Query 000499
Match_columns 1460
No_of_seqs 150 out of 164
Neff 4.2
Searched_HMMs 13730
Date Tue Mar 26 17:17:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000499.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_272-275//hhsearch_scop/000499hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1z0pa1 a.2.18.1 (A:1-77) Hypo 9.3 31 0.0023 7.3 6.5 42 27-68 13-54 (77)
2 d2b3tb1 e.38.1.1 (B:7-354) Pep 5.4 64 0.0046 5.0 3.9 20 69-88 115-134 (344)
3 d1ykhb1 a.252.1.1 (B:2-130) RN 3.7 1E+02 0.0074 3.5 9.3 53 637-689 71-123 (129)
4 d1g8ea_ a.145.1.1 (A:) Flagell 3.2 1.2E+02 0.0089 3.0 3.3 31 64-94 2-35 (98)
5 d1wu9a1 a.245.1.1 (A:191-249) 3.0 1.3E+02 0.0096 2.7 5.8 29 761-789 11-39 (59)
6 d1uklc_ a.38.1.1 (C:) SREBP-2 2.9 1.4E+02 0.01 2.5 2.4 25 234-258 30-54 (61)
7 d1fc3a_ a.4.6.3 (A:) Spo0A {Ba 2.8 1.4E+02 0.01 2.4 3.3 69 34-104 4-77 (119)
8 d2htna1 a.25.1.1 (A:1-158) Bac 2.8 1.5E+02 0.011 2.4 0.5 11 79-89 37-47 (158)
9 d1hcia4 a.7.1.1 (A:633-746) al 2.3 1.8E+02 0.013 1.7 5.8 101 421-521 3-104 (114)
10 d2hoea3 c.55.1.10 (A:72-199) N 2.3 1.1E+02 0.008 3.3 -1.1 44 21-65 85-128 (128)
No 1
>d1z0pa1 a.2.18.1 (A:1-77) Hypothetical protein SPy1572 {Streptococcus pyogenes [TaxId: 1314]}
Probab=9.34 E-value=31 Score=7.28 Aligned_cols=42 Identities=17% Similarity=0.366 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHH
Q ss_conf 017733743799999999986210014999887842013588
Q 000499 27 KWLQENLTDMDVKVKQMIKLIEEDADSFARRAEMYYKKRPEL 68 (1460)
Q Consensus 27 kWL~~~l~dm~~~vk~mlkli~ed~dsfakrAemyykkRpeL 68 (1460)
-|...-++-.+.-|+.--++.++|+|--|+-|-.-|..|..-
T Consensus 13 ~Wv~~Qi~in~mAm~~s~kv~eeD~derA~dA~iRYEsklDA 54 (77)
T d1z0pa1 13 DWVKTQIQVNQLAMATSQEVAQEDGDERAKDAFIRYESKLDA 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999989999999999999999873217889899999976029
No 2
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]}
Probab=5.40 E-value=64 Score=5.01 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998535
Q 000499 69 MKLVEEFYRAYRALAERYDH 88 (1460)
Q Consensus 69 i~~vee~yr~yr~LAeRyd~ 88 (1460)
--+.++++|||.-.|++-+.
T Consensus 115 ~dwA~~L~rMY~r~ae~~g~ 134 (344)
T d2b3tb1 115 ALFAGDLFRMYSRYAEARRW 134 (344)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999987398
No 3
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.70 E-value=1e+02 Score=3.51 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999852088863035319999897354699997769879989998999
Q 000499 637 KHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEI 689 (1460)
Q Consensus 637 k~~~l~e~l~~l~~~~e~~~~~vkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~ 689 (1460)
....|++++-..+..++-...++++|+.+|...-.+......++..|+.+++.
T Consensus 71 qId~LI~sLP~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~ 123 (129)
T d1ykhb1 71 QINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 123 (129)
T ss_dssp HHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 49999985899999999999999999999999999999999999999999999
No 4
>d1g8ea_ a.145.1.1 (A:) Flagellar transcriptional activator FlhD {Escherichia coli [TaxId: 562]}
Probab=3.21 E-value=1.2e+02 Score=2.95 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q ss_conf 13588999999999999999985---35557887
Q 000499 64 KRPELMKLVEEFYRAYRALAERY---DHATGALR 94 (1460)
Q Consensus 64 kRpeLi~~vee~yr~yr~LAeRy---d~~~~el~ 94 (1460)
..++++..+.|++.+|--||.|. |..++-.|
T Consensus 2 ~~~~ll~eI~e~NLsYLlLAQrlir~Dka~A~fR 35 (98)
T d1g8ea_ 2 HTSELLKHIYDINLSYLLLAQRLIVQDKASAMFR 35 (98)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7468999999984999999999988749878766
No 5
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.00 E-value=1.3e+02 Score=2.70 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66555444239989889987787999888
Q 000499 761 NFLVNSLFDANAEVEGLRAKSKSLEDSCL 789 (1460)
Q Consensus 761 s~LE~slSd~n~ElE~lr~K~k~lEes~~ 789 (1460)
+.|..+.-++..|++---.|+.+.|..||
T Consensus 11 ~elk~~v~~lEkERdFYF~KLRdIEilcQ 39 (59)
T d1wu9a1 11 NVLKLTVEDLEKERDFYFGKLRNIELICQ 39 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999899999999999992
No 6
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.88 E-value=1.4e+02 Score=2.54 Aligned_cols=25 Identities=32% Similarity=0.097 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4399999999999999867788898
Q 000499 234 KAEMEILTLKNALAKLEAEKEAGLL 258 (1460)
Q Consensus 234 kAe~EI~~Lkk~i~~LqtEKE~~~~ 258 (1460)
+|-.=|..|++.+..|+.|......
T Consensus 30 ~Ai~YI~~Lq~~~~~L~~e~~~L~~ 54 (61)
T d1uklc_ 30 KAIDYIKYLQQVNHKLRQENMVLKL 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999
No 7
>d1fc3a_ a.4.6.3 (A:) Spo0A {Bacillus stearothermophilus [TaxId: 1422]}
Probab=2.79 E-value=1.4e+02 Score=2.42 Aligned_cols=69 Identities=19% Similarity=0.293 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHC----CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCC
Q ss_conf 43799999999986210----0149998878420135889999999999999999853555788763211-00138
Q 000499 34 TDMDVKVKQMIKLIEED----ADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATGALRQAHRT-MAEAF 104 (1460)
Q Consensus 34 ~dm~~~vk~mlkli~ed----~dsfakrAemyykkRpeLi~~vee~yr~yr~LAeRyd~~~~el~~~~~~-~~~~~ 104 (1460)
.+|+..|..+|.-++-. |=.|-+-|-+.--..|+++.-| ...-|...|+.|+-..+-...+-|+ |..++
T Consensus 4 ~~le~~i~~lL~~lGip~h~kGy~Yl~~AI~l~~~d~~~l~~i--tK~LYp~IA~ky~TT~s~VERaIRhaIevaW 77 (119)
T d1fc3a_ 4 KNLDASITSIIHEIGVPAHIKGYLYLREAIAMVYHDIELLGSI--TKVLYPDIAKKYNTTASRVERAIRHAIEVAW 77 (119)
T ss_dssp HHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHCGGGGGGT--TTTHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 2299999999999199942231999999999998788899858--9997999999959987999999999999999
No 8
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]}
Probab=2.76 E-value=1.5e+02 Score=2.37 Aligned_cols=11 Identities=18% Similarity=0.214 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999985355
Q 000499 79 YRALAERYDHA 89 (1460)
Q Consensus 79 yr~LAeRyd~~ 89 (1460)
+..+|+.+...
T Consensus 37 ~~~la~~f~~~ 47 (158)
T d2htna1 37 LKRLNDVEYHE 47 (158)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 79999999999
No 9
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.32 E-value=1.8e+02 Score=1.71 Aligned_cols=101 Identities=13% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999-99999897999999999887477653547898767877357668888999987222049899
Q 000499 421 KEALALQYQQCLEAISI-LEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELT 499 (1460)
Q Consensus 421 keal~l~~qq~~~kI~~-LE~elS~sQeEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qEL~ 499 (1460)
++.+.-+|.+-.+.+.. +...........-.-...++....+++.++......+.....+....+.|....-.....+.
T Consensus 3 ~~~L~~~F~~~a~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~ 82 (114)
T d1hcia4 3 NERLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTN 82 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 39999999999999999999999988706415715599999999999999998799999999999998772896378899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998999999999999999
Q 000499 500 EKQKELGRLWTCIQEERLRFVE 521 (1460)
Q Consensus 500 eK~~Ei~~Lq~slqeE~~k~~E 521 (1460)
.+..+|...|..+.....++..
T Consensus 83 ~~~~~L~~~W~~L~~~~~~R~~ 104 (114)
T d1hcia4 83 YTMEHIRVGWELLLTTIARTIN 104 (114)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999
No 10
>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=2.32 E-value=1.1e+02 Score=3.29 Aligned_cols=44 Identities=30% Similarity=0.363 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHH
Q ss_conf 898997017733743799999999986210014999887842013
Q 000499 21 ISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEMYYKKR 65 (1460)
Q Consensus 21 ~~~~~skWL~~~l~dm~~~vk~mlkli~ed~dsfakrAemyykkR 65 (1460)
+++.+.+|-+-.+.++-.+.=.+-..++.|+.. |--||.||-+|
T Consensus 85 ~~~~~l~w~~~~l~~~l~~~~~~pv~i~NDa~~-~alaE~~fG~~ 128 (128)
T d2hoea3 85 IDPRNFPLSQIPLANLLKEKYGIEVWVENDADM-GAVGEKWYTKR 128 (128)
T ss_dssp CCCSSCTTBTSCHHHHHHHHHCSEEEEEEHHHH-HHHHHHHHTTC
T ss_pred EEECCCCCCCCCHHHHHHHHCCCCEEEEEHHHH-HHHHHHHHCCC
T ss_conf 851222224886699999872998999848889-99999986689
Done!