Query 000499
Match_columns 1460
No_of_seqs 150 out of 164
Neff 4.2
Searched_HMMs 29240
Date Tue Mar 26 17:09:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000499.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_272-275//hhsearch_pdb/000499hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 1.0 1 1 87.5 16.8 357 228-584 784-1169(1184)
2 1c1g_A Tropomyosin; contractIl 1.0 1 1 60.1 42.6 37 240-276 2-38 (284)
3 3vkg_A Dynein heavy chain, cyt 1.0 1 1 42.1 28.9 56 431-486 1897-1952(3245)
4 3vkg_A Dynein heavy chain, cyt 1.0 1 1 37.8 28.0 18 1390-1407 3075-3092(3245)
5 3o0z_A RHO-associated protein 1.0 1 1 31.7 21.0 135 263-425 4-138 (168)
6 2v71_A Nuclear distribution pr 1.0 1 1 30.2 18.7 42 589-634 132-173 (189)
7 2i1j_A Moesin; FERM, coiled-co 1.0 1 1 29.7 6.9 110 290-413 332-441 (575)
8 3ol1_A Vimentin; structural ge 1.0 1 1 27.2 11.7 93 784-894 18-110 (119)
9 3oja_B Anopheles plasmodium-re 1.0 1 1 26.5 12.6 147 407-556 433-583 (597)
10 3u1c_A Tropomyosin alpha-1 cha 1.0 1 1 25.7 14.7 98 239-350 4-101 (101)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=87.55 Aligned_cols=357 Identities=17% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH---------------------HHHHHHHH
Q ss_conf 245534439999999999999986778889878--------9889999979---------------------99988986
Q 000499 228 ESERMGKAEMEILTLKNALAKLEAEKEAGLLQY--------RQSLERLSNL---------------------ESEVSHAR 278 (1460)
Q Consensus 228 esER~~kAe~EI~~Lkk~i~~LqtEKE~~~~qY--------~~slek~~~L---------------------E~~is~aQ 278 (1460)
|..|..+-..-|-.+|..+-..-+-+.+....+ |.....|... +.++....
T Consensus 784 E~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~~~rl~~klkpLl~~a~~~~El~~L~ 863 (1184)
T 1i84_S 784 EEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKD 863 (1184)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTTCCCCTHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999998741089999989999997357799999999
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 53110006744689999999999998999999989999899999875788886768878999899999999999999999
Q 000499 279 EDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDL 358 (1460)
Q Consensus 279 ~~v~~L~era~~ae~E~~sLk~~l~~Lq~ekea~llqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel 358 (1460)
.++..+.+.....+.....+...+..++.++.....++....+.+..++..+.........+.++....+.+...+...+
T Consensus 864 ~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l 943 (1184)
T 1i84_S 864 EELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERS 943 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56999888888889897897788776443126747787798888899999999999437899999999999999999999
Q 000499 359 ARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISIL 438 (1460)
Q Consensus 359 ~~l~~EKea~~lqyqQcLe~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~i~~L~eekeal~l~~qq~~~kI~~L 438 (1460)
..+..++....-.....-..+..++..+..++.....+...+..++.++..++..+..+......+..+.......+...
T Consensus 944 ~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~le~~l~~l~~el~~lee~l~~l~~e~~~le~~i~~l~~~l~~~ 1023 (1184)
T 1i84_S 944 QQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE 1023 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999898899999999999999998888889999999999999999888789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998979999999998874776535478987678773576688889999872220498999999998999999999999
Q 000499 439 EHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLR 518 (1460)
Q Consensus 439 E~elS~sQeEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qEL~eK~~Ei~~Lq~slqeE~~k 518 (1460)
+..+...+.+...+..++......+...+.....++.....+..+...+...+.....++......+..+..-++.-..+
T Consensus 1024 e~k~~~lek~~~~le~el~ele~~le~~e~~~~ele~~~~~le~el~~l~~el~el~~el~~le~~l~~le~el~~l~~~ 1103 (1184)
T 1i84_S 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALAR 1103 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 999989898988862102999999999999999999875215275999999999972057400002
Q 000499 519 FVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLS 584 (1460)
Q Consensus 519 ~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~S 584 (1460)
.-+....+..++......+.++..|..++.........++....++..++..+.+.+..+.+.|.+
T Consensus 1104 le~l~~~~~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ieel~~vn~a 1169 (1184)
T 1i84_S 1104 LEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTAT 1169 (1184)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998898789999999999999999999998889999999999999999999999987667999
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=60.05 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999867788898789889999979999889
Q 000499 240 LTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSH 276 (1460)
Q Consensus 240 ~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~ 276 (1460)
+.|++-+..++.+-+...-.+..--.++..++..+..
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~ 38 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQ 38 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3789999998876888999999999999999988988
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=42.10 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999989799999999988747765354789876787735766888899
Q 000499 431 CLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELES 486 (1460)
Q Consensus 431 ~~~kI~~LE~elS~sQeEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~ 486 (1460)
-++=|......+.+.+.++......+..|..||.++...-..|..+....+.+++.
T Consensus 1897 yLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~ 1952 (3245)
T 3vkg_A 1897 YLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDV 1952 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999988999999999999999999998999999
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=37.85 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 204538999999754454
Q 000499 1390 SNDIEINQLKEKANALEC 1407 (1460)
Q Consensus 1390 ~k~~eie~Lkerv~~le~ 1407 (1460)
....++.+|..|+.++..
T Consensus 3075 ~L~~W~~dL~~R~~~l~~ 3092 (3245)
T 3vkg_A 3075 SLSVWISDFSKRMQQLSE 3092 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999
No 5
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=1.00 E-value=1 Score=31.72 Aligned_cols=135 Identities=25% Similarity=0.286 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999979999889865311000674468999999999999899999998999989999987578888676887899989
Q 000499 263 SLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSD 342 (1460)
Q Consensus 263 slek~~~LE~~is~aQ~~v~~L~era~~ae~E~~sLk~~l~~Lq~ekea~llqykqClE~Is~LE~~~s~aqeeak~lne 342 (1460)
+-+|+..||+++.+|++..+.-.| +.++.=|+ .+.+...++..+.-++.+.+
T Consensus 4 ~neKi~~LekQL~E~n~kLk~EsE------~~~rlkK~----------------------~tEl~k~~~~~E~~~rELq~ 55 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEANDLLRTESD------TAVRLRKS----------------------HTEMSKSISQLESLNRELQE 55 (168)
T ss_dssp ------CTHHHHHHHHHHHHHHHH------HHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH
T ss_conf 248889999999999999998678------99999988----------------------99999889989999789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999995699988888888989789778877644312674778779888889999999999943789999
Q 000499 343 RASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKE 422 (1460)
Q Consensus 343 Ra~~AE~E~~~LKqel~~l~~EKea~~lqyqQcLe~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~i~~L~eeke 422 (1460)
+....+..-..|-++++.+.+.-+.-.--..|.-++|..|+.+|..+++++.++.....++..+...|...|..++.++.
T Consensus 56 ~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 56 RNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999988999999999999999999988877778999999999999999999999899999999999999899998997
Q ss_pred HHH
Q ss_conf 999
Q 000499 423 ALA 425 (1460)
Q Consensus 423 al~ 425 (1460)
.+.
T Consensus 136 ~~e 138 (168)
T 3o0z_A 136 NLE 138 (168)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 404
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=30.23 Aligned_cols=42 Identities=21% Similarity=0.384 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8978999999999999788999785533788999998569999999
Q 000499 589 IKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNEL 634 (1460)
Q Consensus 589 Ik~LqdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~L 634 (1460)
+.++..-.+..-|.+..|+.|+. +|..|+.++.++++++.+|
T Consensus 132 leD~e~kln~aiEr~alLE~El~----EKe~l~~~~QRLkdE~rDL 173 (189)
T 2v71_A 132 LEDFEQRLNQAIERNAFLESELD----EKESLLVSVQRLKDEARDL 173 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_conf 99999898899999998987898----8998999999989888988
No 7
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=1.00 E-value=1 Score=29.65 Aligned_cols=110 Identities=24% Similarity=0.333 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68999999999999899999998999989999987578888676887899989999999999999999956999888888
Q 000499 290 IAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAV 369 (1460)
Q Consensus 290 ~ae~E~~sLk~~l~~Lq~ekea~llqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKea~~ 369 (1460)
.|+.+-.-|+.-+.+++++...+--.+....+++-.|+.+...+++++..+-.++..|+.+...|...-..-.++++.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~-- 409 (575)
T 2i1j_A 332 RAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQK-- 409 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_conf 999848999999999999999999999986999999999999999999999987999999999999988867999999--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88989789778877644312674778779888889999999999
Q 000499 370 VKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQA 413 (1460)
Q Consensus 370 lqyqQcLe~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~ 413 (1460)
|+.++.-++..+.++.+..++-+.++..++..
T Consensus 410 ------------l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 441 (575)
T 2i1j_A 410 ------------LEDEIRAKQEEVSRIQQEVELKDSETRRLQEE 441 (575)
T ss_dssp --------------------------------------------
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------------99989998899999999998778889999999
No 8
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=1.00 E-value=1 Score=27.24 Aligned_cols=93 Identities=22% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99988876311124587677787749999998877788789784310040788977899999998959999987566542
Q 000499 784 LEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQ 863 (1460)
Q Consensus 784 lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~qeh~~~~k 863 (1460)
.+.....++..--.+..+++.|..++++++..+...+.+|+++..+..++..+....-.+|......
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~------------- 84 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLA------------- 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-------------
T ss_conf 9999999999999999989999999988999999988716999999999998887740012199979-------------
Q ss_pred CHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1098884067645567897566666359999
Q 000499 864 LSETRLAGMESQISFLQEEGLCRKKAYEEEL 894 (1460)
Q Consensus 864 ~se~~i~~lE~~is~LqEe~~~r~~~~eeE~ 894 (1460)
-.+||.+|-.|+++.-++++.|++|.
T Consensus 85 -----r~dLE~~iesL~eEl~FLKk~heeEl 110 (119)
T 3ol1_A 85 -----RLDLERKVESLQEEIAFLKKLHEEEI 110 (119)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----98899778889999999998799999
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=26.53 Aligned_cols=147 Identities=13% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999943789----999999999999999999999998979999999998874776535478987678773576688
Q 000499 407 VERLKQALGKLTE----EKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHS 482 (1460)
Q Consensus 407 v~~Lk~~i~~L~e----ekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~s 482 (1460)
.+.+...+..+.. ..+.+.....+....+..++.+....+..+..+..+++...+.+.....+ +......+..
T Consensus 433 ~~~~~~~~~~~~~~~~~~~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~---~~~~~~~l~~ 509 (597)
T 3oja_B 433 VQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDG---LARSSDNLNK 509 (597)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCS---SSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC---CCCHHHHHHH
T ss_conf 8888888898751015774999888988999999999999889999999999865555402766112---4787888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88999987222049899999999899999999999999998989898886210299999999999999999987
Q 000499 483 ELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKD 556 (1460)
Q Consensus 483 E~e~L~ekl~~~~qEL~eK~~Ei~~Lq~slqeE~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~ 556 (1460)
+...+.++.+....++...+++++..+...+....+..+.+..+.......-..+.|...+..++..+.+++++
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 510 VFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99998864323678888887765542011136776648899987310147899888899999999999987437
No 10
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=1.00 E-value=1 Score=25.73 Aligned_cols=98 Identities=22% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999867788898789889999979999889865311000674468999999999999899999998999989
Q 000499 239 ILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQ 318 (1460)
Q Consensus 239 I~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~v~~L~era~~ae~E~~sLk~~l~~Lq~ekea~llqykq 318 (1460)
++.+|+-+-.|+.++|...-.|+++-.++-..+..... ++.++.+|.-.+..++.+.|.+--++..
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~--------------~E~Ei~sL~kk~~~lE~eld~~ee~L~e 69 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQ--------------LEDDIVQLEKQLRVTEDSRDQVLEELHK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68999999999998988988999999999999999998--------------6789999998899889899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998757888867688789998999999999
Q 000499 319 CLDKLSNMEKNISRAEADAVELSDRASKAEIE 350 (1460)
Q Consensus 319 ClE~Is~LE~~~s~aqeeak~lneRa~~AE~E 350 (1460)
...++-.-+...+.|+-++..+|.|+.-.|.+
T Consensus 70 a~~kLee~ek~~~~aE~ev~~L~RriqllEEe 101 (101)
T 3u1c_A 70 SEDSLLFAEENAAKAESEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999887877789999999999998149
Done!