v~~I~e~~k~ngv~G~v~eL~~v~~~f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~r~ 588 (1200)
T KOG0964|consen 509 IDSVRKIKEELKPNGVFGTVYELIKVPNKFKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKARD 588 (1200)
T ss_pred hHHHHHHHHHhcccccceehhhhhcCCHHHHhHHhhhcccceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCchhh
Confidence
Q ss_pred -----------------------------------HhhHH-----------------------------------HHHHH
Q 000499 414 -----------------------------------LGKLT-----------------------------------EEKEA 423 (1460)
Q Consensus 414 -----------------------------------l~~L~-----------------------------------eekea 423 (1460)
|..|. ...=.
T Consensus 589 v~yp~~sdaiPli~kl~y~p~fdka~k~Vfgktivcrdl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~krsrLe 668 (1200)
T KOG0964|consen 589 VEYPKDSDAIPLISKLRYEPQFDKALKHVFGKTIVCRDLEQALRLAKKHELNCITLSGDQVSKKGVLTGGYEDQKRSRLE 668 (1200)
T ss_pred ccCCCCCCccchHHHhCcchhhHHHHHHHhCceEEeccHHHHHHHHHhcCCCeEEeccceecccCCccccchhhhhhHHH
Confidence 00000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHH
Q 000499 424 LALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQK 503 (1460)
Q Consensus 424 l~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~ 503 (1460)
++-........+..|+..+.....++++...+|+..+..+..+|.+........-.+..++-.+.+...+....+..+..
T Consensus 669 ~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~ 748 (1200)
T KOG0964|consen 669 LLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGK 748 (1200)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHH
Confidence 11222233444555555555566666666667777777777777777777777778888888888888888888889999
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHh
Q 000499 504 ELGRLWTCIQEE--RLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQS 563 (1460)
Q Consensus 504 Ei~~Lq~slq~E--~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~ 563 (1460)
.++.+..+++.- .....+++-.-..+-.|...-++.+.+|..+|..+..++.-+-...-+
T Consensus 749 ~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~ 810 (1200)
T KOG0964|consen 749 ELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERID 810 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999998888874 344455555444445666666899999999999998888755444333
No 77
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.99 E-value=2.3 Score=55.55 Aligned_cols=119 Identities=25% Similarity=0.252 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhh
Q 000499 690 MEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFD 769 (1460)
Q Consensus 690 mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd 769 (1460)
++++-....-|+-.|..++..++.++.+++..|..-..|+.+-.....=+..+-.||+.+.. .+..|+..+.+
T Consensus 598 lE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e-------~~e~le~~~~~ 670 (769)
T PF05911_consen 598 LEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKE-------SYESLETRLKD 670 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhH
Confidence 44554455677888899999999999999999999999999988888888889999999854 45556888889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHH
Q 000499 770 ANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKG 815 (1460)
Q Consensus 770 ~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~ 815 (1460)
+.+|+..++.|+..|++-+...+..+..+.+.-..|.-|+......
T Consensus 671 ~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~ 716 (769)
T PF05911_consen 671 LEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKE 716 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999888888777888777776533
No 78
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.98 E-value=0.097 Score=57.52 Aligned_cols=187 Identities=20% Similarity=0.278 Sum_probs=98.7
Q ss_pred hHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Q 000499 458 NGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQ 537 (1460)
Q Consensus 458 ~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQ 537 (1460)
++..-+.+++..+..|..+|.+|+...+.+.+-.+.+..++......+..+|..++
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~------------------------ 60 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQ------------------------ 60 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------
Confidence 34445556666666666666666666666666665555555444444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 000499 538 DELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQR 617 (1460)
Q Consensus 538 eE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek 617 (1460)
..+++..|++.++..++.++-.+..|...-+.+..|+..| ..-|..||+|+.++..-..++..-..-=..++
T Consensus 61 -~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L-------~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~ 132 (193)
T PF14662_consen 61 -KAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSL-------VAEIETLQEENGKLLAERDGLKKRSKELATEK 132 (193)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhh
Confidence 2344555666666666666666666555555554444433 33477888888888776666554443223566
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHH
Q 000499 618 NALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIM 690 (1460)
Q Consensus 618 ~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~m 690 (1460)
.+||..+|.-..-+..-+. +. +.. -..+.+|---+....-....++.||.-|-++|..|
T Consensus 133 ~~Lq~Ql~~~e~l~~~~da----~l---~e~-------t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 133 ATLQRQLCEFESLICQRDA----IL---SER-------TQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHHHHHHHHHHHHHHHH----HH---HHH-------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6777776444333322221 11 111 11233333333334444455566666666776443
No 79
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.92 E-value=2.3 Score=54.40 Aligned_cols=117 Identities=21% Similarity=0.233 Sum_probs=71.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhH-HhhhhhHHHHHhHH----H
Q 000499 407 VERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLH-------SELDNG-FAKLKGAEEKCLLL----E 474 (1460)
Q Consensus 407 v~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~-------~Ei~~~-~~kL~~lE~~~~~L----E 474 (1460)
-+.|..+|..|+++.++++.-.+-+.-.+.+|..-+.=+.+++.+=- .+-... ...|+--=++++.| .
T Consensus 244 r~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLk 323 (739)
T PF07111_consen 244 REELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLK 323 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36677778888888888777777777777777766666665554421 111111 12222222233322 3
Q ss_pred HhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 475 RSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQT 528 (1460)
Q Consensus 475 ~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~ 528 (1460)
..--........+..+++.+..++.....+-.-|+.+++| -.|+..+..
T Consensus 324 aQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqD-----K~AElevER 372 (739)
T PF07111_consen 324 AQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQD-----KAAELEVER 372 (739)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHH
Confidence 3333344455667777878888888888888888888888 556555544
No 80
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.70 E-value=3.2 Score=52.87 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHhhhhhHHHHHhHH
Q 000499 424 LALQYQQCLEAISILEHKLARAEEEAQR----LHSELDNGFAKLKGAEEKCLLL 473 (1460)
Q Consensus 424 l~l~~qq~~~kI~~LE~els~sQEEv~R----L~~Ei~~~~~kL~~lE~~~~~L 473 (1460)
+..+-+-++..+.+|-..++.+.-.+-| ++-||..+..+|..+|.+|..|
T Consensus 578 ar~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel 631 (961)
T KOG4673|consen 578 ARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEEL 631 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455667777777777765544433 7899999999999999998865
No 81
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.67 E-value=0.57 Score=51.76 Aligned_cols=165 Identities=24% Similarity=0.369 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHhhcCCCccchhhhHHHHHH
Q 000499 588 SIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNK---KHQAMVEQVESVSLNPENFGLSVKELQD 664 (1460)
Q Consensus 588 sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~---k~~~l~e~l~~l~~~~e~~~~~VkeLQ~ 664 (1460)
+|.+|+.-+.+|.+.+.+|...|..--+....|..++..++..+..+.. .+.++.+++ +.++..++.|++
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEl-------edLk~~~~~lEE 81 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEEL-------EDLKTLAKSLEE 81 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 5777777777777777777777775555566677777666666665542 334455555 444778888888
Q ss_pred HhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHH----------HHHHHHHhhhh
Q 000499 665 ENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEE----------VCQNLLAEKST 734 (1460)
Q Consensus 665 ~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEe----------sc~sL~~eKS~ 734 (1460)
.+.+|...+.....|.-.|+.+++.++ ++| --+.++.+|+..+++.|-. .|.+|...+..
T Consensus 82 ~~~~L~aq~rqlEkE~q~L~~~i~~Lq---een-------~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da 151 (193)
T PF14662_consen 82 ENRSLLAQARQLEKEQQSLVAEIETLQ---EEN-------GKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDA 151 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-------hHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888877666543 222 2334555555555555522 24445555666
Q ss_pred hhhhHHHHHhhhhHHHHH----HHhhhhhhhhhhhhhhh
Q 000499 735 LVAEKNSLFSQLQDVNEN----LKKLSDENNFLVNSLFD 769 (1460)
Q Consensus 735 L~sEK~~LvSQLq~~~~~----l~~L~Ekns~LE~slSd 769 (1460)
+++||..-+.+|..+-+- -..|--+.+.||..++.
T Consensus 152 ~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q 190 (193)
T PF14662_consen 152 ILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQ 190 (193)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666655555543222 22344444445544443
No 82
>PRK11637 AmiB activator; Provisional
Probab=96.66 E-value=1.4 Score=53.74 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhH
Q 000499 404 ESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGA 466 (1460)
Q Consensus 404 e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~l 466 (1460)
......|......+......+.....+.......|+....+.+..+.+|..++......+..+
T Consensus 176 ~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l 238 (428)
T PRK11637 176 KQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSEL 238 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444455555555555555555555666666666666666655555544444443
No 83
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.63 E-value=3.3 Score=52.09 Aligned_cols=225 Identities=17% Similarity=0.183 Sum_probs=112.2
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHH---------HHHH-HHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHH
Q 000499 232 MGKAEMEILTLKNALAKLEAEKEAGLLQYR---------QSLE-RLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEA 301 (1460)
Q Consensus 232 ~~kAe~EI~~Lkk~i~~LqtEKE~~~~qY~---------~sle-k~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~ 301 (1460)
..+-+.....+-++|..|++.-+...-+|+ .+++ ++..|.+.+++.|.-+.++..+-...+..+..++..
T Consensus 223 k~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~E 302 (581)
T KOG0995|consen 223 KHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSE 302 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344455555566666666666666666665 2333 333466666666666666666666666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH---hHhHHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000499 302 LARLETEREANIRQYQQCLDKLSNMEKNI---SRAEADAVELSD-------RASKAEIEAQTLKLDLARIEAEKEAAVVK 371 (1460)
Q Consensus 302 la~Lq~Ekea~LlqykqClE~Is~LE~~~---s~aqeeak~lne-------Ra~~AE~E~~~LKqel~~l~~EKEa~~lq 371 (1460)
+...+.|.++-- .....|.+++ .-+-+|++..|. -++++..+...|.+++-.++-+.+
T Consensus 303 ie~kEeE~e~lq-------~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~----- 370 (581)
T KOG0995|consen 303 IEEKEEEIEKLQ-------KENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIE----- 370 (581)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----
Confidence 766666655432 2233333332 334455554442 233333333333333333332222
Q ss_pred HHHHHHHHHHHHhhhhhhhHhHHHHHHH-HHHHHH----------HHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 372 YEECSRMISALEDKLLHSEEDSKRINKV-ADKAES----------EVERLKQA-LGKLTEEKEALALQYQQCLEAISILE 439 (1460)
Q Consensus 372 yqQcLE~IS~LE~ki~~aee~~~~ln~~-~e~~e~----------ev~~Lk~~-l~~L~eekeal~l~~qq~~~kI~~LE 439 (1460)
..+..++.++.+...-++++.-. ++++.+ ..-.++.. .-.+.+..+....++.+.+.+..+|+
T Consensus 371 -----~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq 445 (581)
T KOG0995|consen 371 -----DFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQ 445 (581)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444555555544444444433 222211 00111111 12355666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHH
Q 000499 440 HKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLL 473 (1460)
Q Consensus 440 ~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~L 473 (1460)
.-++....-+.-+...+-...-.|+.++..|...
T Consensus 446 ~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~ 479 (581)
T KOG0995|consen 446 EHFSNKASTIEEKIQILGEIELELKKAESKYELK 479 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555555554444444444455555554443
No 84
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.62 E-value=5.3 Score=54.45 Aligned_cols=39 Identities=23% Similarity=0.199 Sum_probs=30.0
Q ss_pred HHHHhHhhhhhhhhhhhhHHHHhhhhHHhhhhhhhhhhh
Q 000499 1107 AQQSLQDQNCKVLDEKKSLMKKVLDLQEEKHSLEEENCV 1145 (1460)
Q Consensus 1107 s~~~lq~e~~~~~~e~~sL~k~~~~l~e~~~~lEden~~ 1145 (1460)
++..++.|-.++.++...+.+.+..+.-+.-..+.+++-
T Consensus 820 t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~ 858 (1294)
T KOG0962|consen 820 TVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISR 858 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888888887777766666665
No 85
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=2 Score=55.47 Aligned_cols=89 Identities=17% Similarity=0.116 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 000499 542 SLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQ 621 (1460)
Q Consensus 542 ~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq 621 (1460)
.++.+.....++|..+..+-+...+.|..+.|.+..|..+--|+.+++-=.+-+. .+++-+..-...|++.++
T Consensus 845 ~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qadse~l~ka~~~~k~-------~nl~lki~s~kqeqee~~ 917 (970)
T KOG0946|consen 845 NLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADSETLSKALKTVKS-------ENLSLKIVSNKQEQEELL 917 (970)
T ss_pred chhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcchHHHHHHHHhhc-------ccchhcccchhhhHHHHH
Confidence 3666677777777777766667777777777777777777666654443333333 233333333445666666
Q ss_pred HHHHhhHHHHHHHHHH
Q 000499 622 QEIYCLKEELNELNKK 637 (1460)
Q Consensus 622 ~el~~lkee~~~Ln~k 637 (1460)
-.++.+++.|..|-+.
T Consensus 918 v~~~~~~~~i~alk~~ 933 (970)
T KOG0946|consen 918 VLLADQKEKIQALKEA 933 (970)
T ss_pred HHHhhHHHHHHHHHHH
Confidence 6666666655555443
No 86
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.42 Score=61.25 Aligned_cols=88 Identities=13% Similarity=0.166 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHH
Q 000499 420 EKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELD----------NGFAKLKGAEEKCLLLERSNQTLHSELESMVQ 489 (1460)
Q Consensus 420 ekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~----------~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~e 489 (1460)
...+|..+..++.+++...-+.|++-..++.-|+..+. .|.+.+++. ..++.++..|...+..
T Consensus 679 ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~-------~eel~a~~~e~k~l~~ 751 (970)
T KOG0946|consen 679 MEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQ-------NEELNAALSENKKLEN 751 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCC-------hHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444443 333333332 3446666677777776
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHH
Q 000499 490 KMGSQSQELTEKQKELGRLWTCIQE 514 (1460)
Q Consensus 490 kl~~~~qeL~eK~~Ei~~Lq~slq~ 514 (1460)
..--+..+|+.+..-++..+....+
T Consensus 752 ~q~~l~~~L~k~~~~~es~k~~~~~ 776 (970)
T KOG0946|consen 752 DQELLTKELNKKNADIESFKATQRS 776 (970)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 6656677777777777777777664
No 87
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.45 E-value=4.6 Score=51.70 Aligned_cols=85 Identities=19% Similarity=0.218 Sum_probs=55.1
Q ss_pred cccccCCCccchhhhhhhhhcccccccccCCChhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 196 GRARKGLNFHDAEENEQLQHNESYDIKARVPSESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVS 275 (1460)
Q Consensus 196 ~~~~~~l~f~~~~~e~s~l~~e~~~~~~~~~sesER~~kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is 275 (1460)
++..+|..|...+..-.-........+...-++..+..+.+.|++.|++.|-.+.++-+...-.+...-..+..++.++.
T Consensus 287 ~~~~k~s~f~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~ 366 (594)
T PF05667_consen 287 EAWDKGSRFTHSEKPQEAAPAAAVVPPKEKETEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELE 366 (594)
T ss_pred cccccccccccccchhhhhhccccCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466777755544111111112333444445566678889999999999998888888888777777777777777776
Q ss_pred HHhhh
Q 000499 276 HARED 280 (1460)
Q Consensus 276 ~aQ~~ 280 (1460)
.++..
T Consensus 367 ~~~~~ 371 (594)
T PF05667_consen 367 EKEAE 371 (594)
T ss_pred HHHHH
Confidence 65544
No 88
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.36 E-value=5.3 Score=51.37 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=20.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000499 242 LKNALAKLEAEKEAGLLQYRQSLERLS 268 (1460)
Q Consensus 242 Lkk~i~~LqtEKE~~~~qY~~slek~~ 268 (1460)
|++.|-.|++|+|...-+|+.-..+++
T Consensus 2 l~e~l~qlq~Erd~ya~~lk~e~a~~q 28 (617)
T PF15070_consen 2 LMESLKQLQAERDQYAQQLKEESAQWQ 28 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999997777776655443
No 89
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.32 E-value=0.75 Score=52.50 Aligned_cols=147 Identities=25% Similarity=0.336 Sum_probs=91.6
Q ss_pred HHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHH
Q 000499 323 LSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADK 402 (1460)
Q Consensus 323 Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~ 402 (1460)
|+.|-....+.....+....-..++..+...++..+..++.+.+ .++.+|+..+.+.+.+++++++
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e--------------~le~qv~~~e~ei~~~r~r~~~ 77 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELE--------------DLENQVSQLESEIQEIRERIKR 77 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444445555556666666666555554444 3455666666666666666666
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHH
Q 000499 403 AESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHS 482 (1460)
Q Consensus 403 ~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~s 482 (1460)
++..+...+.. .+..++.-.++.....+.+|+.++....+++..|..+|.....++...|......+ ..+-.
T Consensus 78 ~e~kl~~v~~~-----~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~---~~~e~ 149 (239)
T COG1579 78 AEEKLSAVKDE-----RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE---ARLEE 149 (239)
T ss_pred HHHHHhccccH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 66665433332 45566777777778888888888888888888888888888888888777755543 33344
Q ss_pred HHHHHHHHh
Q 000499 483 ELESMVQKM 491 (1460)
Q Consensus 483 E~e~L~ekl 491 (1460)
+..++.+..
T Consensus 150 e~~~i~e~~ 158 (239)
T COG1579 150 EVAEIREEG 158 (239)
T ss_pred HHHHHHHHH
Confidence 444444433
No 90
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.10 E-value=5.5 Score=49.09 Aligned_cols=283 Identities=20% Similarity=0.212 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhh
Q 000499 398 KVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSN 477 (1460)
Q Consensus 398 ~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~ 477 (1460)
+-+..++.+-.+|+....++..-.-+|....+.-..+|..|..++-...++++.|+.-++.+...+..
T Consensus 295 ~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~k------------ 362 (622)
T COG5185 295 QKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRK------------ 362 (622)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh------------
Confidence 33344455555555555555555556666666666777777777777777777777777777666532
Q ss_pred Hhh-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Q 000499 478 QTL-HSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKD 556 (1460)
Q Consensus 478 q~L-~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~ 556 (1460)
|+. -++-+.+++.--.++++|.-..-+++.|..++-+ +-.+|...+..|++.. -..++|+.+|-..
T Consensus 363 q~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~---~~leaq~~~~slek~~----~~~~sl~~~i~~~------ 429 (622)
T COG5185 363 QGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKS---RKLEAQGIFKSLEKTL----RQYDSLIQNITRS------ 429 (622)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHh---HHHHHHHHHHHHHHHH----HHHHHHHHHhccc------
Confidence 111 1233333333334556666666677777777665 3355556666654443 2234444444322
Q ss_pred hhhchHhHHHHHHHH--HHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHH-HHHHHHhhHHHHH
Q 000499 557 MGTRNQSLQEEVEKV--KEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQ-RNA-LQQEIYCLKEELN 632 (1460)
Q Consensus 557 le~~k~~L~eev~~l--~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~e-k~a-Lq~el~~lkee~~ 632 (1460)
+..+-..+... +--+.++++.+...--+|+.+-.|+..=-. +.++-++ |.. |+..+--++..+.
T Consensus 430 ----~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~--------~~~~~e~nksi~Lee~i~~~~~~i~ 497 (622)
T COG5185 430 ----RSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQ--------ERIKTEENKSITLEEDIKNLKHDIN 497 (622)
T ss_pred ----HHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHH--------HHHHHHhccceeHHHHhhhHHhHHH
Confidence 21111111111 011147788877665566655444332111 1112122 233 7888888888888
Q ss_pred HHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhHhh
Q 000499 633 ELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEK-LLEKNAVLENSLSDLNVEL 711 (1460)
Q Consensus 633 ~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mek-LlEkns~LE~SLSdan~EL 711 (1460)
.|+.++..+...|..+|. .|..++++-+ .|+.+---...-|++ |..=|-..-+|++++-.-+
T Consensus 498 El~~~l~~~e~~L~~a~s--------------~~~~~ke~~e---~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~v 560 (622)
T COG5185 498 ELTQILEKLELELSEANS--------------KFELSKEENE---RELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLV 560 (622)
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHhhH---HHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHH
Confidence 888888888887766643 2333333322 222222222222332 3333666677888888777
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhh
Q 000499 712 EGVRDKVKALEEVCQNLLAEKST 734 (1460)
Q Consensus 712 egLReK~K~LEesc~sL~~eKS~ 734 (1460)
...+-+.-.+--+|.-.+++..-
T Consensus 561 qs~~i~ld~~~~~~n~~r~~i~k 583 (622)
T COG5185 561 QSTEIKLDELKVDLNRKRYKIHK 583 (622)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Confidence 77777766665566555555443
No 91
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.08 E-value=7.1 Score=50.18 Aligned_cols=247 Identities=19% Similarity=0.175 Sum_probs=117.1
Q ss_pred HHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcc
Q 000499 753 LKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLG 832 (1460)
Q Consensus 753 l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~ 832 (1460)
+.++-+-++.+|.|..++..++.+. +.....+..+..+|++|+..-.+.+..-.++-+-+..++.+
T Consensus 442 V~~~~k~~~e~e~s~~~~~~~i~~~--------------k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~ 507 (716)
T KOG4593|consen 442 VQKVDKHSLEMEASMEELYREITGQ--------------KKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQ 507 (716)
T ss_pred HHHHHHhhHhhhhhhHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3344444555666655444444333 33333445666777777777777777777777766777777
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHhhh------hhhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHH
Q 000499 833 LEEEKESTLQKVEELQFSLDAEKQQHAS------FVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFI 906 (1460)
Q Consensus 833 lq~Ek~~~~~~veel~~sL~~e~q~h~~------~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~~~Aqieifi 906 (1460)
..++...+-.+=..+...+...|-.+.- .++++..-. +..+.....|..+++.|.. -
T Consensus 508 ~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt-------~~~~~~~k~~~e~LqaE~~----------~ 570 (716)
T KOG4593|consen 508 YLKELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPT-------SKARQIKKNRLEELQAELE----------R 570 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCch-------HHHHHHHHHHHHHHHHHHH----------H
Confidence 7777666555544444444444433321 111111111 1112222222222222222 2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhH-HHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHH-Hh-----
Q 000499 907 TQKYIQDLKEKNFSLLFECQKLLQESSLS-EKLIHKLENENCE----QQEEMRSLVDQIKVLRVQLYQLLEI-LE----- 975 (1460)
Q Consensus 907 Lq~~l~Dl~~kn~~ll~EcQk~~eas~~s-e~lIseLe~E~~~----~q~e~~~L~~~~~~Lr~gi~qv~k~-L~----- 975 (1460)
|..-+.++++-|....+. ..+..+..+ .+=|.+|+.++.. -+.=.+.....|.-+|+..+.++.- +.
T Consensus 571 lk~~l~~le~~~~~~~d~--~i~~~s~~~~~~ev~qlk~ev~s~ekr~~rlk~vF~~ki~eFr~ac~sL~Gykid~~~~s 648 (716)
T KOG4593|consen 571 LKERLTALEGDKMQFRDG--EIAVHSLLAFSKEVAQLKKEVESAEKRNQRLKEVFASKIQEFRDACYSLLGYKIDFTLES 648 (716)
T ss_pred HHHHHHHHhccCCcccch--hhHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 223333333332222111 112222222 1223333333332 1122345566778888888887765 32
Q ss_pred ---hcccCCCcchhhhhhhhHHHHHHHHhHHHHHHHHHHHhHhhhHHHHH-HHHHHHHHHHHHHHHH
Q 000499 976 ---IDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQNHQVVI-ENSILVALLGQLKLEA 1038 (1460)
Q Consensus 976 ---i~~~~g~~d~~~~e~~l~~~l~~i~~~i~~l~~s~~~~q~enq~~~v-EnsvL~t~L~ql~~e~ 1038 (1460)
|.+.+.++|... ++ +..=.|.+.-+.+-+..+.+.=.+.-+ .-+.+-.||.-|-+|.
T Consensus 649 ~~ritS~ya~~~~~~-~~-----~e~eS~s~~ll~n~~~~~~d~li~~~~~~~~siPaFlaaLTLEL 709 (716)
T KOG4593|consen 649 RYRLTSGYAEEPDDC-DI-----FENESGSLQLLENPYSHTFDPLIQVWCFARSSIPAFLAALTLEL 709 (716)
T ss_pred ceeeeeeccCCCchh-hh-----hcCccchhHhhcCCcccccchHhhhhhhcccCchHHHHHHHHHH
Confidence 333333333222 32 333344444455566666666555555 6666777777666553
No 92
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.07 E-value=2 Score=50.94 Aligned_cols=113 Identities=26% Similarity=0.262 Sum_probs=94.4
Q ss_pred hhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHH
Q 000499 737 AEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGL 816 (1460)
Q Consensus 737 sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l 816 (1460)
++...|..=|.-+.+.-..|......|=..|.++..+...||.++...+..+.....-+. ..++..|+.|++.++...
T Consensus 65 ~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~--~~ere~lV~qLEk~~~q~ 142 (319)
T PF09789_consen 65 KENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHF--PHEREDLVEQLEKLREQI 142 (319)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccccccc--chHHHHHHHHHHHHHHHH
Confidence 466777777777777788888888888888888899999999998888777765543333 399999999999999999
Q ss_pred HHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhH
Q 000499 817 KDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSL 851 (1460)
Q Consensus 817 ~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL 851 (1460)
..++..|--..|--.++-.|++..-+.+..||..|
T Consensus 143 ~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~EL 177 (319)
T PF09789_consen 143 EQLERDLQSLLDEKEELVTERDAYKCKAHRLNHEL 177 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888887666
No 93
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.04 E-value=9.5 Score=51.26 Aligned_cols=117 Identities=20% Similarity=0.231 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhHHHHHh----------HHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 000499 441 KLARAEEEAQRLHSELDNGFAKLKGAEEKCL----------LLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWT 510 (1460)
Q Consensus 441 els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~----------~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~ 510 (1460)
.+.-.=++|.-|..+|...+.+|.+++.-.. .|++.--...+..+.+...+ ..+.+-..+.+.-+.
T Consensus 1505 ~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~a----e~V~eaL~~Ad~Aq~ 1580 (1758)
T KOG0994|consen 1505 ELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQA----EDVVEALEEADVAQG 1580 (1758)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3444567889999999999999999987321 23322222233333333333 222222223332222
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHH
Q 000499 511 CIQEERLRFVE-AETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQ 565 (1460)
Q Consensus 511 slq~E~~k~~E-aE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~ 565 (1460)
..++ .++ |.+.+..-+.+..+.|++..+-..-.....+.|.+++..-..|+
T Consensus 1581 ~a~~----ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1581 EAQD----AIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELK 1632 (1758)
T ss_pred HHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 222 22222233556666666665555555555555555555444443
No 94
>PRK11637 AmiB activator; Provisional
Probab=95.97 E-value=5.9 Score=48.36 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000499 315 QYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARI 361 (1460)
Q Consensus 315 qykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l 361 (1460)
++.....+|..++..+...+.+...+..++..++.++...+..+...
T Consensus 83 qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 83 AISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555555555555555555444
No 95
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.97 E-value=3.6 Score=45.84 Aligned_cols=196 Identities=30% Similarity=0.374 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000499 291 AEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVV 370 (1460)
Q Consensus 291 ae~E~~sLk~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~l 370 (1460)
|++++.+++..+..++.+.+.+--.|.-..+++...+.---.+.--.+.+..|+.+-+.++..+...+..-.-=.+.+--
T Consensus 2 ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adr 81 (205)
T KOG1003|consen 2 AEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADR 81 (205)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888988999988888888888888876666666566666677778888887777766554333211111111
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 371 KYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQ 450 (1460)
Q Consensus 371 qyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~ 450 (1460)
.|..-..+ +...+.++.+.-++++-+++.+..|...+.-+.....++... +..+++.-+
T Consensus 82 K~eEVark-------L~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~-----------ee~~~q~~d--- 140 (205)
T KOG1003|consen 82 KYEEVARK-------LVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAK-----------EEKLEQKEE--- 140 (205)
T ss_pred HHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH-----------HHHHhhhHH---
Confidence 13322222 333344444444555566666666665544443333333322 333333222
Q ss_pred HHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 000499 451 RLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGR 507 (1460)
Q Consensus 451 RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~ 507 (1460)
....+|.....||+.+|.+.--.|++.+.|..+-+.+..++....-+-...+.+++.
T Consensus 141 ~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~ 197 (205)
T KOG1003|consen 141 KYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDE 197 (205)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 233445555669999999999999999999999999988884433333334444443
No 96
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.92 E-value=7.7 Score=49.28 Aligned_cols=257 Identities=18% Similarity=0.271 Sum_probs=116.7
Q ss_pred HHHHHHhhhhhhhHhHHHHHHHHH-----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 378 MISALEDKLLHSEEDSKRINKVAD-----KAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRL 452 (1460)
Q Consensus 378 ~IS~LE~ki~~aee~~~~ln~~~e-----~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL 452 (1460)
.+..||..+..++........... .|+.-+..++..+..|+.-++.+=.-|..|...+-..=.++.. -.
T Consensus 162 a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~---gy--- 235 (560)
T PF06160_consen 162 AIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKE---GY--- 235 (560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHH---HH---
Confidence 455567777777777776665433 4455666666666666665555444444433322211111111 01
Q ss_pred HHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 453 HSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMG-----SQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQ 527 (1460)
Q Consensus 453 ~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~-----~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~ 527 (1460)
.++....-.|..+ .++.....++..+......+. .-...+.....+|+.|-..++.|..-+-..+..+.
T Consensus 236 -~~m~~~gy~l~~~-----~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~ 309 (560)
T PF06160_consen 236 -REMEEEGYYLEHL-----DIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLK 309 (560)
T ss_pred -HHHHHCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 1111101111110 011112222222222222221 12344566777888888888888776666666777
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHHHH--HHHhh-hchHhHHHHHHHHHHHhc----cCcccccccHHHHHHHHHHHHHHH
Q 000499 528 TLQHLHSQSQDELRSLAAELQNRAQI--LKDMG-TRNQSLQEEVEKVKEENK----GLNELNLSSAESIKNLQDEILSLR 600 (1460)
Q Consensus 528 ~Lq~LhSqSQeE~~~L~~Ei~~~~~~--L~~le-~~k~~L~eev~~l~EEn~----~L~e~n~SS~~sIk~LQdEi~~Lk 600 (1460)
.+.....+..+..+.|..|+..+.+. |++-+ .....+...+..+..... .+.....+.+ .++.+...+.
T Consensus 310 ~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS----~i~~~l~~~~ 385 (560)
T PF06160_consen 310 ELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYS----EIQEELEEIE 385 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHH----HHHHHHHHHH
Confidence 76666666666667777777766442 22111 122233333333322222 1222222222 2222333333
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCC
Q 000499 601 ETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSL 650 (1460)
Q Consensus 601 E~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~ 650 (1460)
+.+..++.+..--.+.-..|..+=..-++.+..+......+...|...|+
T Consensus 386 ~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nL 435 (560)
T PF06160_consen 386 EQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNL 435 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33333333222222333344444444455566666666666666665555
No 97
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.92 E-value=2.6 Score=46.83 Aligned_cols=133 Identities=27% Similarity=0.314 Sum_probs=78.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHH
Q 000499 410 LKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQ 489 (1460)
Q Consensus 410 Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~e 489 (1460)
|-+-|..-.++...+..++...-++..+++..+.....++.++..++..+.... .+..+.|+ ..|...++.+..
T Consensus 59 Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~----~dknL~eR--eeL~~kL~~~~~ 132 (194)
T PF15619_consen 59 LPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLS----EDKNLAER--EELQRKLSQLEQ 132 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCchhH--HHHHHHHHHHHH
Confidence 334455566777777777777888888888888888888888888766543332 22222221 333444444444
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhh
Q 000499 490 KMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMG 558 (1460)
Q Consensus 490 kl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le 558 (1460)
++...+..+......++-...++.- .+..-..-++..+.++..|..||+.+.++|.+-+
T Consensus 133 ~l~~~~~ki~~Lek~leL~~k~~~r----------ql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 133 KLQEKEKKIQELEKQLELENKSFRR----------QLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4433333333333333333333322 2334455667778888899999999998887654
No 98
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.89 E-value=7.7 Score=48.99 Aligned_cols=100 Identities=15% Similarity=0.166 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHH
Q 000499 601 ETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEK 680 (1460)
Q Consensus 601 E~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK 680 (1460)
+.+.-...+..-...++..||..+..+...+..+....-.+..++..+ .+.+...+++ ...|.
T Consensus 425 el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~--------------~~~~~~~k~e---~eee~ 487 (581)
T KOG0995|consen 425 ELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKA--------------ESKYELKKEE---AEEEW 487 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH---HHHHH
Confidence 333333344444455666777777666666665555555554444333 2222222211 11111
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhhhhhhhhHhhhhHHHH
Q 000499 681 VALLEKLEIME-KLLEKNAVLENSLSDLNVELEGVRDK 717 (1460)
Q Consensus 681 ~~L~~kLq~me-kLlEkns~LE~SLSdan~ELegLReK 717 (1460)
.+--..+..|+ .|.-.+..+.++++++-..+...+-.
T Consensus 488 ~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~e 525 (581)
T KOG0995|consen 488 KKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELE 525 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222332 35666778888888887666655544
No 99
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.73 E-value=6.2 Score=46.73 Aligned_cols=95 Identities=16% Similarity=0.201 Sum_probs=70.8
Q ss_pred HHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 379 ISALEDKLLHSEEDSKRINKVADKAESEVERLKQ-------ALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQR 451 (1460)
Q Consensus 379 IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~-------~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~R 451 (1460)
+-..+-++..++.-....+..+.........++. .|..+...--.+..++.--.+|...++.-++.|.+=+..
T Consensus 162 ~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~t 241 (309)
T PF09728_consen 162 LKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFET 241 (309)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3333444444444444555544455555566666 666666666678888888899999999999999999999
Q ss_pred HHHHHHhHHhhhhhHHHHHhHH
Q 000499 452 LHSELDNGFAKLKGAEEKCLLL 473 (1460)
Q Consensus 452 L~~Ei~~~~~kL~~lE~~~~~L 473 (1460)
.+.||+....+.+.+|..+..+
T Consensus 242 fk~Emekm~Kk~kklEKE~~~~ 263 (309)
T PF09728_consen 242 FKKEMEKMSKKIKKLEKENQTW 263 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887665
No 100
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.65 E-value=6.6 Score=46.49 Aligned_cols=22 Identities=41% Similarity=0.736 Sum_probs=13.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH
Q 000499 709 VELEGVRDKVKALEEVCQNLLA 730 (1460)
Q Consensus 709 ~ELegLReK~K~LEesc~sL~~ 730 (1460)
.+++.++.++..||..|..|..
T Consensus 286 ~~~~~~~~k~~kLe~LcRaLQ~ 307 (309)
T PF09728_consen 286 KELEKLKKKIEKLEKLCRALQA 307 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3466666666667777766653
No 101
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.39 E-value=3.6 Score=45.86 Aligned_cols=68 Identities=26% Similarity=0.332 Sum_probs=55.6
Q ss_pred chhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHH
Q 000499 654 NFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEI-----MEKLLEKNAVLENSLSDLNVELEGVRDKVKAL 721 (1460)
Q Consensus 654 ~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~-----mekLlEkns~LE~SLSdan~ELegLReK~K~L 721 (1460)
.....+++|.-++..|..-+.....|++.|..+... .+|.-.+|.+||+-|..+...||.--..+...
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~ev 169 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEV 169 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578888999999999999999999999988876 46888899999999999998777655544433
No 102
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.38 E-value=1.7 Score=46.06 Aligned_cols=55 Identities=29% Similarity=0.342 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHh
Q 000499 430 QCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKM 491 (1460)
Q Consensus 430 q~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl 491 (1460)
++..+|..||.++-.+..-+ .....+|..+......+|+..+.|..+......++
T Consensus 77 ~l~rriq~LEeele~ae~~L-------~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ 131 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKL-------KETTEKLREADVKAEHFERKVKALEQERDQWEEKY 131 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHH
Confidence 44445555555554444433 33455566666666666666666666777776666
No 103
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.26 E-value=3.6 Score=53.50 Aligned_cols=234 Identities=22% Similarity=0.248 Sum_probs=122.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHH
Q 000499 408 ERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESM 487 (1460)
Q Consensus 408 ~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L 487 (1460)
..|..+|.+|+.+..++...=+++...|..+.+--.....++..|+.+.+.+..|+..+. .+.+.=+.-++.+
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~-------~aRq~DKq~l~~L 493 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLV-------QARQQDKQSLQQL 493 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 356666666666677766666677777777776555666666666666665555555543 2233323333333
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH------hhh-ccHHHHHHHHHHHHHHHHHHHHhhh
Q 000499 488 VQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAE-TAFQTLQH------LHS-QSQDELRSLAAELQNRAQILKDMGT 559 (1460)
Q Consensus 488 ~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE-~aL~~Lq~------LhS-qSQeE~~~L~~Ei~~~~~~L~~le~ 559 (1460)
..+ |.+.+.-=..+...+.+|+....++| ++-..+.. -.+ ......+-|-.|+.++...|+.-+.
T Consensus 494 Ekr-------L~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee 566 (697)
T PF09726_consen 494 EKR-------LAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEE 566 (697)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 33333334455566666654444433 33322100 011 1233445566666666666666666
Q ss_pred chHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhhhhHHHHHHHHH
Q 000499 560 RNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLE--------------AEVELRVDQRNALQQEIY 625 (1460)
Q Consensus 560 ~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe--------------~Ev~~~~~ek~aLq~el~ 625 (1460)
....++.+++.+..-. .| +..-+..|...+..+++....|| .-+|--..+-+.++..+.
T Consensus 567 ~~~~~e~~~~~lr~~~---~e----~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~ 639 (697)
T PF09726_consen 567 QIRELESELQELRKYE---KE----SEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLR 639 (697)
T ss_pred HHHHHHHHHHHHHHHH---hh----hhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666664432211 11 00112333333333433333333 223333566677777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh----cCCCccchhhhHHHH
Q 000499 626 CLKEELNELNKKHQAMVEQVES----VSLNPENFGLSVKEL 662 (1460)
Q Consensus 626 ~lkee~~~Ln~k~~~l~e~l~~----l~~~~e~~~~~VkeL 662 (1460)
....||.+|..|...++.=|-+ .++.|-+-+.+++=|
T Consensus 640 ~~d~ei~~lk~ki~~~~av~p~~~~~~~~~~~~~~~~~~~~ 680 (697)
T PF09726_consen 640 KKDKEIEELKAKIAQLLAVMPSDSYCSAITPPTPHYSSKFL 680 (697)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccccCCCCCCccchhhhc
Confidence 7888888888877666655544 234555555555433
No 104
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.25 E-value=2.5 Score=48.45 Aligned_cols=61 Identities=23% Similarity=0.378 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 000499 295 VQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLK 355 (1460)
Q Consensus 295 ~~sLk~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LK 355 (1460)
+..-..++.++++++++..-.|--=...+-++++++++-+.+...+++|.++++.+..+-+
T Consensus 26 ~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~ 86 (239)
T COG1579 26 IKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVK 86 (239)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3344455555566666665555555566777888888888888888888888887775544
No 105
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.25 E-value=2.2 Score=45.22 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000499 304 RLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEA 363 (1460)
Q Consensus 304 ~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~ 363 (1460)
.|..|++.+.-.+..|..++-.|+........++..++.+...++.++..+...+.....
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~ 63 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKE 63 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778777777777777777777777777777777777777777776666666543
No 106
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.13 E-value=4.4 Score=52.75 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=33.0
Q ss_pred HHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 474 ERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQT 528 (1460)
Q Consensus 474 E~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~ 528 (1460)
-.+++.++-+.+.|.-|+..+.+....-..-+..|..-+.+|+..+..+|..|..
T Consensus 459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~e 513 (697)
T PF09726_consen 459 KSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQE 513 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666665555555555555666666666666666666666655
No 107
>PLN02939 transferase, transferring glycosyl groups
Probab=95.09 E-value=6.6 Score=52.62 Aligned_cols=126 Identities=27% Similarity=0.305 Sum_probs=77.7
Q ss_pred hhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhh---------------hhHHHHHH
Q 000499 655 FGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVEL---------------EGVRDKVK 719 (1460)
Q Consensus 655 ~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~EL---------------egLReK~K 719 (1460)
+..-+..|.++|..||.....++.+=....+-=.-+-+|-.+.++|+.||.++...+ |.+-+|+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVE 303 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHH
Confidence 344555677788888887777665432222211113345556888888888776654 44555555
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHH------HHHHHHHHHHHHHHHHh
Q 000499 720 ALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEV------EGLRAKSKSLEDSCLLL 791 (1460)
Q Consensus 720 ~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~El------E~lr~K~k~lEes~~~l 791 (1460)
.|+... ++-+.+.|+++++.|-. ++|..|...||.||-.+|+.. +-++.|+|-+++.++.-
T Consensus 304 ~~~~~~-----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (977)
T PLN02939 304 NLQDLL-----DRATNQVEKAALVLDQN------QDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQAS 370 (977)
T ss_pred HHHHHH-----HHHHHHHHHHHHHhccc------hHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 554332 34566788888886544 467777778888888887754 44556666666665544
No 108
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.05 E-value=0.087 Score=57.60 Aligned_cols=117 Identities=27% Similarity=0.330 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000499 716 DKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEK 795 (1460)
Q Consensus 716 eK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~ 795 (1460)
..+.+++..+-.+..|...+.-.|+-+..+|-.++..++.+..+.+.....+..+..++..++.+++++++.+......+
T Consensus 67 ~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 67 AQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcc
Q 000499 796 SCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLG 832 (1460)
Q Consensus 796 s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~ 832 (1460)
..+.+|...|--|+..+.+++..+++++.+|.+|...
T Consensus 147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 147 EILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888754
No 109
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.88 E-value=13 Score=45.25 Aligned_cols=180 Identities=15% Similarity=0.212 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000499 342 DRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEK 421 (1460)
Q Consensus 342 eRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eek 421 (1460)
..-..++.|-+.-.+|+.+...|++.+. +....+-....+|+.+..++..+.-++...+..|-....+++..+
T Consensus 95 ~~k~~~e~er~~~~~El~~~r~e~~~v~-------~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~ 167 (499)
T COG4372 95 GEKRAAETEREAARSELQKARQEREAVR-------QELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQA 167 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334466667777777777777777664 233444555667888888888888888999988888888999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHH
Q 000499 422 EALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEK 501 (1460)
Q Consensus 422 eal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK 501 (1460)
+++..+..++-.....|.......-....+...+-..+..+ -+..+.++.+.+....-.+...++++..+..+.++
T Consensus 168 qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r----~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~ 243 (499)
T COG4372 168 QSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATR----ANAAQARTEELARRAAAAQQTAQAIQQRDAQISQK 243 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777766665444433333332222222222222222222 22333456667777777777888887778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000499 502 QKELGRLWTCIQEERLRFVEAETAFQTLQHL 532 (1460)
Q Consensus 502 ~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~L 532 (1460)
-.+|..--..|.+-..+.-..|++...++..
T Consensus 244 ~q~iaar~e~I~~re~~lq~lEt~q~~leqe 274 (499)
T COG4372 244 AQQIAARAEQIRERERQLQRLETAQARLEQE 274 (499)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877777777666666666666665433
No 110
>PLN02939 transferase, transferring glycosyl groups
Probab=94.82 E-value=5.7 Score=53.21 Aligned_cols=143 Identities=33% Similarity=0.367 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000499 563 SLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMV 642 (1460)
Q Consensus 563 ~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~ 642 (1460)
.|-.++..+++||-.|.. .|.-|..+++..+++-+.+ -.|..+-+-+...+..|..+.-.--
T Consensus 223 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (977)
T PLN02939 223 SLSKELDVLKEENMLLKD-------DIQFLKAELIEVAETEERV-----------FKLEKERSLLDASLRELESKFIVAQ 284 (977)
T ss_pred cHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHhhhHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455555555555544433 3555555666555544432 2355556666677777777775444
Q ss_pred HHHhhc-CCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh------hhhHH
Q 000499 643 EQVESV-SLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVE------LEGVR 715 (1460)
Q Consensus 643 e~l~~l-~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~E------LegLR 715 (1460)
+.++.+ .+..+|.-.+|..||.-. .|.+..+|+++++ |+.=+.|-.|-.-||.||-.+|+. ++-++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (977)
T PLN02939 285 EDVSKLSPLQYDCWWEKVENLQDLL-----DRATNQVEKAALV--LDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQ 357 (977)
T ss_pred hhhhhccchhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHH
Confidence 444433 334467788888777643 5677788888886 555556666777788888887764 45555
Q ss_pred HHHHHHHHHHHHHHH
Q 000499 716 DKVKALEEVCQNLLA 730 (1460)
Q Consensus 716 eK~K~LEesc~sL~~ 730 (1460)
.|+|-+|+..+--..
T Consensus 358 ~~~~~~~~~~~~~~~ 372 (977)
T PLN02939 358 QKLKLLEERLQASDH 372 (977)
T ss_pred HHHHHHHHHHHhhHH
Confidence 666666655544433
No 111
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.79 E-value=17 Score=46.42 Aligned_cols=167 Identities=19% Similarity=0.164 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000499 290 IAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELS-DRASKAEIEAQTLKLDLARIEAEKEAA 368 (1460)
Q Consensus 290 ~ae~E~~sLk~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~ln-eRa~~AE~E~~~LKqel~~l~~EKEa~ 368 (1460)
.+..|.+-|+.++..++ ..+.-|+-=.-+|.+|+..+ +.++ .+-..+++.+......+++-..++++.
T Consensus 118 ~~~~e~~~lk~~lee~~----~el~~~k~qq~~v~~l~e~l-------~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~ 186 (629)
T KOG0963|consen 118 KASEENEELKEELEEVN----NELADLKTQQVTVRNLKERL-------RKLEQLLEIFIENAANETEEKLEQEWAEREAG 186 (629)
T ss_pred hhhhhHHHHHHHHHHHH----HHHhhhhhhHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666664332 22222333333344443333 2222 233445555556666777777777777
Q ss_pred HHHHHHHH-HHHHHHHhhhhhhhHhHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 369 VVKYEECS-RMISALEDKLLHSEEDSKRINKVADKAES----EVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLA 443 (1460)
Q Consensus 369 ~lqyqQcL-E~IS~LE~ki~~aee~~~~ln~~~e~~e~----ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els 443 (1460)
+.--++.+ +++..++.+|+.++......-.++-.+++ ++-.....|.-+-.+.+..+-++-.+...+..|.+.+.
T Consensus 187 L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~ 266 (629)
T KOG0963|consen 187 LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLA 266 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555544 56667777766665433322222122222 23333333444444444444444444444544544444
Q ss_pred HHHHHHHHHH--HHHHhHHhhhhhHHH
Q 000499 444 RAEEEAQRLH--SELDNGFAKLKGAEE 468 (1460)
Q Consensus 444 ~sQEEv~RL~--~Ei~~~~~kL~~lE~ 468 (1460)
.+.... ++. .+|+.....|...+.
T Consensus 267 ~~N~~~-~~~~~~~i~~~~~~L~~kd~ 292 (629)
T KOG0963|consen 267 KANSSK-KLAKIDDIDALGSVLNQKDS 292 (629)
T ss_pred hhhhhh-hhccCCchHHHHHHHhHHHH
Confidence 433332 222 344444444444333
No 112
>PRK11281 hypothetical protein; Provisional
Probab=94.69 E-value=26 Score=48.10 Aligned_cols=35 Identities=14% Similarity=0.321 Sum_probs=21.2
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000499 329 NISRAEADAVELSDRASKAEIEAQTLKLDLARIEA 363 (1460)
Q Consensus 329 ~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~ 363 (1460)
++....+++..+..++..|-.++....+++..+..
T Consensus 74 qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 74 KIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 34445555666666666666666666666666554
No 113
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.63 E-value=25 Score=49.38 Aligned_cols=86 Identities=17% Similarity=0.248 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHH
Q 000499 265 ERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLET--EREANIRQYQQCLDKLSNMEKNISRAEADAVELSD 342 (1460)
Q Consensus 265 ek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~--Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lne 342 (1460)
.||.+|+..|......+..++++.......+..|.+....+=. ....++.....+...+..-...+..+.+.+.....
T Consensus 742 ~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~ 821 (1353)
T TIGR02680 742 RRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAA 821 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544444333333333333333333332222211 12333444444444444444444444444444444
Q ss_pred HHHHHHHH
Q 000499 343 RASKAEIE 350 (1460)
Q Consensus 343 Ra~~AE~E 350 (1460)
++..++..
T Consensus 822 ~~~~a~~~ 829 (1353)
T TIGR02680 822 AWKQARRE 829 (1353)
T ss_pred HHHHHHHH
Confidence 43333333
No 114
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.59 E-value=21 Score=46.54 Aligned_cols=111 Identities=22% Similarity=0.279 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHhhhh
Q 000499 626 CLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKL-LEKNAVLENSL 704 (1460)
Q Consensus 626 ~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekL-lEkns~LE~SL 704 (1460)
-.|.+++.+++....++- .+..||.....+++..-.+.-||..|-.+|..|+-- .+.+
T Consensus 469 t~kt~ie~~~~q~e~~is--------------ei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~------- 527 (1118)
T KOG1029|consen 469 TQKTEIEEVTKQRELMIS--------------EIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETT------- 527 (1118)
T ss_pred hHHHHHHHhhhHHHHHHH--------------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcc-------
Confidence 345555555555544444 344444444445555555667777777777776532 2221
Q ss_pred hhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhh
Q 000499 705 SDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENN 761 (1460)
Q Consensus 705 Sdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns 761 (1460)
.-...|......=|..|+.+++..-.|-.|...=++++++..-.|+.|-+-++
T Consensus 528 ----~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~ 580 (1118)
T KOG1029|consen 528 ----QRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVN 580 (1118)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 11222333334447789999999999999999999999988777777755443
No 115
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.56 E-value=13 Score=44.11 Aligned_cols=173 Identities=25% Similarity=0.332 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 240 LTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIA-EAEVQTLKEALARLETEREANIRQYQQ 318 (1460)
Q Consensus 240 ~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~a-e~E~~sLk~~la~Lq~Ekea~Llqykq 318 (1460)
+.|+..|..|+.+....+..-...-.|...|..++.......-.++..|... +-=..+|...|..|+.+++.-...|.+
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~ 102 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQ 102 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444444433344444455444444333322222222211 112567788888888889888888888
Q ss_pred HHHHHH-hHHHHHhHhHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----HHHHHHhhhhhhhH
Q 000499 319 CLDKLS-NMEKNISRAEADAVELSDRAS-KAEIEAQTLKLDLARIEAEKEAAVVKYEECSR-----MISALEDKLLHSEE 391 (1460)
Q Consensus 319 ClE~Is-~LE~~~s~aqeeak~lneRa~-~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE-----~IS~LE~ki~~aee 391 (1460)
=.|.+. .|..++.+.+.+=..+-.... +-+.-|..|+..|.++..++.+ |+.+|+ +|+ ||+.+-.-|
T Consensus 103 EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~----~q~~le~Lr~EKVd-lEn~LE~EQ- 176 (310)
T PF09755_consen 103 EEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSA----KQEELERLRREKVD-LENTLEQEQ- 176 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHh-HHHHHHHHH-
Confidence 777775 466666665554443322221 1233345566666666544422 334442 222 333322222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000499 392 DSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQ 430 (1460)
Q Consensus 392 ~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq 430 (1460)
+.=|..|.+.+.+|..++..++.++++
T Consensus 177 ------------E~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 177 ------------EALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 333456777788888888888888774
No 116
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.49 E-value=19 Score=45.48 Aligned_cols=398 Identities=22% Similarity=0.251 Sum_probs=198.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHH-----
Q 000499 347 AEIEAQTLKLDLARIEAEKEAAVVKYEECSR-MISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEE----- 420 (1460)
Q Consensus 347 AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE-~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~ee----- 420 (1460)
|+.+++-|++++.+|..|-+-+.--..|.-+ =++-|+.+ ..++.....+....+.++.+++.++..+++-...
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK-~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~ 84 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEK-EDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVA 84 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667777777777777655543221111110 11112222 1112222233334555566666666665533221
Q ss_pred -----HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHH
Q 000499 421 -----KEA-----LALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQK 490 (1460)
Q Consensus 421 -----kea-----l~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ek 490 (1460)
.+. ....-.-.+.+|..|+.++.+...++-+-+.|.+.......++=.....+|..--.|+.|+....-+
T Consensus 85 ~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfR 164 (772)
T KOG0999|consen 85 RDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFR 164 (772)
T ss_pred ccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH
Confidence 111 2222234577788888888888877777777766666665555555555555555555555444333
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHH
Q 000499 491 MGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEK 570 (1460)
Q Consensus 491 l~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~ 570 (1460)
-+-.- .---|++.=++++|+.+.. ..++|=|--+|..||..+.....-|+ +.+
T Consensus 165 E~Rll----seYSELEEENIsLQKqVs~--------------LR~sQVEyEglkheikRleEe~elln---~q~------ 217 (772)
T KOG0999|consen 165 EARLL----SEYSELEEENISLQKQVSN--------------LRQSQVEYEGLKHEIKRLEEETELLN---SQL------ 217 (772)
T ss_pred HHHHH----HHHHHHHHhcchHHHHHHH--------------HhhhhhhhhHHHHHHHHHHHHHHHHH---HHH------
Confidence 31111 1112222223333332111 11333333344444433333222221 111
Q ss_pred HHHHhccCcccccccHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhhhHHHHHHHHHhh--HHHHHHHHHHHHH
Q 000499 571 VKEENKGLNELNLSSAESIKNLQDEILSLRETIG--------KLEAEVELRVDQRNALQQEIYCL--KEELNELNKKHQA 640 (1460)
Q Consensus 571 l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~--------kLe~Ev~~~~~ek~aLq~el~~l--kee~~~Ln~k~~~ 640 (1460)
++...||++-+ -+++ ..++|++|..++.+- .++|..+|.-+.+
T Consensus 218 -----------------------ee~~~Lk~IAekQlEEALeTlq~----EReqk~alkkEL~q~~n~e~~~~~n~l~~s 270 (772)
T KOG0999|consen 218 -----------------------EEAIRLKEIAEKQLEEALETLQQ----EREQKNALKKELSQYRNAEDISSLNHLLFS 270 (772)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHhcchhhhhhhhhhhee
Confidence 22222332222 2222 345778888777443 3555555554444
Q ss_pred HHHHHhhcCCCccc-------------------hhhh-----HHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000499 641 MVEQVESVSLNPEN-------------------FGLS-----VKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEK 696 (1460)
Q Consensus 641 l~e~l~~l~~~~e~-------------------~~~~-----VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEk 696 (1460)
+......=|..|.. +... +.....+.++|+........||+-|+-.|++-++-++.
T Consensus 271 ldgk~~eDga~pn~d~e~eh~~l~kl~~Dl~tel~~p~sDl~sel~iseiqkLkqqL~smErek~~l~anL~dtqt~le~ 350 (772)
T KOG0999|consen 271 LDGKFGEDGAEPNNDPEEEHGALKKLASDLFTELQGPVSDLFSELNISEIQKLKQQLMSMEREKAELLANLQDTQTQLEH 350 (772)
T ss_pred cccccccccCCCCCChhhhcchhhhccchhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcc
Confidence 44322222222211 1222 23344557888888888888999999999888887776
Q ss_pred HHHHhhhhhhhhHhhhhHHHHHHHHHHHHHH--HHHhhhhhhhhHHHHH-hhhhHHHHHHHhhhhhhhhhhhhhhhhHHH
Q 000499 697 NAVLENSLSDLNVELEGVRDKVKALEEVCQN--LLAEKSTLVAEKNSLF-SQLQDVNENLKKLSDENNFLVNSLFDANAE 773 (1460)
Q Consensus 697 ns~LE~SLSdan~ELegLReK~K~LEesc~s--L~~eKS~L~sEK~~Lv-SQLq~~~~~l~~L~Ekns~LE~slSd~n~E 773 (1460)
- +.+|.....-++-|-+++.++=-.-.+ .++++--=--+++-+. -+|... -.+...|.-+..|
T Consensus 351 T---~~~l~~~~er~~~l~e~v~al~rlq~~~d~kgEk~rdg~~kad~~e~~l~a~-----------e~~a~k~~~a~~e 416 (772)
T KOG0999|consen 351 T---EGDLMEQRERVDRLTEHVQALRRLQDSKDKKGEKGRDGGEKADLYEVDLNAL-----------EILACKYAVAVDE 416 (772)
T ss_pred c---hhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhccccccccccchhHHhhhhhH-----------HHHHHHHHHHHHH
Confidence 5 777777777777777776665332222 2223222112222221 112221 1456777778888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHH
Q 000499 774 VEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEK 821 (1460)
Q Consensus 774 lE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek 821 (1460)
+-.++..++.|-.. .++..++....+.+-.+..++..+++
T Consensus 417 ~i~lk~ql~~l~~~--------~n~tde~~~~e~evq~l~~kl~llek 456 (772)
T KOG0999|consen 417 MIQLKDQLKALYHQ--------LNYTDEKVQYEKEVQELVEKLRLLEK 456 (772)
T ss_pred HHHHHHHHHHHHHh--------hcccchhhhHHHHHHHHHHHHHHHHH
Confidence 88888888877543 34445555555555555555555544
No 117
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.49 E-value=5.3 Score=47.27 Aligned_cols=166 Identities=26% Similarity=0.356 Sum_probs=110.9
Q ss_pred HHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHh-------hhhhhhhH-----------------hhhhH
Q 000499 660 KELQDENSKLKEVYERDRCEKVALLEKLEIME-KLLEKNAVLE-------NSLSDLNV-----------------ELEGV 714 (1460)
Q Consensus 660 keLQ~~n~~LkE~~s~~~~EK~~L~~kLq~me-kLlEkns~LE-------~SLSdan~-----------------ELegL 714 (1460)
+.|-..|..|.+..+.....=.+-.+++..+. .|.-|..+|- -|..+.+. -++.|
T Consensus 86 qsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~L 165 (306)
T PF04849_consen 86 QSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEAL 165 (306)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHH
Confidence 55555666666655555544444444444432 3444444432 23322222 37999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHH-----------HHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 000499 715 RDKVKALEEVCQNLLAEKSTLVAEKNS-----------LFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKS 783 (1460)
Q Consensus 715 ReK~K~LEesc~sL~~eKS~L~sEK~~-----------LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~ 783 (1460)
+.|+|.||+==..|+.+-+.|..|-+. -|.||-.....+..|.+..+.=-.-+...+.|+-+|..++-+
T Consensus 166 q~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqivd 245 (306)
T PF04849_consen 166 QEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVD 245 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988866332 357888888889999998888888889999999999999999
Q ss_pred HHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcc
Q 000499 784 LEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLG 832 (1460)
Q Consensus 784 lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~ 832 (1460)
++-.|+.+-.++-.|. .+|...++.=..|..+..++.+||..
T Consensus 246 lQ~r~k~~~~EnEeL~-------q~L~~ske~Q~~L~aEL~elqdkY~E 287 (306)
T PF04849_consen 246 LQQRCKQLAAENEELQ-------QHLQASKESQRQLQAELQELQDKYAE 287 (306)
T ss_pred HHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998866655554 44444444444444444444444443
No 118
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.40 E-value=15 Score=43.96 Aligned_cols=198 Identities=21% Similarity=0.280 Sum_probs=130.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHhhhccHHHHHHHHHHH
Q 000499 489 QKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAF---------------------QTLQHLHSQSQDELRSLAAEL 547 (1460)
Q Consensus 489 ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL---------------------~~Lq~LhSqSQeE~~~L~~Ei 547 (1460)
+-+....++|+.=+.|-+.++.+.+.-..++-...... ..|..+-+++.+..+.|..|+
T Consensus 9 eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev 88 (319)
T PF09789_consen 9 EALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEV 88 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666665554333333333322 334456678889999999999
Q ss_pred HHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 000499 548 QNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCL 627 (1460)
Q Consensus 548 ~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~l 627 (1460)
..+.++|.++.-...-|...+.+..-.-.+....++.. -=.+|=..+.++++.+.-|+.++.--+|||+.+-.+--..
T Consensus 89 ~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~--ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~y 166 (319)
T PF09789_consen 89 EELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPH--EREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAY 166 (319)
T ss_pred HHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888777777777766544444554444442 1234445567888888888888888888888887777666
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000499 628 KEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLE 695 (1460)
Q Consensus 628 kee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlE 695 (1460)
+.-..-||.....+. |-++-.+- -|-.|-.+|--|++.......|+..+...+----.+++
T Consensus 167 k~K~~RLN~ELn~~L------~g~~~riv-DIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 167 KCKAHRLNHELNYIL------NGDENRIV-DIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHh------CCCCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666766654443 22222222 57778888888888888888888888766665555555
No 119
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.39 E-value=14 Score=43.66 Aligned_cols=109 Identities=19% Similarity=0.137 Sum_probs=50.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhHHhhhhhHHHHHhHHHHhhHhh
Q 000499 412 QALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSE-----------LDNGFAKLKGAEEKCLLLERSNQTL 480 (1460)
Q Consensus 412 ~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~E-----------i~~~~~kL~~lE~~~~~LE~~~q~L 480 (1460)
.+|.....-..++.-..+++...=.++|..+-.+..+--+|+.- .+-+.++|..+|..+..|+...+..
T Consensus 91 tEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~t 170 (305)
T PF14915_consen 91 TEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHT 170 (305)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445555666667777777777777777654444432 2334444445555444444333333
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 481 HSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFV 520 (1460)
Q Consensus 481 ~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~ 520 (1460)
..-+..-.=-+-...+.|.+-+..+..+..+.+.+..++.
T Consensus 171 rdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~ 210 (305)
T PF14915_consen 171 RDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVN 210 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2222111111112233444444444444444444433333
No 120
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.26 E-value=11 Score=42.09 Aligned_cols=62 Identities=21% Similarity=0.306 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHH
Q 000499 234 KAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEV 295 (1460)
Q Consensus 234 kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~ 295 (1460)
.|+++|.+|...|..|+-|-|-+---|.-...++-+.+..-...---.+.+..|+.+.+..+
T Consensus 1 ~ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~ 62 (205)
T KOG1003|consen 1 KAEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKM 62 (205)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHH
Confidence 37889999999999999988888888888888888776655433322233334443333333
No 121
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.13 E-value=5.8 Score=42.30 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 418 TEEKEALALQYQQCLEAISILEHKLAR 444 (1460)
Q Consensus 418 ~eekeal~l~~qq~~~kI~~LE~els~ 444 (1460)
.+..+.+..+.....+-|.+|+.+++.
T Consensus 37 q~~~e~~~~daEn~k~eie~L~~el~~ 63 (140)
T PF10473_consen 37 QENKECLILDAENSKAEIETLEEELEE 63 (140)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 122
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.11 E-value=6.1 Score=44.02 Aligned_cols=110 Identities=25% Similarity=0.310 Sum_probs=69.0
Q ss_pred HHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000499 566 EEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVE-LRVDQRNALQQEIYCLKEELNELNKKHQAMVEQ 644 (1460)
Q Consensus 566 eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~-~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~ 644 (1460)
++|+-+++..+...+.+-.....+++...++.+++..+.+|+.=+. .+..|++.|+..+..+...+..-+++.+.|..+
T Consensus 68 eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~ 147 (194)
T PF15619_consen 68 EEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQ 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444555555677777777777777776665444 467899999999999999999999999999988
Q ss_pred HhhcCCCc----cchhhhHHHHHHHhhhhHHHHHH
Q 000499 645 VESVSLNP----ENFGLSVKELQDENSKLKEVYER 675 (1460)
Q Consensus 645 l~~l~~~~----e~~~~~VkeLQ~~n~~LkE~~s~ 675 (1460)
+...+-+. ..-..++.+++.++..|..+|..
T Consensus 148 leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~ 182 (194)
T PF15619_consen 148 LELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQR 182 (194)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76553211 11134444444444444444443
No 123
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.97 E-value=5.3 Score=44.60 Aligned_cols=121 Identities=21% Similarity=0.260 Sum_probs=72.4
Q ss_pred HHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 000499 661 ELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKN 740 (1460)
Q Consensus 661 eLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~ 740 (1460)
++..+|..|.+-......|..-|..+|..-++- ..+|..+..-+..+...++.|+--...|...-..+..||+
T Consensus 52 ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd-------K~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Erd 124 (201)
T PF13851_consen 52 EISQENKRLSEPLKKAEEEVEELRKQLKNYEKD-------KQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERD 124 (201)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433221 1233455555555555555555566666666666677777
Q ss_pred HHHhhhhHHHH-HHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 000499 741 SLFSQLQDVNE-NLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSC 788 (1460)
Q Consensus 741 ~LvSQLq~~~~-~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~ 788 (1460)
.|-...+.+-. --++..-||..||.++..+...+|..-.++.+.-..+
T Consensus 125 eL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~ 173 (201)
T PF13851_consen 125 ELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAA 173 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77766655433 3457788999999999999999998888776654433
No 124
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.47 E-value=6.7 Score=40.84 Aligned_cols=130 Identities=25% Similarity=0.327 Sum_probs=73.6
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHH
Q 000499 327 EKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESE 406 (1460)
Q Consensus 327 E~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~e 406 (1460)
..+++..+.++..+..++..+...+..++.++.....--..+--.|..=+.+++..-..|.. ++.+
T Consensus 2 ~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~--------------lr~e 67 (132)
T PF07926_consen 2 ESELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQ--------------LREE 67 (132)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--------------HHHH
Confidence 34556666677777777778888888888888777666666655577766666655444333 3444
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHH
Q 000499 407 VERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELES 486 (1460)
Q Consensus 407 v~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~ 486 (1460)
+..++..+..++...++....+...... -.++-..|..+|.....++.+ |...|.-||..++.
T Consensus 68 ~~~~~~~~~~l~~~~~~a~~~l~~~e~s----------w~~qk~~le~e~~~~~~r~~d-------L~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 68 LQELQQEINELKAEAESAKAELEESEAS----------WEEQKEQLEKELSELEQRIED-------LNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh
Confidence 4444555555555555544444333222 233334455554444444444 44456666666554
Q ss_pred H
Q 000499 487 M 487 (1460)
Q Consensus 487 L 487 (1460)
+
T Consensus 131 l 131 (132)
T PF07926_consen 131 L 131 (132)
T ss_pred c
Confidence 3
No 125
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.18 E-value=20 Score=42.69 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 588 SIKNLQDEILSLRETIGKLEAEVE 611 (1460)
Q Consensus 588 sIk~LQdEi~~LkE~~~kLe~Ev~ 611 (1460)
+|+.|..=|+.-|.+...++.++.
T Consensus 76 ~c~EL~~~I~egr~~~~~~E~~~~ 99 (325)
T PF08317_consen 76 SCRELKKYISEGRQIFEEIEEETY 99 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666666666666665555444
No 126
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.08 E-value=1.1 Score=49.28 Aligned_cols=95 Identities=24% Similarity=0.292 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhH
Q 000499 402 KAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLH 481 (1460)
Q Consensus 402 ~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~ 481 (1460)
.+..++..++..+.........+......+..+|..++..+...+.-+..++.|+..++--++-+|.+ +..|+
T Consensus 99 ~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k-------~~~l~ 171 (194)
T PF08614_consen 99 ELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEK-------LRKLE 171 (194)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 33444555555555555555666666666667777777777777777777777777777666666655 56667
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 000499 482 SELESMVQKMGSQSQELTEKQKELGRLW 509 (1460)
Q Consensus 482 sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq 509 (1460)
.|+..|++++ +..|..|.+.++
T Consensus 172 ~En~~Lv~Rw------m~~k~~eAe~mN 193 (194)
T PF08614_consen 172 EENRELVERW------MQRKAQEAERMN 193 (194)
T ss_dssp HHHHHHHHHH------HHHHHHHHHH--
T ss_pred HHHHHHHHHH------HHHHHHHHHHhc
Confidence 7777888877 666666766654
No 127
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=93.02 E-value=24 Score=41.83 Aligned_cols=218 Identities=22% Similarity=0.299 Sum_probs=135.9
Q ss_pred HHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHH
Q 000499 609 EVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLE 688 (1460)
Q Consensus 609 Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq 688 (1460)
..+.+.+-++.|..++..+.+..+.||.+..-|.+.+ +.+...-..+-+.+..++.++.-+.++++
T Consensus 21 ~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~--------------~elr~~rdeineev~elK~kR~ein~kl~ 86 (294)
T COG1340 21 EIEELKEKRDELRKEASELAEKRDELNAKVRELREKA--------------QELREERDEINEEVQELKEKRDEINAKLQ 86 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444677789999999999999999999998888744 44455555666666666777777777776
Q ss_pred H----HHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhh
Q 000499 689 I----MEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLV 764 (1460)
Q Consensus 689 ~----mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE 764 (1460)
. ..++.++.... +..-..++.++..+..||-..+- ..-+..-|+ .+|..+..+.+.+.+.. +-...-
T Consensus 87 eL~~~~~~l~e~~~~~----~~~~~~~~~ler~i~~Le~~~~T---~~L~~e~E~-~lvq~I~~L~k~le~~~-k~~e~~ 157 (294)
T COG1340 87 ELRKEYRELKEKRNEF----NLGGRSIKSLEREIERLEKKQQT---SVLTPEEER-ELVQKIKELRKELEDAK-KALEEN 157 (294)
T ss_pred HHHHHHHHHHHHhhhh----hccCCCHHHHHHHHHHHHHHHHh---cCCChHHHH-HHHHHHHHHHHHHHHHH-HHHHHH
Confidence 6 23344443211 01223344455455555544432 111222222 23444444433333321 111222
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHH
Q 000499 765 NSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKV 844 (1460)
Q Consensus 765 ~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~v 844 (1460)
.++-.+.++...++.+..++..-...+-++-..+-.++..+++-.+-+.....-+-.+|.+...+.-.+..++.....++
T Consensus 158 ~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~el 237 (294)
T COG1340 158 EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNEL 237 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34455567888888888888888888888888888888888888888888888888788777777777777765555555
Q ss_pred HHHHH
Q 000499 845 EELQF 849 (1460)
Q Consensus 845 eel~~ 849 (1460)
.+++.
T Consensus 238 re~~k 242 (294)
T COG1340 238 RELEK 242 (294)
T ss_pred HHHHH
Confidence 54443
No 128
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.94 E-value=35 Score=43.56 Aligned_cols=388 Identities=19% Similarity=0.269 Sum_probs=183.7
Q ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000499 377 RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSE- 455 (1460)
Q Consensus 377 E~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~E- 455 (1460)
..+..++..+..|++.+.+.+-. ++...+..+.+.+...++..+.+...++.+...=..--.++.+..+..+.++..
T Consensus 75 ~~~~~ie~~L~~ae~~~~~~rf~--ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~l 152 (560)
T PF06160_consen 75 KQLPEIEEQLFEAEEYADKYRFK--KAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKEL 152 (560)
T ss_pred HhhHHHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888777766542 344444444444444444444444444333322222222222222222222222
Q ss_pred ----------HHhHHhhhhhHHHHHhHHHHh-hHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 456 ----------LDNGFAKLKGAEEKCLLLERS-NQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAET 524 (1460)
Q Consensus 456 ----------i~~~~~kL~~lE~~~~~LE~~-~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~ 524 (1460)
++....+|.++|..+...+.- ..+=+.++..+...+......|++....|=.|-.-++.
T Consensus 153 l~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~---------- 222 (560)
T PF06160_consen 153 LAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQK---------- 222 (560)
T ss_pred HHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----------
Confidence 233344444555444433221 12234455555555544444455444444444443333
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH---------hhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHH
Q 000499 525 AFQTLQHLHSQSQDELRSLAAELQNRAQILKD---------MGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDE 595 (1460)
Q Consensus 525 aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~---------le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdE 595 (1460)
++-.--.++..+...+.. +...-..+.+.+......+..|+--.... .+..++++
T Consensus 223 --------------~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~--~~~~i~~~ 286 (560)
T PF06160_consen 223 --------------EFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEE--ENEEIEER 286 (560)
T ss_pred --------------HhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHH
Confidence 222222223333222222 11112222233333333333332222222 56667777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCc---cchhhhHHHHHHHhhhhHHH
Q 000499 596 ILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNP---ENFGLSVKELQDENSKLKEV 672 (1460)
Q Consensus 596 i~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~---e~~~~~VkeLQ~~n~~LkE~ 672 (1460)
|..|-+..++ .++=|....+....+..-+..+...+..+..++..++-+- +.--..++.++.....|...
T Consensus 287 Id~lYd~le~-------E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~ 359 (560)
T PF06160_consen 287 IDQLYDILEK-------EVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKR 359 (560)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 7777665544 3445556666666666666666666666666666653221 11223444444444433333
Q ss_pred HHHh---HHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhh--hhHHHHHhhh
Q 000499 673 YERD---RCEKVALLEKLEI-MEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLV--AEKNSLFSQL 746 (1460)
Q Consensus 673 ~s~~---~~EK~~L~~kLq~-mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~--sEK~~LvSQL 746 (1460)
.... -.++..-.+.++. ++.+.+...-+++...+.+..|.+||..=+.--+.-.-++...++.. =+|..|=.==
T Consensus 360 ~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp 439 (560)
T PF06160_consen 360 YEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLP 439 (560)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 2221 2233344455555 77788888888888888888888888876655555555544444432 1232221100
Q ss_pred hHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 000499 747 QDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLI 799 (1460)
Q Consensus 747 q~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~ 799 (1460)
+..-.-+.........|-..|+..-..++.+-..+.........+...-..+.
T Consensus 440 ~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li 492 (560)
T PF06160_consen 440 EDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELI 492 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222233344444455555555555666666666666665555544444433
No 129
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.88 E-value=9.4 Score=40.77 Aligned_cols=78 Identities=22% Similarity=0.202 Sum_probs=35.3
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 000499 387 LHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLK 464 (1460)
Q Consensus 387 ~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~ 464 (1460)
..++-....+...|.+++.+++........+.-+++.....+..+.+.|..|...+.+...++.-+.+|-+.+.+.+.
T Consensus 13 K~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq 90 (140)
T PF10473_consen 13 KESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQ 90 (140)
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444444444444444444444444433333
No 130
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.60 E-value=52 Score=44.66 Aligned_cols=234 Identities=18% Similarity=0.237 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 374 ECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLH 453 (1460)
Q Consensus 374 QcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~ 453 (1460)
.|=..|..+-.+|+....+..++....++.+.++...+++.. .+.-.+.+.-.+|+..+..+.. +-+.=+.+
T Consensus 224 hvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~-------ki~re~~~~Dk~i~~ke~~l~e-rp~li~~k 295 (1141)
T KOG0018|consen 224 HVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERG-------KIRRELQKVDKKISEKEEKLAE-RPELIKVK 295 (1141)
T ss_pred hhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhh-hhHHhhcc
Confidence 344566666666666666666666666666666666654433 3444555566666666666666 33333344
Q ss_pred HHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH
Q 000499 454 SELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVE--------AETA 525 (1460)
Q Consensus 454 ~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~E--------aE~a 525 (1460)
....+...+|...+......+........+.+.+...+ ..|+.....+.++.++..+ .+..
T Consensus 296 e~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l-----------~av~~~~~~fekei~~~~q~rg~~lnl~d~~ 364 (1141)
T KOG0018|consen 296 ENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKEL-----------KAVEGAKEEFEKEIEERSQERGSELNLKDDQ 364 (1141)
T ss_pred hhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhccccCCcchHH
Confidence 44455555555554443333333333333333333322 2222222222222111111 1222
Q ss_pred HHHHHHhhhcc----HHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHH
Q 000499 526 FQTLQHLHSQS----QDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRE 601 (1460)
Q Consensus 526 L~~Lq~LhSqS----QeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE 601 (1460)
+..-..|+.+. ++++..|..+...-..-|+...+++.++++-+..+...+..+.-.+.--..+|+.+......++.
T Consensus 365 ~~ey~rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~ 444 (1141)
T KOG0018|consen 365 VEEYERLKEEACKEALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKH 444 (1141)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222222222 45666666666666666666666666666666555444433322222222344555555555555
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHh
Q 000499 602 TIGKLEAEVELRVDQRNALQQEIYC 626 (1460)
Q Consensus 602 ~~~kLe~Ev~~~~~ek~aLq~el~~ 626 (1460)
...+++..++.-.++--.+..++..
T Consensus 445 d~~~l~~~~~~~~~~~~e~n~eL~~ 469 (1141)
T KOG0018|consen 445 DLDSLESLVSSAEEEPYELNEELVE 469 (1141)
T ss_pred cHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 5555555555444443334444433
No 131
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.56 E-value=11 Score=39.19 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000499 398 KVADKAESEVERLKQALGKLTEEKEALALQYQQ 430 (1460)
Q Consensus 398 ~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq 430 (1460)
.+-..++.++..++..+..|...+.-++.+++.
T Consensus 98 ~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 98 EQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344466778888888888888888888887763
No 132
>PRK09039 hypothetical protein; Validated
Probab=92.43 E-value=8.8 Score=46.05 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHh
Q 000499 432 LEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKM 491 (1460)
Q Consensus 432 ~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl 491 (1460)
.+.+......++.++-+|.+|+.+|+.+...|-.++......|......+...+.+..++
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555555555555555555555554444
No 133
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.38 E-value=33 Score=41.88 Aligned_cols=149 Identities=17% Similarity=0.196 Sum_probs=107.2
Q ss_pred HHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHH
Q 000499 322 KLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVAD 401 (1460)
Q Consensus 322 ~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e 401 (1460)
....+...+..|+.+...+..++.+...++.+|--.-.++++++++...+-++ |..-+..+...+..|..+..
T Consensus 124 ~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~-------LQ~s~~Qlk~~~~~L~~r~~ 196 (499)
T COG4372 124 ELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQ-------LQASATQLKSQVLDLKLRSA 196 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 34445667778888888899999999999999999999999999985332222 11113333344455555555
Q ss_pred HHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhh
Q 000499 402 KAESEVERLKQA---LGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSN 477 (1460)
Q Consensus 402 ~~e~ev~~Lk~~---l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~ 477 (1460)
+++.+.+.|-.. +....++........++.-++|+...-.+++..-++-.=...|.....+|+.+|..-..||.+.
T Consensus 197 ~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqev 275 (499)
T COG4372 197 QIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEV 275 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555443 6677788888888889999999999999888777777777788888888888887766665433
No 134
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.30 E-value=23 Score=42.15 Aligned_cols=128 Identities=27% Similarity=0.305 Sum_probs=55.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HH
Q 000499 358 LARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQC----LE 433 (1460)
Q Consensus 358 l~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~----~~ 433 (1460)
++++.+-+.=.--+++.=-..+..|+..+..++.+...+...+..+..-+..+......|..+...+......+ ..
T Consensus 130 ~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~ 209 (325)
T PF08317_consen 130 YARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQE 209 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHH
Confidence 45554444333333333334556666666666666555555444333333333333333333332222222211 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHH
Q 000499 434 AISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELE 485 (1460)
Q Consensus 434 kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e 485 (1460)
.+..+-.++.....++..++.++..+...+..+......+...++.+.++..
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555544444444444444444444444444444444333
No 135
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.20 E-value=58 Score=44.26 Aligned_cols=162 Identities=20% Similarity=0.301 Sum_probs=109.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 241 TLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAE-VQTLKEALARLETEREANIRQYQQC 319 (1460)
Q Consensus 241 ~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E-~~sLk~~la~Lq~Ekea~LlqykqC 319 (1460)
.+|...-.|+.|...+-.--..+..+.-.|..+.-.+++. +++++ -+.|+....+.+ .+..|.++--|
T Consensus 157 ElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~---------k~eaeky~~lkde~~~~q--~e~~L~qLfhv 225 (1141)
T KOG0018|consen 157 ELKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEG---------KEEAEKYQRLKDEKGKAQ--KEQFLWELFHV 225 (1141)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhh---------HHHHHHHHHHHHHHHHHH--HHHHHHHHhhh
Confidence 3555666666666666666666667777776666444321 22222 245666655444 45577788889
Q ss_pred HHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----------HHHHHHHHH----H--HH----HHHHH
Q 000499 320 LDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIE----------AEKEAAVVK----Y--EE----CSRMI 379 (1460)
Q Consensus 320 lE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~----------~EKEa~~lq----y--qQ----cLE~I 379 (1460)
.-+|..+-..+++-..+...+..+.++.+.++...|++.++.. .+++..+.. | ++ |--++
T Consensus 226 E~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl 305 (1141)
T KOG0018|consen 226 EACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRL 305 (1141)
T ss_pred hhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHH
Confidence 9999999999999999999999999999999999886665542 334433322 1 11 44677
Q ss_pred HHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 000499 380 SALEDKLLHSEEDSKRINKVADKAESEVERLKQA 413 (1460)
Q Consensus 380 S~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~ 413 (1460)
+..+..|-.++.+...+...+++.+.++..+...
T Consensus 306 ~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~ 339 (1141)
T KOG0018|consen 306 EEIEKDIETAKKDYRALKETIERLEKELKAVEGA 339 (1141)
T ss_pred HHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 7888888888888888877777777766655544
No 136
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=92.07 E-value=49 Score=43.15 Aligned_cols=182 Identities=23% Similarity=0.228 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHH
Q 000499 599 LRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRC 678 (1460)
Q Consensus 599 LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~ 678 (1460)
|-.-...=..|+.+..-.+.+||.++.+-.+....+..+..+..+++..+.--+.++.. -|+..-.+
T Consensus 357 Lq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~---~L~s~ma~---------- 423 (739)
T PF07111_consen 357 LQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQ---WLESQMAK---------- 423 (739)
T ss_pred HHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----------
Confidence 33333334566676767788899999999999999999888888877655222222211 22222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHH---HH----HHHHH-------HHHHhhhhhhhhHHHHHh
Q 000499 679 EKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVK---AL----EEVCQ-------NLLAEKSTLVAEKNSLFS 744 (1460)
Q Consensus 679 EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K---~L----Eesc~-------sL~~eKS~L~sEK~~LvS 744 (1460)
|+--+-..--|++-||=|---+.-+|+-+. +| .++|- .|..|---|-.||+.|.+
T Consensus 424 -----------ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaqlrqe~~~~~pp~~~dL~~ELqqLReERdRl~a 492 (739)
T PF07111_consen 424 -----------VEQALARLPSLSNRLSYAVRRVHTIQGLMARKLALAQLRQEQCPPSPPSVTDLSLELQQLREERDRLDA 492 (739)
T ss_pred -----------HHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 222222333344444444444333333211 10 12222 344555556667777777
Q ss_pred hhhHHHH---------------HHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHH
Q 000499 745 QLQDVNE---------------NLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVN 804 (1460)
Q Consensus 745 QLq~~~~---------------~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~ 804 (1460)
+|+.... ...+|.++...||.++.+....+.++..++...+.+.+.-..+-..+..+...
T Consensus 493 eLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~ 567 (739)
T PF07111_consen 493 ELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQ 567 (739)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 7764332 24478888888888888888888888877777777766665555555444433
No 137
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=92.01 E-value=17 Score=44.60 Aligned_cols=85 Identities=24% Similarity=0.352 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHH
Q 000499 233 GKAEMEILTLKNALAKLEAEKEAGLLQYRQSL-----------ERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEA 301 (1460)
Q Consensus 233 ~kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~sl-----------ek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~ 301 (1460)
.....|+..+++....|+..-|..+.+|..-+ -||..||.++++.= .-=..|+-.||++
T Consensus 215 ~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~----------elHq~Ei~~LKqe 284 (395)
T PF10267_consen 215 QKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLT----------ELHQNEIYNLKQE 284 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 35556666667777766666666666655433 36666777766532 2235688999999
Q ss_pred HHHHHHHHH-----HHHH---HHHHHHHHHHhHH
Q 000499 302 LARLETERE-----ANIR---QYQQCLDKLSNME 327 (1460)
Q Consensus 302 la~Lq~Eke-----a~Ll---qykqClE~Is~LE 327 (1460)
|+-.++..+ .+.- ..-+|..+|++||
T Consensus 285 La~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 285 LASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 986665421 1100 3445666777776
No 138
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=91.93 E-value=30 Score=40.40 Aligned_cols=146 Identities=18% Similarity=0.167 Sum_probs=88.4
Q ss_pred HhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHhhhc--
Q 000499 460 FAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEE-RLRFVEAETAFQTL-QHLHSQ-- 535 (1460)
Q Consensus 460 ~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E-~~k~~EaE~aL~~L-q~LhSq-- 535 (1460)
..-|.++..++..|-..|..|..+.+..........+.+-++..-....=.+++-= +.+.-.|.+.|+.+ ++..+.
T Consensus 5 r~sl~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~ 84 (258)
T PF15397_consen 5 RTSLQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLS 84 (258)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHH
Confidence 44566777788889889999999999888888888888888877666665555543 44566667777766 444332
Q ss_pred -cHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 536 -SQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVE 611 (1460)
Q Consensus 536 -SQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~ 611 (1460)
.|.++..|...|.+....|+.+-+.+ |-+.-|..++=. .|.-+ +.. .=...|||+..|.+++...-..+.
T Consensus 85 ~Lq~ql~~l~akI~k~~~el~~L~TYk-D~EYPvK~vqIa--~L~rq-lq~--lk~~qqdEldel~e~~~~el~~l~ 155 (258)
T PF15397_consen 85 KLQQQLEQLDAKIQKTQEELNFLSTYK-DHEYPVKAVQIA--NLVRQ-LQQ--LKDSQQDELDELNEMRQMELASLS 155 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHH--HHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 26666667777777777776665433 344333333111 11000 000 112456777777777766444444
No 139
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.78 E-value=6.8 Score=44.98 Aligned_cols=113 Identities=30% Similarity=0.417 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000499 290 IAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAV 369 (1460)
Q Consensus 290 ~ae~E~~sLk~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~ 369 (1460)
.|+.+-+-|+..|.+++.+...+--.+....+++-.|+.+...+++++..|-..+..|+.....|+........++..
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~-- 79 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQ-- 79 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 356667778888888888888888888999999999999999999999999999999999999999988888777764
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 000499 370 VKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGK 416 (1460)
Q Consensus 370 lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~ 416 (1460)
|+.++..++..+.++......-+.++..|+..+..
T Consensus 80 ------------Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ 114 (246)
T PF00769_consen 80 ------------LEQELREAEAEIARLEEESERKEEEAEELQEELEE 114 (246)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555433
No 140
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.66 E-value=36 Score=40.71 Aligned_cols=217 Identities=22% Similarity=0.276 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHH
Q 000499 259 QYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAV 338 (1460)
Q Consensus 259 qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak 338 (1460)
.|.+-.-||..|..+-..+..++.....++.....+++.|+++-.++++..+.- .|-||
T Consensus 21 t~~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqE-------EE~is-------------- 79 (310)
T PF09755_consen 21 TREQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQE-------EEFIS-------------- 79 (310)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH--------------
Confidence 346666677777766555555555555555555566666666655443332221 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhhHhHHHHHHHHH-HHHHHHHHHHHHH
Q 000499 339 ELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEE---CSRMISALEDKLLHSEEDSKRINKVAD-KAESEVERLKQAL 414 (1460)
Q Consensus 339 ~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQ---cLE~IS~LE~ki~~aee~~~~ln~~~e-~~e~ev~~Lk~~l 414 (1460)
.+|.+-+..++.||+.....|.+ ||- -.|..+|..+...--.+-..++ .-+.-|..|...|
T Consensus 80 -------------N~LlKkl~~l~keKe~L~~~~e~EEE~lt--n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i 144 (310)
T PF09755_consen 80 -------------NTLLKKLQQLKKEKETLALKYEQEEEFLT--NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKI 144 (310)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 24666677777888888778875 541 1222232222222111111111 1244567778888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHH---
Q 000499 415 GKLTEEKEALALQYQQCLEAISILEHKLARAEE-EAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQK--- 490 (1460)
Q Consensus 415 ~~L~eekeal~l~~qq~~~kI~~LE~els~sQE-Ev~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ek--- 490 (1460)
..|..+..+.+..+.++...-..||+.+-+-|+ -|+|||--++.+...=+.+... |+...+...+-.+.....
T Consensus 145 ~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~---l~~~~s~~~s~~d~~~~~~~~ 221 (310)
T PF09755_consen 145 ERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEK---LEQPVSAPPSPRDTVNVSEEN 221 (310)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccccCCCCCcchHHhhcccC
Confidence 888877777888888887777779998887665 4788887777666555444443 322222222222221100
Q ss_pred --hhhhhHHHHHHHHHHHHHHHHHHH
Q 000499 491 --MGSQSQELTEKQKELGRLWTCIQE 514 (1460)
Q Consensus 491 --l~~~~qeL~eK~~Ei~~Lq~slq~ 514 (1460)
..-..--+.....||.+|..-+..
T Consensus 222 Dt~e~~~shI~~Lr~EV~RLR~qL~~ 247 (310)
T PF09755_consen 222 DTAERLSSHIRSLRQEVSRLRQQLAA 247 (310)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 011223355666677777777765
No 141
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=91.51 E-value=46 Score=41.63 Aligned_cols=35 Identities=20% Similarity=0.103 Sum_probs=25.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 000499 760 NNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNE 794 (1460)
Q Consensus 760 ns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e 794 (1460)
|-.--+|++++.--+.+.+.++..+-.+|.-.+.+
T Consensus 546 nL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~~r~~ 580 (622)
T COG5185 546 NLLSKTSILDAEQLVQSTEIKLDELKVDLNRKRYK 580 (622)
T ss_pred hhhccchHhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33345677888888888888888888888766554
No 142
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=91.08 E-value=53 Score=41.56 Aligned_cols=62 Identities=19% Similarity=0.321 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhc
Q 000499 498 LTEKQKELGRLWT-CIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTR 560 (1460)
Q Consensus 498 L~eK~~Ei~~Lq~-slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~ 560 (1460)
|..|.+-|..|+. |..+......-. +.+..+.......+++++.|...|+.+...+.+++..
T Consensus 248 Lq~kEklI~~LK~~~~~~~~~~~~~~-~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~ 310 (511)
T PF09787_consen 248 LQSKEKLIESLKEGCLEEGFDSSTNS-IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQ 310 (511)
T ss_pred hcCHHHHHHHHHhcccccccccccch-hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666766 554321110000 2234444445555678888887777777777777664
No 143
>PF13514 AAA_27: AAA domain
Probab=90.91 E-value=82 Score=43.46 Aligned_cols=331 Identities=23% Similarity=0.299 Sum_probs=142.8
Q ss_pred HHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhhhchh---hHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000499 242 LKNALAKLEAEKEAGL------LQYRQSLERLSNLESEVSHAREDSKGLS---EQASIAEAEVQTLKEALARLETEREAN 312 (1460)
Q Consensus 242 Lkk~i~~LqtEKE~~~------~qY~~slek~~~LE~~is~aQ~~~~~L~---era~~ae~E~~sLk~~la~Lq~Ekea~ 312 (1460)
|-..+..|..+.+..+ ..+++.+.+|.+++.+|..++....... .....++.+...|...+..++.+...-
T Consensus 128 l~~~~~~L~~ea~~Lfkprg~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l 207 (1111)
T PF13514_consen 128 LSQVLKQLDKEADELFKPRGRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRL 207 (1111)
T ss_pred HHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666655543 3577777777777777777766655443 233344555555555555554442211
Q ss_pred --HHHHHHHHHHHHhHHHHHh----------HhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHH
Q 000499 313 --IRQYQQCLDKLSNMEKNIS----------RAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYE--ECSRM 378 (1460)
Q Consensus 313 --LlqykqClE~Is~LE~~~s----------~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyq--QcLE~ 378 (1460)
+.+.---+..+..|+..+. ........+..+...+...+..+..++..+..+.++..+-.. ..-..
T Consensus 208 er~~~~~p~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~ 287 (1111)
T PF13514_consen 208 ERLRRAWPLLAELQQLEAELAELGEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAE 287 (1111)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHH
Confidence 1111111222222333322 112222233344444555555555555555444433211100 11123
Q ss_pred HHHHHhh---hhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhH-H-HHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 379 ISALEDK---LLHSEEDSKRINKVADKAESEVERLKQALGKL-T-EEKEA------LALQYQQCLEAISILEHKLARAEE 447 (1460)
Q Consensus 379 IS~LE~k---i~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L-~-eekea------l~l~~qq~~~kI~~LE~els~sQE 447 (1460)
|..|... +..+..+..++..++......+..+...++-= . ....+ ...++..+......++..+..++.
T Consensus 288 I~~L~~~~~~~~~~~~dl~~~~~e~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~ 367 (1111)
T PF13514_consen 288 IEALEEQRGEYRKARQDLPRLEAELAELEAELRALLAQLGPDWDEEDLEALDPSLAARERIRELLQEREQLEQALAQARR 367 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332 33334444444444444444444444444300 0 00111 222333333333333333333333
Q ss_pred HHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 448 EAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQ 527 (1460)
Q Consensus 448 Ev~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~ 527 (1460)
+..+...++......+..++..- ....+...+.... ........+.....++...+.-+..-....----..+.
T Consensus 368 ~l~~~~~~~~~~~~~~~~l~~~~-----~~~~l~~al~~~~-~~~d~~~~~~~~~~~~~~~~~~l~~~l~~L~~w~~~~~ 441 (1111)
T PF13514_consen 368 ELEEAERELEQLQAELAALPAPP-----DPEALRAALEAAQ-RLGDLEARLQEAEQALEAAERRLAAALAALGPWSGDLD 441 (1111)
T ss_pred HHHHHHHHHHHHHHHHhhCcccC-----CChHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChH
Confidence 33333333333333332222110 0011222222211 11122233333444444444443332221111112334
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccC
Q 000499 528 TLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGL 578 (1460)
Q Consensus 528 ~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L 578 (1460)
.+..+.-++.+.+.....+...+...+......-..+..++..+..+...|
T Consensus 442 ~l~~~~~P~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 492 (1111)
T PF13514_consen 442 ALAALPLPSRETVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRL 492 (1111)
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666777888888877777777777777777777776666665555555
No 144
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=90.85 E-value=33 Score=38.86 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000499 297 TLKEALARLETEREANIR 314 (1460)
Q Consensus 297 sLk~~la~Lq~Ekea~Ll 314 (1460)
.....+.++..+++.+..
T Consensus 66 ~~~~~i~~~~~erdq~~~ 83 (207)
T PF05010_consen 66 LSEAEIQKLLKERDQAYA 83 (207)
T ss_pred hHHHHHHHHHhhHHHHHH
Confidence 334445555555555543
No 145
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.44 E-value=34 Score=40.11 Aligned_cols=169 Identities=22% Similarity=0.318 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 000499 547 LQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYC 626 (1460)
Q Consensus 547 i~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~ 626 (1460)
|.+--..++++.....+++.+|..+...+..+..+ +.+++.+|..++.... .|+.+|..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k-------~~~~~~~i~~~~~eik--------------~l~~eI~~ 91 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSK-------IDELQKEIDQSKAEIK--------------KLQKEIAE 91 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH--------------HHHHHHHH
Confidence 66666667777777777777777775443333222 4455555555554333 35556655
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcC---------CCccchhhhHHHHHHHhhhhHHHHHH-------hHHHHHHHHHHHHHH
Q 000499 627 LKEELNELNKKHQAMVEQVESVS---------LNPENFGLSVKELQDENSKLKEVYER-------DRCEKVALLEKLEIM 690 (1460)
Q Consensus 627 lkee~~~Ln~k~~~l~e~l~~l~---------~~~e~~~~~VkeLQ~~n~~LkE~~s~-------~~~EK~~L~~kLq~m 690 (1460)
+++.|...+..+..=...|..-| ++.++|. ||-.+..-+..+++. +..+|..|-.+=.
T Consensus 92 ~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~SkSfs----D~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~-- 165 (265)
T COG3883 92 LKENIVERQELLKKRARAMQVNGTATSYIDVILNSKSFS----DLISRVTAISVIVDADKKILEQQKEDKKSLEEKQA-- 165 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccCcHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--
Confidence 55555554444332222232222 2333343 333332222222221 1222222211111
Q ss_pred HHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 000499 691 EKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLF 743 (1460)
Q Consensus 691 ekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~Lv 743 (1460)
.+=+++.-|..-.-++..-+..|......+....-.++.+.+.+..|++.|.
T Consensus 166 -~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 166 -ALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 1122223333333344445556666677777777777777777777877777
No 146
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=90.32 E-value=70 Score=41.70 Aligned_cols=340 Identities=17% Similarity=0.165 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHH--HHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHH
Q 000499 339 ELSDRASKAEIEAQTL-------KLDLARIEAEKEAAVVK--YEECSRMISALEDKLLHSEEDSKRINKVADKAESEVER 409 (1460)
Q Consensus 339 ~lneRa~~AE~E~~~L-------Kqel~~l~~EKEa~~lq--yqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~ 409 (1460)
.+.+|+..++.+|.++ +.+...+..|--+.+.. +..|-+.|..|-.+=-.+-..---....|.+++.+.++
T Consensus 406 e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke 485 (961)
T KOG4673|consen 406 EYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKE 485 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Confidence 5557888888777763 44444444444444444 44677777666443111100000111224444444444
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHhhhhhHHHHHhHHHHhhHhhHH
Q 000499 410 LKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDN-------GFAKLKGAEEKCLLLERSNQTLHS 482 (1460)
Q Consensus 410 Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~-------~~~kL~~lE~~~~~LE~~~q~L~s 482 (1460)
-..=+.++.+.+--+....+.+..-+...|..-...++-|.+++.++.. ......++|.++..++..+-.+..
T Consensus 486 ~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~ 565 (961)
T KOG4673|consen 486 AETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARS 565 (961)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4333334444444444444444444444444444455555555555422 223333444454455555555555
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchH
Q 000499 483 ELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQ 562 (1460)
Q Consensus 483 E~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~ 562 (1460)
++++-+.. +..++.+.+. -|-+.+.|-++...-+|.+... - -.-+..||..+...|..-+++.+
T Consensus 566 Dlqk~nrl---kQdear~~~~---~lvqqv~dLR~~L~~~Eq~aar---------r-Ed~~R~Ei~~LqrRlqaaE~R~e 629 (961)
T KOG4673|consen 566 DLQKENRL---KQDEARERES---MLVQQVEDLRQTLSKKEQQAAR---------R-EDMFRGEIEDLQRRLQAAERRCE 629 (961)
T ss_pred hHHHHhhh---hhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---------H-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 43332221 1112222111 1112222222222222222222 1 12367778888888888888888
Q ss_pred hHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000499 563 SLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMV 642 (1460)
Q Consensus 563 ~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~ 642 (1460)
.|-.+|-.. -.|+ ..-|..||.=+++---.-+++|.-+.-+.++...|..-.- + +-++-.
T Consensus 630 el~q~v~~T------TrPL----lRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v-~---------~eqgek 689 (961)
T KOG4673|consen 630 ELIQQVPET------TRPL----LRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINV-L---------EEQGEK 689 (961)
T ss_pred HHHhhcccc------ccHH----HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHH-H---------HHhhhH
Confidence 776665443 2222 2246666666666555555655555545555544433221 0 013333
Q ss_pred HHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHH
Q 000499 643 EQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALE 722 (1460)
Q Consensus 643 e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LE 722 (1460)
.++-++++.+-+... |. +-+++|...|.-.|. +=--+-.-++.-++.+..|++.|.+....|+
T Consensus 690 qElL~~~~~l~s~~~-----q~---------sllraE~~~l~~~le---~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le 752 (961)
T KOG4673|consen 690 QELLSLNFSLPSSPI-----QL---------SLLRAEQGQLSKSLE---KERNRAAENRQEYLAAQEEADTLEGRANQLE 752 (961)
T ss_pred HHHHHHhcCCCcchh-----HH---------HHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443322211 11 122334333322221 1111223345566777888888888888888
Q ss_pred HHHHHHHHh
Q 000499 723 EVCQNLLAE 731 (1460)
Q Consensus 723 esc~sL~~e 731 (1460)
.-|+-++.+
T Consensus 753 ~e~r~~k~~ 761 (961)
T KOG4673|consen 753 VEIRELKRK 761 (961)
T ss_pred HHHHHHHHH
Confidence 888776543
No 147
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=90.24 E-value=46 Score=39.55 Aligned_cols=49 Identities=29% Similarity=0.333 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000499 596 ILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQ 644 (1460)
Q Consensus 596 i~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~ 644 (1460)
...++.....+..++.--....+.+..++-.++.++.++++.+.++...
T Consensus 202 ~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~ 250 (294)
T COG1340 202 ADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAK 250 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333443334445566667777777777777766666553
No 148
>PRK09039 hypothetical protein; Validated
Probab=89.24 E-value=49 Score=39.96 Aligned_cols=158 Identities=17% Similarity=0.204 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHh
Q 000499 400 ADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQT 479 (1460)
Q Consensus 400 ~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~ 479 (1460)
+...+.++..|..+|..|-+....-......+...|..+...+..++..-.+|..-..........++
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~------------ 115 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAE------------ 115 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHH------------
Confidence 33344455555555555555544445555566666666666666665555555554333222222222
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHH-HHHhh
Q 000499 480 LHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQI-LKDMG 558 (1460)
Q Consensus 480 L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~-L~~le 558 (1460)
..+..+...+........+.+-.|..|+.-|..-..+.-..+++|...+.-....+..+..|..+|+..... ..++.
T Consensus 116 --~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~ 193 (343)
T PRK09039 116 --GRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELN 193 (343)
T ss_pred --HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233334434444455556666666666666555566777788888777788889999999999988754 88888
Q ss_pred hchHhHHHHHHHH
Q 000499 559 TRNQSLQEEVEKV 571 (1460)
Q Consensus 559 ~~k~~L~eev~~l 571 (1460)
.-+..+-..+..+
T Consensus 194 ~~~~~~~~~l~~~ 206 (343)
T PRK09039 194 RYRSEFFGRLREI 206 (343)
T ss_pred HhHHHHHHHHHHH
Confidence 8888886666543
No 149
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=89.12 E-value=57 Score=39.02 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHH
Q 000499 588 SIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNK 636 (1460)
Q Consensus 588 sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~ 636 (1460)
+|++|..=|+.=|.+...+|.++-.. .=.|=++.+..-.++..+..
T Consensus 71 sC~EL~~~I~egr~~~~~~E~et~~~---nPpLF~EY~~a~~d~r~lm~ 116 (312)
T smart00787 71 SCKELKKYISEGRDLFKEIEEETLIN---NPPLFKEYFSASPDVKLLMD 116 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc---CcHHHHHHHcCCHHHHHHHH
Confidence 78999999999999888888877622 22355566555555444433
No 150
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=88.89 E-value=53 Score=38.29 Aligned_cols=49 Identities=18% Similarity=0.155 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHH
Q 000499 345 SKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRI 396 (1460)
Q Consensus 345 ~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~l 396 (1460)
.+++...+.|+-++.+..+ -.-.||-|....+|.|+..+++...--..+
T Consensus 62 rdl~t~nqrl~~E~e~~Ke---k~e~q~~q~y~q~s~Leddlsqt~aikeql 110 (333)
T KOG1853|consen 62 RDLETRNQRLTTEQERNKE---KQEDQRVQFYQQESQLEDDLSQTHAIKEQL 110 (333)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544432 333456677778899999887776543333
No 151
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.46 E-value=95 Score=40.71 Aligned_cols=97 Identities=26% Similarity=0.354 Sum_probs=70.3
Q ss_pred hhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhH-------HHHHHHH-----
Q 000499 862 VQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLL-------FECQKLL----- 929 (1460)
Q Consensus 862 ~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~~~AqieifiLq~~l~Dl~~kn~~ll-------~EcQk~~----- 929 (1460)
..+|+..++.|..+|..|.++..-|-.. ++||..+=+.|. .|-++|.
T Consensus 221 ~~is~etl~~L~~~v~~l~~~k~qr~~k---------------------l~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~ 279 (660)
T KOG4302|consen 221 RSISDETLDRLDKMVKKLKEEKKQRLQK---------------------LQDLRTKLLELWNLLDTSDEERQRFVHVTES 279 (660)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhccCCHHHHHHHccccHH
Confidence 5577888888888888887776655443 444444433333 2344443
Q ss_pred ---HhhhhHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000499 930 ---QESSLSEKLIHKLENENCE-QQEEMRSLVDQIKVLRVQLYQLLEILEIDAD 979 (1460)
Q Consensus 930 ---eas~~se~lIseLe~E~~~-~q~e~~~L~~~~~~Lr~gi~qv~k~L~i~~~ 979 (1460)
..+.++..+|.+.+.|+.- .+....-+-.-|.+.|..|.+.+..+++..+
T Consensus 280 e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~mKeli~k~r~Eleel~~~~h~s~~ 333 (660)
T KOG4302|consen 280 EATEPNSLSLDIIEQVEKEVDRLEQLKASNMKELIEKKRSELEELWRLLHYSEE 333 (660)
T ss_pred HhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6788899999999999987 5566666777889999999999999988775
No 152
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.81 E-value=23 Score=38.37 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000499 336 DAVELSDRASKAEIEAQTLKLDLARIE 362 (1460)
Q Consensus 336 eak~lneRa~~AE~E~~~LKqel~~l~ 362 (1460)
+....+.+......++..+...+..+.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~ 108 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELE 108 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444333333
No 153
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=87.60 E-value=65 Score=37.80 Aligned_cols=109 Identities=20% Similarity=0.216 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh-hhhHHHHHhHHHHhhHhhHH
Q 000499 404 ESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAK-LKGAEEKCLLLERSNQTLHS 482 (1460)
Q Consensus 404 e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~k-L~~lE~~~~~LE~~~q~L~s 482 (1460)
+..+++++++...|.+.+..+...++.+.+.-..-=..+.+.+.-..+.-.=|...+.+ +.++..+ |+.-.....+
T Consensus 5 r~sl~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~e---Lqe~eek~e~ 81 (258)
T PF15397_consen 5 RTSLQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAE---LQEWEEKEES 81 (258)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHH---HHHHHHHHHh
Confidence 45566777777777777777777777666665555555555555555555444444333 2222222 2222222233
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000499 483 ELESMVQKMGSQSQELTEKQKELGRLWTCIQEE 515 (1460)
Q Consensus 483 E~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E 515 (1460)
.+..|.+.+...+..+...+.||.-|.+-+..|
T Consensus 82 ~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~E 114 (258)
T PF15397_consen 82 KLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHE 114 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333333333333444445555555555555544
No 154
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.14 E-value=11 Score=46.36 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=88.8
Q ss_pred HHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHH
Q 000499 741 SLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLE 820 (1460)
Q Consensus 741 ~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~le 820 (1460)
.|.|||++-..=.+ ...+.++. +++++.+..++.+=.-+..+.++.+.+.+++..+++-+-.++.+++...
T Consensus 325 ll~sqleSqr~y~e---~~~~e~~q------sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~ 395 (493)
T KOG0804|consen 325 LLTSQLESQRKYYE---QIMSEYEQ------SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQ 395 (493)
T ss_pred hhhhhhhHHHHHHH---HHHHHHHH------HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677776422222 33333333 5889999999999888999999999999999999999999999999888
Q ss_pred HHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhh
Q 000499 821 KSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQIS 877 (1460)
Q Consensus 821 k~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is 877 (1460)
++-.++.+---.+....+.-..++++++.++. .+....+..|.+|+.|+.
T Consensus 396 kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~-------~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 396 KELKEEREENKKLIKNQDVWRGKLKELEEREK-------EALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 88777775555566666666677777665554 445666788888888864
No 155
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=86.93 E-value=56 Score=36.40 Aligned_cols=118 Identities=30% Similarity=0.308 Sum_probs=84.6
Q ss_pred hhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhh
Q 000499 797 CLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQI 876 (1460)
Q Consensus 797 ~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~i 876 (1460)
.+......+.+||.+...++..||+++........++..|+..++.+ +++|--++...
T Consensus 54 e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~----q~~l~~e~~~~------------------ 111 (178)
T PF14073_consen 54 ELSKQNQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQ----QVSLQRERQQD------------------ 111 (178)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHhccc------------------
Confidence 33455789999999999999999999999999999999998776543 44444443211
Q ss_pred hhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHH
Q 000499 877 SFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSL 956 (1460)
Q Consensus 877 s~LqEe~~~r~~~~eeE~dk~~~AqieifiLq~~l~Dl~~kn~~ll~EcQk~~eas~~se~lIseLe~E~~~~q~e~~~L 956 (1460)
+.+ ++-.++.| --|-.||-++--.-.++++=|..||......+-..+-+
T Consensus 112 ------------------------~~~---~~~klekL----e~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlv 160 (178)
T PF14073_consen 112 ------------------------QSE---LQAKLEKL----EKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLV 160 (178)
T ss_pred ------------------------hhh---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11111111 12445888888888889999999999888888888888
Q ss_pred HHHHHHHHHHH
Q 000499 957 VDQIKVLRVQL 967 (1460)
Q Consensus 957 ~~~~~~Lr~gi 967 (1460)
.+.-.-|..|.
T Consensus 161 QdkAaqLQt~l 171 (178)
T PF14073_consen 161 QDKAAQLQTGL 171 (178)
T ss_pred HHHHHHHHhhH
Confidence 88777777774
No 156
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.51 E-value=23 Score=40.85 Aligned_cols=107 Identities=32% Similarity=0.429 Sum_probs=61.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000499 353 TLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCL 432 (1460)
Q Consensus 353 ~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~ 432 (1460)
.|..-+....++...+.-.....-++|..|+.+...+++....|-.....++...+.|...-....+++..|...+....
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~ 88 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAE 88 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333332223344567788888888888887777776666777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000499 433 EAISILEHKLARAEEEAQRLHSELDNG 459 (1460)
Q Consensus 433 ~kI~~LE~els~sQEEv~RL~~Ei~~~ 459 (1460)
..|..|.........++.+|..++..-
T Consensus 89 ~~i~~l~ee~~~ke~Ea~~lq~el~~a 115 (246)
T PF00769_consen 89 AEIARLEEESERKEEEAEELQEELEEA 115 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777664433
No 157
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.25 E-value=15 Score=38.22 Aligned_cols=100 Identities=34% Similarity=0.346 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHhHHH
Q 000499 1028 VALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSELQGA 1107 (1460)
Q Consensus 1028 ~t~L~ql~~e~~~L~~Ek~~L~~E~~~~s~q~l~Lq~e~~eLle~n~qL~~~~~~~~~ree~lk~E~~~l~~~l~~l~~s 1107 (1460)
+.++..++...+.++.|...+..++.....+--.+..+...|...|++++ ....++..|..++.+|+.-
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~-----------~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELR-----------ALKKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999888888888888888888887774 3455677788888888889
Q ss_pred HHHhHhhhhhhhhhhhhHHHHhhhhHHhhhh
Q 000499 1108 QQSLQDQNCKVLDEKKSLMKKVLDLQEEKHS 1138 (1460)
Q Consensus 1108 ~~~lq~e~~~~~~e~~sL~k~~~~l~e~~~~ 1138 (1460)
|+++=+=+.--.++.+-|.--+.|+++-|..
T Consensus 84 y~t~LellGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 84 YQTLLELLGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 9988777777777888888888888877654
No 158
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=86.22 E-value=1.2e+02 Score=39.47 Aligned_cols=42 Identities=33% Similarity=0.406 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHH
Q 000499 267 LSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETE 308 (1460)
Q Consensus 267 ~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~E 308 (1460)
...-+.++..+|..+..+..+....+.++..|...+.++..+
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e 364 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEE 364 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444445555555555555444433
No 159
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=86.18 E-value=1.1e+02 Score=39.13 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHH
Q 000499 429 QQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLE 474 (1460)
Q Consensus 429 qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE 474 (1460)
....+.+...-..+.....++.+....++.--..|..++.+...+.
T Consensus 269 ~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~ 314 (563)
T TIGR00634 269 RELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIK 314 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 3344444444444444444455544455444555555555544443
No 160
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.11 E-value=1e+02 Score=38.48 Aligned_cols=157 Identities=20% Similarity=0.176 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHH------------HHHhHHHHhhHhhHHHHHHH
Q 000499 420 EKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAE------------EKCLLLERSNQTLHSELESM 487 (1460)
Q Consensus 420 ekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE------------~~~~~LE~~~q~L~sE~e~L 487 (1460)
++-.+.-+|.-+++-...-|.--.++=.+=.|.+.||.-...+-+.+| +.+..|-+-...|++-.+++
T Consensus 251 EnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dkl 330 (502)
T KOG0982|consen 251 ENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKL 330 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444455555666555555544444 44444444444444444444
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhh--------
Q 000499 488 VQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGT-------- 559 (1460)
Q Consensus 488 ~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~-------- 559 (1460)
.+-.+-....| +.+.--+-.+..-+...--.|..++.-+--.|+=+--|..+++.+-...-..++
T Consensus 331 aee~qr~sd~L-------E~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p~rgrsSa 403 (502)
T KOG0982|consen 331 AEEDQRSSDLL-------EALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLANPVRGRSSA 403 (502)
T ss_pred hhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhH
Confidence 44433222222 222222222223333334466677777766677555666666655444334442
Q ss_pred chHhHHHHHHHHHHHhccCccccc
Q 000499 560 RNQSLQEEVEKVKEENKGLNELNL 583 (1460)
Q Consensus 560 ~k~~L~eev~~l~EEn~~L~e~n~ 583 (1460)
+-.-|..+|.+++..|..|.++|-
T Consensus 404 Re~eleqevkrLrq~nr~l~eqne 427 (502)
T KOG0982|consen 404 REIELEQEVKRLRQPNRILSEQNE 427 (502)
T ss_pred HHHHHHHHHHHhccccchhhhhhh
Confidence 344678999999999999988875
No 161
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.10 E-value=16 Score=39.53 Aligned_cols=100 Identities=24% Similarity=0.402 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhh
Q 000499 589 IKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSK 668 (1460)
Q Consensus 589 Ik~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~ 668 (1460)
+..++.|+..+.+.+..+..+.....+....++..+...++.+..+...+..+..++..+. ..+++.+.....
T Consensus 90 l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~-------~~~~~~~~~~~~ 162 (191)
T PF04156_consen 90 LQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ-------KELQDSREEVQE 162 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 5556666666666666666666655555555666666666777777777777776665553 567777777777
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000499 669 LKEVYERDRCEKVALLEKLEIMEKLLE 695 (1460)
Q Consensus 669 LkE~~s~~~~EK~~L~~kLq~mekLlE 695 (1460)
+...+.........+..+++..+.+++
T Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~~l~~ 189 (191)
T PF04156_consen 163 LRSQLERLQENLQQLEEKIQELQELLE 189 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777777766665554
No 162
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=86.04 E-value=28 Score=45.62 Aligned_cols=151 Identities=19% Similarity=0.263 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHHHHHhHhhhhcchhhHHHHHHHhhhhhhHHHH-------------------hhHHHHHHHHhhHHHHHh
Q 000499 1162 DVISEKLVKIADLSENLDKLGCINNELEEKVRLKDGKLEDVQM-------------------QNSLLKQSLEKSENELVA 1222 (1460)
Q Consensus 1162 ~~~~Ek~~~l~~L~e~l~~L~~~~~eL~~~v~~l~~kle~~e~-------------------en~~Lk~~le~~~~eL~~ 1222 (1460)
++-.|.+.. |.-|.+.|+-|.+.+++|+..|...+. -|.-|..-|.-+...+.-
T Consensus 380 niq~EIALA-------~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~ 452 (861)
T PF15254_consen 380 NIQVEIALA-------MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQEL 452 (861)
T ss_pred cchhhhHhh-------hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445565555 566788899999999999888754332 222222222223333333
Q ss_pred hhhhhh-------hhhhHhhhhhhhhhhhhHHHHHHHHHHHhhhHhhHHHHHHHhhhhhhhhhhH---------hHHhhh
Q 000499 1223 IGCVRD-------QLNCEIANGKDLLSRKEKELFVAEQILCSLQNERTELHMKVEDLTCKYDEAK---------IIQEDQ 1286 (1460)
Q Consensus 1223 ~~s~~~-------~l~~ei~~~~~~l~qkd~elleae~~~~~~~~~~~El~~~ve~Lk~~~eea~---------~i~e~~ 1286 (1460)
..+-++ .+-.+..+....+..||.+|++..+.+. --...+|.+.++|- .--.+-
T Consensus 453 lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d----------~e~~rik~ev~eal~~~k~~q~kLe~sek 522 (861)
T PF15254_consen 453 LQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFD----------IETTRIKIEVEEALVNVKSLQFKLEASEK 522 (861)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----------HHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Confidence 333333 3334444466677777877777766432 12223344444432 233467
Q ss_pred hhhHHhhhhhhhhhhhhHHhHHHhhHHHHHHHHHHHHHHhhhhhh
Q 000499 1287 GKQIRKLTEDYDCQIKETRCIHELNMKLEAELGKLLEELEGTRYR 1331 (1460)
Q Consensus 1287 ekqi~~Ls~~~~~q~~Ei~~l~e~N~~Le~e~~~L~~E~~~~k~r 1331 (1460)
|++|+.++-. .+|.||.-|++.+++||.=|.+|.-.+-.--+|
T Consensus 523 EN~iL~itlr--QrDaEi~RL~eLtR~LQ~Sma~lL~dls~D~ar 565 (861)
T PF15254_consen 523 ENQILGITLR--QRDAEIERLRELTRTLQNSMAKLLSDLSVDSAR 565 (861)
T ss_pred hhhHhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 8889887632 347799999999999999999998877665555
No 163
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=85.97 E-value=92 Score=38.75 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 333 AEADAVELSDRASKAEIEAQTLKLDL 358 (1460)
Q Consensus 333 aqeeak~lneRa~~AE~E~~~LKqel 358 (1460)
.+.....+..++..++.++..++..-
T Consensus 166 l~~ql~~~~~~L~~ae~~l~~f~~~~ 191 (498)
T TIGR03007 166 IDEQIKTYEKKLEAAENRLKAFKQEN 191 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444445555555666666665443
No 164
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=85.77 E-value=13 Score=44.16 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 397 NKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLH 453 (1460)
Q Consensus 397 n~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~ 453 (1460)
..++..++.+...++..-...+.+.-....++.+..+....+...+...+..+.||+
T Consensus 77 ~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 77 DQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666666667777777777777888888888888888888877776
No 165
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=85.33 E-value=1.1e+02 Score=38.40 Aligned_cols=105 Identities=22% Similarity=0.284 Sum_probs=57.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHh-hHHHHHHH
Q 000499 409 RLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQT-LHSELESM 487 (1460)
Q Consensus 409 ~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~-L~sE~e~L 487 (1460)
+|+..|..|.+++=.+.+.-.....++.+|...+...|..+.--+.|-+.+.-.|+-.=.....|+..-.+ ++.-...+
T Consensus 366 kLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksv 445 (527)
T PF15066_consen 366 KLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSV 445 (527)
T ss_pred HHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHH
Confidence 36777777777777777777777777777777777666555444444333333333333333333222221 11111111
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 000499 488 VQKMGSQSQELTEKQKELGRLWTCIQE 514 (1460)
Q Consensus 488 ~ekl~~~~qeL~eK~~Ei~~Lq~slq~ 514 (1460)
.+=+ ..++-|..|-.||++||...-+
T Consensus 446 sqcl-Emdk~LskKeeeverLQ~lkge 471 (527)
T PF15066_consen 446 SQCL-EMDKTLSKKEEEVERLQQLKGE 471 (527)
T ss_pred HHHH-HHHHHhhhhHHHHHHHHHHHHH
Confidence 1111 2455677788888888876644
No 166
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.98 E-value=1.5e+02 Score=39.45 Aligned_cols=63 Identities=21% Similarity=0.176 Sum_probs=28.9
Q ss_pred HHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 000499 452 LHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQE 514 (1460)
Q Consensus 452 L~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~ 514 (1460)
|+.|+..++.|++.+..+.++.+-.+...+.+.+.+........-++.+++.+|..+|..++.
T Consensus 442 l~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~ 504 (1118)
T KOG1029|consen 442 LQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQK 504 (1118)
T ss_pred HHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555444444444444444444433333333444444444444444443
No 167
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=84.75 E-value=78 Score=36.03 Aligned_cols=145 Identities=19% Similarity=0.191 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000499 343 RASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKE 422 (1460)
Q Consensus 343 Ra~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eeke 422 (1460)
.+...+........++.++..|+|.+.. .+..++..+..+-.+-++...-+..+++.=..|+....
T Consensus 56 ~i~e~~~~~~~~~~~i~~~~~erdq~~~--------------dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ 121 (207)
T PF05010_consen 56 MIEEKQKQKELSEAEIQKLLKERDQAYA--------------DLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIE 121 (207)
T ss_pred HHHHHHhhHHhHHHHHHHHHhhHHHHHH--------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3334444455555666666666665421 12222333333333444445555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHH
Q 000499 423 ALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQ 502 (1460)
Q Consensus 423 al~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~ 502 (1460)
.....+....++...|- .++.+.+++-+.||+....+. +.....|+..+.+..=+++++...|.+|-
T Consensus 122 ey~~~l~~~eqry~aLK---~hAeekL~~ANeei~~v~~~~----------~~e~~aLqa~lkk~e~~~~SLe~~LeQK~ 188 (207)
T PF05010_consen 122 EYEERLKKEEQRYQALK---AHAEEKLEKANEEIAQVRSKH----------QAELLALQASLKKEEMKVQSLEESLEQKT 188 (207)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544441 234444444444444443332 23456667777777777778888888998
Q ss_pred HHHHHHHHHHHH
Q 000499 503 KELGRLWTCIQE 514 (1460)
Q Consensus 503 ~Ei~~Lq~slq~ 514 (1460)
+|.+.|-.+--+
T Consensus 189 kEn~ELtkICDe 200 (207)
T PF05010_consen 189 KENEELTKICDE 200 (207)
T ss_pred HHHHHHHHHHHH
Confidence 888888777665
No 168
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=84.65 E-value=6 Score=38.50 Aligned_cols=63 Identities=33% Similarity=0.402 Sum_probs=55.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 000499 585 SAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVES 647 (1460)
Q Consensus 585 S~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~ 647 (1460)
+..+|.=||.||.-||+.+..|..|+..-...+.+|.++...++.+-..-..|..+|..-|..
T Consensus 16 AvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~~ 78 (79)
T PRK15422 16 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEE 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345788999999999999999999998778889999999999999999999999888776543
No 169
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.58 E-value=1.2e+02 Score=38.06 Aligned_cols=205 Identities=18% Similarity=0.196 Sum_probs=112.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhH----HHHHHHHHHHHHHHHHHHHH----------
Q 000499 246 LAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIA----EAEVQTLKEALARLETEREA---------- 311 (1460)
Q Consensus 246 i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~a----e~E~~sLk~~la~Lq~Ekea---------- 311 (1460)
...+++|..+-.+.|..--.+-+-++.++++.+ ..-.+-+|+..+ +.=+.-|+..++.++.....
T Consensus 243 neel~ae~kqh~v~~~ales~~sq~~e~~selE-~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~ 321 (521)
T KOG1937|consen 243 NEELQAEYKQHLVEYKALESKRSQFEEQNSELE-KLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQ 321 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367888888888888888888887777777777 445555554422 22334444444433322111
Q ss_pred -------HHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 000499 312 -------NIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALED 384 (1460)
Q Consensus 312 -------~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ 384 (1460)
-|.--..|+++=+.==..|-..+.+.....+++.+-+.....|+.++.++- +|+...-|-|
T Consensus 322 pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp--~dv~rk~ytq---------- 389 (521)
T KOG1937|consen 322 PLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLP--DDVQRKVYTQ---------- 389 (521)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCC--chhHHHHHHH----------
Confidence 111122333322211145555666777777888888888888888887773 2333322333
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 385 KLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEA-----------------LALQYQQCLEAISILEHKLARAEE 447 (1460)
Q Consensus 385 ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekea-----------------l~l~~qq~~~kI~~LE~els~sQE 447 (1460)
.|.....|++++...|-++-.+..+|++++..+.+-.+. ..-+.-.++..|-.--.++++.=.
T Consensus 390 rikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~ 469 (521)
T KOG1937|consen 390 RIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIR 469 (521)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233334556666666667777777787775544433322 111122345555555556666555
Q ss_pred HHHHHHHHHHhHHhhh
Q 000499 448 EAQRLHSELDNGFAKL 463 (1460)
Q Consensus 448 Ev~RL~~Ei~~~~~kL 463 (1460)
+-+++..++-.+..++
T Consensus 470 ~tg~~~revrdlE~qI 485 (521)
T KOG1937|consen 470 ETGALKREVRDLESQI 485 (521)
T ss_pred HcchHHHHHHHHHHHH
Confidence 6666666654444443
No 170
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=84.50 E-value=1.4e+02 Score=38.81 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 588 SIKNLQDEILSLRETIGKLEAEVE 611 (1460)
Q Consensus 588 sIk~LQdEi~~LkE~~~kLe~Ev~ 611 (1460)
.|..+++++..+.....+++.+.+
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~ 445 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIE 445 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666555554
No 171
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=84.49 E-value=1.8e+02 Score=40.00 Aligned_cols=80 Identities=24% Similarity=0.269 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000499 436 SILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEE 515 (1460)
Q Consensus 436 ~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E 515 (1460)
...+.+.....+.++.|..+++.....|+++.+........+..|..+.+.+..++....+++...+.++..++..+..+
T Consensus 437 ~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~ 516 (1041)
T KOG0243|consen 437 TQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEE 516 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777788888888888888888777767777888889999998888888888888888888888886654
No 172
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=84.41 E-value=1.9e+02 Score=40.27 Aligned_cols=53 Identities=6% Similarity=0.088 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 000499 601 ETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPE 653 (1460)
Q Consensus 601 E~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e 653 (1460)
+.+.+|=.++..+...-|.+.++....+.-.+.+..-...+.++++.++.++-
T Consensus 265 ~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~ 317 (1109)
T PRK10929 265 KINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNA 317 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHH
Confidence 44555555555566777889999999999999999999999999999987654
No 173
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=84.34 E-value=1.4e+02 Score=38.76 Aligned_cols=45 Identities=20% Similarity=0.337 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHH
Q 000499 261 RQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARL 305 (1460)
Q Consensus 261 ~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~L 305 (1460)
.....++..++.++...+.+...+.+.....+.++..+...+..+
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l 249 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESL 249 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666555555555444444444444444444333
No 174
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=83.83 E-value=1.3e+02 Score=38.38 Aligned_cols=34 Identities=9% Similarity=0.243 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhh
Q 000499 256 GLLQYRQSLERLSNLESEVSHAREDSKGLSEQAS 289 (1460)
Q Consensus 256 ~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~ 289 (1460)
.+-.|.....+|..+.+++...+.+...+..+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld 192 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLD 192 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 5667888888888888888877766544444433
No 175
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=83.67 E-value=1.1e+02 Score=36.85 Aligned_cols=66 Identities=21% Similarity=0.286 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHH
Q 000499 404 ESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEK 469 (1460)
Q Consensus 404 e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~ 469 (1460)
+..+..+...+...+.........+..+.++|..|...+..+..+..+|..+++....+|..+..=
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~L 285 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKL 285 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH
Confidence 555555666666666666677777777777788888888878878888888877777777766543
No 176
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=83.54 E-value=23 Score=44.43 Aligned_cols=137 Identities=24% Similarity=0.288 Sum_probs=89.4
Q ss_pred cchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhh
Q 000499 653 ENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEK 732 (1460)
Q Consensus 653 e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eK 732 (1460)
+.++..+|.+.++|..|.-.|...+.|-...-++=+. =+..+.+-|-|+|+.+-. +.
T Consensus 162 EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~------~y~~~~KelrdtN~q~~s-------~~---------- 218 (596)
T KOG4360|consen 162 EALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQ------LYGDCVKELRDTNTQARS-------GQ---------- 218 (596)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHH------HHHHHHHHHHHHHHHHHH-------HH----------
Confidence 4456667777777777777777666665554433222 133455666666644322 21
Q ss_pred hhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHH
Q 000499 733 STLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIA 812 (1460)
Q Consensus 733 S~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~ 812 (1460)
-.|+..+.-+...-|.++.|.+.+-|++.+..-++...+++-.-+++.++-+--+.
T Consensus 219 -----------eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~------------- 274 (596)
T KOG4360|consen 219 -----------EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLT------------- 274 (596)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------------
Confidence 12344455566667888889999999999999999999999999888877665444
Q ss_pred HHHHHHHHHHHHHHhhhhcchHHHH
Q 000499 813 RKGLKDLEKSYAELEGRYLGLEEEK 837 (1460)
Q Consensus 813 ~~~l~~lek~~~ele~k~~~lq~Ek 837 (1460)
.+++-++++|+++......++.|.
T Consensus 275 -aE~~EleDkyAE~m~~~~EaeeEL 298 (596)
T KOG4360|consen 275 -AELEELEDKYAECMQMLHEAEEEL 298 (596)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666665
No 177
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=82.96 E-value=84 Score=35.06 Aligned_cols=123 Identities=20% Similarity=0.265 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000499 290 IAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAV 369 (1460)
Q Consensus 290 ~ae~E~~sLk~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~ 369 (1460)
+++.=...|.+.|..++.....+-..+-.+.-.--.++.++..+...+.....+|..|-. ...|+.
T Consensus 20 ~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~-------------~g~edL- 85 (221)
T PF04012_consen 20 KAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALA-------------AGREDL- 85 (221)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------cCCHHH-
Confidence 333333555555554444444443333333333444555555555555555555533311 111111
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000499 370 VKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQY 428 (1460)
Q Consensus 370 lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~ 428 (1460)
...|+..+..++..+..++..+..+...++.++..+..++.+|..++...+.+..+.
T Consensus 86 --Ar~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 86 --AREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233555555555555555555555555555555555555555555555555544444
No 178
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=82.90 E-value=15 Score=43.65 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000499 353 TLKLDLARIEAEKEAAVVKYEECSRMIS 380 (1460)
Q Consensus 353 ~LKqel~~l~~EKEa~~lqyqQcLE~IS 380 (1460)
.|+..+.....|.+. |..|+..+.
T Consensus 13 ~l~~~~~~~~~E~~~----Y~~fL~~l~ 36 (314)
T PF04111_consen 13 QLDKQLEQAEKERDT----YQEFLKKLE 36 (314)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 344445555555553 777776665
No 179
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=82.83 E-value=98 Score=35.70 Aligned_cols=84 Identities=13% Similarity=0.158 Sum_probs=45.0
Q ss_pred HhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 000499 383 EDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAK 462 (1460)
Q Consensus 383 E~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~k 462 (1460)
...+..+...++.........+..+..+.+.+..|..+.+.+..+......+...+..........+.-|...|......
T Consensus 23 ~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~ 102 (264)
T PF06008_consen 23 LSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDN 102 (264)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444433333334455566666666666666666666666666666666555555555555555444444444
Q ss_pred hhhH
Q 000499 463 LKGA 466 (1460)
Q Consensus 463 L~~l 466 (1460)
+.++
T Consensus 103 i~~l 106 (264)
T PF06008_consen 103 IQEL 106 (264)
T ss_pred HHHH
Confidence 4433
No 180
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=82.38 E-value=1.6e+02 Score=37.81 Aligned_cols=91 Identities=21% Similarity=0.259 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhHhhhhHH
Q 000499 637 KHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIM-EKLLEKNAVLENSLSDLNVELEGVR 715 (1460)
Q Consensus 637 k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~m-ekLlEkns~LE~SLSdan~ELegLR 715 (1460)
+.+.++.+++.+-++.+.+...|+.-++-...|.. ......+++.|.+||=.- ..-.--|+-+-.+|+.|-.=.+.-+
T Consensus 455 ~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~-~t~e~ve~a~LaE~lIQY~NRYRs~~~~v~~~l~eAe~lF~~~~ 533 (570)
T COG4477 455 EIQDLMKELSEVPINMEAVSALVDIATEDMNTLED-ETEEVVENAVLAEQLIQYGNRYRSRNAEVAKSLNEAERLFENAF 533 (570)
T ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 45788999999999999999999988877766654 455667899999988663 4556678888888887765444333
Q ss_pred HHHHHHHHHHHHH
Q 000499 716 DKVKALEEVCQNL 728 (1460)
Q Consensus 716 eK~K~LEesc~sL 728 (1460)
.=-.++|...+.|
T Consensus 534 dY~~s~eia~qaL 546 (570)
T COG4477 534 DYDASFEIASQAL 546 (570)
T ss_pred chhHHHHHHHHHH
Confidence 3344455544443
No 181
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.41 E-value=9.3 Score=36.49 Aligned_cols=62 Identities=34% Similarity=0.393 Sum_probs=52.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000499 584 SSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQV 645 (1460)
Q Consensus 584 SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l 645 (1460)
.+..+|.=||.||.-|||.+..|.+|+.---..+++|.++..++|.+-..-..++.++.--|
T Consensus 15 qAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34558999999999999999999999986677889999999999988888888877776544
No 182
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=81.08 E-value=2.5e+02 Score=39.14 Aligned_cols=94 Identities=18% Similarity=0.237 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHH
Q 000499 265 ERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRA 344 (1460)
Q Consensus 265 ek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa 344 (1460)
.++|++|..|.+.+.-+. .. +.+...+..+-.++..|..+.-++...+-+=..+||+.-+....|..+...|..-+
T Consensus 1201 s~f~~me~kl~~ir~il~---~~-svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~ 1276 (1758)
T KOG0994|consen 1201 SRFLDMEEKLEEIRAILS---AP-SVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREF 1276 (1758)
T ss_pred hHHHHHHHHHHHHHHHhc---CC-CccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHH
Confidence 467888888877665432 22 12222333444444444444455555666667778877777777777777776666
Q ss_pred HHHHHHHHHHHHHHhhHH
Q 000499 345 SKAEIEAQTLKLDLARIE 362 (1460)
Q Consensus 345 ~~AE~E~~~LKqel~~l~ 362 (1460)
.....-++.|+..+.++.
T Consensus 1277 ~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1277 NGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 666666666666666653
No 183
>PF15294 Leu_zip: Leucine zipper
Probab=80.72 E-value=1.3e+02 Score=35.74 Aligned_cols=52 Identities=29% Similarity=0.442 Sum_probs=43.9
Q ss_pred CcccccccH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHH
Q 000499 578 LNELNLSSA-----ESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKE 629 (1460)
Q Consensus 578 L~e~n~SS~-----~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lke 629 (1460)
|.|.+-+.. -.|..||.||.+||+....++...+.+.+||..|+..+..+..
T Consensus 118 L~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 118 LEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556655522 2799999999999999999999999999999999999966666
No 184
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=80.43 E-value=1e+02 Score=34.38 Aligned_cols=120 Identities=20% Similarity=0.309 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 240 LTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQC 319 (1460)
Q Consensus 240 ~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~LlqykqC 319 (1460)
..|.-.|-.++..-.-+.-+.-........++.++..+...+..+..+|..| +..=.+.|| -.++.....|
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A---l~~g~edLA------r~al~~k~~~ 96 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA---LAAGREDLA------REALQRKADL 96 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCHHHH------HHHHHHHHHH
Confidence 4444455555555445555555555555556666666666555555554333 222233343 3455677788
Q ss_pred HHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000499 320 LDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAA 368 (1460)
Q Consensus 320 lE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~ 368 (1460)
.+.+..++..+..+...+..+...+.+++.++..++.....+..-...+
T Consensus 97 e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a 145 (221)
T PF04012_consen 97 EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAA 145 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888777777666665544443
No 185
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=80.43 E-value=73 Score=37.64 Aligned_cols=146 Identities=23% Similarity=0.276 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHh
Q 000499 496 QELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEEN 575 (1460)
Q Consensus 496 qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn 575 (1460)
++-.++|=-++.|...+++..+++-+.-+.... |..|.+.+.....+++.+++.|.-++..-
T Consensus 32 KE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~--------------LkREnq~l~e~c~~lek~rqKlshdlq~K---- 93 (307)
T PF10481_consen 32 KERQQRQFQLESLEAALQKQKQKVEEEKNEYSA--------------LKRENQSLMESCENLEKTRQKLSHDLQVK---- 93 (307)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhh--------------hhhhhhhHHHHHHHHHHHHHHhhHHHhhh----
Confidence 455566677788888888877777665555544 77788888888888888888887665543
Q ss_pred ccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccch
Q 000499 576 KGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENF 655 (1460)
Q Consensus 576 ~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~ 655 (1460)
|. .|--|--.+++-|...++|+ +++...|.+++....-+.+.--.|...+..-.+|
T Consensus 94 ----e~------qv~~lEgQl~s~Kkqie~Le--------------qelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f 149 (307)
T PF10481_consen 94 ----ES------QVNFLEGQLNSCKKQIEKLE--------------QELKRCKSELERSQQAASSGDVSLNPCSTPQKSF 149 (307)
T ss_pred ----HH------HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhccCCccccccCCchhhc
Confidence 11 22334444556666555544 4555566666655444432222222222222222
Q ss_pred -----------hhhHHHHHHHhhhhHHHHHHhHHHHHHH
Q 000499 656 -----------GLSVKELQDENSKLKEVYERDRCEKVAL 683 (1460)
Q Consensus 656 -----------~~~VkeLQ~~n~~LkE~~s~~~~EK~~L 683 (1460)
.....+|++...+=-++-.++.+|-.+|
T Consensus 150 ~~p~tp~q~~~~sk~e~L~ekynkeveerkrle~e~k~l 188 (307)
T PF10481_consen 150 ATPLTPSQYYSDSKYEELQEKYNKEVEERKRLEAEVKAL 188 (307)
T ss_pred cCCCChhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3555655555554444444444444444
No 186
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.77 E-value=42 Score=41.74 Aligned_cols=83 Identities=25% Similarity=0.159 Sum_probs=69.5
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 000499 709 VELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSC 788 (1460)
Q Consensus 709 ~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~ 788 (1460)
++|++.|.....+=.-+.+|+.+-+.+.++|.++..-++..+.++.++.+....+..-=-.+......++.|++.+++..
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~ 426 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEERE 426 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 58889999988888889999999999999999999988888888888888877777666667778888888888888765
Q ss_pred HHh
Q 000499 789 LLL 791 (1460)
Q Consensus 789 ~~l 791 (1460)
...
T Consensus 427 ~~~ 429 (493)
T KOG0804|consen 427 KEA 429 (493)
T ss_pred HHH
Confidence 544
No 187
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=79.75 E-value=72 Score=38.23 Aligned_cols=147 Identities=22% Similarity=0.188 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 000499 721 LEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLIT 800 (1460)
Q Consensus 721 LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~ 800 (1460)
++.....|......+.+++..|..+++.+..-+..|.+++..|...+.. ++.-..+++.+= .+
T Consensus 142 legLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~-------L~~~~~e~~~~d----------~~ 204 (312)
T smart00787 142 LEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQ-------LKQLEDELEDCD----------PT 204 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHhCC----------HH
Confidence 4444455555555566666666666666665566665555555444433 333222222111 12
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhHH
Q 000499 801 ERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQ 880 (1460)
Q Consensus 801 Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is~Lq 880 (1460)
+...+...|..+...+....++.+++.+....+...++....+..+++..+..-.........++-..+..|-..+..|+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le 284 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 22222233333333333333333333333333333333333333444444433333344456677777777777777776
Q ss_pred HHhh
Q 000499 881 EEGL 884 (1460)
Q Consensus 881 Ee~~ 884 (1460)
.-.-
T Consensus 285 ~l~g 288 (312)
T smart00787 285 SLTG 288 (312)
T ss_pred HHhC
Confidence 5443
No 188
>PRK10698 phage shock protein PspA; Provisional
Probab=78.75 E-value=1.3e+02 Score=34.43 Aligned_cols=119 Identities=16% Similarity=0.188 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 234 KAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANI 313 (1460)
Q Consensus 234 kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~L 313 (1460)
+|+.=+..|.--|-.++..-..+.-..-..+..-..++.++..++..+.....+|..| ++.=.+.|| ..+|
T Consensus 21 kaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~A---l~~G~EdLA------r~AL 91 (222)
T PRK10698 21 KAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELA---LRKEKEDLA------RAAL 91 (222)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCHHHH------HHHH
Confidence 3333334444444444444444444455555555666666666666655555554333 333334454 4567
Q ss_pred HHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000499 314 RQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARI 361 (1460)
Q Consensus 314 lqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l 361 (1460)
...+.|.+++..|+..+......+..+..++.+.+.++..+|..-..|
T Consensus 92 ~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L 139 (222)
T PRK10698 92 IEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQAL 139 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999999888888888887777666666666655444443
No 189
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=77.75 E-value=1.6e+02 Score=37.75 Aligned_cols=56 Identities=32% Similarity=0.274 Sum_probs=37.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHH
Q 000499 414 LGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEK 469 (1460)
Q Consensus 414 l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~ 469 (1460)
+..-.+.++.|..+.++..++|..||.+-.+-.-|+.-.+..++..++++.+++..
T Consensus 297 l~sstes~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLeke 352 (518)
T PF10212_consen 297 LLSSTESREGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLEKE 352 (518)
T ss_pred HhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888889999999999999998877774433333333444556665555553
No 190
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=77.60 E-value=2.2e+02 Score=36.54 Aligned_cols=30 Identities=27% Similarity=0.301 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhHHHHH
Q 000499 309 REANIRQYQQCLDKLSNMEKNISRAEADAV 338 (1460)
Q Consensus 309 kea~LlqykqClE~Is~LE~~~s~aqeeak 338 (1460)
+|+---|.+|..|+|+.||..-.+..-+|.
T Consensus 304 ~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQ 333 (518)
T PF10212_consen 304 REGLAQQVQQSQEKIAKLEQEKEHWMLEAQ 333 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455455788899999988887666554444
No 191
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=77.57 E-value=2.5e+02 Score=37.14 Aligned_cols=185 Identities=21% Similarity=0.166 Sum_probs=105.0
Q ss_pred HHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHH-HHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHH
Q 000499 739 KNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAE-VEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLK 817 (1460)
Q Consensus 739 K~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~E-lE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~ 817 (1460)
.+.++.+|+.+-..++.-. +.=+..+-++..+ ++..+.+++....+-..+.++-+...++.++|.+.++---.-..
T Consensus 16 ~~~~~~eL~~IW~~igE~~---~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~ 92 (660)
T KOG4302|consen 16 CGNLLNELQKIWDEIGESE---TERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE 92 (660)
T ss_pred HHHHHHHHHHHHHHhCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 3444555777766655332 2222222233333 23455788888888888888888888888888888765443333
Q ss_pred HHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHH
Q 000499 818 DLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKA 897 (1460)
Q Consensus 818 ~lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~ 897 (1460)
... ..-..+.....+..-.++.++.+..-.+.+. .++-+||-.|
T Consensus 93 ~~~-------k~e~tLke~l~~l~~~le~lr~qk~eR~~ef-----------~el~~qie~l------------------ 136 (660)
T KOG4302|consen 93 ISD-------KIEGTLKEQLESLKPYLEGLRKQKDERRAEF-----------KELYHQIEKL------------------ 136 (660)
T ss_pred ccc-------ccCccHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH------------------
Confidence 000 0111333333444444444443333222222 1222222111
Q ss_pred HhhHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 898 LDAQIEIFITQKYIQDLKEK---NFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQLLEIL 974 (1460)
Q Consensus 898 ~~AqieifiLq~~l~Dl~~k---n~~ll~EcQk~~eas~~se~lIseLe~E~~~~q~e~~~L~~~~~~Lr~gi~qv~k~L 974 (1460)
-+++... +..+ .+..+.++..-+.+|......++.+....+..+..++..|+..+.+|
T Consensus 137 -------------~~~l~g~~~~~~~~------~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~L 197 (660)
T KOG4302|consen 137 -------------CEELGGPEDLPSFL------IADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVL 197 (660)
T ss_pred -------------HHHhcCCccCCccc------ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1112211 1111 12355666677778888888899999999999999999999999999
Q ss_pred hhcccCC
Q 000499 975 EIDADHG 981 (1460)
Q Consensus 975 ~i~~~~g 981 (1460)
+++...-
T Consensus 198 g~~~~~~ 204 (660)
T KOG4302|consen 198 GLDFSMT 204 (660)
T ss_pred CCCcccc
Confidence 9998843
No 192
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=77.42 E-value=1.6e+02 Score=34.76 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=11.8
Q ss_pred HHHHHHHHhHHHHHhHhHHHHH
Q 000499 317 QQCLDKLSNMEKNISRAEADAV 338 (1460)
Q Consensus 317 kqClE~Is~LE~~~s~aqeeak 338 (1460)
+.|.-.|..|..++.-+.-.+|
T Consensus 146 qe~~sqi~~lK~qq~Ps~~qlR 167 (330)
T KOG2991|consen 146 QECTSQIQYLKQQQQPSVAQLR 167 (330)
T ss_pred HHHHHHHHHHHHhhCcHHHHHH
Confidence 4455555555555555555554
No 193
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=77.16 E-value=45 Score=42.87 Aligned_cols=81 Identities=23% Similarity=0.311 Sum_probs=55.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHH-------hHHHHhhHhhH
Q 000499 409 RLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKC-------LLLERSNQTLH 481 (1460)
Q Consensus 409 ~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~-------~~LE~~~q~L~ 481 (1460)
.++..+.+|.-+++++++|+.-+.+ .+.-+-+-|+-|-..|..-..+|+..|+-. +.||+.+..|.
T Consensus 108 ~yQerLaRLe~dkesL~LQvsvLte-------qVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLm 180 (861)
T KOG1899|consen 108 EYQERLARLEMDKESLQLQVSVLTE-------QVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLM 180 (861)
T ss_pred HHHHHHHHHhcchhhheehHHHHHH-------HHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHH
Confidence 4666777788888888888765433 333344555556666666666777766643 36888899999
Q ss_pred HHHHHHHHHhhhhhH
Q 000499 482 SELESMVQKMGSQSQ 496 (1460)
Q Consensus 482 sE~e~L~ekl~~~~q 496 (1460)
+|..+|.=++....+
T Consensus 181 aevSeLKLkltalEk 195 (861)
T KOG1899|consen 181 AEVSELKLKLTALEK 195 (861)
T ss_pred HHHHHhHHHHHHHHH
Confidence 999988877765443
No 194
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=77.13 E-value=2e+02 Score=35.88 Aligned_cols=66 Identities=20% Similarity=0.234 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHH-----HHHHhHHHHHhHhHHHHHHHH----HHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHH
Q 000499 309 REANIRQYQQCL-----DKLSNMEKNISRAEADAVELS----DRASKAEIEAQT----LKLDLARIEAEKEAAVVKYEE 374 (1460)
Q Consensus 309 kea~LlqykqCl-----E~Is~LE~~~s~aqeeak~ln----eRa~~AE~E~~~----LKqel~~l~~EKEa~~lqyqQ 374 (1460)
.|..+.||+.|. .+|-+||++--.-|-...-+. +-.+.+|.|-++ |=+-+-+|+.||+.....|.|
T Consensus 148 lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDq 226 (552)
T KOG2129|consen 148 LEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQ 226 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456666777665 556666655443333333222 233444555444 445556677777765554544
No 195
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=77.00 E-value=2e+02 Score=35.85 Aligned_cols=66 Identities=24% Similarity=0.276 Sum_probs=46.3
Q ss_pred HHHHHHHHHHH-----HHHHHHHhhhhhhhHhHHHHHHHHHHHHHHH--------HHHHHHHhhHHHHHHHHHHHHHHH
Q 000499 366 EAAVVKYEECS-----RMISALEDKLLHSEEDSKRINKVADKAESEV--------ERLKQALGKLTEEKEALALQYQQC 431 (1460)
Q Consensus 366 Ea~~lqyqQcL-----E~IS~LE~ki~~aee~~~~ln~~~e~~e~ev--------~~Lk~~l~~L~eekeal~l~~qq~ 431 (1460)
+..+.||+.|+ .+|-+||++-..-+.++..|..+...+++++ ..|=+.+.+|+.+++.++..|+|-
T Consensus 149 Eq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqp 227 (552)
T KOG2129|consen 149 EQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQP 227 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 45677899886 6888898886666666666655444443333 345566788999999999888854
No 196
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=76.80 E-value=44 Score=39.85 Aligned_cols=149 Identities=23% Similarity=0.295 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--h-hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHH
Q 000499 588 SIKNLQDEILSLRETIGKLEAEVELR--V-DQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQD 664 (1460)
Q Consensus 588 sIk~LQdEi~~LkE~~~kLe~Ev~~~--~-~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~ 664 (1460)
+++++.+++.-+-+...| =|... . +||.+|..++-.||..+..+..-+..+-.+. ++..-
T Consensus 78 s~r~lk~~l~evEekyrk---AMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~--------------~eK~~ 140 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRK---AMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY--------------REKIR 140 (302)
T ss_pred cHHHHHHHHHHHHHHHHH---HHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHH
Confidence 677887777666665544 23322 2 7999999999999999999998887666533 33344
Q ss_pred HhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhhHhhh----h-----HHHHHHHHHHH-HHHHHHh
Q 000499 665 ENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSL---SDLNVELE----G-----VRDKVKALEEV-CQNLLAE 731 (1460)
Q Consensus 665 ~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SL---Sdan~ELe----g-----LReK~K~LEes-c~sL~~e 731 (1460)
.+.-+|..+..+..|.+.|-++|..-+.|+++|-+.=.+= -|.+.++. + .++....|+.+ -.+|..-
T Consensus 141 elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvR 220 (302)
T PF09738_consen 141 ELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVR 220 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHH
Confidence 4678899999999999999999999999999976654432 22222222 1 23333444444 3445555
Q ss_pred hhhhhhhHHHHHhhhhHHHHHH
Q 000499 732 KSTLVAEKNSLFSQLQDVNENL 753 (1460)
Q Consensus 732 KS~L~sEK~~LvSQLq~~~~~l 753 (1460)
..-|+.||..|++|+......|
T Consensus 221 LkKl~~eke~L~~qv~klk~qL 242 (302)
T PF09738_consen 221 LKKLADEKEELLEQVRKLKLQL 242 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777665444
No 197
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=76.18 E-value=60 Score=34.31 Aligned_cols=94 Identities=29% Similarity=0.334 Sum_probs=50.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHH
Q 000499 409 RLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMV 488 (1460)
Q Consensus 409 ~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ 488 (1460)
.|...+..+..+++.+...+..+..++..++.++..++.....+...+......++..-++..-+....+..
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~-------- 127 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQR-------- 127 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 344455555566666666666666666666666666666666666665555555554433322221111111
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHH
Q 000499 489 QKMGSQSQELTEKQKELGRLWTCI 512 (1460)
Q Consensus 489 ekl~~~~qeL~eK~~Ei~~Lq~sl 512 (1460)
-..-..++.-+-.|+++|+.-+
T Consensus 128 --~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 128 --KTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHh
Confidence 1123346667777777777654
No 198
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=75.44 E-value=1.7e+02 Score=34.74 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhH
Q 000499 402 KAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLH 481 (1460)
Q Consensus 402 ~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~ 481 (1460)
++-.+|++|...+.+|+.++.-=+.+++.+.+++..--..+-..-.+.--|.+|.+.+..-..++|...+.|.-.++.=-
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke 94 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKE 94 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhH
Confidence 56778888888888888888888888888888888777777777777777888877766666666655444433333323
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 000499 482 SELESMVQKMGSQSQELTEKQKELGRLWTCIQE 514 (1460)
Q Consensus 482 sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~ 514 (1460)
....-+...+...-..++....+|.+++.-++.
T Consensus 95 ~qv~~lEgQl~s~Kkqie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 95 SQVNFLEGQLNSCKKQIEKLEQELKRCKSELER 127 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444445555555555555554
No 199
>PF13166 AAA_13: AAA domain
Probab=75.41 E-value=2.6e+02 Score=36.36 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=18.0
Q ss_pred HHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 000499 378 MISALEDKLLHSEEDSKRINKVADKAESEVERLKQA 413 (1460)
Q Consensus 378 ~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~ 413 (1460)
.++.+-..|..+.......|..+.+...+...++..
T Consensus 364 ~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~ 399 (712)
T PF13166_consen 364 DIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDK 399 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555555555544444
No 200
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=74.70 E-value=1.7e+02 Score=33.77 Aligned_cols=104 Identities=21% Similarity=0.159 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHh-----HHHHHHHHHHHHHHHHHHHH
Q 000499 338 VELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEED-----SKRINKVADKAESEVERLKQ 412 (1460)
Q Consensus 338 k~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~-----~~~ln~~~e~~e~ev~~Lk~ 412 (1460)
+++.+.+.+++.....+++.+++....+-...-+|++|...+..++.+-..|=.. ++..=.++..++..+..++.
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~ 106 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEA 106 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888889999999999988888888778888888888887774333111 11111223344444444444
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 413 ALGKLTEEKEALALQYQQCLEAISILEHK 441 (1460)
Q Consensus 413 ~l~~L~eekeal~l~~qq~~~kI~~LE~e 441 (1460)
.+....+..+.+......+..+|..+...
T Consensus 107 ~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~ 135 (225)
T COG1842 107 ELQQAEEQVEKLKKQLAALEQKIAELRAK 135 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444433
No 201
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=74.33 E-value=15 Score=35.23 Aligned_cols=53 Identities=28% Similarity=0.378 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 000499 587 ESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVE 646 (1460)
Q Consensus 587 ~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~ 646 (1460)
.+|.-||.||..|++.+..+. +++..|..+...++.+......+..++...|.
T Consensus 18 eti~~Lq~e~eeLke~n~~L~-------~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELK-------EENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 355666666666666665554 45667777777777777777777777766553
No 202
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=74.25 E-value=1e+02 Score=32.35 Aligned_cols=45 Identities=20% Similarity=0.345 Sum_probs=28.7
Q ss_pred HHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000499 473 LERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERL 517 (1460)
Q Consensus 473 LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~ 517 (1460)
|+.....++..-+.+.+-++-++.++++.+..|..++.+......
T Consensus 73 L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 73 LEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555666666777777777777777777777665443
No 203
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=74.19 E-value=89 Score=41.12 Aligned_cols=35 Identities=17% Similarity=0.089 Sum_probs=17.5
Q ss_pred HHHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHH
Q 000499 820 EKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEK 855 (1460)
Q Consensus 820 ek~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~ 855 (1460)
+.....+-+++ .-+.++-++++++-+|...+++-|
T Consensus 286 ~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnIRV~C 320 (670)
T KOG0239|consen 286 ESLEENLVEKK-KEKEERRKLHNEILELKGNIRVFC 320 (670)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCceEEE
Confidence 33333344444 333444566666666666655544
No 204
>PF14992 TMCO5: TMCO5 family
Probab=74.01 E-value=31 Score=40.67 Aligned_cols=41 Identities=24% Similarity=0.331 Sum_probs=31.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 411 KQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQR 451 (1460)
Q Consensus 411 k~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~R 451 (1460)
....-+|.+.++++...++..+.+|..|+.++...-.-+.|
T Consensus 10 e~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~ 50 (280)
T PF14992_consen 10 EKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADR 50 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCc
Confidence 33444577788888889999999999999999887655544
No 205
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=73.58 E-value=3.9e+02 Score=37.49 Aligned_cols=48 Identities=15% Similarity=0.114 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 404 ESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQR 451 (1460)
Q Consensus 404 e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~R 451 (1460)
..++..++..+...+.--+-...+.+-...++..++..+..-|+.+++
T Consensus 186 ~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 186 KALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444455555555555554444444
No 206
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=73.35 E-value=1.3e+02 Score=39.56 Aligned_cols=46 Identities=28% Similarity=0.302 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHH
Q 000499 428 YQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLL 473 (1460)
Q Consensus 428 ~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~L 473 (1460)
|.....++..++...+...+.++.|..++..+...+..+...+..+
T Consensus 222 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~ 267 (670)
T KOG0239|consen 222 YADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLL 267 (670)
T ss_pred hhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555544443333
No 207
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=73.21 E-value=2.1e+02 Score=34.33 Aligned_cols=91 Identities=19% Similarity=0.262 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhc
Q 000499 481 HSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTR 560 (1460)
Q Consensus 481 ~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~ 560 (1460)
..++.++...+.++++.|..-...+..|..-++.-+.-..+---.|-+++.--+|.|-.++-+...+++..++++---..
T Consensus 136 n~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~K 215 (305)
T PF14915_consen 136 NSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGK 215 (305)
T ss_pred cchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44556666666666777766666666666666665444444445555666666666666666666666555555554444
Q ss_pred hHhHHHHHHHH
Q 000499 561 NQSLQEEVEKV 571 (1460)
Q Consensus 561 k~~L~eev~~l 571 (1460)
-.++++-+..+
T Consensus 216 qes~eERL~Ql 226 (305)
T PF14915_consen 216 QESLEERLSQL 226 (305)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 208
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=72.80 E-value=2.2e+02 Score=37.87 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHh
Q 000499 418 TEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCL 471 (1460)
Q Consensus 418 ~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~ 471 (1460)
+.....+..++++-..+|..++++....++...+|+..++....+-..+.+++.
T Consensus 564 ~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 564 QRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444445555555555555555566666555555555555555544
No 209
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=72.38 E-value=3.3e+02 Score=36.06 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 000499 336 DAVELSDRASKAEIEAQTLKLDLA 359 (1460)
Q Consensus 336 eak~lneRa~~AE~E~~~LKqel~ 359 (1460)
....+..++..+|.++..+|+...
T Consensus 202 ql~~l~~~l~~aE~~l~~fk~~~~ 225 (754)
T TIGR01005 202 EIADLSKQSRDAEAEVAAYRAQSD 225 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444555555666666655433
No 210
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=71.54 E-value=80 Score=36.39 Aligned_cols=104 Identities=22% Similarity=0.343 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHh
Q 000499 496 QELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEEN 575 (1460)
Q Consensus 496 qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn 575 (1460)
.++..|-.++.++...|-.+...+-..+.-|. ....|...|..|.-...+.|.++....+.|+..|.....+.
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~-------e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er 76 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEEKCLE-------EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESER 76 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666554433333333333 34456666777777777777777777777777777776654
Q ss_pred ccCcccccccHHHHHHHHHHHHHHHHHHHHHHHH-HHHh
Q 000499 576 KGLNELNLSSAESIKNLQDEILSLRETIGKLEAE-VELR 613 (1460)
Q Consensus 576 ~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~E-v~~~ 613 (1460)
.... ..|..+++|...||+....+..+ +|+.
T Consensus 77 ~~~~-------~~i~r~~eey~~Lk~~in~~R~e~lgl~ 108 (230)
T PF10146_consen 77 NKRQ-------EKIQRLYEEYKPLKDEINELRKEYLGLE 108 (230)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3322 24778888888888888777777 6644
No 211
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.50 E-value=2.9e+02 Score=34.71 Aligned_cols=137 Identities=17% Similarity=0.177 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHH
Q 000499 308 EREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEEC--------SRMI 379 (1460)
Q Consensus 308 Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQc--------LE~I 379 (1460)
+.+..+.+|++|-+++-.+..++-+...++..--+-+...+..++.|-+-+.++.-....++.+|+.- ...+
T Consensus 139 q~eslle~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l 218 (446)
T KOG4438|consen 139 QLESLLELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKIL 218 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Confidence 34455567777777777777777777777776666667777777777777777777777777777631 2445
Q ss_pred HHHHhhhhhhhHhHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 380 SALEDKLLHSEEDSKRINKVAD----KAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLAR 444 (1460)
Q Consensus 380 S~LE~ki~~aee~~~~ln~~~e----~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~ 444 (1460)
+.|---|+.++++...|...|. ++...+++.+-.|.+.++-...+...+.-+.++|-.++.--..
T Consensus 219 ~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e 287 (446)
T KOG4438|consen 219 NALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKE 287 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5555666667777666655443 4555555555556665555566666666555555555544333
No 212
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=70.10 E-value=3.2e+02 Score=35.09 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcchhh
Q 000499 951 EEMRSLVDQIKVLRVQLYQLLEILEIDADHGCETKME 987 (1460)
Q Consensus 951 ~e~~~L~~~~~~Lr~gi~qv~k~L~i~~~~g~~d~~~ 987 (1460)
-|.+.+-..|..+|..+-.++..+++-...-|.-+|.
T Consensus 448 tE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~rkia 484 (531)
T PF15450_consen 448 TEGKAREREVGAVRQELATLLSSVQLLKEDNPGRKIA 484 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhHH
Confidence 4566777789999999999999999988877765443
No 213
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=69.58 E-value=2.1e+02 Score=32.71 Aligned_cols=173 Identities=21% Similarity=0.276 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHH
Q 000499 595 EILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYE 674 (1460)
Q Consensus 595 Ei~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s 674 (1460)
||+-||-.....+.||.....|--.|-..+...+..+.........+...+.+-+...+-...-+.-...+..-|++.+.
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~ 90 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLG 90 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Confidence 67777777777777777666655566555555555555555555555554444433333332222222222333333333
Q ss_pred HhHHHHHHHHHHHHHHHH-------H--HHHHHH----HhhhhhhhhHhhhhHHHHHHH----HHHHHHHHHHhhhhhhh
Q 000499 675 RDRCEKVALLEKLEIMEK-------L--LEKNAV----LENSLSDLNVELEGVRDKVKA----LEEVCQNLLAEKSTLVA 737 (1460)
Q Consensus 675 ~~~~EK~~L~~kLq~mek-------L--lEkns~----LE~SLSdan~ELegLReK~K~----LEesc~sL~~eKS~L~s 737 (1460)
....|-..|-..+..... + +...-. =.-.+..+..+++.||.-+.. .++.-.++..|.-+-..
T Consensus 91 ~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~e 170 (202)
T PF06818_consen 91 QLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQE 170 (202)
T ss_pred hhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333333333333322200 0 000000 012355666777777777654 56666788899999999
Q ss_pred hHHHHHhhhhHHHHHHHhhhhhhhhhhhhh
Q 000499 738 EKNSLFSQLQDVNENLKKLSDENNFLVNSL 767 (1460)
Q Consensus 738 EK~~LvSQLq~~~~~l~~L~Ekns~LE~sl 767 (1460)
||+..|-=.--+..++=..-.+|-.||..+
T Consensus 171 EKekVi~YQkQLQ~nYvqMy~rn~~LE~~l 200 (202)
T PF06818_consen 171 EKEKVIRYQKQLQQNYVQMYQRNQALEREL 200 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988655555555656666666666554
No 214
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.17 E-value=2.5e+02 Score=33.36 Aligned_cols=24 Identities=25% Similarity=0.030 Sum_probs=10.6
Q ss_pred HHHHHhhhhHHHHHHhHHHHHHHH
Q 000499 661 ELQDENSKLKEVYERDRCEKVALL 684 (1460)
Q Consensus 661 eLQ~~n~~LkE~~s~~~~EK~~L~ 684 (1460)
++.+-...|+-..+....||++|.
T Consensus 194 e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 194 EKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333333444444444444444443
No 215
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.89 E-value=3.5e+02 Score=35.03 Aligned_cols=642 Identities=21% Similarity=0.212 Sum_probs=308.0
Q ss_pred hhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHH--Hh
Q 000499 657 LSVKELQDENSKLKEVYERDRCEKVALLEKLEIME---KLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLL--AE 731 (1460)
Q Consensus 657 ~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~me---kLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~--~e 731 (1460)
..|.+|+-+..-|.++......+| .|.-+ .|+++..-|+.-+-.+-++.|..|.-+-.+.++..-.. +.
T Consensus 8 q~ve~lr~eierLT~el~q~t~e~------~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hk 81 (772)
T KOG0999|consen 8 QEVEKLRQEIERLTEELEQTTEEK------IQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHK 81 (772)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444433 22222 47788888888888888888888887776666554321 22
Q ss_pred hhh---hhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHh
Q 000499 732 KST---LVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQ 808 (1460)
Q Consensus 732 KS~---L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQ 808 (1460)
|++ .-.| ++| |+-...+=.-..-+.-.||+.|-.+..++...+...+.++.-.+.++..++.+-.+|..|-..
T Consensus 82 k~~~~g~e~E-esL---LqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~e 157 (772)
T KOG0999|consen 82 KVARDGEERE-ESL---LQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDE 157 (772)
T ss_pred HhhccchhhH-HHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 222 2211 111 222333334455566677777777777777777777777777777777777777777666665
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhh
Q 000499 809 LDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKK 888 (1460)
Q Consensus 809 l~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~ 888 (1460)
|.-..-+=..+=.+|++|++.-.++|+ +| ...+.|+-.+..+-..|..|.|+.-++..
T Consensus 158 lKe~KfRE~RllseYSELEEENIsLQK-------qV---------------s~LR~sQVEyEglkheikRleEe~elln~ 215 (772)
T KOG0999|consen 158 LKEYKFREARLLSEYSELEEENISLQK-------QV---------------SNLRQSQVEYEGLKHEIKRLEEETELLNS 215 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHH-------HH---------------HHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 555444444444445554444444332 22 33344555556666667777666655555
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000499 889 AYEEELDKALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLY 968 (1460)
Q Consensus 889 ~~eeE~dk~~~AqieifiLq~~l~Dl~~kn~~ll~EcQk~~eas~~se~lIseLe~E~~~~q~e~~~L~~~~~~Lr~gi~ 968 (1460)
.+++ .|.-+-|.|- +||+-..-.|.|++ +--.||..++
T Consensus 216 q~ee------------~~~Lk~IAek--------------------------QlEEALeTlq~ERe----qk~alkkEL~ 253 (772)
T KOG0999|consen 216 QLEE------------AIRLKEIAEK--------------------------QLEEALETLQQERE----QKNALKKELS 253 (772)
T ss_pred HHHH------------HHHHHHHHHH--------------------------HHHHHHHHHHhHHH----HHHHHHHHHH
Confidence 4442 2322222221 11111111222211 1223444444
Q ss_pred HHHHH--------HhhcccC-CCcchh----hhhhh--------------hHHHHHHHHhHHHHHHHHHHHhHhhhHHHH
Q 000499 969 QLLEI--------LEIDADH-GCETKM----EQDQS--------------HQTLLDQVTGKLKEMQISVLKALEQNHQVV 1021 (1460)
Q Consensus 969 qv~k~--------L~i~~~~-g~~d~~----~~e~~--------------l~~~l~~i~~~i~~l~~s~~~~q~enq~~~ 1021 (1460)
|.+.+ |.+..++ ..+|+. ..+.- ++-|+..++.++. -+.+..++..=..|-
T Consensus 254 q~~n~e~~~~~n~l~~sldgk~~eDga~pn~d~e~eh~~l~kl~~Dl~tel~~p~sDl~sel~--iseiqkLkqqL~smE 331 (772)
T KOG0999|consen 254 QYRNAEDISSLNHLLFSLDGKFGEDGAEPNNDPEEEHGALKKLASDLFTELQGPVSDLFSELN--ISEIQKLKQQLMSME 331 (772)
T ss_pred HhcchhhhhhhhhhheecccccccccCCCCCChhhhcchhhhccchhhhhccCchhHHHHHHH--HHHHHHHHHHHHHHH
Confidence 44333 2122221 111110 01100 1112233322211 111222233333344
Q ss_pred HHHHHHHHHHH-------HHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHhhhhhHHHHHH-H
Q 000499 1022 IENSILVALLG-------QLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEELRVEVAERNHTEEVLKT-E 1093 (1460)
Q Consensus 1022 vEnsvL~t~L~-------ql~~e~~~L~~Ek~~L~~E~~~~s~q~l~Lq~e~~eLle~n~qL~~~~~~~~~ree~lk~-E 1093 (1460)
-|+..|++-|. +..-+...-+.....|-+-+...+ .|| ..++.. |++=|....+++.++-.+.+ |
T Consensus 332 rek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~----rlq-~~~d~k--gEk~rdg~~kad~~e~~l~a~e 404 (772)
T KOG0999|consen 332 REKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALR----RLQ-DSKDKK--GEKGRDGGEKADLYEVDLNALE 404 (772)
T ss_pred HHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHH----HhH-Hhhhhh--ccccccccccchhHHhhhhhHH
Confidence 44444444332 222233333333333332222221 111 111111 45555555555555555544 1
Q ss_pred -----HHHHHHHHhHhHHHHHHhHhhhhhhhhhhhhHHHHhhhhHHhhhhhhhhhhh-HHHHHhhhccchhhhhhhHHHH
Q 000499 1094 -----MRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEKHSLEEENCV-MFVETISQSNLSHIFKDVISEK 1167 (1460)
Q Consensus 1094 -----~~~l~~~l~~l~~s~~~lq~e~~~~~~e~~sL~k~~~~l~e~~~~lEden~~-~l~E~i~~~~ls~~~~~~~~Ek 1167 (1460)
...-+....+|....-.|+.- -+.++++-.+.++++.+.++...+|.-+-+ +-.++-..+.++--...-..=-
T Consensus 405 ~~a~k~~~a~~e~i~lk~ql~~l~~~-~n~tde~~~~e~evq~l~~kl~llekasla~l~~evq~~t~ia~~~~~tl~~A 483 (772)
T KOG0999|consen 405 ILACKYAVAVDEMIQLKDQLKALYHQ-LNYTDEKVQYEKEVQELVEKLRLLEKASLAELEKEVQKATEIAEEGTETLVNA 483 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hcccchhhhHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHHHhcccccchhh
Confidence 222233344444444444433 566788888999999999999999988833 4444433333332222333334
Q ss_pred HHHHHHHHHhHhhhhcchhhHHHHHHHhhhhhhHHHHhh----HHHHHH---------------------HHhhHHHHHh
Q 000499 1168 LVKIADLSENLDKLGCINNELEEKVRLKDGKLEDVQMQN----SLLKQS---------------------LEKSENELVA 1222 (1460)
Q Consensus 1168 ~~~l~~L~e~l~~L~~~~~eL~~~v~~l~~kle~~e~en----~~Lk~~---------------------le~~~~eL~~ 1222 (1460)
-..|+.++++|+.|-+--+.-+.+.- ++...+.-.+. .....+ +.-+.+=.+.
T Consensus 484 ~~~lv~~SdeLaqlyh~vc~~n~etp--~rvmlD~~~e~~~~~ds~~~~~s~~~s~v~~~~pe~~~~~~g~~ds~~i~~~ 561 (772)
T KOG0999|consen 484 QDELVTFSDELAQLYHHVCECNNETP--NRVMLDYYRETDLRNDSPTGIQSPFKSPVFIAKPEIVEDLQGTADSMNIYNL 561 (772)
T ss_pred hHhHhhhhHHHHHHHHHHHHHcCCCC--chhhhhhhccccccCCCcccccCcccCchhhcCcccccccccccchHHHHHH
Confidence 45688899998876432222221110 01111100000 000000 0000001122
Q ss_pred hhhhhhhhhhH---hhhhhhhhhhhhHHHHHHHHHHHhhhHhhHHHHHHHhhhhhhhhhhHhHHhhhhhhHHhhhhhhhh
Q 000499 1223 IGCVRDQLNCE---IANGKDLLSRKEKELFVAEQILCSLQNERTELHMKVEDLTCKYDEAKIIQEDQGKQIRKLTEDYDC 1299 (1460)
Q Consensus 1223 ~~s~~~~l~~e---i~~~~~~l~qkd~elleae~~~~~~~~~~~El~~~ve~Lk~~~eea~~i~e~~ekqi~~Ls~~~~~ 1299 (1460)
+.-||+++-|= +...+... .+++ ..+|+- ..+...++.+..||++|-.--..
T Consensus 562 ~~~i~~qik~lq~av~~~~~~~----------~q~~-----~s~e~~----------~~~dk~~e~l~~~ilklksllst 616 (772)
T KOG0999|consen 562 IAIISDQIKHLQKAVDHTKELS----------RQRI-----ASQELG----------PAADKDKEALMEQILKLKSLLST 616 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHH-----HHHhcC----------chhhhHHHHHHHHHHHHHHHHHH
Confidence 22333322211 00001000 0001 001221 23344477888999999888888
Q ss_pred hhhhHHhHHHh---h-HHHHHHHHHHHHHHhhhhhhhhhh-hHHHHHhhhhHhhhHHHHHHHHhhhhHHHHHHHHHhhhh
Q 000499 1300 QIKETRCIHEL---N-MKLEAELGKLLEELEGTRYREESL-YHELEKERKHAGLWETQATELFSELQISSVCEVLRNEKA 1374 (1460)
Q Consensus 1300 q~~Ei~~l~e~---N-~~Le~e~~~L~~E~~~~k~rEe~L-~~elq~~~~e~el~E~ea~~l~~dlq~ssv~e~L~eekv 1374 (1460)
..+-|.-|+-+ | ++-++=+..|+.--+ -|+.+ +...-++|||..+....|++|-. .|+++-
T Consensus 617 kreqi~tlrtvlkankqtaevaltnlksKYE----nEK~mvtetm~KlRnELk~Lkedaatfss------lramf~---- 682 (772)
T KOG0999|consen 617 KREQITTLRTVLKANKQTAEVALTNLKSKYE----NEKAMVTETMDKLRNELKALKEDAATFSS------LRAMFA---- 682 (772)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhc----
Confidence 88888766543 3 333333444433111 12222 44566788999999999999855 665542
Q ss_pred HHHHHHHhhhhhhccchhhhHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHhhhHhHHhhh
Q 000499 1375 HELSRACENLEDRSNSNDIEINQLKEKANALECENGGLKAHLAASIPAVISLKDSIRSLE 1434 (1460)
Q Consensus 1375 ~El~~~ce~Le~~~~~k~~ei~~Lkerv~~le~En~~Lk~~Lsay~~~i~sL~d~i~~LE 1434 (1460)
.-|+-+ -+.++.|.-++++-+.|-.-|..-|.--...-.+|-.-+.-||
T Consensus 683 ----~R~ee~-------~tq~de~~~ql~aaedekKtln~llrmaiqqklaltqrle~~e 731 (772)
T KOG0999|consen 683 ----ARCEEY-------VTQLDELQRQLAAAEDEKKTLNQLLRMAIQQKLALTQRLEELE 731 (772)
T ss_pred ----chHHHH-------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 224322 2467888888999888877776666555554455555544443
No 216
>PRK11281 hypothetical protein; Provisional
Probab=68.78 E-value=4.9e+02 Score=36.63 Aligned_cols=53 Identities=19% Similarity=0.168 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 000499 601 ETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPE 653 (1460)
Q Consensus 601 E~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e 653 (1460)
+.+.+|=+++......-|.+.++..+.+.-++.+..-...+.++++.++.++-
T Consensus 285 ~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~s~~ 337 (1113)
T PRK11281 285 EINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSLL 337 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 33444444455466677888999989999999999888888999988876543
No 217
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=68.66 E-value=2.9e+02 Score=33.91 Aligned_cols=300 Identities=18% Similarity=0.245 Sum_probs=0.0
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCCC-CcccCCCCccccccccccchhhhHhhhhCCCCCC---Ccccccccccccccc
Q 000499 104 FPNQVPFALGDDSPAGTEADPRTPELA-PARAIFYPDELQNDSLGLSSSHLLALKKNGAFTD---DSDTVTSRRGLKQLN 179 (1460)
Q Consensus 104 ~p~~~~~~m~dd~~~~~~~~p~~p~~~-~~~~~~~p~~~~kd~~g~~~~~~~~~k~ng~~~~---~~~~~~~kk~~k~~n 179 (1460)
+|+.++-..++++...++...+..=-| .++..|-|..+ |+-|+.-|--.+.||.-+|.. ....+....|-+-
T Consensus 15 l~~~~~~~~~~~~~~~~~~I~~~~l~~~~A~~kF~~~~v--da~~vDFSd~i~~krr~~~~~~~~~~e~~g~~~~e~E-- 90 (388)
T PF04912_consen 15 LPEDVQTSSDDDDEDESEDIERSRLNPDEARSKFKGARV--DARGVDFSDRISKKRRSGYRSRSGEYEILGDDSSEKE-- 90 (388)
T ss_pred CCccccccCCCCccccccchhhcCCCHHHHHHHhCcCcC--CCCCCCchhhcccccccccccCCCceeecCCCCCCcC--
Q ss_pred cccCCCCcccccccCccccccCCCccchhhhhhhhhcccccccccCCChhhhhhhhHHHHHHHHHHHHHHHhHHHHH---
Q 000499 180 DFLGSGEKVTHGKFGEGRARKGLNFHDAEENEQLQHNESYDIKARVPSESERMGKAEMEILTLKNALAKLEAEKEAG--- 256 (1460)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~l~f~~~~~e~s~l~~e~~~~~~~~~sesER~~kAe~EI~~Lkk~i~~LqtEKE~~--- 256 (1460)
|..+|-..-..||..|+..+...++....+
T Consensus 91 -----------------------------------------------s~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e 123 (388)
T PF04912_consen 91 -----------------------------------------------SPEQKLQRLRREVEELKEELEKRKADSKESDEE 123 (388)
T ss_pred -----------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Q 000499 257 LLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQ------------------- 317 (1460)
Q Consensus 257 ~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~Llqyk------------------- 317 (1460)
...+..-...+..|..++..+ .++..... ..+..+-..-..+-...-+.+-.++
T Consensus 124 ~~~~~~l~~~~~~L~~~L~~l-----~l~~~lg~--~~~~~~~~~~~~~~~kl~~~l~~~k~~~~~~~~~~~~~~ityel 196 (388)
T PF04912_consen 124 KISPEELAQQLEELSKQLDSL-----KLEELLGE--ETAQDLSDPQKALSKKLLSQLESFKSSSGAGSSPANSDHITYEL 196 (388)
T ss_pred cCChhhHHHHHHHHHHHHHHh-----hcccccch--hhhcccccchhhHHHHHHHhhhhcccccccCCCCCCCCceeeee
Q ss_pred ---------HHHHHHHhHHHHHhHhHHHHHH----------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000499 318 ---------QCLDKLSNMEKNISRAEADAVE----------------LSDRASKAEIEAQTLKLDLARIEAEKEAAVVKY 372 (1460)
Q Consensus 318 ---------qClE~Is~LE~~~s~aqeeak~----------------lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqy 372 (1460)
+-+-+++.||.++...+.=++. +...+.....++..|-.
T Consensus 197 ~~~p~~~~~~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~---------------- 260 (388)
T PF04912_consen 197 YYPPEQAKSQQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDP---------------- 260 (388)
T ss_pred ecCcccchhhHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCH----------------
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHHHHHHHHHH------HHHHHHHHHHHhhHHHHHHH-------------HHHHHHHHHH
Q 000499 373 EECSRMISALEDKLLHSEEDSKRINKVADKA------ESEVERLKQALGKLTEEKEA-------------LALQYQQCLE 433 (1460)
Q Consensus 373 qQcLE~IS~LE~ki~~aee~~~~ln~~~e~~------e~ev~~Lk~~l~~L~eekea-------------l~l~~qq~~~ 433 (1460)
..++.++.+|..+-.+...+...-..+ +.+|.+|=..+.++..-... +|.+..++..
T Consensus 261 ----~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~ 336 (388)
T PF04912_consen 261 ----AKLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQ 336 (388)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh----hHHHHHhHHHHhhHhhH
Q 000499 434 AISILEHKLARAEEEAQRLHSELDNGFAKLK----GAEEKCLLLERSNQTLH 481 (1460)
Q Consensus 434 kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~----~lE~~~~~LE~~~q~L~ 481 (1460)
.|..|+.....-+..++....=|.....++. .++..+..||..+..|+
T Consensus 337 ~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 337 TLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 218
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=68.63 E-value=48 Score=34.24 Aligned_cols=75 Identities=27% Similarity=0.325 Sum_probs=37.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHH-HHhhhhcchHHH
Q 000499 761 NFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYA-ELEGRYLGLEEE 836 (1460)
Q Consensus 761 s~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~-ele~k~~~lq~E 836 (1460)
.-|+.++-+.+...+.|-..=+.|+...+.+..++.+...+.+.|..+|..+...+.. +|.+- +++.++.-.++.
T Consensus 19 a~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~-eK~ak~~l~~r~~k~~~d 94 (107)
T PF09304_consen 19 ASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED-EKQAKLELESRLLKAQKD 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 3344444455554445544445555555555555555555555555555555555554 22222 444444444333
No 219
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=68.59 E-value=2.9e+02 Score=33.89 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=8.2
Q ss_pred HHHHHHhhHHHHHHHHHHHH
Q 000499 353 TLKLDLARIEAEKEAAVVKY 372 (1460)
Q Consensus 353 ~LKqel~~l~~EKEa~~lqy 372 (1460)
.|++.+..++.+.......|
T Consensus 258 ~l~~~l~~le~~l~~l~~~y 277 (444)
T TIGR03017 258 NLKTDIARAESKLAELSQRL 277 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444333333
No 220
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=67.53 E-value=5.5e+02 Score=36.78 Aligned_cols=26 Identities=23% Similarity=0.133 Sum_probs=17.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHH
Q 000499 231 RMGKAEMEILTLKNALAKLEAEKEAG 256 (1460)
Q Consensus 231 R~~kAe~EI~~Lkk~i~~LqtEKE~~ 256 (1460)
|..-=..-|..|...|..|..+-+..
T Consensus 736 R~~~R~~ri~el~~~IaeL~~~i~~l 761 (1353)
T TIGR02680 736 RERARLRRIAELDARLAAVDDELAEL 761 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444566888888888887665543
No 221
>PRK10869 recombination and repair protein; Provisional
Probab=66.47 E-value=3.8e+02 Score=34.56 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhHHhhhhhHHHHHhHH
Q 000499 448 EAQRLHSELDNGFAKLKGAEEKCLLL 473 (1460)
Q Consensus 448 Ev~RL~~Ei~~~~~kL~~lE~~~~~L 473 (1460)
++.+....++.--.+|..+|++...+
T Consensus 283 ~l~~~~~~~~~dp~~l~~ie~Rl~~l 308 (553)
T PRK10869 283 ELRHYLDRLDLDPNRLAELEQRLSKQ 308 (553)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 33333333333344455555554433
No 222
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=66.46 E-value=3.5e+02 Score=34.10 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHH
Q 000499 268 SNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLET 307 (1460)
Q Consensus 268 ~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~ 307 (1460)
-+|+.++...+.+|..|.+--..|..---.+|+.-.+|+.
T Consensus 218 ~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvh 257 (502)
T KOG0982|consen 218 IDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVH 257 (502)
T ss_pred hhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHH
Confidence 4677777777777777765444555545556666555443
No 223
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=66.13 E-value=96 Score=38.87 Aligned_cols=50 Identities=20% Similarity=0.215 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHH--HHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 309 REANIRQYQQCL--DKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDL 358 (1460)
Q Consensus 309 kea~LlqykqCl--E~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel 358 (1460)
++.+.++|..-. ..+..||.-+..-|-||+|+..||++|..|++.|+.=.
T Consensus 336 k~~~e~~~~~~~kk~~~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~LqrI~ 387 (446)
T PF07227_consen 336 KEVAELQFERQRKKPQIEELESIVRIKQAEAKMFQLKADEARREAEGLQRIA 387 (446)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544333 35889999999999999999999999999999998733
No 224
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=66.06 E-value=4.6e+02 Score=35.32 Aligned_cols=31 Identities=26% Similarity=0.199 Sum_probs=16.1
Q ss_pred HHHHHHhhhchHhHHHHHHHHHHHhccCccc
Q 000499 551 AQILKDMGTRNQSLQEEVEKVKEENKGLNEL 581 (1460)
Q Consensus 551 ~~~L~~le~~k~~L~eev~~l~EEn~~L~e~ 581 (1460)
.-+|...+..|+.|.-.|+....|+..|+|+
T Consensus 514 q~kLe~sekEN~iL~itlrQrDaEi~RL~eL 544 (861)
T PF15254_consen 514 QFKLEASEKENQILGITLRQRDAEIERLREL 544 (861)
T ss_pred hhhHHHHHhhhhHhhhHHHHHHHHHHHHHHH
Confidence 3344555555555555555555554444444
No 225
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=65.97 E-value=3.7e+02 Score=34.21 Aligned_cols=73 Identities=23% Similarity=0.311 Sum_probs=45.6
Q ss_pred HhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 383 EDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQ-------QCLEAISILEHKLARAEEEAQRLHSE 455 (1460)
Q Consensus 383 E~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~q-------q~~~kI~~LE~els~sQEEv~RL~~E 455 (1460)
+..+..+++.+......+..-+.+-+.|.-++.+++...-.++.+|. ..+..-..|+.-+++..++|.||+..
T Consensus 389 ~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~l 468 (527)
T PF15066_consen 389 EKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQL 468 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33444444444333344444556666677777777777777777776 23344567888899999999997643
No 226
>PRK10698 phage shock protein PspA; Provisional
Probab=65.67 E-value=2.5e+02 Score=32.13 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 000499 368 AVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQA 413 (1460)
Q Consensus 368 ~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~ 413 (1460)
++.+.+.|-+.|..|+..+...+..+..|...+..++.++...+.+
T Consensus 90 AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k 135 (222)
T PRK10698 90 ALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRAR 135 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677888888888887777777777766666666666555555
No 227
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=65.65 E-value=18 Score=34.29 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=53.9
Q ss_pred HhhhhHHHHHHHhhhhhhccchhhhHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHhhhHhHHhhhhhc
Q 000499 1370 RNEKAHELSRACENLEDRSNSNDIEINQLKEKANALECENGGLKAHLAASIPAVISLKDSIRSLENHT 1437 (1460)
Q Consensus 1370 ~eekv~El~~~ce~Le~~~~~k~~ei~~Lkerv~~le~En~~Lk~~Lsay~~~i~sL~d~i~~LE~~t 1437 (1460)
++.||-.|+.-|+.|. .++..|+.++.++..|.+.|......--.-|-++=..+.+||.+|
T Consensus 5 Le~kle~Li~~~~~L~-------~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq~~ 65 (65)
T TIGR02449 5 LAAQVEHLLEYLERLK-------SENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQHT 65 (65)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Confidence 5678999999998887 678899999999999999999999988888888888888888775
No 228
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=65.02 E-value=3e+02 Score=32.90 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHhHH
Q 000499 234 KAEMEILTLKNALAKLEAEK 253 (1460)
Q Consensus 234 kAe~EI~~Lkk~i~~LqtEK 253 (1460)
.++.++..++..+..|+++.
T Consensus 85 ~l~~~~~~l~a~~~~l~~~~ 104 (423)
T TIGR01843 85 ELESQVLRLEAEVARLRAEA 104 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555443
No 229
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=64.87 E-value=78 Score=31.20 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhhhhhhHh
Q 000499 375 CSRMISALEDKLLHSEED 392 (1460)
Q Consensus 375 cLE~IS~LE~ki~~aee~ 392 (1460)
+++..+.||.+|..|=+.
T Consensus 2 S~EvleqLE~KIqqAvdt 19 (79)
T PRK15422 2 SLEVFEKLEAKVQQAIDT 19 (79)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 356677777776555433
No 230
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=63.82 E-value=5.7e+02 Score=35.59 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=9.6
Q ss_pred HhhcccCCCcchhhhhh
Q 000499 974 LEIDADHGCETKMEQDQ 990 (1460)
Q Consensus 974 L~i~~~~g~~d~~~~e~ 990 (1460)
|=||.+.|+.|....+.
T Consensus 979 l~lDEp~~~lD~~~~~~ 995 (1047)
T PRK10246 979 LFLDEGFGTLDSETLDT 995 (1047)
T ss_pred EEEeCCCCcCCHHHHHH
Confidence 44566666666554444
No 231
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=63.81 E-value=33 Score=39.15 Aligned_cols=74 Identities=23% Similarity=0.272 Sum_probs=49.0
Q ss_pred HHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhh
Q 000499 751 ENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRY 830 (1460)
Q Consensus 751 ~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~ 830 (1460)
..+.+..++.+.|+.....++++++.++.+++... .+.....+++..++.....+.++|..+.++|
T Consensus 137 ~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~--------------~~Le~~~~~~~al~Kq~e~~~~EydrLlee~ 202 (216)
T KOG1962|consen 137 EALKKQLENSSKLEEENDKLKADLEKLETELEKKQ--------------KKLEKAQKKVDALKKQSEGLQDEYDRLLEEY 202 (216)
T ss_pred HHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 33444444444466666777777777766666553 4455566677777777777888888888888
Q ss_pred cchHHHHH
Q 000499 831 LGLEEEKE 838 (1460)
Q Consensus 831 ~~lq~Ek~ 838 (1460)
..+|..++
T Consensus 203 ~~Lq~~i~ 210 (216)
T KOG1962|consen 203 SKLQEQIE 210 (216)
T ss_pred HHHHHHHh
Confidence 88777664
No 232
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=63.24 E-value=2e+02 Score=30.33 Aligned_cols=132 Identities=18% Similarity=0.228 Sum_probs=77.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 000499 709 VELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSC 788 (1460)
Q Consensus 709 ~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~ 788 (1460)
.||..|-.--..+.+++..+.. ...+..++..+..+... |-+.|-.++..+.+...++......++.++..+
T Consensus 7 ~eL~~Ll~d~~~l~~~v~~l~~-~~~~~~~~~~l~~~n~~-------lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~ 78 (150)
T PF07200_consen 7 EELQELLSDEEKLDAFVKSLPQ-VQELQQEREELLAENEE-------LAEQNLSLEPELEELRSQLQELYEELKELESEY 78 (150)
T ss_dssp HHHHHHHHH-HHHHHHGGGGS---HHHHHHHHHHHHHHHH-------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHH-------HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554444455555555433 33355555555554443 466777777777777777777777777777777
Q ss_pred HHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHH
Q 000499 789 LLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQF 849 (1460)
Q Consensus 789 ~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~ 849 (1460)
.........+ +.+-+.-.-+..++......+.+-..+-++..+-..+.+.++.+-.+++.
T Consensus 79 ~~k~~~~~~l-~~~~s~~~l~~~L~~~~~e~eeeSe~lae~fl~g~~d~~~Fl~~f~~~R~ 138 (150)
T PF07200_consen 79 QEKEQQQDEL-SSNYSPDALLARLQAAASEAEEESEELAEEFLDGEIDVDDFLKQFKEKRK 138 (150)
T ss_dssp HHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHHHC-S-SSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 7776665555 44444445556666667777777777777777766777777777666554
No 233
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=63.12 E-value=4e+02 Score=33.59 Aligned_cols=37 Identities=11% Similarity=0.284 Sum_probs=20.7
Q ss_pred HHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 321 DKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLD 357 (1460)
Q Consensus 321 E~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqe 357 (1460)
..|+.++.++..++-+...++.++.+.+..+..|...
T Consensus 73 ~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 73 TEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 3445555555566666666665555555555555443
No 234
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=62.70 E-value=2.1e+02 Score=30.28 Aligned_cols=97 Identities=18% Similarity=0.280 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 000499 428 YQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGR 507 (1460)
Q Consensus 428 ~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~ 507 (1460)
...+..++..+...+.+.+..+.||...+...... +..++.....+...+......+.....++.+
T Consensus 54 ~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere--------------~~~~~~~~~~l~~~~~~~~~~~k~~kee~~k 119 (151)
T PF11559_consen 54 REDLSDKLRRLRSDIERLQNDVERLKEQLEELERE--------------LASAEEKERQLQKQLKSLEAKLKQEKEELQK 119 (151)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555544443333333 3333444444444444455555666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Q 000499 508 LWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILK 555 (1460)
Q Consensus 508 Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~ 555 (1460)
++..++. .-++..-|++.-..||.++...|.
T Consensus 120 lk~~~~~-----------------~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 120 LKNQLQQ-----------------RKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777665 223445778888888888877664
No 235
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=62.44 E-value=3.7e+02 Score=32.96 Aligned_cols=53 Identities=11% Similarity=0.101 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHh
Q 000499 439 EHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKM 491 (1460)
Q Consensus 439 E~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl 491 (1460)
-+.+.++++=+-+.+.+++++-.-+.-+++.++-|+.++++++-+.-...+..
T Consensus 112 ~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeees 164 (401)
T PF06785_consen 112 KNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEES 164 (401)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHH
Confidence 34566666666677777666666666666665555555555544444444444
No 236
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=62.39 E-value=1.3e+02 Score=33.79 Aligned_cols=55 Identities=27% Similarity=0.421 Sum_probs=37.1
Q ss_pred HHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000499 378 MISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCL 432 (1460)
Q Consensus 378 ~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~ 432 (1460)
.|.+|+.+|..++.....+....+....++..++..+..++++...+..+|+...
T Consensus 132 ~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 132 EIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666666666666666655556667777777777777777777777776543
No 237
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=62.37 E-value=69 Score=30.83 Aligned_cols=7 Identities=43% Similarity=0.776 Sum_probs=2.7
Q ss_pred HHHHHhh
Q 000499 379 ISALEDK 385 (1460)
Q Consensus 379 IS~LE~k 385 (1460)
.+.||.+
T Consensus 6 l~~LE~k 12 (72)
T PF06005_consen 6 LEQLEEK 12 (72)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3334444
No 238
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=62.04 E-value=2.3e+02 Score=34.83 Aligned_cols=48 Identities=13% Similarity=0.256 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHH
Q 000499 422 EALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEK 469 (1460)
Q Consensus 422 eal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~ 469 (1460)
..=...++|+..-..+++..+......++||..+|..-..|+.+-|..
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~ 263 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKY 263 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666667777777888888888888888888776654
No 239
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=61.99 E-value=1.2e+02 Score=34.26 Aligned_cols=91 Identities=24% Similarity=0.225 Sum_probs=48.2
Q ss_pred HHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHhhc
Q 000499 571 VKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKH--QAMVEQVESV 648 (1460)
Q Consensus 571 l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~--~~l~e~l~~l 648 (1460)
|--|+++|.+.|. .||++|-.|++.|..|-. .++.+-|=+ .+-. ...+| ..|..+|..-
T Consensus 53 hl~EIR~LKe~Nq-------kLqedNqELRdLCCFLDd--dRqKgrkla--rEWQ--------rFGryta~vmr~eV~~Y 113 (195)
T PF10226_consen 53 HLNEIRGLKEVNQ-------KLQEDNQELRDLCCFLDD--DRQKGRKLA--REWQ--------RFGRYTASVMRQEVAQY 113 (195)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHcccch--hHHHhHHHh--HHHH--------HhhhHHHHHHHHHHHHH
Confidence 4445566666654 788889999998887744 233333311 1110 01122 1233333222
Q ss_pred CCCccchhhhHHHHHHHhhhhHHHHHHhHHHH
Q 000499 649 SLNPENFGLSVKELQDENSKLKEVYERDRCEK 680 (1460)
Q Consensus 649 ~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK 680 (1460)
--.+..+.....+|-.+|..||+.|-.+..|+
T Consensus 114 ~~KL~eLE~kq~~L~rEN~eLKElcl~LDeer 145 (195)
T PF10226_consen 114 QQKLKELEDKQEELIRENLELKELCLYLDEER 145 (195)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhccc
Confidence 11111222244555667999999998887765
No 240
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=61.55 E-value=3.2e+02 Score=35.10 Aligned_cols=127 Identities=17% Similarity=0.207 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000499 236 EMEILTLKNALAKLEAEKEAG----LLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREA 311 (1460)
Q Consensus 236 e~EI~~Lkk~i~~LqtEKE~~----~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea 311 (1460)
+.|+-.|.-....|.+|-=.. -..|.-|+-++-+.-.++.-+|+.+.+... .
T Consensus 172 ~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~--------------e---------- 227 (596)
T KOG4360|consen 172 EEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTK--------------E---------- 227 (596)
T ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H----------
Confidence 455566655555555543221 234666666666666666665554333322 2
Q ss_pred HHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 000499 312 NIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSE 390 (1460)
Q Consensus 312 ~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~ae 390 (1460)
..+=.|-+++|.+++-.+++.++++.=..+..-.=+.+.++.--.++.|.+..-=+|-.|+...++-++++.++.
T Consensus 228 ----l~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 228 ----LSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred ----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 233346678888888888888888876666666667777777777777777766678899988877776655554
No 241
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=61.13 E-value=6.1e+02 Score=35.11 Aligned_cols=85 Identities=15% Similarity=0.242 Sum_probs=57.0
Q ss_pred HhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHH
Q 000499 743 FSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKS 822 (1460)
Q Consensus 743 vSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~ 822 (1460)
+-++...+..+++|.+....+.+.+-|-+.+.+-++...--.+-...+...++-.|..++++.-.+...++..+.-..+.
T Consensus 670 ~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~ 749 (1200)
T KOG0964|consen 670 LKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKE 749 (1200)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHH
Confidence 34445555566677776666777777777777777777777777777777777777777777777777777766665555
Q ss_pred HHHHh
Q 000499 823 YAELE 827 (1460)
Q Consensus 823 ~~ele 827 (1460)
...+.
T Consensus 750 Le~i~ 754 (1200)
T KOG0964|consen 750 LEEIK 754 (1200)
T ss_pred HHHHH
Confidence 44443
No 242
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.90 E-value=4.9e+02 Score=33.86 Aligned_cols=137 Identities=12% Similarity=0.054 Sum_probs=77.2
Q ss_pred HHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHhhhhhhhHhHHHH
Q 000499 319 CLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECS--RMISALEDKLLHSEEDSKRI 396 (1460)
Q Consensus 319 ClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcL--E~IS~LE~ki~~aee~~~~l 396 (1460)
=+.+|+.++.+++.-.+.+-.+-+|+.+|-..-+.|.+-+.+|..=- +-.+ -.+.+++-+ .++.++
T Consensus 600 QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~-------~~~lp~l~~AErdFk-----~Elq~~ 667 (741)
T KOG4460|consen 600 QLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSF-------HSELPVLSDAERDFK-----KELQLI 667 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc-------cccCCcchhHHHHHH-----HHHHHh
Confidence 34556666666777777777888888888888888887777763200 0000 022222222 112344
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHH
Q 000499 397 NKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEK 469 (1460)
Q Consensus 397 n~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~ 469 (1460)
+.+..-+-+.++.++.+..+-+.++.......+.- +-.--+-.+++-|+-+..|..+|..-..+.+..+..
T Consensus 668 ~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~--~Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~VK~i~~~ 738 (741)
T KOG4460|consen 668 PDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKP--TYILSAYQRKCIQSILKELGEHIREMVKQVKDIRNH 738 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555555555444333433332222210 111126677788888888888888888888777653
No 243
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=60.84 E-value=2e+02 Score=37.41 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHhHh
Q 000499 311 ANIRQYQQCLDKLSNMEKNISRA 333 (1460)
Q Consensus 311 a~LlqykqClE~Is~LE~~~s~a 333 (1460)
||+.+|+.-..++-+.|.+++.-
T Consensus 349 AA~kAY~~yk~kl~~vEr~~~~~ 371 (652)
T COG2433 349 AAYKAYLAYKPKLEKVERKLPEL 371 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 66778888888887777777643
No 244
>PRK10869 recombination and repair protein; Provisional
Probab=60.38 E-value=4.8e+02 Score=33.67 Aligned_cols=64 Identities=22% Similarity=0.183 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHh
Q 000499 428 YQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKM 491 (1460)
Q Consensus 428 ~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl 491 (1460)
+++=+..|..|...+-.+=+++-....++......|.+.+.....|+.....+..++..+..++
T Consensus 301 ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~L 364 (553)
T PRK10869 301 LEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKL 364 (553)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666667776666777666667777777777777665555555555554444444333
No 245
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=59.54 E-value=72 Score=38.18 Aligned_cols=54 Identities=24% Similarity=0.362 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhh
Q 000499 777 LRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRY 830 (1460)
Q Consensus 777 lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~ 830 (1460)
++..+.++|+.+.--=--|+-|-+||.+|..||+.+...+..++..|..+...|
T Consensus 82 lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 82 LKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666655555555666667777777888887777777777666655555
No 246
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=59.07 E-value=2.5e+02 Score=33.95 Aligned_cols=117 Identities=22% Similarity=0.292 Sum_probs=75.0
Q ss_pred hHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHH----------HH
Q 000499 658 SVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVC----------QN 727 (1460)
Q Consensus 658 ~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc----------~s 727 (1460)
.|.++|+.|+.|+-.+..+..| |-+|+++-----.|++-|-.++..|||+. ..
T Consensus 1 iVdd~QN~N~EL~kQiEIcqEE-----------------NkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrd 63 (351)
T PF07058_consen 1 IVDDVQNQNQELMKQIEICQEE-----------------NKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRD 63 (351)
T ss_pred CchhhhhhcHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3789999999999888777755 55555555555567777777777777764 34
Q ss_pred HHHhhhhhhhhHHHHHhhhhHHHHH---HH--------hhhhh----hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 000499 728 LLAEKSTLVAEKNSLFSQLQDVNEN---LK--------KLSDE----NNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLD 792 (1460)
Q Consensus 728 L~~eKS~L~sEK~~LvSQLq~~~~~---l~--------~L~Ek----ns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~ 792 (1460)
+....+.|.-||-+|=-.|-.+.-+ .. +=..| .--||..-+ ++.|+.-||.|+-..|-+..+.-
T Consensus 64 Yqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~-lQgEmQ~LrDKLAiaERtAkaEa 142 (351)
T PF07058_consen 64 YQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRF-LQGEMQQLRDKLAIAERTAKAEA 142 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776666543221 11 00000 012222221 68899999999888887776653
No 247
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=58.57 E-value=1.2e+02 Score=39.29 Aligned_cols=135 Identities=19% Similarity=0.136 Sum_probs=101.6
Q ss_pred hhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHH
Q 000499 734 TLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIAR 813 (1460)
Q Consensus 734 ~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~ 813 (1460)
-|..-|+.|+.|...+++..+---||.-.|| .=++..|.|+..-|+-+|...--.++|.+.|=.|...|..+.
T Consensus 115 RLe~dkesL~LQvsvLteqVeaQgEKIrDLE-------~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLK 187 (861)
T KOG1899|consen 115 RLEMDKESLQLQVSVLTEQVEAQGEKIRDLE-------TCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELK 187 (861)
T ss_pred HHhcchhhheehHHHHHHHHHHhhhhHHHHH-------HHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhH
Confidence 3445566667777777666665555554444 457888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhhh
Q 000499 814 KGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISF 878 (1460)
Q Consensus 814 ~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is~ 878 (1460)
-.+-.+|++--+-++|.-..+.++|-+- .-+-.-+..|+-.|.--.|++...++-|..|++.
T Consensus 188 LkltalEkeq~e~E~K~R~se~l~qevn---~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~e 249 (861)
T KOG1899|consen 188 LKLTALEKEQNETEKKLRLSENLMQEVN---QSKVGEVVQERLQYETKLKSTKGEMAPLREQRSE 249 (861)
T ss_pred HHHHHHHHHhhhHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHhhcccccchhhhHHHHHhh
Confidence 9999999998888888877777765433 1122234456666777788888888888877654
No 248
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=58.43 E-value=3.3e+02 Score=33.47 Aligned_cols=44 Identities=23% Similarity=0.319 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000499 417 LTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGF 460 (1460)
Q Consensus 417 L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~ 460 (1460)
.......++..|.+....|..+..++.+-.+++.+.+.+|+..-
T Consensus 278 ~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg 321 (359)
T PF10498_consen 278 AQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERG 321 (359)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444455555555555555555555555555555554443
No 249
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=56.41 E-value=4.9e+02 Score=32.49 Aligned_cols=91 Identities=21% Similarity=0.307 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHH
Q 000499 234 KAEMEILTLKNALAKLEAEKEAGLLQYRQSLE-----------RLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEAL 302 (1460)
Q Consensus 234 kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~sle-----------k~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~l 302 (1460)
.-..|+...+++.+.|+---|..+-+|+.-+- ||..||.+++++ ..--.+|+-+||+.+
T Consensus 264 aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdl----------teLqQnEi~nLKqEl 333 (455)
T KOG3850|consen 264 AILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDL----------TELQQNEIANLKQEL 333 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHH
Confidence 45678888899999888888888887765443 566777777653 223457888899888
Q ss_pred HHHHHHHH-----HHH---HHHHHHHHHHHhHHHHHhHhH
Q 000499 303 ARLETERE-----ANI---RQYQQCLDKLSNMEKNISRAE 334 (1460)
Q Consensus 303 a~Lq~Eke-----a~L---lqykqClE~Is~LE~~~s~aq 334 (1460)
+-.++..+ .+. -...+|.-+||+||..+-+-|
T Consensus 334 asmeervaYQsyERaRdIqEalEscqtrisKlEl~qq~qq 373 (455)
T KOG3850|consen 334 ASMEERVAYQSYERARDIQEALESCQTRISKLELQQQQQQ 373 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87665421 111 145689999999998776444
No 250
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=56.35 E-value=4.9e+02 Score=32.51 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHh
Q 000499 446 EEEAQRLHSELDN 458 (1460)
Q Consensus 446 QEEv~RL~~Ei~~ 458 (1460)
+.+..+|.++.+.
T Consensus 354 ~~el~~L~Re~~~ 366 (498)
T TIGR03007 354 EAELTQLNRDYEV 366 (498)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 251
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=55.70 E-value=1.3e+02 Score=29.59 Aligned_cols=64 Identities=27% Similarity=0.327 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhH
Q 000499 396 INKVADKAESEVERLKQALGKLT-------EEKEALALQYQQCLEAISILEHKLAR----AEEEAQRLHSELDNG 459 (1460)
Q Consensus 396 ln~~~e~~e~ev~~Lk~~l~~L~-------eekeal~l~~qq~~~kI~~LE~els~----sQEEv~RL~~Ei~~~ 459 (1460)
+|+.++.++.+.+.+-+++...+ -...+-....+.+..+|..||..+.. =.+||.||+.+++..
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445555555555555433333 33333444455667788888877764 467888888887643
No 252
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=55.55 E-value=6.3e+02 Score=33.49 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 293 AEVQTLKEALARLETEREANIRQYQQ 318 (1460)
Q Consensus 293 ~E~~sLk~~la~Lq~Ekea~Llqykq 318 (1460)
..+..+...++..+++..++..+|.+
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~ 262 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADS 262 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 253
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=54.95 E-value=6.7e+02 Score=33.65 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=31.4
Q ss_pred HHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000499 317 QQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARI 361 (1460)
Q Consensus 317 kqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l 361 (1460)
.+=+..|..+++.+...++.|..+.+|..+|...-+.|.+-+..+
T Consensus 575 e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 575 EQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455666666667777888888888888888777777655544
No 254
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=54.48 E-value=3.8e+02 Score=30.57 Aligned_cols=123 Identities=28% Similarity=0.359 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHH-HH
Q 000499 615 DQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIME-KL 693 (1460)
Q Consensus 615 ~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~me-kL 693 (1460)
.....|+..+.....+...+....++|.+ |+..=.....+...|+++......+.+ .+++.|+ ..
T Consensus 47 ~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~-----------~~~~k~~qe~eI~~Le~e~~~~~~e~~---~~l~~~~~qf 112 (206)
T PF14988_consen 47 KQTSELQDQLLQKEKEQAKLQQELQALKE-----------FRRLKEQQEREIQTLEEELEKMRAEHA---EKLQEAESQF 112 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 34567777777777777777777777765 333333444456777777777766654 4456664 57
Q ss_pred HHHHHHHhhhhhhhhHhhh------hHHHH--------HHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHH
Q 000499 694 LEKNAVLENSLSDLNVELE------GVRDK--------VKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNE 751 (1460)
Q Consensus 694 lEkns~LE~SLSdan~ELe------gLReK--------~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~ 751 (1460)
+.+.+.||+-+++..+-+= .|..| ++.+-++|.++..+..-|..+=.-|+-+-+.+..
T Consensus 113 l~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~ 184 (206)
T PF14988_consen 113 LQEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEA 184 (206)
T ss_pred HHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999998877666432 22333 5567788888877777666444444443333333
No 255
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=54.42 E-value=6.2e+02 Score=33.10 Aligned_cols=79 Identities=16% Similarity=0.266 Sum_probs=36.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhH
Q 000499 486 SMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSL 564 (1460)
Q Consensus 486 ~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L 564 (1460)
.+.+.+..+.|.+.++..++...-...++-+.+....+.-+..--.+...+|.+.+.++.+.+...+.++++-+-...|
T Consensus 418 ~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el 496 (607)
T KOG0240|consen 418 ILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEEL 496 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444433333333333344444444444455555666666666665555555544444433333
No 256
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=54.32 E-value=75 Score=30.33 Aligned_cols=58 Identities=28% Similarity=0.318 Sum_probs=41.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhh
Q 000499 709 VELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNS 766 (1460)
Q Consensus 709 ~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~s 766 (1460)
++..+||.....+..=-.....+...|..||+..+++|........+|-.++..|...
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666667778888999999999999888877776555555443
No 257
>PRK10884 SH3 domain-containing protein; Provisional
Probab=53.60 E-value=1.7e+02 Score=33.34 Aligned_cols=29 Identities=24% Similarity=0.349 Sum_probs=21.8
Q ss_pred CChhhhhhhhHHHHHHHHHHHHHHHhHHH
Q 000499 226 PSESERMGKAEMEILTLKNALAKLEAEKE 254 (1460)
Q Consensus 226 ~sesER~~kAe~EI~~Lkk~i~~LqtEKE 254 (1460)
.|-.+|-.+.+.|+..|+..+..+..+-+
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44567778888888888888888776644
No 258
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=53.23 E-value=5.7e+02 Score=32.30 Aligned_cols=71 Identities=17% Similarity=0.297 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHH
Q 000499 399 VADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEK 469 (1460)
Q Consensus 399 ~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~ 469 (1460)
+++....++..+.+.|...+.....+..++.+....|..++..+..++.++..+...|..+...|+.++..
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 44556777777777777777777777777778888888888888888888888888888888888777764
No 259
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=52.92 E-value=2.6e+02 Score=29.21 Aligned_cols=63 Identities=16% Similarity=0.225 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Q 000499 714 VRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEG 776 (1460)
Q Consensus 714 LReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~ 776 (1460)
+..++..|+.+....+.....|+.+|+.|=+.++.+...-.....+...|+.+++|+-+.++.
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555566666666666666789999988888888888888888888888888888887777
No 260
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=52.70 E-value=4.1e+02 Score=30.43 Aligned_cols=68 Identities=25% Similarity=0.375 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHH
Q 000499 239 ILTLKNALAKLEAEKEAGLLQYRQSLE--------RLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLE 306 (1460)
Q Consensus 239 I~~Lkk~i~~LqtEKE~~~~qY~~sle--------k~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq 306 (1460)
+-.++..|..+..+++...-.-+..++ ....+..++..++.++..+..+......++...+..+..+.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~ 97 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELR 97 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777766666665 45555556666666555555555555555555555554433
No 261
>PF14992 TMCO5: TMCO5 family
Probab=52.06 E-value=3.5e+02 Score=32.39 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=13.2
Q ss_pred hhhhhHHHHHhHHHHhhHhhHHHHHHH
Q 000499 461 AKLKGAEEKCLLLERSNQTLHSELESM 487 (1460)
Q Consensus 461 ~kL~~lE~~~~~LE~~~q~L~sE~e~L 487 (1460)
.++..+.+.|..+|..+..+.++.+..
T Consensus 116 ~~lqql~~~~~~qE~ei~kve~d~~~v 142 (280)
T PF14992_consen 116 NKLQQLLESCASQEKEIAKVEDDYQQV 142 (280)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555554444433
No 262
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=52.02 E-value=1.1e+02 Score=35.21 Aligned_cols=82 Identities=30% Similarity=0.375 Sum_probs=60.0
Q ss_pred hhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 000499 703 SLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSK 782 (1460)
Q Consensus 703 SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k 782 (1460)
+++|+.-..+.+|+|...+ ..+|..|..|-.-|=+.++.+.++++.|...|+.||..+-.+-.+...|+.+..
T Consensus 129 ~~~d~ke~~ee~kekl~E~-------~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 129 EYMDLKEDYEELKEKLEEL-------QKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred hhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 4567776677777765543 456666777777777788888888888888888888888888888888888887
Q ss_pred HHHHHHHHh
Q 000499 783 SLEDSCLLL 791 (1460)
Q Consensus 783 ~lEes~~~l 791 (1460)
+|+.-..+.
T Consensus 202 ELe~~~El~ 210 (290)
T COG4026 202 ELEPGVELP 210 (290)
T ss_pred Hhcccccch
Confidence 777654443
No 263
>PRK10884 SH3 domain-containing protein; Provisional
Probab=51.57 E-value=1.6e+02 Score=33.41 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 000499 400 ADKAESEVERLKQALGK 416 (1460)
Q Consensus 400 ~e~~e~ev~~Lk~~l~~ 416 (1460)
+..++.++++|+.++..
T Consensus 95 lp~le~el~~l~~~l~~ 111 (206)
T PRK10884 95 VPDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 264
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=51.53 E-value=1.6e+02 Score=35.75 Aligned_cols=78 Identities=24% Similarity=0.403 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000499 349 IEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQY 428 (1460)
Q Consensus 349 ~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~ 428 (1460)
..|.+|-.++|++.+||+...-+++ .+-+..+.++..|.+.-.-+-.+.++++.+|
T Consensus 8 ~ri~~li~~la~~~~~~e~~~~~~~------------------------~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qy 63 (328)
T PF15369_consen 8 RRIANLIKELARVSEEKEVTEERLK------------------------AEQESFEKKIRQLEEQNELIIKEREDLQQQY 63 (328)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3567899999999999997643332 2222333344444444444667788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000499 429 QQCLEAISILEHKLARAEEEAQ 450 (1460)
Q Consensus 429 qq~~~kI~~LE~els~sQEEv~ 450 (1460)
..|-+=++--..=+|.+|+-+.
T Consensus 64 recqell~lyq~ylseqq~kl~ 85 (328)
T PF15369_consen 64 RECQELLSLYQKYLSEQQEKLT 85 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988888888887654
No 265
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=51.28 E-value=4.3e+02 Score=30.36 Aligned_cols=67 Identities=21% Similarity=0.224 Sum_probs=46.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHH
Q 000499 407 VERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLL 473 (1460)
Q Consensus 407 v~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~L 473 (1460)
-...++++..+..+++.+..+|.++...+..|+....+.+..+.....+|..+...+.+++.-...+
T Consensus 37 ~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 37 AQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777777777777777777777777777777777777777666666666554433
No 266
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=50.80 E-value=2.5e+02 Score=31.48 Aligned_cols=91 Identities=19% Similarity=0.258 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 288 ASIAEAEVQTLKEALARLETEREANIR---------QYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDL 358 (1460)
Q Consensus 288 a~~ae~E~~sLk~~la~Lq~Ekea~Ll---------qykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel 358 (1460)
|.+...+++.++..+..+-.+..-++. -+.+|...|-.|+.+|+..+.+...-+.|. .-.++++|+.+|
T Consensus 70 a~k~~~~a~~~Kse~~~~r~~L~l~FI~sf~~Y~~leL~s~~~ei~~L~~kI~~L~~~in~~~k~~--~n~~i~slk~EL 147 (181)
T PF04645_consen 70 AFKSNAEARNAKSELEMERSNLELSFIDSFNQYKNLELKSIKKEIEILRLKISSLQKEINKNKKKD--LNEEIESLKSEL 147 (181)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--hhhhHHHHHHHH
Confidence 344444555555555444444433332 356888999999999999999888766654 234577888888
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHH
Q 000499 359 ARIEAEKEAAVVK-YEECSRMIS 380 (1460)
Q Consensus 359 ~~l~~EKEa~~lq-yqQcLE~IS 380 (1460)
..+.-+++.-... |-+|..+++
T Consensus 148 ~d~iKe~e~~emeLyyecMkkL~ 170 (181)
T PF04645_consen 148 NDLIKEREIREMELYYECMKKLA 170 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887666655444 889987664
No 267
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=50.35 E-value=3.1e+02 Score=30.20 Aligned_cols=83 Identities=23% Similarity=0.235 Sum_probs=52.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000499 232 MGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREA 311 (1460)
Q Consensus 232 ~~kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea 311 (1460)
......|+..|+.....|.++++.-+-...++-.++-.+|...- .+.+.|...+++|+++-..
T Consensus 45 n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~-----------------~e~k~L~~~v~~Le~e~r~ 107 (158)
T PF09744_consen 45 NQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWR-----------------QERKDLQSQVEQLEEENRQ 107 (158)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
Confidence 34667788899999999988888777777666667766665543 3455566666666665544
Q ss_pred HHHHHHHHHHHHHhHHHHHh
Q 000499 312 NIRQYQQCLDKLSNMEKNIS 331 (1460)
Q Consensus 312 ~LlqykqClE~Is~LE~~~s 331 (1460)
-....+.+-+.++.|+..-.
T Consensus 108 L~~~~~~~~~q~~rlee~e~ 127 (158)
T PF09744_consen 108 LELKLKNLSDQSSRLEEREA 127 (158)
T ss_pred HHHHhhhhhhhccccchhHH
Confidence 44444445555554444333
No 268
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=50.19 E-value=1.5e+02 Score=32.03 Aligned_cols=95 Identities=25% Similarity=0.246 Sum_probs=52.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000499 710 ELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCL 789 (1460)
Q Consensus 710 ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~ 789 (1460)
++..+-..+..|.+-+..|+.+.+.|.+|-+.|.+.+-. .++...+..+..+++.++..+.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~-------------------~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN-------------------EELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555655555555555555554422 2333444444445555555555
Q ss_pred HhhhhhhhhH-HhHHHHHHhHHHHHHHHHHHHHHH
Q 000499 790 LLDNEKSCLI-TERVNLVSQLDIARKGLKDLEKSY 823 (1460)
Q Consensus 790 ~l~~e~s~l~-~Ek~~L~sQl~~~~~~l~~lek~~ 823 (1460)
.++....... .++..+..........++.+++-|
T Consensus 134 ~l~~~~~~vs~ee~~~~~~~~~~~~k~w~kRKri~ 168 (169)
T PF07106_consen 134 KLRSGSKPVSPEEKEKLEKEYKKWRKEWKKRKRIC 168 (169)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5554222222 677777777777777777776644
No 269
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=50.12 E-value=1.1e+02 Score=37.21 Aligned_cols=142 Identities=18% Similarity=0.219 Sum_probs=96.3
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhHhhhHHHHH------------------HHHhhhhHHHHHHH
Q 000499 1307 IHELNMKLEAELGKLLEELEGTRYREESLYHELEKERKHAGLWETQAT------------------ELFSELQISSVCEV 1368 (1460)
Q Consensus 1307 l~e~N~~Le~e~~~L~~E~~~~k~rEe~L~~elq~~~~e~el~E~ea~------------------~l~~dlq~ssv~e~ 1368 (1460)
|+.+|+.....+...+.++.+.|.+=..+..-||....|..-.+.||. +||.+.-...--..
T Consensus 3 Lk~~nR~~~~~~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~~~~~~ 82 (355)
T PF09766_consen 3 LKQLNRAAQFRIKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKCLDFKSKYEDIELVPVEEFYAKAPEEISDPE 82 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCCCcCccHHHHHHhChhhccccc
Confidence 678899999999999999999999888888888888888888888877 33332222111011
Q ss_pred HHhhhhHHHHHHHhhhhhhc-cchhhhHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHhhhHhHHhhh-hhcccccCCchh
Q 000499 1369 LRNEKAHELSRACENLEDRS-NSNDIEINQLKEKANALECENGGLKAHLAASIPAVISLKDSIRSLE-NHTLLHKADNDE 1446 (1460)
Q Consensus 1369 L~eekv~El~~~ce~Le~~~-~~k~~ei~~Lkerv~~le~En~~Lk~~Lsay~~~i~sL~d~i~~LE-~~tl~~~~~~~e 1446 (1460)
+-...-+++|-+.=..|-.. -........|+.+-..+..+|...++.|++..|.+.+|.+...-+- .=.++++...+.
T Consensus 83 ~~~~~~H~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~~~~~~~~~~ 162 (355)
T PF09766_consen 83 LTEDDEHQLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLGLPHTKKRKQ 162 (355)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCccchhhh
Confidence 11223344333322222111 1233577888889999999999999999999999999988888773 345666665544
Q ss_pred hh
Q 000499 1447 VK 1448 (1460)
Q Consensus 1447 ~k 1448 (1460)
..
T Consensus 163 ~~ 164 (355)
T PF09766_consen 163 HE 164 (355)
T ss_pred HH
Confidence 44
No 270
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=49.95 E-value=3.1e+02 Score=31.82 Aligned_cols=72 Identities=18% Similarity=0.300 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000499 293 AEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAE 364 (1460)
Q Consensus 293 ~E~~sLk~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~E 364 (1460)
.=+.-++.+...|..|+.+=.-.+.+=-..|..||..|+++..+-....+-+.+...++..||.++-.+..+
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777888888888788888889999999999999999998888888888998898888877543
No 271
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=49.51 E-value=9.3e+02 Score=33.70 Aligned_cols=344 Identities=14% Similarity=0.166 Sum_probs=142.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhh-hhHHHHHHhHHHHHHHHHHHHHHHHHH---
Q 000499 619 ALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENS-KLKEVYERDRCEKVALLEKLEIMEKLL--- 694 (1460)
Q Consensus 619 aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~-~LkE~~s~~~~EK~~L~~kLq~mekLl--- 694 (1460)
.|+..+.....++..|..+...+. -.-+..+..+.+++..-. .+.-.-..+.+.......+|..|....
T Consensus 536 ~l~~~~~~s~~d~s~l~~kld~~~-------~~~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~s~~~~~l~~~~~~~~s~ 608 (1041)
T KOG0243|consen 536 KLRRSLEESQDDLSSLFEKLDRKD-------RLDDDNQEVIDDFQSQLSENLSTLHGLVASSSSQQISQLTTMLAQMESF 608 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhh-------ccccccHHHHHHHhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHH
Confidence 344445445555555555443332 222334555566655433 233334445555555556666654433
Q ss_pred --HHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhH-HHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhH
Q 000499 695 --EKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEK-NSLFSQLQDVNENLKKLSDENNFLVNSLFDAN 771 (1460)
Q Consensus 695 --Ekns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK-~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n 771 (1460)
-++..+|...+.....-+-+-+-...++..|..++.....-...- +.-.+.+..+...++....-...|...++..-
T Consensus 609 ~s~~~~~~e~~~t~~~~~r~~~~~~~e~~q~~~~~~k~~~~s~l~~i~s~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l 688 (1041)
T KOG0243|consen 609 LSAKSKATEIMKTKISKDRDILSEVLESLQQLQEVLKKDSESCLEVINSSITSSINELESMLETIANTADDLLQNISSRL 688 (1041)
T ss_pred hhhhccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223334444443333323333334445555555544443333332 22344455555544444433333333333322
Q ss_pred H---HHHHHHHH-----HHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHH-HHHHHHHHHhhhhcchHHHHHHHHH
Q 000499 772 A---EVEGLRAK-----SKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLK-DLEKSYAELEGRYLGLEEEKESTLQ 842 (1460)
Q Consensus 772 ~---ElE~lr~K-----~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~-~lek~~~ele~k~~~lq~Ek~~~~~ 842 (1460)
. +.-.+-+. .-..-.+++.+..-.+.+-..+.+...++.....+.. .+......-..++.....+.+..+.
T Consensus 689 ~~q~~~~~l~~~qe~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 768 (1041)
T KOG0243|consen 689 SNQQEILSLFANQELQELVLSQDSAQELSELTSTFFQTLDNQAEKLTNLFSEANISLSQKLSSFQKKFESIAEDEKQLVE 768 (1041)
T ss_pred hhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHhhhHHhhHHHHHHHHH
Confidence 2 11111111 1112223333333333333222222222221111111 1122223333333334445567888
Q ss_pred HHHHHHHhHHHHHHHhhh-hh----hchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHH--HHhhHHHHHHHHHHHHHHH
Q 000499 843 KVEELQFSLDAEKQQHAS-FV----QLSETRLAGMESQISFLQEEGLCRKKAYEEELDK--ALDAQIEIFITQKYIQDLK 915 (1460)
Q Consensus 843 ~veel~~sL~~e~q~h~~-~~----k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk--~~~AqieifiLq~~l~Dl~ 915 (1460)
++.++..+...+.++..- ++ .....+...+...++.-+.-....+..-+.--.. +....+ .-+.....+.+.
T Consensus 769 ~~~e~~~~~~q~~~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~k~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~ 847 (1041)
T KOG0243|consen 769 DIKELLSSHDQRNNELLDIALQTLRSAVNSRESNLTESVSVMQNLSDDLKTIWQTLGKQNENHHNEV-LSAIEEKQQAMK 847 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhHHHhhhhHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHH
Confidence 888887777666554321 11 1111222223333333333222233222222222 111122 223345556666
Q ss_pred hhhhhhHHHHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 000499 916 EKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSL----VDQIKVLRVQLYQLLEI 973 (1460)
Q Consensus 916 ~kn~~ll~EcQk~~eas~~se~lIseLe~E~~~~q~e~~~L----~~~~~~Lr~gi~qv~k~ 973 (1460)
..-..++..|--.+..++-+..-|..+ +......++++ .+++.+++....+.+..
T Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~lk~~---~~~~~~~~~~l~~~~~~~~~k~~~e~~s~~~~ 906 (1041)
T KOG0243|consen 848 SVLKELLENAESQVDECKEAIESLKSL---ESNHVATLDSLVRGVSEQNKKLQDEFLSLLNS 906 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccchHHHHHHhhhhhhhHHhhHHHHHHHhH
Confidence 666666666666666666555444444 22222222222 33666666655555444
No 272
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=48.81 E-value=2.7e+02 Score=31.41 Aligned_cols=86 Identities=21% Similarity=0.259 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 000499 435 ISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQE 514 (1460)
Q Consensus 435 I~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~ 514 (1460)
+-.+-.......++.+++...|.....-...+|.....||..+..|+.+...+..+....+.++...+..+..++..+.+
T Consensus 98 LL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 98 LLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555554444445555556666666666667776677766666666666666677777766666
Q ss_pred HHHHHH
Q 000499 515 ERLRFV 520 (1460)
Q Consensus 515 E~~k~~ 520 (1460)
-..+|-
T Consensus 178 ~e~~F~ 183 (190)
T PF05266_consen 178 AELEFQ 183 (190)
T ss_pred HHHHHH
Confidence 555443
No 273
>PF13514 AAA_27: AAA domain
Probab=48.53 E-value=9.6e+02 Score=33.56 Aligned_cols=95 Identities=18% Similarity=0.123 Sum_probs=44.7
Q ss_pred HHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh--hhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhh
Q 000499 753 LKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKS--CLITERVNLVSQLDIARKGLKDLEKSYAELEGRY 830 (1460)
Q Consensus 753 l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s--~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~ 830 (1460)
+.........++..+..+..++..+..++..+-..+...-.... ...........+..........+......+...+
T Consensus 738 l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~ 817 (1111)
T PF13514_consen 738 LREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEEL 817 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666677777777776666555544222111 2223333333333333344444444444444444
Q ss_pred cchHHHHHHHHHHHHHH
Q 000499 831 LGLEEEKESTLQKVEEL 847 (1460)
Q Consensus 831 ~~lq~Ek~~~~~~veel 847 (1460)
..+..+....-.++..+
T Consensus 818 ~~~~~~l~~~~~~l~~L 834 (1111)
T PF13514_consen 818 EQAEEELEELEAELAEL 834 (1111)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444443333333333
No 274
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=47.88 E-value=34 Score=41.19 Aligned_cols=129 Identities=18% Similarity=0.234 Sum_probs=12.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Q 000499 332 RAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLK 411 (1460)
Q Consensus 332 ~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk 411 (1460)
-+..|..-+.+|....|.-+..|...++.+. -+|+.|+..+..+...+......+..+...+..++
T Consensus 25 ~s~GDLs~I~eRLsaLEssv~sL~~SVs~ls--------------s~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq 90 (326)
T PF04582_consen 25 TSPGDLSPIRERLSALESSVASLSDSVSSLS--------------STISDLSSDLQDLASSLADMTSELNSLSSTVTSLQ 90 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555443 24455555555444444444444445555555555
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHH
Q 000499 412 QALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLE 474 (1460)
Q Consensus 412 ~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE 474 (1460)
..|..+......+...+......|+.|...+.--.-++.-|+..+-.....+.+++.+...||
T Consensus 91 ~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 91 SSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
Confidence 555444444444444444333333333333333333333333333333333333333333333
No 275
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=47.63 E-value=1e+02 Score=29.07 Aligned_cols=43 Identities=28% Similarity=0.278 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHH
Q 000499 445 AEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESM 487 (1460)
Q Consensus 445 sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L 487 (1460)
.++++++.+......-.+|+++|.++..|+..+..|+.+++.+
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777777777777888888888777776666666666543
No 276
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=47.17 E-value=4.7e+02 Score=29.53 Aligned_cols=127 Identities=24% Similarity=0.277 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHH
Q 000499 315 QYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSK 394 (1460)
Q Consensus 315 qykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~ 394 (1460)
+++-=.++|-.||-.-++|+...+.+..++.. .+.-+.+...+.+.. ...+.
T Consensus 5 ALK~LQeKIrrLELER~qAe~nl~~LS~et~~-------yk~vl~~~~~~~~~~---------------------~~e~~ 56 (178)
T PF14073_consen 5 ALKNLQEKIRRLELERSQAEDNLKQLSRETSH-------YKKVLQSEQNERERA---------------------HQELS 56 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------hHHHHHHHhhhhhcc---------------------cchhh
Confidence 45555677888888888888888877665522 111111111111111 00111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHH
Q 000499 395 RINKVADKAESEVERLKQALGKLTEEKEALALQYQQCL-EAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLL 473 (1460)
Q Consensus 395 ~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~-~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~L 473 (1460)
..|. .+...+......|.-|+...+-|.-.+.... ++-..++...+-..+ -.-=..++.....||.-+|..|..|
T Consensus 57 ~q~~---dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e-~~~~~~~~~~klekLe~LE~E~~rL 132 (178)
T PF14073_consen 57 KQNQ---DLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRE-RQQDQSELQAKLEKLEKLEKEYLRL 132 (178)
T ss_pred hccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-hccchhhHHHHHHHHHHHHHHHHHH
Confidence 1111 2344444455555555555555544444332 333333333221111 0112466788888999999998888
No 277
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=47.05 E-value=4.9e+02 Score=29.76 Aligned_cols=11 Identities=9% Similarity=0.244 Sum_probs=5.3
Q ss_pred CccchhhhHHH
Q 000499 651 NPENFGLSVKE 661 (1460)
Q Consensus 651 ~~e~~~~~Vke 661 (1460)
.+-|+++.|.+
T Consensus 224 ~~~gs~s~i~d 234 (302)
T PF10186_consen 224 TPSGSRSTIID 234 (302)
T ss_pred ccCccccchhh
Confidence 34445555554
No 278
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=46.36 E-value=1e+02 Score=35.60 Aligned_cols=8 Identities=50% Similarity=0.559 Sum_probs=3.3
Q ss_pred hhhhHHHH
Q 000499 666 NSKLKEVY 673 (1460)
Q Consensus 666 n~~LkE~~ 673 (1460)
...+++..
T Consensus 130 ~~d~ke~~ 137 (290)
T COG4026 130 YMDLKEDY 137 (290)
T ss_pred hhHHHHHH
Confidence 33444433
No 279
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=45.38 E-value=3.1e+02 Score=34.18 Aligned_cols=46 Identities=35% Similarity=0.524 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH
Q 000499 501 KQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQN 549 (1460)
Q Consensus 501 K~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~ 549 (1460)
-+.++.-+..++|+|+-|...-|..++++..+| |+|+-.|..++.+
T Consensus 242 ~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elH---q~Ei~~LKqeLa~ 287 (395)
T PF10267_consen 242 YQREYQFILEALQEERYRYERLEEQLNDLTELH---QNEIYNLKQELAS 287 (395)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 456777888999999888888889999988888 4554444444333
No 280
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=44.79 E-value=3.5e+02 Score=28.82 Aligned_cols=76 Identities=13% Similarity=0.230 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHH
Q 000499 396 INKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLE 474 (1460)
Q Consensus 396 ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE 474 (1460)
+..+++.+=..+..-|++ |..-.+.+-..++++.+.......++...+.++.++..+++..+.....+|.+...+|
T Consensus 48 v~kql~~vs~~l~~tKkh---LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 48 VSKQLEQVSESLSSTKKH---LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444455555555 5667777777888888888888888888999999999988888888888877755543
No 281
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=44.79 E-value=3.7e+02 Score=32.28 Aligned_cols=133 Identities=12% Similarity=0.105 Sum_probs=90.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhH--HhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHH
Q 000499 768 FDANAEVEGLRAKSKSLEDSCLLLDNEKSCLI--TERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVE 845 (1460)
Q Consensus 768 Sd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~--~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~ve 845 (1460)
.-++.+++.++.++...+..+..+++.|..+. ..-.....++..++.++-.++.+++++...+.+-.-....+-.++.
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~ 252 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIK 252 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHH
Confidence 34455666667777777777777777766655 2344567788888888888889998888888877777788888888
Q ss_pred HHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHHHhhHHH
Q 000499 846 ELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIE 903 (1460)
Q Consensus 846 el~~sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~~~Aqie 903 (1460)
.++.++..+..+-..... ..++...-+...|+-+...-+..|+-=+.+...|.++
T Consensus 253 ~l~~~i~~e~~~i~~~~~---~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~ 307 (362)
T TIGR01010 253 SLRKQIDEQRNQLSGGLG---DSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVE 307 (362)
T ss_pred HHHHHHHHHHHHhhcCCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888776654321 2344444455566666666666666555555555544
No 282
>PF15294 Leu_zip: Leucine zipper
Probab=44.73 E-value=6.3e+02 Score=30.34 Aligned_cols=74 Identities=24% Similarity=0.351 Sum_probs=51.9
Q ss_pred HHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHH---------hhhhhhhhhhhhh
Q 000499 697 NAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLK---------KLSDENNFLVNSL 767 (1460)
Q Consensus 697 ns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~---------~L~Ekns~LE~sl 767 (1460)
-.+|-+.+..++.|-+.||.+++.+|.-|.....||+.+. .+|..+..-.+ .=....+.||+.+
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~-------~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~ 199 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLE-------AQLKELQDEQGDQKGKKDLSFKAQDLSDLENKM 199 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhccccccccccchhhHHHHH
Confidence 4568899999999999999999999999998877776665 44444443111 2233445677777
Q ss_pred hhhHHHHHHH
Q 000499 768 FDANAEVEGL 777 (1460)
Q Consensus 768 Sd~n~ElE~l 777 (1460)
..++.+++..
T Consensus 200 a~lK~e~ek~ 209 (278)
T PF15294_consen 200 AALKSELEKA 209 (278)
T ss_pred HHHHHHHHHH
Confidence 7777665544
No 283
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=44.50 E-value=7.9e+02 Score=31.41 Aligned_cols=106 Identities=22% Similarity=0.256 Sum_probs=54.2
Q ss_pred HHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH-HHHHHHhhhhhhhhHH-----------hHHHHHHhH
Q 000499 742 LFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSL-EDSCLLLDNEKSCLIT-----------ERVNLVSQL 809 (1460)
Q Consensus 742 LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~l-Ees~~~l~~e~s~l~~-----------Ek~~L~sQl 809 (1460)
+|-|.--+.++.-+|..++...-.=+.|++.--. +.=++.. =-|..++-.+-|.|.. |-..|..||
T Consensus 342 ~lEqYadLqEk~~~Ll~~Hr~i~egI~dVKkaAa--kAg~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QL 419 (488)
T PF06548_consen 342 MLEQYADLQEKHNDLLARHRRIMEGIEDVKKAAA--KAGVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQL 419 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4444444444444444444443333444433221 1122222 2355666666666664 334566666
Q ss_pred HHHHH----------HHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHH
Q 000499 810 DIARK----------GLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQF 849 (1460)
Q Consensus 810 ~~~~~----------~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~ 849 (1460)
.-+.+ +|+.-+.--+--++++..++.|.+++..|++.|.-
T Consensus 420 rDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~ 469 (488)
T PF06548_consen 420 RDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKR 469 (488)
T ss_pred HhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433 23333444455667777777777777777777643
No 284
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=44.14 E-value=5.4e+02 Score=29.37 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000499 435 ISILEHKLARAEEEAQRLHSE 455 (1460)
Q Consensus 435 I~~LE~els~sQEEv~RL~~E 455 (1460)
++.|+..+.+-..++..|+.+
T Consensus 49 ~~~Lq~qLlq~~k~~~~l~~e 69 (206)
T PF14988_consen 49 TSELQDQLLQKEKEQAKLQQE 69 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333
No 285
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=43.39 E-value=5.5e+02 Score=29.32 Aligned_cols=50 Identities=26% Similarity=0.369 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000499 311 ANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAE 364 (1460)
Q Consensus 311 a~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~E 364 (1460)
+.+-.|.+.+.-|. .+......+..+...+..|=.++..++.++..+...
T Consensus 18 ~~i~~l~~al~~L~----~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~ 67 (240)
T PF12795_consen 18 ALIQDLQQALSFLD----EIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQ 67 (240)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc
Confidence 33445666655554 445566677778888888888899999888888554
No 286
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=43.32 E-value=35 Score=31.26 Aligned_cols=40 Identities=35% Similarity=0.372 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHhhhHhH
Q 000499 1391 NDIEINQLKEKANALECENGGLKAHLAASIPAVISLKDSI 1430 (1460)
Q Consensus 1391 k~~ei~~Lkerv~~le~En~~Lk~~Lsay~~~i~sL~d~i 1430 (1460)
+..++++|..+|..|+.+|..|+..+..+...+.+|...+
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5668999999999999999999998888888777776553
No 287
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=43.16 E-value=1.9e+02 Score=29.36 Aligned_cols=102 Identities=19% Similarity=0.216 Sum_probs=62.9
Q ss_pred HhHhHHHHHHhHhhhhhhhhhhhhHHHHhhhhHHhhhhhhhhhhhHHHHHhhhccchhhhhhhHHHHHHHHHHHHHhHhh
Q 000499 1101 LSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEKHSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSENLDK 1180 (1460)
Q Consensus 1101 l~~l~~s~~~lq~e~~~~~~e~~sL~k~~~~l~e~~~~lEden~~~l~E~i~~~~ls~~~~~~~~Ek~~~l~~L~e~l~~ 1180 (1460)
+..+...|+.+|.++..+......|.....+..-....++.- +.=..+|+.++. +.-.. .
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l-----------~~d~~vyk~VG~--vlv~~-------~ 64 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERL-----------PDDTPVYKSVGN--LLVKT-------D 64 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCcchhHHHhch--hhhee-------c
Confidence 445667788888888888888777777776655544444432 222456766665 11111 1
Q ss_pred hhcchhhHHHHHHHhhhhhhHHHHhhHHHHHHHHhhHHHHHh
Q 000499 1181 LGCINNELEEKVRLKDGKLEDVQMQNSLLKQSLEKSENELVA 1222 (1460)
Q Consensus 1181 L~~~~~eL~~~v~~l~~kle~~e~en~~Lk~~le~~~~eL~~ 1222 (1460)
...+..+|..+++.+..+...++..-.++...+..+...|.+
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233556666777777777777777777777766666666543
No 288
>PF13166 AAA_13: AAA domain
Probab=43.10 E-value=8.9e+02 Score=31.64 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000499 425 ALQYQQCLEAISILEHKLARAEEEAQRLHSELDNG 459 (1460)
Q Consensus 425 ~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~ 459 (1460)
.........+|..++..+.....=+.+++.++...
T Consensus 437 ~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 437 KEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33333444445555555554555555555554443
No 289
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=42.90 E-value=5.9e+02 Score=29.50 Aligned_cols=112 Identities=24% Similarity=0.321 Sum_probs=52.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000499 232 MGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREA 311 (1460)
Q Consensus 232 ~~kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea 311 (1460)
-..++.+...++.+++.+-+.+ ..+|.++..++.++..+..+|..|=.. =.+.|+
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~--------------k~~e~~~~~~~~~~~k~e~~A~~Al~~---g~E~LA-------- 87 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQ--------------KQLERKLEEAQARAEKLEEKAELALQA---GNEDLA-------- 87 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHH--------
Confidence 3455556666666665555544 444555555555554444443322111 012222
Q ss_pred HHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000499 312 NIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYE 373 (1460)
Q Consensus 312 ~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyq 373 (1460)
.+.++++.+|++....-+.......+.+.+.+..+..|...++.+...++....+++
T Consensus 88 -----r~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 88 -----REALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344444444444444444444444555555555555555555555555544433
No 290
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=42.67 E-value=2.8e+02 Score=32.05 Aligned_cols=50 Identities=22% Similarity=0.291 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 400 ADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEA 449 (1460)
Q Consensus 400 ~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv 449 (1460)
++.++.++++..+++...+++.+++.-+++....-.-.|=.+++..|+++
T Consensus 160 ~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 160 LEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 33444444444445445555555555444444433333333444444433
No 291
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=42.32 E-value=6.6e+02 Score=29.88 Aligned_cols=71 Identities=23% Similarity=0.199 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhH-------HHHHHHHHHhhhhhH
Q 000499 424 LALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLH-------SELESMVQKMGSQSQ 496 (1460)
Q Consensus 424 l~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~-------sE~e~L~ekl~~~~q 496 (1460)
...++-|.-..++.|+..+++..+.-..| ...++.||..+..||+..-.-. .-+..--++++++.-
T Consensus 82 ~e~q~~q~y~q~s~Leddlsqt~aikeql-------~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLES 154 (333)
T KOG1853|consen 82 QEDQRVQFYQQESQLEDDLSQTHAIKEQL-------RKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLES 154 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44556677778889999999887765544 4456677777777776654433 223333334445555
Q ss_pred HHHHH
Q 000499 497 ELTEK 501 (1460)
Q Consensus 497 eL~eK 501 (1460)
+|-+|
T Consensus 155 ELdEk 159 (333)
T KOG1853|consen 155 ELDEK 159 (333)
T ss_pred HhhHH
Confidence 55444
No 292
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=42.24 E-value=8.5e+02 Score=31.14 Aligned_cols=105 Identities=17% Similarity=0.127 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHhhhhhHHH--HHhHHHHhh
Q 000499 404 ESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHK----LARAEEEAQRLHSELDNGFAKLKGAEE--KCLLLERSN 477 (1460)
Q Consensus 404 e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~e----ls~sQEEv~RL~~Ei~~~~~kL~~lE~--~~~~LE~~~ 477 (1460)
..++.+++-+..--.++.+.++.+|-++.-.|.+||-. -++.++++.++..++..-.....-++. .|...|
T Consensus 308 ~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e--- 384 (554)
T KOG4677|consen 308 RKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLTLFYECFYHE--- 384 (554)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHHH---
Confidence 34444444444444555566666666665555555533 356778888888887665555444433 333332
Q ss_pred HhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 000499 478 QTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQ 513 (1460)
Q Consensus 478 q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq 513 (1460)
.+.+-+.+..-.-...-.+.+|+.||.+|-.-+.
T Consensus 385 --~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~ 418 (554)
T KOG4677|consen 385 --TEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLK 418 (554)
T ss_pred --HHHhhhhhhhccchhhccCcchHHHHHHHHHHHH
Confidence 2222222222221222245667777777665554
No 293
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.00 E-value=8.2e+02 Score=30.90 Aligned_cols=87 Identities=25% Similarity=0.304 Sum_probs=58.2
Q ss_pred hHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHH-HHHhhhhhh
Q 000499 658 SVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQN-LLAEKSTLV 736 (1460)
Q Consensus 658 ~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~s-L~~eKS~L~ 736 (1460)
--.+|-.+...|++-..+...=+..|-.+|+.- .+.-+.++.||+.+.+|++.+... +=.=+|.. ++.-.-.+.
T Consensus 435 v~e~l~~ei~~L~eqle~e~~~~~~le~ql~~~---ve~c~~~~aS~~slk~e~erl~qq--~eqi~~~~~~Katvp~l~ 509 (542)
T KOG0993|consen 435 VQEDLVKEIQSLQEQLEKERQSEQELEWQLDDD---VEQCSNCDASFASLKVEPERLHQQ--CEQIFCMNCLKATVPSLP 509 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccHHHHHHH--HHHHHHHhHHHhhccccc
Confidence 445666777888888888877777777777651 355677889999999999998622 00001211 555566677
Q ss_pred hhHHHHHhhhhHH
Q 000499 737 AEKNSLFSQLQDV 749 (1460)
Q Consensus 737 sEK~~LvSQLq~~ 749 (1460)
+|+-+=|-.|+..
T Consensus 510 ~e~~akv~rlq~e 522 (542)
T KOG0993|consen 510 NERPAKVCRLQHE 522 (542)
T ss_pred ccchHHHHHHHHH
Confidence 7777766666653
No 294
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=41.89 E-value=81 Score=40.36 Aligned_cols=54 Identities=33% Similarity=0.335 Sum_probs=45.1
Q ss_pred hhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 000499 732 KSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLE 785 (1460)
Q Consensus 732 KS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lE 785 (1460)
.-.|..|+.+|--.|+.+.+--.+|.+++..||..|-.+++|.+..|.|.++-|
T Consensus 331 VDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e 384 (832)
T KOG2077|consen 331 VDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDE 384 (832)
T ss_pred HHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 334567788888888888888889999999999999999999999999965544
No 295
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=39.92 E-value=2.4e+02 Score=28.32 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCC
Q 000499 592 LQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSL 650 (1460)
Q Consensus 592 LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~ 650 (1460)
|+.|+-++......+..-+.--+-+--++++.+.++.-++.+-..+|.+.+..+.++..
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~ 59 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDN 59 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 35566666655555555555555666678888888888888888888888886655544
No 296
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=39.82 E-value=4.4e+02 Score=28.02 Aligned_cols=66 Identities=15% Similarity=0.257 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 000499 315 QYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALED 384 (1460)
Q Consensus 315 qykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ 384 (1460)
.++.++-..+..-..++.|++.+..+.+++..+...+..=+.++..|.. ..++|+++++.++.++.
T Consensus 66 ~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~----~s~~~~~mi~iL~~Ie~ 131 (142)
T PF04048_consen 66 GFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKELWQ----RSQEYKEMIEILDQIEE 131 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 5788889999999999999999999999999999999998888888864 33568889888877663
No 297
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=39.69 E-value=4.1e+02 Score=26.78 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHH
Q 000499 374 ECSRMISALEDKLLHSEEDSKRINKVADKAESEVE 408 (1460)
Q Consensus 374 QcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~ 408 (1460)
.-+..|+.++..|..++..+..|.+-..++|.+++
T Consensus 63 ~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 63 PYLQQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35678888888888888888888777666666654
No 298
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=39.19 E-value=4.8e+02 Score=27.34 Aligned_cols=42 Identities=14% Similarity=0.295 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 338 VELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALE 383 (1460)
Q Consensus 338 k~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE 383 (1460)
..+..+......++..|.+.+..++.... .|+.|++.+..|.
T Consensus 9 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~----e~~~~~e~l~~l~ 50 (140)
T PRK03947 9 EELAAQLQALQAQIEALQQQLEELQASIN----ELDTAKETLEELK 50 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhc
Confidence 33334444444444444444444432222 2455666665555
No 299
>PRK11519 tyrosine kinase; Provisional
Probab=38.84 E-value=7e+02 Score=33.18 Aligned_cols=77 Identities=14% Similarity=0.133 Sum_probs=47.8
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh--HHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcc
Q 000499 756 LSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCL--ITERVNLVSQLDIARKGLKDLEKSYAELEGRYLG 832 (1460)
Q Consensus 756 L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l--~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~ 832 (1460)
+..|+..-...+.-++..+..++.++...|..++.++.++..+ ..+...+..++..++.++..++.+..++..+|..
T Consensus 258 ~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~ 336 (719)
T PRK11519 258 IERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTK 336 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445555556666667777777777777777777777766543 3455555566666666666665555555555544
No 300
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=38.51 E-value=42 Score=36.99 Aligned_cols=46 Identities=26% Similarity=0.486 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHH
Q 000499 589 IKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKH 638 (1460)
Q Consensus 589 Ik~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~ 638 (1460)
+.++..-...--|.+.-||.|+ +||+.|..+..+||+|+.+|....
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566667777888877 788888888888888888887766
No 301
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=38.17 E-value=1.8e+02 Score=35.07 Aligned_cols=80 Identities=28% Similarity=0.439 Sum_probs=58.8
Q ss_pred HHHhhhchHhHHHHHHHHHHHhccCcccccccH------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 000499 554 LKDMGTRNQSLQEEVEKVKEENKGLNELNLSSA------------------------ESIKNLQDEILSLRETIGKLEAE 609 (1460)
Q Consensus 554 L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~------------------------~sIk~LQdEi~~LkE~~~kLe~E 609 (1460)
+.|+.|.|+.|...|.--.|||+.|...|-.-. -.|++-|..+..|.|...-|+.|
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRE 81 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERE 81 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777776655443222 27888899999999999999999
Q ss_pred HHH----------------------------hhhhHHHHHHHHHhhHHHHHH
Q 000499 610 VEL----------------------------RVDQRNALQQEIYCLKEELNE 633 (1460)
Q Consensus 610 v~~----------------------------~~~ek~aLq~el~~lkee~~~ 633 (1460)
+.+ ..+|+--||-++.++++-+-.
T Consensus 82 LARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAi 133 (351)
T PF07058_consen 82 LARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAI 133 (351)
T ss_pred HHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 764 357888999999988877643
No 302
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=37.88 E-value=7.3e+02 Score=33.05 Aligned_cols=83 Identities=13% Similarity=0.095 Sum_probs=48.6
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhH--HhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcc
Q 000499 755 KLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLI--TERVNLVSQLDIARKGLKDLEKSYAELEGRYLG 832 (1460)
Q Consensus 755 ~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~--~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~ 832 (1460)
.+..|+..-.+.+.-++.++..++.++...|..+..++.++..+- .+-..+.+++..++.++..+..+..++..+|..
T Consensus 257 ~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~ 336 (726)
T PRK09841 257 NIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKK 336 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345555555566666666777777777777777777776663322 344555566666666666665555555555544
Q ss_pred hHHHH
Q 000499 833 LEEEK 837 (1460)
Q Consensus 833 lq~Ek 837 (1460)
-.-..
T Consensus 337 ~hP~v 341 (726)
T PRK09841 337 DHPTY 341 (726)
T ss_pred cCchH
Confidence 33333
No 303
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=37.49 E-value=5.6e+02 Score=27.70 Aligned_cols=115 Identities=13% Similarity=0.144 Sum_probs=70.6
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh--------hHhhhHHHHHHHHHHHHHH
Q 000499 233 GKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLS--------EQASIAEAEVQTLKEALAR 304 (1460)
Q Consensus 233 ~kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~--------era~~ae~E~~sLk~~la~ 304 (1460)
.+|..||+.-.+.|..+|+-+-.+..-|.+--.=+..-+.-+.+ .+++.++ ++-.+-...++.+...+..
T Consensus 11 ~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e--ae~k~~~~~a~~P~~~~~~~wqlkvr~a~~dv~n 88 (136)
T PF11570_consen 11 EAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKE--AEIKQDEFFANNPPHEYGRGWQLKVRRAQKDVQN 88 (136)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCTT-TTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHhcccccccCCCccccccHHHHHHHHHHHHHHH
Confidence 47899999999999999999888777777655545444555555 4444443 3344666788888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHH
Q 000499 305 LETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEI 349 (1460)
Q Consensus 305 Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~ 349 (1460)
-+.+..++---+.+.-+-|+.-..-++.|-+.-+.-..+..+|+.
T Consensus 89 kq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~eskk~dAen 133 (136)
T PF11570_consen 89 KQNKLKAAQKELNAADEELNRIQAALSQAMERRKQKESKKKDAEN 133 (136)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 777777776555555555555555555554444444444444443
No 304
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=37.18 E-value=5.8e+02 Score=27.79 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000499 496 QELTEKQKELGRLWTCIQE 514 (1460)
Q Consensus 496 qeL~eK~~Ei~~Lq~slq~ 514 (1460)
..++++..|+.+|+.....
T Consensus 56 ~kIeERn~eL~~Lk~~~~~ 74 (177)
T PF13870_consen 56 EKIEERNKELLKLKKKIGK 74 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456666777777766655
No 305
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=36.78 E-value=8.8e+02 Score=29.76 Aligned_cols=28 Identities=7% Similarity=0.087 Sum_probs=14.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000499 332 RAEADAVELSDRASKAEIEAQTLKLDLA 359 (1460)
Q Consensus 332 ~aqeeak~lneRa~~AE~E~~~LKqel~ 359 (1460)
-..+....+..++..++.++..++..-.
T Consensus 175 fl~~ql~~~~~~l~~ae~~l~~fr~~~~ 202 (444)
T TIGR03017 175 WFVQQIAALREDLARAQSKLSAYQQEKG 202 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3334444445555556666666665443
No 306
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=36.59 E-value=5.6e+02 Score=28.73 Aligned_cols=76 Identities=25% Similarity=0.344 Sum_probs=41.2
Q ss_pred HHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhHhHHHHH
Q 000499 319 CLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEEC-SRMISALEDKLLHSEEDSKRIN 397 (1460)
Q Consensus 319 ClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQc-LE~IS~LE~ki~~aee~~~~ln 397 (1460)
+..+|..|+..+..+...-....+|. ..-.+++.|+.++..+..+.+ .|..| -+.|..+...+..+-+.+.+-+
T Consensus 81 ~~~~i~~l~~~i~~~~~~r~~~~eR~-~~l~~l~~l~~~~~~l~~el~----~~~~~Dp~~i~~~~~~~~~~~~~anrwT 155 (188)
T PF03962_consen 81 LEKKIEELEEKIEEAKKGREESEERE-ELLEELEELKKELKELKKELE----KYSENDPEKIEKLKEEIKIAKEAANRWT 155 (188)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHHHHHHHHH----HHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555554422222222333 255666677777777766555 24444 3667777777666666666665
Q ss_pred HH
Q 000499 398 KV 399 (1460)
Q Consensus 398 ~~ 399 (1460)
.-
T Consensus 156 DN 157 (188)
T PF03962_consen 156 DN 157 (188)
T ss_pred hh
Confidence 53
No 307
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=36.27 E-value=7.1e+02 Score=28.49 Aligned_cols=187 Identities=18% Similarity=0.243 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHH--------HHHHHH----HHHH
Q 000499 251 AEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETE--------REANIR----QYQQ 318 (1460)
Q Consensus 251 tEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~E--------kea~Ll----qykq 318 (1460)
.++-.+.-.|+..+.-+.++...-. +...|+..+..|-.+++.++..|..+... ...++- ++.+
T Consensus 14 ~~~~~~i~~l~~al~~L~~~~~~~~----~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~ 89 (240)
T PF12795_consen 14 PEQKALIQDLQQALSFLDEIKKQKK----RAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQ 89 (240)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHH
Confidence 4455556666666666665544333 33345555555666666666666655333 001111 2222
Q ss_pred HHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q 000499 319 CLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINK 398 (1460)
Q Consensus 319 ClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~ 398 (1460)
-...+..++..++........+..|..+|...+...+..+...+.....+. ..-+..+. +.....+..
T Consensus 90 ~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~----------~~~~~~l~--~a~~~~l~a 157 (240)
T PF12795_consen 90 EQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLP----------PNGESPLS--EAQRWLLQA 157 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccC----------CCCcchhh--HHHHHHHHH
Confidence 233344455555555555555555555555555555554444443222110 00000111 111112333
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 399 VADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLH 453 (1460)
Q Consensus 399 ~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~ 453 (1460)
+..-+..++..+...+.....--+-...+.+-+..++..++..+..-|+-+++.+
T Consensus 158 e~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R 212 (240)
T PF12795_consen 158 ELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKR 212 (240)
T ss_pred HHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556666665555555555666666667777777777666666666544
No 308
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=36.14 E-value=8.5e+02 Score=32.43 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 000499 239 ILTLKNALA 247 (1460)
Q Consensus 239 I~~Lkk~i~ 247 (1460)
++.|++.|.
T Consensus 211 ~~~l~~~l~ 219 (726)
T PRK09841 211 INALQETFT 219 (726)
T ss_pred HHHHHhcCe
Confidence 344444433
No 309
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=35.67 E-value=9.9e+02 Score=30.02 Aligned_cols=221 Identities=25% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhh
Q 000499 408 ERLKQALGKLTEEKEALALQYQ----------------------QCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKG 465 (1460)
Q Consensus 408 ~~Lk~~l~~L~eekeal~l~~q----------------------q~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~ 465 (1460)
..|.++|..|+...+++.++.. -|+--+..||.-|.+.=+++.|
T Consensus 294 ~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQR-------------- 359 (593)
T KOG4807|consen 294 EALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQR-------------- 359 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHH--------------
Q ss_pred HHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhccHHHHHHHH
Q 000499 466 AEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTL-QHLHSQSQDELRSLA 544 (1460)
Q Consensus 466 lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~L-q~LhSqSQeE~~~L~ 544 (1460)
..+++++.|+.|-+-| +-.+-------|+..+..-++|..|-++---+++.= .-|..|-++++.+++
T Consensus 360 ------qHqRELekLreEKdrL------LAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvq 427 (593)
T KOG4807|consen 360 ------QHQRELEKLREEKDRL------LAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQ 427 (593)
T ss_pred ------HHHHHHHHHHHHHHhh------hhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH-----------HHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHH---------
Q 000499 545 AELQNRAQI-----------LKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIG--------- 604 (1460)
Q Consensus 545 ~Ei~~~~~~-----------L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~--------- 604 (1460)
-|++-+-.. ...++...+.|..=-+.-+|=|.-=-|+|. .|-.||..|+....
T Consensus 428 RELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnn-------RLaaEItrLRtlltgdGgGtGsp 500 (593)
T KOG4807|consen 428 RELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNN-------RLAAEITRLRTLLTGDGGGTGSP 500 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-------HHHHHHHHHHHHhccCCCCCCCc
Q ss_pred ------HHHHHHHHhhhhHHH--HHHHHHhhHHHHHHHHH-------HHHHHHHHHhhcCCCccchhhhHHH
Q 000499 605 ------KLEAEVELRVDQRNA--LQQEIYCLKEELNELNK-------KHQAMVEQVESVSLNPENFGLSVKE 661 (1460)
Q Consensus 605 ------kLe~Ev~~~~~ek~a--Lq~el~~lkee~~~Ln~-------k~~~l~e~l~~l~~~~e~~~~~Vke 661 (1460)
.-|-||-++|-|.+. |.+++.|+|+++.-..+ +|+.+--+|+-.+...+|--+.+|+
T Consensus 501 laqgkdayELEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKakadcdIsrLKE 572 (593)
T KOG4807|consen 501 LAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAKADCDISRLKE 572 (593)
T ss_pred cccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhhhccHHHHHH
No 310
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=35.33 E-value=6.1e+02 Score=28.44 Aligned_cols=74 Identities=18% Similarity=0.332 Sum_probs=44.5
Q ss_pred HHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 455 ELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQT 528 (1460)
Q Consensus 455 Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~ 528 (1460)
+|+....+|.+-..+|..|..-|.-|...++.....+..+..++.....++..++.-++.....|-..+.++..
T Consensus 61 dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~ 134 (182)
T PF15035_consen 61 DLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQ 134 (182)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445554445566666666666777777777776666666666666666666666555555555555444
No 311
>PRK09343 prefoldin subunit beta; Provisional
Probab=35.27 E-value=3.1e+02 Score=28.55 Aligned_cols=108 Identities=17% Similarity=0.199 Sum_probs=68.9
Q ss_pred HHHHHHhHhHHHHHHhHhhhhhhhhhhhhHHHHhhhhHHhhhhhhhhhhhHHHHHhhhccchhhhhhhHHHHHHHHHHHH
Q 000499 1096 SLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEKHSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLS 1175 (1460)
Q Consensus 1096 ~l~~~l~~l~~s~~~lq~e~~~~~~e~~sL~k~~~~l~e~~~~lEden~~~l~E~i~~~~ls~~~~~~~~Ek~~~l~~L~ 1175 (1460)
++..++-.+-..|+.+|.++..+......|.....+..-...-++. ++.=+.||++++.==+ .
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~-----------L~~d~~VYk~VG~vlv--~---- 66 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEK-----------LPDDTPIYKIVGNLLV--K---- 66 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCCcchhHHHhhHHHh--h----
Confidence 4556666677788888888888888888888777765433333322 2222334554443111 0
Q ss_pred HhHhhhhcchhhHHHHHHHhhhhhhHHHHhhHHHHHHHHhhHHHHHhh
Q 000499 1176 ENLDKLGCINNELEEKVRLKDGKLEDVQMQNSLLKQSLEKSENELVAI 1223 (1460)
Q Consensus 1176 e~l~~L~~~~~eL~~~v~~l~~kle~~e~en~~Lk~~le~~~~eL~~~ 1223 (1460)
.....+..+|..+++....++..++....++.+.+..+...|.++
T Consensus 67 ---qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 67 ---VDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123345667777888888888888888888888888777766443
No 312
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=35.05 E-value=1.4e+03 Score=31.58 Aligned_cols=180 Identities=20% Similarity=0.259 Sum_probs=96.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000499 288 ASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEA 367 (1460)
Q Consensus 288 a~~ae~E~~sLk~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa 367 (1460)
+..+-.++..++..+...-.+.-+...||+.-++-+ +-.+.+.+- -+.++..+.+-|+.+++.+. +
T Consensus 335 ~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~l---e~~~~e~q~-------~~qe~~~e~eqLr~elaql~----a 400 (980)
T KOG0980|consen 335 IEQLSREVAQLKAQLENLKEEARRRIEQYENQLLAL---EGELQEQQR-------EAQENREEQEQLRNELAQLL----A 400 (980)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHhHH-------HHHHHHHHHHHHHHHHHHHH----H
Confidence 334444555555555544455555555665554443 222222222 22334555557888887774 4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 368 AVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEE 447 (1460)
Q Consensus 368 ~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQE 447 (1460)
...|.+++...+..++++....+.--..+.+...+++.+=..|..+.++.....++.....+........|...+...+.
T Consensus 401 ~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~ 480 (980)
T KOG0980|consen 401 SRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQR 480 (980)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777888888877776665555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhH
Q 000499 448 EAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLH 481 (1460)
Q Consensus 448 Ev~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~ 481 (1460)
+..|+..-.+.....+..++.....|-.+...++
T Consensus 481 ~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq 514 (980)
T KOG0980|consen 481 AAGRAETKTESQAKALESLRQELALLLIELEELQ 514 (980)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444444444444444444333333333333
No 313
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.32 E-value=1.2e+03 Score=30.58 Aligned_cols=262 Identities=18% Similarity=0.175 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 000499 447 EEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAET-- 524 (1460)
Q Consensus 447 EEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~-- 524 (1460)
-+.++|+.-|+....-+.+.|.....|......|.+--.+..-++...+.-|++|..++..+..-+.+-+....+|-+
T Consensus 338 ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~p 417 (654)
T KOG4809|consen 338 KENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNP 417 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCh
Confidence 333444444444444444444444444444555555555666677777888899999999998888775554443322
Q ss_pred ----HHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHH-HHHHHHHH
Q 000499 525 ----AFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKN-LQDEILSL 599 (1460)
Q Consensus 525 ----aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~-LQdEi~~L 599 (1460)
-...++.-.+--.++...-..+...+...++++++-++|=-.-+..+. .+...+|-+ +.+ .|.++.-+
T Consensus 418 e~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiaele---r~~kdqnkk----vaNlkHk~q~Ek 490 (654)
T KOG4809|consen 418 EFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELE---RHMKDQNKK----VANLKHKQQLEK 490 (654)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcC---chhhhhhhH----HhhHHHHHHHHH
Confidence 123334444444455555555566667777777777766433333221 223333332 222 23333333
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHH--HHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHh-
Q 000499 600 RETIGKLEAEVELRVDQRNALQQEIYCLKEELNELN--KKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERD- 676 (1460)
Q Consensus 600 kE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln--~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~- 676 (1460)
++-..-+ -.....-+.++ .+|..++ ..+-.|.-.-+.|-+.+.++
T Consensus 491 kk~aq~l------------------ee~rrred~~~d~sqhlq~e--------------el~~alektkQel~~tkarl~ 538 (654)
T KOG4809|consen 491 KKNAQLL------------------EEVRRREDSMADNSQHLQIE--------------ELMNALEKTKQELDATKARLA 538 (654)
T ss_pred HHHHHHH------------------HHHHHHHhhhcchHHHHHHH--------------HHHHHHHHHhhChhhhhhHHH
Confidence 3322211 11111111111 1222222 23333333344444443333
Q ss_pred -----HHHHHHHHHHHHH-----HHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhh
Q 000499 677 -----RCEKVALLEKLEI-----MEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQL 746 (1460)
Q Consensus 677 -----~~EK~~L~~kLq~-----mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQL 746 (1460)
.+||.+.+.+|.+ ++..++....++++= +==|..|..-+-+-++..-++.+.....-++.-.+-|+
T Consensus 539 stqqslaEke~HL~nLr~errk~Lee~lemK~~a~k~~----i~~d~~~~~~~~~~~~~~k~~~ev~~~~~~k~~~~~ql 614 (654)
T KOG4809|consen 539 STQQSLAEKEAHLANLRIERRKQLEEILEMKKPAWKPG----IHADMWRETHKPSNETVTKGSTEVTLAECLKWLTTFQL 614 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC----CCHHHHHHHhhhhhhHHHhhHHHHHHHHHHccccHHHH
Confidence 3577788888877 333333334444331 12244555556666666666666666666666666555
Q ss_pred hHHHH
Q 000499 747 QDVNE 751 (1460)
Q Consensus 747 q~~~~ 751 (1460)
-..+.
T Consensus 615 ~~~~~ 619 (654)
T KOG4809|consen 615 VSIGL 619 (654)
T ss_pred HHHHH
Confidence 54443
No 314
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=34.02 E-value=51 Score=42.60 Aligned_cols=108 Identities=20% Similarity=0.163 Sum_probs=0.0
Q ss_pred hhhhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH-hhhhHHHH
Q 000499 860 SFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQ-ESSLSEKL 938 (1460)
Q Consensus 860 ~~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~~~AqieifiLq~~l~Dl~~kn~~ll~EcQk~~e-as~~se~l 938 (1460)
....+|..-|+.|...+..|+++...|...++.=..++. .|=+.|+ .--.|++.|+. .+.++...
T Consensus 200 ~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~-------~LW~~L~-------~~~ee~~~F~~~~~~ls~~~ 265 (619)
T PF03999_consen 200 ESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIE-------ELWNRLD-------VPEEEREAFLEENSGLSLDT 265 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhC-------CCHHHHHHHhhccCcchHHH
Confidence 345678888888888888888877776666553322222 2222222 22334554543 46678889
Q ss_pred HHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 000499 939 IHKLENENCEQQ-EEMRSLVDQIKVLRVQLYQLLEILEIDADHG 981 (1460)
Q Consensus 939 IseLe~E~~~~q-~e~~~L~~~~~~Lr~gi~qv~k~L~i~~~~g 981 (1460)
|..++.|..-++ .....+-.-|.+.|..|......+.+..+..
T Consensus 266 i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer 309 (619)
T PF03999_consen 266 IEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEER 309 (619)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 999999987744 4555666677999999999998887755444
No 315
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=33.93 E-value=3.5e+02 Score=26.01 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=50.2
Q ss_pred HHHHHHHhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 000499 994 TLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQS 1056 (1460)
Q Consensus 994 ~~l~~i~~~i~~l~~s~~~~q~enq~~~vEnsvL~t~L~ql~~e~~~L~~Ek~~L~~E~~~~s 1056 (1460)
..+..+.+.+..+-.-+...+.+|-.+.-|+...+.-|+..-.+..+|..|..+|.+|+....
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555666666666677788888889999999999999999999999999999999876654
No 316
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=33.93 E-value=7.8e+02 Score=28.32 Aligned_cols=124 Identities=24% Similarity=0.254 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhh---
Q 000499 404 ESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTL--- 480 (1460)
Q Consensus 404 e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L--- 480 (1460)
..++=.|+..+...+...+....+...+...+.+-..++-..+.++.|...|++-+..++..+|.....|-.....+
T Consensus 30 ~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~ 109 (202)
T PF06818_consen 30 DSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRL 109 (202)
T ss_pred HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccc
Confidence 44555666666666677777777777777777888888888888999999998888888877776644443333332
Q ss_pred HHHHHHHHH----Hhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 481 HSELESMVQ----KMGS--QSQELTEKQKELGRLWTCIQEERLRFVEAETAFQ 527 (1460)
Q Consensus 481 ~sE~e~L~e----kl~~--~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~ 527 (1460)
..+...+.. +.+. -...+.....+|++|+.-+..++++.-+--..|.
T Consensus 110 ~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe 162 (202)
T PF06818_consen 110 KRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFE 162 (202)
T ss_pred hhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 000000000 1100 0123555667788888888877766655555544
No 317
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=33.86 E-value=57 Score=39.38 Aligned_cols=120 Identities=28% Similarity=0.315 Sum_probs=21.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHH-------HHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 000499 710 ELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNE-------NLKKLSDENNFLVNSLFDANAEVEGLRAKSK 782 (1460)
Q Consensus 710 ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~-------~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k 782 (1460)
.|..+|+.+-+||-++.+|.+-.+.+.+-=..|-++|+.+.- .|..|.-..+-|..++.++...+-++...+-
T Consensus 29 DLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls 108 (326)
T PF04582_consen 29 DLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLS 108 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhh
Confidence 456666666677766666666555544333333333332222 2223333333344444444444444444444
Q ss_pred HHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q 000499 783 SLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGR 829 (1460)
Q Consensus 783 ~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k 829 (1460)
+-..+.-.+.-.-+.+..+..+|.+-|..+...+-+|+++...+|..
T Consensus 109 ~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 109 DHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcC
Confidence 44444444444444445555666666666666666666666665554
No 318
>PRK11519 tyrosine kinase; Provisional
Probab=33.58 E-value=1.2e+03 Score=30.99 Aligned_cols=10 Identities=40% Similarity=0.448 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 000499 239 ILTLKNALAK 248 (1460)
Q Consensus 239 I~~Lkk~i~~ 248 (1460)
+..|++.|..
T Consensus 211 ~~~l~~~l~V 220 (719)
T PRK11519 211 INNLQNNLTV 220 (719)
T ss_pred HHHHHhcceE
Confidence 4445554433
No 319
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=33.24 E-value=5.9e+02 Score=33.51 Aligned_cols=48 Identities=25% Similarity=0.386 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 402 KAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEA 449 (1460)
Q Consensus 402 ~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv 449 (1460)
-....+..+...+..|++++..+...+.++...|..|+.++.+...++
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV 466 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777777777777777777777777777777776666555443
No 320
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=32.60 E-value=2e+02 Score=27.17 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHH
Q 000499 421 KEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAE 467 (1460)
Q Consensus 421 keal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE 467 (1460)
...+..++--....|..|-..+..+|.++.+|...+..+..+|+++.
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444445556666666777777777777777777777777654
No 321
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=32.48 E-value=6.9e+02 Score=27.24 Aligned_cols=109 Identities=18% Similarity=0.248 Sum_probs=50.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHH
Q 000499 407 VERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELES 486 (1460)
Q Consensus 407 v~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~ 486 (1460)
...+..+|..-+.+.-.+...+-..+..+...-..+.....+...+..+|......+..+.............+.....+
T Consensus 51 n~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~ 130 (177)
T PF13870_consen 51 NQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKK 130 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444445555555555555555555555555555555444444444444444444444
Q ss_pred HHHHhhh-----hhHHHHHHHHHHHHHHHHHHHH
Q 000499 487 MVQKMGS-----QSQELTEKQKELGRLWTCIQEE 515 (1460)
Q Consensus 487 L~ekl~~-----~~qeL~eK~~Ei~~Lq~slq~E 515 (1460)
+....+. ..........++..++..+..-
T Consensus 131 l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l 164 (177)
T PF13870_consen 131 LRQQGGLLGVPALLRDYDKTKEEVEELRKEIKEL 164 (177)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443332 2223344445555555555543
No 322
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=32.37 E-value=4.7e+02 Score=29.40 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHH--------HHHHHHHHHhhhhhhhHhHHH-----HHH
Q 000499 333 AEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVK-YEE--------CSRMISALEDKLLHSEEDSKR-----INK 398 (1460)
Q Consensus 333 aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lq-yqQ--------cLE~IS~LE~ki~~aee~~~~-----ln~ 398 (1460)
++..-.-+--++.+-.-++..+|.++.....+-.-..+. ++| |...|-.|+.+|..++..... +|+
T Consensus 59 ~Edtf~nll~~a~k~~~~a~~~Kse~~~~r~~L~l~FI~sf~~Y~~leL~s~~~ei~~L~~kI~~L~~~in~~~k~~~n~ 138 (181)
T PF04645_consen 59 SEDTFNNLLLQAFKSNAEARNAKSELEMERSNLELSFIDSFNQYKNLELKSIKKEIEILRLKISSLQKEINKNKKKDLNE 138 (181)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 344444445567777777778888888777666655444 344 456788888888877766554 344
Q ss_pred HHHHHHHHHHHHHHH
Q 000499 399 VADKAESEVERLKQA 413 (1460)
Q Consensus 399 ~~e~~e~ev~~Lk~~ 413 (1460)
.++.++.++..+.++
T Consensus 139 ~i~slk~EL~d~iKe 153 (181)
T PF04645_consen 139 EIESLKSELNDLIKE 153 (181)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444555555555544
No 323
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.36 E-value=1.8e+02 Score=29.26 Aligned_cols=72 Identities=19% Similarity=0.235 Sum_probs=46.3
Q ss_pred HHHHHhhhhHhhhHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHhhhhhhccchhhhHHHHHHHHhhhhhhhhhhhhhh
Q 000499 1337 HELEKERKHAGLWETQATELFSELQISSVCEVLRNEKAHELSRACENLEDRSNSNDIEINQLKEKANALECENGGLKAHL 1416 (1460)
Q Consensus 1337 ~elq~~~~e~el~E~ea~~l~~dlq~ssv~e~L~eekv~El~~~ce~Le~~~~~k~~ei~~Lkerv~~le~En~~Lk~~L 1416 (1460)
.|+.....++...+.....++. |-.++++..+.+ +...|+.+-...+..|..+.+++..++.+...++..|
T Consensus 30 ~E~~~v~~EL~~l~~d~~vy~~------VG~vfv~~~~~e---a~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 30 NENKKALEELEKLADDAEVYKL------VGNVLVKQEKEE---ARTELKERLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHcCCCcchHHHH------hhhHHhhccHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777655555555 777888765555 4556666666666666666666666666666666655
Q ss_pred h
Q 000499 1417 A 1417 (1460)
Q Consensus 1417 s 1417 (1460)
.
T Consensus 101 ~ 101 (105)
T cd00632 101 Q 101 (105)
T ss_pred H
Confidence 4
No 324
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=32.20 E-value=2.3e+02 Score=32.45 Aligned_cols=80 Identities=25% Similarity=0.325 Sum_probs=58.1
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHhhhHhhHHHHHHHhhhhhhhhhhHhHHhhhhhhHHhhhhhhhhhhhhHHhHHHhhHH
Q 000499 1234 IANGKDLLSRKEKELFVAEQILCSLQNERTELHMKVEDLTCKYDEAKIIQEDQGKQIRKLTEDYDCQIKETRCIHELNMK 1313 (1460)
Q Consensus 1234 i~~~~~~l~qkd~elleae~~~~~~~~~~~El~~~ve~Lk~~~eea~~i~e~~ekqi~~Ls~~~~~q~~Ei~~l~e~N~~ 1313 (1460)
++-||..--|-+.+---+..+++.+...+.+|.+.|-++|.+|+-+++.-++. ++|-+ -..++||.-|.+.|+-
T Consensus 173 vAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~-r~ieE-----kk~~eei~fLk~tN~q 246 (259)
T KOG4001|consen 173 VAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEE-REIEE-----KKMKEEIEFLKETNRQ 246 (259)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHH-----HHHHHHHHHHHHHHHH
Confidence 33355444444555556777889999999999999999999999988766553 33322 2336799999999998
Q ss_pred HHHHHH
Q 000499 1314 LEAELG 1319 (1460)
Q Consensus 1314 Le~e~~ 1319 (1460)
|.+-+.
T Consensus 247 LKaQLe 252 (259)
T KOG4001|consen 247 LKAQLE 252 (259)
T ss_pred HHHHHh
Confidence 876543
No 325
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.11 E-value=2.5e+02 Score=30.96 Aligned_cols=28 Identities=14% Similarity=0.270 Sum_probs=15.2
Q ss_pred HHHHHHHhHHHHHhHhHHHHHHHHHHHH
Q 000499 318 QCLDKLSNMEKNISRAEADAVELSDRAS 345 (1460)
Q Consensus 318 qClE~Is~LE~~~s~aqeeak~lneRa~ 345 (1460)
=|+.++..+=..+...++.......++.
T Consensus 115 l~I~r~~~li~~l~~~~~~~~~~~kq~~ 142 (192)
T PF05529_consen 115 LVIRRVHSLIKELIKLEEKLEALKKQAE 142 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666665555555555554444443
No 326
>smart00338 BRLZ basic region leucin zipper.
Probab=31.98 E-value=60 Score=29.82 Aligned_cols=40 Identities=30% Similarity=0.400 Sum_probs=31.2
Q ss_pred hhhhHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHhhhHhH
Q 000499 1391 NDIEINQLKEKANALECENGGLKAHLAASIPAVISLKDSI 1430 (1460)
Q Consensus 1391 k~~ei~~Lkerv~~le~En~~Lk~~Lsay~~~i~sL~d~i 1430 (1460)
+..|+..|..++..|+.+|..|...++.+..-+..|.+..
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5568888888888888888888888888777777766543
No 327
>PLN03188 kinesin-12 family protein; Provisional
Probab=31.59 E-value=1.8e+03 Score=31.83 Aligned_cols=288 Identities=20% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHH--------------HHhhhchHhHHHHHHHHHHHhccCcccccc
Q 000499 519 FVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQIL--------------KDMGTRNQSLQEEVEKVKEENKGLNELNLS 584 (1460)
Q Consensus 519 ~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L--------------~~le~~k~~L~eev~~l~EEn~~L~e~n~S 584 (1460)
|.+.=+.+..|..|--|-.-|..--+.-=+...+++ .-|+-..-+|+.+-.-+++--..--|. +.
T Consensus 886 c~~qa~~i~ql~~lv~qyk~e~~~~~~~~~~~~~ki~~l~~~~dg~l~~~~~~~~~~~~~~~~~~~~~~~y~~~p~~-~~ 964 (1320)
T PLN03188 886 CTKQASEITQLNRLVQQYKHERECNAIIGQTREDKIIRLESLMDGVLSKEDFLEEELASLMHEHKLLKEKYENHPEV-LR 964 (1320)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhHHHHhhhcccccchhhhhhhhhhhhhhhHHHHHHHhhcChhh-hh
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh------------------
Q 000499 585 SAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVE------------------ 646 (1460)
Q Consensus 585 S~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~------------------ 646 (1460)
+..-+|..|+|+...|... ..+||++|+.+|+++| .+++.+...-.
T Consensus 965 ~~~e~~~~~~e~~~~~~~~---------d~~ErEvll~eI~dlr-------~qL~~~~d~s~~s~~~~~~~l~l~y~~~~ 1028 (1320)
T PLN03188 965 TKIELKRVQDELEHYRNFY---------DMGEREVLLEEIQDLR-------SQLQYYIDSSLPSARKRNSLLKLTYSCEP 1028 (1320)
T ss_pred hhHHHHHHHHHHHHHHhhc---------cchhHHHHHHHHHHHH-------HHHHhhcccccchhhhccchhhhhhhcCc
Q ss_pred ----hcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHH------HHHH-HHHHhhhhhhhhHhhhhHH
Q 000499 647 ----SVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEK------LLEK-NAVLENSLSDLNVELEGVR 715 (1460)
Q Consensus 647 ----~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mek------LlEk-ns~LE~SLSdan~ELegLR 715 (1460)
.++.=+++... ..|+..+.+.++-|+. |.++ -.-||.+-+-+..==-.|.
T Consensus 1029 ~~~~~~~~i~e~~~~-------------------~~e~~l~~er~~w~e~es~wislteelr~eles~r~l~Ekl~~EL~ 1089 (1320)
T PLN03188 1029 SQAPPLNTIPESTDE-------------------SPEKKLEQERLRWTEAESKWISLAEELRTELDASRALAEKQKHELD 1089 (1320)
T ss_pred ccccccccccccccc-------------------chhHHHHHHHHHHHHHhhhheechHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000499 716 DKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEK 795 (1460)
Q Consensus 716 eK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~ 795 (1460)
.-.++-||.-..|.--.-+|+ -.|-|.--+.++.-.|+.++-..-.=+.|++.--...-.|=-+ =-|..+|-.|-
T Consensus 1090 ~eK~c~eel~~a~q~am~gha----r~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~-~~f~~alaae~ 1164 (1320)
T PLN03188 1090 TEKRCAEELKEAMQMAMEGHA----RMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAE-SKFINALAAEI 1164 (1320)
T ss_pred HhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-HHHHHHHHHHH
Q ss_pred hhhHHh-----------HHHHHHhHHHHHH----------HHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHH
Q 000499 796 SCLITE-----------RVNLVSQLDIARK----------GLKDLEKSYAELEGRYLGLEEEKESTLQKVEEL 847 (1460)
Q Consensus 796 s~l~~E-----------k~~L~sQl~~~~~----------~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel 847 (1460)
|.|..| -..|..||.-+.+ +|+.-|.-.+--+.|+..++.|.+++..++++|
T Consensus 1165 s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~kl 1237 (1320)
T PLN03188 1165 SALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKL 1237 (1320)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 328
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=31.54 E-value=7.5e+02 Score=27.37 Aligned_cols=107 Identities=16% Similarity=0.255 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 241 TLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCL 320 (1460)
Q Consensus 241 ~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~LlqykqCl 320 (1460)
.++++|..++.=|+-++--++.+-.-|..+.++|......+...- ++-|.--..|.++-
T Consensus 3 Ii~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I---------------------~evD~Le~~er~aR 61 (159)
T PF05384_consen 3 IIKKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVI---------------------EEVDKLEKRERQAR 61 (159)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Confidence 688999999999999999999999999999888877655544333 33333333444444
Q ss_pred HHHHhHHHHH-hHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000499 321 DKLSNMEKNI-SRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAA 368 (1460)
Q Consensus 321 E~Is~LE~~~-s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~ 368 (1460)
-+++..-... .-++++.+..++.|.....++..++..-..|..-.|..
T Consensus 62 ~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~L 110 (159)
T PF05384_consen 62 QRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDEL 110 (159)
T ss_pred HHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554332222 23567777777777777777777777666665544443
No 329
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=31.29 E-value=1.1e+03 Score=29.05 Aligned_cols=40 Identities=25% Similarity=0.319 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 404 ESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLA 443 (1460)
Q Consensus 404 e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els 443 (1460)
-..+...+..+..-+..+|..++++|.+.=...-|+.++.
T Consensus 11 ~~~~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~ 50 (355)
T PF09766_consen 11 QFRIKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIK 50 (355)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 3444444555555556667777777766555555555554
No 330
>PRK04406 hypothetical protein; Provisional
Probab=31.29 E-value=2.5e+02 Score=27.31 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHH
Q 000499 422 EALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAE 467 (1460)
Q Consensus 422 eal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE 467 (1460)
..+..++--....|..|-..+..+|.++.+|...+.....+|++++
T Consensus 14 ~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 14 NDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333344444555666666677777777777777777777776654
No 331
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=30.77 E-value=7.1e+02 Score=29.72 Aligned_cols=89 Identities=19% Similarity=0.235 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000499 298 LKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSR 377 (1460)
Q Consensus 298 Lk~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE 377 (1460)
++.++..+..+.+...-+...+-..-.+|+.+|.+-.-|..+...|......===+++.|..+++.|-...--.|-+|..
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfR 246 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFR 246 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445555555667777766666655544444444333345778999999888887666777777
Q ss_pred HHHHHHhhh
Q 000499 378 MISALEDKL 386 (1460)
Q Consensus 378 ~IS~LE~ki 386 (1460)
-.+=||..+
T Consensus 247 Nl~yLe~ql 255 (267)
T PF10234_consen 247 NLDYLEHQL 255 (267)
T ss_pred hHHHHHHHH
Confidence 777777764
No 332
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=30.47 E-value=8.2e+02 Score=27.46 Aligned_cols=18 Identities=17% Similarity=0.036 Sum_probs=11.1
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 000499 994 TLLDQVTGKLKEMQISVL 1011 (1460)
Q Consensus 994 ~~l~~i~~~i~~l~~s~~ 1011 (1460)
.+|..|.+.+..+...|-
T Consensus 84 lLL~rvrde~~~~l~~y~ 101 (189)
T PF10211_consen 84 LLLLRVRDEYRMTLDAYQ 101 (189)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 377777777665555443
No 333
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=30.04 E-value=1.3e+02 Score=28.50 Aligned_cols=37 Identities=27% Similarity=0.461 Sum_probs=22.9
Q ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 000499 377 RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQA 413 (1460)
Q Consensus 377 E~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~ 413 (1460)
++|..||.++...+..+..||..+-.-...+..|+..
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~ 40 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQ 40 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888877777776544334444333333
No 334
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=30.04 E-value=59 Score=35.88 Aligned_cols=46 Identities=30% Similarity=0.410 Sum_probs=26.9
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000499 746 LQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEK 795 (1460)
Q Consensus 746 Lq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~ 795 (1460)
|+-++.+|-.--|+|++||..| .|.|.||..+--|.+-+..|+.|-
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888899999999999 778888777766666666665554
No 335
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=29.88 E-value=7.7e+02 Score=30.91 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Q 000499 340 LSDRASKAEIEAQTLKLDLARIEA 363 (1460)
Q Consensus 340 lneRa~~AE~E~~~LKqel~~l~~ 363 (1460)
+|++..--..|+-+||++++...+
T Consensus 315 LNdlteLqQnEi~nLKqElasmee 338 (455)
T KOG3850|consen 315 LNDLTELQQNEIANLKQELASMEE 338 (455)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667899999999998854
No 336
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=29.75 E-value=7.2e+02 Score=26.61 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCc
Q 000499 589 IKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNP 652 (1460)
Q Consensus 589 Ik~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~ 652 (1460)
+..+...+..|+..+.++..| -+...+.++-.|--=+.++..+.......|..+|..+
T Consensus 57 ~~~~~~~~~~l~~~~~kl~~E------~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 57 LEELASEVKELEAEKEKLKEE------ARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCc
Confidence 444555555566666665544 1245677887777777888888888888888888765
No 337
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=29.66 E-value=1.9e+02 Score=32.40 Aligned_cols=59 Identities=29% Similarity=0.408 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHH
Q 000499 536 SQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKL 606 (1460)
Q Consensus 536 SQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kL 606 (1460)
|-++...|-.+|..+..++.. |+.+...+--|++. ++|.+++-.+|.+|.+|++.|...
T Consensus 77 ~~eel~~ld~~i~~l~ek~q~-------l~~t~s~veaEik~-----L~s~Lt~eemQe~i~~L~kev~~~ 135 (201)
T KOG4603|consen 77 SDEELQVLDGKIVALTEKVQS-------LQQTCSYVEAEIKE-----LSSALTTEEMQEEIQELKKEVAGY 135 (201)
T ss_pred ChHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHH-----HHHhcChHHHHHHHHHHHHHHHHH
Confidence 335555566666666555544 44444444444433 356778999999999999877664
No 338
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=29.61 E-value=1.3e+03 Score=29.42 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=66.9
Q ss_pred hhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000499 281 SKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLAR 360 (1460)
Q Consensus 281 ~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~ 360 (1460)
-+..++|...+..++.-+.++.+.+-+++..-...|..-.-++...|..+.+.|+|...+|++-..++...+.+-.....
T Consensus 8 ~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~ 87 (459)
T KOG0288|consen 8 KSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLI 87 (459)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888888888888888888888999999999999999999998777777777776655544
Q ss_pred H
Q 000499 361 I 361 (1460)
Q Consensus 361 l 361 (1460)
.
T Consensus 88 ~ 88 (459)
T KOG0288|consen 88 A 88 (459)
T ss_pred H
Confidence 4
No 339
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=29.49 E-value=8.5e+02 Score=27.36 Aligned_cols=68 Identities=24% Similarity=0.269 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHH
Q 000499 400 ADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAE 467 (1460)
Q Consensus 400 ~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE 467 (1460)
++.+-..+++=+..+..|...+..+..+++++-..-..|...+.....++.++..|+......+..=+
T Consensus 62 Le~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee 129 (182)
T PF15035_consen 62 LEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEE 129 (182)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556677888888999999999999999999999999999999999888776666655433
No 340
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=29.32 E-value=8.8e+02 Score=27.50 Aligned_cols=177 Identities=16% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHhHhHHHHHHHH
Q 000499 267 LSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIR-----QYQQCLDKLSNMEKNISRAEADAVELS 341 (1460)
Q Consensus 267 ~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~Ll-----qykqClE~Is~LE~~~s~aqeeak~ln 341 (1460)
|.+++..|..+...+-..-......+..+..+.......+..-..||- --..++.+-...+......+.....+.
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~ 112 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVE 112 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000499 342 DRASKAEIEAQTLKLDLARIEAEKEAAVVKYE--ECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTE 419 (1460)
Q Consensus 342 eRa~~AE~E~~~LKqel~~l~~EKEa~~lqyq--QcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~e 419 (1460)
..+.++...+..|+..+.....-++....+++ +.-..+...-.. .-...+-...+.++..+..++.
T Consensus 113 ~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~------------~~~~~a~~~fer~e~ki~~~ea 180 (219)
T TIGR02977 113 ETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDS------------GRSDEAMARFEQYERRVDELEA 180 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------CCchhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 420 EKEALALQ-YQQCLEAISILEHKLARAEEEAQRLHSEL 456 (1460)
Q Consensus 420 ekeal~l~-~qq~~~kI~~LE~els~sQEEv~RL~~Ei 456 (1460)
..++.... -..+..++..++ .-+....++.+|+..+
T Consensus 181 ~aea~~~~~~~~l~~~l~~l~-~~~~vd~eLa~LK~~~ 217 (219)
T TIGR02977 181 QAESYDLGRKPSLEDEFAELE-ADDEIERELAALKAKM 217 (219)
T ss_pred HHHHhhccCCCCHHHHHHHhc-CCChHHHHHHHHHhhh
No 341
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=28.31 E-value=7e+02 Score=27.98 Aligned_cols=101 Identities=20% Similarity=0.310 Sum_probs=66.1
Q ss_pred HHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhH-H
Q 000499 694 LEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDAN-A 772 (1460)
Q Consensus 694 lEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n-~ 772 (1460)
++....+.+.+..++.+++.++.++..+++.+...+.....- .||..++..++.+...+..|..+.. +|++.. .
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~----~~~~~Dp~ 135 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELE----KYSENDPE 135 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCHH
Confidence 445566777888888888999999888888888876555433 7899999888888777777755444 222211 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 000499 773 EVEGLRAKSKSLEDSCLLLDNEKSCLI 799 (1460)
Q Consensus 773 ElE~lr~K~k~lEes~~~l~~e~s~l~ 799 (1460)
.++.++.....+-+...-+-++-.++.
T Consensus 136 ~i~~~~~~~~~~~~~anrwTDNI~~l~ 162 (188)
T PF03962_consen 136 KIEKLKEEIKIAKEAANRWTDNIFSLK 162 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 455555555555555555555444444
No 342
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=26.56 E-value=1.1e+03 Score=27.47 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 000499 481 HSELESMVQKMGSQSQELTEKQKELGRLWTCIQE 514 (1460)
Q Consensus 481 ~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~ 514 (1460)
-.+.+.++.-++..-+++..+..+|...+..+.+
T Consensus 208 ~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~ 241 (264)
T PF06008_consen 208 TREAEDLNRANQKNLEDLEKKKQELSEQQNEVSE 241 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555556677777777777766665
No 343
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=26.46 E-value=8.6e+02 Score=26.40 Aligned_cols=124 Identities=23% Similarity=0.223 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhh
Q 000499 589 IKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSK 668 (1460)
Q Consensus 589 Ik~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~ 668 (1460)
|.+|=+.|..|.-.+.+.-.|+|--..=.+||++++ +.||..-..|.+ .+.+=|+.+..
T Consensus 8 iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~EL-------DsL~~EkvhLee--------------ilnkKqe~l~i 66 (134)
T PF15233_consen 8 IEDLINRINELQQAKKKSSEELGEAQALWEALQREL-------DSLNGEKVHLEE--------------ILNKKQETLRI 66 (134)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHhhhHHHHHH--------------HHHHHHHHHHH
Confidence 667777788888888888888885555555665555 444443333333 33344444445
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHH--HHHHHhhhhhhhhHHHHHh
Q 000499 669 LKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVC--QNLLAEKSTLVAEKNSLFS 744 (1460)
Q Consensus 669 LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc--~sL~~eKS~L~sEK~~LvS 744 (1460)
|+--|....+|----...++... .--+....|++|-++-|+|=+|. +.|.-+++++-+=|.-|+.
T Consensus 67 Lqlhcqeke~eaqrq~~~~~eck-----------~R~~fe~qLE~lm~qHKdLwefh~~erLa~EI~~l~~sKEQLL~ 133 (134)
T PF15233_consen 67 LQLHCQEKESEAQRQQTLLQECK-----------LRLDFEEQLEDLMGQHKDLWEFHMPERLAREICALESSKEQLLK 133 (134)
T ss_pred HHHHHHHHHHHhhhhhhhhHhHH-----------HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHhc
Confidence 55555444433222222222211 22345557888888888887775 4588888888877776654
No 344
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.42 E-value=6.3e+02 Score=24.80 Aligned_cols=62 Identities=24% Similarity=0.400 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHh
Q 000499 423 ALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKM 491 (1460)
Q Consensus 423 al~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl 491 (1460)
-+...+++..++|.-|.-++-..-+.-+.|..|..+.... ...|+++|..|+.|-..-.+++
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~-------reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQ-------REALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555544444444444444444443322222 2234444555555544444444
No 345
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=26.35 E-value=1.3e+02 Score=39.92 Aligned_cols=63 Identities=25% Similarity=0.419 Sum_probs=39.8
Q ss_pred cccccccc------cCCCCCCCchHHhhHhhHHHHHHHHHHHhhhccchHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 000499 11 RKYSWWWD------SHISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAE 84 (1460)
Q Consensus 11 ~~~swww~------sh~~~~~s~wl~~~l~dm~~~vk~~l~li~ed~dsfakrAemyykkRpeLi~~vee~yr~yr~LAe 84 (1460)
+.++|||. -|+.|..|+.|- ......+.+|-|-|. -+..+.++-+.|... .
T Consensus 149 ~~~~wW~~r~l~~hq~vl~E~s~~l~----------~~l~v~~~~~~~~f~------------~~~~~le~a~~~l~~-y 205 (777)
T KOG1128|consen 149 RVLSWWLLRLLLIHQHVLQERSPSLF----------MKLQVYFAEDSDRFL------------AIQIHLECAYVFLQF-Y 205 (777)
T ss_pred HHHHHHHHHHHhHHHHHhcccchHHH----------HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH-H
Confidence 56899997 577788888776 233346677777776 234555665555443 4
Q ss_pred HhhhhhHHHHhh
Q 000499 85 RYDHATGALRQA 96 (1460)
Q Consensus 85 ryd~~~~el~~~ 96 (1460)
+|+.++--|..|
T Consensus 206 e~~~a~~~L~~a 217 (777)
T KOG1128|consen 206 EYEKAKDQLDSA 217 (777)
T ss_pred HHHhhhHHHHHH
Confidence 577766555544
No 346
>PRK00295 hypothetical protein; Provisional
Probab=26.18 E-value=2.3e+02 Score=26.95 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=23.4
Q ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 000499 377 RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQA 413 (1460)
Q Consensus 377 E~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~ 413 (1460)
+.|..||.++...+..+..||..+-+-...+..|...
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~q 41 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQ 41 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888877777777544434444333333
No 347
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=26.00 E-value=3.5e+02 Score=27.00 Aligned_cols=74 Identities=23% Similarity=0.385 Sum_probs=48.3
Q ss_pred HHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 380 SALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTE---EKEALALQYQQCLEAISILEHKLARAEEEAQRLH 453 (1460)
Q Consensus 380 S~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~e---ekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~ 453 (1460)
.....+|..+...-+.+..+++.+..+-..+-+.|+.+.. +.+.+..+...+-+.|..++..+....+++..+.
T Consensus 25 ~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 25 EEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666666667777666654 4666777777777777777777777776666554
No 348
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.00 E-value=1.1e+03 Score=27.66 Aligned_cols=48 Identities=25% Similarity=0.275 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 402 KAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEA 449 (1460)
Q Consensus 402 ~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv 449 (1460)
.++.++...+.++.-+.--++.+.+.++...+.|+.--..++.+++.+
T Consensus 90 ~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~ 137 (246)
T KOG4657|consen 90 GIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENA 137 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555666666666677777777666666666553
No 349
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=25.92 E-value=1.8e+03 Score=30.01 Aligned_cols=235 Identities=19% Similarity=0.218 Sum_probs=102.8
Q ss_pred ccccccccCCChhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhhhchhhHhh
Q 000499 217 ESYDIKARVPSESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSL-------ERLSNLESEVSHAREDSKGLSEQAS 289 (1460)
Q Consensus 217 e~~~~~~~~~sesER~~kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~sl-------ek~~~LE~~is~aQ~~~~~L~era~ 289 (1460)
+....+.+-..++-|-..++.......+....-+..+......-..+. .|+-.+|+-.--+|-+...-.++..
T Consensus 15 e~~~~~~q~a~~ttr~~e~e~~~~~ar~~~~~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~nd 94 (916)
T KOG0249|consen 15 EQAQSKEQLAPLTTRVPELEHSLPEARKDLIKAEEMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLND 94 (916)
T ss_pred HHhhcccccCCCcCCcHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchH
Confidence 333344444445555555555555554444333333333222222221 3444555555555544433333333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000499 290 IAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAV 369 (1460)
Q Consensus 290 ~ae~E~~sLk~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~ 369 (1460)
+.+.++- .+++. +-|-.|+...|...++.+++....--. +..+..==..|-+.++.+.. +
T Consensus 95 klE~~La-----------nkda~---lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~----a- 154 (916)
T KOG0249|consen 95 KLENELA-----------NKDAD---LRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTK----A- 154 (916)
T ss_pred HHHHHHh-----------Ccchh---hchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHH----H-
Confidence 3333222 23333 234456666677777766666554221 11111100012222211111 0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 370 VKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEA 449 (1460)
Q Consensus 370 lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv 449 (1460)
-+..-.-+..+.+++.++.++|.++.++....+. =.+.+..+-...+ +.+..=-.+..++=++.
T Consensus 155 ------ee~~~~~eer~~kl~~~~qe~naeL~rarqreem-------neeh~~rlsdtvd---ErlqlhlkermaAle~k 218 (916)
T KOG0249|consen 155 ------EEHSGNIEERTRKLEEQLEELNAELQRARQREKM-------NEEHNKRLSDTVD---ERLQLHLKERMAALEDK 218 (916)
T ss_pred ------HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhhccccccccH---HHHHHHHHHHHHHHHHH
Confidence 0222333444455555566666655555443321 1122222222222 33333333455566777
Q ss_pred HHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHH
Q 000499 450 QRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESM 487 (1460)
Q Consensus 450 ~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L 487 (1460)
+||-.+++...+.+-++......|-..+..|..+.+.|
T Consensus 219 n~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL 256 (916)
T KOG0249|consen 219 NRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQL 256 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 88888877777777666655444444444444444333
No 350
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.84 E-value=1.6e+03 Score=29.46 Aligned_cols=124 Identities=23% Similarity=0.335 Sum_probs=89.7
Q ss_pred HHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHH
Q 000499 554 LKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNE 633 (1460)
Q Consensus 554 L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~ 633 (1460)
+..-+..+++|.+-|.-+.- .|.+. +.+.++++++-+.|+-...++..++. .|.--+-+.+++..+
T Consensus 333 Ie~~~ke~kdLkEkv~~lq~---~l~ek----e~sl~dlkehassLas~glk~ds~Lk-------~leIalEqkkEec~k 398 (654)
T KOG4809|consen 333 IESFRKENKDLKEKVNALQA---ELTEK----ESSLIDLKEHASSLASAGLKRDSKLK-------SLEIALEQKKEECSK 398 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHH----HHHHHHHHHHHHHHHHHhhhhhhhhh-------HHHHHHHHHHHHHHH
Confidence 33444456666666666644 23333 44799999999999999888877665 344456677899999
Q ss_pred HHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 000499 634 LNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEK 692 (1460)
Q Consensus 634 Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mek 692 (1460)
++..+..--+-..+.-.+| +|...++.|.-+-..-+.+|++..+|-+-|++=|...+.
T Consensus 399 me~qLkkAh~~~ddar~~p-e~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeven 456 (654)
T KOG4809|consen 399 MEAQLKKAHNIEDDARMNP-EFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVEN 456 (654)
T ss_pred HHHHHHHHHHhhHhhhcCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9987755555555555555 478899999999999999999999888888777766554
No 351
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=25.75 E-value=6.6e+02 Score=30.22 Aligned_cols=84 Identities=14% Similarity=0.168 Sum_probs=35.5
Q ss_pred hhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 000499 705 SDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAE--KNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSK 782 (1460)
Q Consensus 705 Sdan~ELegLReK~K~LEesc~sL~~eKS~L~sE--K~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k 782 (1460)
.-+..+++.++.++...|..-..++.....+--+ -.....++..+...+..+.-+...|-..+.+-+-.+-.++.++.
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~ 252 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIK 252 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHH
Confidence 3444555555555555555555554443332211 12233333333333444444433333333333334444444444
Q ss_pred HHHHHH
Q 000499 783 SLEDSC 788 (1460)
Q Consensus 783 ~lEes~ 788 (1460)
.++...
T Consensus 253 ~l~~~i 258 (362)
T TIGR01010 253 SLRKQI 258 (362)
T ss_pred HHHHHH
Confidence 444443
No 352
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=25.37 E-value=1.6e+02 Score=28.39 Aligned_cols=64 Identities=23% Similarity=0.285 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHhhhhhhccchhhhHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHhhhHhHHhhh
Q 000499 1371 NEKAHELSRACENLEDRSNSNDIEINQLKEKANALECENGGLKAHLAASIPAVISLKDSIRSLE 1434 (1460)
Q Consensus 1371 eekv~El~~~ce~Le~~~~~k~~ei~~Lkerv~~le~En~~Lk~~Lsay~~~i~sL~d~i~~LE 1434 (1460)
.+.+..|+.+.+.|-..-...+.-|..|+..+...+..+..|+..++....-+.+|++....-|
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~~E 74 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKRAE 74 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 353
>PF08055 Trp_leader1: Tryptophan leader peptide; InterPro: IPR012638 This family consists of the tryptophan (trp) leader peptides. Tryptophan accumulation is the principal event resulting in down regulation of transcription of the structural genes of the trp operon. The leader peptide of the trp operon forms mutually exclusive secondary structures that would either result in the termination of transcription of the trp operon when tryptophan is in plentiful supply or vice versa [].
Probab=25.32 E-value=26 Score=25.32 Aligned_cols=9 Identities=44% Similarity=1.712 Sum_probs=7.2
Q ss_pred cccccccCC
Q 000499 13 YSWWWDSHI 21 (1460)
Q Consensus 13 ~swww~sh~ 21 (1460)
.-|||..|-
T Consensus 7 ~nwwwtahp 15 (18)
T PF08055_consen 7 QNWWWTAHP 15 (18)
T ss_pred cceeeeccc
Confidence 469999885
No 354
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=25.20 E-value=4.7e+02 Score=24.55 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 000499 425 ALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFA 461 (1460)
Q Consensus 425 ~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~ 461 (1460)
..+++++..-|..|-..+-.+++|..|-+.-|++...
T Consensus 16 ~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~ 52 (56)
T PF04728_consen 16 NSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQ 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 3333333334444444455667777777666665543
No 355
>PRK02793 phi X174 lysis protein; Provisional
Probab=25.19 E-value=2.4e+02 Score=27.16 Aligned_cols=48 Identities=27% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000499 377 RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEAL 424 (1460)
Q Consensus 377 E~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal 424 (1460)
.+|..||.+|.+.+..+..||..+-.-...+..|...+..|.....++
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 356
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=24.35 E-value=1.6e+03 Score=28.72 Aligned_cols=76 Identities=12% Similarity=0.208 Sum_probs=54.5
Q ss_pred HHHHHHHHHhH-----HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 000499 316 YQQCLDKLSNM-----EKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSE 390 (1460)
Q Consensus 316 ykqClE~Is~L-----E~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~ae 390 (1460)
+..|.+.|..| ++.+..|++++..--+|+.+|...+..+++.-+-+.=++++.. -+..|+.|+.++..++
T Consensus 225 L~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~-----~~~lI~~Le~qLa~~~ 299 (434)
T PRK15178 225 LSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITA-----IYQLIAGFETQLAEAK 299 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 45555555543 6677888888888888888888888888877666644444432 3578999999988888
Q ss_pred HhHHHH
Q 000499 391 EDSKRI 396 (1460)
Q Consensus 391 e~~~~l 396 (1460)
.....+
T Consensus 300 aeL~~L 305 (434)
T PRK15178 300 AEYAQL 305 (434)
T ss_pred HHHHHH
Confidence 777655
No 357
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=24.28 E-value=1.8e+02 Score=35.64 Aligned_cols=48 Identities=25% Similarity=0.318 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHH
Q 000499 422 EALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEK 469 (1460)
Q Consensus 422 eal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~ 469 (1460)
.++..++++++++|+.+|..+......+..+...|.....++.++|++
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 356778888888888888888887777777777777777788887775
No 358
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=24.19 E-value=1.1e+03 Score=27.03 Aligned_cols=88 Identities=20% Similarity=0.288 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccC
Q 000499 499 TEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGL 578 (1460)
Q Consensus 499 ~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L 578 (1460)
.....+|..|...+..|...+.+-+..+.. ..-+...++...|. ..-...+....+|..++..+.. ...-
T Consensus 124 ~~l~~~l~~l~~~~~~Er~~R~erE~~i~k------rl~e~~~~l~~~i~---~Ek~~Re~~~~~l~~~le~~~~-~~~~ 193 (247)
T PF06705_consen 124 QELVRELNELQEAFENERNEREEREENILK------RLEEEENRLQEKIE---KEKNTRESKLSELRSELEEVKR-RREK 193 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHhh
Confidence 345567888899999988888887776654 11233333433332 1223334455555555555532 2222
Q ss_pred cccccccHHHHHHHHHHHHHHHH
Q 000499 579 NELNLSSAESIKNLQDEILSLRE 601 (1460)
Q Consensus 579 ~e~n~SS~~sIk~LQdEi~~LkE 601 (1460)
++.+|.+ -..+|+..++.
T Consensus 194 ~~e~f~~-----~v~~Ei~~lk~ 211 (247)
T PF06705_consen 194 GDEQFQN-----FVLEEIAALKN 211 (247)
T ss_pred hhHHHHH-----HHHHHHHHHHH
Confidence 2333322 24556666555
No 359
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=24.07 E-value=2.7e+02 Score=36.34 Aligned_cols=193 Identities=18% Similarity=0.231 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHHHHhhh----hhhchHHHHhchHhhhhhHHHHh
Q 000499 808 QLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHAS----FVQLSETRLAGMESQISFLQEEG 883 (1460)
Q Consensus 808 Ql~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~q~h~~----~~k~se~~l~~lE~~is~LqEe~ 883 (1460)
........+..|...+..|.+.+......++....++..|+.-|.+-.++... ...++..-|..++.++..|++-.
T Consensus 201 ~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK 280 (619)
T PF03999_consen 201 SFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELK 280 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHH
Confidence 45556677777888888888888888888888999999999999887666553 36678888999999998888876
Q ss_pred hhhhhhhHHHHHHHHhhHHHHHHHH-HH-HHHHHhhhhh-hHHHHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHH---HH
Q 000499 884 LCRKKAYEEELDKALDAQIEIFITQ-KY-IQDLKEKNFS-LLFECQKLLQESSLSEKLIHKLENENCEQQEEMRS---LV 957 (1460)
Q Consensus 884 ~~r~~~~eeE~dk~~~AqieifiLq-~~-l~Dl~~kn~~-ll~EcQk~~eas~~se~lIseLe~E~~~~q~e~~~---L~ 957 (1460)
+-..+.| +..+..+|--|- +| +-+-+...|. .|.++ ..+.|+...|.|.......... ++
T Consensus 281 ~~~lk~~------I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~--------~~E~lL~~hE~Ei~~Lk~~~~~~k~Il 346 (619)
T PF03999_consen 281 KQNLKEF------IEKKRQEIEELWDKCHYSEEERQAFTPFYIDS--------YTEELLELHEEEIERLKEEYESRKPIL 346 (619)
T ss_dssp --------------------------------------------------------------------HHHHHHHHHHHH
T ss_pred HHhHHHH------HHHHHHHHHHHHHHhCCCHHHHHHHHHHhccc--------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555554 222333332221 11 1111111122 22222 2367777788877766555444 33
Q ss_pred HHHHHHHHHHHHHHHH--H-----hhcccCCCcchhhhhhhhHHHHHHHHhHHHHHHHHHHHhHhh
Q 000499 958 DQIKVLRVQLYQLLEI--L-----EIDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQ 1016 (1460)
Q Consensus 958 ~~~~~Lr~gi~qv~k~--L-----~i~~~~g~~d~~~~e~~l~~~l~~i~~~i~~l~~s~~~~q~e 1016 (1460)
+-+.+...-+.....- - ++...+|+ ...++.+-+.+..++=.-...|...+..-+++
T Consensus 347 ~~v~k~~~l~~~~~~Le~~~~D~~Rl~~RGg~--LLkEEk~rk~i~k~lPkle~~L~~~l~~wE~e 410 (619)
T PF03999_consen 347 ELVEKWESLWEEMEELEESSKDPSRLNNRGGH--LLKEEKERKRIQKKLPKLEEELKKKLEEWEEE 410 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-CCGG--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhcccccH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444433333222211 1 12233343 35555544555555555555555555555544
No 360
>PRK02119 hypothetical protein; Provisional
Probab=24.07 E-value=2.5e+02 Score=27.07 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=23.2
Q ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 000499 377 RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQA 413 (1460)
Q Consensus 377 E~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~ 413 (1460)
.+|..||.+|.+.+..+..||..+-+-...++.|...
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~q 45 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQ 45 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888877777777544444444444433
No 361
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=23.93 E-value=9.6e+02 Score=30.52 Aligned_cols=64 Identities=30% Similarity=0.279 Sum_probs=56.1
Q ss_pred hhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHH
Q 000499 655 FGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKA 720 (1460)
Q Consensus 655 ~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~ 720 (1460)
-..++.+||.+..+-+++-.+.+.||-.|-.+|..-..|.+=+.=+|+-.+- .|||-||.-++.
T Consensus 257 aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~r--kelE~lR~~L~k 320 (575)
T KOG4403|consen 257 AEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSR--KELEQLRVALEK 320 (575)
T ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHH--HHHHHHHHHHHH
Confidence 3457788999999999999999999999999999989999999999999888 599999987654
No 362
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.68 E-value=2.2e+02 Score=32.87 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=43.8
Q ss_pred CcCcccccccccCCCCCCCchHHhhHhhHHHHHHHHHHHhhhccchHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHhh
Q 000499 8 DSKRKYSWWWDSHISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYD 87 (1460)
Q Consensus 8 ~~~~~~swww~sh~~~~~s~wl~~~l~dm~~~vk~~l~li~ed~dsfakrAemyykkRpeLi~~vee~yr~yr~LAeryd 87 (1460)
.+...|+|| ......+=|+..|..+-......-.+..+. |......=-|-++..-+++.|||.|=+||+
T Consensus 72 ~~~~~~~~~----~~~~~~~~l~~~l~~~s~~~~~~s~~~~~~-------a~~~~~~vlE~Lk~~~d~l~S~r~lf~R~~ 140 (246)
T cd07597 72 LTARLYPWA----GDSDTWGDINEGLSSLSKHFQLLSDLSEDE-------ARAEEDGVLEKLKLQLDLLVSLRDLFERHE 140 (246)
T ss_pred CCCCCCCcc----CCCccHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345557777 222233335555555544444444444433 333333333555666688999999999999
Q ss_pred hhhH-HHHhhhhhh
Q 000499 88 HATG-ALRQAHRTM 100 (1460)
Q Consensus 88 ~~~~-el~~~~~~~ 100 (1460)
.... ....+-+.|
T Consensus 141 k~~~~~i~~l~~ri 154 (246)
T cd07597 141 KLSLNNIQRLLKRI 154 (246)
T ss_pred hcccccHHHHHHHH
Confidence 4333 333444444
No 363
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=23.40 E-value=67 Score=30.20 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=22.7
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhh
Q 000499 1395 INQLKEKANALECENGGLKAHLAASI 1420 (1460)
Q Consensus 1395 i~~Lkerv~~le~En~~Lk~~Lsay~ 1420 (1460)
|..|-+|++.+..||.+||+++.+-.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 66788999999999999999997643
No 364
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=23.14 E-value=4.8e+02 Score=32.03 Aligned_cols=83 Identities=24% Similarity=0.241 Sum_probs=64.6
Q ss_pred HHHHhHhHHHHHHhHhhhhhhhhhhhhHHHHhhhhHHhhhhhhhhhhhHHHHHhhhccchhhhhhhHHHHHHHHHHHHHh
Q 000499 1098 HMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEKHSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSEN 1177 (1460)
Q Consensus 1098 ~~~l~~l~~s~~~lq~e~~~~~~e~~sL~k~~~~l~e~~~~lEden~~~l~E~i~~~~ls~~~~~~~~Ek~~~l~~L~e~ 1177 (1460)
......|+.....|+.++-.+-.+.+-+.+.+..+...+..+|.+.+. -|-.+++||...+.+|..-
T Consensus 136 l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~-------------KF~~vLNeKK~KIR~lq~~ 202 (342)
T PF06632_consen 136 LDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYA-------------KFVLVLNEKKAKIRELQRL 202 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHhHHHHHHHHHHH
Confidence 344667777777888888888888888888899999999999988766 5888999999999999998
Q ss_pred HhhhhcchhhHHHHHH
Q 000499 1178 LDKLGCINNELEEKVR 1193 (1460)
Q Consensus 1178 l~~L~~~~~eL~~~v~ 1193 (1460)
|..+........++..
T Consensus 203 L~~~~~~~~~~~~~~~ 218 (342)
T PF06632_consen 203 LASAKEEEKSPKQERE 218 (342)
T ss_dssp HHHHHHHHHHHH----
T ss_pred HHHhhccccchhhhhc
Confidence 8887766655555443
No 365
>PRK00736 hypothetical protein; Provisional
Probab=23.05 E-value=2.8e+02 Score=26.37 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000499 377 RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEAL 424 (1460)
Q Consensus 377 E~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal 424 (1460)
.+|..||.+|...+..+..||..+-+--..+..|...+..|.+...++
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 366
>PRK04406 hypothetical protein; Provisional
Probab=22.83 E-value=2.7e+02 Score=27.04 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=21.2
Q ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 000499 377 RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQA 413 (1460)
Q Consensus 377 E~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~ 413 (1460)
.+|..||.+|...+..+..||..+-.--..+..|...
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~q 47 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQ 47 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777777777666666433333333333333
No 367
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=22.80 E-value=1.8e+02 Score=27.11 Aligned_cols=44 Identities=25% Similarity=0.394 Sum_probs=22.5
Q ss_pred HHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000499 379 ISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQ 429 (1460)
Q Consensus 379 IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~q 429 (1460)
|++||+++.... ..+..++.+.+.++..+.++++....+..-|.
T Consensus 2 i~elEn~~~~~~-------~~i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 2 IDELENELPRIE-------SSINTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544444 33444455555555555555555555544444
No 368
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=22.75 E-value=6.2e+02 Score=25.77 Aligned_cols=97 Identities=19% Similarity=0.273 Sum_probs=48.8
Q ss_pred HHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhH-----HhHHHHHHhHHHHHHH
Q 000499 741 SLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLI-----TERVNLVSQLDIARKG 815 (1460)
Q Consensus 741 ~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~-----~Ek~~L~sQl~~~~~~ 815 (1460)
.++.+++.+...++.+......|+..+..+..=++.+- .+.+....++-=-..|. .=+.+|...++.+...
T Consensus 7 ~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~----~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~ 82 (110)
T TIGR02338 7 NQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELE----RLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELR 82 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666666655544322221 11111111111111111 3345556666666666
Q ss_pred HHHHHHHHHHHhhhhcchHHHHHHHH
Q 000499 816 LKDLEKSYAELEGRYLGLEEEKESTL 841 (1460)
Q Consensus 816 l~~lek~~~ele~k~~~lq~Ek~~~~ 841 (1460)
++.++++...+..++.+++...+..+
T Consensus 83 i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 83 VKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666666665554443
No 369
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=22.46 E-value=2.3e+03 Score=30.07 Aligned_cols=137 Identities=17% Similarity=0.273 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhHhH
Q 000499 315 QYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIE-AEKEAAVVKYEECSRMISALEDKLLHSEEDS 393 (1460)
Q Consensus 315 qykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~-~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~ 393 (1460)
...+|-++|..|+..+-....++..+.+|-.. ..++..|.+..-.+. ...+.- |++-..--..+-..+..+.+..
T Consensus 196 ~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~-~~~Ie~l~~k~~~v~y~~~~~e---y~~~k~~~~r~k~~~r~l~k~~ 271 (1072)
T KOG0979|consen 196 KLTTKTEKLNRLEDEIDKLEKDVERVRERERK-KSKIELLEKKKKWVEYKKHDRE---YNAYKQAKDRAKKELRKLEKEI 271 (1072)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccchHhhhHH---HHHHHHHHHHHHHHHHHHHHhh
Confidence 46778888888888888888888887765421 222222211111110 011111 2222222233333444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 394 KRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSE 455 (1460)
Q Consensus 394 ~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~E 455 (1460)
.-++..++.++++..++..+|..++.+....-....+..+++...+.++-........++..
T Consensus 272 ~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~ 333 (1072)
T KOG0979|consen 272 KPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKA 333 (1072)
T ss_pred hhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666667777776666666666666666666665555555544444444433
No 370
>PRK00295 hypothetical protein; Provisional
Probab=22.40 E-value=4.4e+02 Score=25.13 Aligned_cols=44 Identities=14% Similarity=0.116 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHH
Q 000499 424 LALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAE 467 (1460)
Q Consensus 424 l~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE 467 (1460)
+..++--....|-.|-..+..+|.++.+|...+.....+|++++
T Consensus 10 LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 10 LESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444555666666677777777777777777777776654
No 371
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=22.37 E-value=1.7e+03 Score=28.40 Aligned_cols=74 Identities=22% Similarity=0.226 Sum_probs=62.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHH
Q 000499 229 SERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEAL 302 (1460)
Q Consensus 229 sER~~kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~l 302 (1460)
.+|-..|..++.---++.+.+-+++.....-|...-++|...|-+|...|++..-+.++-..++.+...+-...
T Consensus 12 dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~ 85 (459)
T KOG0288|consen 12 DQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDV 85 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888899999999999999999999999999999999999999998887666666666554444
No 372
>PRK04325 hypothetical protein; Provisional
Probab=22.11 E-value=2.9e+02 Score=26.67 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=21.6
Q ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q 000499 377 RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQ 412 (1460)
Q Consensus 377 E~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~ 412 (1460)
+.|..||.+|...+..+..||..+-.-...+..|..
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ 44 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQA 44 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778888777777777777653333333333333
No 373
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=21.93 E-value=1.6e+03 Score=28.02 Aligned_cols=29 Identities=14% Similarity=0.044 Sum_probs=18.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 248 KLEAEKEAGLLQYRQSLERLSNLESEVSH 276 (1460)
Q Consensus 248 ~LqtEKE~~~~qY~~slek~~~LE~~is~ 276 (1460)
.++++......++..-..+++.|+.++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 94 NEENQKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666665543
No 374
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.66 E-value=8.8e+02 Score=26.25 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=9.5
Q ss_pred HHHHhchHhhhhhHHHHhhhhhh
Q 000499 866 ETRLAGMESQISFLQEEGLCRKK 888 (1460)
Q Consensus 866 e~~l~~lE~~is~LqEe~~~r~~ 888 (1460)
...+..++.....+...-+-|++
T Consensus 144 ~ee~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 144 PEEKEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 375
>PRK00846 hypothetical protein; Provisional
Probab=21.56 E-value=3.1e+02 Score=27.06 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000499 377 RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEAL 424 (1460)
Q Consensus 377 E~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal 424 (1460)
.+|..||.++...+..+..||..+-+-...+..|+..+..+.+...++
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 376
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.42 E-value=8.9e+02 Score=28.46 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 423 ALALQYQQCLEAISILEHKLARAEEEAQRLHSEL 456 (1460)
Q Consensus 423 al~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei 456 (1460)
-+..|=+....+...||.++++.+.++..|+.||
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev 116 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQQTISSLRREV 116 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777888888888888888888877777773
No 377
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=21.29 E-value=3.8e+02 Score=30.55 Aligned_cols=89 Identities=24% Similarity=0.385 Sum_probs=48.1
Q ss_pred HHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHH
Q 000499 323 LSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADK 402 (1460)
Q Consensus 323 Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~ 402 (1460)
|+.|+.+++.++..+..- ......+...+|.++..| |.|++ +.+..+++.-...-.++..+.+-++.
T Consensus 105 La~Le~~l~~~~~~~~~~---~~~~~~~~~lvk~e~EqL--------L~YK~--~ql~~~~~~~~~~~~~l~~v~~Dl~~ 171 (195)
T PF12761_consen 105 LAELEEKLSKVEQAAESR---RSDTDSKPALVKREFEQL--------LDYKE--RQLRELEEGRSKSGKNLKSVREDLDT 171 (195)
T ss_pred HHHHHHHHHHHHHHHHhc---ccCCcchHHHHHHHHHHH--------HHHHH--HHHHhhhccCCCCCCCHHHHHHHHHH
Confidence 445666666555555431 111222333345544444 33443 22333333344556677777777888
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH
Q 000499 403 AESEVERLKQALGKLTEEKEAL 424 (1460)
Q Consensus 403 ~e~ev~~Lk~~l~~L~eekeal 424 (1460)
++..|..|+..+...+.+.+.+
T Consensus 172 ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 172 IEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888866666555443
No 378
>PRK04325 hypothetical protein; Provisional
Probab=21.28 E-value=4.3e+02 Score=25.57 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHH
Q 000499 426 LQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAE 467 (1460)
Q Consensus 426 l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE 467 (1460)
.++--...+|..|-..+..+|.++.+|...+.....+|++++
T Consensus 16 ~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 16 IQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344455666666777777777777777777777776654
No 379
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.70 E-value=5.8e+02 Score=28.15 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=18.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000499 331 SRAEADAVELSDRASKAEIEAQTLKLDLARIEAE 364 (1460)
Q Consensus 331 s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~E 364 (1460)
....++...+...+.+++.++++||.....++.|
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444555555555666666666655555443
No 380
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=20.64 E-value=5.6e+02 Score=30.81 Aligned_cols=35 Identities=29% Similarity=0.208 Sum_probs=21.1
Q ss_pred HHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHH
Q 000499 455 ELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQ 489 (1460)
Q Consensus 455 Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~e 489 (1460)
.|-++..||++.+++...=++++..|++++--+.+
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrE 103 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMRE 103 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 35566677777777655556666666655544433
No 381
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=20.62 E-value=1.1e+03 Score=25.38 Aligned_cols=61 Identities=26% Similarity=0.287 Sum_probs=35.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHhhhhhHHHHHh
Q 000499 411 KQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEA-QRLHSELDNGFAKLKGAEEKCL 471 (1460)
Q Consensus 411 k~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv-~RL~~Ei~~~~~kL~~lE~~~~ 471 (1460)
...+..|.....+...........+..|+........++ ..+..|++.+.--|.+++....
T Consensus 40 ~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~ 101 (136)
T PF04871_consen 40 EAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRK 101 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHH
Confidence 333333444333443344444555555665555555555 6677888888888888776643
No 382
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=20.53 E-value=84 Score=29.44 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.3
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhhhhhhH
Q 000499 1394 EINQLKEKANALECENGGLKAHLAASIPA 1422 (1460)
Q Consensus 1394 ei~~Lkerv~~le~En~~Lk~~Lsay~~~ 1422 (1460)
-|++|.+|++.|+.||.++++.+.+-...
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~~~~K~a~ 50 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAAIAKKSAS 50 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999876544
No 383
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=20.26 E-value=8.8e+02 Score=24.29 Aligned_cols=40 Identities=30% Similarity=0.340 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHH
Q 000499 443 ARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHS 482 (1460)
Q Consensus 443 s~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~s 482 (1460)
.....++.+|..+-..+.+.|..++.+|..||.-+..+..
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~ 74 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSR 74 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555555555555544444333
No 384
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=20.18 E-value=1e+03 Score=31.18 Aligned_cols=125 Identities=20% Similarity=0.266 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhh--hhhhHHHHHhhhhHHHHHHHhh
Q 000499 679 EKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKST--LVAEKNSLFSQLQDVNENLKKL 756 (1460)
Q Consensus 679 EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~--L~sEK~~LvSQLq~~~~~l~~L 756 (1460)
--.+..+.|..|+.|+-..+ ++|++.. |.++..++++--+. =.+-|.++++..+.+...+.+.
T Consensus 86 ~~~t~~~~L~~le~ll~~~~--~~sl~~~-------------L~~ff~s~q~la~~P~~~a~r~~vl~~a~~l~~~in~~ 150 (552)
T COG1256 86 YLDTRASQLSQLESLLSEPS--ESSLSTL-------------LNDFFNSLQELASNPSDTAARQAVLSKAQTLVNQINNT 150 (552)
T ss_pred HHHHHHHHHHHHHHHhCCCc--cccHHHH-------------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777776666 6666543 45555555544443 2267999999999998888777
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHH
Q 000499 757 SDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEE 836 (1460)
Q Consensus 757 ~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~E 836 (1460)
... |..-..+++.++.. -..+.+.|..||..+....... .--...+.+|...
T Consensus 151 ~~~---L~~l~~~i~~~I~~---------------------~V~~vNsLl~qIa~lN~qI~~~----~~~g~~~NdLlDq 202 (552)
T COG1256 151 YEQ---LTDLRKDINAEIAA---------------------TVDEVNSLLKQIADLNKQIRKV----KAAGNDPNDLLDQ 202 (552)
T ss_pred HHH---HHHHHHHHhHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHh----ccCCCCchhHHHH
Confidence 333 33333344444333 3355556666666666666555 2233444555555
Q ss_pred HHHHHHHHHH
Q 000499 837 KESTLQKVEE 846 (1460)
Q Consensus 837 k~~~~~~vee 846 (1460)
++.++.++-+
T Consensus 203 RD~Lv~eLs~ 212 (552)
T COG1256 203 RDQLVDELSQ 212 (552)
T ss_pred HHHHHHHHHh
Confidence 5666555544
No 385
>PRK02119 hypothetical protein; Provisional
Probab=20.16 E-value=5e+02 Score=25.09 Aligned_cols=40 Identities=15% Similarity=0.098 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHH
Q 000499 428 YQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAE 467 (1460)
Q Consensus 428 ~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE 467 (1460)
+---...|..|-..+..+|.++.+|...+.....+|++++
T Consensus 18 la~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 18 IAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334455555666667777777777777777777776654
Done!