Query 000500
Match_columns 1460
No_of_seqs 720 out of 4038
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 10:50:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000500.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000500hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0384 Chromodomain-helicase 100.0 6E-171 1E-175 1567.4 60.9 926 101-1120 184-1172(1373)
2 KOG0385 Chromatin remodeling c 100.0 7E-145 2E-149 1284.0 54.5 767 276-1133 158-958 (971)
3 PLN03142 Probable chromatin-re 100.0 1E-124 3E-129 1206.3 54.5 764 272-1132 157-985 (1033)
4 KOG0386 Chromatin remodeling c 100.0 3.2E-95 7E-100 882.6 30.9 506 272-810 381-906 (1157)
5 KOG0389 SNF2 family DNA-depend 100.0 1.1E-92 2.4E-97 843.9 40.8 463 274-760 387-912 (941)
6 KOG0391 SNF2 family DNA-depend 100.0 1.2E-91 2.6E-96 845.8 34.9 472 280-775 610-1428(1958)
7 KOG0383 Predicted helicase [Ge 100.0 6E-93 1.3E-97 869.1 19.6 622 46-690 42-696 (696)
8 KOG0388 SNF2 family DNA-depend 100.0 3E-90 6.6E-95 805.8 31.8 457 274-759 557-1177(1185)
9 KOG0387 Transcription-coupled 100.0 8.9E-88 1.9E-92 803.4 40.7 485 275-779 196-702 (923)
10 KOG0392 SNF2 family DNA-depend 100.0 2E-81 4.3E-86 769.3 39.7 465 284-775 974-1495(1549)
11 KOG0390 DNA repair protein, SN 100.0 7.8E-70 1.7E-74 670.4 43.4 453 284-760 237-731 (776)
12 KOG1015 Transcription regulato 100.0 8.5E-66 1.8E-70 614.3 33.5 470 284-779 667-1321(1567)
13 KOG1002 Nucleotide excision re 100.0 1.5E-65 3.3E-70 582.3 33.7 469 274-774 174-789 (791)
14 KOG4439 RNA polymerase II tran 100.0 3.9E-64 8.4E-69 592.3 34.2 473 273-774 314-899 (901)
15 COG0553 HepA Superfamily II DN 100.0 1.4E-63 3.1E-68 659.8 40.3 474 281-776 334-865 (866)
16 KOG1016 Predicted DNA helicase 100.0 4.3E-55 9.2E-60 513.9 25.4 483 284-777 253-891 (1387)
17 KOG1000 Chromatin remodeling p 100.0 4.2E-54 9.1E-59 491.2 30.6 409 285-756 198-623 (689)
18 PRK04914 ATP-dependent helicas 100.0 5.2E-52 1.1E-56 534.1 35.8 417 284-760 151-629 (956)
19 KOG1001 Helicase-like transcri 100.0 1.1E-47 2.4E-52 478.5 23.9 437 288-758 135-672 (674)
20 PF00176 SNF2_N: SNF2 family N 100.0 1.4E-40 3E-45 386.2 23.4 272 289-586 1-299 (299)
21 TIGR00603 rad25 DNA repair hel 100.0 1.5E-36 3.3E-41 379.7 36.0 342 283-747 253-618 (732)
22 PRK13766 Hef nuclease; Provisi 100.0 2.4E-32 5.2E-37 357.6 39.1 430 284-753 14-496 (773)
23 KOG0298 DEAD box-containing he 100.0 3.2E-30 7E-35 322.7 23.0 256 302-584 372-689 (1394)
24 COG1061 SSL2 DNA or RNA helica 100.0 7.6E-28 1.6E-32 294.3 31.8 362 283-748 34-406 (442)
25 COG1111 MPH1 ERCC4-like helica 100.0 1.2E-26 2.5E-31 271.1 37.1 421 284-754 14-499 (542)
26 PHA02558 uvsW UvsW helicase; P 100.0 7.9E-27 1.7E-31 290.4 33.1 340 283-737 112-456 (501)
27 PF06461 DUF1086: Domain of Un 100.0 1.3E-28 2.8E-33 245.5 13.1 133 936-1069 9-142 (145)
28 PF08074 CHDCT2: CHDCT2 (NUC03 99.9 1.6E-25 3.4E-30 225.5 8.5 144 1081-1333 3-146 (173)
29 PTZ00110 helicase; Provisional 99.9 4.3E-22 9.2E-27 250.0 32.7 319 284-736 151-484 (545)
30 TIGR00614 recQ_fam ATP-depende 99.9 6.6E-22 1.4E-26 245.0 29.9 308 284-730 10-329 (470)
31 PRK10590 ATP-dependent RNA hel 99.9 1.2E-21 2.7E-26 241.8 30.6 310 284-729 22-347 (456)
32 PRK11776 ATP-dependent RNA hel 99.9 2.8E-21 6E-26 239.2 33.4 313 284-736 25-349 (460)
33 PRK01297 ATP-dependent RNA hel 99.9 1.8E-21 3.9E-26 241.7 31.7 316 284-736 108-442 (475)
34 PLN00206 DEAD-box ATP-dependen 99.9 1.9E-21 4.2E-26 243.2 31.9 315 284-736 142-475 (518)
35 KOG0354 DEAD-box like helicase 99.9 1.8E-20 4E-25 231.2 36.9 409 284-734 61-527 (746)
36 PRK11192 ATP-dependent RNA hel 99.9 5.5E-21 1.2E-25 234.9 32.0 312 284-729 22-347 (434)
37 PRK04837 ATP-dependent RNA hel 99.9 2.2E-21 4.8E-26 237.5 28.3 313 285-735 30-361 (423)
38 PRK04537 ATP-dependent RNA hel 99.9 8.9E-21 1.9E-25 239.0 31.2 309 284-729 30-359 (572)
39 PRK11634 ATP-dependent RNA hel 99.9 2E-20 4.2E-25 237.3 34.3 310 284-729 27-347 (629)
40 PRK11057 ATP-dependent DNA hel 99.9 2.2E-20 4.7E-25 237.7 30.7 305 284-729 24-338 (607)
41 TIGR01389 recQ ATP-dependent D 99.9 2.2E-20 4.8E-25 237.8 30.5 304 284-728 12-325 (591)
42 KOG1123 RNA polymerase II tran 99.9 3.5E-21 7.7E-26 221.8 19.7 341 282-742 299-659 (776)
43 PTZ00424 helicase 45; Provisio 99.9 3.8E-20 8.3E-25 225.0 30.0 317 284-737 49-375 (401)
44 KOG0331 ATP-dependent RNA heli 99.9 1E-19 2.2E-24 219.0 28.6 313 285-729 113-443 (519)
45 PLN03137 ATP-dependent DNA hel 99.8 1.2E-19 2.5E-24 233.1 28.7 311 284-731 459-784 (1195)
46 PRK11448 hsdR type I restricti 99.8 1.9E-19 4.1E-24 238.4 29.5 357 283-733 411-815 (1123)
47 KOG0330 ATP-dependent RNA heli 99.8 1.8E-19 4E-24 204.0 24.3 323 285-747 83-416 (476)
48 PRK13767 ATP-dependent helicas 99.8 8.7E-19 1.9E-23 230.6 34.0 322 284-731 31-395 (876)
49 TIGR00643 recG ATP-dependent D 99.8 8.1E-19 1.8E-23 224.2 32.5 305 284-728 234-560 (630)
50 PRK10917 ATP-dependent DNA hel 99.8 1.4E-18 3.1E-23 223.4 32.8 305 284-728 260-583 (681)
51 TIGR03817 DECH_helic helicase/ 99.8 1.5E-18 3.3E-23 224.2 31.8 331 285-744 36-394 (742)
52 TIGR00580 mfd transcription-re 99.8 1E-18 2.2E-23 228.0 30.2 309 284-736 450-770 (926)
53 PRK10689 transcription-repair 99.8 1.6E-18 3.5E-23 230.5 28.6 303 284-728 599-913 (1147)
54 COG0513 SrmB Superfamily II DN 99.8 9.1E-18 2E-22 209.3 30.6 328 284-749 50-392 (513)
55 PRK02362 ski2-like helicase; P 99.8 3.4E-17 7.5E-22 213.3 27.2 317 284-735 22-396 (737)
56 TIGR01587 cas3_core CRISPR-ass 99.8 8E-17 1.7E-21 193.1 27.8 328 307-750 2-355 (358)
57 PRK00254 ski2-like helicase; P 99.8 1.4E-16 3E-21 207.1 28.7 317 284-737 22-389 (720)
58 PRK01172 ski2-like helicase; P 99.7 9.7E-17 2.1E-21 207.5 27.0 304 284-728 21-370 (674)
59 TIGR00348 hsdR type I site-spe 99.7 4.7E-16 1E-20 199.5 29.6 362 284-734 237-649 (667)
60 TIGR02621 cas3_GSU0051 CRISPR- 99.7 3.1E-16 6.7E-21 199.7 25.4 107 621-732 269-390 (844)
61 TIGR03714 secA2 accessory Sec 99.7 4.6E-16 9.9E-21 196.4 26.5 117 606-728 406-531 (762)
62 COG1201 Lhr Lhr-like helicases 99.7 1.1E-15 2.3E-20 193.8 28.7 328 284-748 21-372 (814)
63 KOG0350 DEAD-box ATP-dependent 99.7 4.9E-16 1.1E-20 180.9 21.1 357 285-736 159-540 (620)
64 PRK09200 preprotein translocas 99.7 4.8E-15 1E-19 188.9 29.9 131 605-745 409-547 (790)
65 KOG0328 Predicted ATP-dependen 99.7 1.1E-15 2.3E-20 167.0 19.7 312 288-737 52-374 (400)
66 TIGR00963 secA preprotein tran 99.7 3.5E-16 7.6E-21 196.2 17.9 119 606-729 387-512 (745)
67 PHA02653 RNA helicase NPH-II; 99.7 8.6E-15 1.9E-19 185.7 29.4 324 281-738 156-516 (675)
68 COG0514 RecQ Superfamily II DN 99.7 4.8E-15 1E-19 182.0 25.5 306 284-730 16-333 (590)
69 PRK12898 secA preprotein trans 99.7 6.2E-15 1.3E-19 184.3 25.9 131 605-745 454-592 (656)
70 PRK09751 putative ATP-dependen 99.7 9.1E-15 2E-19 195.9 28.5 96 623-721 243-371 (1490)
71 COG4096 HsdR Type I site-speci 99.7 4.4E-15 9.5E-20 183.3 23.1 354 282-733 162-545 (875)
72 KOG0345 ATP-dependent RNA heli 99.7 1.7E-14 3.8E-19 167.3 26.4 317 284-733 27-363 (567)
73 TIGR03158 cas3_cyano CRISPR-as 99.6 5.1E-14 1.1E-18 168.8 27.9 85 623-719 271-357 (357)
74 COG1200 RecG RecG-like helicas 99.6 2.9E-14 6.2E-19 174.6 25.5 305 284-727 261-584 (677)
75 KOG0335 ATP-dependent RNA heli 99.6 1.8E-14 3.8E-19 171.5 23.0 313 284-731 95-441 (482)
76 KOG0333 U5 snRNP-like RNA heli 99.6 1.4E-14 3.1E-19 169.5 21.2 339 285-736 267-624 (673)
77 KOG0342 ATP-dependent RNA heli 99.6 1.2E-14 2.7E-19 169.8 19.4 308 284-726 103-429 (543)
78 KOG0341 DEAD-box protein abstr 99.6 4.1E-15 8.9E-20 167.8 14.9 320 285-743 192-535 (610)
79 cd00079 HELICc Helicase superf 99.6 2.7E-15 5.9E-20 152.3 11.8 120 608-730 12-131 (131)
80 COG4889 Predicted helicase [Ge 99.6 2.3E-14 4.9E-19 174.1 20.6 400 283-733 159-585 (1518)
81 PRK09401 reverse gyrase; Revie 99.6 1E-13 2.2E-18 185.5 28.7 293 283-721 78-431 (1176)
82 PRK05580 primosome assembly pr 99.6 4E-13 8.6E-18 172.9 32.6 153 284-466 143-304 (679)
83 KOG0348 ATP-dependent RNA heli 99.6 1.5E-13 3.2E-18 161.3 24.8 122 606-730 403-550 (708)
84 PF04851 ResIII: Type III rest 99.6 7.2E-15 1.6E-19 158.0 13.0 165 284-467 2-183 (184)
85 COG1205 Distinct helicase fami 99.6 1.3E-13 2.7E-18 179.6 26.6 332 285-747 70-433 (851)
86 KOG0343 RNA Helicase [RNA proc 99.6 1.6E-13 3.4E-18 161.4 24.3 325 285-750 91-435 (758)
87 KOG0338 ATP-dependent RNA heli 99.6 8.7E-14 1.9E-18 162.3 20.9 321 286-745 204-540 (691)
88 KOG0339 ATP-dependent RNA heli 99.6 1.9E-13 4.1E-18 159.2 23.4 317 286-739 246-578 (731)
89 KOG0340 ATP-dependent RNA heli 99.6 4.4E-13 9.5E-18 151.3 23.6 306 285-725 29-352 (442)
90 TIGR00595 priA primosomal prot 99.5 8E-13 1.7E-17 164.5 27.4 94 637-733 271-380 (505)
91 PRK13104 secA preprotein trans 99.5 9.4E-13 2E-17 167.7 27.3 131 605-745 425-593 (896)
92 KOG4284 DEAD box protein [Tran 99.5 2.9E-13 6.3E-18 161.1 19.8 311 286-725 48-370 (980)
93 PRK09694 helicase Cas3; Provis 99.5 2E-12 4.4E-17 167.9 28.0 357 283-724 284-665 (878)
94 TIGR01054 rgy reverse gyrase. 99.5 1.8E-12 4E-17 173.8 27.4 313 284-705 77-408 (1171)
95 PRK12904 preprotein translocas 99.5 3E-12 6.5E-17 163.1 26.2 130 606-745 412-579 (830)
96 KOG0336 ATP-dependent RNA heli 99.5 2.1E-12 4.6E-17 147.1 21.7 313 285-736 242-572 (629)
97 PRK12906 secA preprotein trans 99.5 1.9E-12 4.1E-17 164.3 23.5 118 606-728 422-547 (796)
98 PRK14701 reverse gyrase; Provi 99.5 4.3E-12 9.3E-17 173.5 28.2 336 284-724 78-446 (1638)
99 KOG0332 ATP-dependent RNA heli 99.5 2.2E-12 4.8E-17 146.3 20.4 333 267-738 88-446 (477)
100 TIGR01970 DEAH_box_HrpB ATP-de 99.5 4E-12 8.6E-17 165.2 25.8 108 624-737 209-337 (819)
101 COG1204 Superfamily II helicas 99.5 5.1E-12 1.1E-16 162.7 25.6 310 285-725 31-397 (766)
102 COG4098 comFA Superfamily II D 99.5 7.3E-11 1.6E-15 133.2 30.8 312 280-732 92-414 (441)
103 KOG0347 RNA helicase [RNA proc 99.5 2.3E-12 5.1E-17 151.8 19.5 361 284-757 200-612 (731)
104 COG1197 Mfd Transcription-repa 99.4 1.8E-11 3.9E-16 157.8 29.0 351 284-786 593-957 (1139)
105 KOG0326 ATP-dependent RNA heli 99.4 2.9E-13 6.4E-18 150.3 10.9 287 304-724 122-419 (459)
106 PF00271 Helicase_C: Helicase 99.4 1.9E-13 4.2E-18 127.3 7.6 78 642-722 1-78 (78)
107 PRK13107 preprotein translocas 99.4 1.1E-11 2.3E-16 157.8 25.4 130 606-745 431-597 (908)
108 smart00487 DEXDc DEAD-like hel 99.4 3.1E-12 6.7E-17 137.9 16.0 156 283-468 6-172 (201)
109 PRK11664 ATP-dependent RNA hel 99.4 2.1E-11 4.5E-16 158.9 24.0 110 623-738 211-341 (812)
110 COG1202 Superfamily II helicas 99.4 1.7E-11 3.6E-16 145.2 20.3 315 284-736 215-553 (830)
111 KOG0346 RNA helicase [RNA proc 99.4 3.4E-11 7.3E-16 139.2 22.1 118 608-729 253-405 (569)
112 TIGR00631 uvrb excinuclease AB 99.4 2.4E-10 5.2E-15 145.9 31.5 132 607-744 425-563 (655)
113 cd00046 DEXDc DEAD-like helica 99.4 5.9E-12 1.3E-16 127.7 13.2 136 305-466 1-144 (144)
114 KOG0334 RNA helicase [RNA proc 99.3 2.2E-11 4.7E-16 154.3 19.7 123 607-735 597-719 (997)
115 PRK12900 secA preprotein trans 99.3 1E-10 2.2E-15 149.5 24.8 118 606-728 580-705 (1025)
116 KOG0351 ATP-dependent DNA heli 99.3 2.8E-11 6.1E-16 156.9 20.1 314 284-733 263-591 (941)
117 KOG0344 ATP-dependent RNA heli 99.3 3E-11 6.5E-16 145.0 18.6 122 607-735 372-494 (593)
118 PRK05298 excinuclease ABC subu 99.3 1.3E-09 2.8E-14 140.1 34.4 124 607-736 429-557 (652)
119 PF09111 SLIDE: SLIDE; InterP 99.3 9E-14 2E-18 138.6 -3.5 98 1024-1130 1-109 (118)
120 smart00490 HELICc helicase sup 99.3 6.7E-12 1.5E-16 116.6 8.8 81 639-722 2-82 (82)
121 PF11496 HDA2-3: Class II hist 99.3 4.8E-11 1E-15 138.4 16.2 216 532-749 4-258 (297)
122 PRK12899 secA preprotein trans 99.2 1.5E-09 3.2E-14 138.7 28.3 131 605-745 549-687 (970)
123 KOG0952 DNA/RNA helicase MER3/ 99.2 6.8E-10 1.5E-14 139.7 23.6 310 299-740 121-495 (1230)
124 COG1203 CRISPR-associated heli 99.2 5.7E-10 1.2E-14 145.2 23.5 356 284-752 194-568 (733)
125 TIGR01967 DEAH_box_HrpA ATP-de 99.2 6.1E-10 1.3E-14 148.4 23.3 110 623-740 278-408 (1283)
126 PRK12326 preprotein translocas 99.2 1.8E-09 3.9E-14 134.9 25.8 120 606-730 409-543 (764)
127 PRK11131 ATP-dependent RNA hel 99.2 1.3E-09 2.8E-14 144.8 24.2 109 623-739 285-414 (1294)
128 cd00268 DEADc DEAD-box helicas 99.1 9.6E-10 2.1E-14 121.2 15.7 153 285-467 21-185 (203)
129 KOG0327 Translation initiation 99.1 1.3E-09 2.9E-14 125.5 17.2 301 302-737 61-371 (397)
130 PF00270 DEAD: DEAD/DEAH box h 99.1 7.3E-10 1.6E-14 117.9 13.5 155 288-472 2-167 (169)
131 PRK13103 secA preprotein trans 99.1 7E-09 1.5E-13 132.6 24.2 121 605-730 430-587 (913)
132 KOG0337 ATP-dependent RNA heli 99.1 4.3E-10 9.4E-15 129.8 11.6 313 285-736 43-368 (529)
133 TIGR01407 dinG_rel DnaQ family 99.1 4.5E-09 9.7E-14 139.5 21.9 86 282-368 242-333 (850)
134 KOG0352 ATP-dependent DNA heli 99.0 1.6E-08 3.5E-13 116.7 21.4 321 288-731 23-359 (641)
135 COG0556 UvrB Helicase subunit 99.0 2.3E-07 4.9E-12 110.8 31.0 128 617-748 439-571 (663)
136 PRK12903 secA preprotein trans 99.0 4.7E-08 1E-12 124.0 26.5 130 606-745 408-545 (925)
137 KOG0353 ATP-dependent DNA heli 99.0 9.1E-09 2E-13 116.6 18.0 297 284-714 93-404 (695)
138 KOG0951 RNA helicase BRR2, DEA 98.9 4.3E-08 9.2E-13 125.1 21.2 72 648-723 607-689 (1674)
139 KOG1244 Predicted transcriptio 98.8 7.5E-10 1.6E-14 120.4 0.7 62 39-100 269-333 (336)
140 PF13872 AAA_34: P-loop contai 98.8 4E-08 8.7E-13 112.5 13.8 238 276-550 27-302 (303)
141 TIGR00596 rad1 DNA repair prot 98.7 4.2E-07 9.2E-12 118.0 21.0 42 605-646 267-317 (814)
142 CHL00122 secA preprotein trans 98.7 1E-06 2.2E-11 112.8 22.3 84 606-693 406-490 (870)
143 KOG0947 Cytoplasmic exosomal R 98.6 3.7E-07 7.9E-12 114.4 15.9 147 278-466 290-444 (1248)
144 COG0610 Type I site-specific r 98.6 7.2E-07 1.6E-11 118.9 19.6 139 303-470 272-417 (962)
145 COG4581 Superfamily II RNA hel 98.6 1.3E-06 2.8E-11 113.8 21.0 157 282-498 116-282 (1041)
146 PRK12901 secA preprotein trans 98.6 3E-06 6.6E-11 109.3 24.0 121 605-730 609-737 (1112)
147 PF06465 DUF1087: Domain of Un 98.6 5.5E-08 1.2E-12 86.0 5.6 44 862-905 20-63 (66)
148 COG1110 Reverse gyrase [DNA re 98.6 3.2E-06 7E-11 107.6 23.3 127 284-440 81-215 (1187)
149 COG1198 PriA Primosomal protei 98.6 4.7E-06 1E-10 106.6 25.1 373 284-736 197-605 (730)
150 PRK12902 secA preprotein trans 98.6 3.2E-06 6.9E-11 108.2 23.3 85 606-694 421-506 (939)
151 TIGR00604 rad3 DNA repair heli 98.6 1.6E-06 3.5E-11 113.3 20.9 75 280-354 5-82 (705)
152 PF00385 Chromo: Chromo (CHRro 98.6 2.1E-08 4.6E-13 87.4 2.1 49 193-241 2-54 (55)
153 KOG4299 PHD Zn-finger protein 98.5 2.4E-08 5.3E-13 121.1 1.6 48 51-98 253-305 (613)
154 PRK07246 bifunctional ATP-depe 98.5 3.7E-06 8E-11 110.9 20.1 89 612-706 635-725 (820)
155 COG1199 DinG Rad3-related DNA 98.5 1.2E-05 2.5E-10 104.8 24.5 104 621-729 476-612 (654)
156 PRK08074 bifunctional ATP-depe 98.4 3E-05 6.5E-10 104.2 27.0 90 280-369 252-347 (928)
157 KOG0948 Nuclear exosomal RNA h 98.4 1.4E-06 3E-11 107.0 12.5 152 284-498 128-288 (1041)
158 KOG1513 Nuclear helicase MOP-3 98.4 3.7E-05 8.1E-10 94.9 24.3 243 276-554 256-540 (1300)
159 KOG0329 ATP-dependent RNA heli 98.3 1.5E-05 3.2E-10 87.5 15.8 45 681-725 302-346 (387)
160 TIGR03117 cas_csf4 CRISPR-asso 98.3 0.00012 2.6E-09 93.3 26.4 79 290-368 2-87 (636)
161 PRK15483 type III restriction- 98.3 1E-05 2.2E-10 105.5 15.6 143 305-467 60-239 (986)
162 PF02399 Herpes_ori_bp: Origin 98.2 6.5E-05 1.4E-09 95.7 21.6 114 607-731 266-385 (824)
163 KOG0949 Predicted helicase, DE 98.2 0.00021 4.5E-09 90.8 25.4 161 286-479 512-682 (1330)
164 cd00024 CHROMO Chromatin organ 98.1 1.3E-06 2.8E-11 75.9 2.8 49 193-241 4-54 (55)
165 KOG0825 PHD Zn-finger protein 98.1 8.5E-07 1.8E-11 108.2 2.1 47 51-97 215-265 (1134)
166 PRK11747 dinG ATP-dependent DN 98.1 0.00038 8.3E-09 90.9 26.4 91 612-706 522-616 (697)
167 KOG0920 ATP-dependent RNA heli 98.0 0.00046 9.9E-09 89.9 22.8 129 608-742 395-550 (924)
168 PF00628 PHD: PHD-finger; Int 98.0 2E-06 4.3E-11 73.8 0.8 44 53-96 1-49 (51)
169 KOG0922 DEAH-box RNA helicase 98.0 0.00055 1.2E-08 85.0 21.9 110 626-738 260-392 (674)
170 COG0653 SecA Preprotein transl 98.0 0.00079 1.7E-08 86.7 23.9 113 605-722 410-533 (822)
171 smart00488 DEXDc2 DEAD-like he 97.9 6.1E-05 1.3E-09 88.2 12.6 72 284-355 7-84 (289)
172 smart00489 DEXDc3 DEAD-like he 97.9 6.1E-05 1.3E-09 88.2 12.6 72 284-355 7-84 (289)
173 smart00298 CHROMO Chromatin or 97.9 5.6E-06 1.2E-10 71.8 2.5 48 194-241 4-52 (55)
174 KOG0924 mRNA splicing factor A 97.9 0.00028 6E-09 86.6 17.2 94 648-744 597-705 (1042)
175 PF07652 Flavi_DEAD: Flaviviru 97.9 7.6E-05 1.7E-09 77.3 10.6 130 302-466 2-136 (148)
176 PF13871 Helicase_C_4: Helicas 97.8 3.2E-05 6.9E-10 88.8 7.3 90 665-757 52-149 (278)
177 KOG0349 Putative DEAD-box RNA 97.8 5.1E-05 1.1E-09 88.4 8.6 95 624-721 505-602 (725)
178 KOG0950 DNA polymerase theta/e 97.8 0.00024 5.1E-09 90.8 15.1 154 285-470 223-391 (1008)
179 TIGR02562 cas3_yersinia CRISPR 97.8 0.011 2.3E-07 78.1 30.2 189 287-475 410-643 (1110)
180 smart00249 PHD PHD zinc finger 97.8 1.8E-05 4E-10 65.8 3.0 43 53-95 1-47 (47)
181 COG1643 HrpA HrpA-like helicas 97.7 0.0018 3.8E-08 84.7 20.6 113 624-739 259-390 (845)
182 PF00385 Chromo: Chromo (CHRro 97.7 6E-06 1.3E-10 71.9 -1.4 54 101-173 2-55 (55)
183 KOG0957 PHD finger protein [Ge 97.6 2.1E-05 4.5E-10 92.5 1.8 51 45-95 538-595 (707)
184 KOG1512 PHD Zn-finger protein 97.6 2.6E-05 5.6E-10 86.2 1.9 56 39-96 302-361 (381)
185 KOG0953 Mitochondrial RNA heli 97.6 0.00019 4.1E-09 86.7 8.6 100 622-725 356-465 (700)
186 cd04718 BAH_plant_2 BAH, or Br 97.5 4.1E-05 8.9E-10 79.1 2.6 28 72-99 1-28 (148)
187 cd00024 CHROMO Chromatin organ 97.5 3.4E-05 7.3E-10 67.0 0.9 51 101-172 4-54 (55)
188 COG5034 TNG2 Chromatin remodel 97.5 5.5E-05 1.2E-09 83.3 2.4 47 48-97 218-269 (271)
189 KOG0923 mRNA splicing factor A 97.4 0.0045 9.8E-08 76.4 18.2 86 648-741 506-611 (902)
190 PF13086 AAA_11: AAA domain; P 97.4 0.00082 1.8E-08 75.0 11.5 66 285-354 1-75 (236)
191 KOG1973 Chromatin remodeling p 97.3 9E-05 1.9E-09 85.9 2.0 45 51-97 219-267 (274)
192 KOG4443 Putative transcription 97.1 0.00021 4.5E-09 87.8 2.4 51 46-96 63-116 (694)
193 KOG0955 PHD finger protein BR1 97.1 0.0003 6.5E-09 92.5 4.0 64 49-117 217-285 (1051)
194 COG5141 PHD zinc finger-contai 97.1 0.00024 5.1E-09 83.8 2.2 72 41-117 183-259 (669)
195 PF07517 SecA_DEAD: SecA DEAD- 97.0 0.0061 1.3E-07 70.3 13.2 122 283-440 75-209 (266)
196 KOG0954 PHD finger protein [Ge 97.0 0.00032 7E-09 86.5 2.3 90 49-158 269-364 (893)
197 KOG1473 Nucleosome remodeling 97.0 0.00032 7E-09 89.8 2.3 47 51-97 344-390 (1414)
198 KOG2748 Uncharacterized conser 96.9 0.00017 3.8E-09 82.5 -1.0 25 131-155 26-50 (369)
199 KOG0926 DEAH-box RNA helicase 96.8 0.004 8.6E-08 78.2 8.9 66 667-735 620-703 (1172)
200 KOG1245 Chromatin remodeling c 96.7 0.00035 7.6E-09 95.5 -0.2 52 48-99 1105-1159(1404)
201 COG3587 Restriction endonuclea 96.7 0.0074 1.6E-07 76.8 11.1 45 678-722 484-528 (985)
202 KOG0956 PHD finger protein AF1 96.7 0.00058 1.3E-08 83.6 1.2 83 54-154 8-98 (900)
203 smart00298 CHROMO Chromatin or 96.6 0.00089 1.9E-08 57.9 1.5 36 131-173 18-53 (55)
204 KOG0925 mRNA splicing factor A 96.6 0.056 1.2E-06 65.1 16.4 62 679-742 315-393 (699)
205 KOG4150 Predicted ATP-dependen 96.4 0.01 2.2E-07 71.9 9.0 134 605-743 506-647 (1034)
206 PF02562 PhoH: PhoH-like prote 96.4 0.028 6.1E-07 62.5 11.8 149 286-471 5-160 (205)
207 PRK10536 hypothetical protein; 96.4 0.028 6E-07 64.4 11.8 151 286-471 60-217 (262)
208 KOG4323 Polycomb-like PHD Zn-f 96.1 0.0018 3.9E-08 78.3 0.9 50 53-102 170-228 (464)
209 KOG1911 Heterochromatin-associ 96.1 0.0058 1.3E-07 71.0 4.7 58 189-246 46-103 (270)
210 COG0553 HepA Superfamily II DN 96.0 0.0034 7.4E-08 84.4 2.5 179 285-488 84-289 (866)
211 PF13401 AAA_22: AAA domain; P 96.0 0.0075 1.6E-07 61.5 4.4 35 430-466 89-125 (131)
212 KOG1131 RNA polymerase II tran 95.9 0.015 3.2E-07 70.3 7.1 67 276-342 7-75 (755)
213 PF13307 Helicase_C_2: Helicas 95.7 0.017 3.8E-07 62.2 6.3 81 621-706 6-92 (167)
214 PRK14873 primosome assembly pr 95.7 0.052 1.1E-06 70.5 11.3 125 313-466 169-303 (665)
215 KOG1802 RNA helicase nonsense 95.6 0.018 3.9E-07 71.4 6.3 77 284-366 409-486 (935)
216 PF09848 DUF2075: Uncharacteri 95.4 0.048 1E-06 65.9 9.0 45 307-351 4-49 (352)
217 KOG2748 Uncharacterized conser 95.1 0.017 3.7E-07 66.7 3.7 50 192-242 11-60 (369)
218 PF13604 AAA_30: AAA domain; P 95.0 0.19 4.1E-06 55.7 11.6 58 285-345 1-58 (196)
219 TIGR00376 DNA helicase, putati 94.4 0.16 3.4E-06 66.2 10.5 76 284-365 156-232 (637)
220 cd00009 AAA The AAA+ (ATPases 93.8 0.45 9.9E-06 48.2 10.5 41 304-345 19-59 (151)
221 TIGR01448 recD_rel helicase, p 93.6 0.42 9E-06 63.2 12.3 65 283-351 321-386 (720)
222 PF13831 PHD_2: PHD-finger; PD 93.6 0.015 3.3E-07 46.3 -0.7 33 62-96 3-36 (36)
223 PF12340 DUF3638: Protein of u 93.4 0.17 3.8E-06 57.0 7.1 74 282-356 20-93 (229)
224 KOG1132 Helicase of the DEAD s 93.4 0.55 1.2E-05 60.9 12.1 86 278-364 15-142 (945)
225 KOG1803 DNA helicase [Replicat 93.4 0.11 2.3E-06 64.8 5.7 64 284-351 184-248 (649)
226 KOG1805 DNA replication helica 93.3 1.4 2.9E-05 58.0 15.3 162 285-469 669-832 (1100)
227 PLN03025 replication factor C 93.2 0.76 1.6E-05 54.9 12.6 41 291-331 19-61 (319)
228 PRK04296 thymidine kinase; Pro 92.7 0.37 8E-06 53.2 8.3 34 307-341 5-38 (190)
229 PRK07003 DNA polymerase III su 92.5 3.8 8.3E-05 53.7 17.8 42 290-331 21-65 (830)
230 PF00249 Myb_DNA-binding: Myb- 92.3 0.12 2.6E-06 43.8 2.9 28 1082-1109 2-29 (48)
231 COG3421 Uncharacterized protei 92.1 0.35 7.7E-06 60.0 7.7 38 310-347 3-41 (812)
232 TIGR02881 spore_V_K stage V sp 92.0 0.55 1.2E-05 54.4 8.9 27 305-331 43-69 (261)
233 TIGR01447 recD exodeoxyribonuc 91.9 0.64 1.4E-05 59.9 10.1 54 288-345 148-205 (586)
234 KOG0951 RNA helicase BRR2, DEA 91.7 0.45 9.8E-06 63.4 8.3 111 300-445 1155-1270(1674)
235 PRK12402 replication factor C 91.4 0.77 1.7E-05 54.8 9.7 40 293-332 23-64 (337)
236 PRK06526 transposase; Provisio 91.4 0.84 1.8E-05 52.8 9.6 53 292-353 90-142 (254)
237 KOG0383 Predicted helicase [Ge 91.2 0.086 1.9E-06 67.7 1.4 71 50-152 176-246 (696)
238 PRK09112 DNA polymerase III su 90.9 0.85 1.8E-05 55.2 9.3 42 290-331 28-72 (351)
239 KOG1133 Helicase of the DEAD s 90.8 14 0.0003 47.5 19.4 81 626-707 631-721 (821)
240 PRK10875 recD exonuclease V su 90.8 0.59 1.3E-05 60.4 8.2 56 286-345 153-211 (615)
241 smart00717 SANT SANT SWI3, AD 90.7 0.26 5.5E-06 40.8 3.3 29 1082-1110 2-30 (49)
242 smart00492 HELICc3 helicase su 90.6 1.3 2.9E-05 46.5 9.2 52 652-706 26-79 (141)
243 PRK14956 DNA polymerase III su 90.5 1 2.2E-05 56.3 9.6 42 290-331 23-67 (484)
244 KOG4443 Putative transcription 90.5 0.091 2E-06 65.5 0.5 59 50-108 17-86 (694)
245 cd00167 SANT 'SWI3, ADA2, N-Co 90.4 0.25 5.5E-06 40.2 3.0 29 1083-1111 1-29 (45)
246 smart00382 AAA ATPases associa 89.9 0.75 1.6E-05 46.0 6.7 44 304-348 2-45 (148)
247 PRK07764 DNA polymerase III su 89.8 12 0.00026 50.3 19.3 25 307-331 40-64 (824)
248 PRK12723 flagellar biosynthesi 89.8 2.5 5.3E-05 51.9 12.0 56 428-483 254-314 (388)
249 KOG4299 PHD Zn-finger protein 89.7 0.18 3.9E-06 62.9 2.2 47 51-97 47-94 (613)
250 smart00491 HELICc2 helicase su 89.0 1.5 3.3E-05 46.1 8.2 54 652-706 23-80 (142)
251 PRK08181 transposase; Validate 88.9 3.3 7.1E-05 48.4 11.6 47 286-332 88-134 (269)
252 TIGR03420 DnaA_homol_Hda DnaA 88.5 2.1 4.5E-05 48.0 9.5 43 303-347 37-79 (226)
253 PRK12323 DNA polymerase III su 88.4 2.2 4.7E-05 55.1 10.4 25 306-330 40-64 (700)
254 PRK05703 flhF flagellar biosyn 88.1 4.1 8.8E-05 50.7 12.5 56 428-483 299-359 (424)
255 PRK14960 DNA polymerase III su 87.8 13 0.00028 48.3 16.7 37 294-330 24-63 (702)
256 TIGR03015 pepcterm_ATPase puta 87.7 2.4 5.2E-05 48.9 9.7 43 287-329 25-68 (269)
257 PF06862 DUF1253: Protein of u 87.5 6.1 0.00013 49.1 13.2 126 608-735 281-414 (442)
258 TIGR02880 cbbX_cfxQ probable R 87.2 0.86 1.9E-05 53.6 5.6 37 304-340 58-97 (284)
259 PRK00440 rfc replication facto 87.1 5.4 0.00012 47.1 12.4 26 306-331 40-65 (319)
260 PHA02533 17 large terminase pr 87.0 3.4 7.4E-05 52.8 11.1 55 284-342 58-113 (534)
261 PRK14949 DNA polymerase III su 87.0 3.3 7.1E-05 55.2 11.0 42 290-331 21-65 (944)
262 PRK07994 DNA polymerase III su 86.8 3.5 7.7E-05 53.6 11.2 42 290-331 21-65 (647)
263 COG1875 NYN ribonuclease and A 86.8 2.1 4.7E-05 51.0 8.3 55 271-327 213-268 (436)
264 PF15446 zf-PHD-like: PHD/FYVE 86.5 0.48 1E-05 50.2 2.6 34 63-96 124-175 (175)
265 CHL00181 cbbX CbbX; Provisiona 86.3 1.1 2.4E-05 52.7 5.9 29 304-332 59-87 (287)
266 PF00249 Myb_DNA-binding: Myb- 86.2 1.3 2.9E-05 37.4 4.8 42 969-1012 4-46 (48)
267 PF05876 Terminase_GpA: Phage 86.0 0.9 2E-05 58.3 5.3 166 284-476 15-189 (557)
268 PRK08691 DNA polymerase III su 85.8 7.1 0.00015 51.0 13.0 42 290-331 21-65 (709)
269 cd00167 SANT 'SWI3, ADA2, N-Co 85.6 1.8 3.9E-05 35.1 5.2 42 969-1012 2-43 (45)
270 KOG0457 Histone acetyltransfer 85.3 0.6 1.3E-05 56.2 3.0 48 1081-1128 72-119 (438)
271 PRK06645 DNA polymerase III su 84.7 3.4 7.4E-05 52.4 9.4 42 290-331 26-70 (507)
272 PRK14961 DNA polymerase III su 84.7 4.1 8.9E-05 49.6 9.9 42 289-330 20-64 (363)
273 PRK07940 DNA polymerase III su 84.5 3.6 7.8E-05 50.7 9.3 42 290-331 10-63 (394)
274 PRK14974 cell division protein 84.3 5.7 0.00012 47.8 10.6 46 306-352 142-191 (336)
275 PRK08084 DNA replication initi 84.2 5.1 0.00011 45.7 9.8 28 304-331 45-72 (235)
276 KOG0989 Replication factor C, 83.8 5.5 0.00012 46.7 9.6 43 289-331 40-84 (346)
277 PRK08116 hypothetical protein; 83.7 8.3 0.00018 45.0 11.4 42 304-346 114-155 (268)
278 PHA02544 44 clamp loader, smal 83.7 6 0.00013 46.9 10.6 39 429-467 101-141 (316)
279 smart00717 SANT SANT SWI3, AD 83.7 2.1 4.5E-05 35.2 4.8 45 968-1014 3-47 (49)
280 PRK08727 hypothetical protein; 82.9 8 0.00017 44.1 10.7 27 306-332 43-69 (233)
281 PRK09111 DNA polymerase III su 82.8 4.7 0.0001 52.2 9.7 42 290-331 29-73 (598)
282 PRK14958 DNA polymerase III su 82.6 7.6 0.00016 49.5 11.3 42 290-331 21-65 (509)
283 PF15446 zf-PHD-like: PHD/FYVE 82.5 0.59 1.3E-05 49.6 1.2 47 53-99 1-61 (175)
284 PRK14957 DNA polymerase III su 82.3 5.7 0.00012 50.9 10.0 40 291-330 22-64 (546)
285 PRK05707 DNA polymerase III su 82.1 3.9 8.4E-05 49.2 8.0 47 285-331 3-49 (328)
286 PRK11889 flhF flagellar biosyn 81.9 9.9 0.00021 46.6 11.2 36 305-341 242-277 (436)
287 PRK08451 DNA polymerase III su 81.4 5.6 0.00012 50.8 9.4 42 290-331 19-63 (535)
288 PF13173 AAA_14: AAA domain 81.3 7.2 0.00016 39.9 8.7 26 304-329 2-27 (128)
289 KOG0957 PHD finger protein [Ge 81.2 1.4 3.1E-05 53.3 3.8 65 49-117 117-194 (707)
290 PRK07471 DNA polymerase III su 81.0 7.6 0.00016 47.4 10.1 43 290-332 24-69 (365)
291 PRK14962 DNA polymerase III su 80.5 5.9 0.00013 50.0 9.2 24 307-330 39-62 (472)
292 PRK08769 DNA polymerase III su 80.5 11 0.00023 45.3 10.9 48 285-332 4-54 (319)
293 PRK14950 DNA polymerase III su 80.4 11 0.00023 49.1 11.8 41 290-330 21-64 (585)
294 PRK14955 DNA polymerase III su 80.2 13 0.00028 46.0 11.9 42 290-331 21-65 (397)
295 TIGR02928 orc1/cdc6 family rep 80.1 7 0.00015 47.3 9.6 45 286-330 19-66 (365)
296 PRK14952 DNA polymerase III su 79.8 9 0.0002 49.5 10.7 42 290-331 18-62 (584)
297 PRK14959 DNA polymerase III su 79.7 31 0.00067 44.9 15.3 37 294-330 25-64 (624)
298 PF00448 SRP54: SRP54-type pro 79.6 6.2 0.00013 43.9 8.1 34 307-341 4-37 (196)
299 COG0593 DnaA ATPase involved i 79.5 8 0.00017 47.6 9.5 52 428-479 175-234 (408)
300 PF13177 DNA_pol3_delta2: DNA 79.5 9.3 0.0002 41.0 9.2 44 290-333 2-48 (162)
301 PF13921 Myb_DNA-bind_6: Myb-l 79.4 1.7 3.7E-05 38.4 2.9 26 1084-1110 1-26 (60)
302 PRK14951 DNA polymerase III su 79.0 5.7 0.00012 51.6 8.5 42 290-331 21-65 (618)
303 KOG1911 Heterochromatin-associ 79.0 0.83 1.8E-05 53.3 1.0 25 131-155 64-89 (270)
304 TIGR00595 priA primosomal prot 78.9 12 0.00027 47.6 11.5 95 605-703 6-101 (505)
305 PRK14964 DNA polymerase III su 78.8 11 0.00024 47.7 10.8 40 292-331 20-62 (491)
306 PRK00149 dnaA chromosomal repl 78.7 12 0.00026 47.0 11.2 35 305-339 149-184 (450)
307 KOG1246 DNA-binding protein ju 78.5 1.4 3.1E-05 59.9 3.2 49 50-98 154-204 (904)
308 PHA03372 DNA packaging termina 78.4 5.6 0.00012 50.6 7.9 130 302-465 201-336 (668)
309 COG1200 RecG RecG-like helicas 78.4 26 0.00056 45.4 13.7 130 535-704 258-393 (677)
310 PF06733 DEAD_2: DEAD_2; Inte 78.3 1.7 3.6E-05 47.1 3.1 38 405-442 118-159 (174)
311 TIGR02768 TraA_Ti Ti-type conj 78.1 12 0.00026 50.0 11.4 59 283-345 350-408 (744)
312 PF05621 TniB: Bacterial TniB 77.8 12 0.00026 44.2 9.9 45 422-466 139-189 (302)
313 PF13245 AAA_19: Part of AAA d 77.2 5.7 0.00012 37.2 5.8 44 304-347 10-56 (76)
314 PRK14963 DNA polymerase III su 76.8 8.7 0.00019 48.9 9.2 42 290-331 19-63 (504)
315 PHA03333 putative ATPase subun 76.8 20 0.00044 46.6 12.1 59 288-347 172-231 (752)
316 TIGR01557 myb_SHAQKYF myb-like 76.6 3 6.5E-05 37.0 3.5 28 1081-1108 3-33 (57)
317 PRK05580 primosome assembly pr 76.4 16 0.00035 48.3 11.9 95 606-704 172-267 (679)
318 KOG1512 PHD Zn-finger protein 76.1 0.77 1.7E-05 51.9 -0.3 46 51-96 258-315 (381)
319 PRK14948 DNA polymerase III su 76.0 12 0.00026 48.8 10.4 42 290-331 21-65 (620)
320 PRK08903 DnaA regulatory inact 75.9 13 0.00029 41.8 9.6 30 302-331 40-69 (227)
321 PHA03368 DNA packaging termina 75.7 25 0.00053 45.7 12.4 108 303-442 253-366 (738)
322 PRK14087 dnaA chromosomal repl 75.5 11 0.00024 47.4 9.5 41 305-345 142-183 (450)
323 PRK06647 DNA polymerase III su 75.2 10 0.00023 48.9 9.4 25 307-331 41-65 (563)
324 TIGR00362 DnaA chromosomal rep 74.5 11 0.00024 46.6 9.1 34 306-339 138-172 (405)
325 PRK06871 DNA polymerase III su 74.0 15 0.00032 44.2 9.7 47 286-332 3-52 (325)
326 PRK06893 DNA replication initi 74.0 19 0.0004 41.0 10.2 27 306-332 41-67 (229)
327 PF00580 UvrD-helicase: UvrD/R 73.6 8 0.00017 45.2 7.3 53 286-344 1-56 (315)
328 PRK14953 DNA polymerase III su 73.2 15 0.00033 46.6 10.0 41 290-330 21-64 (486)
329 PRK04132 replication factor C 73.0 9.9 0.00021 51.0 8.6 49 428-476 630-679 (846)
330 KOG3612 PHD Zn-finger protein 72.9 2.5 5.4E-05 52.3 2.8 50 49-98 58-108 (588)
331 PRK08058 DNA polymerase III su 72.7 14 0.00031 44.4 9.2 43 289-331 10-55 (329)
332 COG3267 ExeA Type II secretory 72.6 14 0.0003 42.5 8.3 60 293-354 39-105 (269)
333 PRK11054 helD DNA helicase IV; 72.6 16 0.00036 48.2 10.4 85 284-376 195-285 (684)
334 PRK13889 conjugal transfer rel 72.5 16 0.00035 50.0 10.5 59 283-345 344-402 (988)
335 PF12861 zf-Apc11: Anaphase-pr 72.4 1.4 3.1E-05 41.9 0.5 43 54-98 35-80 (85)
336 PF14446 Prok-RING_1: Prokaryo 72.3 2.4 5.1E-05 37.0 1.7 30 51-80 5-38 (54)
337 PRK14722 flhF flagellar biosyn 72.1 32 0.0007 42.1 12.0 40 302-341 135-175 (374)
338 PRK09183 transposase/IS protei 71.9 15 0.00033 42.6 8.9 45 290-339 92-136 (259)
339 PRK04195 replication factor C 71.3 28 0.0006 44.2 11.8 43 285-328 17-63 (482)
340 PRK14088 dnaA chromosomal repl 71.3 22 0.00047 44.6 10.7 36 305-340 131-167 (440)
341 PRK05563 DNA polymerase III su 70.8 19 0.00041 46.6 10.2 25 307-331 41-65 (559)
342 KOG1473 Nucleosome remodeling 70.4 1.1 2.3E-05 59.2 -1.0 52 48-99 425-480 (1414)
343 cd01121 Sms Sms (bacterial rad 70.4 12 0.00026 45.9 7.9 50 302-352 80-129 (372)
344 PF01695 IstB_IS21: IstB-like 70.3 6.8 0.00015 42.8 5.3 47 302-353 45-91 (178)
345 PRK14086 dnaA chromosomal repl 70.0 20 0.00044 46.4 10.0 42 306-347 316-358 (617)
346 PRK14969 DNA polymerase III su 70.0 28 0.00061 44.7 11.5 41 290-330 21-64 (527)
347 KOG0384 Chromodomain-helicase 69.9 1.4 3.1E-05 58.9 -0.1 25 131-155 300-324 (1373)
348 TIGR03345 VI_ClpV1 type VI sec 69.9 16 0.00034 49.7 9.6 42 290-331 192-235 (852)
349 COG1484 DnaC DNA replication p 69.3 15 0.00033 42.5 8.1 66 286-352 87-152 (254)
350 PRK07133 DNA polymerase III su 69.3 21 0.00045 47.2 10.1 42 290-331 23-67 (725)
351 PTZ00112 origin recognition co 68.9 35 0.00076 45.8 11.7 45 286-330 759-807 (1164)
352 PRK05642 DNA replication initi 68.8 19 0.00041 41.1 8.7 36 430-465 99-138 (234)
353 COG1198 PriA Primosomal protei 68.4 22 0.00049 46.9 10.1 111 536-687 195-306 (730)
354 PRK06964 DNA polymerase III su 68.3 17 0.00037 44.0 8.5 47 286-332 2-49 (342)
355 PF00308 Bac_DnaA: Bacterial d 68.3 30 0.00066 39.1 10.1 37 428-464 97-137 (219)
356 PRK05896 DNA polymerase III su 67.8 30 0.00065 44.8 10.9 40 292-331 23-65 (605)
357 PRK14965 DNA polymerase III su 67.7 38 0.00083 44.0 12.1 40 292-331 23-65 (576)
358 PRK00411 cdc6 cell division co 67.0 23 0.0005 43.4 9.6 46 287-332 35-83 (394)
359 PRK00771 signal recognition pa 66.5 28 0.00061 43.5 10.1 37 305-341 96-132 (437)
360 PRK14954 DNA polymerase III su 66.3 25 0.00055 45.9 10.0 42 290-331 21-65 (620)
361 PRK12422 chromosomal replicati 66.3 21 0.00046 44.8 9.1 35 305-340 142-176 (445)
362 PRK10865 protein disaggregatio 65.7 21 0.00046 48.5 9.6 37 294-330 187-225 (857)
363 CHL00095 clpC Clp protease ATP 65.7 2.3E+02 0.0049 38.7 19.2 25 307-331 542-566 (821)
364 KOG0952 DNA/RNA helicase MER3/ 65.7 7.6 0.00016 51.8 5.1 112 301-443 940-1061(1230)
365 PF00004 AAA: ATPase family as 65.6 13 0.00028 37.4 5.9 35 307-345 1-35 (132)
366 PRK06090 DNA polymerase III su 65.5 32 0.00068 41.3 9.9 48 285-332 3-53 (319)
367 PRK10917 ATP-dependent DNA hel 65.2 32 0.0007 45.6 10.9 97 606-705 292-393 (681)
368 COG2256 MGS1 ATPase related to 65.1 20 0.00042 43.8 7.9 25 303-327 47-71 (436)
369 PRK13342 recombination factor 64.6 27 0.00058 43.4 9.6 24 305-328 37-60 (413)
370 PRK06731 flhF flagellar biosyn 63.8 50 0.0011 38.7 10.9 47 303-350 74-124 (270)
371 KOG4628 Predicted E3 ubiquitin 63.7 4.2 9.1E-05 48.6 2.1 44 52-98 230-276 (348)
372 TIGR01557 myb_SHAQKYF myb-like 63.2 16 0.00035 32.4 5.2 48 968-1015 5-55 (57)
373 PLN03212 Transcription repress 63.1 7.4 0.00016 44.3 3.8 28 1081-1108 25-52 (249)
374 COG0470 HolB ATPase involved i 63.1 18 0.00039 42.7 7.4 30 303-332 22-52 (325)
375 PRK12727 flagellar biosynthesi 62.0 65 0.0014 41.3 12.0 38 303-340 349-387 (559)
376 PRK11823 DNA repair protein Ra 61.2 23 0.00049 44.6 8.0 61 293-354 68-129 (446)
377 PRK07993 DNA polymerase III su 61.1 31 0.00068 41.6 8.9 47 285-331 2-51 (334)
378 COG3973 Superfamily I DNA and 61.0 15 0.00033 46.6 6.2 50 302-351 224-278 (747)
379 KOG1081 Transcription factor N 60.6 5.5 0.00012 50.0 2.5 47 49-98 87-133 (463)
380 TIGR00678 holB DNA polymerase 60.5 47 0.001 36.2 9.6 26 306-331 16-41 (188)
381 PF13901 DUF4206: Domain of un 60.3 6.1 0.00013 44.2 2.6 39 50-97 151-197 (202)
382 PRK07952 DNA replication prote 60.3 28 0.0006 40.2 7.9 62 288-354 79-144 (244)
383 KOG0991 Replication factor C, 59.7 6.9 0.00015 44.1 2.8 29 303-331 47-75 (333)
384 PLN03091 hypothetical protein; 59.5 9 0.00019 46.8 3.9 29 1081-1109 14-42 (459)
385 PF04364 DNA_pol3_chi: DNA pol 59.1 17 0.00038 38.0 5.5 79 610-706 15-97 (137)
386 cd03115 SRP The signal recogni 59.0 54 0.0012 35.2 9.6 35 307-341 3-37 (173)
387 PRK06305 DNA polymerase III su 58.8 39 0.00085 42.5 9.5 42 290-331 22-66 (451)
388 TIGR02639 ClpA ATP-dependent C 58.6 40 0.00087 45.1 10.2 29 303-331 202-230 (731)
389 TIGR00708 cobA cob(I)alamin ad 58.5 13 0.00028 40.5 4.6 59 421-479 90-152 (173)
390 PRK05986 cob(I)alamin adenolsy 58.5 93 0.002 34.6 11.2 62 421-482 108-173 (191)
391 PF07432 Hc1: Histone H1-like 58.2 15 0.00034 36.7 4.5 50 1282-1331 2-51 (123)
392 cd01124 KaiC KaiC is a circadi 58.1 24 0.00051 38.1 6.7 48 307-355 2-49 (187)
393 CHL00095 clpC Clp protease ATP 57.9 33 0.00073 46.5 9.3 29 303-331 199-227 (821)
394 PTZ00293 thymidine kinase; Pro 57.8 50 0.0011 37.2 9.1 35 307-342 7-41 (211)
395 PRK13833 conjugal transfer pro 57.1 21 0.00045 42.9 6.4 47 281-330 124-170 (323)
396 PRK12724 flagellar biosynthesi 56.6 52 0.0011 40.9 9.7 22 307-328 226-247 (432)
397 PRK14873 primosome assembly pr 56.6 45 0.00098 44.0 9.8 94 606-703 170-265 (665)
398 cd00561 CobA_CobO_BtuR ATP:cor 56.4 66 0.0014 34.7 9.4 58 421-478 88-149 (159)
399 TIGR03346 chaperone_ClpB ATP-d 56.4 37 0.00079 46.3 9.4 38 293-330 181-220 (852)
400 TIGR00643 recG ATP-dependent D 56.3 49 0.0011 43.5 10.3 97 606-705 266-367 (630)
401 PRK06835 DNA replication prote 55.9 25 0.00053 42.4 6.8 49 284-332 159-211 (329)
402 PRK13341 recombination factor 55.6 44 0.00096 44.5 9.6 23 305-327 53-75 (725)
403 PRK10865 protein disaggregatio 54.9 6.2E+02 0.014 34.8 20.5 26 306-331 600-625 (857)
404 TIGR02397 dnaX_nterm DNA polym 54.8 62 0.0013 38.9 10.2 41 291-331 20-63 (355)
405 KOG1807 Helicases [Replication 54.2 34 0.00075 44.6 7.8 91 284-380 377-473 (1025)
406 PF11793 FANCL_C: FANCL C-term 54.1 1.4 2.9E-05 40.8 -3.2 46 52-97 3-63 (70)
407 cd01120 RecA-like_NTPases RecA 53.9 56 0.0012 33.8 8.5 35 307-342 2-36 (165)
408 COG4626 Phage terminase-like p 53.9 66 0.0014 41.0 10.1 59 284-342 60-127 (546)
409 KOG0048 Transcription factor, 53.4 9.9 0.00021 43.6 2.8 48 1083-1133 11-58 (238)
410 KOG0442 Structure-specific end 53.1 3.8E+02 0.0083 36.0 16.7 55 697-757 546-605 (892)
411 PRK10867 signal recognition pa 53.0 66 0.0014 40.3 10.0 35 307-341 103-138 (433)
412 KOG1133 Helicase of the DEAD s 52.8 25 0.00055 45.3 6.3 43 284-326 14-56 (821)
413 TIGR03689 pup_AAA proteasome A 51.9 29 0.00064 44.2 6.9 29 302-330 214-242 (512)
414 KOG1244 Predicted transcriptio 51.7 4.5 9.9E-05 45.8 -0.2 59 50-108 223-299 (336)
415 TIGR02640 gas_vesic_GvpN gas v 51.6 35 0.00076 39.6 7.0 49 288-340 5-53 (262)
416 CHL00206 ycf2 Ycf2; Provisiona 51.5 38 0.00081 48.9 8.1 43 302-348 1628-1670(2281)
417 TIGR00959 ffh signal recogniti 51.5 60 0.0013 40.6 9.4 36 306-341 101-137 (428)
418 PRK11034 clpA ATP-dependent Cl 51.1 32 0.00069 46.1 7.3 29 303-331 206-234 (758)
419 PRK08699 DNA polymerase III su 50.7 81 0.0018 38.0 10.1 46 286-331 2-48 (325)
420 PRK05973 replicative DNA helic 50.6 37 0.00081 39.0 6.9 55 299-354 59-113 (237)
421 PRK10919 ATP-dependent DNA hel 50.3 26 0.00057 46.3 6.4 64 285-354 2-69 (672)
422 PF03354 Terminase_1: Phage Te 50.0 98 0.0021 39.3 11.2 46 419-466 114-162 (477)
423 COG1419 FlhF Flagellar GTP-bin 49.9 1.7E+02 0.0036 36.3 12.3 71 412-485 267-342 (407)
424 PRK14971 DNA polymerase III su 49.7 1.3E+02 0.0029 39.4 12.5 41 290-330 22-65 (614)
425 COG1435 Tdk Thymidine kinase [ 49.6 57 0.0012 36.3 7.7 34 429-465 83-118 (201)
426 TIGR01425 SRP54_euk signal rec 49.6 1.1E+02 0.0024 38.2 11.2 34 307-341 103-136 (429)
427 TIGR01074 rep ATP-dependent DN 49.0 59 0.0013 43.0 9.4 65 286-356 2-70 (664)
428 PF13771 zf-HC5HC2H: PHD-like 48.8 8.5 0.00018 36.9 1.2 31 49-79 34-67 (90)
429 KOG2543 Origin recognition com 48.2 4.8E+02 0.01 32.3 15.4 55 284-342 8-64 (438)
430 PF00265 TK: Thymidine kinase; 48.1 73 0.0016 34.9 8.4 34 308-342 5-38 (176)
431 PF13832 zf-HC5HC2H_2: PHD-zin 47.8 8.9 0.00019 38.3 1.2 30 50-79 54-86 (110)
432 PRK13826 Dtr system oriT relax 47.7 1.1E+02 0.0023 42.8 11.5 57 284-344 380-436 (1102)
433 TIGR02782 TrbB_P P-type conjug 47.4 36 0.00078 40.5 6.3 44 284-330 115-158 (299)
434 PF01393 Chromo_shadow: Chromo 47.0 8.6 0.00019 34.2 0.8 26 192-217 3-28 (58)
435 PRK09376 rho transcription ter 46.9 30 0.00064 42.6 5.5 31 301-331 166-196 (416)
436 PRK07399 DNA polymerase III su 46.9 1.2E+02 0.0025 36.5 10.6 43 290-332 9-54 (314)
437 COG2255 RuvB Holliday junction 46.7 13 0.00028 43.3 2.4 27 429-455 104-131 (332)
438 TIGR01075 uvrD DNA helicase II 46.4 48 0.001 44.3 8.0 67 285-357 4-74 (715)
439 KOG0738 AAA+-type ATPase [Post 45.6 70 0.0015 39.0 8.1 48 304-355 245-292 (491)
440 PRK06995 flhF flagellar biosyn 45.4 93 0.002 39.5 9.7 33 307-339 259-292 (484)
441 PF13639 zf-RING_2: Ring finge 45.4 2.5 5.3E-05 35.0 -2.7 40 52-96 1-44 (44)
442 KOG0049 Transcription factor, 45.4 51 0.0011 41.9 7.2 75 969-1107 363-438 (939)
443 COG0541 Ffh Signal recognition 45.2 58 0.0013 40.3 7.6 106 307-455 103-208 (451)
444 PF00437 T2SE: Type II/IV secr 45.1 33 0.00072 39.7 5.5 37 295-331 118-154 (270)
445 cd01128 rho_factor Transcripti 44.4 87 0.0019 36.3 8.7 26 302-327 14-39 (249)
446 PRK11773 uvrD DNA-dependent he 44.3 37 0.00081 45.3 6.5 52 285-342 9-63 (721)
447 TIGR00416 sms DNA repair prote 44.3 51 0.0011 41.6 7.3 52 302-354 92-143 (454)
448 PRK13894 conjugal transfer ATP 44.2 40 0.00087 40.5 6.1 44 283-329 130-173 (319)
449 TIGR03499 FlhF flagellar biosy 43.9 76 0.0016 37.4 8.3 38 304-341 194-232 (282)
450 PRK09087 hypothetical protein; 43.9 54 0.0012 37.3 6.8 36 430-465 89-125 (226)
451 CHL00176 ftsH cell division pr 43.9 87 0.0019 41.2 9.5 24 304-327 216-239 (638)
452 PF12846 AAA_10: AAA-like doma 43.8 59 0.0013 37.6 7.4 45 304-349 1-45 (304)
453 PF06745 KaiC: KaiC; InterPro 43.7 37 0.00081 38.2 5.5 55 302-356 17-71 (226)
454 PRK08939 primosomal protein Dn 43.6 36 0.00078 40.6 5.6 36 303-339 155-190 (306)
455 COG0552 FtsY Signal recognitio 43.5 1.3E+02 0.0028 36.2 9.9 120 307-472 142-275 (340)
456 cd00730 rubredoxin Rubredoxin; 43.4 13 0.00028 32.2 1.3 34 65-99 3-44 (50)
457 TIGR00064 ftsY signal recognit 43.2 1.5E+02 0.0032 34.8 10.5 33 307-340 75-107 (272)
458 TIGR00767 rho transcription te 42.9 1E+02 0.0023 38.1 9.3 31 301-331 165-195 (415)
459 PRK12377 putative replication 42.8 1.1E+02 0.0024 35.4 9.2 43 304-347 101-143 (248)
460 PRK14970 DNA polymerase III su 42.5 1.1E+02 0.0023 37.4 9.6 39 292-330 24-65 (367)
461 PRK10416 signal recognition pa 42.4 2E+02 0.0043 34.6 11.6 33 307-340 117-149 (318)
462 KOG0737 AAA+-type ATPase [Post 42.2 27 0.00059 42.1 4.1 50 302-355 125-174 (386)
463 COG5114 Histone acetyltransfer 42.1 22 0.00047 41.4 3.2 37 1073-1111 57-93 (432)
464 PF14061 Mtf2_C: Polycomb-like 41.4 14 0.00031 31.5 1.2 22 196-217 27-49 (50)
465 KOG0780 Signal recognition par 41.2 3E+02 0.0065 33.9 12.3 72 604-675 109-184 (483)
466 PRK14721 flhF flagellar biosyn 40.6 1.6E+02 0.0036 36.7 10.7 55 428-483 269-328 (420)
467 cd00162 RING RING-finger (Real 40.6 8.5 0.00018 30.9 -0.2 41 54-97 2-43 (45)
468 PRK10263 DNA translocase FtsK; 40.6 62 0.0014 45.2 7.6 41 303-343 1009-1052(1355)
469 KOG0780 Signal recognition par 40.5 72 0.0016 38.9 7.2 58 307-365 104-161 (483)
470 KOG4218 Nuclear hormone recept 40.3 14 0.00031 43.3 1.4 51 46-96 10-74 (475)
471 PRK05564 DNA polymerase III su 40.1 95 0.0021 37.0 8.5 25 307-331 29-53 (313)
472 PF06068 TIP49: TIP49 C-termin 39.7 40 0.00086 41.0 5.0 40 303-344 49-88 (398)
473 smart00300 ChSh Chromo Shadow 39.7 22 0.00048 32.0 2.3 30 192-224 7-36 (61)
474 PRK06921 hypothetical protein; 39.6 90 0.0019 36.5 7.9 38 303-340 116-153 (266)
475 PRK08760 replicative DNA helic 39.3 80 0.0017 40.1 8.0 63 293-355 218-280 (476)
476 TIGR00580 mfd transcription-re 38.8 1.4E+02 0.003 41.1 10.6 96 606-704 482-582 (926)
477 cd01129 PulE-GspE PulE/GspE Th 38.7 55 0.0012 38.2 6.0 42 286-329 64-105 (264)
478 KOG2340 Uncharacterized conser 37.7 53 0.0011 41.3 5.7 109 613-723 540-653 (698)
479 PF06564 YhjQ: YhjQ protein; 37.6 55 0.0012 37.8 5.6 33 312-345 10-44 (243)
480 cd00984 DnaB_C DnaB helicase C 37.5 43 0.00094 37.9 4.8 43 300-342 9-51 (242)
481 PRK06646 DNA polymerase III su 37.3 49 0.0011 35.5 4.8 82 605-706 10-95 (154)
482 PHA02929 N1R/p28-like protein; 37.1 13 0.00028 42.6 0.5 49 50-102 173-229 (238)
483 PRK05748 replicative DNA helic 37.1 75 0.0016 40.0 7.2 61 292-352 191-251 (448)
484 COG1066 Sms Predicted ATP-depe 37.1 1.1E+02 0.0024 37.7 8.2 51 304-356 93-143 (456)
485 KOG0921 Dosage compensation co 37.1 53 0.0012 43.6 5.8 32 299-330 388-419 (1282)
486 TIGR03877 thermo_KaiC_1 KaiC d 37.1 83 0.0018 35.9 7.1 52 302-354 19-70 (237)
487 cd00034 ChSh Chromo Shadow Dom 36.8 17 0.00037 31.9 1.1 29 194-225 2-31 (54)
488 PRK05728 DNA polymerase III su 36.8 56 0.0012 34.5 5.1 82 606-706 11-96 (142)
489 PHA00012 I assembly protein 36.8 83 0.0018 37.8 6.9 25 308-332 5-29 (361)
490 KOG0457 Histone acetyltransfer 35.9 43 0.00094 41.0 4.5 47 967-1015 73-120 (438)
491 PRK13766 Hef nuclease; Provisi 35.3 5.1E+02 0.011 35.0 15.1 93 606-705 39-141 (773)
492 PRK14723 flhF flagellar biosyn 35.3 1.8E+02 0.004 39.0 10.4 35 306-340 187-222 (767)
493 PF01443 Viral_helicase1: Vira 35.2 38 0.00083 37.9 3.9 41 428-471 62-102 (234)
494 TIGR03345 VI_ClpV1 type VI sec 35.0 7.1E+02 0.015 34.2 16.2 25 307-331 599-623 (852)
495 PRK08533 flagellar accessory p 34.9 98 0.0021 35.3 7.1 52 302-354 22-73 (230)
496 COG1474 CDC6 Cdc6-related prot 34.9 3.8E+02 0.0083 32.9 12.5 47 285-331 20-69 (366)
497 PLN03208 E3 ubiquitin-protein 34.5 19 0.00041 39.8 1.2 50 51-100 18-79 (193)
498 PRK12726 flagellar biosynthesi 34.4 1.9E+02 0.0041 35.8 9.6 47 304-351 206-256 (407)
499 PRK14712 conjugal transfer nic 34.4 1.8E+02 0.0038 42.3 10.6 59 285-345 835-896 (1623)
500 PRK06904 replicative DNA helic 34.4 1E+02 0.0022 39.2 7.8 60 293-352 210-269 (472)
No 1
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=5.9e-171 Score=1567.37 Aligned_cols=926 Identities=42% Similarity=0.721 Sum_probs=757.6
Q ss_pred ccccccccccccCccCCC----Ccccc--------cchhhhHHHhhhhccCCCcccccccchhhHHHhhhcChhHHHHHH
Q 000500 101 DIDKILDCEMRPTVAGDS----DVSKL--------GSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVN 168 (1460)
Q Consensus 101 diekiL~~R~~p~~~~~~----~~~~~--------~~k~~~~~EYlVKWkg~Sy~HctWvpe~~L~~~~~~~~~~k~kl~ 168 (1460)
.|+.+++||.++...+.. ..... ..+.....||||||+|+||+||||+++++|... ..++-+|++
T Consensus 184 ~ie~v~~~r~~~~~~~~~~~~~~i~d~~~p~~~~~~~~~~e~~qFlIKWkg~SyLHctWet~~~L~~~---~~rG~kKv~ 260 (1373)
T KOG0384|consen 184 TIERVLDHRGKKGATGSAETEYAIPDKGDPSAVFEEKKTEEEEQFLIKWKGWSYLHCTWETESELLEM---NVRGLKKVD 260 (1373)
T ss_pred hhHHHhhhhccccccCCCcccccccccCCccccccccCcchhhhhheeeccccceeccccchHHHHhh---hHHHHHHHH
Confidence 688888888654433210 00000 011134579999999999999999999998643 234447999
Q ss_pred hHhhhhccCCC--chhhhccCCCCccchhhhhhhccCCCCceEEEEEeccccccccccccccccc-chHHHHHHHHhhhc
Q 000500 169 NFHRQMSSNNN--AEEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISA-FQPEIERFIKIQSR 245 (1460)
Q Consensus 169 ~f~kk~~~~~~--~~ed~~~i~pe~~~veRII~~r~~~~~~eyLVKWkgL~Y~~~TWE~~~~~~~-~~~~i~~f~~~~~~ 245 (1460)
||.++...... ..++...++++|.+|||||++....+ .+|||||++|||++||||...+|.. .+.+++.|..+...
T Consensus 261 nf~kK~~e~~~~~r~E~~~~~~~dy~~VdRIia~~~~~d-~eYLvKW~~LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~s 339 (1373)
T KOG0384|consen 261 NFKKKVIEEDRWRRQEREEDLNKDYVIVDRIIAEQTSKD-PEYLVKWRGLPYEECTWEDAEDIAKKAQEEIEEFQSRENS 339 (1373)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcccCCC-ceeEEEecCCCcccccccchhhhhhhHHHHHHHHhhhhcc
Confidence 99988543321 12334568899999999999987655 8999999999999999999998864 67788888865432
Q ss_pred ccccccCcCCCCCccccccCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHH
Q 000500 246 SHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL 325 (1460)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l 325 (1460)
.. .+...+...+.++.|.++..||.|+.|++||+||++|||||.++|+++.+||||||||||||||+|+||
T Consensus 340 k~---------~p~~~~~~~~~rp~~~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl 410 (1373)
T KOG0384|consen 340 KT---------LPNKGCKYRPQRPRFRKLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFL 410 (1373)
T ss_pred cc---------CCCCccccCccchhHHHhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHH
Confidence 21 112223334567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCC--CCcEEEEEccccHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccc
Q 000500 326 ASLFGER--ISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQD 403 (1460)
Q Consensus 326 ~~L~~~~--~~p~LIVvP~sll~qW~~E~~kw~P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1460)
.+|+... .||||||||+|++.+|++||..|+ ++++++|+|+..+|++|++|+|++.... .
T Consensus 411 ~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~-----------------~ 472 (1373)
T KOG0384|consen 411 SYLFHSLQIHGPFLVVVPLSTITAWEREFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNT-----------------K 472 (1373)
T ss_pred HHHHHhhhccCCeEEEeehhhhHHHHHHHHHHh-hhceeeeecchhHHHHHHHHHheecCCc-----------------c
Confidence 9998864 579999999999999999999999 9999999999999999999999876541 2
Q ss_pred cccccEEEecHHHHHhhhcccCCCcceEEEeccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcC
Q 000500 404 RIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1460)
Q Consensus 404 ~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p 483 (1460)
..+|+++||||+++.+|...|..++|.+++|||||||||..|+++..|..+..+||||+||||+|||+.|||+|||||+|
T Consensus 473 ~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P 552 (1373)
T KOG0384|consen 473 KLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMP 552 (1373)
T ss_pred ccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHhhhhhHHHHHHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcC
Q 000500 484 GKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG 563 (1460)
Q Consensus 484 ~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~ 563 (1460)
+.|.++++|...| +..+++.+..||.+|+||||||+|+||++.||++.|+|++|+||.+|+++|++||++|+.+|.++.
T Consensus 553 ~kf~~~~~f~~~~-~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~ 631 (1373)
T KOG0384|consen 553 GKFDSWDEFLEEF-DEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGA 631 (1373)
T ss_pred CCCCcHHHHHHhh-cchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccC
Confidence 9999999999999 778889999999999999999999999999999999999999999999999999999999999764
Q ss_pred -CchhhHHHHHHHHHHHhCCcccccCCCCCcccc------hHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhh
Q 000500 564 -GAQISLINVVMELRKLCCHPYMLEGVEPDIEDT------NESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM 636 (1460)
Q Consensus 564 -~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~~~------~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~ 636 (1460)
++..+|+|++|+||||||||||+.+++...... ++.+..+|.+||||.+|++||.+|++.||||||||||++|
T Consensus 632 ~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRm 711 (1373)
T KOG0384|consen 632 KGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRM 711 (1373)
T ss_pred CCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHH
Confidence 344799999999999999999999987654332 3678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHH
Q 000500 637 LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMA 716 (1460)
Q Consensus 637 LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAig 716 (1460)
||||++||..+||+|.||||++.++.|+++||+||+++|+.|||||||||||+||||++||||||||||||||+|+||++
T Consensus 712 LDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqA 791 (1373)
T KOG0384|consen 712 LDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQA 791 (1373)
T ss_pred HHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCceEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcccc-------ccCCCHHHHHHHHHhchhhhhcccCcCC
Q 000500 717 RAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK-------AQNINQEELDDIIRYGSKELFADENDEG 789 (1460)
Q Consensus 717 RahRiGQ~k~V~VyrLvt~~TiEE~I~e~a~~K~~L~~~Vig~~~-------~~~~~~~el~~ll~~ga~~lf~~~~~e~ 789 (1460)
|||||||++.|.||||||++||||.|+++|++||.|+++||+.|. .+.++++||.+||+|||++||.++++++
T Consensus 792 RaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene~ 871 (1373)
T KOG0384|consen 792 RAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENEE 871 (1373)
T ss_pred HHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhcccccc
Confidence 999999999999999999999999999999999999999998874 3568999999999999999999987665
Q ss_pred CCcccccCCHHHHHHHhccCCCCCcccCCCCcchhhHHhHhhhhcccchhHHHHHHHHHHHHHHHhhccCCCCccchhhH
Q 000500 790 GKSRQIHYDDAAIDRLLDRDQVGDEEASLDDEDEDGFLKAFKVANFEYIEEVEAAAEEEAQKLAAENKSSMSNSERSSYW 869 (1460)
Q Consensus 790 ~~~~~i~~~d~~id~il~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 869 (1460)
. .+.++|||+||.|.+...++.++ -..++.+|++|+||+|...|+..-+ .. +.-.|
T Consensus 872 s-----~~~e~DIDeIL~rae~~~t~~~~-~~~a~e~ls~fkvad~~~dd~~~~~---------------~~---~didw 927 (1373)
T KOG0384|consen 872 S-----KFCEMDIDEILERAETRITEESD-FMKASELLSQFKVADIKADDPADLE---------------AE---RDIDW 927 (1373)
T ss_pred c-----cccccCHHHHHhhcccccccccc-cchhHHHHhhccccccccCChhhhh---------------hh---ccCCh
Confidence 4 35679999999999987665442 2457889999999999986652211 00 11469
Q ss_pred HHHHHHHHH-----HHHHHHhhhcCCCCCCcc--cccccchhhcccccccCCCCcccccccccCCCCCCCCCCCCCCCCc
Q 000500 870 EELLKDRYE-----VHKVEEFNALGKGKRSRK--QMVSVEEDDLAGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPN 942 (1460)
Q Consensus 870 ~~~~~~~~~-----~~~~~~~~~~~~~~r~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1460)
+.++++... ++...+.+.+...+|.|. +......+. + . .++ .++. .. .+ ..
T Consensus 928 d~iipe~~r~~~~eeer~ke~ee~~~~~rer~~k~~~~~~~~~--~-~--~~~----~~e~-----~~-------~~-~~ 985 (1373)
T KOG0384|consen 928 DRIIPEEERERIEEEERLKELEELYSEPRERERKKNRLNDSHG--R-A--ESR----SVEK-----SL-------GK-KG 985 (1373)
T ss_pred hhhCCHHHHhcchhhhhHHHHHhhccchhhhhhhccccCcccc--c-c--ccc----cccc-----cc-------cc-cc
Confidence 999987543 233344555665555554 322211110 0 0 000 0000 00 00 01
Q ss_pred cccccCCCCCCCCCccccccchhhcCCChHHHHHHHHHHHhcCCCCcchhhhc--hhhcCCCHHHHHHHHHHHHHhhhhc
Q 000500 943 KKRSRVDSMEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFT--PRLKQKSYEEIREYGILFLTHITED 1020 (1460)
Q Consensus 943 ~~~~~~~~~~~~~L~~~e~~~l~v~GF~~w~Rr~Fv~a~~KyG~~~~~~~~ia--~el~~Ks~eEvk~Ya~lF~~~~~E~ 1020 (1460)
++|.+.+. + ..-.+.||+..+.|+|++++++||.+.+..+.|+ +++..++++++++.+.+.+..|.+.
T Consensus 986 ~~r~r~~~------~----~g~~~~~~~e~eir~~~ra~~kfg~~~~r~d~~~~~a~l~~~s~~~~~~l~~~~~~~c~~a 1055 (1373)
T KOG0384|consen 986 KGRWREIL------K----RGEEKGGFTEKEIRRFYRAYLKFGLPLERLDEIIKDAELVDKSPAELKKLGELLHNACKSA 1055 (1373)
T ss_pred cccccccc------c----cchhhcCCCHHHHHHHHHHHHHhccHHHHHHHHHhhceeeccCHHHHHHHHHHHHhhhhhh
Confidence 22222111 1 1235679999999999999999999987766776 5788999999999999999999876
Q ss_pred cCCC----CCcc---C----CCCc-------Cc--chhhHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccc---C
Q 000500 1021 ITDS----PTFS---D----GVPK-------EG--LRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYP---G 1077 (1460)
Q Consensus 1021 i~d~----e~~~---d----~i~k-------~~--~k~~~vl~Ri~~~~ll~~Kv~~~~~~p~~~~~~~~l~~~y~---~ 1077 (1460)
+.+. .++. . +.++ ++ +....|+.|+..+..|.+.|-.....+. . ..+.|. .
T Consensus 1056 ~~~~~~~~kk~~~~~~~~~~~p~~~a~~~~f~gv~~na~~vl~rv~~L~~L~~~i~~~~e~~~--~----~~~~~~~~~~ 1129 (1373)
T KOG0384|consen 1056 VSEFGSNYKKTGGAREGKNKKPERKAVDFKFKGVKVNANKVLLRVEELYYLHKEIPGDPEDPN--Q----FIIDYLPKSV 1129 (1373)
T ss_pred cchhhhccccccccccccccCccchhhheeecceehhHHHHHHHHHHHHHHHHhccCCccccc--c----cccCCCCccc
Confidence 5442 1111 0 0010 01 3345677777777777777655421221 1 111121 1
Q ss_pred CCCCCccChHHHHHHHHHHHHhccchhHHhhhCcccchHHHHH
Q 000500 1078 LRGGKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVIC 1120 (1460)
Q Consensus 1078 ~~~~~~w~~eeD~~LL~gi~k~GyG~We~Ik~D~~l~l~~~i~ 1120 (1460)
..+++.|+.++|..||+|||+||||+|++|++||+|+|.+||.
T Consensus 1130 ~~~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dKi~ 1172 (1373)
T KOG0384|consen 1130 HSWDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDKIF 1172 (1373)
T ss_pred cCcccCCCchhhhhHhhhhhhcccccHHHhccCccccchhhhc
Confidence 2378999999999999999999999999999999999999994
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=7.3e-145 Score=1284.04 Aligned_cols=767 Identities=39% Similarity=0.630 Sum_probs=635.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHh-CC-CCcEEEEEccccHHHHHHHHH
Q 000500 276 HSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ER-ISPHLVVAPLSTLRNWEREFA 353 (1460)
Q Consensus 276 ~~P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~-~~-~~p~LIVvP~sll~qW~~E~~ 353 (1460)
.+|.++.+|.|||||++|||||+.+|.++.|||||||||||||+|+|+|+.||+. .+ .|||||+||+||+.||.+||.
T Consensus 158 ~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~ 237 (971)
T KOG0385|consen 158 DSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFK 237 (971)
T ss_pred CCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999987 34 579999999999999999999
Q ss_pred HHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEE
Q 000500 354 TWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMI 433 (1460)
Q Consensus 354 kw~P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VI 433 (1460)
+|+|++++++|+|++..|..+++.-+ ....|+|+||||+++.++...|+.++|.++|
T Consensus 238 rf~P~l~~~~~~Gdk~eR~~~~r~~~-----------------------~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylv 294 (971)
T KOG0385|consen 238 RFTPSLNVVVYHGDKEERAALRRDIM-----------------------LPGRFDVCITSYEIAIKDKSFLKKFNWRYLV 294 (971)
T ss_pred HhCCCcceEEEeCCHHHHHHHHHHhh-----------------------ccCCCceEeehHHHHHhhHHHHhcCCceEEE
Confidence 99999999999999999987766422 1248999999999999999999999999999
Q ss_pred eccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhh---hhHHHHHHHHH
Q 000500 434 VDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---NQEEQISRLHR 510 (1460)
Q Consensus 434 vDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~---~~~~~i~~L~~ 510 (1460)
|||||||||.+|++++.|+.|.+.+||||||||+|||+.|||+|||||.|+.|.+.+.|..||... ...+.+.+||.
T Consensus 295 IDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~ 374 (971)
T KOG0385|consen 295 IDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHK 374 (971)
T ss_pred echhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999652 34468999999
Q ss_pred hhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHhCCcccccCC
Q 000500 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGG-AQISLINVVMELRKLCCHPYMLEGV 589 (1460)
Q Consensus 511 ~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~-~~~~l~nil~~LRk~c~hP~L~~~~ 589 (1460)
+|+||+|||+|.+|++.|||+.+.+++|.||.+|+++|++++.+....++..+. ....++|++|+|||||||||||+++
T Consensus 375 vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ 454 (971)
T KOG0385|consen 375 VLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGA 454 (971)
T ss_pred hhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCC
Confidence 999999999999999999999999999999999999999999999999886554 6789999999999999999999999
Q ss_pred CCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHH
Q 000500 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1460)
Q Consensus 590 e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~ 669 (1460)
+|..+.+.. .+|+.+||||.+|++||.+|+++||||||||||++|||||++||..+||.||||||+|+.++|..+|+.
T Consensus 455 ePg~pyttd--ehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~ 532 (971)
T KOG0385|consen 455 EPGPPYTTD--EHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEA 532 (971)
T ss_pred CCCCCCCcc--hHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHh
Confidence 997666554 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCCHHHHHHHHHHHH
Q 000500 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKK 749 (1460)
Q Consensus 670 Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~a~~K 749 (1460)
||++++.+|||||||||||+||||++|||||+||+||||+.|+||++|||||||+|+|.||||||++||||+|+++|..|
T Consensus 533 fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~K 612 (971)
T KOG0385|consen 533 FNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAK 612 (971)
T ss_pred cCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccc-----cccCCCHHHHHHHHHhchhhhhcccCcCCCCcccccCCHHHHHHHhccCCCCCcccCCC--Ccc
Q 000500 750 MVLEHLVVGRL-----KAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLD--DED 822 (1460)
Q Consensus 750 ~~L~~~Vig~~-----~~~~~~~~el~~ll~~ga~~lf~~~~~e~~~~~~i~~~d~~id~il~r~~~~~~~~~~~--~~~ 822 (1460)
+.|+++||+.. ....++++++..|+++|+..+|...+.+ .++ |||.||.|++..+.+.+.. ..+
T Consensus 613 L~Ld~~VIq~g~l~~~~~~~~~k~~~l~~~r~g~~~~f~~~es~--------~~d-Did~il~~~e~kt~e~~~~~~~~~ 683 (971)
T KOG0385|consen 613 LRLDKLVIQQGRLEEQKSNGLGKDELLNLLRFGADPVFESKEST--------ISD-DIDRILERGEEKTAELNAKEAKLG 683 (971)
T ss_pred hchhhhhhccCchhhhhccccchHHHHHHHHcCchhhhhhcccc--------cch-hHHHHHHhhhhhccCcchHHHhhC
Confidence 99999999543 2345789999999999999999876643 234 9999999998777664321 011
Q ss_pred hhhHHhHh---hhhcccchhHHHHHHHHHHHHHHHhhccCCCCccchhhHHHHHHHHHHHHHHHHhhhcCCCCCCccccc
Q 000500 823 EDGFLKAF---KVANFEYIEEVEAAAEEEAQKLAAENKSSMSNSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQMV 899 (1460)
Q Consensus 823 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~r~~~~ 899 (1460)
.++ +..| .+.+|+..+- .+. .. .. .|-+..+..-......-...+..|-|..|++.
T Consensus 684 ~~~-~~~~~~~~~y~~eG~d~----~ek--~~-------------~~-~wiep~krerk~~d~y~r~~l~~g~~~P~~~~ 742 (971)
T KOG0385|consen 684 ESD-LRNFGMISVYNFEGEDY----KEK--QS-------------LF-KWIEPPKRERKANDAYFREALRVGEPPPKQPE 742 (971)
T ss_pred cch-hhhcCcceeeccCCcch----hhh--hh-------------hh-hhcCCchhhhhhhhhHHHHHHhcCCCCCCCcc
Confidence 111 1122 2333332111 000 00 00 03222111100000011123334444444443
Q ss_pred ccchhhc-ccccccCCCCcccccccccCCCCCCCCCCCCCCCCccccccCCCCCCCCCcccc---ccchhhcCCChHHHH
Q 000500 900 SVEEDDL-AGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPNKKRSRVDSMEPPPLMEGE---GRSFRVLGFSQNQRA 975 (1460)
Q Consensus 900 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~e---~~~l~v~GF~~w~Rr 975 (1460)
+....-+ ..+.+.. +.+-.+|... ..+.. .....||+.+| ++.++.+||++|++|
T Consensus 743 ~~d~qf~p~~L~el~-~kei~~~~k~------------------~e~~k--in~~~~lt~ee~~~k~~ll~~gft~w~k~ 801 (971)
T KOG0385|consen 743 VQDFQFFPKRLFELL-EKEIEYYRKT------------------IEQKK--INNAEPLTQEEEEEKEELLSQGFTNWTKR 801 (971)
T ss_pred ccccccCcHHHHHHH-HHHHHHHHHH------------------HHHHh--ccCCCCCCcHHHhhhhhhhhccccchhhh
Confidence 2110000 0111100 0000111100 01111 22345777654 679999999999999
Q ss_pred H---HHHHHHhcCCCCcchhhhchhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccCCCCcCcchhhHHHHHHHHHHHHH
Q 000500 976 A---FVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHITEDITDSPTFSDGVPKEGLRIQDVLVRIAVLLLIR 1052 (1460)
Q Consensus 976 ~---Fv~a~~KyG~~~~~~~~ia~el~~Ks~eEvk~Ya~lF~~~~~E~i~d~e~~~d~i~k~~~k~~~vl~Ri~~~~ll~ 1052 (1460)
+ |++++.|||++++ +.|++++.+ |++||.+|+++||++|.| ++|+++++..|++|+.+++.. .-++.+|.
T Consensus 802 df~~fi~a~eKygr~di--~~ia~~~e~-~~eev~~y~rvfwer~~e-l~d~ek~~~~ie~~e~~i~r~---~~~~~~ld 874 (971)
T KOG0385|consen 802 DFNQFIKANEKYGRDDI--ENIAAEVEG-TPEEVGEYARVFWERLEE-LSDIEKIIYQIERGEKRIQRG---DSIKKALD 874 (971)
T ss_pred hHHHHHHHhhccCcchh--hhhHHhhcC-CHHHHHHHHHHHHHHHHH-hhhhHHHHHHHhhhHhhhhHH---HHHHHHHh
Confidence 6 5677889999886 589999998 999999999999999996 999999999999998888764 45678999
Q ss_pred HHHHhccCCCCCCCccccccccccCCCCCCccChHHHHHHHHHHHHhccch---hHHhhhC----c----ccchHHHHHH
Q 000500 1053 DKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKHGYGR---WQAIVDD----K----DLKVQEVICQ 1121 (1460)
Q Consensus 1053 ~Kv~~~~~~p~~~~~~~~l~~~y~~~~~~~~w~~eeD~~LL~gi~k~GyG~---We~Ik~D----~----~l~l~~~i~~ 1121 (1460)
.|+.+|. .| +++.+.|+.+ +++.|++++|+||+||+||+||++ |+.+++. | +|.+.++..+
T Consensus 875 ~k~~~~k-~p------~~l~i~~~~n-k~~~ys~~edrfL~~~l~K~g~~~~~~~e~lr~~~~~~~~frfdw~~~sRt~~ 946 (971)
T KOG0385|consen 875 DKIARYK-AP------HQLRIQYGTN-KGKNYSEEEDRFLECMLHKLGFDAENVYEELRQPIRNSPQFRFDWFIKSRTAM 946 (971)
T ss_pred hhHhhhc-Cc------hheeeeeccc-cCCCCchhhHHHHHHHHHHhccCchhHHHHHHHHHhcCcccccceeeehhhHH
Confidence 9999997 44 4578899765 889999999999999999999998 8876554 4 7889999999
Q ss_pred hhcCCCCCCCCC
Q 000500 1122 ELNLPFINLPVP 1133 (1460)
Q Consensus 1122 e~~~~~~~~~~~ 1133 (1460)
|+..+|.+++.-
T Consensus 947 el~Rr~ntli~~ 958 (971)
T KOG0385|consen 947 ELQRRCNTLITL 958 (971)
T ss_pred HHHhcCCeeEEe
Confidence 999999987753
No 3
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.2e-124 Score=1206.29 Aligned_cols=764 Identities=38% Similarity=0.627 Sum_probs=631.5
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhC--CCCcEEEEEccccHHHHH
Q 000500 272 QQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWE 349 (1460)
Q Consensus 272 ~~~~~~P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~--~~~p~LIVvP~sll~qW~ 349 (1460)
..+..+|.++. ++|||||++||+||+.++.++.+||||||||||||+|+|+++.++... ..+|+|||||++++.||.
T Consensus 157 ~~l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~ 235 (1033)
T PLN03142 157 TRLLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWM 235 (1033)
T ss_pred ceeccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHH
Confidence 45668899998 799999999999999999999999999999999999999999998753 346999999999999999
Q ss_pred HHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcc
Q 000500 350 REFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (1460)
Q Consensus 350 ~E~~kw~P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w 429 (1460)
+||.+|+|.+++++|+|+...|..++...+ ....|+|+||||+++.++...|..+.|
T Consensus 236 ~Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~-----------------------~~~~~dVvITSYe~l~~e~~~L~k~~W 292 (1033)
T PLN03142 236 NEIRRFCPVLRAVKFHGNPEERAHQREELL-----------------------VAGKFDVCVTSFEMAIKEKTALKRFSW 292 (1033)
T ss_pred HHHHHHCCCCceEEEeCCHHHHHHHHHHHh-----------------------cccCCCcceecHHHHHHHHHHhccCCC
Confidence 999999999999999999988876655322 124689999999999999999999999
Q ss_pred eEEEeccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhh---hhHHHHH
Q 000500 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---NQEEQIS 506 (1460)
Q Consensus 430 ~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~---~~~~~i~ 506 (1460)
++|||||||+|||..|+++++++.+.+.+||+|||||+||++.|||+||+||.|+.|++...|..+|... .....+.
T Consensus 293 ~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~ 372 (1033)
T PLN03142 293 RYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQ 372 (1033)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999642 3356788
Q ss_pred HHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccc
Q 000500 507 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1460)
Q Consensus 507 ~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~ 586 (1460)
.|+.+|+|||+||+|++|...|||+.+.+++|.||+.|+.+|+.++.+....++.. +....+++++|+||+||+||||+
T Consensus 373 ~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g-~~~~~LlnilmqLRk~cnHP~L~ 451 (1033)
T PLN03142 373 QLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAG-GERKRLLNIAMQLRKCCNHPYLF 451 (1033)
T ss_pred HHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhCCHHhh
Confidence 99999999999999999999999999999999999999999999999888777653 35567899999999999999999
Q ss_pred cCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Q 000500 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1460)
Q Consensus 587 ~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~ 666 (1460)
.+.++...... ...++..|+|+.+|+++|..+...|+||||||||+.++++|+++|..+|++|++|+|+++..+|+.+
T Consensus 452 ~~~ep~~~~~~--~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~ 529 (1033)
T PLN03142 452 QGAEPGPPYTT--GEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDAS 529 (1033)
T ss_pred hcccccCcccc--hhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 88776544332 3678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCCHHHHHHHHH
Q 000500 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (1460)
Q Consensus 667 Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~a 746 (1460)
|++||++++..++|||||+|||+||||++||+||+||+||||+.++||+||||||||+++|.||||++++||||+|++++
T Consensus 530 Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera 609 (1033)
T PLN03142 530 IDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERA 609 (1033)
T ss_pred HHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHH
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccc---cccCCCHHHHHHHHHhchhhhhcccCcCCCCcccccCCHHHHHHHhccCCCCCcccCC--CCc
Q 000500 747 KKKMVLEHLVVGRL---KAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASL--DDE 821 (1460)
Q Consensus 747 ~~K~~L~~~Vig~~---~~~~~~~~el~~ll~~ga~~lf~~~~~e~~~~~~i~~~d~~id~il~r~~~~~~~~~~--~~~ 821 (1460)
.+|+.|+..|++.. ....+++++|.+|+++|++.+|+..+ ..++|+|||.||+|++..+.+... ...
T Consensus 610 ~~Kl~Ld~~Vi~~g~~~~~~~~~~~eL~~ll~~ga~~~f~~~~--------~~~~~~did~il~~~~~~~~~~~~~~~~~ 681 (1033)
T PLN03142 610 YKKLALDALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKD--------STITDEDIDRIIAKGEEATAELDAKMKKF 681 (1033)
T ss_pred HHHHHHHHHHHhcCcccccccCCHHHHHHHHHhChHHhhhccC--------CCCCHHHHHHHHHhcHHHHHHHHHHHHHh
Confidence 99999999999543 23568899999999999999996443 135899999999999876654221 000
Q ss_pred chhhHHhHhhhh----cccchhHHHHHHHHHHHHHHHhhccCCCCccchhhHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 000500 822 DEDGFLKAFKVA----NFEYIEEVEAAAEEEAQKLAAENKSSMSNSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQ 897 (1460)
Q Consensus 822 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~r~~ 897 (1460)
..+. + .|++. -|++..+......+ -.|.+ .....++.++||.||+
T Consensus 682 ~~~~-~-~f~~~~~~~~~~~~g~~~~~~~~-------------------~~~~~----------~~~~~~~~~~~re~~~ 730 (1033)
T PLN03142 682 TEDA-I-KFKMDDTAELYDFDDEDDKDENK-------------------LDFKK----------IVSDNWIDPPKRERKR 730 (1033)
T ss_pred chhh-h-cccccCCcceeeecCccccchhh-------------------hhHhh----------hccccccccchhhhhc
Confidence 1111 1 23322 12221110000000 00000 0112344555666654
Q ss_pred ccccchhhcccccccCCCCcccccccccCCCCCCCCCCCCCCCCc-----------------------------------
Q 000500 898 MVSVEEDDLAGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPN----------------------------------- 942 (1460)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 942 (1460)
.+.. |.+|.+.+..+.. ..+..++.|+
T Consensus 731 ~~~~----------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~q~~~~~~l~~l~~~e~~~~~~~~~~~~~ 792 (1033)
T PLN03142 731 NYSE----------------SEYFKQAMRQGAP--AKPKEPRIPRMPQLHDFQFFNVQRLTELYEKEVRYLMQAHQKGQL 792 (1033)
T ss_pred ccch----------------hHHHHHHHhcCCc--ccCCCCCCCCCCCCccccCCCHHHHHHHHHHHHHHHhccccCCch
Confidence 3321 1122222111110 0000011000
Q ss_pred --cccccCCCCCCCCCcccc---ccchhhcCCChHHHHH---HHHHHHhcCCCCcchhhhchhhcCCCHHHHHHHHHHHH
Q 000500 943 --KKRSRVDSMEPPPLMEGE---GRSFRVLGFSQNQRAA---FVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFL 1014 (1460)
Q Consensus 943 --~~~~~~~~~~~~~L~~~e---~~~l~v~GF~~w~Rr~---Fv~a~~KyG~~~~~~~~ia~el~~Ks~eEvk~Ya~lF~ 1014 (1460)
........+...|||++| +++|+.+||++|+||+ ||++|.||||.++ ..||.++.+||++||++|+++||
T Consensus 793 ~~~~~~~~~~~~~~~lt~~e~~~k~~l~~~gf~~w~~~~f~~f~~~~~~~gr~~~--~~i~~~~~~k~~~ev~~y~~~f~ 870 (1033)
T PLN03142 793 KDTIDVAEPEEPGDPLTAEEQEEKEQLLEEGFSTWSRRDFNAFIRACEKYGRNDI--KSIASEMEGKTEEEVERYAKVFW 870 (1033)
T ss_pred hhhhhhccccccCCCCCHHHHHHHHHHHhcCcCcccHHHHHHHHHHHHHhCHhHH--HHHHHHhcCCCHHHHHHHHHHHH
Confidence 000011223457899887 5799999999999995 6889999999876 68999999999999999999999
Q ss_pred HhhhhccCCCCCccCCCCcCcchhhHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCCCCccChHHHHHHHH
Q 000500 1015 THITEDITDSPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLR 1094 (1460)
Q Consensus 1015 ~~~~E~i~d~e~~~d~i~k~~~k~~~vl~Ri~~~~ll~~Kv~~~~~~p~~~~~~~~l~~~y~~~~~~~~w~~eeD~~LL~ 1094 (1460)
+||.| ++||++++..|++|+.++++. ...+.+|+.||+.|. +| + .+|.++|+ .++++.|++++||||||
T Consensus 871 ~~~~~-~~~~~~~~~~ie~~e~~~~~~---~~~~~~~~~k~~~~~-~p---~--~~l~~~~~-~~~~~~~~~~~d~~~~~ 939 (1033)
T PLN03142 871 ERYKE-LNDYDRIIKNIERGEARISRK---DEIMKAIGKKLDRYK-NP---W--LELKIQYG-QNKGKLYNEECDRFMLC 939 (1033)
T ss_pred Hhhhh-hccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcc-Cc---H--HHceeecC-CCCCCcCCHHHHHHHHH
Confidence 99996 999999999999999887663 456899999999997 66 5 56888996 46789999999999999
Q ss_pred HHHHhccchhHHhhhCc--------ccchHHHHHHhhcCCCCCCCC
Q 000500 1095 AVLKHGYGRWQAIVDDK--------DLKVQEVICQELNLPFINLPV 1132 (1460)
Q Consensus 1095 gi~k~GyG~We~Ik~D~--------~l~l~~~i~~e~~~~~~~~~~ 1132 (1460)
++|+||||+|+.|+.+. +|++.++..+|+..+|.+++.
T Consensus 940 ~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~ 985 (1033)
T PLN03142 940 MVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR 985 (1033)
T ss_pred HHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence 99999999999987665 788888888999999987654
No 4
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.2e-95 Score=882.59 Aligned_cols=506 Identities=44% Similarity=0.723 Sum_probs=446.9
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhC--CCCcEEEEEccccHHHHH
Q 000500 272 QQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWE 349 (1460)
Q Consensus 272 ~~~~~~P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~--~~~p~LIVvP~sll~qW~ 349 (1460)
.....||..+.||+|++||+.||.||..++.++-+||||||||||||||+|+++.||.+. ..||+|||||+++|.||.
T Consensus 381 E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~ 460 (1157)
T KOG0386|consen 381 ENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWS 460 (1157)
T ss_pred hccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCch
Confidence 456789999999999999999999999999999999999999999999999999999874 457999999999999999
Q ss_pred HHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcc
Q 000500 350 REFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (1460)
Q Consensus 350 ~E~~kw~P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w 429 (1460)
.||.+|+|.+..+.|.|+++.|..+..- ...++|+|++|||+.+.++...|.+|.|
T Consensus 461 ~Ef~kWaPSv~~i~YkGtp~~R~~l~~q------------------------ir~gKFnVLlTtyEyiikdk~lLsKI~W 516 (1157)
T KOG0386|consen 461 SEFPKWAPSVQKIQYKGTPQQRSGLTKQ------------------------QRHGKFNVLLTTYEYIIKDKALLSKISW 516 (1157)
T ss_pred hhccccccceeeeeeeCCHHHHhhHHHH------------------------HhcccceeeeeeHHHhcCCHHHHhccCC
Confidence 9999999999999999999999865432 1237999999999999999999999999
Q ss_pred eEEEeccccccCCcchHHHHHHH-hccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh--------
Q 000500 430 QCMIVDEGHRLKNKDSKLFSSLK-QYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN-------- 500 (1460)
Q Consensus 430 ~~VIvDEAHrlKN~~Sk~~~al~-~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~-------- 500 (1460)
.++||||+||+||..+++...+. .+.+.+||||||||+||++.|||+||+||.|.+|.+...|.+||...-
T Consensus 517 ~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~e 596 (1157)
T KOG0386|consen 517 KYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVE 596 (1157)
T ss_pred cceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCccc
Confidence 99999999999999999999998 778999999999999999999999999999999999999999996421
Q ss_pred --hH---HHHHHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHH--hcCCchhhHHHHH
Q 000500 501 --QE---EQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILT--RRGGAQISLINVV 573 (1460)
Q Consensus 501 --~~---~~i~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~--~~~~~~~~l~nil 573 (1460)
.+ -.+.+||++|+||+|||.|++|+..||.+++.++.|.||..|+.+|+.+.....-.+. .+.+....++|.+
T Consensus 597 LteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~i 676 (1157)
T KOG0386|consen 597 LTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTI 676 (1157)
T ss_pred ccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHh
Confidence 11 2578999999999999999999999999999999999999999999998654322221 2445567899999
Q ss_pred HHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEE
Q 000500 574 MELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYER 653 (1460)
Q Consensus 574 ~~LRk~c~hP~L~~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~r 653 (1460)
|+|||||||||++..++......... ..|+..|||+.+|+++|++|++.|||||+|+||++++++|++||..++++|.|
T Consensus 677 mqLRKiCNHP~lf~~ve~~~~~~~~~-~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlR 755 (1157)
T KOG0386|consen 677 MQLRKLCNHPYLFANVENSYTLHYDI-KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLR 755 (1157)
T ss_pred HHHHHhcCCchhhhhhccccccccCh-hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheee
Confidence 99999999999998776554433222 67899999999999999999999999999999999999999999999999999
Q ss_pred EecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEe
Q 000500 654 IDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 733 (1460)
Q Consensus 654 idGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLv 733 (1460)
+||+|+.++|-..++.||.|++..|+||+||+|||+|+||++||||||||+||||+.+.||.+|||||||++.|.|+||+
T Consensus 756 LDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 756 LDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred ecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHhcc--ccccCCCHHHHHHHHHhchhhhhcccCcCCCCcccccCCHHHHHHHhccCC
Q 000500 734 TRGSIEERMMQMTKKKMVLEHLVVGR--LKAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQ 810 (1460)
Q Consensus 734 t~~TiEE~I~e~a~~K~~L~~~Vig~--~~~~~~~~~el~~ll~~ga~~lf~~~~~e~~~~~~i~~~d~~id~il~r~~ 810 (1460)
+.++|||.|++.+..|+..+..|+.. ++. .-..++=+.+|. .+...++++.+ .-.-+++.|..+|.|++
T Consensus 836 tv~sveE~il~~a~~Kl~~d~kviqag~fdn-~st~~eR~~~Le----~~l~~~~~~~~---~~v~~~~~ln~~larse 906 (1157)
T KOG0386|consen 836 TVNSVEEKILAEAFYKLDVDGKVIQAGKFDN-KSTAEEREMFLE----QLLEMEGDEEE---EEVPDDEVLNSMLARSE 906 (1157)
T ss_pred hhhHHHHHHHHHHHHhcCchHhhhhcccccC-CCcHHHHHHHHH----HHHhCCCcccc---ccCCcHHHHHHHHhcch
Confidence 99999999999999999999999944 332 233333333332 23333332222 12346778999998875
No 5
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-92 Score=843.87 Aligned_cols=463 Identities=44% Similarity=0.668 Sum_probs=406.7
Q ss_pred ccCCCCCC-CCCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCC-CCcEEEEEccccHHHHHHH
Q 000500 274 YEHSPEFL-SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWERE 351 (1460)
Q Consensus 274 ~~~~P~~~-~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~-~~p~LIVvP~sll~qW~~E 351 (1460)
+..||..+ ++.+|+|||+-|||||.-.+.++-+||||||||||||+|+|||+++|...+ .||+|||||.||+.||.+|
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleNWlrE 466 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLENWLRE 466 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHHHHHH
Confidence 34577766 578999999999999999999999999999999999999999999999875 4699999999999999999
Q ss_pred HHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh---hhcccCCCc
Q 000500 352 FATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL---DSASLKPIK 428 (1460)
Q Consensus 352 ~~kw~P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~---d~~~L~~i~ 428 (1460)
|.+|||.++|..|+|+...|..+|..-- .....|+|+||||..+.. ++.+|+..+
T Consensus 467 f~kwCPsl~Ve~YyGSq~ER~~lR~~i~----------------------~~~~~ydVllTTY~la~~~kdDRsflk~~~ 524 (941)
T KOG0389|consen 467 FAKWCPSLKVEPYYGSQDERRELRERIK----------------------KNKDDYDVLLTTYNLAASSKDDRSFLKNQK 524 (941)
T ss_pred HHHhCCceEEEeccCcHHHHHHHHHHHh----------------------ccCCCccEEEEEeecccCChHHHHHHHhcc
Confidence 9999999999999999999998886411 123489999999999864 688999999
Q ss_pred ceEEEeccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCCh-HHHHHHHhhhh-------
Q 000500 429 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSL-EEFQEEFKDIN------- 500 (1460)
Q Consensus 429 w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~-~~F~~~f~~~~------- 500 (1460)
|+++|.||+|.|||..|.+++.|..+++++||||||||+|||+.||++||.|+.|..|.+. +++..-|....
T Consensus 525 ~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e 604 (941)
T KOG0389|consen 525 FNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIE 604 (941)
T ss_pred ccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999744 56666664322
Q ss_pred ----hHHHHHHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCc--hhhHHHHHH
Q 000500 501 ----QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGA--QISLINVVM 574 (1460)
Q Consensus 501 ----~~~~i~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~--~~~l~nil~ 574 (1460)
..+.+.+-..+++||+|||.|.+|+++||||..++.+|+|+..|+.+|..++......++....+ ..+ .+++|
T Consensus 605 ~~~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~-~~vlm 683 (941)
T KOG0389|consen 605 NALLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKS-GNVLM 683 (941)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcccccccccccc-chHHH
Confidence 24578899999999999999999999999999999999999999999999987653333322222 112 57999
Q ss_pred HHHHHhCCcccccCCCCC---------------cccch-----HH--------H----------------HHHHhhhhHH
Q 000500 575 ELRKLCCHPYMLEGVEPD---------------IEDTN-----ES--------F----------------KQLLESSGKL 610 (1460)
Q Consensus 575 ~LRk~c~hP~L~~~~e~~---------------~~~~~-----~~--------~----------------~~lv~~SgKl 610 (1460)
+|||+++||.|+.....+ ....+ +. + ..++-.|||.
T Consensus 684 qlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~ 763 (941)
T KOG0389|consen 684 QLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKC 763 (941)
T ss_pred HHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhH
Confidence 999999999988543211 00000 00 0 0124469999
Q ss_pred HHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccc
Q 000500 611 QLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLG 690 (1460)
Q Consensus 611 ~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~G 690 (1460)
..|.+||+++++.|+||||||||+.|||||+-+|...|+.|+|+||+|....||.+|+.||.+ .+.|||||||+|||.|
T Consensus 764 r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d-~difVFLLSTKAGG~G 842 (941)
T KOG0389|consen 764 RKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTD-KDIFVFLLSTKAGGFG 842 (941)
T ss_pred hHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccC-CceEEEEEeeccCcce
Confidence 999999999999999999999999999999999999999999999999999999999999984 5679999999999999
Q ss_pred cCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCCHHHHHHHHHHHHHHHHHHHhccc
Q 000500 691 INLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRL 760 (1460)
Q Consensus 691 INL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~a~~K~~L~~~Vig~~ 760 (1460)
|||++||+|||+|.++||..|.||.+||||+||+|+|+|||||+++||||.|++.+++|+.|+..+.+..
T Consensus 843 INLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~ 912 (941)
T KOG0389|consen 843 INLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDG 912 (941)
T ss_pred ecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999997554
No 6
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=1.2e-91 Score=845.76 Aligned_cols=472 Identities=40% Similarity=0.718 Sum_probs=418.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhC--CCCcEEEEEccccHHHHHHHHHHHCC
Q 000500 280 FLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWEREFATWAP 357 (1460)
Q Consensus 280 ~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~--~~~p~LIVvP~sll~qW~~E~~kw~P 357 (1460)
++-.|.||.||..|++||..+|.++-|||||||||||||||+|+|+++|... +.||+|||||.+++.||.-||++|||
T Consensus 610 sLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcP 689 (1958)
T KOG0391|consen 610 SLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCP 689 (1958)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCC
Confidence 3345899999999999999999999999999999999999999999999754 56799999999999999999999999
Q ss_pred CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEeccc
Q 000500 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEG 437 (1460)
Q Consensus 358 ~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEA 437 (1460)
.++++.|+|+...|+.-|+ +|. ....|||+||||..+..+...|+...|.|+|+|||
T Consensus 690 glKILTYyGs~kErkeKRq-gW~----------------------kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEa 746 (1958)
T KOG0391|consen 690 GLKILTYYGSHKERKEKRQ-GWA----------------------KPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEA 746 (1958)
T ss_pred cceEeeecCCHHHHHHHhh-ccc----------------------CCCeeEEeehhhHHHHhHHHHHHhhccceeehhhh
Confidence 9999999999999876443 121 23579999999999999999999999999999999
Q ss_pred cccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh----------hHHHHHH
Q 000500 438 HRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN----------QEEQISR 507 (1460)
Q Consensus 438 HrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~----------~~~~i~~ 507 (1460)
|+|||..|+.+++|..+++.+||||||||+||++.|||+||+||+|..|.+...|..||.+.- ....+.+
T Consensus 747 qnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn~klV~R 826 (1958)
T KOG0391|consen 747 QNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYNHKLVIR 826 (1958)
T ss_pred hhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997521 2467899
Q ss_pred HHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccccc
Q 000500 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (1460)
Q Consensus 508 L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~ 587 (1460)
||++|+||+|||+|.||+++||.|.|++|+|.||..|+.+|+.++.+.-..-+-..|+-++.+|++|+||||||||-||+
T Consensus 827 LHkVlrPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfE 906 (1958)
T KOG0391|consen 827 LHKVLRPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFE 906 (1958)
T ss_pred HHHHhHHHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcCCCCcCC
Confidence 99999999999999999999999999999999999999999999887655555567788899999999999999997752
Q ss_pred CCC-----------------------------C---------------Cc------------------------------
Q 000500 588 GVE-----------------------------P---------------DI------------------------------ 593 (1460)
Q Consensus 588 ~~e-----------------------------~---------------~~------------------------------ 593 (1460)
.-- + ..
T Consensus 907 pRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~ 986 (1958)
T KOG0391|consen 907 PRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTF 986 (1958)
T ss_pred CCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCccc
Confidence 100 0 00
Q ss_pred -----------------cc--------------------------------ch---------------------------
Q 000500 594 -----------------ED--------------------------------TN--------------------------- 597 (1460)
Q Consensus 594 -----------------~~--------------------------------~~--------------------------- 597 (1460)
.. .+
T Consensus 987 ~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~ 1066 (1958)
T KOG0391|consen 987 AGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVP 1066 (1958)
T ss_pred cccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeecccc
Confidence 00 00
Q ss_pred ----------------------------------------------------------------------HHHH------
Q 000500 598 ----------------------------------------------------------------------ESFK------ 601 (1460)
Q Consensus 598 ----------------------------------------------------------------------~~~~------ 601 (1460)
+.+.
T Consensus 1067 t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~ 1146 (1958)
T KOG0391|consen 1067 TQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVN 1146 (1958)
T ss_pred ccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhcc
Confidence 0000
Q ss_pred ------------------------------------------HHH-----------------------------------
Q 000500 602 ------------------------------------------QLL----------------------------------- 604 (1460)
Q Consensus 602 ------------------------------------------~lv----------------------------------- 604 (1460)
.+|
T Consensus 1147 APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~ 1226 (1958)
T KOG0391|consen 1147 APVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQ 1226 (1958)
T ss_pred CcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHH
Confidence 000
Q ss_pred ------------------------------hhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEE
Q 000500 605 ------------------------------ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERI 654 (1460)
Q Consensus 605 ------------------------------~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ri 654 (1460)
..+||++.|.-||+.|+..|||||||+||+.|||+|+.||.++||-|.||
T Consensus 1227 qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RL 1306 (1958)
T KOG0391|consen 1227 QLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRL 1306 (1958)
T ss_pred HHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEe
Confidence 02789999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEec
Q 000500 655 DGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLIT 734 (1460)
Q Consensus 655 dGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt 734 (1460)
||+++.++||.++++||+ +...||||||||.||+||||+.||||||||+||||..|.||++|||||||++.|+|||||+
T Consensus 1307 Dg~t~vEqRQaLmerFNa-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLIS 1385 (1958)
T KOG0391|consen 1307 DGNTSVEQRQALMERFNA-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLIS 1385 (1958)
T ss_pred cCCccHHHHHHHHHHhcC-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeec
Confidence 999999999999999998 5678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhccc--cccCCCHHHHHHHHH
Q 000500 735 RGSIEERMMQMTKKKMVLEHLVVGRL--KAQNINQEELDDIIR 775 (1460)
Q Consensus 735 ~~TiEE~I~e~a~~K~~L~~~Vig~~--~~~~~~~~el~~ll~ 775 (1460)
+.||||.|+..+.+|..|+.+++++. ...-+.+..+.+||.
T Consensus 1386 e~TIEeniLkkanqKr~L~evaiqggdfTt~ff~q~ti~dLFd 1428 (1958)
T KOG0391|consen 1386 ERTIEENILKKANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFD 1428 (1958)
T ss_pred cchHHHHHHhhhhHHHHHHHHhhccCCccHHHHhhhhHHHHhc
Confidence 99999999999999999999999543 334455666666653
No 7
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=6e-93 Score=869.07 Aligned_cols=622 Identities=51% Similarity=0.851 Sum_probs=544.2
Q ss_pred ccccccccccccCCCCCeeecCCCCCcccccccCCCCCCCCCCCCCCCccCCCCC--ccccccccccccCccC---CC-C
Q 000500 46 RIDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN--DIDKILDCEMRPTVAG---DS-D 119 (1460)
Q Consensus 46 ~~~~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~--diekiL~~R~~p~~~~---~~-~ 119 (1460)
+.+.+...|.+|+++|++++|++|+.+||.+|+.||+...|.+.|.|++|..+.+ .+.+|+.|+|+|+... .. .
T Consensus 42 ~~~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~~~ 121 (696)
T KOG0383|consen 42 WDDAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKNAGKIEKILGWRWKPTPKPREGNQGV 121 (696)
T ss_pred cchhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCCcccccccceeEecCCCCccccCcCc
Confidence 5567788999999999999999999999999999999999998899999977655 7999999999988643 11 1
Q ss_pred cccccchhhhHHHhhhhccCCCcccccccchhhHHHhhhcChhHHHHHHhHhhhhccCCC-----------------c--
Q 000500 120 VSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSNNN-----------------A-- 180 (1460)
Q Consensus 120 ~~~~~~k~~~~~EYlVKWkg~Sy~HctWvpe~~L~~~~~~~~~~k~kl~~f~kk~~~~~~-----------------~-- 180 (1460)
...........++|+|||+|.||+||.|+++.++.......+ .+|......... .
T Consensus 122 ~~~~~~~~~~~re~~vk~qg~s~~~c~~~~e~~~q~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~k~~~~a~~ 195 (696)
T KOG0383|consen 122 ISPRRSNGIVEREFFVKWQGLSYWHCSWKSELLLQNPLNTLP------VELQRKHDTDQKPEAEIGVTRDKGKLVPYADL 195 (696)
T ss_pred cCCcccccchhhhcccccccCCccchhHHHHHHhhhhcccch------HhhhhhhhcccCccccccccccCccccccccc
Confidence 122234456679999999999999999999999886643222 233322111100 0
Q ss_pred hhh--hccCCCCccchhhhhhhc-cCCCCceEEEEEeccccccccccccc-ccccchHHHHHHHHhhhcccccccCcCCC
Q 000500 181 EED--FVAIRPEWTTVDRILACR-GEDDEKEYLVKYKELSYDECYWEYES-DISAFQPEIERFIKIQSRSHRSSCNKQKS 256 (1460)
Q Consensus 181 ~ed--~~~i~pe~~~veRII~~r-~~~~~~eyLVKWkgL~Y~~~TWE~~~-~~~~~~~~i~~f~~~~~~~~~~~~~~~~~ 256 (1460)
++. .+.++|+|+++.||+.++ ...+...|+|||+.|+|++++|+.+. ++..++..+++|....... .... .
T Consensus 196 ~~r~~~~~iKpe~~~i~rii~~~~s~~~~~~~~Vk~k~l~~d~~~~e~~~~~ip~~~~~~qe~~~~~~~~-~~~k--~-- 270 (696)
T KOG0383|consen 196 EERFLLYGIKPEWMPIARIINRRSSQKGATDYLVKWKELSYDEQEWEVEDPDIPGYSSAGQEAWHHREKP-TVSK--D-- 270 (696)
T ss_pred hhhhhheeccccccccchhhhhhcccccceeeEeeeccCCccccCCCcCCCCcccCcccccccccccCcc-cccc--c--
Confidence 111 246789999999999999 45678899999999999999999877 7788888899888755431 1000 0
Q ss_pred CCccccccCCCCcccccccCCCCCCC--CCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCC-
Q 000500 257 SPQDVTESTKKPKEFQQYEHSPEFLS--GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI- 333 (1460)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~P~~~~--g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~- 333 (1460)
. . .........+..+|.++. ++.|++||.+|+||++..|..+..+|||||||+|||++++.|+..++....
T Consensus 271 ----~-~-~~~~~~~v~~~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~ 344 (696)
T KOG0383|consen 271 ----L-K-SNTVDDPVPYEDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHS 344 (696)
T ss_pred ----c-c-ccccCCCCCcccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCC
Confidence 0 0 012345677889999986 599999999999999999999999999999999999999999999988753
Q ss_pred -CcEEEEEccccHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEe
Q 000500 334 -SPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLT 412 (1460)
Q Consensus 334 -~p~LIVvP~sll~qW~~E~~kw~P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvIt 412 (1460)
+|+||++|.+++.+|.+|+..|+|.+.++.|+|+.+.|.+++++++.+.+...+.. ............+|+|.++
T Consensus 345 ~~P~Lv~ap~sT~~nwe~e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~----~~i~~~~~~s~~k~~vl~~ 420 (696)
T KOG0383|consen 345 PGPPLVVAPLSTIVNWEREFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSS----PKISEMKTESSAKFHVLLP 420 (696)
T ss_pred CCCceeeccCccccCCCCchhccCCCcccccCCCCccchhhhhcccccccccccccC----CccccccchhhcccccCCC
Confidence 49999999999999999999999999999999999999999999998877653322 2222333456689999999
Q ss_pred cHHHHHhhhcccCCCcceEEEeccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHH
Q 000500 413 SYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEF 492 (1460)
Q Consensus 413 SYe~l~~d~~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F 492 (1460)
+|+++..+...+..+.|.++|+||+||+||..|+++..+..+...++++|||||+|||+.|||++|+||.|+.|.+...|
T Consensus 421 s~~~~~~~~~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f 500 (696)
T KOG0383|consen 421 SYETIEIDQSILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWF 500 (696)
T ss_pred chhhcccCHHHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHH
Q 000500 493 QEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINV 572 (1460)
Q Consensus 493 ~~~f~~~~~~~~i~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~ni 572 (1460)
.+.|.++...+.+..||.++.|+|+||.|.||++.+|+|.+.+++++|++.|+++|+.++++++..+.. ++...+++|+
T Consensus 501 ~e~~~d~~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~-~~~~~s~~n~ 579 (696)
T KOG0383|consen 501 LEEFHDISCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA-GVHQYSLLNI 579 (696)
T ss_pred hhhcchhhHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh-cchhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 6778899999
Q ss_pred HHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEE
Q 000500 573 VMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYE 652 (1460)
Q Consensus 573 l~~LRk~c~hP~L~~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ 652 (1460)
+|+|||+|+|||+++..++...........++.+|+|+.+|.+|+++++..|||||||+||+.|||+|+++|...+ .|.
T Consensus 580 ~mel~K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~ 658 (696)
T KOG0383|consen 580 VMELRKQCNHPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYE 658 (696)
T ss_pred HHHHHHhhcCcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cce
Confidence 9999999999999999777666666777889999999999999999999999999999999999999999999999 999
Q ss_pred EEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccc
Q 000500 653 RIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLG 690 (1460)
Q Consensus 653 ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~G 690 (1460)
||||.++..+|+.+|++||++++..||||+||||||+|
T Consensus 659 r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 659 RIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred eccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99999999999999999999999999999999999998
No 8
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=3e-90 Score=805.85 Aligned_cols=457 Identities=45% Similarity=0.763 Sum_probs=411.1
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCC--CCcEEEEEccccHHHHHHH
Q 000500 274 YEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNWERE 351 (1460)
Q Consensus 274 ~~~~P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~--~~p~LIVvP~sll~qW~~E 351 (1460)
.-.||..+. ++|+.||+.|+|||..+|.+|.+||||||||||||+|+|++|++|.+.. .||||||+|.|+|.||..|
T Consensus 557 tV~qPkil~-ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqE 635 (1185)
T KOG0388|consen 557 TVPQPKILK-CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQE 635 (1185)
T ss_pred eccCchhhh-hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHH
Confidence 346788776 8999999999999999999999999999999999999999999998753 5799999999999999999
Q ss_pred HHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceE
Q 000500 352 FATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQC 431 (1460)
Q Consensus 352 ~~kw~P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~ 431 (1460)
|.+|+|.++++.|.|+..+|.+++.+ +.+.+ .......|||+||||+++..|...|.+++|.+
T Consensus 636 isrFlP~~k~lpywGs~~eRkiLrKf--w~rKn---------------mY~rna~fhVviTSYQlvVtDeky~qkvKWQY 698 (1185)
T KOG0388|consen 636 ISRFLPSFKVLPYWGSPSERKILRKF--WNRKN---------------MYRRNAPFHVVITSYQLVVTDEKYLQKVKWQY 698 (1185)
T ss_pred HHHhCccceeecCcCChhhhHHHHHh--cchhh---------------hhccCCCceEEEEeeeeeechHHHHHhhhhhh
Confidence 99999999999999999999999875 11111 01234689999999999999999999999999
Q ss_pred EEeccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhh-h---------hh
Q 000500 432 MIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD-I---------NQ 501 (1460)
Q Consensus 432 VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~-~---------~~ 501 (1460)
+|+|||+.||+..|..++.|..|+++.||||||||+||++.|||+||||++|..|.+..+|.+||.. + -.
T Consensus 699 MILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tln 778 (1185)
T KOG0388|consen 699 MILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLN 778 (1185)
T ss_pred eehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999963 1 23
Q ss_pred HHHHHHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhC
Q 000500 502 EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (1460)
Q Consensus 502 ~~~i~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~ 581 (1460)
+.++.+||.+|+||||||.|++|...|..+.++.|+|.||..|+.+|+.|..... ...+.+++|+|||+||
T Consensus 779 eqqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS---------~~E~~~~vmQlrKVCN 849 (1185)
T KOG0388|consen 779 EQQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS---------SMEMENLVMQLRKVCN 849 (1185)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh---------HHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999876543 1223469999999999
Q ss_pred CcccccCCCCCcc-------------------------------------------------------------------
Q 000500 582 HPYMLEGVEPDIE------------------------------------------------------------------- 594 (1460)
Q Consensus 582 hP~L~~~~e~~~~------------------------------------------------------------------- 594 (1460)
||-||+..++...
T Consensus 850 HPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~ 929 (1185)
T KOG0388|consen 850 HPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLS 929 (1185)
T ss_pred ChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccce
Confidence 9988754332100
Q ss_pred -----------cch------------------HH----------------------------------------------
Q 000500 595 -----------DTN------------------ES---------------------------------------------- 599 (1460)
Q Consensus 595 -----------~~~------------------~~---------------------------------------------- 599 (1460)
... +.
T Consensus 930 ~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~ 1009 (1185)
T KOG0388|consen 930 LEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHI 1009 (1185)
T ss_pred eeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCc
Confidence 000 00
Q ss_pred ----------HHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHH
Q 000500 600 ----------FKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1460)
Q Consensus 600 ----------~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~ 669 (1460)
....+..|||+..|+.||.+|++.|||||+|.||++|+|+|++||..+||.|.|+||+.+..+|..++.+
T Consensus 1010 pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrD 1089 (1185)
T KOG0388|consen 1010 PLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRD 1089 (1185)
T ss_pred ccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhh
Confidence 0011335899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCCHHHHHHHHHHHH
Q 000500 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKK 749 (1460)
Q Consensus 670 Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~a~~K 749 (1460)
|++ ++.||||+||||||+||||++||||||||+||||..+.||++||||.||++.|+||||++++||||+|++++.+|
T Consensus 1090 wQ~--sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK 1167 (1185)
T KOG0388|consen 1090 WQA--SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQK 1167 (1185)
T ss_pred ccC--CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhH
Confidence 997 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 000500 750 MVLEHLVVGR 759 (1460)
Q Consensus 750 ~~L~~~Vig~ 759 (1460)
....++|+.+
T Consensus 1168 ~~vQq~Vm~G 1177 (1185)
T KOG0388|consen 1168 DEVQQMVMHG 1177 (1185)
T ss_pred HHHHHHHHcC
Confidence 9999999843
No 9
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=8.9e-88 Score=803.45 Aligned_cols=485 Identities=37% Similarity=0.634 Sum_probs=413.4
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCC--CCcEEEEEccccHHHHHHHH
Q 000500 275 EHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNWEREF 352 (1460)
Q Consensus 275 ~~~P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~--~~p~LIVvP~sll~qW~~E~ 352 (1460)
-..|.++. ..|+|||.+||+||..+++++.||||+||||||||||+|+||+.|++.+ .+|.|||||.+++.||.+||
T Consensus 196 ~~vPg~I~-~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~ 274 (923)
T KOG0387|consen 196 FKVPGFIW-SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEF 274 (923)
T ss_pred ccccHHHH-HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHH
Confidence 34566665 5799999999999999999999999999999999999999999998763 46999999999999999999
Q ss_pred HHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEE
Q 000500 353 ATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCM 432 (1460)
Q Consensus 353 ~kw~P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~V 432 (1460)
.+|+|.++|.+|||+...-. ++.+.....+.. ...+.....-+|+||||+.++.....+..+.|+++
T Consensus 275 ~~w~p~~rv~ilh~t~s~~r----~~~~~~~~~~~~---------~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ 341 (923)
T KOG0387|consen 275 QTWWPPFRVFILHGTGSGAR----YDASHSSHKKDK---------LLIRKVATDGGILITTYDGFRIQGDDLLGILWDYV 341 (923)
T ss_pred HHhCcceEEEEEecCCcccc----cccchhhhhhhh---------hheeeecccCcEEEEehhhhcccCcccccccccEE
Confidence 99999999999999876321 111100000000 00011223557999999999999999999999999
Q ss_pred EeccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh------------
Q 000500 433 IVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN------------ 500 (1460)
Q Consensus 433 IvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~------------ 500 (1460)
|+||+|+|||++|+++.+|+.+.+.+|++|||||+|||+.|||+|+.|+.|+.+++...|.+.|....
T Consensus 342 ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~q 421 (923)
T KOG0387|consen 342 ILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQ 421 (923)
T ss_pred EecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999996421
Q ss_pred ---hHHHHHHHHHhhchhhhhhhhhhhhh-cCCCceeEEEeecCCHHHHHHHHHHHHHHH--HHHHhcCCchhhHHHHHH
Q 000500 501 ---QEEQISRLHRMLAPHLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNY--QILTRRGGAQISLINVVM 574 (1460)
Q Consensus 501 ---~~~~i~~L~~~L~p~~LRR~K~dv~~-~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~--~~l~~~~~~~~~l~nil~ 574 (1460)
...-...|+.+|.||+|||+|+||.. .||.|.+++|+|.||+.|+.+|..++.... .+++ .....+.-+.
T Consensus 422 v~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~n----g~~~~l~Gi~ 497 (923)
T KOG0387|consen 422 VQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILN----GKRNCLSGID 497 (923)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHc----CCccceechH
Confidence 12345679999999999999999998 999999999999999999999999986432 2222 2223344456
Q ss_pred HHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHH-hcCCeEEE
Q 000500 575 ELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT-FKKWQYER 653 (1460)
Q Consensus 575 ~LRk~c~hP~L~~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~-~~g~~~~r 653 (1460)
-||++||||-|+..-..... ........+..||||.+|.++|...+.+|+|||+|||...|||||+.+|. ..||.|+|
T Consensus 498 iLrkICnHPdll~~~~~~~~-~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylR 576 (923)
T KOG0387|consen 498 ILRKICNHPDLLDRRDEDEK-QGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLR 576 (923)
T ss_pred HHHhhcCCcccccCcccccc-cCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEE
Confidence 69999999999976321110 01111245778999999999999999999999999999999999999999 79999999
Q ss_pred EecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEe
Q 000500 654 IDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 733 (1460)
Q Consensus 654 idGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLv 733 (1460)
+||.|+...|+.+|++||++. ..+||||+|++||+|+||+.||.||||||+|||+.|.||..||+||||+|.|.||||+
T Consensus 577 mDGtT~~~~R~~lVd~Fne~~-s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~ 655 (923)
T KOG0387|consen 577 MDGTTPAALRQKLVDRFNEDE-SIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLM 655 (923)
T ss_pred ecCCCccchhhHHHHhhcCCC-ceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEe
Confidence 999999999999999999855 5688999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHh-ccccccCCCHHHHHHHHHhchh
Q 000500 734 TRGSIEERMMQMTKKKMVLEHLVV-GRLKAQNINQEELDDIIRYGSK 779 (1460)
Q Consensus 734 t~~TiEE~I~e~a~~K~~L~~~Vi-g~~~~~~~~~~el~~ll~~ga~ 779 (1460)
+.|||||+||.++--|..|.+.++ +.....-+...+|.++|.++..
T Consensus 656 t~gTIEEkiY~rQI~Kq~Ltn~il~~p~q~RfF~~~dl~dLFsl~~~ 702 (923)
T KOG0387|consen 656 TAGTIEEKIYHRQIFKQFLTNRILKNPEQRRFFKGNDLHDLFSLKDF 702 (923)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHhcCHHHhhhcccccHHHHhCCCCC
Confidence 999999999999999999999988 4445556778889998887653
No 10
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=2e-81 Score=769.30 Aligned_cols=465 Identities=37% Similarity=0.626 Sum_probs=404.6
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhC--------CCCcEEEEEccccHHHHHHHHHHH
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--------RISPHLVVAPLSTLRNWEREFATW 355 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~--------~~~p~LIVvP~sll~qW~~E~~kw 355 (1460)
..||.||.+|||||.++..-+-+|||||+||||||+|+|++++.=... ...|.|||||.++..+|..|+.+|
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHHHh
Confidence 579999999999999999999999999999999999999998753322 233899999999999999999999
Q ss_pred CCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEec
Q 000500 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1460)
Q Consensus 356 ~P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvD 435 (1460)
+|-++|+.|.|....|..+|.. ..+.+|+||||+.+++|...|.++.|.|+|+|
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q--------------------------~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLD 1107 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQ--------------------------YKNANIIVTSYDVVRNDVDYLIKIDWNYCVLD 1107 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhh--------------------------ccccceEEeeHHHHHHHHHHHHhcccceEEec
Confidence 9999999999999999877753 23568999999999999999999999999999
Q ss_pred cccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhh---------------h
Q 000500 436 EGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---------------N 500 (1460)
Q Consensus 436 EAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~---------------~ 500 (1460)
|+|-|||..++++++++.+.++|||+|||||+|||+.|||+|++||+|+.+++-..|.+.|... .
T Consensus 1108 EGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~Ea 1187 (1549)
T KOG0392|consen 1108 EGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEA 1187 (1549)
T ss_pred CcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999642 1
Q ss_pred hHHHHHHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHh-------cCC-chhhHHHH
Q 000500 501 QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTR-------RGG-AQISLINV 572 (1460)
Q Consensus 501 ~~~~i~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~-------~~~-~~~~l~ni 572 (1460)
+.-.++.||+.+=||||||+|.||+++||||..+-.+|+|++.|+++|+.+..+....... ..+ .....+..
T Consensus 1188 G~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqa 1267 (1549)
T KOG0392|consen 1188 GVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQA 1267 (1549)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHH
Confidence 2245788999999999999999999999999999999999999999999998873222211 111 24567788
Q ss_pred HHHHHHHhCCcccccCC-CCCcccchHHH------HHHHhhhhHHHHHHHHHHHHH--------------HcCceEEEEe
Q 000500 573 VMELRKLCCHPYMLEGV-EPDIEDTNESF------KQLLESSGKLQLLDKMMVKLK--------------EQGHRVLIYS 631 (1460)
Q Consensus 573 l~~LRk~c~hP~L~~~~-e~~~~~~~~~~------~~lv~~SgKl~~L~klL~~l~--------------~~g~KVLIFS 631 (1460)
+..|||.|+||.|.-.. .++........ -+-+..|+|+.+|..+|..+- -.+||+||||
T Consensus 1268 LqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFc 1347 (1549)
T KOG0392|consen 1268 LQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFC 1347 (1549)
T ss_pred HHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEee
Confidence 99999999999988543 22221111111 122678999999999998762 1479999999
Q ss_pred cchhhHHHHHHHHHhc---CCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCCh
Q 000500 632 QFQHMLDLLEDYLTFK---KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNP 708 (1460)
Q Consensus 632 q~~~~LdiLed~L~~~---g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP 708 (1460)
|+..|+|++++-|-.. .+.|.|+||++++.+|++++.+||.+++-. |+|++|.+||+|+|||.||||||++-||||
T Consensus 1348 QlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptID-vLlLTThVGGLGLNLTGADTVVFvEHDWNP 1426 (1549)
T KOG0392|consen 1348 QLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTID-VLLLTTHVGGLGLNLTGADTVVFVEHDWNP 1426 (1549)
T ss_pred eHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCcee-EEEEeeeccccccccCCCceEEEEecCCCc
Confidence 9999999999988553 567899999999999999999999987654 499999999999999999999999999999
Q ss_pred hhHHHHHHhhcccCCCCceEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcccc--ccCCCHHHHHHHHH
Q 000500 709 HADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK--AQNINQEELDDIIR 775 (1460)
Q Consensus 709 ~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~a~~K~~L~~~Vig~~~--~~~~~~~el~~ll~ 775 (1460)
.+|+|||+|||||||++.|+||||||+||+||+|+-.++-||..++.|++.-+ -..++-++|.++|.
T Consensus 1427 MrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNasl~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1427 MRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNASLETMDTDQLLDLFT 1495 (1549)
T ss_pred hhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhcccccccccCHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999996643 24566777777654
No 11
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=7.8e-70 Score=670.44 Aligned_cols=453 Identities=35% Similarity=0.552 Sum_probs=382.1
Q ss_pred CCCCHHHHHHHHHHHHhhh------cCCcEEEEecCCCCcHHHHHHHHHHHHhCCC------CcEEEEEccccHHHHHHH
Q 000500 284 GSLHPYQLEGLNFLRFSWS------KQTHVILADEMGLGKTIQSIAFLASLFGERI------SPHLVVAPLSTLRNWERE 351 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~------~~~~~ILADemGLGKTiqaIa~l~~L~~~~~------~p~LIVvP~sll~qW~~E 351 (1460)
..|||||.+|++||..+.. ..+|||+||+||+|||+|+|+||..+....+ ...|||||.+++.||.+|
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkkE 316 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKKE 316 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHHH
Confidence 5799999999999977664 4578999999999999999999999987643 378999999999999999
Q ss_pred HHHHCC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcc
Q 000500 352 FATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (1460)
Q Consensus 352 ~~kw~P--~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w 429 (1460)
|.+|.. .+....++|...+ ..+....+..-. ......-|++.||++++.....+....+
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~~~------------------~~~~~~~vli~sye~~~~~~~~il~~~~ 377 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKS-SWIKLKSILFLG------------------YKQFTTPVLIISYETASDYCRKILLIRP 377 (776)
T ss_pred HHHhccccccceeeeecccch-hhhhhHHHHHhh------------------hhheeEEEEeccHHHHHHHHHHHhcCCC
Confidence 999985 5777777777765 111111111000 0123456999999999999999999999
Q ss_pred eEEEeccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh---------
Q 000500 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN--------- 500 (1460)
Q Consensus 430 ~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~--------- 500 (1460)
++||+||+|++||..+.++++|..+.+.+||+|||||+||++.|+|++|+|..|+.+++...|...|....
T Consensus 378 glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s 457 (776)
T KOG0390|consen 378 GLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADAS 457 (776)
T ss_pred CeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999885321
Q ss_pred -----hHHHHHHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHH
Q 000500 501 -----QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVME 575 (1460)
Q Consensus 501 -----~~~~i~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~ 575 (1460)
.++.++.|..+...|++||+-....+.||++.+++|.|.+|+.|+.+|+.++........ .+ ..+..+..
T Consensus 458 ~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~-~~----~~l~~~~~ 532 (776)
T KOG0390|consen 458 EEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTL-KG----YALELITK 532 (776)
T ss_pred hhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhh-hc----chhhHHHH
Confidence 134588899999999999999999999999999999999999999999999876411111 11 15667788
Q ss_pred HHHHhCCcccccCCCCC-----cccchHHH--------HHHHhhhhHHHHHHHHHHHHHHc-CceEEEEecchhhHHHHH
Q 000500 576 LRKLCCHPYMLEGVEPD-----IEDTNESF--------KQLLESSGKLQLLDKMMVKLKEQ-GHRVLIYSQFQHMLDLLE 641 (1460)
Q Consensus 576 LRk~c~hP~L~~~~e~~-----~~~~~~~~--------~~lv~~SgKl~~L~klL~~l~~~-g~KVLIFSq~~~~LdiLe 641 (1460)
|+++|+||.|+...+.. ........ ..-...|+|+..|..|+....+. -.++++.|+++.++|+++
T Consensus 533 L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e 612 (776)
T KOG0390|consen 533 LKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFE 612 (776)
T ss_pred HHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHH
Confidence 99999999998521111 10101000 01123489999999999665543 356667778889999999
Q ss_pred HHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhccc
Q 000500 642 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1460)
Q Consensus 642 d~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRi 721 (1460)
..++.+|+.++|+||+++..+|+.+|+.||.+.+..||||+|++|||+||||.+|++||+||++|||+++.|||+||+|.
T Consensus 613 ~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~Rd 692 (776)
T KOG0390|consen 613 QLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRD 692 (776)
T ss_pred HHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEecCCCHHHHHHHHHHHHHHHHHHHhccc
Q 000500 722 GQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRL 760 (1460)
Q Consensus 722 GQ~k~V~VyrLvt~~TiEE~I~e~a~~K~~L~~~Vig~~ 760 (1460)
||+|+|+||||++.||+||+|++++..|..|-..|++..
T Consensus 693 GQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~ 731 (776)
T KOG0390|consen 693 GQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEE 731 (776)
T ss_pred CCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecc
Confidence 999999999999999999999999999999999998654
No 12
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=8.5e-66 Score=614.26 Aligned_cols=470 Identities=33% Similarity=0.507 Sum_probs=383.0
Q ss_pred CCCCHHHHHHHHHHHHhh---------hcCCcEEEEecCCCCcHHHHHHHHHHHHhC---CCCcEEEEEccccHHHHHHH
Q 000500 284 GSLHPYQLEGLNFLRFSW---------SKQTHVILADEMGLGKTIQSIAFLASLFGE---RISPHLVVAPLSTLRNWERE 351 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~---------~~~~~~ILADemGLGKTiqaIa~l~~L~~~---~~~p~LIVvP~sll~qW~~E 351 (1460)
..|+|||..||.||..+. ..|.|||||+-||||||+|+|+|+..++-. +...+|||||++++.||.+|
T Consensus 667 ~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~E 746 (1567)
T KOG1015|consen 667 IKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNE 746 (1567)
T ss_pred hhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHH
Confidence 579999999999996543 357899999999999999999999987643 45599999999999999999
Q ss_pred HHHHCCCCeE----EEEEc----ChhHHHH-HHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--
Q 000500 352 FATWAPQMNV----VMYVG----TSQARNI-IREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD-- 420 (1460)
Q Consensus 352 ~~kw~P~l~v----vvy~G----~~~~r~~-i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d-- 420 (1460)
|++|.+++.. -+|.- ....|.. +.. |+ ..-.|+|+-|++++.-
T Consensus 747 FekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~--W~------------------------~~ggVmIiGYdmyRnLa~ 800 (1567)
T KOG1015|consen 747 FEKWMEGLEDDEKLEVSELATVKRPEERSYMLQR--WQ------------------------EDGGVMIIGYDMYRNLAQ 800 (1567)
T ss_pred HHHhcccccccccceeehhhhccChHHHHHHHHH--HH------------------------hcCCEEEEehHHHHHHhc
Confidence 9999986322 22221 1112211 111 10 1225999999998642
Q ss_pred -------------hcccCCCcceEEEeccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCC
Q 000500 421 -------------SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFG 487 (1460)
Q Consensus 421 -------------~~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~ 487 (1460)
...|..-..++||+||||-|||..+.+++++..+.+++|++|||||||||+.|++.+++|+.|+.++
T Consensus 801 gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLG 880 (1567)
T KOG1015|consen 801 GRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLG 880 (1567)
T ss_pred ccchhhhHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhccccccc
Confidence 1123333578999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhhhh---------------HHHHHHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHH
Q 000500 488 SLEEFQEEFKDINQ---------------EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAIL 552 (1460)
Q Consensus 488 ~~~~F~~~f~~~~~---------------~~~i~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il 552 (1460)
+..+|...|.+... .....-|+++|..++-|+--..+.+.|||+.+++|.|.||+.|..+|..++
T Consensus 881 s~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL 960 (1567)
T KOG1015|consen 881 SIKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYL 960 (1567)
T ss_pred CcHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHH
Confidence 99999999965321 123456889999999999999999999999999999999999999999998
Q ss_pred HHHHHHHH---hcCCchhhHHHHHHHHHHHhCCcccccC------------------CC-CCc-----------------
Q 000500 553 TRNYQILT---RRGGAQISLINVVMELRKLCCHPYMLEG------------------VE-PDI----------------- 593 (1460)
Q Consensus 553 ~~~~~~l~---~~~~~~~~l~nil~~LRk~c~hP~L~~~------------------~e-~~~----------------- 593 (1460)
+.....-+ ++.+....|+.-...|+++.+|||.+.- .. ...
T Consensus 961 ~h~~~~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~k 1040 (1567)
T KOG1015|consen 961 DHLTGVGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKK 1040 (1567)
T ss_pred hhccccCCccccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhccc
Confidence 83222111 1223456788888899999999986410 00 000
Q ss_pred --------------------------------------------c-------------------cchHHHHHH-------
Q 000500 594 --------------------------------------------E-------------------DTNESFKQL------- 603 (1460)
Q Consensus 594 --------------------------------------------~-------------------~~~~~~~~l------- 603 (1460)
. .+.+++..+
T Consensus 1041 s~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~ 1120 (1567)
T KOG1015|consen 1041 SGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAE 1120 (1567)
T ss_pred ccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhh
Confidence 0 000111122
Q ss_pred -HhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHh----------------------cCCeEEEEecCCCH
Q 000500 604 -LESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----------------------KKWQYERIDGKVGG 660 (1460)
Q Consensus 604 -v~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~----------------------~g~~~~ridGs~~~ 660 (1460)
+..||||.+|..+|+...+-|.|+|||||....||+|++||.. +|..|.||||++..
T Consensus 1121 v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s 1200 (1567)
T KOG1015|consen 1121 VLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTS 1200 (1567)
T ss_pred hhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccH
Confidence 3359999999999999999999999999999999999999953 36689999999999
Q ss_pred HHHHHHHHHHhccCCCC-eeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCCHH
Q 000500 661 AERQIRIDRFNAKNSSR-FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1460)
Q Consensus 661 ~eRq~~Id~Fn~~~s~~-~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiE 739 (1460)
.+|++..++||++..-+ .+||||||||++||||-+|++|||||-.|||.-+.|+|-|++|+||+|+|+||||++.||+|
T Consensus 1201 ~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmE 1280 (1567)
T KOG1015|consen 1201 QSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTME 1280 (1567)
T ss_pred HHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHH
Confidence 99999999999987644 46999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccc-ccCCCHHHHHHHHHhchh
Q 000500 740 ERMMQMTKKKMVLEHLVVGRLK-AQNINQEELDDIIRYGSK 779 (1460)
Q Consensus 740 E~I~e~a~~K~~L~~~Vig~~~-~~~~~~~el~~ll~~ga~ 779 (1460)
++||.|+-.|..+...|+++.. ...++.+||..|+.|...
T Consensus 1281 eKIYkRQVTKqsls~RVVDeqQv~Rhy~~neLteLy~fep~ 1321 (1567)
T KOG1015|consen 1281 EKIYKRQVTKQSLSFRVVDEQQVERHYTMNELTELYTFEPD 1321 (1567)
T ss_pred HHHHHHHHhHhhhhhhhhhHHHHHHHhhHhhhHHHhhcCCc
Confidence 9999999999999999997653 346788999998877543
No 13
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-65 Score=582.31 Aligned_cols=469 Identities=30% Similarity=0.493 Sum_probs=380.5
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHhh-hcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHH
Q 000500 274 YEHSPEFLSGGSLHPYQLEGLNFLRFSW-SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (1460)
Q Consensus 274 ~~~~P~~~~g~~LrpyQlegvnwL~~~~-~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~ 352 (1460)
-.+||..+. ..|.|||++|+.|+.... +.-.|||||||||+|||||+|+++.. .-...|+|||||.-.+.||.+||
T Consensus 174 ~aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla--e~~ra~tLVvaP~VAlmQW~nEI 250 (791)
T KOG1002|consen 174 RAEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA--EVDRAPTLVVAPTVALMQWKNEI 250 (791)
T ss_pred cccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh--ccccCCeeEEccHHHHHHHHHHH
Confidence 346777665 679999999999986544 36789999999999999999999876 33345999999999999999999
Q ss_pred HHHC-CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh-----------
Q 000500 353 ATWA-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----------- 420 (1460)
Q Consensus 353 ~kw~-P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d----------- 420 (1460)
.+++ ..+++.+|||.+..... .....||||+|||..+...
T Consensus 251 ~~~T~gslkv~~YhG~~R~~ni----------------------------kel~~YDvVLTty~vvEs~yRk~~~GfrrK 302 (791)
T KOG1002|consen 251 ERHTSGSLKVYIYHGAKRDKNI----------------------------KELMNYDVVLTTYAVVESVYRKQDYGFRRK 302 (791)
T ss_pred HHhccCceEEEEEecccccCCH----------------------------HHhhcCcEEEEecHHHHHHHHhcccccccc
Confidence 9998 45899999998754331 1236899999999988432
Q ss_pred ------hcccCCCcceEEEeccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChH----
Q 000500 421 ------SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLE---- 490 (1460)
Q Consensus 421 ------~~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~---- 490 (1460)
.+.|.+++|..||+||||.||+..|...+++..+.+.+||.|||||+||.+.|||+|++||..+.|..+-
T Consensus 303 ngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~c 382 (791)
T KOG1002|consen 303 NGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKC 382 (791)
T ss_pred CCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhc
Confidence 4567889999999999999999999999999999999999999999999999999999999988864220
Q ss_pred -----H--H-------------------HHHHh--h-------hhhHHHHHHHHHhhchhhhhhhhhhhhh--cCCCcee
Q 000500 491 -----E--F-------------------QEEFK--D-------INQEEQISRLHRMLAPHLLRRVKKDVMK--ELPPKKE 533 (1460)
Q Consensus 491 -----~--F-------------------~~~f~--~-------~~~~~~i~~L~~~L~p~~LRR~K~dv~~--~LP~k~e 533 (1460)
+ | ...|- . -.........|.+|+.+|+||+|-.-.. .|||...
T Consensus 383 dc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv 462 (791)
T KOG1002|consen 383 DCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIV 462 (791)
T ss_pred cccccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccce
Confidence 0 0 00000 0 0122455678999999999999864333 5899988
Q ss_pred EEEeecCCHHHHHHHHHHHHHHHHHHHhc------CCchhhHHHHHHHHHHHhCCcccccCCC-C---------------
Q 000500 534 LILRVELSSKQKEYYKAILTRNYQILTRR------GGAQISLINVVMELRKLCCHPYMLEGVE-P--------------- 591 (1460)
Q Consensus 534 ~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~------~~~~~~l~nil~~LRk~c~hP~L~~~~e-~--------------- 591 (1460)
.+-+--++..++.+|+.+.......++.. ..+..+++.++.+|||+..||+|+-... .
T Consensus 463 ~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc 542 (791)
T KOG1002|consen 463 TVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLC 542 (791)
T ss_pred eeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeeccc
Confidence 88888899999999999987655444321 2345678889999999999999863210 0
Q ss_pred ------Ccccc---------------------------------------------hHHHH----------HHHhhhhHH
Q 000500 592 ------DIEDT---------------------------------------------NESFK----------QLLESSGKL 610 (1460)
Q Consensus 592 ------~~~~~---------------------------------------------~~~~~----------~lv~~SgKl 610 (1460)
.+... ...++ .-+++|.|+
T Consensus 543 ~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKI 622 (791)
T KOG1002|consen 543 HDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKI 622 (791)
T ss_pred CChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHH
Confidence 00000 00000 013468899
Q ss_pred HHHHHHHHHHHHcC--ceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccc
Q 000500 611 QLLDKMMVKLKEQG--HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGG 688 (1460)
Q Consensus 611 ~~L~klL~~l~~~g--~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg 688 (1460)
.+|.+-|..+.++. -|.||||||+.|||+|.-.|...|+..+.+.|+|++..|..+|+.|.++.. ..|||+|.+|||
T Consensus 623 EAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~-c~vfLvSLkAGG 701 (791)
T KOG1002|consen 623 EALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDID-CRVFLVSLKAGG 701 (791)
T ss_pred HHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCC-eEEEEEEeccCc
Confidence 99999999888765 488999999999999999999999999999999999999999999987554 456999999999
Q ss_pred cccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCCHHHHHHHHHHHHHHHHHHHhccccc--cCCC
Q 000500 689 LGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKA--QNIN 766 (1460)
Q Consensus 689 ~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~a~~K~~L~~~Vig~~~~--~~~~ 766 (1460)
+.+||+.|++|+++||||||+...||++|+|||||.++|.|.||+.++|||++|++.+++|..+.++-+|.... ..++
T Consensus 702 VALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~Ai~kLt 781 (791)
T KOG1002|consen 702 VALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEEAISKLT 781 (791)
T ss_pred eEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999976522 3566
Q ss_pred HHHHHHHH
Q 000500 767 QEELDDII 774 (1460)
Q Consensus 767 ~~el~~ll 774 (1460)
.++|.-|+
T Consensus 782 ~eDmqfLF 789 (791)
T KOG1002|consen 782 EEDMQFLF 789 (791)
T ss_pred HHHHHHHh
Confidence 66666553
No 14
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3.9e-64 Score=592.27 Aligned_cols=473 Identities=28% Similarity=0.507 Sum_probs=390.1
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHhh-hcCCcEEEEecCCCCcHHHHHHHHHHHHhC-----C----CCcEEEEEcc
Q 000500 273 QYEHSPEFLSGGSLHPYQLEGLNFLRFSW-SKQTHVILADEMGLGKTIQSIAFLASLFGE-----R----ISPHLVVAPL 342 (1460)
Q Consensus 273 ~~~~~P~~~~g~~LrpyQlegvnwL~~~~-~~~~~~ILADemGLGKTiqaIa~l~~L~~~-----~----~~p~LIVvP~ 342 (1460)
.+.+.|..+. ..|.|||..|+.||...- ..+.||||||+||||||++.|+++.+-... + ..++|||||.
T Consensus 314 ~lte~P~g~~-v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa 392 (901)
T KOG4439|consen 314 DLTETPDGLK-VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA 392 (901)
T ss_pred cccCCCCcce-eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH
Confidence 3455666554 689999999999995433 346789999999999999999999876531 1 1279999999
Q ss_pred ccHHHHHHHHHHHC--CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh-
Q 000500 343 STLRNWEREFATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL- 419 (1460)
Q Consensus 343 sll~qW~~E~~kw~--P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~- 419 (1460)
|++.||..|+++-. -.+.|.+|||+.. |.+ .- ....+||||||||..+..
T Consensus 393 Sli~qW~~Ev~~rl~~n~LsV~~~HG~n~-r~i-~~-------------------------~~L~~YDvViTTY~lva~~ 445 (901)
T KOG4439|consen 393 SLIHQWEAEVARRLEQNALSVYLYHGPNK-REI-SA-------------------------KELRKYDVVITTYNLVANK 445 (901)
T ss_pred HHHHHHHHHHHHHHhhcceEEEEecCCcc-ccC-CH-------------------------HHHhhcceEEEeeeccccC
Confidence 99999999998765 3488999999875 221 10 123589999999999866
Q ss_pred ---------hhcccCCCcceEEEeccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChH
Q 000500 420 ---------DSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLE 490 (1460)
Q Consensus 420 ---------d~~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~ 490 (1460)
....|..+.|.+||+||||.+||.+++.+.++..+.+..||+|||||+||++-|+|+|+.||....|++..
T Consensus 446 ~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~ 525 (901)
T KOG4439|consen 446 PDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLK 525 (901)
T ss_pred CchhhhcccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHH
Confidence 25568889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhchhhhhhhhhhhhh-----cCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHh----
Q 000500 491 EFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMK-----ELPPKKELILRVELSSKQKEYYKAILTRNYQILTR---- 561 (1460)
Q Consensus 491 ~F~~~f~~~~~~~~i~~L~~~L~p~~LRR~K~dv~~-----~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~---- 561 (1460)
.|.++..... .....++.-+.++.||||+|...-. .||++...++.++|+..+...|.-+++....++.+
T Consensus 526 ~Wke~i~~~s-~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~ 604 (901)
T KOG4439|consen 526 QWKENIDNMS-KGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQ 604 (901)
T ss_pred HHHHhccCcc-ccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888775332 2345567777889999999998765 79999999999999999999999888766554432
Q ss_pred ------cCC--------------------------------chhhHHHHHHHHHHHhCCcccccCCCCCcc---------
Q 000500 562 ------RGG--------------------------------AQISLINVVMELRKLCCHPYMLEGVEPDIE--------- 594 (1460)
Q Consensus 562 ------~~~--------------------------------~~~~l~nil~~LRk~c~hP~L~~~~e~~~~--------- 594 (1460)
.++ ....++.++++||++||||-+.........
T Consensus 605 ~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~s 684 (901)
T KOG4439|consen 605 REDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDS 684 (901)
T ss_pred hhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchh
Confidence 000 001257789999999999966543221000
Q ss_pred -------------------------------cchHHHHHHHhhhhHHHHHHHHHHHH-HHcCceEEEEecchhhHHHHHH
Q 000500 595 -------------------------------DTNESFKQLLESSGKLQLLDKMMVKL-KEQGHRVLIYSQFQHMLDLLED 642 (1460)
Q Consensus 595 -------------------------------~~~~~~~~lv~~SgKl~~L~klL~~l-~~~g~KVLIFSq~~~~LdiLed 642 (1460)
.....+......|.|+..+...+..+ .....|++|.||++.+|+++..
T Consensus 685 de~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~ 764 (901)
T KOG4439|consen 685 DEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRK 764 (901)
T ss_pred hhhhhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHH
Confidence 00011112234688998888888877 6668999999999999999999
Q ss_pred HHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccC
Q 000500 643 YLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG 722 (1460)
Q Consensus 643 ~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiG 722 (1460)
.|...|+.|..|+|.+...+|+.+++.||....+..|+|||..|||+||||+.|+|+|++|..|||+...||.+|++|+|
T Consensus 765 hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~G 844 (901)
T KOG4439|consen 765 HIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMG 844 (901)
T ss_pred HHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcccc---ccCCCHHHHHHHH
Q 000500 723 QTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK---AQNINQEELDDII 774 (1460)
Q Consensus 723 Q~k~V~VyrLvt~~TiEE~I~e~a~~K~~L~~~Vig~~~---~~~~~~~el~~ll 774 (1460)
|+|.|.||||+++||||++|...+.+|+.|+..|+.+.. ...++..+|..||
T Consensus 845 QkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~adlk~LF 899 (901)
T KOG4439|consen 845 QKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLADLKKLF 899 (901)
T ss_pred ccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccccccccccHHHHHHHh
Confidence 999999999999999999999999999999999995332 3455666666553
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-63 Score=659.80 Aligned_cols=474 Identities=43% Similarity=0.720 Sum_probs=411.1
Q ss_pred CCCCCCCHHHHHHHHHHH-HhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCC---CCcEEEEEccccHHHHHHHHHHHC
Q 000500 281 LSGGSLHPYQLEGLNFLR-FSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLRNWEREFATWA 356 (1460)
Q Consensus 281 ~~g~~LrpyQlegvnwL~-~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~---~~p~LIVvP~sll~qW~~E~~kw~ 356 (1460)
....+|+|||++|++||. ..+..+.+|||||+||||||+|+|+++.++.... .+|+|||||.+++.||.+|+.+|.
T Consensus 334 ~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~~ 413 (866)
T COG0553 334 DLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFA 413 (866)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhhC
Confidence 334789999999999999 8889999999999999999999999999865542 359999999999999999999999
Q ss_pred CCCe-EEEEEcChhH----HHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh---hhcccCCCc
Q 000500 357 PQMN-VVMYVGTSQA----RNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL---DSASLKPIK 428 (1460)
Q Consensus 357 P~l~-vvvy~G~~~~----r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~---d~~~L~~i~ 428 (1460)
|.++ +.+++|.... +..+....... . ...|++++|||+.+.. +...+..+.
T Consensus 414 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------------------~--~~~~~v~itty~~l~~~~~~~~~l~~~~ 472 (866)
T COG0553 414 PDLRLVLVYHGEKSELDKKREALRDLLKLH-------------------L--VIIFDVVITTYELLRRFLVDHGGLKKIE 472 (866)
T ss_pred ccccceeeeeCCcccccHHHHHHHHHhhhc-------------------c--cceeeEEechHHHHHHhhhhHHHHhhce
Confidence 9999 9999998863 44444321100 0 2358999999999999 999999999
Q ss_pred ceEEEeccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHH-hhcCCCCC-ChHHHHHHHhhhh------
Q 000500 429 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH-FLDAGKFG-SLEEFQEEFKDIN------ 500 (1460)
Q Consensus 429 w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~-fL~p~~f~-~~~~F~~~f~~~~------ 500 (1460)
|+++|+||||++||..+..+++++.+++.++++|||||++|++.|||++++ |+.|..++ +...|..+|....
T Consensus 473 ~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~ 552 (866)
T COG0553 473 WDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDI 552 (866)
T ss_pred eeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccc
Confidence 999999999999999999999999999999999999999999999999999 99999999 5588999886432
Q ss_pred -----hHHHHHHHHHhhchhhhhhhhhh--hhhcCCCceeEEEeecCCHHHHHHHHHHHH---HHHHHHHhc--CC----
Q 000500 501 -----QEEQISRLHRMLAPHLLRRVKKD--VMKELPPKKELILRVELSSKQKEYYKAILT---RNYQILTRR--GG---- 564 (1460)
Q Consensus 501 -----~~~~i~~L~~~L~p~~LRR~K~d--v~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~---~~~~~l~~~--~~---- 564 (1460)
....+..|+.+++||++||+|.+ +...||++.+.++.|+|+..|+.+|...+. ++...+... ..
T Consensus 553 ~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (866)
T COG0553 553 GPLEARELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDEN 632 (866)
T ss_pred cchhhHHHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 12344558899999999999999 899999999999999999999999999998 666555432 11
Q ss_pred ----chhhHHHHHHHHHHHhCCcccccCC-CCCcc----------cchHHHHHHHhhh-hHHHHHHHHH-HHHHHcCc--
Q 000500 565 ----AQISLINVVMELRKLCCHPYMLEGV-EPDIE----------DTNESFKQLLESS-GKLQLLDKMM-VKLKEQGH-- 625 (1460)
Q Consensus 565 ----~~~~l~nil~~LRk~c~hP~L~~~~-e~~~~----------~~~~~~~~lv~~S-gKl~~L~klL-~~l~~~g~-- 625 (1460)
....+++.++.||++|+||.++... ..... ........++..+ +|+..+.++| ..++..|+
T Consensus 633 ~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~ 712 (866)
T COG0553 633 RIGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYH 712 (866)
T ss_pred cccchhhHHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccc
Confidence 1667899999999999999999765 22111 1111123466778 9999999999 89999999
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCC
Q 000500 626 RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD 705 (1460)
Q Consensus 626 KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~Dsd 705 (1460)
|||||+||+.++++|+.+|...++.|++++|+++...|+.+|++|+++ ...+|||+|++|||.||||+.|++||+||++
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~ 791 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPW 791 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccc
Confidence 999999999999999999999999999999999999999999999987 5667899999999999999999999999999
Q ss_pred CChhhHHHHHHhhcccCCCCceEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcc-c--cccCCCHHHHHHHHHh
Q 000500 706 WNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGR-L--KAQNINQEELDDIIRY 776 (1460)
Q Consensus 706 WNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~a~~K~~L~~~Vig~-~--~~~~~~~~el~~ll~~ 776 (1460)
|||+.+.||++|+|||||++.|.||+|++++|+||+|++++..|+.+...+++. . ....++.+++..++..
T Consensus 792 wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 865 (866)
T COG0553 792 WNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEGEKELSKLSIEDLLDLFSL 865 (866)
T ss_pred cChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhhhcccchhhccHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999974 2 2234666777666543
No 16
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=4.3e-55 Score=513.94 Aligned_cols=483 Identities=32% Similarity=0.505 Sum_probs=371.8
Q ss_pred CCCCHHHHHHHHHHH---------HhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCC-CCcEEEEEccccHHHHHHHHH
Q 000500 284 GSLHPYQLEGLNFLR---------FSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFA 353 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~---------~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~-~~p~LIVvP~sll~qW~~E~~ 353 (1460)
..|+|||+-|+.||+ +.-+.|-|||||+.||||||+|+|+|+..++... .+.+|+|+|-.||.||..||.
T Consensus 253 ~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPiNTlQNWlsEfn 332 (1387)
T KOG1016|consen 253 HVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPINTLQNWLSEFN 332 (1387)
T ss_pred hhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCccceEEEEEehHHHHHHHHHhh
Confidence 469999999999983 2335678999999999999999999999887654 458999999999999999999
Q ss_pred HHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh-------------
Q 000500 354 TWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD------------- 420 (1460)
Q Consensus 354 kw~P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d------------- 420 (1460)
.|.|.+. .+.. ...|.++++.-+...+.... ...++.. -...-.|+++.|++++.-
T Consensus 333 mWiP~y~-----sD~~--vrpR~F~vf~LnD~~KT~~~-Rakvi~~---Wv~~GGVlLvGYemfRLL~lk~~~~~grpkk 401 (1387)
T KOG1016|consen 333 MWIPKYF-----SDTG--VRPRSFEVFLLNDGVKTFDQ-RAKVIEQ---WVQTGGVLLVGYEMFRLLILKTLPKKGRPKK 401 (1387)
T ss_pred hhcCCCc-----ccCC--CccceeEEEEecCchhhHHH-HHHHHHH---HhccCCEEEehHHHHHHHHHhcccccCCccc
Confidence 9998621 0000 01112222211111000000 0000000 001224788888887432
Q ss_pred -------------------------hcccCCCcceEEEeccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHH
Q 000500 421 -------------------------SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELF 475 (1460)
Q Consensus 421 -------------------------~~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~ 475 (1460)
...|-.-..++||+||+|||||..+.++.+|+.+++++|+.|||-|+|||+.|+|
T Consensus 402 t~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYw 481 (1387)
T KOG1016|consen 402 TLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYW 481 (1387)
T ss_pred cccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHh
Confidence 1112222358999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCChHHHHHHHhhhhh---------------HHHHHHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecC
Q 000500 476 MLMHFLDAGKFGSLEEFQEEFKDINQ---------------EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVEL 540 (1460)
Q Consensus 476 sLL~fL~p~~f~~~~~F~~~f~~~~~---------------~~~i~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~L 540 (1460)
.++.|+.|+.+++..+|...|..... .-....||.+|..|+-||+...+...||.+.|+++-|.|
T Consensus 482 CMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~ 561 (1387)
T KOG1016|consen 482 CMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRK 561 (1387)
T ss_pred hhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeH
Confidence 99999999999999999999964211 123456999999999999999998899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC--------------------------------
Q 000500 541 SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG-------------------------------- 588 (1460)
Q Consensus 541 s~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~-------------------------------- 588 (1460)
|..|+++|..++......+...+....+.+....-..|+-|||-++..
T Consensus 562 s~iQR~LY~~Fm~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~ 641 (1387)
T KOG1016|consen 562 SQIQRQLYRNFMLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNS 641 (1387)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCCC
Confidence 999999999998655544433332222223333333444578754210
Q ss_pred --CCCC--------------------------------cccchHHH--------HHHHhhhhHHHHHHHHHHHHHHcCce
Q 000500 589 --VEPD--------------------------------IEDTNESF--------KQLLESSGKLQLLDKMMVKLKEQGHR 626 (1460)
Q Consensus 589 --~e~~--------------------------------~~~~~~~~--------~~lv~~SgKl~~L~klL~~l~~~g~K 626 (1460)
..+. +....+.. ..++.++.|+.++.+++..-..-|.|
T Consensus 642 ~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~~g~k 721 (1387)
T KOG1016|consen 642 IPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILDESTQIGEK 721 (1387)
T ss_pred CCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeeccccccCce
Confidence 0000 00000000 12344677888888888887788999
Q ss_pred EEEEecchhhHHHHHHHHHhcC------------------CeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccc
Q 000500 627 VLIYSQFQHMLDLLEDYLTFKK------------------WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGG 688 (1460)
Q Consensus 627 VLIFSq~~~~LdiLed~L~~~g------------------~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg 688 (1460)
+|||||....||+|+.+|..+. ..|.|+||.++..+|+++|++||.+.+....||||||||.
T Consensus 722 il~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~ 801 (1387)
T KOG1016|consen 722 ILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGS 801 (1387)
T ss_pred EEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcccc
Confidence 9999999999999999997653 3689999999999999999999998888888999999999
Q ss_pred cccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcccc-ccCCCH
Q 000500 689 LGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK-AQNINQ 767 (1460)
Q Consensus 689 ~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~a~~K~~L~~~Vig~~~-~~~~~~ 767 (1460)
.||||-+|+.+||||.-|||..+.||..|++|+||+|+++|||||..+|+|.+|+.|+-.|.++.+.|++... ..+++.
T Consensus 802 lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np~an~s~ 881 (1387)
T KOG1016|consen 802 LGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANPDANISQ 881 (1387)
T ss_pred ccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCccccccH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998764 457999
Q ss_pred HHHHHHHHhc
Q 000500 768 EELDDIIRYG 777 (1460)
Q Consensus 768 ~el~~ll~~g 777 (1460)
.|++.|+.+.
T Consensus 882 Ke~enLl~~~ 891 (1387)
T KOG1016|consen 882 KELENLLMYD 891 (1387)
T ss_pred HHHHHHhhhh
Confidence 9999998764
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=4.2e-54 Score=491.16 Aligned_cols=409 Identities=28% Similarity=0.441 Sum_probs=327.0
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHHCCCCeEE-E
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVV-M 363 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~kw~P~l~vv-v 363 (1460)
.|.|||++||+|. +..|++++||||||||||+|||+++.+++.++ |.|||||.++...|..++.+|.|...-+ +
T Consensus 198 ~LlPFQreGv~fa---L~RgGR~llADeMGLGKTiQAlaIA~yyraEw--plliVcPAsvrftWa~al~r~lps~~pi~v 272 (689)
T KOG1000|consen 198 RLLPFQREGVIFA---LERGGRILLADEMGLGKTIQALAIARYYRAEW--PLLIVCPASVRFTWAKALNRFLPSIHPIFV 272 (689)
T ss_pred hhCchhhhhHHHH---HhcCCeEEEecccccchHHHHHHHHHHHhhcC--cEEEEecHHHhHHHHHHHHHhcccccceEE
Confidence 5999999999875 37899999999999999999999999998886 9999999999999999999999876552 2
Q ss_pred EEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEeccccccCCc
Q 000500 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNK 443 (1460)
Q Consensus 364 y~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrlKN~ 443 (1460)
..+..+. .++ -....-|.|+||+++......|..-+|.+||+||+|.||+.
T Consensus 273 v~~~~D~----------~~~-------------------~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~s 323 (689)
T KOG1000|consen 273 VDKSSDP----------LPD-------------------VCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDS 323 (689)
T ss_pred EecccCC----------ccc-------------------cccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhcc
Confidence 2222110 000 01234589999999999999999999999999999999999
Q ss_pred chHHHHHHHhc--cccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh---------hHHHHHHHHHhh
Q 000500 444 DSKLFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN---------QEEQISRLHRML 512 (1460)
Q Consensus 444 ~Sk~~~al~~l--~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~---------~~~~i~~L~~~L 512 (1460)
.++..+++..+ ...|.+||||||.-..+.|||.++..+++..|+++.+|...|.+.. .-.+..+|+-+|
T Consensus 324 ktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL 403 (689)
T KOG1000|consen 324 KTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALL 403 (689)
T ss_pred chhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHH
Confidence 99999888777 4689999999999999999999999999999999999999997533 335677788776
Q ss_pred c-hhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000500 513 A-PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1460)
Q Consensus 513 ~-p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~ 591 (1460)
. ..|+||+|.+|+++||||...++ +.....+-..-+.+.....+ ... .+. |+-.+.| +.
T Consensus 404 ~k~lMIRRlK~dvL~qLPpKrr~Vv-~~~~gr~da~~~~lv~~a~~------~t~---~~~-~e~~~~~----l~----- 463 (689)
T KOG1000|consen 404 FKRLMIRRLKADVLKQLPPKRREVV-YVSGGRIDARMDDLVKAAAD------YTK---VNS-MERKHES----LL----- 463 (689)
T ss_pred HHHHHHHHHHHHHHhhCCccceEEE-EEcCCccchHHHHHHHHhhh------cch---hhh-hhhhhHH----HH-----
Confidence 5 46999999999999999954444 44455444444444333222 000 000 0001110 00
Q ss_pred CcccchHHHHHHHhhhhHHHHHHHHHHH----HHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHH
Q 000500 592 DIEDTNESFKQLLESSGKLQLLDKMMVK----LKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (1460)
Q Consensus 592 ~~~~~~~~~~~lv~~SgKl~~L~klL~~----l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~I 667 (1460)
+.--...-.|+..+.+.|-. ..+.+.|+|||+.+..+||-|+.++..+++.++||||+|++.+|+.++
T Consensus 464 --------l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~ 535 (689)
T KOG1000|consen 464 --------LFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLC 535 (689)
T ss_pred --------HHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHH
Confidence 00001123455555555544 445688999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCCHHHHHHHHHH
Q 000500 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747 (1460)
Q Consensus 668 d~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~a~ 747 (1460)
+.|+... ...|-+||..|+|+||+|++|+.|+|.+..|||...+||.+|+||+||+..|.||+||+++|+|+.+|....
T Consensus 536 qsFQ~se-ev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~ 614 (689)
T KOG1000|consen 536 QSFQTSE-EVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQ 614 (689)
T ss_pred HHhcccc-ceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHH
Confidence 9998754 445589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 000500 748 KKMVLEHLV 756 (1460)
Q Consensus 748 ~K~~L~~~V 756 (1460)
+|+.....+
T Consensus 615 ~KL~vl~s~ 623 (689)
T KOG1000|consen 615 QKLDVLGSV 623 (689)
T ss_pred HHHHHHhhc
Confidence 999754443
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=5.2e-52 Score=534.12 Aligned_cols=417 Identities=19% Similarity=0.268 Sum_probs=321.6
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCC-CCcEEEEEccccHHHHHHHHHHHCCCCeEE
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNVV 362 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~-~~p~LIVvP~sll~qW~~E~~kw~P~l~vv 362 (1460)
..|.|||+..+.++... ...++|||||||||||++|++++..+...+ .+|+|||||.+++.||..|+.+|+ ++...
T Consensus 151 ~~l~pHQl~~~~~vl~~--~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~sL~~QW~~El~~kF-~l~~~ 227 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRR--HAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPETLQHQWLVEMLRRF-NLRFS 227 (956)
T ss_pred CCCCHHHHHHHHHHhhc--cCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHHHHHHHHHHHHHHh-CCCeE
Confidence 56999999998776433 467899999999999999999999887665 459999999999999999999887 56677
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh---cccCCCcceEEEeccccc
Q 000500 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCMIVDEGHR 439 (1460)
Q Consensus 363 vy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~---~~L~~i~w~~VIvDEAHr 439 (1460)
+|.+...... . .. .......++++|+||+++..+. ..+....|++|||||||+
T Consensus 228 i~~~~~~~~~-------~-~~----------------~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~ 283 (956)
T PRK04914 228 LFDEERYAEA-------Q-HD----------------ADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHH 283 (956)
T ss_pred EEcCcchhhh-------c-cc----------------ccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhh
Confidence 7765432210 0 00 0011235789999999998753 446677999999999999
Q ss_pred cCC---cchHHHHHHHhc--cccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhh---hh-----------
Q 000500 440 LKN---KDSKLFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD---IN----------- 500 (1460)
Q Consensus 440 lKN---~~Sk~~~al~~l--~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~---~~----------- 500 (1460)
+++ ..|+.++.+..+ .+.++|||||||+||+..|+|++|+||+|+.|+++..|.++... +.
T Consensus 284 lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~ 363 (956)
T PRK04914 284 LVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEK 363 (956)
T ss_pred hccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCc
Confidence 995 356778888877 46799999999999999999999999999999999999865432 10
Q ss_pred -hHHHHHHHHHh------------------------------------hchhhhhhhhhhhhhcCCCceeEEEeecCCHH
Q 000500 501 -QEEQISRLHRM------------------------------------LAPHLLRRVKKDVMKELPPKKELILRVELSSK 543 (1460)
Q Consensus 501 -~~~~i~~L~~~------------------------------------L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~ 543 (1460)
.......|..+ ..++|+|+++++|. .+|.+..+.+.+++.+.
T Consensus 364 ~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~ 442 (956)
T PRK04914 364 LSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQ 442 (956)
T ss_pred CCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHH
Confidence 01111122111 12568899999976 68999999999999764
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcc-cccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHH
Q 000500 544 QKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY-MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKE 622 (1460)
Q Consensus 544 Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~-L~~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~ 622 (1460)
-...+.. .. ...++++ .+|- ++.... ........++|+..|.++|+.+
T Consensus 443 y~~~~~~----~~----------------~~~~~~~-l~pe~~~~~~~--------~~~~~~~~d~Ki~~L~~~L~~~-- 491 (956)
T PRK04914 443 YQTAIKV----SL----------------EARARDM-LYPEQIYQEFE--------DNATWWNFDPRVEWLIDFLKSH-- 491 (956)
T ss_pred HHHHHHH----hH----------------HHHHHhh-cCHHHHHHHHh--------hhhhccccCHHHHHHHHHHHhc--
Confidence 2222211 00 0111221 1221 000000 0011233467999999988875
Q ss_pred cCceEEEEecchhhHHHHHHHH-HhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEE
Q 000500 623 QGHRVLIYSQFQHMLDLLEDYL-TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (1460)
Q Consensus 623 ~g~KVLIFSq~~~~LdiLed~L-~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi 701 (1460)
.++||||||++..+++.|.+.| ...|+++..|+|+++..+|+++++.|+.++.+ ..|||+|.+||+|+||+.|++||+
T Consensus 492 ~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~-~~VLIsTdvgseGlNlq~a~~VIn 570 (956)
T PRK04914 492 RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDG-AQVLLCSEIGSEGRNFQFASHLVL 570 (956)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCC-ccEEEechhhccCCCcccccEEEE
Confidence 3789999999999999999999 56799999999999999999999999875433 347899999999999999999999
Q ss_pred ecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCCHHHHHHHHHHHHHHHHHHHhccc
Q 000500 702 YDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRL 760 (1460)
Q Consensus 702 ~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~a~~K~~L~~~Vig~~ 760 (1460)
||.||||..++||+||+||+||++.|.||.+++++|+++.|++...+|+.+...+++..
T Consensus 571 fDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~ 629 (956)
T PRK04914 571 FDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTG 629 (956)
T ss_pred ecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCH
Confidence 99999999999999999999999999999999999999999999999998877776543
No 19
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.1e-47 Score=478.54 Aligned_cols=437 Identities=30% Similarity=0.495 Sum_probs=357.4
Q ss_pred HHHHHHHHHHHH-hhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCC--------CcEEEEEccccHHHHHHHHHHHCC-
Q 000500 288 PYQLEGLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLFGERI--------SPHLVVAPLSTLRNWEREFATWAP- 357 (1460)
Q Consensus 288 pyQlegvnwL~~-~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~--------~p~LIVvP~sll~qW~~E~~kw~P- 357 (1460)
.+|..+..|+.. .+..-.|||+||+||+|||+++|+++........ +-+|||||.+++.||..|+.+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 566666555532 3345678999999999999999999887644322 378999999999999999966663
Q ss_pred -CCeEEEEEc-ChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEec
Q 000500 358 -QMNVVMYVG-TSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1460)
Q Consensus 358 -~l~vvvy~G-~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvD 435 (1460)
.+.+.+|+| .+.. ....+++||||||.++.. ..+..+.|-+||+|
T Consensus 215 ~~l~v~v~~gr~kd~-------------------------------~el~~~dVVltTy~il~~--~~l~~i~w~Riild 261 (674)
T KOG1001|consen 215 DKLSIYVYHGRTKDK-------------------------------SELNSYDVVLTTYDILKN--SPLVKIKWLRIVLD 261 (674)
T ss_pred cceEEEEeccccccc-------------------------------chhcCCceEEeeHHHhhc--ccccceeEEEEEec
Confidence 477888888 2111 123578899999999976 66777999999999
Q ss_pred cccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh---h-HHHHHHHHHh
Q 000500 436 EGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN---Q-EEQISRLHRM 511 (1460)
Q Consensus 436 EAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~---~-~~~i~~L~~~ 511 (1460)
|||.++|.+++.++++..+.+.+||.|||||+||++.|||+++.|+.-..+.....|...+.... . ...+..++.+
T Consensus 262 ea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~ 341 (674)
T KOG1001|consen 262 EAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGI 341 (674)
T ss_pred cccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888887765422 2 4667889999
Q ss_pred hchhhhhhhhhhh-----hhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhc------CCchhhHHHHHHHHHHHh
Q 000500 512 LAPHLLRRVKKDV-----MKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRR------GGAQISLINVVMELRKLC 580 (1460)
Q Consensus 512 L~p~~LRR~K~dv-----~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~------~~~~~~l~nil~~LRk~c 580 (1460)
|..+++||+|..- .-.|||+...++.+.++..++.+|+.+........... ......++..+.+||++|
T Consensus 342 L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c 421 (674)
T KOG1001|consen 342 LKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQAC 421 (674)
T ss_pred HHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHc
Confidence 9999999999632 23699999999999999999999999987665544321 223456777888999999
Q ss_pred CCcccccCCCCCcc----c-----------------------------------chH---------------------HH
Q 000500 581 CHPYMLEGVEPDIE----D-----------------------------------TNE---------------------SF 600 (1460)
Q Consensus 581 ~hP~L~~~~e~~~~----~-----------------------------------~~~---------------------~~ 600 (1460)
+||+++-....... . ..+ ..
T Consensus 422 ~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 422 DHSLLVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cchHhhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 99987632100000 0 000 00
Q ss_pred HHHHh-------------hhhHHHHHHHHHHHHHHcCc-eEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Q 000500 601 KQLLE-------------SSGKLQLLDKMMVKLKEQGH-RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1460)
Q Consensus 601 ~~lv~-------------~SgKl~~L~klL~~l~~~g~-KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~ 666 (1460)
..++. .|.|+..+.++|........ ++|||||++.++++++..|...++.+.+++|.++...|.+.
T Consensus 502 ~~l~s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s 581 (674)
T KOG1001|consen 502 KKLLSANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKS 581 (674)
T ss_pred HHHhhcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhh
Confidence 11111 26677778888875444444 99999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCCHHHHHHHHH
Q 000500 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (1460)
Q Consensus 667 Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~a 746 (1460)
+..|+. +....+.|+|.+|||.||||+.|++||++||+|||....||+.||||+||+++|.|+||++++|+||+|+.++
T Consensus 582 ~~~~~~-~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq 660 (674)
T KOG1001|consen 582 FTDFPC-DPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQ 660 (674)
T ss_pred hccccc-CccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHH
Confidence 999994 4555668999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 000500 747 KKKMVLEHLVVG 758 (1460)
Q Consensus 747 ~~K~~L~~~Vig 758 (1460)
++|..+.....|
T Consensus 661 ~~K~~~~~~a~~ 672 (674)
T KOG1001|consen 661 EKKREYNASAFG 672 (674)
T ss_pred HHHHHHHhhhcc
Confidence 999998877654
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=1.4e-40 Score=386.21 Aligned_cols=272 Identities=42% Similarity=0.704 Sum_probs=228.0
Q ss_pred HHHHHHHHHHHhh---------hcCCcEEEEecCCCCcHHHHHHHHHHHHhCCC----CcEEEEEccccHHHHHHHHHHH
Q 000500 289 YQLEGLNFLRFSW---------SKQTHVILADEMGLGKTIQSIAFLASLFGERI----SPHLVVAPLSTLRNWEREFATW 355 (1460)
Q Consensus 289 yQlegvnwL~~~~---------~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~----~p~LIVvP~sll~qW~~E~~kw 355 (1460)
||++||+||+..+ ...+|||||||||+|||+++++++.++..... +++|||||.+++.+|..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 88899999999999999999999998876543 2699999999999999999999
Q ss_pred C-C-CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHH-----hhhcccCCCc
Q 000500 356 A-P-QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMIN-----LDSASLKPIK 428 (1460)
Q Consensus 356 ~-P-~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~-----~d~~~L~~i~ 428 (1460)
+ | .+++++|.|....+.. .......++++|+||+.+. .....+..++
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~--------------------------~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~ 134 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRL--------------------------SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIK 134 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHT--------------------------TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSE
T ss_pred cccccccccccccccccccc--------------------------cccccccceeeecccccccccccccccccccccc
Confidence 9 4 6888888887722211 0112357899999999999 6777888899
Q ss_pred ceEEEeccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhh---hhhHHHH
Q 000500 429 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD---INQEEQI 505 (1460)
Q Consensus 429 w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~---~~~~~~i 505 (1460)
|++|||||+|++||..+..++++..+.+.++|+|||||++|++.|||++++||.|..+.+...|...|.. .......
T Consensus 135 ~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~ 214 (299)
T PF00176_consen 135 WDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYENI 214 (299)
T ss_dssp EEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHHHH
T ss_pred ceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998843 3456788
Q ss_pred HHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcC----CchhhHHHHHHHHHHHhC
Q 000500 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG----GAQISLINVVMELRKLCC 581 (1460)
Q Consensus 506 ~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~----~~~~~l~nil~~LRk~c~ 581 (1460)
..|..+++++++||+++++...+|+..+.++.|+||+.|+..|+.+.......+.... +....++..+++||++|+
T Consensus 215 ~~L~~~l~~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~ 294 (299)
T PF00176_consen 215 ERLRELLSEFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCN 294 (299)
T ss_dssp HHHHHHHCCCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhC
Confidence 9999999999999999999889999999999999999999999998887665544332 344678899999999999
Q ss_pred Ccccc
Q 000500 582 HPYML 586 (1460)
Q Consensus 582 hP~L~ 586 (1460)
||+|+
T Consensus 295 hp~l~ 299 (299)
T PF00176_consen 295 HPYLV 299 (299)
T ss_dssp -THHC
T ss_pred CcccC
Confidence 99974
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.5e-36 Score=379.67 Aligned_cols=342 Identities=15% Similarity=0.258 Sum_probs=255.0
Q ss_pred CCCCCHHHHHHHHHHHHhhhcC--CcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccc-cHHHHHHHHHHHC--C
Q 000500 283 GGSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWA--P 357 (1460)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~--~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~s-ll~qW~~E~~kw~--P 357 (1460)
..+|||||.++++++. .++ ++|||.++||+|||+++++++..+ .+++|||||.+ ++.||.++|.+|+ +
T Consensus 253 ~~~LRpYQ~eAl~~~~---~~gr~r~GIIvLPtGaGKTlvai~aa~~l----~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVTAACTV----KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHH---hcCCCCCcEEEeCCCCChHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 4789999999998773 333 589999999999999999988765 25899999975 4889999999997 3
Q ss_pred CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----------hcccCCC
Q 000500 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----------SASLKPI 427 (1460)
Q Consensus 358 ~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d----------~~~L~~i 427 (1460)
...+..|.|....+. ....+|+|+||+++... ...|...
T Consensus 326 ~~~I~~~tg~~k~~~-------------------------------~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~ 374 (732)
T TIGR00603 326 DSQICRFTSDAKERF-------------------------------HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNR 374 (732)
T ss_pred CceEEEEecCccccc-------------------------------ccCCcEEEEEHHHhhcccccchhhhHHHHHhccc
Confidence 456666766532210 12357999999998643 2345566
Q ss_pred cceEEEeccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHh-hcCCCCCChHHHHHHHhhhhhHHHHH
Q 000500 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHF-LDAGKFGSLEEFQEEFKDINQEEQIS 506 (1460)
Q Consensus 428 ~w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~f-L~p~~f~~~~~F~~~f~~~~~~~~i~ 506 (1460)
.|++||+||||++.+ ....+.+..+.+.+||+|||||++++- .+..+.+ +.|..|.
T Consensus 375 ~~gLII~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD~--~~~~L~~LiGP~vye------------------- 431 (732)
T TIGR00603 375 EWGLILLDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVREDD--KITDLNFLIGPKLYE------------------- 431 (732)
T ss_pred cCCEEEEEccccccH--HHHHHHHHhcCcCcEEEEeecCcccCC--chhhhhhhcCCeeee-------------------
Confidence 899999999999964 334456777889999999999998762 2333333 2343321
Q ss_pred HHHHhhchhhhhhhhhhhh--hcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcc
Q 000500 507 RLHRMLAPHLLRRVKKDVM--KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY 584 (1460)
Q Consensus 507 ~L~~~L~p~~LRR~K~dv~--~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~ 584 (1460)
-...++. ..|.+.....|+|+|++.....|... . .. .+..
T Consensus 432 ------------~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~---~-------~~-----------~k~~----- 473 (732)
T TIGR00603 432 ------------ANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRE---N-------SR-----------KRML----- 473 (732)
T ss_pred ------------cCHHHHHhCCccccceEEEEEecCCHHHHHHHHHh---c-------ch-----------hhhH-----
Confidence 1111221 24677778889999998754444211 0 00 0000
Q ss_pred cccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHH
Q 000500 585 MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ 664 (1460)
Q Consensus 585 L~~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq 664 (1460)
....+..|+..+..++......|+|+||||+++..++.+...| +. ..|+|+++..+|.
T Consensus 474 -----------------l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~ 531 (732)
T TIGR00603 474 -----------------LYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERM 531 (732)
T ss_pred -----------------HhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHH
Confidence 0012456889998888877678999999999999888887777 33 4589999999999
Q ss_pred HHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCC-ChhhHHHHHHhhcccCCCCc-----eEEEEEecCCCH
Q 000500 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNK-----VMIFRLITRGSI 738 (1460)
Q Consensus 665 ~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdW-NP~~d~QAigRahRiGQ~k~-----V~VyrLvt~~Ti 738 (1460)
+++++|+..+ .+.+|++|++|++||||+.|++||++++++ |+..++||+||+.|.+..+. ..+|.||+++|.
T Consensus 532 ~il~~Fr~~~--~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 532 QILQNFQHNP--KVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred HHHHHHHhCC--CccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 9999998532 344788889999999999999999999986 99999999999999987653 789999999999
Q ss_pred HHHHHHHHH
Q 000500 739 EERMMQMTK 747 (1460)
Q Consensus 739 EE~I~e~a~ 747 (1460)
|+....+.+
T Consensus 610 E~~~s~~Rq 618 (732)
T TIGR00603 610 EMYYSTKRQ 618 (732)
T ss_pred HHHHHHHHH
Confidence 988755433
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.4e-32 Score=357.64 Aligned_cols=430 Identities=17% Similarity=0.201 Sum_probs=283.3
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCC--CCe
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--QMN 360 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P--~l~ 360 (1460)
.++|+||.+.+..+. . +++|++++||+|||++++.++..+.....+++|||||. .++.||..++.+++. ..+
T Consensus 14 ~~~r~yQ~~~~~~~l----~-~n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 88 (773)
T PRK13766 14 IEARLYQQLLAATAL----K-KNTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEK 88 (773)
T ss_pred CCccHHHHHHHHHHh----c-CCeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCce
Confidence 578999999887652 2 38999999999999999988887765555699999997 788999999998873 247
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcceEEEecccc
Q 000500 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGH 438 (1460)
Q Consensus 361 vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~--~~L~~i~w~~VIvDEAH 438 (1460)
+++++|......... + ....+|+++|++.+..+. ..+..-.|++|||||||
T Consensus 89 v~~~~g~~~~~~r~~---~------------------------~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 89 IVVFTGEVSPEKRAE---L------------------------WEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred EEEEeCCCCHHHHHH---H------------------------HhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 888888654322111 1 124579999999987653 23334478999999999
Q ss_pred ccCCcchHHHHHHHhc---cccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHH----HHHHh-------hhhhHHH
Q 000500 439 RLKNKDSKLFSSLKQY---STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEF----QEEFK-------DINQEEQ 504 (1460)
Q Consensus 439 rlKN~~Sk~~~al~~l---~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F----~~~f~-------~~~~~~~ 504 (1460)
++.+..+..+.+-... ...++++|||||.++ ...+..+++-|....+..+..| ...+. ...-...
T Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~ 220 (773)
T PRK13766 142 RAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEE 220 (773)
T ss_pred cccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHH
Confidence 9987665443332222 234589999999865 5667677766654332211111 11111 1122355
Q ss_pred HHHHHHhhchhhhhhhhhhhhhc-CCCceeEEEeecCCHHHHHHHHHHHHHHHHH---H---------H-----hcCCch
Q 000500 505 ISRLHRMLAPHLLRRVKKDVMKE-LPPKKELILRVELSSKQKEYYKAILTRNYQI---L---------T-----RRGGAQ 566 (1460)
Q Consensus 505 i~~L~~~L~p~~LRR~K~dv~~~-LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~---l---------~-----~~~~~~ 566 (1460)
+..++..|..++.++.+...... +++....+....+...++.++..+....... + . ......
T Consensus 221 ~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 300 (773)
T PRK13766 221 LKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGV 300 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 66788888888877776543222 2222211222222333333332221100000 0 0 000011
Q ss_pred hhHHHHHHHHHHHhCCcccccCCCCCcccch------HHHHHHHhhhhHHHHHHHHHHHHH--HcCceEEEEecchhhHH
Q 000500 567 ISLINVVMELRKLCCHPYMLEGVEPDIEDTN------ESFKQLLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLD 638 (1460)
Q Consensus 567 ~~l~nil~~LRk~c~hP~L~~~~e~~~~~~~------~~~~~lv~~SgKl~~L~klL~~l~--~~g~KVLIFSq~~~~Ld 638 (1460)
..+...+..++....++...... ..+.... .....+....+|+..|.++|.... ..+.|+||||++..+++
T Consensus 301 ~~~~~y~~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~ 379 (773)
T PRK13766 301 EALRRYLERLREEARSSGGSKAS-KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAE 379 (773)
T ss_pred HHHHHHHHHHHhhccccCCcHHH-HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHH
Confidence 12222222333222111000000 0000000 011122345789999999999876 56899999999999999
Q ss_pred HHHHHHHhcCCeEEEEecC--------CCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhh
Q 000500 639 LLEDYLTFKKWQYERIDGK--------VGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHA 710 (1460)
Q Consensus 639 iLed~L~~~g~~~~ridGs--------~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~ 710 (1460)
.|.++|...|+++.+++|. ++..+|..++++|+.+. +.+|++|.++++|+|++.+++||+||++|||..
T Consensus 380 ~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~---~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r 456 (773)
T PRK13766 380 KIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGE---FNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIR 456 (773)
T ss_pred HHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCC---CCEEEECChhhcCCCcccCCEEEEeCCCCCHHH
Confidence 9999999999999999997 88889999999998753 458999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCCCceEEEEEecCCCHHHHHHHHHHHHHHHH
Q 000500 711 DLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLE 753 (1460)
Q Consensus 711 d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~a~~K~~L~ 753 (1460)
++|+.||++|.|+ +.||.|++++|+||.++....+|....
T Consensus 457 ~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 457 SIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred HHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 9998888888765 778999999999999987776555543
No 23
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.97 E-value=3.2e-30 Score=322.73 Aligned_cols=256 Identities=25% Similarity=0.455 Sum_probs=197.6
Q ss_pred hcCCcEEEEecCCCCcHHHHHHHHHHHH------------hCC-----CCcEEEEEccccHHHHHHHHHHHCCCC-eEEE
Q 000500 302 SKQTHVILADEMGLGKTIQSIAFLASLF------------GER-----ISPHLVVAPLSTLRNWEREFATWAPQM-NVVM 363 (1460)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~------------~~~-----~~p~LIVvP~sll~qW~~E~~kw~P~l-~vvv 363 (1460)
..+..+++|||||+|||...++....-. ..+ .|.+|||||.+++.||..||.++++.. +|..
T Consensus 372 ~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 372 KHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred cCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEE
Confidence 4456789999999999998877654321 111 247999999999999999999999876 9999
Q ss_pred EEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----------------------h
Q 000500 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----------------------S 421 (1460)
Q Consensus 364 y~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d----------------------~ 421 (1460)
|.|-...-- . .......+|||||||+.++.+ .
T Consensus 452 Y~Girk~~~-------~-------------------~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~ 505 (1394)
T KOG0298|consen 452 YFGIRKTFW-------L-------------------SPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPN 505 (1394)
T ss_pred Eechhhhcc-------c-------------------CchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCC
Confidence 998754311 0 012346899999999999765 2
Q ss_pred cccCCCcceEEEeccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhh
Q 000500 422 ASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ 501 (1460)
Q Consensus 422 ~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~ 501 (1460)
+.|-.+.|-+||+|||+-+....|...+.+..+.+.++|++||||+|+ +.+||.||.||.-..|.....|.+.....-.
T Consensus 506 SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~ 584 (1394)
T KOG0298|consen 506 SPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQ 584 (1394)
T ss_pred CchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHH
Confidence 234456799999999999999999999999999999999999999999 9999999999999999999888776543211
Q ss_pred -HHHHHHHHHhhchhhhhhhhhhhhh--cCCCceeEEEeecCCHHHHHHHHHHH----HHHHHH---HHhc-----C-C-
Q 000500 502 -EEQISRLHRMLAPHLLRRVKKDVMK--ELPPKKELILRVELSSKQKEYYKAIL----TRNYQI---LTRR-----G-G- 564 (1460)
Q Consensus 502 -~~~i~~L~~~L~p~~LRR~K~dv~~--~LP~k~e~iv~v~Ls~~Qk~~Y~~il----~~~~~~---l~~~-----~-~- 564 (1460)
......+++++...+-|+.|-+|.. .+||..+.+....+++.+-.+|+... ...... +.+. . .
T Consensus 585 ~ra~~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~ 664 (1394)
T KOG0298|consen 585 LRAKCEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLA 664 (1394)
T ss_pred HHhhhhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccc
Confidence 1334467888889999999998876 47999888888899988877776542 222221 2110 0 0
Q ss_pred -----chhhHHHHHHHHHHHhCCcc
Q 000500 565 -----AQISLINVVMELRKLCCHPY 584 (1460)
Q Consensus 565 -----~~~~l~nil~~LRk~c~hP~ 584 (1460)
....+.+.+.+||++|+||-
T Consensus 665 ~l~~~~~a~i~~~l~rLRq~Cchpl 689 (1394)
T KOG0298|consen 665 SLSPQLLAIILKWLLRLRQACCHPL 689 (1394)
T ss_pred cCChhhHHHHHHHHHHHHHhhcccc
Confidence 12457888999999999984
No 24
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=7.6e-28 Score=294.27 Aligned_cols=362 Identities=20% Similarity=0.287 Sum_probs=270.1
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCC-e
Q 000500 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM-N 360 (1460)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P~l-~ 360 (1460)
..+|||||.+++.-+...+...+.|++...+|.|||+.++.++..+.. ++|||||. .++.||...+.+++... .
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~----~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~ 109 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR----STLVLVPTKELLDQWAEALKKFLLLNDE 109 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC----CEEEEECcHHHHHHHHHHHHHhcCCccc
Confidence 367999999999766555555899999999999999999999887644 39999995 78899998888887432 2
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCcccccccccccc-ccEEEecHHHHHhhh--cccCCCcceEEEeccc
Q 000500 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIK-FDVLLTSYEMINLDS--ASLKPIKWQCMIVDEG 437 (1460)
Q Consensus 361 vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-fdVvItSYe~l~~d~--~~L~~i~w~~VIvDEA 437 (1460)
+..|.|.... .. ..|+|+||+++.+.. ..+..-.|++||+|||
T Consensus 110 ~g~~~~~~~~----------------------------------~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~ 155 (442)
T COG1061 110 IGIYGGGEKE----------------------------------LEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEV 155 (442)
T ss_pred cceecCceec----------------------------------cCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEcc
Confidence 3333333211 11 469999999998863 3333447999999999
Q ss_pred cccCCcchHHHHHHHhccccc-eEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhh
Q 000500 438 HRLKNKDSKLFSSLKQYSTRH-RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (1460)
Q Consensus 438 HrlKN~~Sk~~~al~~l~~~~-rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~ 516 (1460)
|++.....+. .+..+...+ +|+|||||...+...+..+.. .+.|..
T Consensus 156 Hh~~a~~~~~--~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~-------------------------------~~g~~v 202 (442)
T COG1061 156 HHLPAPSYRR--ILELLSAAYPRLGLTATPEREDGGRIGDLFD-------------------------------LIGPIV 202 (442)
T ss_pred ccCCcHHHHH--HHHhhhcccceeeeccCceeecCCchhHHHH-------------------------------hcCCeE
Confidence 9987654333 333344555 999999996444223332222 333333
Q ss_pred hhhhhhhhh--hcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000500 517 LRRVKKDVM--KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1460)
Q Consensus 517 LRR~K~dv~--~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~ 594 (1460)
......+.. ..|.|.....+.+.++......|.....+....+..... . .
T Consensus 203 y~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~------~----------------------~ 254 (442)
T COG1061 203 YEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT------L----------------------R 254 (442)
T ss_pred eecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh------h----------------------h
Confidence 333333332 358889999999999999999988776665544432221 0 0
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccC
Q 000500 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (1460)
Q Consensus 595 ~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~ 674 (1460)
..............|+..+..++.... ++.+++||+..+...+.|...+...|+ ...++|.++..+|.++++.|....
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~ 332 (442)
T COG1061 255 AENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG 332 (442)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC
Confidence 011112333456678888888888766 889999999999999999999998888 999999999999999999998755
Q ss_pred CCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhccc-CCCCc--eEEEEEecCCCHHHHHHHHHHH
Q 000500 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL-GQTNK--VMIFRLITRGSIEERMMQMTKK 748 (1460)
Q Consensus 675 s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRi-GQ~k~--V~VyrLvt~~TiEE~I~e~a~~ 748 (1460)
+.+|++++.+.+|+|++.|+++|+..|.=++..++|++||+.|. .+++. +..|-++...+.+..+......
T Consensus 333 ---~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 333 ---IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred ---CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 56899999999999999999999999999999999999999994 44444 7788888899988887665554
No 25
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.2e-26 Score=271.12 Aligned_cols=421 Identities=18% Similarity=0.223 Sum_probs=264.2
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEc-cccHHHHHHHHHHHC--CCCe
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWA--PQMN 360 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP-~sll~qW~~E~~kw~--P~l~ 360 (1460)
.+.|.||..-+.-.+ .+|++++..+|||||++|+.++.+.+....+.+|+++| +-|+.|-.+-+.+.+ |...
T Consensus 14 ie~R~YQ~~i~a~al-----~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 14 IEPRLYQLNIAAKAL-----FKNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred ccHHHHHHHHHHHHh-----hcCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 468899998765432 34899999999999999999998776665558999999 588889888898887 5678
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcceEEEecccc
Q 000500 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGH 438 (1460)
Q Consensus 361 vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~--~~L~~i~w~~VIvDEAH 438 (1460)
++.+.|.-..... .. .+.+-.|++.|++++..|. ..+..-.+.+||+||||
T Consensus 89 i~~ltGev~p~~R--~~-------------------------~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH 141 (542)
T COG1111 89 IAALTGEVRPEER--EE-------------------------LWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH 141 (542)
T ss_pred eeeecCCCChHHH--HH-------------------------HHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh
Confidence 8899886543221 11 1235569999999998874 34455578999999999
Q ss_pred ccCCcchHHHHH--HHhcccc-ceEeeccccccCCHHHHHHHHHhhcCCCCC----ChHHHHHH-------HhhhhhHHH
Q 000500 439 RLKNKDSKLFSS--LKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFG----SLEEFQEE-------FKDINQEEQ 504 (1460)
Q Consensus 439 rlKN~~Sk~~~a--l~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~----~~~~F~~~-------f~~~~~~~~ 504 (1460)
|.-+..+-.+-+ ......+ +.|+|||||- ++.+.+-..+.=|..+... ...+-... +-.+.-...
T Consensus 142 RAvGnyAYv~Va~~y~~~~k~~~ilgLTASPG-s~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e 220 (542)
T COG1111 142 RAVGNYAYVFVAKEYLRSAKNPLILGLTASPG-SDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEE 220 (542)
T ss_pred hccCcchHHHHHHHHHHhccCceEEEEecCCC-CCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHH
Confidence 998776654433 2333333 6789999993 3444444444444332211 00000000 001122234
Q ss_pred HHHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCH-HHHHHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHhCC
Q 000500 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSS-KQKEYYKAILTRNYQILTRRG-GAQISLINVVMELRKLCCH 582 (1460)
Q Consensus 505 i~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~-~Qk~~Y~~il~~~~~~l~~~~-~~~~~l~nil~~LRk~c~h 582 (1460)
+..++++|+..+-.|++.--... +...-++ .++++.... .......... ...-.++.++..+-++ .|
T Consensus 221 ~~~ir~~l~~~l~~~Lk~L~~~g--------~~~~~~~~~~kdl~~~~--~~~~~~a~~~~~~~~~~l~~~a~~~kl-~~ 289 (542)
T COG1111 221 IKEIRDLLRDALKPRLKPLKELG--------VIESSSPVSKKDLLELR--QIRLIMAKNEDSDKFRLLSVLAEAIKL-AH 289 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--------ceeccCcccHhHHHHHH--HHHHHhccCccHHHHHHHHHHHHHHHH-HH
Confidence 44444444443333333211110 0011110 111111111 0000000000 0000111111111110 11
Q ss_pred c--------------cccc---CCCC-Cc---------ccchHHHHHHH------hhhhHHHHHHHHHHHHH--HcCceE
Q 000500 583 P--------------YMLE---GVEP-DI---------EDTNESFKQLL------ESSGKLQLLDKMMVKLK--EQGHRV 627 (1460)
Q Consensus 583 P--------------~L~~---~~e~-~~---------~~~~~~~~~lv------~~SgKl~~L~klL~~l~--~~g~KV 627 (1460)
+ ||.. .... .. ......+..++ -..+||..+.+++.... ..+.||
T Consensus 290 a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~Rv 369 (542)
T COG1111 290 ALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRV 369 (542)
T ss_pred HHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceE
Confidence 1 1100 0000 00 00001111111 13579999999999876 557899
Q ss_pred EEEecchhhHHHHHHHHHhcCCeEE-EEec--------CCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCE
Q 000500 628 LIYSQFQHMLDLLEDYLTFKKWQYE-RIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADT 698 (1460)
Q Consensus 628 LIFSq~~~~LdiLed~L~~~g~~~~-ridG--------s~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~ 698 (1460)
|||++|..+++.|.++|...|.... ++-| +|++.+..++|+.|.++.- -+|++|..|.+|||++++|.
T Consensus 370 IVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~---nVLVaTSVgEEGLDIp~vDl 446 (542)
T COG1111 370 IVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEY---NVLVATSVGEEGLDIPEVDL 446 (542)
T ss_pred EEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCc---eEEEEcccccccCCCCcccE
Confidence 9999999999999999999988886 6666 3788899999999987544 48999999999999999999
Q ss_pred EEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCCHHHHHHHHHHHHHHHHH
Q 000500 699 VIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEH 754 (1460)
Q Consensus 699 VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~a~~K~~L~~ 754 (1460)
||+|||.=+|-..+||+||.+| ++.-.||-|+++||-|+.-+..+.+|..-..
T Consensus 447 VifYEpvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~m~ 499 (542)
T COG1111 447 VIFYEPVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQKMI 499 (542)
T ss_pred EEEecCCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 4778889999999999999998888765433
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=7.9e-27 Score=290.40 Aligned_cols=340 Identities=14% Similarity=0.163 Sum_probs=230.4
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHC--CCC
Q 000500 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQM 359 (1460)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~--P~l 359 (1460)
.+.|||||.+++.-+ ..+.++||...+|+|||++++.++..+...+..++|||||. .++.||.++|.+|. |..
T Consensus 112 ~~~~r~~Q~~av~~~----l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~ 187 (501)
T PHA02558 112 KIEPHWYQYDAVYEG----LKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE 187 (501)
T ss_pred cCCCCHHHHHHHHHH----HhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhcccccc
Confidence 368999999998654 24677899999999999998777666555554599999995 88899999999976 322
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEeccccc
Q 000500 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHR 439 (1460)
Q Consensus 360 ~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHr 439 (1460)
.+....|... .....+|+|+|++.+......+. -.|++|||||||+
T Consensus 188 ~~~~i~~g~~---------------------------------~~~~~~I~VaT~qsl~~~~~~~~-~~~~~iIvDEaH~ 233 (501)
T PHA02558 188 AMHKIYSGTA---------------------------------KDTDAPIVVSTWQSAVKQPKEWF-DQFGMVIVDECHL 233 (501)
T ss_pred ceeEEecCcc---------------------------------cCCCCCEEEeeHHHHhhchhhhc-cccCEEEEEchhc
Confidence 2322222211 01245799999999876432211 2678999999999
Q ss_pred cCCcchHHHHHHHhc-cccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhhhh
Q 000500 440 LKNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLR 518 (1460)
Q Consensus 440 lKN~~Sk~~~al~~l-~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~LR 518 (1460)
+... .....+..+ .+.++++|||||-..... .+.+..++.|-... .. ...+ +.
T Consensus 234 ~~~~--~~~~il~~~~~~~~~lGLTATp~~~~~~-~~~~~~~fG~i~~~-----------v~----~~~l---i~----- 287 (501)
T PHA02558 234 FTGK--SLTSIITKLDNCKFKFGLTGSLRDGKAN-ILQYVGLFGDIFKP-----------VT----TSQL---ME----- 287 (501)
T ss_pred ccch--hHHHHHHhhhccceEEEEeccCCCcccc-HHHHHHhhCCceEE-----------ec----HHHH---Hh-----
Confidence 9753 344555666 467899999999533211 11112222221100 00 0000 00
Q ss_pred hhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcccchH
Q 000500 519 RVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNE 598 (1460)
Q Consensus 519 R~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~~~~~ 598 (1460)
...+.+.....+.+..++.....+ .... ...
T Consensus 288 ------~g~l~~~~~~~v~~~~~~~~~~~~-------------~~~~------------------------------~~~ 318 (501)
T PHA02558 288 ------EGQVTDLKINSIFLRYPDEDRVKL-------------KGED------------------------------YQE 318 (501)
T ss_pred ------CCCcCCceEEEEeccCCHHHhhhh-------------cccc------------------------------hHH
Confidence 011222233344444443211000 0000 001
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCe
Q 000500 599 SFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRF 678 (1460)
Q Consensus 599 ~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~ 678 (1460)
.+..+.....+..++.+++..+...|+++|||+..+..++.|.+.|...|+++..++|+++.++|..+++.|+.+. ..
T Consensus 319 ~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~--~~ 396 (501)
T PHA02558 319 EIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGK--GI 396 (501)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCC--Ce
Confidence 1122333445666777777777778999999999999999999999999999999999999999999999997532 23
Q ss_pred eEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCC-ceEEEEEecCCC
Q 000500 679 CFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN-KVMIFRLITRGS 737 (1460)
Q Consensus 679 vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k-~V~VyrLvt~~T 737 (1460)
+++.|++..|+|+|++.+|+||+++|.-+...++|++||++|.|..| .+.||.|+-.-.
T Consensus 397 vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 397 IIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred EEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 34444599999999999999999999999999999999999998765 789999996433
No 27
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=99.96 E-value=1.3e-28 Score=245.49 Aligned_cols=133 Identities=56% Similarity=0.955 Sum_probs=122.8
Q ss_pred CCCCCCccccccCCCCCCCCCccccccchhhcCCChHHHHHHHHHHHhcCCCCcchhhhchhhcCCCHHHHHHHHHHHHH
Q 000500 936 QPGRKPNKKRSRVDSMEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLT 1015 (1460)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~~L~~~e~~~l~v~GF~~w~Rr~Fv~a~~KyG~~~~~~~~ia~el~~Ks~eEvk~Ya~lF~~ 1015 (1460)
...+++++++.| ++.+++||++++++++.|+|||..||+.|++++||||+++++|.|+.++|.+||.+||++|+.+||.
T Consensus 9 ~~~r~~~rkk~r-~~~~~pPLm~~~g~~l~VlGFn~rQR~~Fln~vMR~G~~~f~~~w~~~~Lr~Ks~~ei~aY~~LFm~ 87 (145)
T PF06461_consen 9 ETGRRPSRKKRR-DNKDPPPLMAGVGGQLEVLGFNPRQRKAFLNAVMRYGMGAFDWKWFVPRLRGKSEKEIRAYGSLFMR 87 (145)
T ss_pred cccccccccccc-cCCCCCCccccCCCceEEeccCHHHHHHHHHHHHHHCcCcccchHHhhhhccccHHHHHHHHHHHHH
Confidence 345566666665 5556799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCC-CCCccCCCCcCcchhhHHHHHHHHHHHHHHHHHhccCCCCCCCccc
Q 000500 1016 HITEDITD-SPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTD 1069 (1460)
Q Consensus 1016 ~~~E~i~d-~e~~~d~i~k~~~k~~~vl~Ri~~~~ll~~Kv~~~~~~p~~~~~~~ 1069 (1460)
|+||+++| +++|+|||||+++++++||+||++|+||++||++|+.+|..+.||.
T Consensus 88 HL~E~~~d~s~tfsDGVPkEgl~~q~VL~RIgvm~LIr~KV~e~e~~ng~~s~p~ 142 (145)
T PF06461_consen 88 HLCEPGTDNSDTFSDGVPKEGLRRQDVLVRIGVMSLIRKKVQEFEHINGTWSFPE 142 (145)
T ss_pred HhcCCCcCCCCccCCCCccCCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCccCch
Confidence 99999988 9999999999999999999999999999999999999998877763
No 28
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.92 E-value=1.6e-25 Score=225.48 Aligned_cols=144 Identities=29% Similarity=0.479 Sum_probs=124.4
Q ss_pred CCccChHHHHHHHHHHHHhccchhHHhhhCcccchHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCchhhhhcCCCCCC
Q 000500 1081 GKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPVPGASSQAPNGANSANPEALQMQGNSTGN 1160 (1460)
Q Consensus 1081 ~~~w~~eeD~~LL~gi~k~GyG~We~Ik~D~~l~l~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1160 (1460)
..+|+.+||+|||.||..||||+|+.|.+||+ |.++|+||.+ ..+- |+
T Consensus 3 ~~iw~r~hdywll~gi~~hgy~rwqdi~nd~~------------f~IiNEPFk~---e~~k---------------gn-- 50 (173)
T PF08074_consen 3 YEIWHRRHDYWLLAGIVKHGYGRWQDIQNDPR------------FAIINEPFKT---ESQK---------------GN-- 50 (173)
T ss_pred hhhhhhhhhHHHHhHHhhccchhHHHHhcCCc------------eeeecccccc---cccc---------------cc--
Confidence 36899999999999999999999999999999 9999999982 2111 11
Q ss_pred CCcccCccCCcchhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHhhhCCCCCCCCCCCCCCcccccc
Q 000500 1161 DSAAAGVQGTTDAANQAQVYQDSSVLYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDDVKSNEIPSEEPESERKT 1240 (1460)
Q Consensus 1161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~r~~~~e~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 (1460)
|-+|| ++|+.+||+|||+||.+|+|++++++ ++..+
T Consensus 51 ----------------------------fle~K---NkFLaRRfKLLEQaLvIEEqLrRAa~------lnl~~------- 86 (173)
T PF08074_consen 51 ----------------------------FLEMK---NKFLARRFKLLEQALVIEEQLRRAAY------LNLSQ------- 86 (173)
T ss_pred ----------------------------hHHHH---HHHHHHHHHHHHHHHhhhccccchhh------ccCcC-------
Confidence 33899 55999999999999999999999995 44443
Q ss_pred cCCCCCCccchhhhhhhccchhhHHHHHhhhccCCCcccccHhHHHHHHHHHhhhcchhhhhhhcCCcchhhHHHHhhhH
Q 000500 1241 TERPSPTSMEIDSQMVDQLPKLEAIKEISAAACDSDADRLGLAQHYNEMCKVLEENVHEVVKTSLTSQPASAQLRTNLQL 1320 (1460)
Q Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1320 (1460)
|.+...+.|++.|.+++++++.+++.+..+..||+||+.+|+++|.|
T Consensus 87 ---------------------------------~p~~p~~~L~~~fae~e~laeshq~l~kes~~gnk~a~~vl~kvL~q 133 (173)
T PF08074_consen 87 ---------------------------------DPSHPVMALNARFAELECLAESHQHLSKESLAGNKPANAVLHKVLNQ 133 (173)
T ss_pred ---------------------------------CCCCchHHHhhhhhhhhhccchhhhcchhhhCCCCCccHHHHHHHHH
Confidence 33344678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhc
Q 000500 1321 LETLCEDVNQILS 1333 (1460)
Q Consensus 1321 ~~~~~~~~~~~~~ 1333 (1460)
||+|++||-.-.+
T Consensus 134 leelLsDMKaDV~ 146 (173)
T PF08074_consen 134 LEELLSDMKADVT 146 (173)
T ss_pred HHHHHHHhhcccc
Confidence 9999999977443
No 29
>PTZ00110 helicase; Provisional
Probab=99.90 E-value=4.3e-22 Score=250.00 Aligned_cols=319 Identities=17% Similarity=0.242 Sum_probs=215.3
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHH-HHHHHHHhC-----CCC-cEEEEEcc-ccHHHHHHHHHHH
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGE-----RIS-PHLVVAPL-STLRNWEREFATW 355 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~L~~~-----~~~-p~LIVvP~-sll~qW~~E~~kw 355 (1460)
..+.|+|.+++..+ ..+.++|+..++|+|||++.+ ..+..+... ..+ .+|||||. .|..|+..++.++
T Consensus 151 ~~pt~iQ~~aip~~----l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~ 226 (545)
T PTZ00110 151 TEPTPIQVQGWPIA----LSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKF 226 (545)
T ss_pred CCCCHHHHHHHHHH----hcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHH
Confidence 35889999998665 578899999999999999864 344444332 123 47999995 7778999999998
Q ss_pred CCC--CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc--ccCCCcceE
Q 000500 356 APQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQC 431 (1460)
Q Consensus 356 ~P~--l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~--~L~~i~w~~ 431 (1460)
... +++.+.+|.......+... ....+|+|+|++.+..... .+.--...+
T Consensus 227 ~~~~~i~~~~~~gg~~~~~q~~~l--------------------------~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~ 280 (545)
T PTZ00110 227 GASSKIRNTVAYGGVPKRGQIYAL--------------------------RRGVEILIACPGRLIDFLESNVTNLRRVTY 280 (545)
T ss_pred hcccCccEEEEeCCCCHHHHHHHH--------------------------HcCCCEEEECHHHHHHHHHcCCCChhhCcE
Confidence 743 5566666655443332221 1246899999988754321 122234678
Q ss_pred EEeccccccCCcc--hHHHHHHHhccc-cceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000500 432 MIVDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1460)
Q Consensus 432 VIvDEAHrlKN~~--Sk~~~al~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L 508 (1460)
|||||||++-... ..+...+..+.. ...+++|||.- .++-.+..
T Consensus 281 lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p----~~v~~l~~----------------------------- 327 (545)
T PTZ00110 281 LVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWP----KEVQSLAR----------------------------- 327 (545)
T ss_pred EEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCC----HHHHHHHH-----------------------------
Confidence 9999999987543 233444444433 34688999951 11111100
Q ss_pred HHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000500 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1460)
Q Consensus 509 ~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~ 588 (1460)
.++. ..| ..+.+..... .. .. .+++ .+.
T Consensus 328 -~l~~-------------~~~----v~i~vg~~~l--~~---------------~~----------~i~q----~~~--- 355 (545)
T PTZ00110 328 -DLCK-------------EEP----VHVNVGSLDL--TA---------------CH----------NIKQ----EVF--- 355 (545)
T ss_pred -HHhc-------------cCC----EEEEECCCcc--cc---------------CC----------CeeE----EEE---
Confidence 0000 000 0011100000 00 00 0000 000
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHH
Q 000500 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1460)
Q Consensus 589 ~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id 668 (1460)
.+....|...|..+|..+...+.++||||+.....+.|...|...|++...++|.++..+|..+++
T Consensus 356 --------------~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~ 421 (545)
T PTZ00110 356 --------------VVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLN 421 (545)
T ss_pred --------------EEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHH
Confidence 011223556666777776667889999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCC
Q 000500 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1460)
Q Consensus 669 ~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1460)
.|..+. ..+||+|.++++|||++.+++||+||.++++..++|++||++|.|.+-.+ |-|++.+
T Consensus 422 ~F~~G~---~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~a--i~~~~~~ 484 (545)
T PTZ00110 422 EFKTGK---SPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGAS--YTFLTPD 484 (545)
T ss_pred HHhcCC---CcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEECcc
Confidence 998644 34899999999999999999999999999999999999999999986544 5566665
No 30
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=6.6e-22 Score=244.99 Aligned_cols=308 Identities=18% Similarity=0.164 Sum_probs=208.2
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEE
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P~l~vv 362 (1460)
..++|+|.++++-+ ..++++++..++|.|||+..+.-+. .. .+..|||+|+ +++.+|.+.+... ++.+.
T Consensus 10 ~~~r~~Q~~ai~~~----l~g~dvlv~apTGsGKTl~y~lp~l--~~--~~~~lVi~P~~~L~~dq~~~l~~~--gi~~~ 79 (470)
T TIGR00614 10 SSFRPVQLEVINAV----LLGRDCFVVMPTGGGKSLCYQLPAL--CS--DGITLVISPLISLMEDQVLQLKAS--GIPAT 79 (470)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCCcHhHHHHHHHH--Hc--CCcEEEEecHHHHHHHHHHHHHHc--CCcEE
Confidence 46999999999876 4677999999999999987543322 22 3478999996 7788898888865 45566
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh---ccc-CCCcceEEEecccc
Q 000500 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASL-KPIKWQCMIVDEGH 438 (1460)
Q Consensus 363 vy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~---~~L-~~i~w~~VIvDEAH 438 (1460)
.+.+.........-... .....++++++|++.+.... ..+ ......+|||||||
T Consensus 80 ~l~~~~~~~~~~~i~~~----------------------~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH 137 (470)
T TIGR00614 80 FLNSSQSKEQQKNVLTD----------------------LKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAH 137 (470)
T ss_pred EEeCCCCHHHHHHHHHH----------------------HhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCc
Confidence 66665443321111000 01245789999999886532 222 33467899999999
Q ss_pred ccCCcch-------HHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHh
Q 000500 439 RLKNKDS-------KLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1460)
Q Consensus 439 rlKN~~S-------k~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~ 511 (1460)
++..... .+......+.....++|||||-.....++...+.+-.|..+... |
T Consensus 138 ~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s------~--------------- 196 (470)
T TIGR00614 138 CISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS------F--------------- 196 (470)
T ss_pred ccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC------C---------------
Confidence 9865432 12222233445668999999854444444433332222111000 0
Q ss_pred hchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000500 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1460)
Q Consensus 512 L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~ 591 (1460)
.-|.. .+.+.-..
T Consensus 197 ---------------~r~nl-~~~v~~~~--------------------------------------------------- 209 (470)
T TIGR00614 197 ---------------DRPNL-YYEVRRKT--------------------------------------------------- 209 (470)
T ss_pred ---------------CCCCc-EEEEEeCC---------------------------------------------------
Confidence 00000 00000000
Q ss_pred CcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHh
Q 000500 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1460)
Q Consensus 592 ~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn 671 (1460)
...+..+.+++.+ ...|.++||||......+.|...|...|+.+..++|+++..+|..+++.|.
T Consensus 210 ---------------~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~ 273 (470)
T TIGR00614 210 ---------------PKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQ 273 (470)
T ss_pred ---------------ccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHH
Confidence 0011112222221 234678899999999999999999999999999999999999999999998
Q ss_pred ccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEE
Q 000500 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1460)
Q Consensus 672 ~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~Vy 730 (1460)
.+ .+.+|++|.+.|.|||++.+++||+|+++.++..+.|++||++|.|+...+.+|
T Consensus 274 ~g---~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 274 RD---EIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred cC---CCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 64 345899999999999999999999999999999999999999999988766654
No 31
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.89 E-value=1.2e-21 Score=241.76 Aligned_cols=310 Identities=16% Similarity=0.228 Sum_probs=205.9
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHH-HHHHhCC-----C--CcEEEEEcc-ccHHHHHHHHHH
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER-----I--SPHLVVAPL-STLRNWEREFAT 354 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l-~~L~~~~-----~--~p~LIVvP~-sll~qW~~E~~k 354 (1460)
..+.|+|.+++.-+ ..+.++|+...+|+|||+..+..+ ..+.... . ..+|||||. .|..||..++..
T Consensus 22 ~~pt~iQ~~ai~~i----l~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~ 97 (456)
T PRK10590 22 REPTPIQQQAIPAV----LEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRD 97 (456)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHH
Confidence 35889999998766 467899999999999999865444 4433221 1 158999996 777899999988
Q ss_pred HCC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcce
Q 000500 355 WAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQ 430 (1460)
Q Consensus 355 w~P--~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~--~~L~~i~w~ 430 (1460)
+.. .+.++.++|.......+... ...++|+|+|++.+.... ..+.--..+
T Consensus 98 ~~~~~~~~~~~~~gg~~~~~~~~~l--------------------------~~~~~IiV~TP~rL~~~~~~~~~~l~~v~ 151 (456)
T PRK10590 98 YSKYLNIRSLVVFGGVSINPQMMKL--------------------------RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151 (456)
T ss_pred HhccCCCEEEEEECCcCHHHHHHHH--------------------------cCCCcEEEEChHHHHHHHHcCCcccccce
Confidence 763 45666667665433222111 135789999999885432 222233568
Q ss_pred EEEeccccccCCcc--hHHHHHHHhcccc-ceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHH
Q 000500 431 CMIVDEGHRLKNKD--SKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1460)
Q Consensus 431 ~VIvDEAHrlKN~~--Sk~~~al~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~ 507 (1460)
+|||||||++-... ..+...+..+... ..+++|||+-. .+.++. ..+..
T Consensus 152 ~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~-~~~~l~---~~~~~------------------------ 203 (456)
T PRK10590 152 ILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSD-DIKALA---EKLLH------------------------ 203 (456)
T ss_pred EEEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcH-HHHHHH---HHHcC------------------------
Confidence 99999999986543 2333444445433 46899999621 111111 00000
Q ss_pred HHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccccc
Q 000500 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (1460)
Q Consensus 508 L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~ 587 (1460)
.|..+.-..... ..+........+
T Consensus 204 -----~~~~i~~~~~~~--~~~~i~~~~~~~------------------------------------------------- 227 (456)
T PRK10590 204 -----NPLEIEVARRNT--ASEQVTQHVHFV------------------------------------------------- 227 (456)
T ss_pred -----CCeEEEEecccc--cccceeEEEEEc-------------------------------------------------
Confidence 000000000000 000000000000
Q ss_pred CCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHH
Q 000500 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (1460)
Q Consensus 588 ~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~I 667 (1460)
....|..+|..++.. ....++|||++.....+.|...|...|+....++|.++..+|..++
T Consensus 228 -----------------~~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l 288 (456)
T PRK10590 228 -----------------DKKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRAL 288 (456)
T ss_pred -----------------CHHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH
Confidence 011122333333332 2346899999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEE
Q 000500 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1460)
Q Consensus 668 d~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~V 729 (1460)
+.|.++ .+.+|++|.++++|||++.+++||+||++.++..|+|++||++|.|.+..+.+
T Consensus 289 ~~F~~g---~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~ 347 (456)
T PRK10590 289 ADFKSG---DIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALS 347 (456)
T ss_pred HHHHcC---CCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEE
Confidence 999764 34589999999999999999999999999999999999999999998765443
No 32
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.89 E-value=2.8e-21 Score=239.19 Aligned_cols=313 Identities=17% Similarity=0.287 Sum_probs=215.1
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHH-HHHHHHHhCCCC-cEEEEEcc-ccHHHHHHHHHHHC---C
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERIS-PHLVVAPL-STLRNWEREFATWA---P 357 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~L~~~~~~-p~LIVvP~-sll~qW~~E~~kw~---P 357 (1460)
.++.|+|.+++..+ ..+.+.|+..++|+|||..++ .++..+...... ..||+||. .+..||..++..+. +
T Consensus 25 ~~~t~iQ~~ai~~~----l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 100 (460)
T PRK11776 25 TEMTPIQAQSLPAI----LAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIP 100 (460)
T ss_pred CCCCHHHHHHHHHH----hcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 35889999999877 578899999999999998754 444444333223 68999995 77789999988764 5
Q ss_pred CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc--ccCCCcceEEEec
Q 000500 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVD 435 (1460)
Q Consensus 358 ~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~--~L~~i~w~~VIvD 435 (1460)
++++..++|.......+... ....+|+|+|++.+..... .+.--.+.+||+|
T Consensus 101 ~~~v~~~~Gg~~~~~~~~~l--------------------------~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViD 154 (460)
T PRK11776 101 NIKVLTLCGGVPMGPQIDSL--------------------------EHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLD 154 (460)
T ss_pred CcEEEEEECCCChHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEE
Confidence 78888888876554333221 1356899999998865422 2222356899999
Q ss_pred cccccCCcc--hHHHHHHHhccc-cceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhh
Q 000500 436 EGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 512 (1460)
Q Consensus 436 EAHrlKN~~--Sk~~~al~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L 512 (1460)
|||++-... ..+...+..+.. ...+++|||+-. ++-.+.. . .+
T Consensus 155 Ead~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~----~~~~l~~---------------~---------------~~ 200 (460)
T PRK11776 155 EADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPE----GIAAISQ---------------R---------------FQ 200 (460)
T ss_pred CHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcH----HHHHHHH---------------H---------------hc
Confidence 999986543 234444444443 356899999721 1111000 0 00
Q ss_pred c-hhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000500 513 A-PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1460)
Q Consensus 513 ~-p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~ 591 (1460)
. |..+.- ......+......+.+
T Consensus 201 ~~~~~i~~---~~~~~~~~i~~~~~~~----------------------------------------------------- 224 (460)
T PRK11776 201 RDPVEVKV---ESTHDLPAIEQRFYEV----------------------------------------------------- 224 (460)
T ss_pred CCCEEEEE---CcCCCCCCeeEEEEEe-----------------------------------------------------
Confidence 0 000000 0000000000111000
Q ss_pred CcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHh
Q 000500 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1460)
Q Consensus 592 ~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn 671 (1460)
....|+..|..+|.. ..+.++||||+.....+.|...|...|+....++|+++..+|+.+++.|.
T Consensus 225 -------------~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~ 289 (460)
T PRK11776 225 -------------SPDERLPALQRLLLH--HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFA 289 (460)
T ss_pred -------------CcHHHHHHHHHHHHh--cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 011245555555543 23568999999999999999999999999999999999999999999998
Q ss_pred ccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCC
Q 000500 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1460)
Q Consensus 672 ~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1460)
++. ..+|++|.++++|||++.+++||+||.+.++..++|++||++|.|+.-. .|.|++.+
T Consensus 290 ~g~---~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~--ai~l~~~~ 349 (460)
T PRK11776 290 NRS---CSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGL--ALSLVAPE 349 (460)
T ss_pred cCC---CcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcce--EEEEEchh
Confidence 643 3489999999999999999999999999999999999999999997644 45566554
No 33
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.89 E-value=1.8e-21 Score=241.67 Aligned_cols=316 Identities=18% Similarity=0.286 Sum_probs=211.3
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHH-HHHHHHHhCC--------CCcEEEEEcc-ccHHHHHHHHH
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGER--------ISPHLVVAPL-STLRNWEREFA 353 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~L~~~~--------~~p~LIVvP~-sll~qW~~E~~ 353 (1460)
..+.++|.+++..+ ..|.++|++..+|+|||+..+ .++..+.... ....|||+|. .+..|+.+.+.
T Consensus 108 ~~~~~iQ~~ai~~~----~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~ 183 (475)
T PRK01297 108 PYCTPIQAQVLGYT----LAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAA 183 (475)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 35899999998866 678999999999999998764 3444444321 2368999995 77789999888
Q ss_pred HHCC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc--ccCCCcc
Q 000500 354 TWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKW 429 (1460)
Q Consensus 354 kw~P--~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~--~L~~i~w 429 (1460)
.+.. ++++..++|+......++.. ....++|+|+|++++..... .+.--..
T Consensus 184 ~l~~~~~~~v~~~~gg~~~~~~~~~~-------------------------~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l 238 (475)
T PRK01297 184 ALTKYTGLNVMTFVGGMDFDKQLKQL-------------------------EARFCDILVATPGRLLDFNQRGEVHLDMV 238 (475)
T ss_pred HhhccCCCEEEEEEccCChHHHHHHH-------------------------hCCCCCEEEECHHHHHHHHHcCCcccccC
Confidence 7753 46788888875443333221 11357899999999864322 1112245
Q ss_pred eEEEeccccccCCcc--hHHHHHHHhcc---ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHH
Q 000500 430 QCMIVDEGHRLKNKD--SKLFSSLKQYS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ 504 (1460)
Q Consensus 430 ~~VIvDEAHrlKN~~--Sk~~~al~~l~---~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~ 504 (1460)
.+|||||||++.+.. ..+...+..+. ....+++|||.- +++.++. . .|.
T Consensus 239 ~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~-~~~~~~~---~---------------~~~------- 292 (475)
T PRK01297 239 EVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFT-DDVMNLA---K---------------QWT------- 292 (475)
T ss_pred ceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecC-HHHHHHH---H---------------Hhc-------
Confidence 789999999997543 22334444443 235789999952 1111111 0 000
Q ss_pred HHHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcc
Q 000500 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY 584 (1460)
Q Consensus 505 i~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~ 584 (1460)
..|. .+.+.... ..... +. .|-+
T Consensus 293 -------~~~~-------------------~v~~~~~~------------------~~~~~----------~~---~~~~ 315 (475)
T PRK01297 293 -------TDPA-------------------IVEIEPEN------------------VASDT----------VE---QHVY 315 (475)
T ss_pred -------cCCE-------------------EEEeccCc------------------CCCCc----------cc---EEEE
Confidence 0000 00000000 00000 00 0000
Q ss_pred cccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHH
Q 000500 585 MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ 664 (1460)
Q Consensus 585 L~~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq 664 (1460)
. +..+.|..+|..++.. ..+.++|||++.....+.|...|...|+.+..++|.++..+|.
T Consensus 316 ~------------------~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~ 375 (475)
T PRK01297 316 A------------------VAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRI 375 (475)
T ss_pred E------------------ecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHH
Confidence 0 0112344445555443 2346999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCC
Q 000500 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1460)
Q Consensus 665 ~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1460)
++++.|.++. ..+|++|.++++|||++.+++||+|+.++++..++|+.||++|.|+.-.+ +-|++.+
T Consensus 376 ~~~~~Fr~G~---~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~--i~~~~~~ 442 (475)
T PRK01297 376 KTLEGFREGK---IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVS--ISFAGED 442 (475)
T ss_pred HHHHHHhCCC---CcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceE--EEEecHH
Confidence 9999997643 44899999999999999999999999999999999999999999986543 3455443
No 34
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.89 E-value=1.9e-21 Score=243.21 Aligned_cols=315 Identities=15% Similarity=0.207 Sum_probs=208.4
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHH-HHHHHhC--------CCCcEEEEEcc-ccHHHHHHHHH
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGE--------RISPHLVVAPL-STLRNWEREFA 353 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~-l~~L~~~--------~~~p~LIVvP~-sll~qW~~E~~ 353 (1460)
..+.|+|.+++..+ ..++++|+..++|+|||+.++.. +..+... .....|||+|. .|..|+.+++.
T Consensus 142 ~~ptpiQ~~aip~i----l~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAA----LSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHH----hcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 35889999998776 47889999999999999886543 3343321 11268999996 67788888888
Q ss_pred HHCCC--CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc--ccCCCcc
Q 000500 354 TWAPQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKW 429 (1460)
Q Consensus 354 kw~P~--l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~--~L~~i~w 429 (1460)
.+... ++++.+.|.......+... ...++|+|+|++.+..... .+.--..
T Consensus 218 ~l~~~~~~~~~~~~gG~~~~~q~~~l--------------------------~~~~~IiV~TPgrL~~~l~~~~~~l~~v 271 (518)
T PLN00206 218 VLGKGLPFKTALVVGGDAMPQQLYRI--------------------------QQGVELIVGTPGRLIDLLSKHDIELDNV 271 (518)
T ss_pred HHhCCCCceEEEEECCcchHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCccchhe
Confidence 87643 4555555544332222111 1247899999988754311 2222345
Q ss_pred eEEEeccccccCCc--chHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHH
Q 000500 430 QCMIVDEGHRLKNK--DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1460)
Q Consensus 430 ~~VIvDEAHrlKN~--~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~ 507 (1460)
.+|||||||++... ...+...+..+.....+++|||.-. .+.. +...
T Consensus 272 ~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~-~v~~---l~~~--------------------------- 320 (518)
T PLN00206 272 SVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVSP-EVEK---FASS--------------------------- 320 (518)
T ss_pred eEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCH-HHHH---HHHH---------------------------
Confidence 78999999998653 2344555566666788999999621 1110 0000
Q ss_pred HHHhhchhhhhhhhhhhhhcCCCc--eeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccc
Q 000500 508 LHRMLAPHLLRRVKKDVMKELPPK--KELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1460)
Q Consensus 508 L~~~L~p~~LRR~K~dv~~~LP~k--~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L 585 (1460)
++...+.-.... ...+.. ....+.+.
T Consensus 321 ---~~~~~~~i~~~~---~~~~~~~v~q~~~~~~---------------------------------------------- 348 (518)
T PLN00206 321 ---LAKDIILISIGN---PNRPNKAVKQLAIWVE---------------------------------------------- 348 (518)
T ss_pred ---hCCCCEEEEeCC---CCCCCcceeEEEEecc----------------------------------------------
Confidence 000000000000 000000 01111111
Q ss_pred ccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHh-cCCeEEEEecCCCHHHHH
Q 000500 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQ 664 (1460)
Q Consensus 586 ~~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~-~g~~~~ridGs~~~~eRq 664 (1460)
...|...|..+|........++|||++.....+.|...|.. .|+++..++|+++..+|.
T Consensus 349 --------------------~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~ 408 (518)
T PLN00206 349 --------------------TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERR 408 (518)
T ss_pred --------------------chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHH
Confidence 11122334444444333346899999999999999999974 699999999999999999
Q ss_pred HHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCC
Q 000500 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1460)
Q Consensus 665 ~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1460)
.+++.|.++. +-+|++|.++++|||++.+++||+||++.++..++|++||++|.|..-. ++.|++.+
T Consensus 409 ~il~~Fr~G~---~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~--ai~f~~~~ 475 (518)
T PLN00206 409 EVMKSFLVGE---VPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGT--AIVFVNEE 475 (518)
T ss_pred HHHHHHHCCC---CCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeE--EEEEEchh
Confidence 9999998744 3489999999999999999999999999999999999999999997544 44566543
No 35
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.89 E-value=1.8e-20 Score=231.15 Aligned_cols=409 Identities=18% Similarity=0.246 Sum_probs=238.5
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCC-CcEEEEEcc-ccHHHHHHHHHHHCCCCeE
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI-SPHLVVAPL-STLRNWEREFATWAPQMNV 361 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~-~p~LIVvP~-sll~qW~~E~~kw~P~l~v 361 (1460)
..||+||.+-+.-. . ++|.|+|..||+|||..|+.++...++... +.++++||. .++.|-...|..++-...+
T Consensus 61 ~~lR~YQ~eivq~A----L-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~ 135 (746)
T KOG0354|consen 61 LELRNYQEELVQPA----L-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSV 135 (746)
T ss_pred ccccHHHHHHhHHh----h-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCcccc
Confidence 56999999987644 3 899999999999999999888777666543 599999996 5667777778777644555
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCC---CcceEEEecccc
Q 000500 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKP---IKWQCMIVDEGH 438 (1460)
Q Consensus 362 vvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~---i~w~~VIvDEAH 438 (1460)
....|+...+.... ......+|++.|.+.+..+...... -.|.++||||||
T Consensus 136 T~~l~~~~~~~~r~--------------------------~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H 189 (746)
T KOG0354|consen 136 TGQLGDTVPRSNRG--------------------------EIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH 189 (746)
T ss_pred eeeccCccCCCchh--------------------------hhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc
Confidence 55555533221100 1124568999999999887543322 348999999999
Q ss_pred ccCCcc--hHHHHHHHhccc--cceEeeccccccCCHHHHHHHHHhhcCCCC-CChHHHHHHHhh------------hhh
Q 000500 439 RLKNKD--SKLFSSLKQYST--RHRVLLTGTPLQNNLDELFMLMHFLDAGKF-GSLEEFQEEFKD------------INQ 501 (1460)
Q Consensus 439 rlKN~~--Sk~~~al~~l~~--~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f-~~~~~F~~~f~~------------~~~ 501 (1460)
|..... +...+.+...+. ...|+|||||- ++....-+.+.=|....- .....-...|.. ...
T Consensus 190 ra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~ 268 (746)
T KOG0354|consen 190 RTSKNHPYNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCE 268 (746)
T ss_pred cccccccHHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhh
Confidence 985543 334444444432 25789999998 666666555544443310 011111222221 112
Q ss_pred HHHHHHHHHhhchhhhhhhhhhhhh-cCCC-ceeE-EEeec------CCHHHHH-HHHHHHHH-HHHHHHhcCCchhhHH
Q 000500 502 EEQISRLHRMLAPHLLRRVKKDVMK-ELPP-KKEL-ILRVE------LSSKQKE-YYKAILTR-NYQILTRRGGAQISLI 570 (1460)
Q Consensus 502 ~~~i~~L~~~L~p~~LRR~K~dv~~-~LP~-k~e~-iv~v~------Ls~~Qk~-~Y~~il~~-~~~~l~~~~~~~~~l~ 570 (1460)
......|..+++|+|.+-....+.. ..+. ..+. ++..+ .-..|+- +|..++.. +...+...+-. +.
T Consensus 269 ~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir---~~ 345 (746)
T KOG0354|consen 269 RDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIR---FV 345 (746)
T ss_pred hhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchh---hH
Confidence 2334556677777665433222211 0000 0000 00000 0001110 11111111 01111111000 00
Q ss_pred HHHHHHHHHhCCc----ccccCCCCCc-ccchH---HHHHHH----hhhhHHHHHHHHHHHHHHc--CceEEEEecchhh
Q 000500 571 NVVMELRKLCCHP----YMLEGVEPDI-EDTNE---SFKQLL----ESSGKLQLLDKMMVKLKEQ--GHRVLIYSQFQHM 636 (1460)
Q Consensus 571 nil~~LRk~c~hP----~L~~~~e~~~-~~~~~---~~~~lv----~~SgKl~~L~klL~~l~~~--g~KVLIFSq~~~~ 636 (1460)
+.+..+.....-- |+....+... ..... .+..+. ...+|+..|.++|...... ..|+|||+.+...
T Consensus 346 ~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~s 425 (746)
T KOG0354|consen 346 DALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRES 425 (746)
T ss_pred HHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHH
Confidence 1111110000000 0000000000 00000 011111 2367999999988877654 5799999999999
Q ss_pred HHHHHHHHH-h--cCCeEEEEec--------CCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCC
Q 000500 637 LDLLEDYLT-F--KKWQYERIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD 705 (1460)
Q Consensus 637 LdiLed~L~-~--~g~~~~ridG--------s~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~Dsd 705 (1460)
++.|..+|. . -|++...+-| +++..+.+++|+.|+++..+ +|++|..|.+|||+..||.||-||..
T Consensus 426 a~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~lVIcYd~~ 502 (746)
T KOG0354|consen 426 ALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECNLVICYDYS 502 (746)
T ss_pred HHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCcccccEEEEecCC
Confidence 999999997 2 3555555555 46788899999999885544 89999999999999999999999999
Q ss_pred CChhhHHHHHHhhcccCCCCceEEEEEec
Q 000500 706 WNPHADLQAMARAHRLGQTNKVMIFRLIT 734 (1460)
Q Consensus 706 WNP~~d~QAigRahRiGQ~k~V~VyrLvt 734 (1460)
-||...+||+|| +| ++.-.++.|.+
T Consensus 503 snpIrmIQrrGR-gR---a~ns~~vll~t 527 (746)
T KOG0354|consen 503 SNPIRMVQRRGR-GR---ARNSKCVLLTT 527 (746)
T ss_pred ccHHHHHHHhcc-cc---ccCCeEEEEEc
Confidence 999999999999 66 55555555666
No 36
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.89 E-value=5.5e-21 Score=234.89 Aligned_cols=312 Identities=16% Similarity=0.212 Sum_probs=207.9
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHH-HHHHHhC-----CCCcEEEEEcc-ccHHHHHHHHHHHC
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGE-----RISPHLVVAPL-STLRNWEREFATWA 356 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~-l~~L~~~-----~~~p~LIVvP~-sll~qW~~E~~kw~ 356 (1460)
..+.++|.+++..+ ..+.++|+...+|.|||+.++.. +..+... +...+||++|. .+..|+.+.+..|.
T Consensus 22 ~~p~~iQ~~ai~~~----~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~ 97 (434)
T PRK11192 22 TRPTAIQAEAIPPA----LDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA 97 (434)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH
Confidence 35889999998766 46788999999999999986543 4444321 12378999996 67788888777765
Q ss_pred C--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcceEE
Q 000500 357 P--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCM 432 (1460)
Q Consensus 357 P--~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~--~~L~~i~w~~V 432 (1460)
. ++++..++|........... ...++|+|+|++.+.... ..+..-.+++|
T Consensus 98 ~~~~~~v~~~~gg~~~~~~~~~l--------------------------~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~l 151 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNHAEVF--------------------------SENQDIVVATPGRLLQYIKEENFDCRAVETL 151 (434)
T ss_pred ccCCcEEEEEECCCCHHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCcCcccCCEE
Confidence 3 57788888875443221110 135689999998886532 22333356789
Q ss_pred EeccccccCCcc--hHHHHHHHhccc-cceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000500 433 IVDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1460)
Q Consensus 433 IvDEAHrlKN~~--Sk~~~al~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~ 509 (1460)
||||||++-... ..+...+..+.. ...+++|||+-...+.++. ..+
T Consensus 152 ViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~------------------~~~------------- 200 (434)
T PRK11192 152 ILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFA------------------ERL------------- 200 (434)
T ss_pred EEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHH------------------HHH-------------
Confidence 999999986543 222223333322 3458999997321111110 000
Q ss_pred HhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCC
Q 000500 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1460)
Q Consensus 510 ~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~ 589 (1460)
+.. | . .+.+....... ....|-+...
T Consensus 201 --~~~--------------~--~--~i~~~~~~~~~--------------------------------~~i~~~~~~~-- 226 (434)
T PRK11192 201 --LND--------------P--V--EVEAEPSRRER--------------------------------KKIHQWYYRA-- 226 (434)
T ss_pred --ccC--------------C--E--EEEecCCcccc--------------------------------cCceEEEEEe--
Confidence 000 0 0 01111000000 0000000000
Q ss_pred CCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHH
Q 000500 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1460)
Q Consensus 590 e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~ 669 (1460)
. ....|..+|..++.. ....++|||++....++.|...|...|+....++|.++..+|..+++.
T Consensus 227 ~--------------~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~ 290 (434)
T PRK11192 227 D--------------DLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKR 290 (434)
T ss_pred C--------------CHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHH
Confidence 0 012345555555542 246799999999999999999999999999999999999999999999
Q ss_pred HhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEE
Q 000500 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1460)
Q Consensus 670 Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~V 729 (1460)
|+.+ .+.+|++|.++++|||++.+++||+||+++++..++|++||++|.|....+.+
T Consensus 291 f~~G---~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 291 LTDG---RVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred HhCC---CCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 9764 44589999999999999999999999999999999999999999998765554
No 37
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.89 E-value=2.2e-21 Score=237.55 Aligned_cols=313 Identities=17% Similarity=0.223 Sum_probs=209.8
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHH-HHHHhCC--------CCcEEEEEcc-ccHHHHHHHHHH
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER--------ISPHLVVAPL-STLRNWEREFAT 354 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l-~~L~~~~--------~~p~LIVvP~-sll~qW~~E~~k 354 (1460)
.+.|.|.+++.-+ ..+.++|+..++|+|||+..+..+ ..+.... ....|||||. .+..||.+++..
T Consensus 30 ~pt~iQ~~aip~i----l~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLT----LAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHH----hCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 5789999998766 578899999999999999875443 3343211 1258999995 777899888877
Q ss_pred HCC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcce
Q 000500 355 WAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQ 430 (1460)
Q Consensus 355 w~P--~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~--~~L~~i~w~ 430 (1460)
+.. ++++..++|........... ...++|+|+|++.+.... ..+.--.+.
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~~~l--------------------------~~~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQLKVL--------------------------ESGVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred HhccCCceEEEEECCCCHHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCccccccc
Confidence 753 57777788765433222111 124689999999886532 223334578
Q ss_pred EEEeccccccCCcc--hHHHHHHHhccc---cceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHH
Q 000500 431 CMIVDEGHRLKNKD--SKLFSSLKQYST---RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (1460)
Q Consensus 431 ~VIvDEAHrlKN~~--Sk~~~al~~l~~---~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i 505 (1460)
+|||||||++-... ..+...+..+.. ...+++|||.-. .+.++.
T Consensus 160 ~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~-~~~~~~------------------------------ 208 (423)
T PRK04837 160 VVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSY-RVRELA------------------------------ 208 (423)
T ss_pred EEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCH-HHHHHH------------------------------
Confidence 99999999986533 223333344432 235788999621 111100
Q ss_pred HHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccc
Q 000500 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1460)
Q Consensus 506 ~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L 585 (1460)
...+. -| .. +.+.-... ... . + .+.++
T Consensus 209 ---~~~~~--------------~p--~~--i~v~~~~~-------------------~~~--~-------i----~~~~~ 235 (423)
T PRK04837 209 ---FEHMN--------------NP--EY--VEVEPEQK-------------------TGH--R-------I----KEELF 235 (423)
T ss_pred ---HHHCC--------------CC--EE--EEEcCCCc-------------------CCC--c-------e----eEEEE
Confidence 00000 00 00 00000000 000 0 0 00000
Q ss_pred ccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Q 000500 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1460)
Q Consensus 586 ~~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~ 665 (1460)
. .....|+.+|..++.. ....++|||++.....+.|...|...|+++..++|.++..+|..
T Consensus 236 ~-----------------~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~ 296 (423)
T PRK04837 236 Y-----------------PSNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLR 296 (423)
T ss_pred e-----------------CCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHH
Confidence 0 0112355566666654 24679999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecC
Q 000500 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1460)
Q Consensus 666 ~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~ 735 (1460)
+++.|+++. ..+|++|.++++|||++.+++||+||+++++..|+|++||++|.|+.-.+ +-|++.
T Consensus 297 ~l~~F~~g~---~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~a--i~~~~~ 361 (423)
T PRK04837 297 ILEEFTRGD---LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHS--ISLACE 361 (423)
T ss_pred HHHHHHcCC---CcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeE--EEEeCH
Confidence 999998744 44899999999999999999999999999999999999999999976544 445544
No 38
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.88 E-value=8.9e-21 Score=239.00 Aligned_cols=309 Identities=16% Similarity=0.230 Sum_probs=208.0
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHH-HHHHhCC--------CCcEEEEEcc-ccHHHHHHHHH
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER--------ISPHLVVAPL-STLRNWEREFA 353 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l-~~L~~~~--------~~p~LIVvP~-sll~qW~~E~~ 353 (1460)
..+.|.|..++..+ ..++++|+..++|+|||+.++..+ ..+.... ...+|||||. .|..|+...+.
T Consensus 30 ~~ptpiQ~~~ip~~----l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~ 105 (572)
T PRK04537 30 TRCTPIQALTLPVA----LPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAV 105 (572)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 35889999999876 578999999999999999875544 4443211 1378999995 77789999999
Q ss_pred HHCCC--CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc---ccCCCc
Q 000500 354 TWAPQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIK 428 (1460)
Q Consensus 354 kw~P~--l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~---~L~~i~ 428 (1460)
+|... +++..++|........... ...++|+|+|.+.+..... .+....
T Consensus 106 ~l~~~~~i~v~~l~Gg~~~~~q~~~l--------------------------~~~~dIiV~TP~rL~~~l~~~~~~~l~~ 159 (572)
T PRK04537 106 KFGADLGLRFALVYGGVDYDKQRELL--------------------------QQGVDVIIATPGRLIDYVKQHKVVSLHA 159 (572)
T ss_pred HHhccCCceEEEEECCCCHHHHHHHH--------------------------hCCCCEEEECHHHHHHHHHhccccchhh
Confidence 88743 5677777765433221110 1247899999998865432 233335
Q ss_pred ceEEEeccccccCCcc--hHHHHHHHhcc---ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHH
Q 000500 429 WQCMIVDEGHRLKNKD--SKLFSSLKQYS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEE 503 (1460)
Q Consensus 429 w~~VIvDEAHrlKN~~--Sk~~~al~~l~---~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~ 503 (1460)
..+|||||||++-... ..+...+..+. ....+++|||.- +.+.++ ..
T Consensus 160 v~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~-~~v~~l---~~------------------------ 211 (572)
T PRK04537 160 CEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLS-HRVLEL---AY------------------------ 211 (572)
T ss_pred eeeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCcc-HHHHHH---HH------------------------
Confidence 6789999999985432 22333334443 335688999952 111110 00
Q ss_pred HHHHHHHhh-chhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCC
Q 000500 504 QISRLHRML-APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCH 582 (1460)
Q Consensus 504 ~i~~L~~~L-~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~h 582 (1460)
..+ .|..+...... ..+......+.
T Consensus 212 ------~~l~~p~~i~v~~~~---~~~~~i~q~~~--------------------------------------------- 237 (572)
T PRK04537 212 ------EHMNEPEKLVVETET---ITAARVRQRIY--------------------------------------------- 237 (572)
T ss_pred ------HHhcCCcEEEecccc---ccccceeEEEE---------------------------------------------
Confidence 000 00000000000 00000000000
Q ss_pred cccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHH
Q 000500 583 PYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAE 662 (1460)
Q Consensus 583 P~L~~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~e 662 (1460)
+. ....|+..|..++.. ..+.++|||++.....+.|.++|...|+.+..++|+++..+
T Consensus 238 ---~~-----------------~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~e 295 (572)
T PRK04537 238 ---FP-----------------ADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKK 295 (572)
T ss_pred ---ec-----------------CHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHH
Confidence 00 012244444455443 34789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEE
Q 000500 663 RQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1460)
Q Consensus 663 Rq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~V 729 (1460)
|..+++.|.+. ...+||+|.++++|||++.+++||+||.++++..|+|++||++|.|..-.+..
T Consensus 296 R~~il~~Fr~G---~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~ 359 (572)
T PRK04537 296 RESLLNRFQKG---QLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAIS 359 (572)
T ss_pred HHHHHHHHHcC---CCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEE
Confidence 99999999764 44589999999999999999999999999999999999999999998755443
No 39
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.88 E-value=2e-20 Score=237.34 Aligned_cols=310 Identities=17% Similarity=0.227 Sum_probs=210.6
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHH-HHHHHHHhCCC-CcEEEEEcc-ccHHHHHHHHHHHC---C
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERI-SPHLVVAPL-STLRNWEREFATWA---P 357 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~L~~~~~-~p~LIVvP~-sll~qW~~E~~kw~---P 357 (1460)
.++.|+|.+++..+ ..+..+|+...+|+|||++.+ .++..+..... ..+|||||. .+..||..++..+. +
T Consensus 27 ~~ptpiQ~~ai~~l----l~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 27 EKPSPIQAECIPHL----LNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 36899999998876 467889999999999999864 44444433322 268999996 77799999987764 6
Q ss_pred CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcceEEEec
Q 000500 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVD 435 (1460)
Q Consensus 358 ~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~--~~L~~i~w~~VIvD 435 (1460)
+++++.++|.......++.. ....+|||+|++.+.... ..+.--...+||||
T Consensus 103 ~i~v~~~~gG~~~~~q~~~l--------------------------~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlD 156 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLRAL--------------------------RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLD 156 (629)
T ss_pred CceEEEEECCcCHHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCcchhhceEEEec
Confidence 78888888876543322221 124689999998886432 22222356789999
Q ss_pred cccccCCcc--hHHHHHHHhcccc-ceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhh
Q 000500 436 EGHRLKNKD--SKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 512 (1460)
Q Consensus 436 EAHrlKN~~--Sk~~~al~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L 512 (1460)
|||.+-+.. ..+...+..+... ..+++|||.- ..+.++.
T Consensus 157 EAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p-~~i~~i~------------------------------------- 198 (629)
T PRK11634 157 EADEMLRMGFIEDVETIMAQIPEGHQTALFSATMP-EAIRRIT------------------------------------- 198 (629)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCC-hhHHHHH-------------------------------------
Confidence 999886543 3344555556443 4688999951 1111100
Q ss_pred chhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCC
Q 000500 513 APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (1460)
Q Consensus 513 ~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~ 592 (1460)
..|+ ..... +.+.-. ..... ...+-|..
T Consensus 199 ~~~l------------~~~~~--i~i~~~---------------------~~~~~-----------~i~q~~~~------ 226 (629)
T PRK11634 199 RRFM------------KEPQE--VRIQSS---------------------VTTRP-----------DISQSYWT------ 226 (629)
T ss_pred HHHc------------CCCeE--EEccCc---------------------cccCC-----------ceEEEEEE------
Confidence 0000 00000 000000 00000 00000000
Q ss_pred cccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhc
Q 000500 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (1460)
Q Consensus 593 ~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~ 672 (1460)
+....|...|..+|.. ....++||||......+.|...|...|+....++|.++..+|..++++|..
T Consensus 227 -----------v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~ 293 (629)
T PRK11634 227 -----------VWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 (629)
T ss_pred -----------echhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC
Confidence 0112244555555543 234689999999999999999999999999999999999999999999976
Q ss_pred cCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEE
Q 000500 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1460)
Q Consensus 673 ~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~V 729 (1460)
. .+.+||+|.+++.|||++.+++||+||.+.++..|+|++||++|.|..-.+.+
T Consensus 294 G---~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~ 347 (629)
T PRK11634 294 G---RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALL 347 (629)
T ss_pred C---CCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEE
Confidence 4 44589999999999999999999999999999999999999999997654443
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.87 E-value=2.2e-20 Score=237.66 Aligned_cols=305 Identities=18% Similarity=0.170 Sum_probs=205.2
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEE
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P~l~vv 362 (1460)
..++|+|.+++.-+ ..+.++++..+||.|||+..+..+. .. .+.+|||+|. +++.+|...+... +..+.
T Consensus 24 ~~~r~~Q~~ai~~i----l~g~dvlv~apTGsGKTl~y~lpal--~~--~g~tlVisPl~sL~~dqv~~l~~~--gi~~~ 93 (607)
T PRK11057 24 QQFRPGQQEIIDAV----LSGRDCLVVMPTGGGKSLCYQIPAL--VL--DGLTLVVSPLISLMKDQVDQLLAN--GVAAA 93 (607)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCchHHHHHHHHHH--Hc--CCCEEEEecHHHHHHHHHHHHHHc--CCcEE
Confidence 36999999999866 4788999999999999987643322 22 2479999995 7778888888765 45555
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hcccCCCcceEEEecccccc
Q 000500 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRL 440 (1460)
Q Consensus 363 vy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d--~~~L~~i~w~~VIvDEAHrl 440 (1460)
.+.+..........+.- ......+++++|++.+... ...+...++.+|||||||.+
T Consensus 94 ~~~s~~~~~~~~~~~~~----------------------~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i 151 (607)
T PRK11057 94 CLNSTQTREQQLEVMAG----------------------CRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCI 151 (607)
T ss_pred EEcCCCCHHHHHHHHHH----------------------HhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccc
Confidence 55554432221111100 0123567899999987642 23344557889999999998
Q ss_pred CCcch---HHHHHH----HhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhc
Q 000500 441 KNKDS---KLFSSL----KQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1460)
Q Consensus 441 KN~~S---k~~~al----~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~ 513 (1460)
..... ..+..+ ..+.....++||||+-.....++...+.+-.|..+...
T Consensus 152 ~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~------------------------ 207 (607)
T PRK11057 152 SQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS------------------------ 207 (607)
T ss_pred ccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECC------------------------
Confidence 65332 122222 23345567999999854443444333332221110000
Q ss_pred hhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000500 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1460)
Q Consensus 514 p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~ 593 (1460)
. .-|.....++ .
T Consensus 208 ----------~--~r~nl~~~v~--------------------------------------------------~------ 219 (607)
T PRK11057 208 ----------F--DRPNIRYTLV--------------------------------------------------E------ 219 (607)
T ss_pred ----------C--CCCcceeeee--------------------------------------------------e------
Confidence 0 0000000000 0
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcc
Q 000500 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1460)
Q Consensus 594 ~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~ 673 (1460)
...++..|..++.. ..+.++||||+.....+.+...|...|+++..++|+++..+|..+++.|..+
T Consensus 220 ------------~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g 285 (607)
T PRK11057 220 ------------KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRD 285 (607)
T ss_pred ------------ccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCC
Confidence 00011112222221 3578999999999999999999999999999999999999999999999764
Q ss_pred CCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEE
Q 000500 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1460)
Q Consensus 674 ~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~V 729 (1460)
. ..+|++|.+.|.|||++.+++||+||.+.+...+.|++||++|.|....+.+
T Consensus 286 ~---~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~il 338 (607)
T PRK11057 286 D---LQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (607)
T ss_pred C---CCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEE
Confidence 3 4489999999999999999999999999999999999999999997655443
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.87 E-value=2.2e-20 Score=237.78 Aligned_cols=304 Identities=20% Similarity=0.220 Sum_probs=209.6
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEE
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P~l~vv 362 (1460)
.+++|+|.++++-+ ..+.+++++..+|.|||+.+...+ +.. .+.+|||+|. +++.++...+... +..+.
T Consensus 12 ~~fr~~Q~~~i~~i----l~g~dvlv~~PTG~GKTl~y~lpa--l~~--~g~~lVisPl~sL~~dq~~~l~~~--gi~~~ 81 (591)
T TIGR01389 12 DDFRPGQEEIISHV----LDGRDVLVVMPTGGGKSLCYQVPA--LLL--KGLTVVISPLISLMKDQVDQLRAA--GVAAA 81 (591)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCccHhHHHHHHH--HHc--CCcEEEEcCCHHHHHHHHHHHHHc--CCcEE
Confidence 46999999999876 467899999999999999865333 222 3478999995 7888898888875 46676
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hcccCCCcceEEEecccccc
Q 000500 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRL 440 (1460)
Q Consensus 363 vy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d--~~~L~~i~w~~VIvDEAHrl 440 (1460)
.++++...........- ......+++++|++.+... ...+......+|||||||.+
T Consensus 82 ~~~s~~~~~~~~~~~~~----------------------l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i 139 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEKA----------------------LVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCV 139 (591)
T ss_pred EEeCCCCHHHHHHHHHH----------------------HhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCccc
Confidence 67766443321111000 0123578999999988542 33455567899999999998
Q ss_pred CCcch-------HHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhc
Q 000500 441 KNKDS-------KLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1460)
Q Consensus 441 KN~~S-------k~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~ 513 (1460)
..... .+......+.....++||||+-.....++...+.+-.+..+... |
T Consensus 140 ~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~------~----------------- 196 (591)
T TIGR01389 140 SQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFITS------F----------------- 196 (591)
T ss_pred ccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC------C-----------------
Confidence 64332 22233334445568999999854444444333322111111000 0
Q ss_pred hhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000500 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1460)
Q Consensus 514 p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~ 593 (1460)
.-|.....++.
T Consensus 197 -------------~r~nl~~~v~~-------------------------------------------------------- 207 (591)
T TIGR01389 197 -------------DRPNLRFSVVK-------------------------------------------------------- 207 (591)
T ss_pred -------------CCCCcEEEEEe--------------------------------------------------------
Confidence 00000000000
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcc
Q 000500 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1460)
Q Consensus 594 ~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~ 673 (1460)
...+...+..+|... .+.++||||......+.|..+|...|+++..++|+++.++|..+++.|..+
T Consensus 208 ------------~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g 273 (591)
T TIGR01389 208 ------------KNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYD 273 (591)
T ss_pred ------------CCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 001122233333321 267899999999999999999999999999999999999999999999764
Q ss_pred CCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceE
Q 000500 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1460)
Q Consensus 674 ~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~ 728 (1460)
. +.+|++|.+.|.|||++.+++||+|+++.|+..+.|++||++|.|+...+.
T Consensus 274 ~---~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 274 D---VKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred C---CcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 3 458999999999999999999999999999999999999999999766554
No 42
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=3.5e-21 Score=221.78 Aligned_cols=341 Identities=17% Similarity=0.318 Sum_probs=235.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccc-cHHHHHHHHHHHCC--C
Q 000500 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWAP--Q 358 (1460)
Q Consensus 282 ~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~s-ll~qW~~E~~kw~P--~ 358 (1460)
+..++||||...++-|. .-...+.||+.-.+|.|||+..+..+..+. +..||+|..+ -+.||...|..|.. +
T Consensus 299 Pst~iRpYQEksL~KMF-GNgRARSGiIVLPCGAGKtLVGvTAa~tik----K~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 299 PSTQIRPYQEKSLSKMF-GNGRARSGIIVLPCGAGKTLVGVTAACTIK----KSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred cccccCchHHHHHHHHh-CCCcccCceEEEecCCCCceeeeeeeeeec----ccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 34679999999998772 223345799999999999998776665432 3789999965 48999999999983 2
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh----------hhcccCCCc
Q 000500 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----------DSASLKPIK 428 (1460)
Q Consensus 359 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~----------d~~~L~~i~ 428 (1460)
-.+..|..+..++ ......|+||||.|+.. ...++....
T Consensus 374 ~~i~rFTsd~Ke~-------------------------------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~E 422 (776)
T KOG1123|consen 374 DQICRFTSDAKER-------------------------------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGRE 422 (776)
T ss_pred cceEEeecccccc-------------------------------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCe
Confidence 3445555444332 12355699999999843 255678889
Q ss_pred ceEEEeccccccCCcchHHHHHHH-hccccceEeeccccccCCHHHHHHHHHhh-cCCCCCChHHHHHHHhhhhhHHHHH
Q 000500 429 WQCMIVDEGHRLKNKDSKLFSSLK-QYSTRHRVLLTGTPLQNNLDELFMLMHFL-DAGKFGSLEEFQEEFKDINQEEQIS 506 (1460)
Q Consensus 429 w~~VIvDEAHrlKN~~Sk~~~al~-~l~~~~rLLLTGTPlqNnl~EL~sLL~fL-~p~~f~~~~~F~~~f~~~~~~~~i~ 506 (1460)
|.++|+||+|-+- ++.++.+. .+.+..+|+||||-+... |-..=|||| .|..+. . +..
T Consensus 423 WGllllDEVHvvP---A~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYE------A---------nWm 482 (776)
T KOG1123|consen 423 WGLLLLDEVHVVP---AKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYE------A---------NWM 482 (776)
T ss_pred eeeEEeehhccch---HHHHHHHHHHHHHHhhccceeEEeecc--ccccccceeecchhhh------c---------cHH
Confidence 9999999999774 45555444 456777899999986543 111223443 233221 0 111
Q ss_pred HHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccc
Q 000500 507 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1460)
Q Consensus 507 ~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~ 586 (1460)
.|.+ ...+.......|+|+||+. .|+..+..+.. ...+
T Consensus 483 dL~~--------------kGhIA~VqCaEVWCpMt~e---Fy~eYL~~~t~--------kr~l----------------- 520 (776)
T KOG1123|consen 483 DLQK--------------KGHIAKVQCAEVWCPMTPE---FYREYLRENTR--------KRML----------------- 520 (776)
T ss_pred HHHh--------------CCceeEEeeeeeecCCCHH---HHHHHHhhhhh--------hhhe-----------------
Confidence 1110 0123444567899999985 55555443210 0000
Q ss_pred cCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Q 000500 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1460)
Q Consensus 587 ~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~ 666 (1460)
..+-+..|++...-||+....+|.|+||||..+-.|.. |.-..|-+| |.|.|+..+|-++
T Consensus 521 ---------------LyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~---YAikl~Kpf--IYG~Tsq~ERm~I 580 (776)
T KOG1123|consen 521 ---------------LYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKE---YAIKLGKPF--IYGPTSQNERMKI 580 (776)
T ss_pred ---------------eeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHH---HHHHcCCce--EECCCchhHHHHH
Confidence 01224568888888888888899999999988765544 443344444 7899999999999
Q ss_pred HHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCC-ChhhHHHHHHhhcccCCC----CceEEEEEecCCCHHHH
Q 000500 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQT----NKVMIFRLITRGSIEER 741 (1460)
Q Consensus 667 Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdW-NP~~d~QAigRahRiGQ~----k~V~VyrLvt~~TiEE~ 741 (1460)
++.|+..+.-..+|| +++|...|+|+.|+++|-..+.. +-.+..||+||+.|--.. -++..|-||+++|.|..
T Consensus 581 LqnFq~n~~vNTIFl--SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 581 LQNFQTNPKVNTIFL--SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred HHhcccCCccceEEE--eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 999987655545455 89999999999999999998875 456789999999996422 26889999999998854
Q ss_pred H
Q 000500 742 M 742 (1460)
Q Consensus 742 I 742 (1460)
-
T Consensus 659 Y 659 (776)
T KOG1123|consen 659 Y 659 (776)
T ss_pred h
Confidence 3
No 43
>PTZ00424 helicase 45; Provisional
Probab=99.87 E-value=3.8e-20 Score=224.98 Aligned_cols=317 Identities=18% Similarity=0.259 Sum_probs=206.6
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhC--CCCcEEEEEcc-ccHHHHHHHHHHHCC--C
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWAP--Q 358 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~--~~~p~LIVvP~-sll~qW~~E~~kw~P--~ 358 (1460)
..+.|+|..++..+ ..+.+.|+..++|+|||+.++..+...... ....+|||+|. .+..|+...+..... .
T Consensus 49 ~~~~~~Q~~ai~~i----~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 124 (401)
T PTZ00424 49 EKPSAIQQRGIKPI----LDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLK 124 (401)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcC
Confidence 36899999998876 578889999999999999875444444332 22379999995 666788777777653 3
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcceEEEecc
Q 000500 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 436 (1460)
Q Consensus 359 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~--~~L~~i~w~~VIvDE 436 (1460)
..+....|....+..+... ....+|+|+|++.+.... ..+.--.+++|||||
T Consensus 125 ~~~~~~~g~~~~~~~~~~~--------------------------~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDE 178 (401)
T PTZ00424 125 VRCHACVGGTVVRDDINKL--------------------------KAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDE 178 (401)
T ss_pred ceEEEEECCcCHHHHHHHH--------------------------cCCCCEEEECcHHHHHHHHhCCcccccccEEEEec
Confidence 4455556655433322111 123579999998875421 122233568999999
Q ss_pred ccccCCcc--hHHHHHHHhccc-cceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhc
Q 000500 437 GHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1460)
Q Consensus 437 AHrlKN~~--Sk~~~al~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~ 513 (1460)
||++.... ..+...+..+.. ...+++|||+-. ...++. ..|. ..
T Consensus 179 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~~------------------~~~~--------------~~ 225 (401)
T PTZ00424 179 ADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPN-EILELT------------------TKFM--------------RD 225 (401)
T ss_pred HHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCH-HHHHHH------------------HHHc--------------CC
Confidence 99986432 345555555543 357899999621 111100 0000 00
Q ss_pred hhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000500 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1460)
Q Consensus 514 p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~ 593 (1460)
|..+ ..+.+. ..+.......+.+. .
T Consensus 226 ~~~~-~~~~~~-~~~~~~~~~~~~~~--~--------------------------------------------------- 250 (401)
T PTZ00424 226 PKRI-LVKKDE-LTLEGIRQFYVAVE--K--------------------------------------------------- 250 (401)
T ss_pred CEEE-EeCCCC-cccCCceEEEEecC--h---------------------------------------------------
Confidence 0000 000000 00000000000000 0
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcc
Q 000500 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1460)
Q Consensus 594 ~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~ 673 (1460)
...++..+..++..+ ...++||||......+.+...|...++.+..++|.++..+|+.+++.|+++
T Consensus 251 ------------~~~~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g 316 (401)
T PTZ00424 251 ------------EEWKFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSG 316 (401)
T ss_pred ------------HHHHHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 001222222232221 346899999999999999999999999999999999999999999999864
Q ss_pred CCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCC
Q 000500 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (1460)
Q Consensus 674 ~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~T 737 (1460)
...+|++|.++++|||++.+++||+||++.++..+.|++||++|.|.. -.++.|++.+.
T Consensus 317 ---~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~~ 375 (401)
T PTZ00424 317 ---STRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK--GVAINFVTPDD 375 (401)
T ss_pred ---CCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCC--ceEEEEEcHHH
Confidence 345899999999999999999999999999999999999999999864 44566776543
No 44
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=1e-19 Score=219.04 Aligned_cols=313 Identities=19% Similarity=0.278 Sum_probs=221.7
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHH-HHHHHHHHh------CCCCc-EEEEEcc-ccHHHHHHHHHHH
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFG------ERISP-HLVVAPL-STLRNWEREFATW 355 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~L~~------~~~~p-~LIVvP~-sll~qW~~E~~kw 355 (1460)
.+.|-|..+.-.+ ..|+.+|....+|+|||+.. |-.+.++.. .+.+| +||++|. .+..|-..++..+
T Consensus 113 ~PtpIQaq~wp~~----l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIA----LSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhccccee----ccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 4666776664434 57899999999999999874 455556554 12345 8999996 6667888999988
Q ss_pred CCCCe--EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcceE
Q 000500 356 APQMN--VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQC 431 (1460)
Q Consensus 356 ~P~l~--vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~--~~L~~i~w~~ 431 (1460)
...+. .++++|.......++.. ....+|+|+|...+.... ..+.--...+
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~~l--------------------------~~gvdiviaTPGRl~d~le~g~~~l~~v~y 242 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLRDL--------------------------ERGVDVVIATPGRLIDLLEEGSLNLSRVTY 242 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHHHH--------------------------hcCCcEEEeCChHHHHHHHcCCccccceeE
Confidence 86554 77777776665555543 235789999999987543 3344446779
Q ss_pred EEeccccccCC--cchHHHHHHHhc-ccc-ceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHH
Q 000500 432 MIVDEGHRLKN--KDSKLFSSLKQY-STR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1460)
Q Consensus 432 VIvDEAHrlKN--~~Sk~~~al~~l-~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~ 507 (1460)
+|+|||.++-. ...+..+.+..+ ... ..|+-|||= + ..
T Consensus 243 lVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTw--------------------p---------------~~--- 284 (519)
T KOG0331|consen 243 LVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATW--------------------P---------------KE--- 284 (519)
T ss_pred EEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeec--------------------c---------------HH---
Confidence 99999999854 456777788887 333 356777772 0 00
Q ss_pred HHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccccc
Q 000500 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (1460)
Q Consensus 508 L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~ 587 (1460)
+|.+..+++. - +....+.... . + .....+.++-..
T Consensus 285 ---------v~~lA~~fl~-~-~~~i~ig~~~---~---------------~--------~a~~~i~qive~-------- 319 (519)
T KOG0331|consen 285 ---------VRQLAEDFLN-N-PIQINVGNKK---E---------------L--------KANHNIRQIVEV-------- 319 (519)
T ss_pred ---------HHHHHHHHhc-C-ceEEEecchh---h---------------h--------hhhcchhhhhhh--------
Confidence 0111111111 1 1111111110 0 0 000001111111
Q ss_pred CCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHH-HcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Q 000500 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK-EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1460)
Q Consensus 588 ~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~-~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~ 666 (1460)
+...+|...|.++|.... ..+.||||||+..+..+.|+..|...+|+..-|+|..+..+|..+
T Consensus 320 ----------------~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~ 383 (519)
T KOG0331|consen 320 ----------------CDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWV 383 (519)
T ss_pred ----------------cCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHH
Confidence 224568888888888877 445699999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEE
Q 000500 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1460)
Q Consensus 667 Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~V 729 (1460)
++.|..+ ++-+|++|..++.||+++..++||.||+|-|...|++|+||.+|-|++-....
T Consensus 384 L~~FreG---~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~t 443 (519)
T KOG0331|consen 384 LKGFREG---KSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAIT 443 (519)
T ss_pred HHhcccC---CcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEE
Confidence 9999764 44599999999999999999999999999999999999999999887755443
No 45
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.85 E-value=1.2e-19 Score=233.06 Aligned_cols=311 Identities=16% Similarity=0.152 Sum_probs=205.1
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEE
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P~l~vv 362 (1460)
..+||+|.+++..+ ..++++|+...+|.|||+....-+.. . .+.+|||+|+ +|+.++...+... ++.+.
T Consensus 459 ~sFRp~Q~eaI~ai----L~GrDVLVimPTGSGKSLcYQLPAL~--~--~GiTLVISPLiSLmqDQV~~L~~~--GI~Aa 528 (1195)
T PLN03137 459 HSFRPNQREIINAT----MSGYDVFVLMPTGGGKSLTYQLPALI--C--PGITLVISPLVSLIQDQIMNLLQA--NIPAA 528 (1195)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCccHHHHHHHHHHH--c--CCcEEEEeCHHHHHHHHHHHHHhC--CCeEE
Confidence 57999999999876 57889999999999999876433322 2 3579999996 6766566655542 56666
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh---hcccCC----CcceEEEec
Q 000500 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SASLKP----IKWQCMIVD 435 (1460)
Q Consensus 363 vy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d---~~~L~~----i~w~~VIvD 435 (1460)
.+.|..........+.-. ......++++++|.+.+... ...+.. -...+||||
T Consensus 529 ~L~s~~s~~eq~~ilr~l--------------------~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVID 588 (1195)
T PLN03137 529 SLSAGMEWAEQLEILQEL--------------------SSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVID 588 (1195)
T ss_pred EEECCCCHHHHHHHHHHH--------------------HhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccC
Confidence 666654432221111000 00124678999999987532 112211 236789999
Q ss_pred cccccCCcch---HHHHH----HHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000500 436 EGHRLKNKDS---KLFSS----LKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1460)
Q Consensus 436 EAHrlKN~~S---k~~~a----l~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L 508 (1460)
|||.+-.... .-++. ...+.....++||||.-.....++...|.+..+..|.. .|
T Consensus 589 EAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~------Sf------------ 650 (1195)
T PLN03137 589 EAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ------SF------------ 650 (1195)
T ss_pred cchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec------cc------------
Confidence 9999865432 12222 22344556799999985554444444333222111100 00
Q ss_pred HHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000500 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1460)
Q Consensus 509 ~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~ 588 (1460)
.-|.....++. .. .
T Consensus 651 ------------------~RpNL~y~Vv~---k~--k------------------------------------------- 664 (1195)
T PLN03137 651 ------------------NRPNLWYSVVP---KT--K------------------------------------------- 664 (1195)
T ss_pred ------------------CccceEEEEec---cc--h-------------------------------------------
Confidence 00100000100 00 0
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHH
Q 000500 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1460)
Q Consensus 589 ~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id 668 (1460)
..+..|.+++... ..+...||||......+.|..+|...|++...++|+++..+|..+++
T Consensus 665 -------------------k~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe 724 (1195)
T PLN03137 665 -------------------KCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQK 724 (1195)
T ss_pred -------------------hHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHH
Confidence 0001111222111 12457899999999999999999999999999999999999999999
Q ss_pred HHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEE
Q 000500 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (1460)
Q Consensus 669 ~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~Vyr 731 (1460)
+|..+. +.+|++|.|.|.|||++.+++||+|+.+-+...|.|++||++|.|+...+..|+
T Consensus 725 ~F~~Ge---i~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 725 QWSKDE---INIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred HHhcCC---CcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 998744 458999999999999999999999999999999999999999999987666554
No 46
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.84 E-value=1.9e-19 Score=238.45 Aligned_cols=357 Identities=17% Similarity=0.216 Sum_probs=207.0
Q ss_pred CCCCCHHHHHHHHHHHHhhhc-CCcEEEEecCCCCcHHHHHHHHHHHHhC-CCCcEEEEEc-cccHHHHHHHHHHHCCCC
Q 000500 283 GGSLHPYQLEGLNFLRFSWSK-QTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP-LSTLRNWEREFATWAPQM 359 (1460)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~-~~~~ILADemGLGKTiqaIa~l~~L~~~-~~~p~LIVvP-~sll~qW~~E~~kw~P~l 359 (1460)
+..||+||.++++.+...+.. .++++|.+.+|+|||+++++++..+... +.+++||||| ..|+.||..+|..+.+..
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 357999999999877666554 4678999999999999999998888765 3459999999 588899999999864321
Q ss_pred e--EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc-------ccCCCcce
Q 000500 360 N--VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-------SLKPIKWQ 430 (1460)
Q Consensus 360 ~--vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~-------~L~~i~w~ 430 (1460)
. +....+... +... .......|+|+|+.++.+... .+..-.|+
T Consensus 491 ~~~~~~i~~i~~----L~~~------------------------~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fd 542 (1123)
T PRK11448 491 DQTFASIYDIKG----LEDK------------------------FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYD 542 (1123)
T ss_pred ccchhhhhchhh----hhhh------------------------cccCCCCEEEEEHHHHHHhhhccccccccCCCCccc
Confidence 1 100011000 0000 001245799999999865421 12234688
Q ss_pred EEEeccccccCCc-----------------chHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHH
Q 000500 431 CMIVDEGHRLKNK-----------------DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQ 493 (1460)
Q Consensus 431 ~VIvDEAHrlKN~-----------------~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~ 493 (1460)
+||||||||.... .++..+.+..+. ..+|+|||||..++ .++|. .| .+
T Consensus 543 lIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t-~~~FG-----~p-v~------- 607 (1123)
T PRK11448 543 CIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFD-AVKIGLTATPALHT-TEIFG-----EP-VY------- 607 (1123)
T ss_pred EEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcC-ccEEEEecCCccch-hHHhC-----Ce-eE-------
Confidence 9999999996321 123333343333 58899999997432 11111 00 00
Q ss_pred HHHhhhhhHHHHHHHHHhhchhhhhhhhhhhhhcCCCceeEEEe----ecCC-HHHHHHHHHHHHHHHHHHHhcCCchhh
Q 000500 494 EEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILR----VELS-SKQKEYYKAILTRNYQILTRRGGAQIS 568 (1460)
Q Consensus 494 ~~f~~~~~~~~i~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~----v~Ls-~~Qk~~Y~~il~~~~~~l~~~~~~~~~ 568 (1460)
.| .-.+.+. ..+++. .-||....... +... ..+...|...... +....
T Consensus 608 -~Y---sl~eAI~------DG~Lv~--------~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~----i~~~~----- 660 (1123)
T PRK11448 608 -TY---SYREAVI------DGYLID--------HEPPIRIETRLSQEGIHFEKGEEVEVINTQTGE----IDLAT----- 660 (1123)
T ss_pred -Ee---eHHHHHh------cCCccc--------CcCCEEEEEEeccccccccccchhhhcchhhhh----hhhcc-----
Confidence 00 0000000 011110 01232222110 0011 1111122211100 00000
Q ss_pred HHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHH-HHHHHHHHHH-cCceEEEEecchhhHHHHHHHHHh
Q 000500 569 LINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQL-LDKMMVKLKE-QGHRVLIYSQFQHMLDLLEDYLTF 646 (1460)
Q Consensus 569 l~nil~~LRk~c~hP~L~~~~e~~~~~~~~~~~~lv~~SgKl~~-L~klL~~l~~-~g~KVLIFSq~~~~LdiLed~L~~ 646 (1460)
...........+...+-....... +..++..+.. .+.|+||||......+.+.+.|..
T Consensus 661 --------------------l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~ 720 (1123)
T PRK11448 661 --------------------LEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKE 720 (1123)
T ss_pred --------------------CcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHH
Confidence 000000000001111111111112 2233333322 236999999999988888777654
Q ss_pred c------CC---eEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHh
Q 000500 647 K------KW---QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMAR 717 (1460)
Q Consensus 647 ~------g~---~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigR 717 (1460)
. ++ .+..|+|+++ +++.+|++|.++... .+|+++...++|+|++.+++||++.+.-++..+.|++||
T Consensus 721 ~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p--~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGR 796 (1123)
T PRK11448 721 AFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLP--NIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGR 796 (1123)
T ss_pred HHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCC--eEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhh
Confidence 2 22 3567999985 578899999764332 589999999999999999999999999999999999999
Q ss_pred hcccCC---CCceEEEEEe
Q 000500 718 AHRLGQ---TNKVMIFRLI 733 (1460)
Q Consensus 718 ahRiGQ---~k~V~VyrLv 733 (1460)
+.|..- +....||.++
T Consensus 797 gtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 797 ATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred hccCCccCCCceEEEEehH
Confidence 999865 5677888876
No 47
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=1.8e-19 Score=204.03 Aligned_cols=323 Identities=21% Similarity=0.287 Sum_probs=229.6
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHH-HHHHHHHHHhCCCC-cEEEEEccccH-HHHHHHHHHHC--CCC
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERIS-PHLVVAPLSTL-RNWEREFATWA--PQM 359 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiq-aIa~l~~L~~~~~~-p~LIVvP~sll-~qW~~E~~kw~--P~l 359 (1460)
.+.+.|.+++-.+ ..|+.+|.+.|+|+|||.. +|-++..|+.+... ..||++|.--| .|-...|+... -++
T Consensus 83 ~PT~IQ~~aiP~~----L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~igl 158 (476)
T KOG0330|consen 83 KPTKIQSEAIPVA----LGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGL 158 (476)
T ss_pred CCchhhhhhcchh----hCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCe
Confidence 4667888887655 6789999999999999987 57778888876544 56999997555 55556677765 357
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcc---cCCCcceEEEecc
Q 000500 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS---LKPIKWQCMIVDE 436 (1460)
Q Consensus 360 ~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~---L~~i~w~~VIvDE 436 (1460)
++.++.|..+........ ..++||+|.|...+...... |.--...++|+||
T Consensus 159 r~~~lvGG~~m~~q~~~L--------------------------~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQANQL--------------------------SKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EEEEEecCchHHHHHHHh--------------------------hcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 888899987766543332 24689999999999775442 2222346799999
Q ss_pred ccccCCcc--hHHHHHHHhccccce-EeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhc
Q 000500 437 GHRLKNKD--SKLFSSLKQYSTRHR-VLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1460)
Q Consensus 437 AHrlKN~~--Sk~~~al~~l~~~~r-LLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~ 513 (1460)
|.||-|.. -.+-..|+.++...+ +|.|||-- ..+.+|..
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt-----------------------------------~kv~kL~r--- 254 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMT-----------------------------------KKVRKLQR--- 254 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecc-----------------------------------hhhHHHHh---
Confidence 99998865 466777777775544 67788831 11222210
Q ss_pred hhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000500 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1460)
Q Consensus 514 p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~ 593 (1460)
. .+-. ++.|.-+. .| ..+..|.+ -||+-.
T Consensus 255 -a-----------sl~~----p~~v~~s~----ky----------------------~tv~~lkQ----~ylfv~----- 283 (476)
T KOG0330|consen 255 -A-----------SLDN----PVKVAVSS----KY----------------------QTVDHLKQ----TYLFVP----- 283 (476)
T ss_pred -h-----------ccCC----CeEEeccc----hh----------------------cchHHhhh----heEecc-----
Confidence 0 0100 00111000 01 11111221 122211
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcc
Q 000500 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1460)
Q Consensus 594 ~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~ 673 (1460)
..-|-..|..+|.++ .|..+||||......+.+.-+|+..|+....++|.++...|-.+++.|++.
T Consensus 284 ------------~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~ 349 (476)
T KOG0330|consen 284 ------------GKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG 349 (476)
T ss_pred ------------ccccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc
Confidence 112444566667654 468999999999999999999999999999999999999999999999875
Q ss_pred CCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCCHHHHHHHHHH
Q 000500 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747 (1460)
Q Consensus 674 ~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~a~ 747 (1460)
.-+ +|++|..++.|++.+.+|+||.||-|-+...|++|.||+.|.| +.-.+..||+. +|-..+++.+
T Consensus 350 ~r~---iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtq--yDve~~qrIE 416 (476)
T KOG0330|consen 350 ARS---ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQ--YDVELVQRIE 416 (476)
T ss_pred CCc---EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEeh--hhhHHHHHHH
Confidence 444 8999999999999999999999999999999999999999999 56667789988 5555555443
No 48
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.84 E-value=8.7e-19 Score=230.57 Aligned_cols=322 Identities=19% Similarity=0.221 Sum_probs=202.1
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHH-HHHHHHHhCC------CC-cEEEEEcc-ccHHHHHHHH--
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGER------IS-PHLVVAPL-STLRNWEREF-- 352 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~L~~~~------~~-p~LIVvP~-sll~qW~~E~-- 352 (1460)
..|+|+|.+++..+ ..+.++|+..+||+|||+.++ .++..+.... .+ .+|+|+|. ++..++.+.+
T Consensus 31 ~~~tpiQ~~Ai~~i----l~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLI----HEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 45999999998765 578899999999999999865 4444454321 12 58999996 6666665533
Q ss_pred -----HHHC-------CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh
Q 000500 353 -----ATWA-------PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD 420 (1460)
Q Consensus 353 -----~kw~-------P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d 420 (1460)
..++ |.+++.+.+|+.......+.. ...++|+|||++.+...
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l--------------------------~~~p~IlVtTPE~L~~l 160 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKML--------------------------KKPPHILITTPESLAIL 160 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHH--------------------------hCCCCEEEecHHHHHHH
Confidence 3343 367888888876543321110 12568999999998532
Q ss_pred h------cccCCCcceEEEeccccccCCcc--hHHHHHH---Hhcc--ccceEeeccccccCCHHHHHHHHHhhcCCCCC
Q 000500 421 S------ASLKPIKWQCMIVDEGHRLKNKD--SKLFSSL---KQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFG 487 (1460)
Q Consensus 421 ~------~~L~~i~w~~VIvDEAHrlKN~~--Sk~~~al---~~l~--~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~ 487 (1460)
. ..|. ...+|||||+|.+.+.. ..+...+ ..+. ...+++||||. .++.++.. ||......
T Consensus 161 l~~~~~~~~l~--~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va~---~L~~~~~~ 233 (876)
T PRK13767 161 LNSPKFREKLR--TVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVAK---FLVGYEDD 233 (876)
T ss_pred hcChhHHHHHh--cCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHHH---HhcCcccc
Confidence 1 1223 34679999999997532 2222222 2332 34679999996 23333322 22211000
Q ss_pred ChHHHHHHHhhhhhHHHHHHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchh
Q 000500 488 SLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQI 567 (1460)
Q Consensus 488 ~~~~F~~~f~~~~~~~~i~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~ 567 (1460)
. .-++..+ +...........+.++...
T Consensus 234 ~----------------------~~r~~~i------v~~~~~k~~~i~v~~p~~~------------------------- 260 (876)
T PRK13767 234 G----------------------EPRDCEI------VDARFVKPFDIKVISPVDD------------------------- 260 (876)
T ss_pred C----------------------CCCceEE------EccCCCccceEEEeccCcc-------------------------
Confidence 0 0000000 0000000000001000000
Q ss_pred hHHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHh-
Q 000500 568 SLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF- 646 (1460)
Q Consensus 568 ~l~nil~~LRk~c~hP~L~~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~- 646 (1460)
+..... ......+...|..+...++++||||+.....+.+...|..
T Consensus 261 -----------------l~~~~~----------------~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~ 307 (876)
T PRK13767 261 -----------------LIHTPA----------------EEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKR 307 (876)
T ss_pred -----------------cccccc----------------chhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHh
Confidence 000000 0000112234444455688999999999999999888875
Q ss_pred -----cCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhccc
Q 000500 647 -----KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1460)
Q Consensus 647 -----~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRi 721 (1460)
.+..+..++|+++.++|..+++.|.++ .+.+|++|.++++|||++.+|+||+|+++.+...++|++||++|-
T Consensus 308 ~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G---~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 308 FPEEYDEDNIGAHHSSLSREVRLEVEEKLKRG---ELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHR 384 (876)
T ss_pred chhhccccceeeeeCCCCHHHHHHHHHHHHcC---CCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCC
Confidence 246789999999999999999999764 345899999999999999999999999999999999999999976
Q ss_pred -CCCCceEEEE
Q 000500 722 -GQTNKVMIFR 731 (1460)
Q Consensus 722 -GQ~k~V~Vyr 731 (1460)
|....-.|+-
T Consensus 385 ~g~~~~g~ii~ 395 (876)
T PRK13767 385 LGEVSKGRIIV 395 (876)
T ss_pred CCCCCcEEEEE
Confidence 4555555554
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.84 E-value=8.1e-19 Score=224.22 Aligned_cols=305 Identities=15% Similarity=0.248 Sum_probs=198.5
Q ss_pred CCCCHHHHHHHHHHHHhhhcC--CcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCC--C
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--Q 358 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~--~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P--~ 358 (1460)
.+|.++|..++..+....... .+.+|..++|+|||+.++..+......+ ..+||++|. .+..||.+++.+|++ +
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g-~qvlilaPT~~LA~Q~~~~~~~l~~~~g 312 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG-YQVALMAPTEILAEQHYNSLRNLLAPLG 312 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC-CcEEEECCHHHHHHHHHHHHHHHhcccC
Confidence 579999999999886554332 3689999999999998865554444432 389999996 666899999999986 4
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEecccc
Q 000500 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1460)
Q Consensus 359 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEAH 438 (1460)
+++.+++|+..........+. ......+|+|+|+..+.... .+ -+..+|||||+|
T Consensus 313 i~v~lltg~~~~~~r~~~~~~----------------------i~~g~~~IiVgT~~ll~~~~-~~--~~l~lvVIDEaH 367 (630)
T TIGR00643 313 IEVALLTGSLKGKRRKELLET----------------------IASGQIHLVVGTHALIQEKV-EF--KRLALVIIDEQH 367 (630)
T ss_pred cEEEEEecCCCHHHHHHHHHH----------------------HhCCCCCEEEecHHHHhccc-cc--cccceEEEechh
Confidence 888889987554321111100 01246789999999876432 22 245799999999
Q ss_pred ccCCcchHHHHHHHh-cc---ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhch
Q 000500 439 RLKNKDSKLFSSLKQ-YS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1460)
Q Consensus 439 rlKN~~Sk~~~al~~-l~---~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p 514 (1460)
++.-. ....+.. .. ..+.|++||||....+. +..+ ..+
T Consensus 368 ~fg~~---qr~~l~~~~~~~~~~~~l~~SATp~prtl~----l~~~----------------~~l--------------- 409 (630)
T TIGR00643 368 RFGVE---QRKKLREKGQGGFTPHVLVMSATPIPRTLA----LTVY----------------GDL--------------- 409 (630)
T ss_pred hccHH---HHHHHHHhcccCCCCCEEEEeCCCCcHHHH----HHhc----------------CCc---------------
Confidence 97432 2222322 22 46789999999653211 0000 000
Q ss_pred hhhhhhhhhhhhcCCCcee--EEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCC
Q 000500 515 HLLRRVKKDVMKELPPKKE--LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (1460)
Q Consensus 515 ~~LRR~K~dv~~~LP~k~e--~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~ 592 (1460)
...+...+|+... ....+.-..
T Consensus 410 ------~~~~i~~~p~~r~~i~~~~~~~~~-------------------------------------------------- 433 (630)
T TIGR00643 410 ------DTSIIDELPPGRKPITTVLIKHDE-------------------------------------------------- 433 (630)
T ss_pred ------ceeeeccCCCCCCceEEEEeCcch--------------------------------------------------
Confidence 0000112222110 000000000
Q ss_pred cccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchh--------hHHHHHHHHHh--cCCeEEEEecCCCHHH
Q 000500 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQH--------MLDLLEDYLTF--KKWQYERIDGKVGGAE 662 (1460)
Q Consensus 593 ~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~--------~LdiLed~L~~--~g~~~~ridGs~~~~e 662 (1460)
+ ..+...+.+....|++++|||.... ....+.+.|.. .++++..++|.++..+
T Consensus 434 ----------------~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~e 496 (630)
T TIGR00643 434 ----------------K-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDE 496 (630)
T ss_pred ----------------H-HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHH
Confidence 0 1111222233345778888886542 23344444443 4788999999999999
Q ss_pred HHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCC-ChhhHHHHHHhhcccCCCCceE
Q 000500 663 RQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKVM 728 (1460)
Q Consensus 663 Rq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdW-NP~~d~QAigRahRiGQ~k~V~ 728 (1460)
|..+++.|.++. ..+|++|.+.++|||++.+++||+++.+. +-..+.|+.||++|-|....+.
T Consensus 497 R~~i~~~F~~g~---~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 497 KEAVMEEFREGE---VDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred HHHHHHHHHcCC---CCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE
Confidence 999999998744 34899999999999999999999999984 6788999999999998765444
No 50
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.83 E-value=1.4e-18 Score=223.40 Aligned_cols=305 Identities=16% Similarity=0.212 Sum_probs=199.1
Q ss_pred CCCCHHHHHHHHHHHHhhhcC--CcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCC--
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ-- 358 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~--~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P~-- 358 (1460)
.+|.++|..++.-+...+..+ .+.+|..++|+|||+.++..+......+ ..+||++|. .+..|+...+.+|++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g-~q~lilaPT~~LA~Q~~~~l~~l~~~~~ 338 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAG-YQAALMAPTEILAEQHYENLKKLLEPLG 338 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 579999999999886655432 4789999999999998876554444332 379999996 6668899999999865
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEecccc
Q 000500 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1460)
Q Consensus 359 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEAH 438 (1460)
+++.+++|+......-..... ......+|+|+|+..+.... .+. +..+|||||+|
T Consensus 339 i~v~ll~G~~~~~~r~~~~~~----------------------l~~g~~~IvVgT~~ll~~~v-~~~--~l~lvVIDE~H 393 (681)
T PRK10917 339 IRVALLTGSLKGKERREILEA----------------------IASGEADIVIGTHALIQDDV-EFH--NLGLVIIDEQH 393 (681)
T ss_pred cEEEEEcCCCCHHHHHHHHHH----------------------HhCCCCCEEEchHHHhcccc-hhc--ccceEEEechh
Confidence 788888887654221111100 01246789999998875321 222 45789999999
Q ss_pred ccCCcchHHHHHHHhc-cccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhhh
Q 000500 439 RLKNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1460)
Q Consensus 439 rlKN~~Sk~~~al~~l-~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~L 517 (1460)
++.- .....+... ...+.|+|||||....+. +.. |.. +..
T Consensus 394 rfg~---~qr~~l~~~~~~~~iL~~SATp~prtl~----~~~----------------~g~-------------~~~--- 434 (681)
T PRK10917 394 RFGV---EQRLALREKGENPHVLVMTATPIPRTLA----MTA----------------YGD-------------LDV--- 434 (681)
T ss_pred hhhH---HHHHHHHhcCCCCCEEEEeCCCCHHHHH----HHH----------------cCC-------------Cce---
Confidence 9832 233334433 246789999999532210 000 000 000
Q ss_pred hhhhhhhhhcCCCce--eEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCccc
Q 000500 518 RRVKKDVMKELPPKK--ELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (1460)
Q Consensus 518 RR~K~dv~~~LP~k~--e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~~ 595 (1460)
.+...+|+.. .....+.
T Consensus 435 -----s~i~~~p~~r~~i~~~~~~-------------------------------------------------------- 453 (681)
T PRK10917 435 -----SVIDELPPGRKPITTVVIP-------------------------------------------------------- 453 (681)
T ss_pred -----EEEecCCCCCCCcEEEEeC--------------------------------------------------------
Confidence 0001122210 0000000
Q ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchh--------hHHHHHHHHHhc--CCeEEEEecCCCHHHHHH
Q 000500 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQH--------MLDLLEDYLTFK--KWQYERIDGKVGGAERQI 665 (1460)
Q Consensus 596 ~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~--------~LdiLed~L~~~--g~~~~ridGs~~~~eRq~ 665 (1460)
..+...+...+....+.|++++|||..+. ....+.+.|... ++++..++|+++..+|..
T Consensus 454 -----------~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~ 522 (681)
T PRK10917 454 -----------DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDA 522 (681)
T ss_pred -----------cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHH
Confidence 00001112223333367889999987542 233445555443 578999999999999999
Q ss_pred HHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCC-ChhhHHHHHHhhcccCCCCceE
Q 000500 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKVM 728 (1460)
Q Consensus 666 ~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdW-NP~~d~QAigRahRiGQ~k~V~ 728 (1460)
++++|.++. +.+|++|.+.++|||++.+++||+++++. ....+.|+.||++|-|....+.
T Consensus 523 i~~~F~~g~---~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 583 (681)
T PRK10917 523 VMAAFKAGE---IDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCV 583 (681)
T ss_pred HHHHHHcCC---CCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEE
Confidence 999998643 44899999999999999999999999984 5688999999999988754443
No 51
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.83 E-value=1.5e-18 Score=224.16 Aligned_cols=331 Identities=17% Similarity=0.195 Sum_probs=213.7
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHH-HHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHC-CCCeE
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQMNV 361 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~-P~l~v 361 (1460)
.|+++|.+++..+ ..+.++|+...||+|||+..+ .++..+........|||+|. .|..|-.+++..+. .++++
T Consensus 36 ~p~~~Q~~ai~~i----l~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v 111 (742)
T TIGR03817 36 RPWQHQARAAELA----HAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRP 111 (742)
T ss_pred cCCHHHHHHHHHH----HCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEE
Confidence 6999999999876 678999999999999999864 44555544333479999995 66678888888875 35788
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--------cccCCCcceEEE
Q 000500 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--------ASLKPIKWQCMI 433 (1460)
Q Consensus 362 vvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~--------~~L~~i~w~~VI 433 (1460)
.+|.|+...... .. + ....+|+|||++++.... ..|. ...+||
T Consensus 112 ~~~~Gdt~~~~r-~~--i------------------------~~~~~IivtTPd~L~~~~L~~~~~~~~~l~--~l~~vV 162 (742)
T TIGR03817 112 ATYDGDTPTEER-RW--A------------------------REHARYVLTNPDMLHRGILPSHARWARFLR--RLRYVV 162 (742)
T ss_pred EEEeCCCCHHHH-HH--H------------------------hcCCCEEEEChHHHHHhhccchhHHHHHHh--cCCEEE
Confidence 889887653321 00 0 123589999999986321 1122 346899
Q ss_pred eccccccCCc-chHHHHHHHhc---c-----ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHH
Q 000500 434 VDEGHRLKNK-DSKLFSSLKQY---S-----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ 504 (1460)
Q Consensus 434 vDEAHrlKN~-~Sk~~~al~~l---~-----~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~ 504 (1460)
|||||++.+. .+.+...+..+ . ....+++|||- ++..++.. .+...
T Consensus 163 iDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi--~n~~~~~~---~l~g~-------------------- 217 (742)
T TIGR03817 163 IDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATT--ADPAAAAS---RLIGA-------------------- 217 (742)
T ss_pred EeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCC--CCHHHHHH---HHcCC--------------------
Confidence 9999999652 23333333332 1 23568999994 23333221 11000
Q ss_pred HHHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcc
Q 000500 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY 584 (1460)
Q Consensus 505 i~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~ 584 (1460)
|+.+ ... ..-|......+.+..... . + ....
T Consensus 218 ---------~~~~--i~~---~~~~~~~~~~~~~~p~~~-----~-~----------~~~~------------------- 248 (742)
T TIGR03817 218 ---------PVVA--VTE---DGSPRGARTVALWEPPLT-----E-L----------TGEN------------------- 248 (742)
T ss_pred ---------CeEE--ECC---CCCCcCceEEEEecCCcc-----c-c----------cccc-------------------
Confidence 0000 000 011111111111110000 0 0 0000
Q ss_pred cccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhc--------CCeEEEEec
Q 000500 585 MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--------KWQYERIDG 656 (1460)
Q Consensus 585 L~~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~--------g~~~~ridG 656 (1460)
+. + ... .....+..+|..++ ..+.++|||++.....+.|..+|... +.++..++|
T Consensus 249 ---~~-~-~r~--------~~~~~~~~~l~~l~----~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hg 311 (742)
T TIGR03817 249 ---GA-P-VRR--------SASAEAADLLADLV----AEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRA 311 (742)
T ss_pred ---cc-c-ccc--------chHHHHHHHHHHHH----HCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheec
Confidence 00 0 000 00112333333333 45889999999999999999888653 567888999
Q ss_pred CCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCC
Q 000500 657 KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1460)
Q Consensus 657 s~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1460)
+++.++|.++.++|.+ +.+.+|++|.++++|||+...|+||+|+.|-+...+.|++||++|.|+... ++-++..+
T Consensus 312 g~~~~eR~~ie~~f~~---G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~ 386 (742)
T TIGR03817 312 GYLPEDRRELERALRD---GELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDD 386 (742)
T ss_pred CCCHHHHHHHHHHHHc---CCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCC
Confidence 9999999999999976 455689999999999999999999999999999999999999999997643 44556666
Q ss_pred CHHHHHHH
Q 000500 737 SIEERMMQ 744 (1460)
Q Consensus 737 TiEE~I~e 744 (1460)
..|..++.
T Consensus 387 ~~d~~~~~ 394 (742)
T TIGR03817 387 PLDTYLVH 394 (742)
T ss_pred hHHHHHHh
Confidence 77776554
No 52
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.83 E-value=1e-18 Score=228.00 Aligned_cols=309 Identities=17% Similarity=0.205 Sum_probs=203.7
Q ss_pred CCCCHHHHHHHHHHHHhhhcC--CcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCC--
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ-- 358 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~--~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P~-- 358 (1460)
.++.|+|..++..+..-+..+ .+.++..++|.|||..++..+......+ ..+||+||. .+..|....|.+++..
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g-~qvlvLvPT~~LA~Q~~~~f~~~~~~~~ 528 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-KQVAVLVPTTLLAQQHFETFKERFANFP 528 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC-CeEEEEeCcHHHHHHHHHHHHHHhccCC
Confidence 568999999999886554443 4789999999999998765544333333 479999996 6668889999988755
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEecccc
Q 000500 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1460)
Q Consensus 359 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEAH 438 (1460)
+++.+++|.......-.... .....+.+|||+|+..+.... .+. +..+|||||+|
T Consensus 529 i~v~~Lsg~~~~~e~~~~~~----------------------~l~~g~~dIVIGTp~ll~~~v-~f~--~L~llVIDEah 583 (926)
T TIGR00580 529 VTIELLSRFRSAKEQNEILK----------------------ELASGKIDILIGTHKLLQKDV-KFK--DLGLLIIDEEQ 583 (926)
T ss_pred cEEEEEeccccHHHHHHHHH----------------------HHHcCCceEEEchHHHhhCCC-Ccc--cCCEEEeeccc
Confidence 45566666543222111100 001235789999997764322 222 45789999999
Q ss_pred ccCCcchHHHHHHHhcc-ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhhh
Q 000500 439 RLKNKDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1460)
Q Consensus 439 rlKN~~Sk~~~al~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~L 517 (1460)
++.- .....++.+. ..+.|+|||||....+.. .+..+ ..+.++
T Consensus 584 rfgv---~~~~~L~~~~~~~~vL~~SATpiprtl~~---~l~g~------------------------------~d~s~I 627 (926)
T TIGR00580 584 RFGV---KQKEKLKELRTSVDVLTLSATPIPRTLHM---SMSGI------------------------------RDLSII 627 (926)
T ss_pred ccch---hHHHHHHhcCCCCCEEEEecCCCHHHHHH---HHhcC------------------------------CCcEEE
Confidence 9742 3344555554 457899999996432211 00000 000000
Q ss_pred hhhhhhhhhcCCCceeEEE---eecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000500 518 RRVKKDVMKELPPKKELIL---RVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1460)
Q Consensus 518 RR~K~dv~~~LP~k~e~iv---~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~ 594 (1460)
..||.....+ .++.+.
T Consensus 628 ---------~~~p~~R~~V~t~v~~~~~---------------------------------------------------- 646 (926)
T TIGR00580 628 ---------ATPPEDRLPVRTFVMEYDP---------------------------------------------------- 646 (926)
T ss_pred ---------ecCCCCccceEEEEEecCH----------------------------------------------------
Confidence 0111110000 000000
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhc--CCeEEEEecCCCHHHHHHHHHHHhc
Q 000500 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNA 672 (1460)
Q Consensus 595 ~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~--g~~~~ridGs~~~~eRq~~Id~Fn~ 672 (1460)
..+...++.. ...|.+|+||++.+...+.+.+.|... ++++..++|.++..+|.+++.+|.+
T Consensus 647 ---------------~~i~~~i~~e-l~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~ 710 (926)
T TIGR00580 647 ---------------ELVREAIRRE-LLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK 710 (926)
T ss_pred ---------------HHHHHHHHHH-HHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc
Confidence 0000011122 235789999999999999999999874 7899999999999999999999987
Q ss_pred cCCCCeeEEeeccccccccCccCCCEEEEecCC-CChhhHHHHHHhhcccCCCCceEEEEEecCC
Q 000500 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1460)
Q Consensus 673 ~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~Dsd-WNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1460)
+. +.+||+|.+.+.|||++.+++||+++.+ +....+.|+.||++|.|.. -++|-|+..+
T Consensus 711 Gk---~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~--g~aill~~~~ 770 (926)
T TIGR00580 711 GE---FQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK--AYAYLLYPHQ 770 (926)
T ss_pred CC---CCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC--eEEEEEECCc
Confidence 54 4589999999999999999999999986 4567889999999998764 4555566443
No 53
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.81 E-value=1.6e-18 Score=230.51 Aligned_cols=303 Identities=18% Similarity=0.206 Sum_probs=199.6
Q ss_pred CCCCHHHHHHHHHHHHhhhc--CCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCC--
Q 000500 284 GSLHPYQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ-- 358 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~--~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P~-- 358 (1460)
.++.+.|.+++.-+..-+.. ..+.++..++|+|||.+++..+...... ...+||+||. .+..|..+.|.+++..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~ 677 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-HKQVAVLVPTTLLAQQHYDNFRDRFANWP 677 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-CCeEEEEeCcHHHHHHHHHHHHHhhccCC
Confidence 47999999999876554433 3678999999999999876443333322 3489999997 5557888888876644
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEecccc
Q 000500 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1460)
Q Consensus 359 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEAH 438 (1460)
+++.+++|...........+- ......+|||+|++.+.... .--+..+|||||+|
T Consensus 678 v~i~~l~g~~s~~e~~~il~~----------------------l~~g~~dIVVgTp~lL~~~v---~~~~L~lLVIDEah 732 (1147)
T PRK10689 678 VRIEMLSRFRSAKEQTQILAE----------------------AAEGKIDILIGTHKLLQSDV---KWKDLGLLIVDEEH 732 (1147)
T ss_pred ceEEEEECCCCHHHHHHHHHH----------------------HHhCCCCEEEECHHHHhCCC---CHhhCCEEEEechh
Confidence 456666665433221111000 01235789999998775322 12356899999999
Q ss_pred ccCCcchHHHHHHHhcc-ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhhh
Q 000500 439 RLKNKDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1460)
Q Consensus 439 rlKN~~Sk~~~al~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~L 517 (1460)
++.. .....++.+. ....|++||||++..+.- .+.++ ..+.++
T Consensus 733 rfG~---~~~e~lk~l~~~~qvLl~SATpiprtl~l---~~~gl------------------------------~d~~~I 776 (1147)
T PRK10689 733 RFGV---RHKERIKAMRADVDILTLTATPIPRTLNM---AMSGM------------------------------RDLSII 776 (1147)
T ss_pred hcch---hHHHHHHhcCCCCcEEEEcCCCCHHHHHH---HHhhC------------------------------CCcEEE
Confidence 9842 2334455554 457899999996543211 00110 000000
Q ss_pred hhhhhhhhhcCCCceeEE---EeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000500 518 RRVKKDVMKELPPKKELI---LRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1460)
Q Consensus 518 RR~K~dv~~~LP~k~e~i---v~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~ 594 (1460)
..|+..... +......
T Consensus 777 ---------~~~p~~r~~v~~~~~~~~~---------------------------------------------------- 795 (1147)
T PRK10689 777 ---------ATPPARRLAVKTFVREYDS---------------------------------------------------- 795 (1147)
T ss_pred ---------ecCCCCCCCceEEEEecCc----------------------------------------------------
Confidence 011110000 0000000
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhc--CCeEEEEecCCCHHHHHHHHHHHhc
Q 000500 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNA 672 (1460)
Q Consensus 595 ~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~--g~~~~ridGs~~~~eRq~~Id~Fn~ 672 (1460)
......++..+. +|.+|+||++.+..++.+.+.|... ++++..++|.++..+|.+++.+|.+
T Consensus 796 ---------------~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~ 859 (1147)
T PRK10689 796 ---------------LVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 859 (1147)
T ss_pred ---------------HHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh
Confidence 000112233332 4678999999999999999999876 7899999999999999999999987
Q ss_pred cCCCCeeEEeeccccccccCccCCCEEEEecCC-CChhhHHHHHHhhcccCCCCceE
Q 000500 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVM 728 (1460)
Q Consensus 673 ~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~Dsd-WNP~~d~QAigRahRiGQ~k~V~ 728 (1460)
+. +.+|++|.+.+.|||++.+++||+.+++ |....+.|+.||++|.|.+-.++
T Consensus 860 Gk---~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ 913 (1147)
T PRK10689 860 QR---FNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAW 913 (1147)
T ss_pred cC---CCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEE
Confidence 44 4589999999999999999999998876 67788999999999988764333
No 54
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=9.1e-18 Score=209.29 Aligned_cols=328 Identities=20% Similarity=0.338 Sum_probs=225.3
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHH-HHHHHHHHh--CCCCc-EEEEEcc-ccHHHHHHHHHHHCC-
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFG--ERISP-HLVVAPL-STLRNWEREFATWAP- 357 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~L~~--~~~~p-~LIVvP~-sll~qW~~E~~kw~P- 357 (1460)
..+.|.|..++--+ ..++..|....+|+|||... |.+|..+.. ....+ .||++|. .+..|-.+++..+..
T Consensus 50 ~~pt~IQ~~~IP~~----l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~ 125 (513)
T COG0513 50 EEPTPIQLAAIPLI----LAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN 125 (513)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhh
Confidence 45889999998665 56799999999999999874 455555442 22223 9999996 666788888877763
Q ss_pred --CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hcccCCCcceEEE
Q 000500 358 --QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMI 433 (1460)
Q Consensus 358 --~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d--~~~L~~i~w~~VI 433 (1460)
.+++++++|...-...+... .. ..||||.|+..+... ...|..-...++|
T Consensus 126 ~~~~~~~~i~GG~~~~~q~~~l-------------------------~~-~~~ivVaTPGRllD~i~~~~l~l~~v~~lV 179 (513)
T COG0513 126 LGGLRVAVVYGGVSIRKQIEAL-------------------------KR-GVDIVVATPGRLLDLIKRGKLDLSGVETLV 179 (513)
T ss_pred cCCccEEEEECCCCHHHHHHHH-------------------------hc-CCCEEEECccHHHHHHHcCCcchhhcCEEE
Confidence 57788888876655444332 11 388999999988743 2234445667899
Q ss_pred eccccccCCcc--hHHHHHHHhccc-cceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHH
Q 000500 434 VDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1460)
Q Consensus 434 vDEAHrlKN~~--Sk~~~al~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~ 510 (1460)
+|||.++-+.. ..+...+..+.. ...++.|||--. .+ ..|..
T Consensus 180 lDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~-~i----------------------------------~~l~~ 224 (513)
T COG0513 180 LDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPD-DI----------------------------------RELAR 224 (513)
T ss_pred eccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCH-HH----------------------------------HHHHH
Confidence 99999997753 345555555554 556889999521 11 11110
Q ss_pred -hh-chhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000500 511 -ML-APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1460)
Q Consensus 511 -~L-~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~ 588 (1460)
.+ .|..+...........+......+.|.-
T Consensus 225 ~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~------------------------------------------------ 256 (513)
T COG0513 225 RYLNDPVEIEVSVEKLERTLKKIKQFYLEVES------------------------------------------------ 256 (513)
T ss_pred HHccCCcEEEEccccccccccCceEEEEEeCC------------------------------------------------
Confidence 00 1110000000000001111111111110
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHH
Q 000500 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1460)
Q Consensus 589 ~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id 668 (1460)
...|+.+|..++..... .++|||+......+.|...|...|+++..|+|++++.+|.++++
T Consensus 257 -----------------~~~k~~~L~~ll~~~~~--~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~ 317 (513)
T COG0513 257 -----------------EEEKLELLLKLLKDEDE--GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALE 317 (513)
T ss_pred -----------------HHHHHHHHHHHHhcCCC--CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHH
Confidence 01477777777765432 37999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCCHHHHHHHHHHH
Q 000500 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (1460)
Q Consensus 669 ~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~a~~ 748 (1460)
.|++. .+-+|++|.++++||++...++||.||.+.++..|++|+||.+|.|.+- ..+.|++. .-|...+..+.+
T Consensus 318 ~F~~g---~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~l~~ie~ 391 (513)
T COG0513 318 KFKDG---ELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKKLKRIEK 391 (513)
T ss_pred HHHcC---CCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCC--eEEEEeCc-HHHHHHHHHHHH
Confidence 99854 3448999999999999999999999999999999999999999999443 45567766 235556655555
Q ss_pred H
Q 000500 749 K 749 (1460)
Q Consensus 749 K 749 (1460)
.
T Consensus 392 ~ 392 (513)
T COG0513 392 R 392 (513)
T ss_pred H
Confidence 4
No 55
>PRK02362 ski2-like helicase; Provisional
Probab=99.77 E-value=3.4e-17 Score=213.30 Aligned_cols=317 Identities=20% Similarity=0.179 Sum_probs=199.5
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHH-HHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCC-CCe
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMN 360 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa-~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P-~l~ 360 (1460)
.+|+|+|.+++.-+ +..+.++|++..+|.|||+.+.. ++..+. ..+++|+|+|. ++..|+.++|.++.+ +.+
T Consensus 22 ~~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~--~~~kal~i~P~raLa~q~~~~~~~~~~~g~~ 96 (737)
T PRK02362 22 EELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA--RGGKALYIVPLRALASEKFEEFERFEELGVR 96 (737)
T ss_pred CcCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHHHHhhcCCCE
Confidence 36999999998642 35788999999999999999854 444443 23489999995 888999999988753 678
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc----ccCCCcceEEEecc
Q 000500 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----SLKPIKWQCMIVDE 436 (1460)
Q Consensus 361 vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~----~L~~i~w~~VIvDE 436 (1460)
+.+++|+...... .....+|+|+|++.+..... .+. ..++|||||
T Consensus 97 v~~~tGd~~~~~~-----------------------------~l~~~~IiV~Tpek~~~llr~~~~~l~--~v~lvViDE 145 (737)
T PRK02362 97 VGISTGDYDSRDE-----------------------------WLGDNDIIVATSEKVDSLLRNGAPWLD--DITCVVVDE 145 (737)
T ss_pred EEEEeCCcCcccc-----------------------------ccCCCCEEEECHHHHHHHHhcChhhhh--hcCEEEEEC
Confidence 8888886432110 01346899999998744221 122 358999999
Q ss_pred ccccCCcc--hHHHHHHHhc----cccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHH
Q 000500 437 GHRLKNKD--SKLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1460)
Q Consensus 437 AHrlKN~~--Sk~~~al~~l----~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~ 510 (1460)
+|.+.+.. ..+-..+..+ .....++||||. .|..++.. ++....+.+
T Consensus 146 ~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl--~n~~~la~---wl~~~~~~~---------------------- 198 (737)
T PRK02362 146 VHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATI--GNADELAD---WLDAELVDS---------------------- 198 (737)
T ss_pred ccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccC--CCHHHHHH---HhCCCcccC----------------------
Confidence 99996532 2222222222 234578999996 34455443 222211100
Q ss_pred hhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCC
Q 000500 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1460)
Q Consensus 511 ~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e 590 (1460)
..+|.-+ ...+.... . ++ . ... +..+.
T Consensus 199 ~~rpv~l--------------~~~v~~~~--~----~~----------~---~~~----------------~~~~~---- 225 (737)
T PRK02362 199 EWRPIDL--------------REGVFYGG--A----IH----------F---DDS----------------QREVE---- 225 (737)
T ss_pred CCCCCCC--------------eeeEecCC--e----ec----------c---ccc----------------cccCC----
Confidence 0011100 00000000 0 00 0 000 00000
Q ss_pred CCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhc-----------------------
Q 000500 591 PDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK----------------------- 647 (1460)
Q Consensus 591 ~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~----------------------- 647 (1460)
...+.. ...++......+.++|||++.......+...|...
T Consensus 226 ---------------~~~~~~-~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~ 289 (737)
T PRK02362 226 ---------------VPSKDD-TLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREV 289 (737)
T ss_pred ---------------CccchH-HHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence 000001 11122223346789999999887766665555321
Q ss_pred -------------CCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEE----ec-----CC
Q 000500 648 -------------KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YD-----SD 705 (1460)
Q Consensus 648 -------------g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi----~D-----sd 705 (1460)
...+..++|+++..+|..+.+.|.+ +.+.+|++|.+++.|||+++..+||. || .+
T Consensus 290 ~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~---G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~ 366 (737)
T PRK02362 290 SDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRD---RLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQP 366 (737)
T ss_pred cCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHc---CCCeEEEechhhhhhcCCCceEEEEecceeecCCCCcee
Confidence 1357788999999999999999976 45569999999999999999887776 77 47
Q ss_pred CChhhHHHHHHhhcccCCCCceEEEEEecC
Q 000500 706 WNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1460)
Q Consensus 706 WNP~~d~QAigRahRiGQ~k~V~VyrLvt~ 735 (1460)
.++..+.|++|||+|.|....-.++-++..
T Consensus 367 ~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 367 IPVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred CCHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 788999999999999998765555555543
No 56
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.76 E-value=8e-17 Score=193.14 Aligned_cols=328 Identities=14% Similarity=0.198 Sum_probs=196.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhC-CCCcEEEEEc-cccHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCC
Q 000500 307 VILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP-LSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKN 384 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~-~~~p~LIVvP-~sll~qW~~E~~kw~P~l~vvvy~G~~~~r~~i~~~e~~~~~~ 384 (1460)
.++..++|+|||.+++.++...... ..+++++|+| .+++.|+.+.+..++.. ++..++|...... .... .+.
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~-~~~~----~~~ 75 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKR-IKEM----GDS 75 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHH-Hhcc----CCc
Confidence 5789999999999988877665543 3358999999 58889999999998743 5666676543211 0000 000
Q ss_pred chhhhccccCccccccccccccccEEEecHHHHHhhhcc-c-------CCCcceEEEeccccccCCcch-HHHHHHHhcc
Q 000500 385 PKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-L-------KPIKWQCMIVDEGHRLKNKDS-KLFSSLKQYS 455 (1460)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~-L-------~~i~w~~VIvDEAHrlKN~~S-k~~~al~~l~ 455 (1460)
. ..... . .............+++++|++.+...... + ..+...+||+||+|.+..... .+...+..+.
T Consensus 76 ~-~~~~~-~-~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~ 152 (358)
T TIGR01587 76 E-EFEHL-F-PLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK 152 (358)
T ss_pred h-hHHHH-H-HHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 0 00000 0 00000001123567999999987653222 2 122336899999999875322 2333333332
Q ss_pred --ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhhhhhhhhhhhhcCCCcee
Q 000500 456 --TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKE 533 (1460)
Q Consensus 456 --~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~LRR~K~dv~~~LP~k~e 533 (1460)
....+++|||+- ..+.+ | +..+.. ......++
T Consensus 153 ~~~~~~i~~SATlp-~~l~~----------------------~---------------~~~~~~-----~~~~~~~~--- 186 (358)
T TIGR01587 153 DNDVPILLMSATLP-KFLKE----------------------Y---------------AEKIGY-----VEFNEPLD--- 186 (358)
T ss_pred HcCCCEEEEecCch-HHHHH----------------------H---------------HhcCCC-----cccccCCC---
Confidence 235689999962 00000 0 000000 00000000
Q ss_pred EEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHH
Q 000500 534 LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLL 613 (1460)
Q Consensus 534 ~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~~~~~~~~~lv~~SgKl~~L 613 (1460)
..+.. ....|++..... ....|...+
T Consensus 187 ------~~~~~---------------------------------~~~~~~~~~~~~---------------~~~~~~~~l 212 (358)
T TIGR01587 187 ------LKEER---------------------------------RFERHRFIKIES---------------DKVGEISSL 212 (358)
T ss_pred ------Ccccc---------------------------------ccccccceeecc---------------ccccCHHHH
Confidence 00000 000111110000 011234445
Q ss_pred HHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCC--eEEEEecCCCHHHHHHH----HHHHhccCCCCeeEEeecccc
Q 000500 614 DKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKW--QYERIDGKVGGAERQIR----IDRFNAKNSSRFCFLLSTRAG 687 (1460)
Q Consensus 614 ~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~--~~~ridGs~~~~eRq~~----Id~Fn~~~s~~~vfLlSTrAg 687 (1460)
.+++..+ ..+.++|||++.....+.+...|...+. .+..++|.++..+|.++ ++.|.+ +...+|++|.+.
T Consensus 213 ~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~---~~~~ilvaT~~~ 288 (358)
T TIGR01587 213 ERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK---NEKFVIVATQVI 288 (358)
T ss_pred HHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC---CCCeEEEECcch
Confidence 5555433 4578999999999999999999987766 48999999999999764 788865 344589999999
Q ss_pred ccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCC----ceEEEEEecCC---CHHHHHHHHHHHHH
Q 000500 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN----KVMIFRLITRG---SIEERMMQMTKKKM 750 (1460)
Q Consensus 688 g~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k----~V~VyrLvt~~---TiEE~I~e~a~~K~ 750 (1460)
+.|||+. +++||.++.+ +..++|++||++|.|... .|.||.....+ .++..++++...++
T Consensus 289 ~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~~~~ 355 (358)
T TIGR01587 289 EASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTIQKL 355 (358)
T ss_pred hceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHHHHH
Confidence 9999994 8999988765 889999999999999764 45666555444 56666776665554
No 57
>PRK00254 ski2-like helicase; Provisional
Probab=99.75 E-value=1.4e-16 Score=207.13 Aligned_cols=317 Identities=19% Similarity=0.191 Sum_probs=194.4
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHH-HHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCC-CCe
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMN 360 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P-~l~ 360 (1460)
.+|+|+|.+++.-. +..+.++|++..+|.|||+.+ ++++..+.. ..+.+|+|+|. +++.++.++|..|.. +.+
T Consensus 22 ~~l~~~Q~~ai~~~---~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~ 97 (720)
T PRK00254 22 EELYPPQAEALKSG---VLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-EGGKAVYLVPLKALAEEKYREFKDWEKLGLR 97 (720)
T ss_pred CCCCHHHHHHHHHH---HhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-cCCeEEEEeChHHHHHHHHHHHHHHhhcCCE
Confidence 36999999998631 267899999999999999998 455555443 33589999995 777889988887753 577
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc----ccCCCcceEEEecc
Q 000500 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----SLKPIKWQCMIVDE 436 (1460)
Q Consensus 361 vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~----~L~~i~w~~VIvDE 436 (1460)
+..++|....... ....++|+|+|++.+..... .+. ..++|||||
T Consensus 98 v~~~~Gd~~~~~~-----------------------------~~~~~~IiV~Tpe~~~~ll~~~~~~l~--~l~lvViDE 146 (720)
T PRK00254 98 VAMTTGDYDSTDE-----------------------------WLGKYDIIIATAEKFDSLLRHGSSWIK--DVKLVVADE 146 (720)
T ss_pred EEEEeCCCCCchh-----------------------------hhccCCEEEEcHHHHHHHHhCCchhhh--cCCEEEEcC
Confidence 7888876432110 01357899999998754321 222 457899999
Q ss_pred ccccCC--cchHHHHHHHhcc-ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhc
Q 000500 437 GHRLKN--KDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1460)
Q Consensus 437 AHrlKN--~~Sk~~~al~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~ 513 (1460)
+|.+.. ....+...+..+. ....++||||.- |..++.. |+....+.. ..+
T Consensus 147 ~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~--n~~~la~---wl~~~~~~~----------------------~~r 199 (720)
T PRK00254 147 IHLIGSYDRGATLEMILTHMLGRAQILGLSATVG--NAEELAE---WLNAELVVS----------------------DWR 199 (720)
T ss_pred cCccCCccchHHHHHHHHhcCcCCcEEEEEccCC--CHHHHHH---HhCCccccC----------------------CCC
Confidence 999964 3344444555544 345789999972 3455443 222211100 000
Q ss_pred hhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000500 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1460)
Q Consensus 514 p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~ 593 (1460)
| .|-... ++ ..-. ..+. .+..
T Consensus 200 p-------------v~l~~~-~~-~~~~----~~~~-------------~~~~--------------------------- 220 (720)
T PRK00254 200 P-------------VKLRKG-VF-YQGF----LFWE-------------DGKI--------------------------- 220 (720)
T ss_pred C-------------Ccceee-Ee-cCCe----eecc-------------Ccch---------------------------
Confidence 1 010000 00 0000 0000 0000
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHh---------------------------
Q 000500 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--------------------------- 646 (1460)
Q Consensus 594 ~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~--------------------------- 646 (1460)
... ...+..++..+...+.++|||+........+...|..
T Consensus 221 -------~~~------~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (720)
T PRK00254 221 -------ERF------PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTN 287 (720)
T ss_pred -------hcc------hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCc
Confidence 000 0001112222333567788888776654433322210
Q ss_pred ------cCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEE-------ecCCC-ChhhHH
Q 000500 647 ------KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-------YDSDW-NPHADL 712 (1460)
Q Consensus 647 ------~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi-------~DsdW-NP~~d~ 712 (1460)
....+..++|+++.++|..+.+.|.++ .+.+|++|.+.+.|+|+++.++||. ++.+. ....+.
T Consensus 288 ~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G---~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~ 364 (720)
T PRK00254 288 EKLKKALRGGVAFHHAGLGRTERVLIEDAFREG---LIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQ 364 (720)
T ss_pred HHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCC---CCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHH
Confidence 123578899999999999999999863 4568999999999999998888774 22222 345789
Q ss_pred HHHHhhcccCCCCceEEEEEecCCC
Q 000500 713 QAMARAHRLGQTNKVMIFRLITRGS 737 (1460)
Q Consensus 713 QAigRahRiGQ~k~V~VyrLvt~~T 737 (1460)
|++|||+|.|..+.-.++-+++...
T Consensus 365 Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 365 QMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HhhhccCCCCcCCCceEEEEecCcc
Confidence 9999999998776666666665543
No 58
>PRK01172 ski2-like helicase; Provisional
Probab=99.75 E-value=9.7e-17 Score=207.52 Aligned_cols=304 Identities=19% Similarity=0.208 Sum_probs=190.3
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCC-CCeE
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMNV 361 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P-~l~v 361 (1460)
.+|+|+|.++++.+ ..+.++|++.++|+|||+++...+......+ +..++|+|. ++..++.+++.++.. +..+
T Consensus 21 ~~l~~~Q~~ai~~l----~~~~nvlv~apTGSGKTl~a~lail~~l~~~-~k~v~i~P~raLa~q~~~~~~~l~~~g~~v 95 (674)
T PRK01172 21 FELYDHQRMAIEQL----RKGENVIVSVPTAAGKTLIAYSAIYETFLAG-LKSIYIVPLRSLAMEKYEELSRLRSLGMRV 95 (674)
T ss_pred CCCCHHHHHHHHHH----hcCCcEEEECCCCchHHHHHHHHHHHHHHhC-CcEEEEechHHHHHHHHHHHHHHhhcCCeE
Confidence 46999999999865 6788999999999999998865554443332 478999995 777889999887652 4666
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----hcccCCCcceEEEeccc
Q 000500 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKWQCMIVDEG 437 (1460)
Q Consensus 362 vvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d----~~~L~~i~w~~VIvDEA 437 (1460)
..+.|....... .....+|+|+|++.+... ...+. ++++|||||+
T Consensus 96 ~~~~G~~~~~~~-----------------------------~~~~~dIiv~Tpek~~~l~~~~~~~l~--~v~lvViDEa 144 (674)
T PRK01172 96 KISIGDYDDPPD-----------------------------FIKRYDVVILTSEKADSLIHHDPYIIN--DVGLIVADEI 144 (674)
T ss_pred EEEeCCCCCChh-----------------------------hhccCCEEEECHHHHHHHHhCChhHHh--hcCEEEEecc
Confidence 677765432100 012468999999876432 11222 4679999999
Q ss_pred cccCCcc--hHHHHHHH---hcc-ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHh
Q 000500 438 HRLKNKD--SKLFSSLK---QYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1460)
Q Consensus 438 HrlKN~~--Sk~~~al~---~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~ 511 (1460)
|.+.... ..+...+. .+. ....++||||+ .|..++. .|+....+.. .
T Consensus 145 H~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl--~n~~~la---~wl~~~~~~~----------------------~ 197 (674)
T PRK01172 145 HIIGDEDRGPTLETVLSSARYVNPDARILALSATV--SNANELA---QWLNASLIKS----------------------N 197 (674)
T ss_pred hhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCcc--CCHHHHH---HHhCCCccCC----------------------C
Confidence 9996432 22222222 222 23568999997 2344432 2222211100 0
Q ss_pred hchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000500 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1460)
Q Consensus 512 L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~ 591 (1460)
.+ ..| ....++... ..| .+....
T Consensus 198 ~r-------------~vp-l~~~i~~~~------~~~-------------------------------------~~~~~~ 220 (674)
T PRK01172 198 FR-------------PVP-LKLGILYRK------RLI-------------------------------------LDGYER 220 (674)
T ss_pred CC-------------CCC-eEEEEEecC------eee-------------------------------------eccccc
Confidence 00 011 111111000 000 000000
Q ss_pred CcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhc------------------------
Q 000500 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK------------------------ 647 (1460)
Q Consensus 592 ~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~------------------------ 647 (1460)
.+ ..+..++......|.++|||+......+.+...|...
T Consensus 221 ----------------~~-~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~ 283 (674)
T PRK01172 221 ----------------SQ-VDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEM 283 (674)
T ss_pred ----------------cc-ccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHH
Confidence 00 0022334444456788999998887776666666432
Q ss_pred -CCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecC---------CCChhhHHHHHHh
Q 000500 648 -KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDS---------DWNPHADLQAMAR 717 (1460)
Q Consensus 648 -g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~Ds---------dWNP~~d~QAigR 717 (1460)
...+..++|+++.++|..+.+.|.++ .+.+|++|.+++.|+|+++ .+||++|. ++++..+.|++||
T Consensus 284 l~~gv~~~hagl~~~eR~~ve~~f~~g---~i~VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GR 359 (674)
T PRK01172 284 LPHGVAFHHAGLSNEQRRFIEEMFRNR---YIKVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGR 359 (674)
T ss_pred HhcCEEEecCCCCHHHHHHHHHHHHcC---CCeEEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhc
Confidence 12356789999999999999999763 4458999999999999996 67887664 3577889999999
Q ss_pred hcccCCCCceE
Q 000500 718 AHRLGQTNKVM 728 (1460)
Q Consensus 718 ahRiGQ~k~V~ 728 (1460)
|+|.|....-.
T Consensus 360 AGR~g~d~~g~ 370 (674)
T PRK01172 360 AGRPGYDQYGI 370 (674)
T ss_pred CCCCCCCCcce
Confidence 99999766533
No 59
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.73 E-value=4.7e-16 Score=199.47 Aligned_cols=362 Identities=15% Similarity=0.117 Sum_probs=201.5
Q ss_pred CCCCHHHHHHHHHHHHhhhc------CCcEEEEecCCCCcHHHHHHHHHHHHhCC-CCcEEEEEc-cccHHHHHHHHHHH
Q 000500 284 GSLHPYQLEGLNFLRFSWSK------QTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWEREFATW 355 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~------~~~~ILADemGLGKTiqaIa~l~~L~~~~-~~p~LIVvP-~sll~qW~~E~~kw 355 (1460)
.-.|+||..+|+-+...+.. .++|+|.+.+|+|||++++.++..+.... ..++||||| ..|..||..+|..+
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 34789999999988776654 46899999999999999999988877543 348999999 57889999999998
Q ss_pred CCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh-hcccCCC----cce
Q 000500 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD-SASLKPI----KWQ 430 (1460)
Q Consensus 356 ~P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d-~~~L~~i----~w~ 430 (1460)
.+.... -.++ ...+... .......|+|||++.+... ...+..+ ...
T Consensus 317 ~~~~~~--~~~s---~~~L~~~------------------------l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~ 367 (667)
T TIGR00348 317 QKDCAE--RIES---IAELKRL------------------------LEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEV 367 (667)
T ss_pred CCCCCc--ccCC---HHHHHHH------------------------HhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCE
Confidence 753110 0111 1111110 0012356999999999752 1112221 123
Q ss_pred EEEeccccccCCcchHHHHHHH-hccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000500 431 CMIVDEGHRLKNKDSKLFSSLK-QYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1460)
Q Consensus 431 ~VIvDEAHrlKN~~Sk~~~al~-~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~ 509 (1460)
+||+|||||.-. ......++ .++...+++|||||+...-.+-+ ..|...|+.
T Consensus 368 lvIvDEaHrs~~--~~~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~--------------~~f~~~fg~----------- 420 (667)
T TIGR00348 368 VVIFDEAHRSQY--GELAKNLKKALKNASFFGFTGTPIFKKDRDTS--------------LTFAYVFGR----------- 420 (667)
T ss_pred EEEEEcCccccc--hHHHHHHHhhCCCCcEEEEeCCCccccccccc--------------ccccCCCCC-----------
Confidence 899999998642 23444553 56677899999999753211101 111000100
Q ss_pred HhhchhhhhhhhhhhhhcCCCceeEEEeec--CCHHHHHHHHHHHHHHHHHHHhcCCc--hhhHHHHHHHHHHHhCCccc
Q 000500 510 RMLAPHLLRRVKKDVMKELPPKKELILRVE--LSSKQKEYYKAILTRNYQILTRRGGA--QISLINVVMELRKLCCHPYM 585 (1460)
Q Consensus 510 ~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~--Ls~~Qk~~Y~~il~~~~~~l~~~~~~--~~~l~nil~~LRk~c~hP~L 585 (1460)
.+..|-+....+|= .+.|.....+.+. ++.. ..+..+............. ...+......+..
T Consensus 421 -~i~~Y~~~~AI~dG--~~~~i~Y~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------- 487 (667)
T TIGR00348 421 -YLHRYFITDAIRDG--LTVKIDYEDRLPEDHLDRK---KLDAFFDEIFELLPERIREITKESLKEKLQKTKK------- 487 (667)
T ss_pred -eEEEeeHHHHhhcC--CeeeEEEEecchhhccChH---HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHh-------
Confidence 01111111111110 1112222222221 1111 1111111111100000000 0011111111111
Q ss_pred ccCCCCCcccchHHHHHHHhhhhHHHHHHHHH-HHH----HHcCceEEEEecchhhHHHHHHHHHhc-----CCeEEEEe
Q 000500 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMM-VKL----KEQGHRVLIYSQFQHMLDLLEDYLTFK-----KWQYERID 655 (1460)
Q Consensus 586 ~~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL-~~l----~~~g~KVLIFSq~~~~LdiLed~L~~~-----g~~~~rid 655 (1460)
++.+...+..+.+.+ ..+ ...+.|.+|||........+.+.|... +...+.++
T Consensus 488 -----------------~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s 550 (667)
T TIGR00348 488 -----------------ILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMT 550 (667)
T ss_pred -----------------hhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEec
Confidence 111111122222211 111 223579999999988887777776443 34556677
Q ss_pred cCCCHH---------------------HHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHH
Q 000500 656 GKVGGA---------------------ERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQA 714 (1460)
Q Consensus 656 Gs~~~~---------------------eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QA 714 (1460)
|+.... ....++++|.++ +.+-+|+++....+|+|.+.++++++.-|--+ +..+|+
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~--~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQa 627 (667)
T TIGR00348 551 GKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE--ENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQA 627 (667)
T ss_pred CCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC--CCceEEEEEcccccccCCCccceEEEeccccc-cHHHHH
Confidence 764332 234789999764 34457888999999999999999999988765 568999
Q ss_pred HHhhccc-C-CCCceEEEEEec
Q 000500 715 MARAHRL-G-QTNKVMIFRLIT 734 (1460)
Q Consensus 715 igRahRi-G-Q~k~V~VyrLvt 734 (1460)
+||+.|+ + .+....|+.++.
T Consensus 628 i~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 628 IARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred HHHhccccCCCCCCEEEEECcC
Confidence 9999995 4 344567777764
No 60
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.72 E-value=3.1e-16 Score=199.66 Aligned_cols=107 Identities=23% Similarity=0.411 Sum_probs=89.0
Q ss_pred HHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHH-----HHHHHHhc----cC----CCCeeEEeecccc
Q 000500 621 KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ-----IRIDRFNA----KN----SSRFCFLLSTRAG 687 (1460)
Q Consensus 621 ~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq-----~~Id~Fn~----~~----s~~~vfLlSTrAg 687 (1460)
...+.++|||++.+...+.|...|...++ ..++|.+++.+|. .++++|.. .. .....+||+|.++
T Consensus 269 ~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVa 346 (844)
T TIGR02621 269 KDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAG 346 (844)
T ss_pred hhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchh
Confidence 35678999999999999999999998887 8999999999999 78999975 11 1124589999999
Q ss_pred ccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCc--eEEEEE
Q 000500 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNK--VMIFRL 732 (1460)
Q Consensus 688 g~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~--V~VyrL 732 (1460)
+.|||+.. ++||++..+ ...++||+||++|.|.... +.|+.+
T Consensus 347 erGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 347 EVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 99999975 999997766 4799999999999998643 455444
No 61
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.72 E-value=4.6e-16 Score=196.35 Aligned_cols=117 Identities=17% Similarity=0.173 Sum_probs=101.1
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeecc
Q 000500 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1460)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTr 685 (1460)
...|+..+.+.+..+...|..|||||..+...+.|...|...|+++..++|.....+|..+...|+. + .++++|.
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~---g--~VlIATd 480 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQK---G--AVTVATS 480 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCC---C--eEEEEcc
Confidence 4679999999999988899999999999999999999999999999999999988777666554432 3 3799999
Q ss_pred ccccccCcc---------CCCEEEEecCCCChhhHHHHHHhhcccCCCCceE
Q 000500 686 AGGLGINLA---------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1460)
Q Consensus 686 Agg~GINL~---------~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~ 728 (1460)
.+|.|+++. ..++||.|+++-+. .+.|+.||++|.|..-.+.
T Consensus 481 mAgRGtDI~l~~~v~~~GGL~vIit~~~ps~r-id~qr~GRtGRqG~~G~s~ 531 (762)
T TIGR03714 481 MAGRGTDIKLGKGVAELGGLAVIGTERMENSR-VDLQLRGRSGRQGDPGSSQ 531 (762)
T ss_pred ccccccCCCCCccccccCCeEEEEecCCCCcH-HHHHhhhcccCCCCceeEE
Confidence 999999999 78999999999665 5599999999999776544
No 62
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.72 E-value=1.1e-15 Score=193.78 Aligned_cols=328 Identities=21% Similarity=0.205 Sum_probs=217.6
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHH-HHHHHHHhCC-C----C-cEEEEEccccH-HHHHHHHHHH
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGER-I----S-PHLVVAPLSTL-RNWEREFATW 355 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~L~~~~-~----~-p~LIVvP~sll-~qW~~E~~kw 355 (1460)
.+|+|.|..++.-+ ..|.|+++...||+|||..|+ ..+..+...+ . + .+|-|.|+-.| ..-.+.+..|
T Consensus 21 ~~~t~~Q~~a~~~i----~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEI----HSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHH----hCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 46999999998766 699999999999999999874 5566666652 1 2 57999997555 4466666666
Q ss_pred C--CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh------hcccCCC
Q 000500 356 A--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD------SASLKPI 427 (1460)
Q Consensus 356 ~--P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d------~~~L~~i 427 (1460)
. -++.+-+-||+...... .+.....+||+|||.|++... ...|..+
T Consensus 97 ~~~~G~~v~vRhGDT~~~er--------------------------~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~v 150 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEK--------------------------QKMLKNPPHILITTPESLAILLNSPKFRELLRDV 150 (814)
T ss_pred HHHcCCccceecCCCChHHh--------------------------hhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCC
Confidence 5 25566666665443221 112235789999999998542 4456665
Q ss_pred cceEEEeccccccCCc--chHHHHHHHhc---cc-cceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhh
Q 000500 428 KWQCMIVDEGHRLKNK--DSKLFSSLKQY---ST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ 501 (1460)
Q Consensus 428 ~w~~VIvDEAHrlKN~--~Sk~~~al~~l---~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~ 501 (1460)
+ +|||||.|.+.+. .++++-.|..+ .. -.|++||||= .++.+ ...||.+..-
T Consensus 151 r--~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV--~~~~~---varfL~g~~~--------------- 208 (814)
T COG1201 151 R--YVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATV--GPPEE---VAKFLVGFGD--------------- 208 (814)
T ss_pred c--EEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhcc--CCHHH---HHHHhcCCCC---------------
Confidence 5 4999999999864 35566555544 32 4689999994 23333 3334433210
Q ss_pred HHHHHHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhC
Q 000500 502 EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (1460)
Q Consensus 502 ~~~i~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~ 581 (1460)
+. .-|......+..+.|.++--..
T Consensus 209 ------------~~------~Iv~~~~~k~~~i~v~~p~~~~-------------------------------------- 232 (814)
T COG1201 209 ------------PC------EIVDVSAAKKLEIKVISPVEDL-------------------------------------- 232 (814)
T ss_pred ------------ce------EEEEcccCCcceEEEEecCCcc--------------------------------------
Confidence 00 0000001111111111110000
Q ss_pred CcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcC-CeEEEEecCCCH
Q 000500 582 HPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK-WQYERIDGKVGG 660 (1460)
Q Consensus 582 hP~L~~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g-~~~~ridGs~~~ 660 (1460)
... ..=...+.+.|..+.++...+|||++...+.+.|...|...+ ..+..-+||.+.
T Consensus 233 ------------~~~----------~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSr 290 (814)
T COG1201 233 ------------IYD----------EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSR 290 (814)
T ss_pred ------------ccc----------cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccH
Confidence 000 000112333444555556689999999999999999998876 889999999999
Q ss_pred HHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhh-cccCCCCceEEEEEecCCCHH
Q 000500 661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARA-HRLGQTNKVMIFRLITRGSIE 739 (1460)
Q Consensus 661 ~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRa-hRiGQ~k~V~VyrLvt~~TiE 739 (1460)
+.|..+-++|.++. ...+++|....+||+.-..|.||.|.+|-.-...+||+||+ ||+|....- ++++.+ .+
T Consensus 291 e~R~~vE~~lk~G~---lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg---~ii~~~-r~ 363 (814)
T COG1201 291 ELRLEVEERLKEGE---LKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKG---IIIAED-RD 363 (814)
T ss_pred HHHHHHHHHHhcCC---ceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccE---EEEecC-HH
Confidence 99999999998754 45899999999999999999999999999999999999999 677765443 344544 44
Q ss_pred HHHHHHHHH
Q 000500 740 ERMMQMTKK 748 (1460)
Q Consensus 740 E~I~e~a~~ 748 (1460)
+.+--.+.-
T Consensus 364 dllE~~vi~ 372 (814)
T COG1201 364 DLLECLVLA 372 (814)
T ss_pred HHHHHHHHH
Confidence 444333333
No 63
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=4.9e-16 Score=180.92 Aligned_cols=357 Identities=17% Similarity=0.224 Sum_probs=213.0
Q ss_pred CCCHHHHHHHHHHHHhhh-----cCCcEEEEecCCCCcHHH-HHHHHHHHHhCCCC--cEEEEEcc-ccHHHHHHHHHHH
Q 000500 285 SLHPYQLEGLNFLRFSWS-----KQTHVILADEMGLGKTIQ-SIAFLASLFGERIS--PHLVVAPL-STLRNWEREFATW 355 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~-----~~~~~ILADemGLGKTiq-aIa~l~~L~~~~~~--p~LIVvP~-sll~qW~~E~~kw 355 (1460)
.+.|-|...+-|+..-.. ..+...++..+|+|||+. +|-++..|...... +.|||+|. .+..|-.++|.+|
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 588999999999865443 355678899999999998 45556666555443 88999996 6668899999999
Q ss_pred CCC--CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCC---cce
Q 000500 356 APQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI---KWQ 430 (1460)
Q Consensus 356 ~P~--l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i---~w~ 430 (1460)
++. +-|....|-..-+...++..- .......||+|+|...+......-..| +-.
T Consensus 239 ~~~tgL~V~~~sgq~sl~~E~~qL~~---------------------~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~Lr 297 (620)
T KOG0350|consen 239 NSGTGLAVCSLSGQNSLEDEARQLAS---------------------DPPECRIDILVATPGRLVDHLNNTKSFDLKHLR 297 (620)
T ss_pred ccCCceEEEecccccchHHHHHHHhc---------------------CCCccccceEEcCchHHHHhccCCCCcchhhce
Confidence 976 445555665554444443210 011235699999999998765543333 456
Q ss_pred EEEeccccccCCcc--hHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000500 431 CMIVDEGHRLKNKD--SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1460)
Q Consensus 431 ~VIvDEAHrlKN~~--Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L 508 (1460)
++|||||.||.+.. ..+...+..+....++.+. ..++.+..-..|..++. +
T Consensus 298 fLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~--------~nii~~~~~~~pt~~~e-------------------~ 350 (620)
T KOG0350|consen 298 FLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACL--------DNIIRQRQAPQPTVLSE-------------------L 350 (620)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHhCCchhhcCh--------hhhhhhcccCCchhhHH-------------------H
Confidence 89999999986532 2222222222222222111 11111111011111000 0
Q ss_pred HHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000500 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1460)
Q Consensus 509 ~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~ 588 (1460)
...+ . ....+.++-.+.+.+.+.-.. +..| -.+||.++-.
T Consensus 351 ~t~~------------~------------~~~~~l~kL~~satLsqdP~K--------------l~~l--~l~~Prl~~v 390 (620)
T KOG0350|consen 351 LTKL------------G------------KLYPPLWKLVFSATLSQDPSK--------------LKDL--TLHIPRLFHV 390 (620)
T ss_pred Hhhc------------C------------CcCchhHhhhcchhhhcChHH--------------Hhhh--hcCCCceEEe
Confidence 0000 0 000011111111111111100 1111 1244443322
Q ss_pred CCCCc--cc-chHHHHHHHhhhh--HHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHH----hcCCeEEEEecCCC
Q 000500 589 VEPDI--ED-TNESFKQLLESSG--KLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKWQYERIDGKVG 659 (1460)
Q Consensus 589 ~e~~~--~~-~~~~~~~lv~~Sg--Kl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~----~~g~~~~ridGs~~ 659 (1460)
..+.. .. +...-..++.... |-..+..+|.. ....++|+|+........|...|. .-..++-.++|+.+
T Consensus 391 ~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~ 468 (620)
T KOG0350|consen 391 SKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLN 468 (620)
T ss_pred ecccceeeecChhhhhceeecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhh
Confidence 21100 00 0011111122222 33445555554 357799999999888777777765 34566677999999
Q ss_pred HHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCC
Q 000500 660 GAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1460)
Q Consensus 660 ~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1460)
...|.+.+.+|+.++-. +||++.++++||++...+.||.||++-.-..|++|.||..|-||.- ++|.++...
T Consensus 469 ~k~r~k~l~~f~~g~i~---vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~~ 540 (620)
T KOG0350|consen 469 GKRRYKMLEKFAKGDIN---VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG--YAITLLDKH 540 (620)
T ss_pred HHHHHHHHHHHhcCCce---EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCc--eEEEeeccc
Confidence 99999999999875544 8999999999999999999999999999999999999999999965 445566543
No 64
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=4.8e-15 Score=188.89 Aligned_cols=131 Identities=19% Similarity=0.204 Sum_probs=109.8
Q ss_pred hhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeec
Q 000500 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1460)
Q Consensus 605 ~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlST 684 (1460)
....|+..|..++......|.+|||||......+.|...|...|+++..++|.+...++..+...|.. + .++|+|
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~---g--~VlIAT 483 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK---G--AVTVAT 483 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC---C--eEEEEc
Confidence 34678999999998887889999999999999999999999999999999999887777666665542 2 379999
Q ss_pred cccccccCc---cCCC-----EEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCCHHHHHHHH
Q 000500 685 RAGGLGINL---ATAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 745 (1460)
Q Consensus 685 rAgg~GINL---~~Ad-----~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~ 745 (1460)
..+|.|+|+ +.+. +||.+|.+-|+..+.|+.||++|.|..-.... |+ |.|+.++.+
T Consensus 484 dmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~--~i---s~eD~l~~~ 547 (790)
T PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF--FI---SLEDDLLKR 547 (790)
T ss_pred cchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE--EE---cchHHHHHh
Confidence 999999999 4677 99999999999999999999999998754432 33 346666644
No 65
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.1e-15 Score=167.04 Aligned_cols=312 Identities=18% Similarity=0.258 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHH-HHHHHHHHHhCCC-CcEEEEEccc-cHHHHHHHHHHHCCCC--eEE
Q 000500 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERI-SPHLVVAPLS-TLRNWEREFATWAPQM--NVV 362 (1460)
Q Consensus 288 pyQlegvnwL~~~~~~~~~~ILADemGLGKTiq-aIa~l~~L~~~~~-~p~LIVvP~s-ll~qW~~E~~kw~P~l--~vv 362 (1460)
..|..++--+ .+++++|.....|.|||.+ +|+++..+.-... .-.||+.|.- +-.|-..-+......+ .+.
T Consensus 52 ~IQqrAi~~I----lkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~h 127 (400)
T KOG0328|consen 52 AIQQRAIPQI----LKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCH 127 (400)
T ss_pred HHHhhhhhhh----hcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEE
Confidence 3566666544 6889999999999999987 5666665533322 3789999974 4456666666555444 445
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh--hhcccCCCcceEEEecccccc
Q 000500 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL--DSASLKPIKWQCMIVDEGHRL 440 (1460)
Q Consensus 363 vy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~--d~~~L~~i~w~~VIvDEAHrl 440 (1460)
...|.+.--+-|+..+ ...+||.-|+..+.. ....|+.....++|+|||..+
T Consensus 128 acigg~n~gedikkld--------------------------~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDem 181 (400)
T KOG0328|consen 128 ACIGGKNLGEDIKKLD--------------------------YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEM 181 (400)
T ss_pred EEecCCccchhhhhhc--------------------------ccceEeeCCCchHHHHHHhccccccceeEEEeccHHHH
Confidence 5566665444444322 345788888777654 344566667789999999998
Q ss_pred CC--cchHHHHHHHhcc-ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhhh
Q 000500 441 KN--KDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1460)
Q Consensus 441 KN--~~Sk~~~al~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~L 517 (1460)
.| ...+.+...+.++ ....+++|||- ++|+..+.++..++..
T Consensus 182 L~kgfk~Qiydiyr~lp~~~Qvv~~SATl----p~eilemt~kfmtdpv------------------------------- 226 (400)
T KOG0328|consen 182 LNKGFKEQIYDIYRYLPPGAQVVLVSATL----PHEILEMTEKFMTDPV------------------------------- 226 (400)
T ss_pred HHhhHHHHHHHHHHhCCCCceEEEEeccC----cHHHHHHHHHhcCCce-------------------------------
Confidence 55 4567888888887 55778999995 2343333333333221
Q ss_pred hhhhhhhhhcCCCceeEEEeecCCHHH-HHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcccc
Q 000500 518 RRVKKDVMKELPPKKELILRVELSSKQ-KEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDT 596 (1460)
Q Consensus 518 RR~K~dv~~~LP~k~e~iv~v~Ls~~Q-k~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~~~ 596 (1460)
...+-+-+++-+- +.+|-++-..
T Consensus 227 --------------rilvkrdeltlEgIKqf~v~ve~E------------------------------------------ 250 (400)
T KOG0328|consen 227 --------------RILVKRDELTLEGIKQFFVAVEKE------------------------------------------ 250 (400)
T ss_pred --------------eEEEecCCCchhhhhhheeeechh------------------------------------------
Confidence 1111111222210 1111110000
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCC
Q 000500 597 NESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSS 676 (1460)
Q Consensus 597 ~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~ 676 (1460)
.=|+..|..|-..|- =...+|||+..+..|.|.+.|+...+.+..++|.++.++|.+++.+|+...+.
T Consensus 251 ----------ewKfdtLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~Sr 318 (400)
T KOG0328|consen 251 ----------EWKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSR 318 (400)
T ss_pred ----------hhhHhHHHHHhhhhe--hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCce
Confidence 013333333333321 23689999999999999999999999999999999999999999999887765
Q ss_pred CeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCC
Q 000500 677 RFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (1460)
Q Consensus 677 ~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~T 737 (1460)
+|++|.+-+.||+++..+.||.||.|-|+..|++|+||.+|.|.+- .+..||....
T Consensus 319 ---vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG--vainFVk~~d 374 (400)
T KOG0328|consen 319 ---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKSDD 374 (400)
T ss_pred ---EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcc--eEEEEecHHH
Confidence 8999999999999999999999999999999999999999999754 3346776543
No 66
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.68 E-value=3.5e-16 Score=196.19 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=106.1
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeecc
Q 000500 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1460)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTr 685 (1460)
...|+..+.+.+..+.+.|..|||||..+...+.|..+|...|+++..++|. ..+|+..|..|.. ....++|+|.
T Consensus 387 ~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag---~~g~VtIATn 461 (745)
T TIGR00963 387 EEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAG---RKGAVTIATN 461 (745)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcC---CCceEEEEec
Confidence 3568888888888889999999999999999999999999999999999998 6789999999854 3335899999
Q ss_pred ccccccCccC-------CCEEEEecCCCChhhHHHHHHhhcccCCCCceEE
Q 000500 686 AGGLGINLAT-------ADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1460)
Q Consensus 686 Agg~GINL~~-------Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~V 729 (1460)
.+|+|+++.. .-+||.++.+-|+..+.|+.||++|.|..-....
T Consensus 462 mAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 462 MAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred cccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 9999999987 6699999999999999999999999998865543
No 67
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.68 E-value=8.6e-15 Score=185.68 Aligned_cols=324 Identities=16% Similarity=0.205 Sum_probs=196.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHH----------HHH--h-C-CCCcEEEEEcc-ccH
Q 000500 281 LSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA----------SLF--G-E-RISPHLVVAPL-STL 345 (1460)
Q Consensus 281 ~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~----------~L~--~-~-~~~p~LIVvP~-sll 345 (1460)
+....|++.|...-.-+...+..++..|+..++|+|||.|.=.++. .+. . . ..++++|++|. .+.
T Consensus 156 ~~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa 235 (675)
T PHA02653 156 FSKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALV 235 (675)
T ss_pred cccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHH
Confidence 3346799999888888888889999999999999999987422221 111 1 1 23489999996 555
Q ss_pred HHHHHHHHHHC-----CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh
Q 000500 346 RNWEREFATWA-----PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD 420 (1460)
Q Consensus 346 ~qW~~E~~kw~-----P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d 420 (1460)
.|...++.+.. ++..+.+.+|+..... ... .....+++|.|.....
T Consensus 236 ~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~--~~t-------------------------~~k~~~Ilv~T~~L~l-- 286 (675)
T PHA02653 236 RLHSITLLKSLGFDEIDGSPISLKYGSIPDEL--INT-------------------------NPKPYGLVFSTHKLTL-- 286 (675)
T ss_pred HHHHHHHHHHhCccccCCceEEEEECCcchHH--hhc-------------------------ccCCCCEEEEeCcccc--
Confidence 67777776532 3455666666654210 000 0114578888754211
Q ss_pred hcccCCCcceEEEeccccccCCcchHHHHHHHhccc--cceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhh
Q 000500 421 SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYST--RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD 498 (1460)
Q Consensus 421 ~~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l~~--~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~ 498 (1460)
..| -.+.+||+||||..-.....+...++.+.. +..+++|||.-. ....+ ..|+..
T Consensus 287 -~~L--~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ILmSATl~~-dv~~l---~~~~~~--------------- 344 (675)
T PHA02653 287 -NKL--FDYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRSLFLMTATLED-DRDRI---KEFFPN--------------- 344 (675)
T ss_pred -ccc--ccCCEEEccccccCccchhHHHHHHHHhhhhcCEEEEEccCCcH-hHHHH---HHHhcC---------------
Confidence 122 246789999999986555444444444322 257999999721 11111 112110
Q ss_pred hhhHHHHHHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 000500 499 INQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRK 578 (1460)
Q Consensus 499 ~~~~~~i~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk 578 (1460)
+..+. .. ...+.+.....+.....+.++..|-.
T Consensus 345 ---------------p~~I~-I~---grt~~pV~~~yi~~~~~~~~~~~y~~---------------------------- 377 (675)
T PHA02653 345 ---------------PAFVH-IP---GGTLFPISEVYVKNKYNPKNKRAYIE---------------------------- 377 (675)
T ss_pred ---------------CcEEE-eC---CCcCCCeEEEEeecCcccccchhhhH----------------------------
Confidence 10110 00 00111222222211111111110000
Q ss_pred HhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHH-HHcCceEEEEecchhhHHHHHHHHHhc--CCeEEEEe
Q 000500 579 LCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKL-KEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERID 655 (1460)
Q Consensus 579 ~c~hP~L~~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l-~~~g~KVLIFSq~~~~LdiLed~L~~~--g~~~~rid 655 (1460)
..|..++ ..+..+ ...+.++|||+......+.+...|... ++.+..++
T Consensus 378 ----------------------------~~k~~~l-~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LH 428 (675)
T PHA02653 378 ----------------------------EEKKNIV-TALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIH 428 (675)
T ss_pred ----------------------------HHHHHHH-HHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEecc
Confidence 0011111 111111 124568999999999999999999876 79999999
Q ss_pred cCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEec----CC--------CChhhHHHHHHhhcccCC
Q 000500 656 GKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYD----SD--------WNPHADLQAMARAHRLGQ 723 (1460)
Q Consensus 656 Gs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D----sd--------WNP~~d~QAigRahRiGQ 723 (1460)
|+++.. ++++++|.. +++..+|++|..++.||+++.+++||-++ |. .+...+.||.||++|.
T Consensus 429 G~Lsq~--eq~l~~ff~--~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-- 502 (675)
T PHA02653 429 GKVPNI--DEILEKVYS--SKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-- 502 (675)
T ss_pred CCcCHH--HHHHHHHhc--cCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC--
Confidence 999864 567778742 24556899999999999999999999987 21 2666788999999887
Q ss_pred CCceEEEEEecCCCH
Q 000500 724 TNKVMIFRLITRGSI 738 (1460)
Q Consensus 724 ~k~V~VyrLvt~~Ti 738 (1460)
++-.+|+|+++...
T Consensus 503 -~~G~c~rLyt~~~~ 516 (675)
T PHA02653 503 -SPGTYVYFYDLDLL 516 (675)
T ss_pred -CCCeEEEEECHHHh
Confidence 46888999988764
No 68
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.67 E-value=4.8e-15 Score=182.04 Aligned_cols=306 Identities=20% Similarity=0.212 Sum_probs=211.8
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEE
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P~l~vv 362 (1460)
..+||-|.+++..+ ..++++|.-..+|-||++..- |-.+.. .|.+|||.|+ ||+..-.+.+..-. +.+.
T Consensus 16 ~~FR~gQ~evI~~~----l~g~d~lvvmPTGgGKSlCyQ--iPAll~--~G~TLVVSPLiSLM~DQV~~l~~~G--i~A~ 85 (590)
T COG0514 16 ASFRPGQQEIIDAL----LSGKDTLVVMPTGGGKSLCYQ--IPALLL--EGLTLVVSPLISLMKDQVDQLEAAG--IRAA 85 (590)
T ss_pred cccCCCHHHHHHHH----HcCCcEEEEccCCCCcchHhh--hHHHhc--CCCEEEECchHHHHHHHHHHHHHcC--ceee
Confidence 35888999998877 677999999999999998642 222222 4599999995 88888888888754 5555
Q ss_pred EEEcC--hhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hcccCCCcceEEEecccc
Q 000500 363 MYVGT--SQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGH 438 (1460)
Q Consensus 363 vy~G~--~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d--~~~L~~i~w~~VIvDEAH 438 (1460)
.+.++ ...+..+... ......+++..++|.+... ...|...+..+++|||||
T Consensus 86 ~lnS~l~~~e~~~v~~~------------------------l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAH 141 (590)
T COG0514 86 YLNSTLSREERQQVLNQ------------------------LKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAH 141 (590)
T ss_pred hhhcccCHHHHHHHHHH------------------------HhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHH
Confidence 44443 2223222211 1124578999999998764 455677889999999999
Q ss_pred ccCCcc-------hHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHh
Q 000500 439 RLKNKD-------SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1460)
Q Consensus 439 rlKN~~-------Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~ 511 (1460)
.+.... ..+......+....++.||||--.--..|+-..|..-.+..|...
T Consensus 142 CiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s---------------------- 199 (590)
T COG0514 142 CISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGS---------------------- 199 (590)
T ss_pred HHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec----------------------
Confidence 986543 345555555565678999888643444444444433322221100
Q ss_pred hchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000500 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1460)
Q Consensus 512 L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~ 591 (1460)
+ .+. |+..+.+..
T Consensus 200 --------------------------f--------------------------dRp---Ni~~~v~~~------------ 212 (590)
T COG0514 200 --------------------------F--------------------------DRP---NLALKVVEK------------ 212 (590)
T ss_pred --------------------------C--------------------------CCc---hhhhhhhhc------------
Confidence 0 000 000000000
Q ss_pred CcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHh
Q 000500 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1460)
Q Consensus 592 ~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn 671 (1460)
.+.-.++.+|.. .....+..-||||......+.|...|...|++...++|+++.++|+..-++|+
T Consensus 213 ------------~~~~~q~~fi~~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~ 277 (590)
T COG0514 213 ------------GEPSDQLAFLAT---VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFL 277 (590)
T ss_pred ------------ccHHHHHHHHHh---hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHh
Confidence 000001111221 12233456899999999999999999999999999999999999999999998
Q ss_pred ccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEE
Q 000500 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1460)
Q Consensus 672 ~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~Vy 730 (1460)
.++. .++++|.|.|.|||=++...||+||.|-+...|.|-+|||+|-|....+.++
T Consensus 278 ~~~~---~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill 333 (590)
T COG0514 278 NDEI---KVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILL 333 (590)
T ss_pred cCCC---cEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEe
Confidence 7544 4899999999999999999999999999999999999999999987766543
No 69
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=6.2e-15 Score=184.32 Aligned_cols=131 Identities=18% Similarity=0.226 Sum_probs=106.1
Q ss_pred hhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeec
Q 000500 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1460)
Q Consensus 605 ~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlST 684 (1460)
....|...|.+++..+...|..||||+..+...+.|...|...|+++..|+|... +|+..+..|.... + .++|+|
T Consensus 454 t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~-g--~VlVAT 528 (656)
T PRK12898 454 TAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQR-G--RITVAT 528 (656)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCC-C--cEEEEc
Confidence 3466899999999988878899999999999999999999999999999999864 5556666664322 2 389999
Q ss_pred cccccccCcc---CCC-----EEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCCHHHHHHHH
Q 000500 685 RAGGLGINLA---TAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 745 (1460)
Q Consensus 685 rAgg~GINL~---~Ad-----~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~ 745 (1460)
..+|.|+|+. .+. +||.||.+-|...|.|++||++|.|..-.+. .|+ |.|+.++.+
T Consensus 529 dmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~--~~i---s~eD~l~~~ 592 (656)
T PRK12898 529 NMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYE--AIL---SLEDDLLQS 592 (656)
T ss_pred cchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEE--EEe---chhHHHHHh
Confidence 9999999998 443 9999999999999999999999999764443 333 345555544
No 70
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.66 E-value=9.1e-15 Score=195.89 Aligned_cols=96 Identities=18% Similarity=0.256 Sum_probs=84.1
Q ss_pred cCceEEEEecchhhHHHHHHHHHhcC---------------------------------CeEEEEecCCCHHHHHHHHHH
Q 000500 623 QGHRVLIYSQFQHMLDLLEDYLTFKK---------------------------------WQYERIDGKVGGAERQIRIDR 669 (1460)
Q Consensus 623 ~g~KVLIFSq~~~~LdiLed~L~~~g---------------------------------~~~~ridGs~~~~eRq~~Id~ 669 (1460)
.+.++|||++.....+.|...|+... +....++|+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 46799999999999999888886431 124567899999999999999
Q ss_pred HhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhccc
Q 000500 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1460)
Q Consensus 670 Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRi 721 (1460)
|.++ ...+|++|.+++.|||+..+|+||.|+++.+...++|++||++|.
T Consensus 323 fK~G---~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSG---ELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhC---CceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9764 445899999999999999999999999999999999999999985
No 71
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.66 E-value=4.4e-15 Score=183.30 Aligned_cols=354 Identities=17% Similarity=0.203 Sum_probs=219.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCC-cEEEEecCCCCcHHHHHHHHHHHHhCC-CCcEEEEEc-cccHHHHHHHHHHHCCC
Q 000500 282 SGGSLHPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWEREFATWAPQ 358 (1460)
Q Consensus 282 ~g~~LrpyQlegvnwL~~~~~~~~-~~ILADemGLGKTiqaIa~l~~L~~~~-~~p~LIVvP-~sll~qW~~E~~kw~P~ 358 (1460)
....+|+||..+++.+...+.++. .++|++.+|+|||.+||+++..|...+ .+++|.++- ++++.|-...|..+.|+
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCC
Confidence 346799999999999988887765 588999999999999999999998764 569999999 68889999999999998
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc-------ccCCCcceE
Q 000500 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-------SLKPIKWQC 431 (1460)
Q Consensus 359 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~-------~L~~i~w~~ 431 (1460)
...+.+..... ....+.|.|.||.++..... .+..-.|++
T Consensus 242 ~~~~n~i~~~~---------------------------------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDl 288 (875)
T COG4096 242 GTKMNKIEDKK---------------------------------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDL 288 (875)
T ss_pred ccceeeeeccc---------------------------------CCcceeEEEeehHHHHhhhhccccccccCCCCceeE
Confidence 76665543221 11257899999999976432 233335999
Q ss_pred EEeccccccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHh
Q 000500 432 MIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1460)
Q Consensus 432 VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~ 511 (1460)
||||||||-- .+.++.+..+-...+++|||||-..--..-|.+++ +.
T Consensus 289 IvIDEaHRgi---~~~~~~I~dYFdA~~~gLTATP~~~~d~~T~~~F~-------g~----------------------- 335 (875)
T COG4096 289 IVIDEAHRGI---YSEWSSILDYFDAATQGLTATPKETIDRSTYGFFN-------GE----------------------- 335 (875)
T ss_pred EEechhhhhH---HhhhHHHHHHHHHHHHhhccCcccccccccccccC-------CC-----------------------
Confidence 9999999831 22233455555566778899995421111111111 00
Q ss_pred hchhhhhhhhhhhhh-cCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCC
Q 000500 512 LAPHLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1460)
Q Consensus 512 L~p~~LRR~K~dv~~-~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e 590 (1460)
|....-.+.-|.. .|-|+....+.+...- +=-.|....++ ..+. .+. ++.
T Consensus 336 --Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~-~G~~~~~~ser--ek~~----------------g~~------i~~-- 386 (875)
T COG4096 336 --PTYAYSLEEAVEDGFLVPYKVIRIDTDFDL-DGWKPDAGSER--EKLQ----------------GEA------IDE-- 386 (875)
T ss_pred --cceeecHHHHhhccccCCCCceEEeeeccc-cCcCcCccchh--hhhh----------------ccc------cCc--
Confidence 0000001111111 1222222222222110 00001111000 0000 000 000
Q ss_pred CCcccchHHHHHHHhhhhHHHHHHHHHHHHHHc---C---ceEEEEecchhhHHHHHHHHHhc-----CCeEEEEecCCC
Q 000500 591 PDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQ---G---HRVLIYSQFQHMLDLLEDYLTFK-----KWQYERIDGKVG 659 (1460)
Q Consensus 591 ~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~---g---~KVLIFSq~~~~LdiLed~L~~~-----g~~~~ridGs~~ 659 (1460)
++.......+..-+........+.+.|.....+ | .|.||||......+.|...|... |--+..|+|...
T Consensus 387 dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~ 466 (875)
T COG4096 387 DDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE 466 (875)
T ss_pred ccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch
Confidence 000000000011111222334455555555444 3 49999999999999999988653 333567888764
Q ss_pred HHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccC-------CCC-ceEEEE
Q 000500 660 GAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG-------QTN-KVMIFR 731 (1460)
Q Consensus 660 ~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiG-------Q~k-~V~Vyr 731 (1460)
+-+..|+.|-. +...-.+.+|...+..|||.+.+-.++|+-.-.+-..+.|.+||+-|+- |.| ...||.
T Consensus 467 --~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifD 543 (875)
T COG4096 467 --QAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFD 543 (875)
T ss_pred --hhHHHHHHHHh-cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEE
Confidence 44678899976 3333457899999999999999999999999999999999999999963 444 466777
Q ss_pred Ee
Q 000500 732 LI 733 (1460)
Q Consensus 732 Lv 733 (1460)
++
T Consensus 544 f~ 545 (875)
T COG4096 544 FV 545 (875)
T ss_pred hh
Confidence 66
No 72
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.66 E-value=1.7e-14 Score=167.35 Aligned_cols=317 Identities=18% Similarity=0.296 Sum_probs=216.1
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHH-hC-C---CC--cEEEEEccccH-HH---HHHHH
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GE-R---IS--PHLVVAPLSTL-RN---WEREF 352 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~-~~-~---~~--p~LIVvP~sll-~q---W~~E~ 352 (1460)
..+.|-|..++-.+ .+++.++.-..+|+|||+..+.-+..+. .. . ++ -.|||.|.--| .| -...|
T Consensus 27 ~~mTpVQa~tIPll----l~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLL----LKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHH----hcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 46889999998877 6889999999999999988665555444 22 1 12 45999997443 33 34445
Q ss_pred HHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----hcccCCCc
Q 000500 353 ATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIK 428 (1460)
Q Consensus 353 ~kw~P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d----~~~L~~i~ 428 (1460)
..+.|++++.++.|...-.+-+..+. ....+|+|.|+..+... ...+..-.
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~Di~~fk-------------------------ee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEEDIKTFK-------------------------EEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred HHhhhccceEEEecCccHHHHHHHHH-------------------------HhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 55678999999999976665554431 23567999999877543 33344345
Q ss_pred ceEEEeccccccCCc--chHHHHHHHhccccceEe-eccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHH
Q 000500 429 WQCMIVDEGHRLKNK--DSKLFSSLKQYSTRHRVL-LTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (1460)
Q Consensus 429 w~~VIvDEAHrlKN~--~Sk~~~al~~l~~~~rLL-LTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i 505 (1460)
-.++|+|||.|+-.. ...+...|..+..++|-+ .|||-- ..+
T Consensus 158 Le~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~-----------------------------------~~v 202 (567)
T KOG0345|consen 158 LEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQT-----------------------------------QEV 202 (567)
T ss_pred cceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhh-----------------------------------HHH
Confidence 678999999999654 355667777777777754 466631 111
Q ss_pred HHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccc
Q 000500 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1460)
Q Consensus 506 ~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L 585 (1460)
..|.. .-||. .....|...- ......++.+ -|
T Consensus 203 ~dL~r----aGLRN-----------pv~V~V~~k~---------------------~~~tPS~L~~-----------~Y- 234 (567)
T KOG0345|consen 203 EDLAR----AGLRN-----------PVRVSVKEKS---------------------KSATPSSLAL-----------EY- 234 (567)
T ss_pred HHHHH----hhccC-----------ceeeeecccc---------------------cccCchhhcc-----------ee-
Confidence 11110 01110 0011110000 0000000000 00
Q ss_pred ccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHh--cCCeEEEEecCCCHHHH
Q 000500 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGGAER 663 (1460)
Q Consensus 586 ~~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~--~g~~~~ridGs~~~~eR 663 (1460)
..+.+.-|+..|..+|.. ...+|+|||-..-...++....|.. .+.+++-|+|.++...|
T Consensus 235 ----------------~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R 296 (567)
T KOG0345|consen 235 ----------------LVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKAR 296 (567)
T ss_pred ----------------eEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhH
Confidence 012244577778888876 3467999998888887777776654 57899999999999999
Q ss_pred HHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEe
Q 000500 664 QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 733 (1460)
Q Consensus 664 q~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLv 733 (1460)
..++..|.+..++ +|++|.+++.||+++..|.||.||||-+|..+.+|.||..|.|..-...||-+-
T Consensus 297 ~k~~~~F~~~~~~---vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p 363 (567)
T KOG0345|consen 297 AKVLEAFRKLSNG---VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNP 363 (567)
T ss_pred HHHHHHHHhccCc---eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecc
Confidence 9999999884444 799999999999999999999999999999999999999999988776665443
No 73
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.63 E-value=5.1e-14 Score=168.79 Aligned_cols=85 Identities=24% Similarity=0.292 Sum_probs=71.8
Q ss_pred cCceEEEEecchhhHHHHHHHHHhcC--CeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEE
Q 000500 623 QGHRVLIYSQFQHMLDLLEDYLTFKK--WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1460)
Q Consensus 623 ~g~KVLIFSq~~~~LdiLed~L~~~g--~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VI 700 (1460)
.+.|+|||++.....+.+...|...| +.+..++|.++..+|.++. ...+|++|.+++.|||+.. +.||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~---------~~~iLVaTdv~~rGiDi~~-~~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM---------QFDILLGTSTVDVGVDFKR-DWLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc---------cCCEEEEecHHhcccCCCC-ceEE
Confidence 57899999999999999999998764 5788999999999887653 3358999999999999985 4666
Q ss_pred EecCCCChhhHHHHHHhhc
Q 000500 701 IYDSDWNPHADLQAMARAH 719 (1460)
Q Consensus 701 i~DsdWNP~~d~QAigRah 719 (1460)
++ +-++..++||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 56 568899999999974
No 74
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.63 E-value=2.9e-14 Score=174.62 Aligned_cols=305 Identities=17% Similarity=0.282 Sum_probs=202.4
Q ss_pred CCCCHHHHHHHHHHHHhhhcCC--cEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccH-HHHHHHHHHHCC--C
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAP--Q 358 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~--~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll-~qW~~E~~kw~P--~ 358 (1460)
.+|...|..+++-+..-..... +-+|--++|+|||+.|+..+......+ .-..+++|..+| .|-.+.+.+|++ +
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G-~Q~ALMAPTEILA~QH~~~~~~~l~~~~ 339 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG-YQAALMAPTEILAEQHYESLRKWLEPLG 339 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC-CeeEEeccHHHHHHHHHHHHHHHhhhcC
Confidence 5688899999988755444433 457888999999999876666655544 367889998777 678889999997 5
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEecccc
Q 000500 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1460)
Q Consensus 359 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEAH 438 (1460)
+.|....|+-.....-...+ ....+..++||-|+..+.....+- +..+||+||=|
T Consensus 340 i~V~lLtG~~kgk~r~~~l~----------------------~l~~G~~~ivVGTHALiQd~V~F~---~LgLVIiDEQH 394 (677)
T COG1200 340 IRVALLTGSLKGKARKEILE----------------------QLASGEIDIVVGTHALIQDKVEFH---NLGLVIIDEQH 394 (677)
T ss_pred CeEEEeecccchhHHHHHHH----------------------HHhCCCCCEEEEcchhhhcceeec---ceeEEEEeccc
Confidence 77788888755433211111 112356789999999886543332 45799999999
Q ss_pred ccCCcchHHHHHHHhcc--ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhh
Q 000500 439 RLKNKDSKLFSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (1460)
Q Consensus 439 rlKN~~Sk~~~al~~l~--~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~ 516 (1460)
|+.- .....|+.-. ..|.|.|||||+.-++.= ..|+++..
T Consensus 395 RFGV---~QR~~L~~KG~~~Ph~LvMTATPIPRTLAl--------------------t~fgDldv--------------- 436 (677)
T COG1200 395 RFGV---HQRLALREKGEQNPHVLVMTATPIPRTLAL--------------------TAFGDLDV--------------- 436 (677)
T ss_pred cccH---HHHHHHHHhCCCCCcEEEEeCCCchHHHHH--------------------HHhccccc---------------
Confidence 9853 3334444432 479999999998766421 11222111
Q ss_pred hhhhhhhhhhcCCCceeEEEeecCC-HHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCccc
Q 000500 517 LRRVKKDVMKELPPKKELILRVELS-SKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (1460)
Q Consensus 517 LRR~K~dv~~~LP~k~e~iv~v~Ls-~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~~ 595 (1460)
.+.+.+|+..--+...-+. ..-.++|+.|.
T Consensus 437 ------S~IdElP~GRkpI~T~~i~~~~~~~v~e~i~------------------------------------------- 467 (677)
T COG1200 437 ------SIIDELPPGRKPITTVVIPHERRPEVYERIR------------------------------------------- 467 (677)
T ss_pred ------hhhccCCCCCCceEEEEeccccHHHHHHHHH-------------------------------------------
Confidence 1234678763332222222 11122333221
Q ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhh--------HHHHHHHHH--hcCCeEEEEecCCCHHHHHH
Q 000500 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM--------LDLLEDYLT--FKKWQYERIDGKVGGAERQI 665 (1460)
Q Consensus 596 ~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~--------LdiLed~L~--~~g~~~~ridGs~~~~eRq~ 665 (1460)
+-...|+++.+.|.-+.. ...+...|. ..++++..++|.++++++++
T Consensus 468 -----------------------~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~ 524 (677)
T COG1200 468 -----------------------EEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDA 524 (677)
T ss_pred -----------------------HHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHH
Confidence 111245555555544322 122223332 23678999999999999999
Q ss_pred HHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCC-CChhhHHHHHHhhcccCCCCce
Q 000500 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKV 727 (1460)
Q Consensus 666 ~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~Dsd-WNP~~d~QAigRahRiGQ~k~V 727 (1460)
++.+|+++..+ +|+||.+..+|||++.|+.+||++.. +--++.-|--||++|=+...-|
T Consensus 525 vM~~Fk~~e~~---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC 584 (677)
T COG1200 525 VMEAFKEGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYC 584 (677)
T ss_pred HHHHHHcCCCc---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEE
Confidence 99999875554 89999999999999999999999997 7788999999999996554433
No 75
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.63 E-value=1.8e-14 Score=171.47 Aligned_cols=313 Identities=18% Similarity=0.263 Sum_probs=203.8
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHH-HHHHHHHhCCC-----------CcEEEEEcc-ccHHHHHH
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERI-----------SPHLVVAPL-STLRNWER 350 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~L~~~~~-----------~p~LIVvP~-sll~qW~~ 350 (1460)
..+.|+|.-++.-+ ..+++.+.+..+|+|||..-+ -++.+++..+. ...||++|+ .+..|-..
T Consensus 95 ~~ptpvQk~sip~i----~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~n 170 (482)
T KOG0335|consen 95 TKPTPVQKYSIPII----SGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYN 170 (482)
T ss_pred cCCCcceeecccee----ecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHH
Confidence 34678898887755 788999999999999998753 45556655422 257999996 77789999
Q ss_pred HHHHHC--CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCC
Q 000500 351 EFATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKP 426 (1460)
Q Consensus 351 E~~kw~--P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~--~~L~~ 426 (1460)
|..++. ..+++++.+|....+..++.. ...+|++++|...+..-. ..+..
T Consensus 171 ea~k~~~~s~~~~~~~ygg~~~~~q~~~~--------------------------~~gcdIlvaTpGrL~d~~e~g~i~l 224 (482)
T KOG0335|consen 171 EARKFSYLSGMKSVVVYGGTDLGAQLRFI--------------------------KRGCDILVATPGRLKDLIERGKISL 224 (482)
T ss_pred HHHhhcccccceeeeeeCCcchhhhhhhh--------------------------ccCccEEEecCchhhhhhhcceeeh
Confidence 999886 346666666665555443331 247899999999876432 11211
Q ss_pred CcceEEEeccccccCCc---chHHHHHHHhcc-----ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhh
Q 000500 427 IKWQCMIVDEGHRLKNK---DSKLFSSLKQYS-----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD 498 (1460)
Q Consensus 427 i~w~~VIvDEAHrlKN~---~Sk~~~al~~l~-----~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~ 498 (1460)
-...++|+|||.++-.. ...+.+.+.... ...-++.|||- +
T Consensus 225 ~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtf--------------------p----------- 273 (482)
T KOG0335|consen 225 DNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATF--------------------P----------- 273 (482)
T ss_pred hhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccC--------------------C-----------
Confidence 22348999999987542 112222222221 12335555552 0
Q ss_pred hhhHHHHHHHHH-hhch-hhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Q 000500 499 INQEEQISRLHR-MLAP-HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMEL 576 (1460)
Q Consensus 499 ~~~~~~i~~L~~-~L~p-~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~L 576 (1460)
..++++.. .+.. |+.-+ -.-+...-......+++|.
T Consensus 274 ----~~iq~l~~~fl~~~yi~la-V~rvg~~~~ni~q~i~~V~------------------------------------- 311 (482)
T KOG0335|consen 274 ----KEIQRLAADFLKDNYIFLA-VGRVGSTSENITQKILFVN------------------------------------- 311 (482)
T ss_pred ----hhhhhhHHHHhhccceEEE-EeeeccccccceeEeeeec-------------------------------------
Confidence 01111000 0000 00000 0000000111111122221
Q ss_pred HHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHH---Hc----CceEEEEecchhhHHHHHHHHHhcCC
Q 000500 577 RKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK---EQ----GHRVLIYSQFQHMLDLLEDYLTFKKW 649 (1460)
Q Consensus 577 Rk~c~hP~L~~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~---~~----g~KVLIFSq~~~~LdiLed~L~~~g~ 649 (1460)
...|...|.++|.... .. -++++||+.-.++++.|+.+|...|+
T Consensus 312 -----------------------------~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~ 362 (482)
T KOG0335|consen 312 -----------------------------EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGY 362 (482)
T ss_pred -----------------------------chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCC
Confidence 1223333333333322 11 25899999999999999999999999
Q ss_pred eEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEE
Q 000500 650 QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1460)
Q Consensus 650 ~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~V 729 (1460)
++.-|+|..+..+|.++++.|...... +||+|..++.|||++.+.+||+||.+-+-..|+.|+||.+|.|+.-..+.
T Consensus 363 ~~~sIhg~~tq~er~~al~~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~ats 439 (482)
T KOG0335|consen 363 PAKSIHGDRTQIEREQALNDFRNGKAP---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATS 439 (482)
T ss_pred CceeecchhhhhHHHHHHHHhhcCCcc---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEE
Confidence 999999999999999999999775444 89999999999999999999999999999999999999999999876665
Q ss_pred EE
Q 000500 730 FR 731 (1460)
Q Consensus 730 yr 731 (1460)
|.
T Consensus 440 f~ 441 (482)
T KOG0335|consen 440 FF 441 (482)
T ss_pred Ee
Confidence 43
No 76
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.63 E-value=1.4e-14 Score=169.49 Aligned_cols=339 Identities=17% Similarity=0.240 Sum_probs=210.5
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHH-HHHHHHHHh---------CCCC-cEEEEEccc-cHHHHHHHH
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFG---------ERIS-PHLVVAPLS-TLRNWEREF 352 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~L~~---------~~~~-p~LIVvP~s-ll~qW~~E~ 352 (1460)
...|.|..++--+ ..+++.|...|+|+|||... |-++.++.. ..-+ ..+|++|+- +..|-..|-
T Consensus 267 eptpIqR~aipl~----lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 267 EPTPIQRQAIPLG----LQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred CCchHHHhhccch----hccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 3667888887644 67889999999999999442 223322221 1123 468999974 456677777
Q ss_pred HHHCC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hcccCCCc
Q 000500 353 ATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIK 428 (1460)
Q Consensus 353 ~kw~P--~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d--~~~L~~i~ 428 (1460)
.+|+- .++++...|...--.. .| .-...++|+|.|+..+..- ...|-.-.
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq----~f----------------------qls~gceiviatPgrLid~Lenr~lvl~q 396 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQ----GF----------------------QLSMGCEIVIATPGRLIDSLENRYLVLNQ 396 (673)
T ss_pred HHhcccccceEEEEecccchhhh----hh----------------------hhhccceeeecCchHHHHHHHHHHHHhcc
Confidence 77762 3667777776432111 11 0124578999999877542 22233334
Q ss_pred ceEEEeccccccCCcc--hHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHH
Q 000500 429 WQCMIVDEGHRLKNKD--SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQIS 506 (1460)
Q Consensus 429 w~~VIvDEAHrlKN~~--Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~ 506 (1460)
..+||+|||.++-... -.....|..+ |..|- .| +.+++ +...
T Consensus 397 ctyvvldeadrmiDmgfE~dv~~iL~~m-----------Pssn~-----------k~----~tde~----------~~~~ 440 (673)
T KOG0333|consen 397 CTYVVLDEADRMIDMGFEPDVQKILEQM-----------PSSNA-----------KP----DTDEK----------EGEE 440 (673)
T ss_pred CceEeccchhhhhcccccHHHHHHHHhC-----------Ccccc-----------CC----Cccch----------hhHH
Confidence 5789999999874322 2222222222 21111 00 11111 1111
Q ss_pred HHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccc
Q 000500 507 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1460)
Q Consensus 507 ~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~ 586 (1460)
++.+.+.. .| --.......+.|++.-..+-+..+. .|..+
T Consensus 441 ~~~~~~~~-----~k-------~yrqT~mftatm~p~verlar~ylr----------------------------~pv~v 480 (673)
T KOG0333|consen 441 RVRKNFSS-----SK-------KYRQTVMFTATMPPAVERLARSYLR----------------------------RPVVV 480 (673)
T ss_pred HHHhhccc-----cc-------ceeEEEEEecCCChHHHHHHHHHhh----------------------------CCeEE
Confidence 11111100 00 0011223445555543333333222 12111
Q ss_pred c-CCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Q 000500 587 E-GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1460)
Q Consensus 587 ~-~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~ 665 (1460)
. +.........+..-.++..+.|...|.++|... ....+|||.+.....|.|++.|.+.||++++++|+-+.++|+.
T Consensus 481 tig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~ 558 (673)
T KOG0333|consen 481 TIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQREN 558 (673)
T ss_pred EeccCCCCccchheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHH
Confidence 1 111111111111112345667877777777764 3579999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCC
Q 000500 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1460)
Q Consensus 666 ~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1460)
++..|.++..+ +|++|.++|.||+++.+++||.||..-+-..|.++|||.+|-|+.-.+. -|+|..
T Consensus 559 aL~~fr~~t~d---IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gtai--Sflt~~ 624 (673)
T KOG0333|consen 559 ALADFREGTGD---ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAI--SFLTPA 624 (673)
T ss_pred HHHHHHhcCCC---EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeE--EEeccc
Confidence 99999987666 8999999999999999999999999999999999999999999876554 355543
No 77
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.62 E-value=1.2e-14 Score=169.82 Aligned_cols=308 Identities=19% Similarity=0.276 Sum_probs=202.9
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHH-HhC----CCC-cEEEEEccc-cHHHHHHH---HH
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL-FGE----RIS-PHLVVAPLS-TLRNWERE---FA 353 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L-~~~----~~~-p~LIVvP~s-ll~qW~~E---~~ 353 (1460)
.+|.+-|...+.-+ ..+..++.+.-+|+|||+..+.-+..+ +.. ..+ -+|||||.- +-.|-..| +.
T Consensus 103 ~~MT~VQ~~ti~pl----l~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll 178 (543)
T KOG0342|consen 103 ETMTPVQQKTIPPL----LEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELL 178 (543)
T ss_pred cchhHHHHhhcCcc----CCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHH
Confidence 35788888777655 577899999999999998754333333 222 122 679999974 44555444 45
Q ss_pred HHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCC---Ccce
Q 000500 354 TWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKP---IKWQ 430 (1460)
Q Consensus 354 kw~P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~---i~w~ 430 (1460)
++.+...+.+..|...-+...... . ...+++|.|+..+......-.. -.-.
T Consensus 179 ~~h~~~~v~~viGG~~~~~e~~kl-------------------------~-k~~niliATPGRLlDHlqNt~~f~~r~~k 232 (543)
T KOG0342|consen 179 KYHESITVGIVIGGNNFSVEADKL-------------------------V-KGCNILIATPGRLLDHLQNTSGFLFRNLK 232 (543)
T ss_pred hhCCCcceEEEeCCccchHHHHHh-------------------------h-ccccEEEeCCchHHhHhhcCCcchhhccc
Confidence 556677777777766544322221 1 2568999999988654322211 1236
Q ss_pred EEEeccccccCCcc--hHHHHHHHhccc-cceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHH
Q 000500 431 CMIVDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1460)
Q Consensus 431 ~VIvDEAHrlKN~~--Sk~~~al~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~ 507 (1460)
++|+|||.||-... --+-+.+..+.. ...+|.|||-
T Consensus 233 ~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~----------------------------------------- 271 (543)
T KOG0342|consen 233 CLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQ----------------------------------------- 271 (543)
T ss_pred eeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCC-----------------------------------------
Confidence 89999999985322 223333333432 2336666662
Q ss_pred HHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccccc
Q 000500 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (1460)
Q Consensus 508 L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~ 587 (1460)
++.-+++.+-++.+ .|-.++
T Consensus 272 ---------------------------------~~kV~~l~~~~L~~---------------------------d~~~v~ 291 (543)
T KOG0342|consen 272 ---------------------------------PSKVKDLARGALKR---------------------------DPVFVN 291 (543)
T ss_pred ---------------------------------cHHHHHHHHHhhcC---------------------------CceEee
Confidence 11111111111000 000011
Q ss_pred CCCCCcccchHHHHH---HHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHH
Q 000500 588 GVEPDIEDTNESFKQ---LLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ 664 (1460)
Q Consensus 588 ~~e~~~~~~~~~~~~---lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq 664 (1460)
........+.+.+.+ +.....++.+|..+|++.... .||+||+....+...+.+.|....+++.-|+|..++..|.
T Consensus 292 ~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT 370 (543)
T KOG0342|consen 292 VDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRT 370 (543)
T ss_pred cCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccc
Confidence 111111111111111 111233567777888876544 8999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCc
Q 000500 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNK 726 (1460)
Q Consensus 665 ~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~ 726 (1460)
.+..+|.+..++ +|++|.++++|+|.+.+|.||-||++-+|.+|++|+||..|-|-+-.
T Consensus 371 ~~~~~F~kaesg---IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 371 STFFEFCKAESG---ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred hHHHHHhhcccc---eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCce
Confidence 999999998887 89999999999999999999999999999999999999999776543
No 78
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.62 E-value=4.1e-15 Score=167.78 Aligned_cols=320 Identities=18% Similarity=0.298 Sum_probs=209.6
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHH-HHHHHHHH--------hCCCCcE-EEEEccccH-HHHHHHHH
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLF--------GERISPH-LVVAPLSTL-RNWEREFA 353 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~L~--------~~~~~p~-LIVvP~sll-~qW~~E~~ 353 (1460)
...|.|+.|+--+ -.|+..|=..=+|+|||++. +-++...+ ..+-+|+ |||||.--+ .|-..-+.
T Consensus 192 ~PTpIQvQGlPvv----LsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 192 HPTPIQVQGLPVV----LSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred CCCceeecCcceE----eecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 4667898887654 46777776677999999763 22222222 1234565 999997444 44433333
Q ss_pred HH--------CCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cc
Q 000500 354 TW--------APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--AS 423 (1460)
Q Consensus 354 kw--------~P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~--~~ 423 (1460)
.+ .|.++.....|.-.-+..+... ....|+++.|...+.... ..
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v--------------------------~~GvHivVATPGRL~DmL~KK~ 321 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQLDVV--------------------------RRGVHIVVATPGRLMDMLAKKI 321 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHHHHH--------------------------hcCeeEEEcCcchHHHHHHHhh
Confidence 33 2667777777776666554331 135689999998775421 11
Q ss_pred cCCCcceEEEeccccccCCcc--hHHHHHHHhcccc-ceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh
Q 000500 424 LKPIKWQCMIVDEGHRLKNKD--SKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN 500 (1460)
Q Consensus 424 L~~i~w~~VIvDEAHrlKN~~--Sk~~~al~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~ 500 (1460)
+.---..++.+|||.|+-... ......+..|++. ..||.|||- |.. ...|.
T Consensus 322 ~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATM----------------P~K-------IQ~FA--- 375 (610)
T KOG0341|consen 322 MSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATM----------------PKK-------IQNFA--- 375 (610)
T ss_pred ccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccc----------------cHH-------HHHHH---
Confidence 111124579999999985432 2333333444443 457788873 100 00010
Q ss_pred hHHHHHHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHh
Q 000500 501 QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLC 580 (1460)
Q Consensus 501 ~~~~i~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c 580 (1460)
-..+++| .+|.|. .....-++++.+
T Consensus 376 -------kSALVKP-------------------vtvNVG------------------------RAGAAsldViQe----- 400 (610)
T KOG0341|consen 376 -------KSALVKP-------------------VTVNVG------------------------RAGAASLDVIQE----- 400 (610)
T ss_pred -------Hhhcccc-------------------eEEecc------------------------cccccchhHHHH-----
Confidence 0011111 122211 111112222222
Q ss_pred CCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCH
Q 000500 581 CHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGG 660 (1460)
Q Consensus 581 ~hP~L~~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~ 660 (1460)
-..+..-+|+..|.+.|++ ..-+||||+.-..-.|-|.+||-.+|+..+.|+|+-..
T Consensus 401 --------------------vEyVkqEaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQ 457 (610)
T KOG0341|consen 401 --------------------VEYVKQEAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQ 457 (610)
T ss_pred --------------------HHHHHhhhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHccceeEEeecCcch
Confidence 2234556677777766665 56689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCCHHH
Q 000500 661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1460)
Q Consensus 661 ~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE 740 (1460)
++|..+|+.|..+..+ +|++|.+++-|++++...+||.||.+-.-.+|..|+||.+|-|.+--.+ .|+.+++-|.
T Consensus 458 edR~~ai~afr~gkKD---VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiAT--TfINK~~~es 532 (610)
T KOG0341|consen 458 EDRHYAIEAFRAGKKD---VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIAT--TFINKNQEES 532 (610)
T ss_pred hHHHHHHHHHhcCCCc---eEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceee--eeecccchHH
Confidence 9999999999987665 8999999999999999999999999999999999999999998765333 4666666544
Q ss_pred HHH
Q 000500 741 RMM 743 (1460)
Q Consensus 741 ~I~ 743 (1460)
-++
T Consensus 533 vLl 535 (610)
T KOG0341|consen 533 VLL 535 (610)
T ss_pred HHH
Confidence 443
No 79
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.61 E-value=2.7e-15 Score=152.29 Aligned_cols=120 Identities=28% Similarity=0.457 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeecccc
Q 000500 608 GKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (1460)
Q Consensus 608 gKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAg 687 (1460)
.|+..+..++.+....+.++|||+.....++.+.++|...+.++..++|+++..+|..+++.|+.+. ..+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE---IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC---CcEEEEcChh
Confidence 6888888998887767899999999999999999999988999999999999999999999998755 4589999999
Q ss_pred ccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEE
Q 000500 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1460)
Q Consensus 688 g~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~Vy 730 (1460)
|+|+|++.+++||+++++|++..++|++||++|.||+..|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998887764
No 80
>COG4889 Predicted helicase [General function prediction only]
Probab=99.60 E-value=2.3e-14 Score=174.09 Aligned_cols=400 Identities=18% Similarity=0.177 Sum_probs=205.6
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHC--CCC
Q 000500 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQM 359 (1460)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~--P~l 359 (1460)
..+|||||.++++-....+..+.+|=|-+.+|+|||.+++-+...+.. .++|.+||. ++|.|-.+|+..-. +-.
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~---~~iL~LvPSIsLLsQTlrew~~~~~l~~~ 235 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA---ARILFLVPSISLLSQTLREWTAQKELDFR 235 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh---hheEeecchHHHHHHHHHHHhhccCccce
Confidence 468999999999998888889999999999999999999998888766 478999995 88888666654322 222
Q ss_pred eEEEEEcChhHHH--HHHHhhhcCCCCch--hhhccccCccccccccccccccEEEecHHHHHhh--hcccCCCcceEEE
Q 000500 360 NVVMYVGTSQARN--IIREYEFYFPKNPK--KVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMI 433 (1460)
Q Consensus 360 ~vvvy~G~~~~r~--~i~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d--~~~L~~i~w~~VI 433 (1460)
.+.++..++-+|. -|.-+++-+|.... .+.. .........+--||.+||+.+..- .....--.|++||
T Consensus 236 a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~------~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDlii 309 (1518)
T COG4889 236 ASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILS------EMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLII 309 (1518)
T ss_pred eEEEecCccccccccccccccCCCCCcccHHHHHH------HHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEE
Confidence 3344444444443 23333333322211 1000 001112234456999999998654 3334445799999
Q ss_pred eccccccCC------cchHHHHH--HHhccccceEeeccccccC------CHHHHHHHHHhhcCCCCCChHHHHHHHhhh
Q 000500 434 VDEGHRLKN------KDSKLFSS--LKQYSTRHRVLLTGTPLQN------NLDELFMLMHFLDAGKFGSLEEFQEEFKDI 499 (1460)
Q Consensus 434 vDEAHrlKN------~~Sk~~~a--l~~l~~~~rLLLTGTPlqN------nl~EL~sLL~fL~p~~f~~~~~F~~~f~~~ 499 (1460)
+|||||--+ ..|...+. -..+++..||.|||||--- +..+--+.+ ..+.+...|-+.|..+
T Consensus 310 cDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l-----~SMDDe~~fGeef~rl 384 (1518)
T COG4889 310 CDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAEL-----SSMDDELTFGEEFHRL 384 (1518)
T ss_pred ecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhcccee-----eccchhhhhchhhhcc
Confidence 999999643 11221111 1234567899999999210 000000000 0012223344444333
Q ss_pred hhHHHHHHHHHhhchhhhhhhhhhhhhc-CCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 000500 500 NQEEQISRLHRMLAPHLLRRVKKDVMKE-LPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRK 578 (1460)
Q Consensus 500 ~~~~~i~~L~~~L~p~~LRR~K~dv~~~-LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk 578 (1460)
.-.+. |..+ |...+..++.|.--..+..+-..+. .....|... ....+...-.-|.+
T Consensus 385 ~FgeA-------------------v~rdlLTDYKVmvlaVd~~~i~~~~~~~~~-~~~~~L~~d--d~~kIvG~wnGlak 442 (1518)
T COG4889 385 GFGEA-------------------VERDLLTDYKVMVLAVDKEVIAGVLQSVLS-GPSKGLALD--DVSKIVGCWNGLAK 442 (1518)
T ss_pred cHHHH-------------------HHhhhhccceEEEEEechhhhhhhhhhhcc-Ccccccchh--hhhhhhhhhhhhhh
Confidence 22222 1111 3445555555542221111111100 000000000 00011111111111
Q ss_pred HhC--CcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEec
Q 000500 579 LCC--HPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDG 656 (1460)
Q Consensus 579 ~c~--hP~L~~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridG 656 (1460)
-.. .|-.-......+....-.+..-+..|.++.-...-+.... ..++..+ .....+...-+||
T Consensus 443 r~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y--------------~~Elk~d-~~nL~iSi~HvDG 507 (1518)
T COG4889 443 RNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAY--------------DEELKKD-FKNLKISIDHVDG 507 (1518)
T ss_pred hccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------------HHHHHhc-CCCceEEeecccc
Confidence 100 0000000000011111112222223332221111111000 0111122 1223456677999
Q ss_pred CCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCC-ceEEEEEe
Q 000500 657 KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN-KVMIFRLI 733 (1460)
Q Consensus 657 s~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k-~V~VyrLv 733 (1460)
.|...+|......-|.-......+|-..||+++|+++++.|.||||||--+--..+||.||+.|..-.| .-+|.--|
T Consensus 508 tmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 508 TMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred cccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 999999966655444423444457889999999999999999999999877777899999999976544 34444433
No 81
>PRK09401 reverse gyrase; Reviewed
Probab=99.60 E-value=1e-13 Score=185.53 Aligned_cols=293 Identities=15% Similarity=0.197 Sum_probs=182.9
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCC--C
Q 000500 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ--M 359 (1460)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P~--l 359 (1460)
|..+.++|..++..+ ..+.++++..+||+|||..++..+..+.. .....|||+|. .++.||...+..++.. +
T Consensus 78 G~~pt~iQ~~~i~~i----l~g~dv~i~ApTGsGKT~f~l~~~~~l~~-~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~ 152 (1176)
T PRK09401 78 GSKPWSLQRTWAKRL----LLGESFAIIAPTGVGKTTFGLVMSLYLAK-KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGC 152 (1176)
T ss_pred CCCCcHHHHHHHHHH----HCCCcEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHHHHHhhhcCc
Confidence 457899999887655 57889999999999999755444443332 33489999996 7779999999998754 3
Q ss_pred eEEEEEcChh----HHHH-HHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEe
Q 000500 360 NVVMYVGTSQ----ARNI-IREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIV 434 (1460)
Q Consensus 360 ~vvvy~G~~~----~r~~-i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIv 434 (1460)
.+.+..|... .+.. .... ....++|+|+|++.+......+....+++|||
T Consensus 153 ~~~~~~g~~~~~~~ek~~~~~~l-------------------------~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVv 207 (1176)
T PRK09401 153 GVKILYYHSSLKKKEKEEFLERL-------------------------KEGDFDILVTTSQFLSKNFDELPKKKFDFVFV 207 (1176)
T ss_pred eEEEEEccCCcchhHHHHHHHHH-------------------------hcCCCCEEEECHHHHHHHHHhccccccCEEEE
Confidence 4433443321 1111 1110 12368999999999988766666667999999
Q ss_pred ccccccCCcch--------------HHHHHHHhcc-------------------------ccceEeeccccccCCHHHHH
Q 000500 435 DEGHRLKNKDS--------------KLFSSLKQYS-------------------------TRHRVLLTGTPLQNNLDELF 475 (1460)
Q Consensus 435 DEAHrlKN~~S--------------k~~~al~~l~-------------------------~~~rLLLTGTPlqNnl~EL~ 475 (1460)
||||++-...- .+..++..++ ....++.|||.-...+..
T Consensus 208 DEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~-- 285 (1176)
T PRK09401 208 DDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV-- 285 (1176)
T ss_pred EChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH--
Confidence 99999853110 1111221111 112344444432110000
Q ss_pred HHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHH
Q 000500 476 MLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRN 555 (1460)
Q Consensus 476 sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~ 555 (1460)
.++..++.
T Consensus 286 ----------------------------------------------------------------------~l~~~ll~-- 293 (1176)
T PRK09401 286 ----------------------------------------------------------------------KLFRELLG-- 293 (1176)
T ss_pred ----------------------------------------------------------------------HHhhccce--
Confidence 00000000
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchh
Q 000500 556 YQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQH 635 (1460)
Q Consensus 556 ~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~ 635 (1460)
+. -+..... ++.+ .|-|.. ...|...|.+++..+ |..+|||++...
T Consensus 294 ---~~-v~~~~~~-------~rnI-~~~yi~-------------------~~~k~~~L~~ll~~l---~~~~LIFv~t~~ 339 (1176)
T PRK09401 294 ---FE-VGSPVFY-------LRNI-VDSYIV-------------------DEDSVEKLVELVKRL---GDGGLIFVPSDK 339 (1176)
T ss_pred ---EE-ecCcccc-------cCCc-eEEEEE-------------------cccHHHHHHHHHHhc---CCCEEEEEeccc
Confidence 00 0000000 0000 011110 013455556666544 568999999877
Q ss_pred h---HHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEee----ccccccccCccC-CCEEEEecCCC-
Q 000500 636 M---LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS----TRAGGLGINLAT-ADTVIIYDSDW- 706 (1460)
Q Consensus 636 ~---LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlS----TrAgg~GINL~~-Ad~VIi~DsdW- 706 (1460)
. ++.|.++|...|+++..++|++ ...+++|.++... +||+ |..+++|||++. ...||+|+.|-
T Consensus 340 ~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~---VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~ 411 (1176)
T PRK09401 340 GKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVD---VLVGVASYYGVLVRGIDLPERIRYAIFYGVPKF 411 (1176)
T ss_pred ChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCC---EEEEecCCCCceeecCCCCcceeEEEEeCCCCE
Confidence 7 9999999999999999999999 2346999775443 7777 689999999998 89999999987
Q ss_pred -----ChhhHHHHHHhhccc
Q 000500 707 -----NPHADLQAMARAHRL 721 (1460)
Q Consensus 707 -----NP~~d~QAigRahRi 721 (1460)
....+..++||..++
T Consensus 412 ~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 412 KFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred EEeccccccCHHHHHHHHhh
Confidence 566778888888744
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.60 E-value=4e-13 Score=172.86 Aligned_cols=153 Identities=19% Similarity=0.221 Sum_probs=104.0
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEE
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P~l~vv 362 (1460)
..|.++|.++++.+...+ .+...+|...+|.|||...+..+......+ +.+||++|. .+..|+.+.|.+.+ +..+.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-~~vLvLvPt~~L~~Q~~~~l~~~f-g~~v~ 219 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-KQALVLVPEIALTPQMLARFRARF-GAPVA 219 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHh-CCCEE
Confidence 469999999998875443 456789999999999999887776655543 479999995 77899999999887 46888
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEeccccccCC
Q 000500 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (1460)
Q Consensus 363 vy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrlKN 442 (1460)
+++|..........+.- ......+|||+|+..+.. .+ -+..+|||||+|...-
T Consensus 220 ~~~s~~s~~~r~~~~~~----------------------~~~g~~~IVVgTrsal~~---p~--~~l~liVvDEeh~~s~ 272 (679)
T PRK05580 220 VLHSGLSDGERLDEWRK----------------------AKRGEAKVVIGARSALFL---PF--KNLGLIIVDEEHDSSY 272 (679)
T ss_pred EEECCCCHHHHHHHHHH----------------------HHcCCCCEEEeccHHhcc---cc--cCCCEEEEECCCcccc
Confidence 89887544332221100 012356899999876531 12 2467999999998632
Q ss_pred c--chHHH-----HHHHh-ccccceEeecccc
Q 000500 443 K--DSKLF-----SSLKQ-YSTRHRVLLTGTP 466 (1460)
Q Consensus 443 ~--~Sk~~-----~al~~-l~~~~rLLLTGTP 466 (1460)
. ....+ ..++. ......+++||||
T Consensus 273 ~~~~~p~y~~r~va~~ra~~~~~~~il~SATp 304 (679)
T PRK05580 273 KQQEGPRYHARDLAVVRAKLENIPVVLGSATP 304 (679)
T ss_pred ccCcCCCCcHHHHHHHHhhccCCCEEEEcCCC
Confidence 2 11111 11122 2344678899999
No 83
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.59 E-value=1.5e-13 Score=161.29 Aligned_cols=122 Identities=17% Similarity=0.368 Sum_probs=94.5
Q ss_pred hhhHH--HHHHHHHHHHHH--cCceEEEEecchhhHHHHHHHH----Hh------------------cCCeEEEEecCCC
Q 000500 606 SSGKL--QLLDKMMVKLKE--QGHRVLIYSQFQHMLDLLEDYL----TF------------------KKWQYERIDGKVG 659 (1460)
Q Consensus 606 ~SgKl--~~L~klL~~l~~--~g~KVLIFSq~~~~LdiLed~L----~~------------------~g~~~~ridGs~~ 659 (1460)
..+|+ ..|..+|....+ ...|+|||..-.++.+.=.+.| .. .+.++.|++|+|+
T Consensus 403 VPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~ 482 (708)
T KOG0348|consen 403 VPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSME 482 (708)
T ss_pred cCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchh
Confidence 34444 445555554432 3458899977766655433333 22 2447999999999
Q ss_pred HHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEE
Q 000500 660 GAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1460)
Q Consensus 660 ~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~Vy 730 (1460)
.++|..++..|..... ++|++|.+++.||+|+.+..||-||+++.+..|+.|+||..|+|-+-.-..|
T Consensus 483 QeeRts~f~~Fs~~~~---~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLf 550 (708)
T KOG0348|consen 483 QEERTSVFQEFSHSRR---AVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLF 550 (708)
T ss_pred HHHHHHHHHhhccccc---eEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEE
Confidence 9999999999976554 4899999999999999999999999999999999999999999988765543
No 84
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.59 E-value=7.2e-15 Score=157.99 Aligned_cols=165 Identities=26% Similarity=0.411 Sum_probs=111.2
Q ss_pred CCCCHHHHHHHHHHHHhhhcC---CcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCC
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM 359 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~---~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P~l 359 (1460)
.+|||||.+++.-+...+... .+++|..+||+|||++++.++..+.. ++|||||. +++.||..+|..+.+..
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~~~~~~~~ 77 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEFDDFGSEK 77 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHHHHHSTTS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHHHHhhhhh
Confidence 369999999999887777654 89999999999999999998888877 89999996 88899999998888655
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcc-------------cCC
Q 000500 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-------------LKP 426 (1460)
Q Consensus 360 ~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~-------------L~~ 426 (1460)
............. . .... .................+++++++..+...... +..
T Consensus 78 ~~~~~~~~~~~~~--~--~~~~---------~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 144 (184)
T PF04851_consen 78 YNFFEKSIKPAYD--S--KEFI---------SIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLK 144 (184)
T ss_dssp EEEEE--GGGCCE-----SEEE---------TTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGG
T ss_pred hhhcccccccccc--c--cccc---------ccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhcc
Confidence 4443321110000 0 0000 000000001112234678999999999765322 222
Q ss_pred CcceEEEeccccccCCcchHHHHHHHhccccceEeeccccc
Q 000500 427 IKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPL 467 (1460)
Q Consensus 427 i~w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPl 467 (1460)
-.+++||+||||++.+... ++.+..+...++|+|||||.
T Consensus 145 ~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 145 NKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp GSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred ccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 3678999999999876543 55555588889999999994
No 85
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.59 E-value=1.3e-13 Score=179.59 Aligned_cols=332 Identities=19% Similarity=0.228 Sum_probs=222.6
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHH-HHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHC---C-C
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERISPHLVVAPL-STLRNWEREFATWA---P-Q 358 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~---P-~ 358 (1460)
.|+.||.++++.+ .+|+++|+.-.||+|||...+ .++..+........|+|-|. .|.......|.+|. | .
T Consensus 70 ~lY~HQ~~A~~~~----~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~ 145 (851)
T COG1205 70 RLYSHQVDALRLI----REGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGK 145 (851)
T ss_pred cccHHHHHHHHHH----HCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCc
Confidence 4999999999887 788999999999999999864 55566666666699999995 66666888888876 3 4
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh------hcccCCCcceEE
Q 000500 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD------SASLKPIKWQCM 432 (1460)
Q Consensus 359 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d------~~~L~~i~w~~V 432 (1460)
+++..|+|+........ + ...+.+|++|+|+|+... ...+..-.+.+|
T Consensus 146 v~~~~y~Gdt~~~~r~~---~-----------------------~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~l 199 (851)
T COG1205 146 VTFGRYTGDTPPEERRA---I-----------------------IRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYL 199 (851)
T ss_pred ceeeeecCCCChHHHHH---H-----------------------HhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEE
Confidence 67788888765432210 0 124789999999999652 111112237899
Q ss_pred EeccccccCCcc-hHHHHHHHhcc--------ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHH
Q 000500 433 IVDEGHRLKNKD-SKLFSSLKQYS--------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEE 503 (1460)
Q Consensus 433 IvDEAHrlKN~~-Sk~~~al~~l~--------~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~ 503 (1460)
||||+|-+++.. |...-.++.+. ....++.|||- ++..+|...+......
T Consensus 200 VvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f~- 258 (851)
T COG1205 200 VVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDFE- 258 (851)
T ss_pred EEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCcce-
Confidence 999999998743 44444444432 23457888883 2333333333211000
Q ss_pred HHHHHHHhhchhhhhhhhhhhhhc-CCCceeEEEee-cCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhC
Q 000500 504 QISRLHRMLAPHLLRRVKKDVMKE-LPPKKELILRV-ELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (1460)
Q Consensus 504 ~i~~L~~~L~p~~LRR~K~dv~~~-LP~k~e~iv~v-~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~ 581 (1460)
..+..+ -|.-..+.+.- +........
T Consensus 259 ------------------~~v~~~g~~~~~~~~~~~~p~~~~~~~~---------------------------------- 286 (851)
T COG1205 259 ------------------VPVDEDGSPRGLRYFVRREPPIRELAES---------------------------------- 286 (851)
T ss_pred ------------------eeccCCCCCCCceEEEEeCCcchhhhhh----------------------------------
Confidence 001111 11111111111 100000000
Q ss_pred CcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHH----HHHHhcC----CeEEE
Q 000500 582 HPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLE----DYLTFKK----WQYER 653 (1460)
Q Consensus 582 hP~L~~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLe----d~L~~~g----~~~~r 653 (1460)
..-.+...+..++..+...|-++|+|+.....+..+. ..+...+ ..+..
T Consensus 287 -----------------------~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~ 343 (851)
T COG1205 287 -----------------------IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVST 343 (851)
T ss_pred -----------------------cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheee
Confidence 0123455667777788889999999999999988886 3333344 56888
Q ss_pred EecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCC-ChhhHHHHHHhhcccCCCCceEEEEE
Q 000500 654 IDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKVMIFRL 732 (1460)
Q Consensus 654 idGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdW-NP~~d~QAigRahRiGQ~k~V~VyrL 732 (1460)
+.|++...+|..+...|..++ +.++++|.|.-.||++.+.+.||.+--+- .-....|+.||++|-||.- .++..
T Consensus 344 ~~~~~~~~er~~ie~~~~~g~---~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~--l~~~v 418 (851)
T COG1205 344 YRAGLHREERRRIEAEFKEGE---LLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQES--LVLVV 418 (851)
T ss_pred ccccCCHHHHHHHHHHHhcCC---ccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCc--eEEEE
Confidence 999999999999999997744 45899999999999999999999999988 7799999999999999543 33333
Q ss_pred ecCCCHHHHHHHHHH
Q 000500 733 ITRGSIEERMMQMTK 747 (1460)
Q Consensus 733 vt~~TiEE~I~e~a~ 747 (1460)
.-.+-++..++..-.
T Consensus 419 ~~~~~~d~yy~~~p~ 433 (851)
T COG1205 419 LRSDPLDSYYLRHPE 433 (851)
T ss_pred eCCCccchhhhhCcH
Confidence 336777777655433
No 86
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.58 E-value=1.6e-13 Score=161.38 Aligned_cols=325 Identities=15% Similarity=0.240 Sum_probs=221.8
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHH-HHHHHHHHhCCCC-----cEEEEEcc-ccHHHHHHHHHHHC-
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERIS-----PHLVVAPL-STLRNWEREFATWA- 356 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~L~~~~~~-----p~LIVvP~-sll~qW~~E~~kw~- 356 (1460)
.|...|...+-.. -.|..+|=|.-+|+|||+.. +-+|..|+....+ -.|||.|. .+-.|-..-+.+..
T Consensus 91 ~~teiQ~~~Ip~a----L~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk 166 (758)
T KOG0343|consen 91 KMTEIQRDTIPMA----LQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGK 166 (758)
T ss_pred cHHHHHHhhcchh----ccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhh
Confidence 4667888877544 46788888999999999874 4566777765443 67999996 44456555554433
Q ss_pred -CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh---cccCCCcceEE
Q 000500 357 -PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCM 432 (1460)
Q Consensus 357 -P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~---~~L~~i~w~~V 432 (1460)
..+..-.+.|..+...... .....+|+|+|+..+.... ..|..-...++
T Consensus 167 ~h~fSaGLiiGG~~~k~E~e---------------------------Ri~~mNILVCTPGRLLQHmde~~~f~t~~lQmL 219 (758)
T KOG0343|consen 167 HHDFSAGLIIGGKDVKFELE---------------------------RISQMNILVCTPGRLLQHMDENPNFSTSNLQML 219 (758)
T ss_pred ccccccceeecCchhHHHHH---------------------------hhhcCCeEEechHHHHHHhhhcCCCCCCcceEE
Confidence 2566666777765432211 1245689999999997653 34566678899
Q ss_pred EeccccccCCcc--hHHHHHHHhccc-cceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000500 433 IVDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1460)
Q Consensus 433 IvDEAHrlKN~~--Sk~~~al~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~ 509 (1460)
|+|||.|+-... ..+-..+..+.. +..||.|||+- +++.+|.- |
T Consensus 220 vLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt-~svkdLaR-------------------------------L- 266 (758)
T KOG0343|consen 220 VLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQT-KSVKDLAR-------------------------------L- 266 (758)
T ss_pred EeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccc-hhHHHHHH-------------------------------h-
Confidence 999999986543 334444555543 45699999983 23333221 1
Q ss_pred HhhchhhhhhhhhhhhhcCCCceeEEEe---ecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccc
Q 000500 510 RMLAPHLLRRVKKDVMKELPPKKELILR---VELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1460)
Q Consensus 510 ~~L~p~~LRR~K~dv~~~LP~k~e~iv~---v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~ 586 (1460)
.|.....+.|. +.-+|. .|++ -|+
T Consensus 267 -----------------sL~dP~~vsvhe~a~~atP~-------------------------------~L~Q----~y~- 293 (758)
T KOG0343|consen 267 -----------------SLKDPVYVSVHENAVAATPS-------------------------------NLQQ----SYV- 293 (758)
T ss_pred -----------------hcCCCcEEEEeccccccChh-------------------------------hhhh----eEE-
Confidence 11111111111 000110 1111 011
Q ss_pred cCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHh--cCCeEEEEecCCCHHHHH
Q 000500 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGGAERQ 664 (1460)
Q Consensus 587 ~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~--~g~~~~ridGs~~~~eRq 664 (1460)
++....|+..|...|.... ..|.|||...-.....+...+.. -|++..-++|.++...|.
T Consensus 294 ----------------~v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ 355 (758)
T KOG0343|consen 294 ----------------IVPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRI 355 (758)
T ss_pred ----------------EEehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHH
Confidence 1123347778888887654 45899998888877777776644 399999999999999999
Q ss_pred HHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCCHHHHHHH
Q 000500 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 744 (1460)
Q Consensus 665 ~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e 744 (1460)
.+..+|.... -++|.+|..++.||+++.+|.||-+|.|=+-..|++|.||..|.+-.-+..+|- --+-||.|+.
T Consensus 356 ev~~~F~~~~---~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L---~psEeE~~l~ 429 (758)
T KOG0343|consen 356 EVYKKFVRKR---AVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLML---TPSEEEAMLK 429 (758)
T ss_pred HHHHHHHHhc---ceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEE---cchhHHHHHH
Confidence 9999997633 358999999999999999999999999999999999999999998777766433 2455788888
Q ss_pred HHHHHH
Q 000500 745 MTKKKM 750 (1460)
Q Consensus 745 ~a~~K~ 750 (1460)
++++|.
T Consensus 430 ~Lq~k~ 435 (758)
T KOG0343|consen 430 KLQKKK 435 (758)
T ss_pred HHHHcC
Confidence 888775
No 87
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.58 E-value=8.7e-14 Score=162.35 Aligned_cols=321 Identities=16% Similarity=0.273 Sum_probs=208.1
Q ss_pred CCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHH-HHHHHHHHHhCCC----CcEEEEEccccH----HHHHHHHHHHC
Q 000500 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERI----SPHLVVAPLSTL----RNWEREFATWA 356 (1460)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiq-aIa~l~~L~~~~~----~p~LIVvP~sll----~qW~~E~~kw~ 356 (1460)
..|.|...+--. .-|+..+-+..+|+|||.. +|-+|..|+.... .++||+||.--| .+-.+.+.+|+
T Consensus 204 PTpIQ~a~IPva----llgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt 279 (691)
T KOG0338|consen 204 PTPIQVATIPVA----LLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFT 279 (691)
T ss_pred CCchhhhcccHH----hhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 456666654321 2356667788999999976 4556666654432 389999996433 45667778888
Q ss_pred CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh---cccCCCcceEEE
Q 000500 357 PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCMI 433 (1460)
Q Consensus 357 P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~---~~L~~i~w~~VI 433 (1460)
++.+....|.-+-+..-... ...+||||.|+..+.... ..|.--...++|
T Consensus 280 -~I~~~L~vGGL~lk~QE~~L--------------------------Rs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLv 332 (691)
T KOG0338|consen 280 -DITVGLAVGGLDLKAQEAVL--------------------------RSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLV 332 (691)
T ss_pred -cceeeeeecCccHHHHHHHH--------------------------hhCCCEEEecchhHHHHhccCCCccccceeEEE
Confidence 68888888887765432111 246899999999987643 333333567899
Q ss_pred eccccccCCcch-HHHHHHHhccccc--eEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHH
Q 000500 434 VDEGHRLKNKDS-KLFSSLKQYSTRH--RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1460)
Q Consensus 434 vDEAHrlKN~~S-k~~~al~~l~~~~--rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~ 510 (1460)
+|||.|+....- --...+..+.+++ -+|.|||- ...+.+|.+
T Consensus 333 lDEADRMLeegFademnEii~lcpk~RQTmLFSATM-teeVkdL~s---------------------------------- 377 (691)
T KOG0338|consen 333 LDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATM-TEEVKDLAS---------------------------------- 377 (691)
T ss_pred echHHHHHHHHHHHHHHHHHHhccccccceeehhhh-HHHHHHHHH----------------------------------
Confidence 999999864321 1222333444444 48888883 112222221
Q ss_pred hhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCC
Q 000500 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1460)
Q Consensus 511 ~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e 590 (1460)
+ .|. ...-|+|..... ....|..-..++|
T Consensus 378 l---------------SL~--kPvrifvd~~~~---------------------~a~~LtQEFiRIR------------- 406 (691)
T KOG0338|consen 378 L---------------SLN--KPVRIFVDPNKD---------------------TAPKLTQEFIRIR------------- 406 (691)
T ss_pred h---------------hcC--CCeEEEeCCccc---------------------cchhhhHHHheec-------------
Confidence 1 110 111122211100 0000000000000
Q ss_pred CCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHH
Q 000500 591 PDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRF 670 (1460)
Q Consensus 591 ~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~F 670 (1460)
+.. ..-+-.+|..++.++. ..+++||.+.......|.-.|...|+++.-++|+.++.+|-..+..|
T Consensus 407 ~~r------------e~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kF 472 (691)
T KOG0338|consen 407 PKR------------EGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKF 472 (691)
T ss_pred ccc------------ccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHH
Confidence 000 0012233444555544 45899999999999999999999999999999999999999999999
Q ss_pred hccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCC-CceEEEEEecCCCHHHHHHHH
Q 000500 671 NAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT-NKVMIFRLITRGSIEERMMQM 745 (1460)
Q Consensus 671 n~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~-k~V~VyrLvt~~TiEE~I~e~ 745 (1460)
.+..- -|||+|..++.||++...-+||.|+.|-+-..|++|.||..|-|.. +.| -|+.++ |.+|+.-
T Consensus 473 k~~ei---dvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsV---tlvgE~--dRkllK~ 540 (691)
T KOG0338|consen 473 KKEEI---DVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSV---TLVGES--DRKLLKE 540 (691)
T ss_pred HhccC---CEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceE---EEeccc--cHHHHHH
Confidence 87544 4899999999999999999999999999999999999999999865 344 477776 5555543
No 88
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.57 E-value=1.9e-13 Score=159.16 Aligned_cols=317 Identities=19% Similarity=0.275 Sum_probs=211.8
Q ss_pred CCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHH-HHHHHh-----CCCCcE-EEEEcc-ccHHHHHHHHHHHC-
Q 000500 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFG-----ERISPH-LVVAPL-STLRNWEREFATWA- 356 (1460)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~-l~~L~~-----~~~~p~-LIVvP~-sll~qW~~E~~kw~- 356 (1460)
..|.|-.+|--. -.++.+|=..-+|+|||...+.- +.++.. .+.+|+ ||+||. ++..|-..|.++|+
T Consensus 246 ptpiq~qalpta----lsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K 321 (731)
T KOG0339|consen 246 PTPIQCQALPTA----LSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGK 321 (731)
T ss_pred CCcccccccccc----cccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhh
Confidence 455566665432 34566666667899999654432 222222 134577 677885 77789999999985
Q ss_pred -CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcceEEE
Q 000500 357 -PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMI 433 (1460)
Q Consensus 357 -P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~--~~L~~i~w~~VI 433 (1460)
-+++++..+|.....+.+.... ....+||+|.+.+.... ....-.+-.+||
T Consensus 322 ~ygl~~v~~ygGgsk~eQ~k~Lk--------------------------~g~EivVaTPgRlid~VkmKatn~~rvS~LV 375 (731)
T KOG0339|consen 322 AYGLRVVAVYGGGSKWEQSKELK--------------------------EGAEIVVATPGRLIDMVKMKATNLSRVSYLV 375 (731)
T ss_pred hccceEEEeecCCcHHHHHHhhh--------------------------cCCeEEEechHHHHHHHHhhcccceeeeEEE
Confidence 3688888888776655544431 35679999999886432 122223457899
Q ss_pred eccccccCCc--chHHHHHHHhcccc-ceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH-
Q 000500 434 VDEGHRLKNK--DSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH- 509 (1460)
Q Consensus 434 vDEAHrlKN~--~Sk~~~al~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~- 509 (1460)
+|||.|+-.. ..+.......++.. ..|+.++|- . ..+.+|.
T Consensus 376 ~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf--------------------------~---------~kIe~lar 420 (731)
T KOG0339|consen 376 LDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATF--------------------------K---------KKIEKLAR 420 (731)
T ss_pred EechhhhhccccHHHHHHHHhhcCCcceEEEeeccc--------------------------h---------HHHHHHHH
Confidence 9999998543 33444444555554 357778773 1 1111111
Q ss_pred HhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCC
Q 000500 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1460)
Q Consensus 510 ~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~ 589 (1460)
.+|.. -+|++.-+|.. -..-...+|.| |
T Consensus 421 d~L~d-pVrvVqg~vge-an~dITQ~V~V-----------------------------------------~--------- 448 (731)
T KOG0339|consen 421 DILSD-PVRVVQGEVGE-ANEDITQTVSV-----------------------------------------C--------- 448 (731)
T ss_pred HHhcC-CeeEEEeehhc-cccchhheeee-----------------------------------------c---------
Confidence 11110 01111111110 00000001111 1
Q ss_pred CCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHH
Q 000500 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1460)
Q Consensus 590 e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~ 669 (1460)
.....|+..|.+-|......| +||||..-....+-|...|..+|+++..++|++...+|.+.|..
T Consensus 449 --------------~s~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~ 513 (731)
T KOG0339|consen 449 --------------PSEEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSK 513 (731)
T ss_pred --------------cCcHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHH
Confidence 112346666666666665555 89999999999999999999999999999999999999999999
Q ss_pred HhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCCHH
Q 000500 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1460)
Q Consensus 670 Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiE 739 (1460)
|...... +|+.|....+|+++....|||+||..-.-..+.|++||.+|-|-+ -..|-|||....+
T Consensus 514 fKkk~~~---VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 514 FKKKRKP---VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred HhhcCCc---eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 9876555 899999999999999999999999999999999999999999976 5678899876544
No 89
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.56 E-value=4.4e-13 Score=151.28 Aligned_cols=306 Identities=18% Similarity=0.227 Sum_probs=202.4
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHH-HHHHHHHHHhCCCC-cEEEEEccccH-HHHHHHHHHHC--CCC
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERIS-PHLVVAPLSTL-RNWEREFATWA--PQM 359 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiq-aIa~l~~L~~~~~~-p~LIVvP~sll-~qW~~E~~kw~--P~l 359 (1460)
+..|.|...+--+ -.|+.||=+.-+|+|||.. ++-.+..|.....+ -.||++|..-+ .|-...|.-.. -++
T Consensus 29 ~pTpiQ~~cIpkI----LeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 29 KPTPIQQACIPKI----LEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCchHhhhhHHH----hcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 4567888887665 5789999999999999976 45556666666566 56999997544 44444444332 256
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc-ccCCC-----cceEEE
Q 000500 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-SLKPI-----KWQCMI 433 (1460)
Q Consensus 360 ~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~-~L~~i-----~w~~VI 433 (1460)
++.+++|..+--..-. + -..+.||||+|.+.+..... .+... +..++|
T Consensus 105 K~~vivGG~d~i~qa~--~------------------------L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 105 KVSVIVGGTDMIMQAA--I------------------------LSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred eEEEEEccHHHhhhhh--h------------------------cccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 7778887754321111 0 12467899999988743211 11112 335799
Q ss_pred eccccccCCcch--HHHHHHHhccc-cceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHH
Q 000500 434 VDEGHRLKNKDS--KLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1460)
Q Consensus 434 vDEAHrlKN~~S--k~~~al~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~ 510 (1460)
+|||.++-+..- .+.-....+.. +.-+++|||- .+++.+++.
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATi-td~i~ql~~---------------------------------- 203 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATI-TDTIKQLFG---------------------------------- 203 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCccceEEEEeeh-hhHHHHhhc----------------------------------
Confidence 999999865321 11111122222 2446677662 111111110
Q ss_pred hhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCC
Q 000500 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1460)
Q Consensus 511 ~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e 590 (1460)
.|-.. +.+|......
T Consensus 204 -----------------~~i~k------------------------------------------------~~a~~~e~~~ 218 (442)
T KOG0340|consen 204 -----------------CPITK------------------------------------------------SIAFELEVID 218 (442)
T ss_pred -----------------CCccc------------------------------------------------ccceEEeccC
Confidence 00000 0000000000
Q ss_pred CCcccchHHH---HHHHhhhhHHHHHHHHHHHHHH-cCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Q 000500 591 PDIEDTNESF---KQLLESSGKLQLLDKMMVKLKE-QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1460)
Q Consensus 591 ~~~~~~~~~~---~~lv~~SgKl~~L~klL~~l~~-~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~ 666 (1460)
+.. ..+.+ -.++...+|-..|..+|+...+ ....++||.|-+....+|.-.|...++....+++.++..+|-.+
T Consensus 219 ~vs--tvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~a 296 (442)
T KOG0340|consen 219 GVS--TVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAA 296 (442)
T ss_pred CCC--chhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHH
Confidence 000 00000 1122345677888899988877 56789999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCC
Q 000500 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1460)
Q Consensus 667 Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k 725 (1460)
+.+|.. +...+|++|.+++.|+++++++.||.||.|-.|..|++|.||..|-|..-
T Consensus 297 LsrFrs---~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G 352 (442)
T KOG0340|consen 297 LSRFRS---NAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKG 352 (442)
T ss_pred HHHHhh---cCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCc
Confidence 999976 44458999999999999999999999999999999999999999888764
No 90
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.54 E-value=8e-13 Score=164.54 Aligned_cols=94 Identities=19% Similarity=0.196 Sum_probs=75.5
Q ss_pred HHHHHHHHHhc--CCeEEEEecCCCHHHH--HHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCC---C--
Q 000500 637 LDLLEDYLTFK--KWQYERIDGKVGGAER--QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW---N-- 707 (1460)
Q Consensus 637 LdiLed~L~~~--g~~~~ridGs~~~~eR--q~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdW---N-- 707 (1460)
.+.+++.|... +.++.++|+.++...+ .++++.|.++.. .+|++|...+.|+|++.++.|+++|.|- .
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~---~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKA---DILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCC---CEEEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 46677777655 7899999999876665 889999986443 4899999999999999999998887763 2
Q ss_pred -------hhhHHHHHHhhcccCCCCceEEEEEe
Q 000500 708 -------PHADLQAMARAHRLGQTNKVMIFRLI 733 (1460)
Q Consensus 708 -------P~~d~QAigRahRiGQ~k~V~VyrLv 733 (1460)
.+.+.|+.||++|.+....|.|.-+-
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~ 380 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYN 380 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEEEEEeCC
Confidence 36789999999998877777654433
No 91
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.54 E-value=9.4e-13 Score=167.70 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=112.8
Q ss_pred hhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeec
Q 000500 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1460)
Q Consensus 605 ~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlST 684 (1460)
....|+..+.+-+..+.+.|..|||||..+...+.|..+|...|+++..++|.....+|+.+.+.|+.+ .++|+|
T Consensus 425 t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G-----~VtIAT 499 (896)
T PRK13104 425 TQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG-----AVTIAT 499 (896)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC-----cEEEec
Confidence 356799999999999999999999999999999999999999999999999999999999999999764 279999
Q ss_pred cccccccCccC--------------------------------------CCEEEEecCCCChhhHHHHHHhhcccCCCCc
Q 000500 685 RAGGLGINLAT--------------------------------------ADTVIIYDSDWNPHADLQAMARAHRLGQTNK 726 (1460)
Q Consensus 685 rAgg~GINL~~--------------------------------------Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~ 726 (1460)
..+|.|+++.= .=+||.-.-.=|-..+.|..||++|.|..-.
T Consensus 500 NmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGs 579 (896)
T PRK13104 500 NMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGS 579 (896)
T ss_pred cCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCc
Confidence 99999999752 1278888899999999999999999998866
Q ss_pred eEEEEEecCCCHHHHHHHH
Q 000500 727 VMIFRLITRGSIEERMMQM 745 (1460)
Q Consensus 727 V~VyrLvt~~TiEE~I~e~ 745 (1460)
...|- |+|..++.+
T Consensus 580 s~f~l-----SleD~l~~~ 593 (896)
T PRK13104 580 SRFYL-----SLEDNLMRI 593 (896)
T ss_pred eEEEE-----EcCcHHHHH
Confidence 65443 345555544
No 92
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.52 E-value=2.9e-13 Score=161.10 Aligned_cols=311 Identities=17% Similarity=0.221 Sum_probs=204.1
Q ss_pred CCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHH-HHHHHHHHhCCCC-cEEEEEccc-cHHHHHHHHHHHCC---CC
Q 000500 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERIS-PHLVVAPLS-TLRNWEREFATWAP---QM 359 (1460)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~L~~~~~~-p~LIVvP~s-ll~qW~~E~~kw~P---~l 359 (1460)
..+.|..++-.. ..+-..|+..-.|+|||++. ++.+..|-..... -.+||+|.- +--|-..-|...+| ++
T Consensus 48 ptkiQaaAIP~~----~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~ 123 (980)
T KOG4284|consen 48 PTKIQAAAIPAI----FSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGA 123 (980)
T ss_pred CCchhhhhhhhh----hcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCc
Confidence 345677766433 34567899999999999873 3334444333323 679999974 44677777777776 67
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hcccCCCcceEEEeccc
Q 000500 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEG 437 (1460)
Q Consensus 360 ~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d--~~~L~~i~w~~VIvDEA 437 (1460)
++.+|.|...-..-... ..+.+|+|-|...+..- ...+..-+.+++|+|||
T Consensus 124 ~csvfIGGT~~~~d~~r---------------------------lk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEA 176 (980)
T KOG4284|consen 124 RCSVFIGGTAHKLDLIR---------------------------LKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEA 176 (980)
T ss_pred ceEEEecCchhhhhhhh---------------------------hhhceEEecCchHHHHHHHhcCCCccceeEEEeccH
Confidence 88889887654321111 13456999999988653 44566667789999999
Q ss_pred cccCCcch---HHHHHHHhcc-ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhc
Q 000500 438 HRLKNKDS---KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1460)
Q Consensus 438 HrlKN~~S---k~~~al~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~ 513 (1460)
..|-...| .....+..+. .+..+..|||=- .++. ..|.+.++
T Consensus 177 DkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp-~nLd---------------------------------n~Lsk~mr 222 (980)
T KOG4284|consen 177 DKLMDTESFQDDINIIINSLPQIRQVAAFSATYP-RNLD---------------------------------NLLSKFMR 222 (980)
T ss_pred HhhhchhhHHHHHHHHHHhcchhheeeEEeccCc-hhHH---------------------------------HHHHHHhc
Confidence 99865444 3444445554 345677888831 1111 12333333
Q ss_pred hhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000500 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1460)
Q Consensus 514 p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~ 593 (1460)
.-+|-|.-++-. .|-..+.+++.+.-- .+.+
T Consensus 223 dp~lVr~n~~d~-~L~GikQyv~~~~s~----------------------------nnsv-------------------- 253 (980)
T KOG4284|consen 223 DPALVRFNADDV-QLFGIKQYVVAKCSP----------------------------NNSV-------------------- 253 (980)
T ss_pred ccceeecccCCc-eeechhheeeeccCC----------------------------cchH--------------------
Confidence 223323222211 111111111100000 0000
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcc
Q 000500 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1460)
Q Consensus 594 ~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~ 673 (1460)
+. .--|++.|..++..+. =...||||....-.+-|.++|...|+.+..|.|.|+..+|..+++.+.+
T Consensus 254 -------ee---mrlklq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~- 320 (980)
T KOG4284|consen 254 -------EE---MRLKLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA- 320 (980)
T ss_pred -------HH---HHHHHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh-
Confidence 00 0114444444444432 1257999999999999999999999999999999999999999999976
Q ss_pred CCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCC
Q 000500 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1460)
Q Consensus 674 ~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k 725 (1460)
-...+|+||...+.||+-..++.||.+|++-+-..|.+|||||+|.|..-
T Consensus 321 --f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G 370 (980)
T KOG4284|consen 321 --FRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG 370 (980)
T ss_pred --ceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccc
Confidence 34568999999999999999999999999999999999999999999754
No 93
>PRK09694 helicase Cas3; Provisional
Probab=99.51 E-value=2e-12 Score=167.90 Aligned_cols=357 Identities=17% Similarity=0.160 Sum_probs=191.7
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCC-CCcEEEEEcc-ccHHHHHHHHHH----HC
Q 000500 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPL-STLRNWEREFAT----WA 356 (1460)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~-~~p~LIVvP~-sll~qW~~E~~k----w~ 356 (1460)
+...+|+|....+-. ..++..||-..||.|||-.++.++..+...+ ...++++.|. .+..+-...+.. .+
T Consensus 284 ~~~p~p~Q~~~~~~~----~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALP----LQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhc----cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 567999999764321 3456689999999999999999888776653 3588999996 455555555544 34
Q ss_pred CCCeEEEEEcChhHHHHHHHhhhc-CCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc-----ccC--CCc
Q 000500 357 PQMNVVMYVGTSQARNIIREYEFY-FPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-----SLK--PIK 428 (1460)
Q Consensus 357 P~l~vvvy~G~~~~r~~i~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~-----~L~--~i~ 428 (1460)
+..++...||............-. .........................-.+|+|+|.+.+..-.- .++ .+.
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 566788888876432111110000 000000000000000111011122335799999988763211 111 122
Q ss_pred ceEEEeccccccCCcchHH-HHHHHhcc--ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHH
Q 000500 429 WQCMIVDEGHRLKNKDSKL-FSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (1460)
Q Consensus 429 w~~VIvDEAHrlKN~~Sk~-~~al~~l~--~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i 505 (1460)
-.+|||||+|-+-...+.+ ...|+.+. ....++||||+-..-..+|...+. ...
T Consensus 440 ~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~---~~~-------------------- 496 (878)
T PRK09694 440 RSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYG---GHD-------------------- 496 (878)
T ss_pred cCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhc---ccc--------------------
Confidence 3489999999985433332 33333332 245799999973221112111110 000
Q ss_pred HHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccc
Q 000500 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1460)
Q Consensus 506 ~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L 585 (1460)
+. ......|-.... ... ... .+ .+..|+..
T Consensus 497 --------~~-------~~~~~YPlvt~~------~~~-------------------~~~---------~~-~~~~~~~~ 526 (878)
T PRK09694 497 --------PV-------ELSSAYPLITWR------GVN-------------------GAQ---------RF-DLSAHPEQ 526 (878)
T ss_pred --------cc-------cccccccccccc------ccc-------------------cce---------ee-eccccccc
Confidence 00 000000000000 000 000 00 00000000
Q ss_pred ccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcC---CeEEEEecCCCHHH
Q 000500 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK---WQYERIDGKVGGAE 662 (1460)
Q Consensus 586 ~~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g---~~~~ridGs~~~~e 662 (1460)
.... .... ... ..+-.....-.++..++.. ...|.+||||++.+.....+.+.|...+ +++..++|.++..+
T Consensus 527 ~~~~-~~v~-v~~--~~~~~~~~~~~~l~~i~~~-~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~d 601 (878)
T PRK09694 527 LPAR-FTIQ-LEP--ICLADMLPDLTLLQRMIAA-ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLND 601 (878)
T ss_pred cCcc-eEEE-EEe--eccccccCHHHHHHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Confidence 0000 0000 000 0000000111233333333 3568899999999999999999998764 68999999999999
Q ss_pred H----HHHHHHHhccCC-CCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCC
Q 000500 663 R----QIRIDRFNAKNS-SRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT 724 (1460)
Q Consensus 663 R----q~~Id~Fn~~~s-~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~ 724 (1460)
| +++++.|...+. ....+||+|.+...|||+ .+|.+|....+ ...++||+||+||.|..
T Consensus 602 R~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 602 RREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred HHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 8 467888943222 223589999999999999 57988886655 56899999999999874
No 94
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.50 E-value=1.8e-12 Score=173.85 Aligned_cols=313 Identities=14% Similarity=0.159 Sum_probs=177.8
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCC--e
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM--N 360 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P~l--~ 360 (1460)
..+.++|..++..+ ..+.+.++...+|+|||..++.++..+... ...+|||+|. .+..|+...|..++..+ .
T Consensus 77 ~~p~~iQ~~~i~~i----l~G~d~vi~ApTGsGKT~f~l~~~~~l~~~-g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~ 151 (1171)
T TIGR01054 77 SEPWSIQKMWAKRV----LRGDSFAIIAPTGVGKTTFGLAMSLFLAKK-GKRCYIILPTTLLVIQVAEKISSLAEKAGVG 151 (1171)
T ss_pred CCCcHHHHHHHHHH----hCCCeEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCc
Confidence 45788999987665 578899999999999998666555554433 3489999996 77789999999987542 2
Q ss_pred ---EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEeccc
Q 000500 361 ---VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEG 437 (1460)
Q Consensus 361 ---vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEA 437 (1460)
+..|+|...........+. .....++|+|+|+..+......+.. .+++||||||
T Consensus 152 ~~~i~~~~Gg~~~~e~~~~~~~----------------------l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEa 208 (1171)
T TIGR01054 152 TVNIGAYHSRLPTKEKKEFMER----------------------IENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDV 208 (1171)
T ss_pred eeeeeeecCCCCHHHHHHHHHH----------------------HhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeCh
Confidence 2346776433221111000 0123589999999999876665554 7999999999
Q ss_pred cccCCcchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhhh
Q 000500 438 HRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1460)
Q Consensus 438 HrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~L 517 (1460)
|++-......-..|.. .|= . -.++-.++..+...... . ..+.+..+...++.
T Consensus 209 D~~L~~~k~vd~il~l---------lGF--~--~e~i~~il~~~~~~~~~---~---------~~~~~~~~~~~~~~--- 260 (1171)
T TIGR01054 209 DALLKASKNVDKLLKL---------LGF--S--EELIEKAWKLIRLRLKL---Y---------RALHAKKRLELLEA--- 260 (1171)
T ss_pred HhhhhccccHHHHHHH---------cCC--C--HHHHHHHHHHhhhcccc---c---------hHHHHHHHHHHHHh---
Confidence 9985532111111111 110 0 01112222222111110 0 01122222222221
Q ss_pred hhhhhhhhhcCCCcee-EEEeecCC--HHH--HHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCC
Q 000500 518 RRVKKDVMKELPPKKE-LILRVELS--SKQ--KEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (1460)
Q Consensus 518 RR~K~dv~~~LP~k~e-~iv~v~Ls--~~Q--k~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~ 592 (1460)
+|.+.. ..+...-| +.. ..+++.++ .-..+... ..++.+ .|.|..
T Consensus 261 ----------~~~~~q~~li~~SAT~~p~~~~~~l~r~ll-------~~~v~~~~------~~~r~I-~~~~~~------ 310 (1171)
T TIGR01054 261 ----------IPGKKRGCLIVSSATGRPRGKRAKLFRELL-------GFEVGGGS------DTLRNV-VDVYVE------ 310 (1171)
T ss_pred ----------hhhccCcEEEEEeCCCCccccHHHHccccc-------ceEecCcc------ccccce-EEEEEe------
Confidence 111111 11111111 110 01111110 00000000 001110 111110
Q ss_pred cccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecch---hhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHH
Q 000500 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQ---HMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1460)
Q Consensus 593 ~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~---~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~ 669 (1460)
...+...|.++|..+ |..+|||++.. ..++.|..+|...|+++..++|.++ +.++++
T Consensus 311 -------------~~~~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~ 370 (1171)
T TIGR01054 311 -------------DEDLKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEK 370 (1171)
T ss_pred -------------cccHHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHH
Confidence 011223445555543 67899999988 8999999999999999999999986 478999
Q ss_pred HhccCCCCeeEEee----ccccccccCccC-CCEEEEecCC
Q 000500 670 FNAKNSSRFCFLLS----TRAGGLGINLAT-ADTVIIYDSD 705 (1460)
Q Consensus 670 Fn~~~s~~~vfLlS----TrAgg~GINL~~-Ad~VIi~Dsd 705 (1460)
|.++.. -+|++ |..+++|||++. .++||+||.|
T Consensus 371 Fr~G~~---~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 371 FAEGEI---DVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHcCCC---CEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 977443 37777 588999999998 7999999997
No 95
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=3e-12 Score=163.11 Aligned_cols=130 Identities=18% Similarity=0.215 Sum_probs=109.8
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeecc
Q 000500 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1460)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTr 685 (1460)
...|+..|.+.+..+...|..|||||..+...+.|..+|...|+++..++|. ..+|++.|..|... ...++|+|.
T Consensus 412 ~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~---~g~VtIATN 486 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGR---PGAVTIATN 486 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCC---CceEEEecc
Confidence 4568999999999988999999999999999999999999999999999996 67899999999543 335899999
Q ss_pred ccccccCccCC--------------------------------------CEEEEecCCCChhhHHHHHHhhcccCCCCce
Q 000500 686 AGGLGINLATA--------------------------------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (1460)
Q Consensus 686 Agg~GINL~~A--------------------------------------d~VIi~DsdWNP~~d~QAigRahRiGQ~k~V 727 (1460)
.+|+|+++.-. =+||.-..+=|-..+.|..||++|.|..-..
T Consensus 487 mAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss 566 (830)
T PRK12904 487 MAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 566 (830)
T ss_pred cccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCce
Confidence 99999998643 3788888899999999999999999998766
Q ss_pred EEEEEecCCCHHHHHHHH
Q 000500 728 MIFRLITRGSIEERMMQM 745 (1460)
Q Consensus 728 ~VyrLvt~~TiEE~I~e~ 745 (1460)
..|- |+|..++.+
T Consensus 567 ~f~l-----SleD~l~~~ 579 (830)
T PRK12904 567 RFYL-----SLEDDLMRI 579 (830)
T ss_pred eEEE-----EcCcHHHHh
Confidence 6443 345555543
No 96
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.48 E-value=2.1e-12 Score=147.14 Aligned_cols=313 Identities=19% Similarity=0.302 Sum_probs=207.5
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHH--HHHHH-----HhCCCC-cEEEEEcc-ccHHHHHHHHHHH
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA--FLASL-----FGERIS-PHLVVAPL-STLRNWEREFATW 355 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa--~l~~L-----~~~~~~-p~LIVvP~-sll~qW~~E~~kw 355 (1460)
+..|.|-++ |= ....|..+|-...+|.|||+.-|. ++... +....+ ..||++|. .|-.|-+-|..++
T Consensus 242 KPtPIqSQa--WP--I~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 242 KPTPIQSQA--WP--ILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCcchhcc--cc--eeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 355666554 42 225788999999999999976542 11111 122334 57888995 4445666776655
Q ss_pred C-CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hcccCCCcceEE
Q 000500 356 A-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCM 432 (1460)
Q Consensus 356 ~-P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d--~~~L~~i~w~~V 432 (1460)
. -+++.++++|.......+.+. ..+.+++|.|...+... ...+.--..-+|
T Consensus 318 syng~ksvc~ygggnR~eqie~l--------------------------krgveiiiatPgrlndL~~~n~i~l~siTYl 371 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGNRNEQIEDL--------------------------KRGVEIIIATPGRLNDLQMDNVINLASITYL 371 (629)
T ss_pred hhcCcceEEEecCCCchhHHHHH--------------------------hcCceEEeeCCchHhhhhhcCeeeeeeeEEE
Confidence 3 457777777766554444432 24678999999888642 223333345789
Q ss_pred EeccccccCC--cchHHHHHHHhccccceEee-ccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000500 433 IVDEGHRLKN--KDSKLFSSLKQYSTRHRVLL-TGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1460)
Q Consensus 433 IvDEAHrlKN--~~Sk~~~al~~l~~~~rLLL-TGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~ 509 (1460)
|+|||.++.. ...+..+.|..+...+...| |||- . ..+.+|
T Consensus 372 VlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATW-P----------------------------------~~VrrL- 415 (629)
T KOG0336|consen 372 VLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATW-P----------------------------------EGVRRL- 415 (629)
T ss_pred EecchhhhhcccccHHHHHHhhhcCCcceeeeecccC-c----------------------------------hHHHHH-
Confidence 9999999865 45688888888887765555 4552 0 111111
Q ss_pred HhhchhhhhhhhhhhhhcCCCceeEEEeec---CCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccc
Q 000500 510 RMLAPHLLRRVKKDVMKELPPKKELILRVE---LSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1460)
Q Consensus 510 ~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~---Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~ 586 (1460)
....+ |...+++|. |.. +|.
T Consensus 416 -----------a~sY~-----Kep~~v~vGsLdL~a--------------------------------------~~s--- 438 (629)
T KOG0336|consen 416 -----------AQSYL-----KEPMIVYVGSLDLVA--------------------------------------VKS--- 438 (629)
T ss_pred -----------HHHhh-----hCceEEEecccceee--------------------------------------eee---
Confidence 11111 011122221 100 000
Q ss_pred cCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Q 000500 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1460)
Q Consensus 587 ~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~ 666 (1460)
+...+ .....+.|+..+..++..+ ....|||||+....+.|-|..-|...|+...-++|.-...+|+.+
T Consensus 439 --VkQ~i--------~v~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~a 507 (629)
T KOG0336|consen 439 --VKQNI--------IVTTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMA 507 (629)
T ss_pred --eeeeE--------EecccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHH
Confidence 00000 0011234554444444443 457899999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCC
Q 000500 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1460)
Q Consensus 667 Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1460)
++.|. ++.+.+|++|..++.||+++...||+.||.+-|-..|.+++||.+|.|.+-.-. -|++.+
T Consensus 508 l~~~k---sG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~si--s~lt~~ 572 (629)
T KOG0336|consen 508 LEDFK---SGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSI--SFLTRN 572 (629)
T ss_pred HHhhh---cCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceE--EEEehh
Confidence 99995 577789999999999999999999999999999999999999999999775433 345544
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.48 E-value=1.9e-12 Score=164.33 Aligned_cols=118 Identities=17% Similarity=0.159 Sum_probs=102.4
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeecc
Q 000500 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1460)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTr 685 (1460)
...|+..|.+.+......|..|||||..+...+.|...|...|+++..++|.....++..+...|. .+ .++|+|.
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~---~g--~VtIATn 496 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQ---RG--AVTIATN 496 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCC---Cc--eEEEEec
Confidence 456889999999988899999999999999999999999999999999999987555555555443 23 3799999
Q ss_pred ccccccCcc---CCC-----EEEEecCCCChhhHHHHHHhhcccCCCCceE
Q 000500 686 AGGLGINLA---TAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1460)
Q Consensus 686 Agg~GINL~---~Ad-----~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~ 728 (1460)
.+|+|+++. .+. +||.++.+-|...+.|+.||++|.|..-...
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 999999995 566 9999999999999999999999999886654
No 98
>PRK14701 reverse gyrase; Provisional
Probab=99.48 E-value=4.3e-12 Score=173.45 Aligned_cols=336 Identities=16% Similarity=0.229 Sum_probs=187.5
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCC----C
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP----Q 358 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P----~ 358 (1460)
.++++.|..++..+ ..+++.++..+||+|||...+.++..+ .......|||+|+ .++.|....|..++. +
T Consensus 78 ~~pt~iQ~~~i~~i----l~G~d~li~APTGsGKTl~~~~~al~~-~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~ 152 (1638)
T PRK14701 78 FEFWSIQKTWAKRI----LRGKSFSIVAPTGMGKSTFGAFIALFL-ALKGKKCYIILPTTLLVKQTVEKIESFCEKANLD 152 (1638)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEEcCCCCHHHHHHHHHHHH-HhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCc
Confidence 45889999998766 567899999999999998433322222 2222379999996 777899999988764 3
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEecccc
Q 000500 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1460)
Q Consensus 359 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEAH 438 (1460)
.++..++|...........+. .....++|+|+|.+.+......+....+++|||||||
T Consensus 153 v~v~~~~g~~s~~e~~~~~~~----------------------l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD 210 (1638)
T PRK14701 153 VRLVYYHSNLRKKEKEEFLER----------------------IENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVD 210 (1638)
T ss_pred eeEEEEeCCCCHHHHHHHHHH----------------------HhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECce
Confidence 566778877554332111100 0123588999999988765443333678999999999
Q ss_pred ccCCcchHHHHHHHhccccceEeeccccccCCHHHHH-HHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhhh
Q 000500 439 RLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELF-MLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1460)
Q Consensus 439 rlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~-sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~L 517 (1460)
++-...-..-+.|. |-|- ..|+. ..+..+......+.. ...+.+..|...+.
T Consensus 211 ~ml~~~knid~~L~---------llGF-----~~e~~~~~~~il~~~~~~~~~---------~~~~~~~~l~~~~~---- 263 (1638)
T PRK14701 211 AFLKASKNIDRSLQ---------LLGF-----YEEIIEKAWKIIYLKKQGNIE---------DAMEKREILNKEIE---- 263 (1638)
T ss_pred eccccccccchhhh---------cCCC-----hHHHHHHHHHhhhcccccccc---------hhhhhhhhhhhhhh----
Confidence 98531100001111 0010 01111 011111100000000 00122333333221
Q ss_pred hhhhhhhhhcCCCceeEE--EeecCCHHHHHHHHHHHHHHHHHHHhc-CCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000500 518 RRVKKDVMKELPPKKELI--LRVELSSKQKEYYKAILTRNYQILTRR-GGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1460)
Q Consensus 518 RR~K~dv~~~LP~k~e~i--v~v~Ls~~Qk~~Y~~il~~~~~~l~~~-~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~ 594 (1460)
.+|...... ....+++... ...++.. .+.-. +..... ++.+ .|.|...
T Consensus 264 ---------~~~~~~~~ll~~SAT~~~r~~--~~~l~~~---~l~f~v~~~~~~-------lr~i-~~~yi~~------- 314 (1638)
T PRK14701 264 ---------KIGNKIGCLIVASATGKAKGD--RVKLYRE---LLGFEVGSGRSA-------LRNI-VDVYLNP------- 314 (1638)
T ss_pred ---------hcCCCccEEEEEecCCCchhH--HHHHhhc---CeEEEecCCCCC-------CCCc-EEEEEEC-------
Confidence 122222222 2233332111 1112111 00000 000000 0000 0111110
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhh---HHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHh
Q 000500 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM---LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1460)
Q Consensus 595 ~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~---LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn 671 (1460)
....| ..|..++..+ |..+|||++.... ++.|..+|...|+++..++|. |..++++|.
T Consensus 315 ----------~~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~ 375 (1638)
T PRK14701 315 ----------EKIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFE 375 (1638)
T ss_pred ----------CHHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHH
Confidence 01112 2445555543 6789999987664 589999999999999999984 899999998
Q ss_pred ccCCCCeeEEeecc----ccccccCccC-CCEEEEecCCC---ChhhHH-------------HHHHhhcccCCC
Q 000500 672 AKNSSRFCFLLSTR----AGGLGINLAT-ADTVIIYDSDW---NPHADL-------------QAMARAHRLGQT 724 (1460)
Q Consensus 672 ~~~s~~~vfLlSTr----Agg~GINL~~-Ad~VIi~DsdW---NP~~d~-------------QAigRahRiGQ~ 724 (1460)
++... +|++|. .+++|||++. ...||+||.|- |-..+. +..||++|-|..
T Consensus 376 ~G~~~---VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 376 EGEID---YLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred cCCCC---EEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 75544 788884 6889999998 99999999987 544444 445999998854
No 99
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.47 E-value=2.2e-12 Score=146.32 Aligned_cols=333 Identities=18% Similarity=0.260 Sum_probs=201.8
Q ss_pred CCcccccccCCCCCCCC------CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHH-HHHHHHHhCCCC-cEEE
Q 000500 267 KPKEFQQYEHSPEFLSG------GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERIS-PHLV 338 (1460)
Q Consensus 267 ~~~~~~~~~~~P~~~~g------~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~L~~~~~~-p~LI 338 (1460)
..+.|..+.-.|+.+.| ......|..++-.| +.....+.|-....|+|||.... +.|...-..... -.+.
T Consensus 88 S~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPll--l~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iC 165 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLL--LAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCIC 165 (477)
T ss_pred ccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchh--hcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCcee
Confidence 45667888777877765 23445677776654 23456777888899999996532 222221111122 3455
Q ss_pred EEcc-ccHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHH
Q 000500 339 VAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMI 417 (1460)
Q Consensus 339 VvP~-sll~qW~~E~~kw~P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l 417 (1460)
++|. .+..|-..-+.+...-..+..-+.-+..+. .+.....-+|+|-|..++
T Consensus 166 LaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~---------------------------~rG~~i~eqIviGTPGtv 218 (477)
T KOG0332|consen 166 LAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKA---------------------------KRGNKLTEQIVIGTPGTV 218 (477)
T ss_pred eCchHHHHHHHHHHHHHhcCceeeeEEEEecCccc---------------------------ccCCcchhheeeCCCccH
Confidence 6885 555665555554432112221111111100 011224567999999988
Q ss_pred HhhhcccCCC---cceEEEeccccccCCcch---HHHHHHHhcc-ccceEeeccccccCCHHHHHHHHHhhcCCCCCChH
Q 000500 418 NLDSASLKPI---KWQCMIVDEGHRLKNKDS---KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLE 490 (1460)
Q Consensus 418 ~~d~~~L~~i---~w~~VIvDEAHrlKN~~S---k~~~al~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~ 490 (1460)
..-...|+.+ ...++++|||..+-+... ...+..+.+. ....++.|+|-
T Consensus 219 ~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf------------------------ 274 (477)
T KOG0332|consen 219 LDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATF------------------------ 274 (477)
T ss_pred HHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechh------------------------
Confidence 7654443333 467899999998866442 2233333444 45567888873
Q ss_pred HHHHHHhhhhhHHHHHHHHHhh---chhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchh
Q 000500 491 EFQEEFKDINQEEQISRLHRML---APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQI 567 (1460)
Q Consensus 491 ~F~~~f~~~~~~~~i~~L~~~L---~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~ 567 (1460)
.+ ........++ .+.+|||.- + .|++..+..+-|.
T Consensus 275 --~e--------~V~~Fa~kivpn~n~i~Lk~ee--l--~L~~IkQlyv~C~---------------------------- 312 (477)
T KOG0332|consen 275 --VE--------KVAAFALKIVPNANVIILKREE--L--ALDNIKQLYVLCA---------------------------- 312 (477)
T ss_pred --HH--------HHHHHHHHhcCCCceeeeehhh--c--cccchhhheeecc----------------------------
Confidence 00 0001111111 111221110 0 1222222222211
Q ss_pred hHHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhc
Q 000500 568 SLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK 647 (1460)
Q Consensus 568 ~l~nil~~LRk~c~hP~L~~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~ 647 (1460)
+ ...|+.+|.. |-.+..-| ..||||+-......|...|...
T Consensus 313 --------------~-----------------------~~~K~~~l~~-lyg~~tig-qsiIFc~tk~ta~~l~~~m~~~ 353 (477)
T KOG0332|consen 313 --------------C-----------------------RDDKYQALVN-LYGLLTIG-QSIIFCHTKATAMWLYEEMRAE 353 (477)
T ss_pred --------------c-----------------------hhhHHHHHHH-HHhhhhhh-heEEEEeehhhHHHHHHHHHhc
Confidence 0 1235555555 33333334 5799999999999999999999
Q ss_pred CCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCC------ChhhHHHHHHhhccc
Q 000500 648 KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------NPHADLQAMARAHRL 721 (1460)
Q Consensus 648 g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdW------NP~~d~QAigRahRi 721 (1460)
|+.+..++|.+...+|..+|++|..+.+ -+|++|.++++||+.+..+.||.||.+- .|..|++|+||++|.
T Consensus 354 Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~---kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRF 430 (477)
T KOG0332|consen 354 GHQVSLLHGDLTVEQRAAIIDRFREGKE---KVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRF 430 (477)
T ss_pred CceeEEeeccchhHHHHHHHHHHhcCcc---eEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccc
Confidence 9999999999999999999999987554 4899999999999999999999999864 478999999999999
Q ss_pred CCCCceEEEEEe-cCCCH
Q 000500 722 GQTNKVMIFRLI-TRGSI 738 (1460)
Q Consensus 722 GQ~k~V~VyrLv-t~~Ti 738 (1460)
|.+- +.| .|+ .+++.
T Consensus 431 GkkG-~a~-n~v~~~~s~ 446 (477)
T KOG0332|consen 431 GKKG-LAI-NLVDDKDSM 446 (477)
T ss_pred cccc-eEE-EeecccCcH
Confidence 9643 333 344 34444
No 100
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.47 E-value=4e-12 Score=165.19 Aligned_cols=108 Identities=18% Similarity=0.181 Sum_probs=92.2
Q ss_pred CceEEEEecchhhHHHHHHHHHh---cCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEE
Q 000500 624 GHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1460)
Q Consensus 624 g~KVLIFSq~~~~LdiLed~L~~---~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VI 700 (1460)
+.++|||+......+.+...|.. .++.+..++|+++.++|.++++.|.. +...+||+|..+..||+++.+++||
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~---G~rkVlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQ---GRRKVVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhccc---CCeEEEEecchHhhcccccCceEEE
Confidence 56899999999999999998876 47899999999999999999999954 3455899999999999999999999
Q ss_pred EecCC----CChhh--------------HHHHHHhhcccCCCCceEEEEEecCCC
Q 000500 701 IYDSD----WNPHA--------------DLQAMARAHRLGQTNKVMIFRLITRGS 737 (1460)
Q Consensus 701 i~Dsd----WNP~~--------------d~QAigRahRiGQ~k~V~VyrLvt~~T 737 (1460)
.++.. |||.. ..||.||++|. ++-.+|+|+++..
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 98864 56654 67999999886 5778899998653
No 101
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.46 E-value=5.1e-12 Score=162.65 Aligned_cols=310 Identities=21% Similarity=0.229 Sum_probs=191.2
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHC-CCCeEE
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQMNVV 362 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~-P~l~vv 362 (1460)
+|.|.|.++|.-.. ..+.|+|++..||.|||+.|+..+..-..++.++.+-|||. ++..+=.++|.+|. -+++|.
T Consensus 31 el~~~qq~av~~~~---~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~ 107 (766)
T COG1204 31 ELFNPQQEAVEKGL---LSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVG 107 (766)
T ss_pred HhhHHHHHHhhccc---cCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEE
Confidence 79999999985332 33899999999999999999887777666666799999994 77788888888443 279999
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcc--cCCCcceEEEecccccc
Q 000500 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHRL 440 (1460)
Q Consensus 363 vy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~--L~~i~w~~VIvDEAHrl 440 (1460)
+++|+.+... .....++|+|||||.+-.-... .--...++|||||+|-+
T Consensus 108 ~~TgD~~~~~-----------------------------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l 158 (766)
T COG1204 108 ISTGDYDLDD-----------------------------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLL 158 (766)
T ss_pred EecCCcccch-----------------------------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeec
Confidence 9999876432 1235789999999988532111 11224689999999999
Q ss_pred CCc-chH----HHHHHHhccc-cceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhch
Q 000500 441 KNK-DSK----LFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1460)
Q Consensus 441 KN~-~Sk----~~~al~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p 514 (1460)
... ... ....++.+.. -..++||||- .|..|+...|+ ...+.+ ..+|
T Consensus 159 ~d~~RG~~lE~iv~r~~~~~~~~rivgLSATl--pN~~evA~wL~---a~~~~~----------------------~~rp 211 (766)
T COG1204 159 GDRTRGPVLESIVARMRRLNELIRIVGLSATL--PNAEEVADWLN---AKLVES----------------------DWRP 211 (766)
T ss_pred CCcccCceehhHHHHHHhhCcceEEEEEeeec--CCHHHHHHHhC---Cccccc----------------------CCCC
Confidence 765 211 1122222232 3568899994 34444443222 221100 0111
Q ss_pred hhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000500 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1460)
Q Consensus 515 ~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~ 594 (1460)
.-++| ..|.... ..... +...
T Consensus 212 ~~l~~-------~v~~~~~-~~~~~-----------------------~~~k---------------------------- 232 (766)
T COG1204 212 VPLRR-------GVPYVGA-FLGAD-----------------------GKKK---------------------------- 232 (766)
T ss_pred ccccc-------CCccceE-EEEec-----------------------Cccc----------------------------
Confidence 11111 0110000 00000 0000
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHh----c-----------------------
Q 000500 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----K----------------------- 647 (1460)
Q Consensus 595 ~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~----~----------------------- 647 (1460)
.....+...+..++....+.|..||||+...+........|.. .
T Consensus 233 ---------~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 303 (766)
T COG1204 233 ---------TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPT 303 (766)
T ss_pred ---------cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccc
Confidence 0011122233344445556677888888776654444444431 0
Q ss_pred ----------CCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEE-----ec-----CCCC
Q 000500 648 ----------KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-----YD-----SDWN 707 (1460)
Q Consensus 648 ----------g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi-----~D-----sdWN 707 (1460)
...+..-+..++.++|+-+-+.|++ +.+-+|++|-..+.|+||++ ++||| || -+-+
T Consensus 304 ~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~---g~ikVlv~TpTLA~GVNLPA-~~VIIk~~~~y~~~~g~~~i~ 379 (766)
T COG1204 304 SEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRK---GKIKVLVSTPTLAAGVNLPA-RTVIIKDTRRYDPKGGIVDIP 379 (766)
T ss_pred cchHHHHHHHHhCccccccCCCHHHHHHHHHHHhc---CCceEEEechHHhhhcCCcc-eEEEEeeeEEEcCCCCeEECc
Confidence 0123345667888999999999976 55669999999999999985 44544 55 3446
Q ss_pred hhhHHHHHHhhcccCCCC
Q 000500 708 PHADLQAMARAHRLGQTN 725 (1460)
Q Consensus 708 P~~d~QAigRahRiGQ~k 725 (1460)
+...+|.+|||+|.|=..
T Consensus 380 ~~dv~QM~GRAGRPg~d~ 397 (766)
T COG1204 380 VLDVLQMAGRAGRPGYDD 397 (766)
T ss_pred hhhHhhccCcCCCCCcCC
Confidence 788899999999998554
No 102
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.45 E-value=7.3e-11 Score=133.18 Aligned_cols=312 Identities=19% Similarity=0.232 Sum_probs=209.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCC
Q 000500 280 FLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ 358 (1460)
Q Consensus 280 ~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P~ 358 (1460)
..++|+|.|+|..+-+-|...+.+....|+..-+|.|||-+....+...++.+ +.+.|..|. .++-.-...+..-+++
T Consensus 92 L~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G-~~vciASPRvDVclEl~~Rlk~aF~~ 170 (441)
T COG4098 92 LQWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG-GRVCIASPRVDVCLELYPRLKQAFSN 170 (441)
T ss_pred eeeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC-CeEEEecCcccchHHHHHHHHHhhcc
Confidence 44679999999999999999999999999999999999988877777766654 489999994 6666667778888888
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEecccc
Q 000500 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1460)
Q Consensus 359 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEAH 438 (1460)
..+..++|.+.... ...=||-||++.++- .-.||++||||+.
T Consensus 171 ~~I~~Lyg~S~~~f--------------------------------r~plvVaTtHQLlrF------k~aFD~liIDEVD 212 (441)
T COG4098 171 CDIDLLYGDSDSYF--------------------------------RAPLVVATTHQLLRF------KQAFDLLIIDEVD 212 (441)
T ss_pred CCeeeEecCCchhc--------------------------------cccEEEEehHHHHHH------HhhccEEEEeccc
Confidence 99999998875421 112266677776652 2247999999999
Q ss_pred ccCC-cchHHHHHHHhcc--ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhch-
Q 000500 439 RLKN-KDSKLFSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP- 514 (1460)
Q Consensus 439 rlKN-~~Sk~~~al~~l~--~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p- 514 (1460)
-+-= .+-.+..+++.-. ....+.|||||-. +| .. +-++.-+.+
T Consensus 213 AFP~~~d~~L~~Av~~ark~~g~~IylTATp~k----~l------------------~r-----------~~~~g~~~~~ 259 (441)
T COG4098 213 AFPFSDDQSLQYAVKKARKKEGATIYLTATPTK----KL------------------ER-----------KILKGNLRIL 259 (441)
T ss_pred cccccCCHHHHHHHHHhhcccCceEEEecCChH----HH------------------HH-----------HhhhCCeeEe
Confidence 8732 2334555555443 3467999999921 00 00 000111111
Q ss_pred hhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000500 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1460)
Q Consensus 515 ~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~ 594 (1460)
.+-+|... +.||-....++. .. .
T Consensus 260 klp~RfH~---~pLpvPkf~w~~----~~----~---------------------------------------------- 282 (441)
T COG4098 260 KLPARFHG---KPLPVPKFVWIG----NW----N---------------------------------------------- 282 (441)
T ss_pred ecchhhcC---CCCCCCceEEec----cH----H----------------------------------------------
Confidence 11122221 123322222110 00 0
Q ss_pred cchHHHHHHHhhhhHHH-HHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecC-CCHHHHHHHHHHHhc
Q 000500 595 DTNESFKQLLESSGKLQ-LLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGK-VGGAERQIRIDRFNA 672 (1460)
Q Consensus 595 ~~~~~~~~lv~~SgKl~-~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs-~~~~eRq~~Id~Fn~ 672 (1460)
+.+ .-+|+. .|...|++-...|..||||...+.+++-+...|+. ++++..|..- .....|.+.+..|++
T Consensus 283 ------k~l--~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~-~~~~~~i~~Vhs~d~~R~EkV~~fR~ 353 (441)
T COG4098 283 ------KKL--QRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKK-KLPKETIASVHSEDQHRKEKVEAFRD 353 (441)
T ss_pred ------HHh--hhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHh-hCCccceeeeeccCccHHHHHHHHHc
Confidence 000 011222 35667777788899999999999999999998853 4555553322 223678999999976
Q ss_pred cCCCCeeEEeeccccccccCccCCCEEEEecCC--CChhhHHHHHHhhcccCCCC--ceEEEEE
Q 000500 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD--WNPHADLQAMARAHRLGQTN--KVMIFRL 732 (1460)
Q Consensus 673 ~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~Dsd--WNP~~d~QAigRahRiGQ~k--~V~VyrL 732 (1460)
+.+-+|++|..+..|+.++..|++++=.-. ++-+..+|.-||++|--..- .|..|++
T Consensus 354 ---G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 354 ---GKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred ---CceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 455699999999999999999999986555 89999999999999965543 4444443
No 103
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.45 E-value=2.3e-12 Score=151.81 Aligned_cols=361 Identities=18% Similarity=0.263 Sum_probs=215.5
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHH-HHHHHHHHHh-------------CCCCc-EEEEEcc-ccHHH
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFG-------------ERISP-HLVVAPL-STLRN 347 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiq-aIa~l~~L~~-------------~~~~p-~LIVvP~-sll~q 347 (1460)
|-.+|-++.++.- -........+|=|.|+|+|||+. .|-++..+.+ .++.| -|||+|. .+..|
T Consensus 200 gFs~Pt~IQsl~l-p~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~Q 278 (731)
T KOG0347|consen 200 GFSRPTEIQSLVL-PAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQ 278 (731)
T ss_pred CCCCCccchhhcc-cHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHH
Confidence 3455555554421 11112335677799999999986 4555553321 12222 6999996 66677
Q ss_pred HHHHHHHHC--CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----h
Q 000500 348 WEREFATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----S 421 (1460)
Q Consensus 348 W~~E~~kw~--P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d----~ 421 (1460)
-...|...+ +++.+..+.|.-.....-|-. ....+|||+|...+..- .
T Consensus 279 V~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL--------------------------~~~p~IVVATPGRlweli~e~n 332 (731)
T KOG0347|consen 279 VKQHLKAIAEKTQIRVASITGGLAVQKQQRLL--------------------------NQRPDIVVATPGRLWELIEEDN 332 (731)
T ss_pred HHHHHHHhccccCeEEEEeechhHHHHHHHHH--------------------------hcCCCEEEecchHHHHHHHhhh
Confidence 777777655 578888888886654432221 12578999999877432 2
Q ss_pred cccCCC-cceEEEecccccc--CCcchHHHHHHHhcc------ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHH
Q 000500 422 ASLKPI-KWQCMIVDEGHRL--KNKDSKLFSSLKQYS------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEF 492 (1460)
Q Consensus 422 ~~L~~i-~w~~VIvDEAHrl--KN~~Sk~~~al~~l~------~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F 492 (1460)
..+..+ +..++|||||.|+ +++-..+.+.|..+. -+.-+..|||-- +.++... ..
T Consensus 333 ~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt---------~~~~~~~------~~- 396 (731)
T KOG0347|consen 333 THLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLT---------LVLQQPL------SS- 396 (731)
T ss_pred hhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEee---------hhhcChh------HH-
Confidence 224333 3579999999998 455455566665554 123477888841 1110000 00
Q ss_pred HHHHhhhhhHHHHHHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHH
Q 000500 493 QEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINV 572 (1460)
Q Consensus 493 ~~~f~~~~~~~~i~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~ni 572 (1460)
..-........-+.+..+++..-+ .-+| ..+++++.+.-. ..
T Consensus 397 -~~k~~~k~~~~~~kiq~Lmk~ig~---------~~kp-----kiiD~t~q~~ta-----------------------~~ 438 (731)
T KOG0347|consen 397 -SRKKKDKEDELNAKIQHLMKKIGF---------RGKP-----KIIDLTPQSATA-----------------------ST 438 (731)
T ss_pred -hhhccchhhhhhHHHHHHHHHhCc---------cCCC-----eeEecCcchhHH-----------------------HH
Confidence 000000000111122222221111 1111 233444432211 11
Q ss_pred HHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEE
Q 000500 573 VMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYE 652 (1460)
Q Consensus 573 l~~LRk~c~hP~L~~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ 652 (1460)
+.+-+--| .| +- .+. .|.-+|. .--.|.||||+.++.+..|.-+|...+++..
T Consensus 439 l~Es~I~C-~~-~e----KD~------------------ylyYfl~---ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~ 491 (731)
T KOG0347|consen 439 LTESLIEC-PP-LE----KDL------------------YLYYFLT---RYPGRTLVFCNSIDCVKRLTVLLNNLDIPPL 491 (731)
T ss_pred HHHHhhcC-Cc-cc----cce------------------eEEEEEe---ecCCceEEEechHHHHHHHHHHHhhcCCCCc
Confidence 22222223 11 00 000 0000000 1123899999999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEE
Q 000500 653 RIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRL 732 (1460)
Q Consensus 653 ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrL 732 (1460)
.++.+|...+|-+.+++|.+..++ +||+|.++++||+++.++|||+|.-+-....|++|-||..|-+.. -|.| .|
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~---VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~-Gvsv-ml 566 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSG---VLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSE-GVSV-ML 566 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCe---EEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCC-CeEE-EE
Confidence 999999999999999999886665 899999999999999999999999999999999999999997643 2222 12
Q ss_pred ecCC---------------------CHHHHHHHHHHHHHHHHHHHh
Q 000500 733 ITRG---------------------SIEERMMQMTKKKMVLEHLVV 757 (1460)
Q Consensus 733 vt~~---------------------TiEE~I~e~a~~K~~L~~~Vi 757 (1460)
+... -|++.|+...+.+-.|++.+.
T Consensus 567 ~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei~ 612 (731)
T KOG0347|consen 567 CGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREID 612 (731)
T ss_pred eChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHHH
Confidence 2211 346666666666666666553
No 104
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.45 E-value=1.8e-11 Score=157.77 Aligned_cols=351 Identities=17% Similarity=0.233 Sum_probs=226.8
Q ss_pred CCCCHHHHHHHHHHHHhhhcCC--cEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHH-HHHHHHHHCCCCe
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN-WEREFATWAPQMN 360 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~--~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~q-W~~E~~kw~P~l~ 360 (1460)
.+-.|-|+.+++-++.=...++ .-+|+-++|.|||=+|+-.+-.....+ +-+.|+||+.+|.+ -.+.|..-+-++.
T Consensus 593 yeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G-KQVAvLVPTTlLA~QHy~tFkeRF~~fP 671 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG-KQVAVLVPTTLLAQQHYETFKERFAGFP 671 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC-CeEEEEcccHHhHHHHHHHHHHHhcCCC
Confidence 5678899999998876666555 358999999999988864332222222 57899999988854 4444544343555
Q ss_pred EEEE-----EcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEec
Q 000500 361 VVMY-----VGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1460)
Q Consensus 361 vvvy-----~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvD 435 (1460)
|-+- ...+..+..+... ..++.||||-|+..+.++..+- +-.+||||
T Consensus 672 V~I~~LSRF~s~kE~~~il~~l-------------------------a~G~vDIvIGTHrLL~kdv~Fk---dLGLlIID 723 (1139)
T COG1197 672 VRIEVLSRFRSAKEQKEILKGL-------------------------AEGKVDIVIGTHRLLSKDVKFK---DLGLLIID 723 (1139)
T ss_pred eeEEEecccCCHHHHHHHHHHH-------------------------hcCCccEEEechHhhCCCcEEe---cCCeEEEe
Confidence 5442 2333333333332 2468899999999998766543 34699999
Q ss_pred cccccCCcchHHHHHHHhcccc-ceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhch
Q 000500 436 EGHRLKNKDSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1460)
Q Consensus 436 EAHrlKN~~Sk~~~al~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p 514 (1460)
|=||+.= +.-..|+.++++ +.|-|||||+.-.+.= -+.+ +..|
T Consensus 724 EEqRFGV---k~KEkLK~Lr~~VDvLTLSATPIPRTL~M-------sm~G--------------------iRdl------ 767 (1139)
T COG1197 724 EEQRFGV---KHKEKLKELRANVDVLTLSATPIPRTLNM-------SLSG--------------------IRDL------ 767 (1139)
T ss_pred chhhcCc---cHHHHHHHHhccCcEEEeeCCCCcchHHH-------HHhc--------------------chhh------
Confidence 9999853 334566777654 7889999998776421 0000 0000
Q ss_pred hhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000500 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1460)
Q Consensus 515 ~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~ 594 (1460)
.+. .-||.....|..-..+..-.+.+
T Consensus 768 --------SvI-~TPP~~R~pV~T~V~~~d~~~ir--------------------------------------------- 793 (1139)
T COG1197 768 --------SVI-ATPPEDRLPVKTFVSEYDDLLIR--------------------------------------------- 793 (1139)
T ss_pred --------hhc-cCCCCCCcceEEEEecCChHHHH---------------------------------------------
Confidence 011 34555444443322221111111
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhc--CCeEEEEecCCCHHHHHHHHHHHhc
Q 000500 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNA 672 (1460)
Q Consensus 595 ~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~--g~~~~ridGs~~~~eRq~~Id~Fn~ 672 (1460)
..+++++ .+|..|-...+.+..+.-+...|+.. ..++...+|.|+..+-+.++..|.+
T Consensus 794 -------------------eAI~REl-~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~ 853 (1139)
T COG1197 794 -------------------EAILREL-LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN 853 (1139)
T ss_pred -------------------HHHHHHH-hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHc
Confidence 1123333 34557777777778788888888653 5678899999999999999999987
Q ss_pred cCCCCeeEEeeccccccccCccCCCEEEEecCC-CChhhHHHHHHhhcccCCCCceEEEEEecCCCHHHHHHHHHHHHHH
Q 000500 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMV 751 (1460)
Q Consensus 673 ~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~Dsd-WNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~a~~K~~ 751 (1460)
... -+||||.....||++++|||+||-+.| +--++.-|--||++|- .+.-+.|.|+-.+ ..|-+.+.+++.
T Consensus 854 g~~---dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS--~~~AYAYfl~p~~---k~lT~~A~kRL~ 925 (1139)
T COG1197 854 GEY---DVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRS--NKQAYAYFLYPPQ---KALTEDAEKRLE 925 (1139)
T ss_pred CCC---CEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCc--cceEEEEEeecCc---cccCHHHHHHHH
Confidence 554 499999999999999999999999887 7788899999999994 4567777777643 234455666555
Q ss_pred HHHHHh--ccccccCCCHHHHHHHHHhchhhhhcccC
Q 000500 752 LEHLVV--GRLKAQNINQEELDDIIRYGSKELFADEN 786 (1460)
Q Consensus 752 L~~~Vi--g~~~~~~~~~~el~~ll~~ga~~lf~~~~ 786 (1460)
.....- |.. -.+ -+.||=--|+-.|++++.
T Consensus 926 aI~~~~~LGaG--f~l---A~~DLeIRGaGNlLG~eQ 957 (1139)
T COG1197 926 AIASFTELGAG--FKL---AMHDLEIRGAGNLLGEEQ 957 (1139)
T ss_pred HHHhhhhcCch--HHH---HhcchhccccccccCccc
Confidence 444432 221 111 133333457777776543
No 105
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.44 E-value=2.9e-13 Score=150.25 Aligned_cols=287 Identities=18% Similarity=0.240 Sum_probs=190.6
Q ss_pred CCcEEEEecCCCCcHHHH-HHHHHHHHhCCCC-cEEEEEcccc----HHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHh
Q 000500 304 QTHVILADEMGLGKTIQS-IAFLASLFGERIS-PHLVVAPLST----LRNWEREFATWAPQMNVVMYVGTSQARNIIREY 377 (1460)
Q Consensus 304 ~~~~ILADemGLGKTiqa-Ia~l~~L~~~~~~-p~LIVvP~sl----l~qW~~E~~kw~P~l~vvvy~G~~~~r~~i~~~ 377 (1460)
|+..+.-.--|+|||-.. |-.|..+-..... -.+|+||.-- .+|-..++.++. ++.+.+-.|...-|.-|...
T Consensus 122 GrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~Rl 200 (459)
T KOG0326|consen 122 GRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMRL 200 (459)
T ss_pred chhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhccc-CeEEEEecCCcccccceeee
Confidence 344444456799999653 3333333222222 6799999532 367788888888 58888888887665433211
Q ss_pred hhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcceEEEeccccccCCcc--hHHHHHHHh
Q 000500 378 EFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGHRLKNKD--SKLFSSLKQ 453 (1460)
Q Consensus 378 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~--~~L~~i~w~~VIvDEAHrlKN~~--Sk~~~al~~ 453 (1460)
....|++|.|...+..-. ..-.--+...+|+|||..+-+.. ....+.+.-
T Consensus 201 --------------------------~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~ 254 (459)
T KOG0326|consen 201 --------------------------NQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISF 254 (459)
T ss_pred --------------------------cCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHh
Confidence 235789999998875421 11112245689999999886543 223333333
Q ss_pred cc-ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhhhhhhhhhhhhcCCCce
Q 000500 454 YS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKK 532 (1460)
Q Consensus 454 l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~LRR~K~dv~~~LP~k~ 532 (1460)
+. .+..+|.|||-- . ....|...| +++
T Consensus 255 lP~~rQillySATFP-~------------------tVk~Fm~~~-----------------------l~k---------- 282 (459)
T KOG0326|consen 255 LPKERQILLYSATFP-L------------------TVKGFMDRH-----------------------LKK---------- 282 (459)
T ss_pred CCccceeeEEecccc-h------------------hHHHHHHHh-----------------------ccC----------
Confidence 33 344566777720 0 111222111 111
Q ss_pred eEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHH
Q 000500 533 ELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQL 612 (1460)
Q Consensus 533 e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~~~~~~~~~lv~~SgKl~~ 612 (1460)
||.+.-.++-....-..+-..+..+.|+..
T Consensus 283 --------------------------------------------------Py~INLM~eLtl~GvtQyYafV~e~qKvhC 312 (459)
T KOG0326|consen 283 --------------------------------------------------PYEINLMEELTLKGVTQYYAFVEERQKVHC 312 (459)
T ss_pred --------------------------------------------------cceeehhhhhhhcchhhheeeechhhhhhh
Confidence 111110000000000111233456678888
Q ss_pred HHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccC
Q 000500 613 LDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGIN 692 (1460)
Q Consensus 613 L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GIN 692 (1460)
|.-|+.+|.= ...||||+.+.-.++|+..+...||+...|+..|..+.|.....+|.++. ..-|++|...-.||+
T Consensus 313 LntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~---crnLVctDL~TRGID 387 (459)
T KOG0326|consen 313 LNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGK---CRNLVCTDLFTRGID 387 (459)
T ss_pred HHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccc---cceeeehhhhhcccc
Confidence 8888888743 36899999999999999999999999999999999999999999998743 347999999999999
Q ss_pred ccCCCEEEEecCCCChhhHHHHHHhhcccCCC
Q 000500 693 LATADTVIIYDSDWNPHADLQAMARAHRLGQT 724 (1460)
Q Consensus 693 L~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~ 724 (1460)
+++.++||.||.+-|+..|+.++||.+|.|--
T Consensus 388 iqavNvVINFDfpk~aEtYLHRIGRsGRFGhl 419 (459)
T KOG0326|consen 388 IQAVNVVINFDFPKNAETYLHRIGRSGRFGHL 419 (459)
T ss_pred cceeeEEEecCCCCCHHHHHHHccCCccCCCc
Confidence 99999999999999999999999999999964
No 106
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.44 E-value=1.9e-13 Score=127.26 Aligned_cols=78 Identities=35% Similarity=0.570 Sum_probs=73.7
Q ss_pred HHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhccc
Q 000500 642 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1460)
Q Consensus 642 d~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRi 721 (1460)
.+|+..|+++..++|.++..+|+.+++.|+.... .+|++|.++++|||++.+++||+++++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI---RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS---SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc---eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 3688999999999999999999999999998655 4899999999999999999999999999999999999999998
Q ss_pred C
Q 000500 722 G 722 (1460)
Q Consensus 722 G 722 (1460)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
No 107
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.43 E-value=1.1e-11 Score=157.76 Aligned_cols=130 Identities=20% Similarity=0.239 Sum_probs=111.2
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeecc
Q 000500 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1460)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTr 685 (1460)
...|+..+.+-+..+.+.|..|||||..+...+.|..+|...|+++..+++.....+|..+.+.|+.+. ++|+|.
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-----VtIATn 505 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-----VTIATN 505 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-----EEEecC
Confidence 467888999999999999999999999999999999999999999999999999999999999986532 799999
Q ss_pred ccccccCccC-------------------------------------CCEEEEecCCCChhhHHHHHHhhcccCCCCceE
Q 000500 686 AGGLGINLAT-------------------------------------ADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1460)
Q Consensus 686 Agg~GINL~~-------------------------------------Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~ 728 (1460)
.+|.|+++.- .=+||.-...=|-..+.|..||++|.|..-...
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 9999999862 237899899999999999999999999876555
Q ss_pred EEEEecCCCHHHHHHHH
Q 000500 729 IFRLITRGSIEERMMQM 745 (1460)
Q Consensus 729 VyrLvt~~TiEE~I~e~ 745 (1460)
.|- |+|..++.+
T Consensus 586 f~l-----SlED~L~r~ 597 (908)
T PRK13107 586 FYL-----SMEDSLMRI 597 (908)
T ss_pred EEE-----EeCcHHHHH
Confidence 432 345555543
No 108
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.41 E-value=3.1e-12 Score=137.87 Aligned_cols=156 Identities=28% Similarity=0.351 Sum_probs=111.2
Q ss_pred CCCCCHHHHHHHHHHHHhhhcC-CcEEEEecCCCCcHHHHHHHHHHHHhCC-CCcEEEEEc-cccHHHHHHHHHHHCCCC
Q 000500 283 GGSLHPYQLEGLNFLRFSWSKQ-THVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWEREFATWAPQM 359 (1460)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~-~~~ILADemGLGKTiqaIa~l~~L~~~~-~~p~LIVvP-~sll~qW~~E~~kw~P~l 359 (1460)
..+++++|.+++..+. .. .++++..++|+|||..++.++....... ..++||++| ..+..+|..++..+.+..
T Consensus 6 ~~~~~~~Q~~~~~~~~----~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEALL----SGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHHH----cCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 4679999999998873 44 8899999999999998777777665543 459999999 577899999999988662
Q ss_pred ---eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcc--cCCCcceEEEe
Q 000500 360 ---NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIV 434 (1460)
Q Consensus 360 ---~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~--L~~i~w~~VIv 434 (1460)
....+.+... ...+... .....+++++||+.+...... +....|+++|+
T Consensus 82 ~~~~~~~~~~~~~-~~~~~~~-------------------------~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIi 135 (201)
T smart00487 82 GLKVVGLYGGDSK-REQLRKL-------------------------ESGKTDILVTTPGRLLDLLENDLLELSNVDLVIL 135 (201)
T ss_pred CeEEEEEeCCcch-HHHHHHH-------------------------hcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEE
Confidence 3334444332 2222111 012238999999998876554 44557889999
Q ss_pred ccccccCC-cch-HHHHHHHhc-cccceEeecccccc
Q 000500 435 DEGHRLKN-KDS-KLFSSLKQY-STRHRVLLTGTPLQ 468 (1460)
Q Consensus 435 DEAHrlKN-~~S-k~~~al~~l-~~~~rLLLTGTPlq 468 (1460)
||+|.+.+ ... .....+..+ ...+++++||||..
T Consensus 136 DE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~ 172 (201)
T smart00487 136 DEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPE 172 (201)
T ss_pred ECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCch
Confidence 99999985 333 333344444 46788999999963
No 109
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.38 E-value=2.1e-11 Score=158.86 Aligned_cols=110 Identities=17% Similarity=0.175 Sum_probs=92.3
Q ss_pred cCceEEEEecchhhHHHHHHHHHh---cCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEE
Q 000500 623 QGHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1460)
Q Consensus 623 ~g~KVLIFSq~~~~LdiLed~L~~---~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~V 699 (1460)
.+..+|||+.....++.+.+.|.. .++.+..++|+++..+|+.++..|.. +...+|++|..+..||++..+++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~---G~rkVlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA---GRRKVVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC---CCeEEEEecchHHhcccccCceEE
Confidence 356899999999999999999976 57889999999999999999988854 455689999999999999999999
Q ss_pred EEecCC----CChh--------------hHHHHHHhhcccCCCCceEEEEEecCCCH
Q 000500 700 IIYDSD----WNPH--------------ADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (1460)
Q Consensus 700 Ii~Dsd----WNP~--------------~d~QAigRahRiGQ~k~V~VyrLvt~~Ti 738 (1460)
|.++.. |+|. ...||.||++|. .+-.+|+|+++...
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 996654 3333 578888888886 48889999987654
No 110
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.38 E-value=1.7e-11 Score=145.21 Aligned_cols=315 Identities=19% Similarity=0.237 Sum_probs=205.4
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHH-HHHHHHHHhCCCCcEEEEEccccHH-HHHHHHHHHCCC--C
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPLSTLR-NWEREFATWAPQ--M 359 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~L~~~~~~p~LIVvP~sll~-qW~~E~~kw~P~--l 359 (1460)
.+|.|-|.-+|.- .+-.|.+-++...+++|||+++ +|-+-.+... .+.+|.+||+-.+. |=.++|..-+.. +
T Consensus 215 ~eLlPVQ~laVe~---GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-g~KmlfLvPLVALANQKy~dF~~rYs~Lgl 290 (830)
T COG1202 215 EELLPVQVLAVEA---GLLEGENLLVVSATASGKTLIGELAGIPRLLSG-GKKMLFLVPLVALANQKYEDFKERYSKLGL 290 (830)
T ss_pred ceecchhhhhhhh---ccccCCceEEEeccCCCcchHHHhhCcHHHHhC-CCeEEEEehhHHhhcchHHHHHHHhhcccc
Confidence 4699999999853 2368899999999999999876 5555555443 35899999986654 455667655433 4
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh---cccCCCcceEEEecc
Q 000500 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCMIVDE 436 (1460)
Q Consensus 360 ~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~---~~L~~i~w~~VIvDE 436 (1460)
.+.+-.|...-+ ..+ + . .......+.||+|-||+-+.--. ..+. +...|||||
T Consensus 291 kvairVG~srIk----~~~---------------~-p--v~~~t~~dADIIVGTYEGiD~lLRtg~~lg--diGtVVIDE 346 (830)
T COG1202 291 KVAIRVGMSRIK----TRE---------------E-P--VVVDTSPDADIIVGTYEGIDYLLRTGKDLG--DIGTVVIDE 346 (830)
T ss_pred eEEEEechhhhc----ccC---------------C-c--cccCCCCCCcEEEeechhHHHHHHcCCccc--ccceEEeee
Confidence 444555544221 110 0 0 01123467899999999874321 2233 457899999
Q ss_pred ccccCCc--chH---HHHHHHhcc-ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHH
Q 000500 437 GHRLKNK--DSK---LFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1460)
Q Consensus 437 AHrlKN~--~Sk---~~~al~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~ 510 (1460)
.|.|... ... +...|+.+. ....+.||||- .|+.||...|..-
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA~~l~a~----------------------------- 395 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATV--GNPEELAKKLGAK----------------------------- 395 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeec--CChHHHHHHhCCe-----------------------------
Confidence 9999762 222 233334333 35678999995 5555555433210
Q ss_pred hhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCC
Q 000500 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1460)
Q Consensus 511 ~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e 590 (1460)
| +..- .---|...+.+.+.=
T Consensus 396 -l----V~y~-----~RPVplErHlvf~~~-------------------------------------------------- 415 (830)
T COG1202 396 -L----VLYD-----ERPVPLERHLVFARN-------------------------------------------------- 415 (830)
T ss_pred -e----Eeec-----CCCCChhHeeeeecC--------------------------------------------------
Confidence 0 0000 000122222332221
Q ss_pred CCcccchHHHHHHHhhhhHHHHHHHHHHHHH----HcC--ceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHH
Q 000500 591 PDIEDTNESFKQLLESSGKLQLLDKMMVKLK----EQG--HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ 664 (1460)
Q Consensus 591 ~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~----~~g--~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq 664 (1460)
.+.|..++.+|.+.-. ..| ..+|||+...+-...|+++|..+|++..-++++++..+|+
T Consensus 416 ---------------e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk 480 (830)
T COG1202 416 ---------------ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERK 480 (830)
T ss_pred ---------------chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHH
Confidence 1112222222222211 112 3689999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCeeEEeeccccccccCccCCCEEEE----ec-CCCChhhHHHHHHhhcccCCCCceEEEEEecCC
Q 000500 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YD-SDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1460)
Q Consensus 665 ~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi----~D-sdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1460)
.+-..|.+. ....+++|.|.|-|+++++. .||| +. -|-+|+.+.|..|||+|.+=...-.||-++-.|
T Consensus 481 ~vE~~F~~q---~l~~VVTTAAL~AGVDFPAS-QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 481 SVERAFAAQ---ELAAVVTTAALAAGVDFPAS-QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHHHHHhcC---CcceEeehhhhhcCCCCchH-HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 999999764 44588999999999999854 4443 23 356999999999999999988888888888665
No 111
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.38 E-value=3.4e-11 Score=139.23 Aligned_cols=118 Identities=15% Similarity=0.160 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeecc--
Q 000500 608 GKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR-- 685 (1460)
Q Consensus 608 gKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTr-- 685 (1460)
.|+.++.-||+--.= ..|.|||.+.++..-.|.-+|+.-|++.|.+.|.++..-|.-+|++||++ -+-++|+|.
T Consensus 253 DKflllyallKL~LI-~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG---~YdivIAtD~s 328 (569)
T KOG0346|consen 253 DKFLLLYALLKLRLI-RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKG---LYDIVIATDDS 328 (569)
T ss_pred hhHHHHHHHHHHHHh-cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCc---ceeEEEEccCc
Confidence 466666666653222 34899999999999999999999999999999999999999999999974 344677776
Q ss_pred ------------------------c---------cccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEE
Q 000500 686 ------------------------A---------GGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1460)
Q Consensus 686 ------------------------A---------gg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~V 729 (1460)
+ .+.||+++.+++||.||.|-++..|++|+||..|-|.+-.+.-
T Consensus 329 ~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalS 405 (569)
T KOG0346|consen 329 ADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALS 405 (569)
T ss_pred cchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEE
Confidence 1 2579999999999999999999999999999999887665554
No 112
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.37 E-value=2.4e-10 Score=145.90 Aligned_cols=132 Identities=18% Similarity=0.200 Sum_probs=110.9
Q ss_pred hhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccc
Q 000500 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1460)
Q Consensus 607 SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrA 686 (1460)
.+++..|.+-|......|.+||||+.....++.|.++|...|+++..++|.++..+|.+++..|.. +.+.+|++|..
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~---G~i~VLV~t~~ 501 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL---GEFDVLVGINL 501 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc---CCceEEEEcCh
Confidence 457777888888888889999999999999999999999999999999999999999999999965 45668999999
Q ss_pred cccccCccCCCEEEEec-----CCCChhhHHHHHHhhcccCCCCceEEEEEecCCC--HHHHHHH
Q 000500 687 GGLGINLATADTVIIYD-----SDWNPHADLQAMARAHRLGQTNKVMIFRLITRGS--IEERMMQ 744 (1460)
Q Consensus 687 gg~GINL~~Ad~VIi~D-----sdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~T--iEE~I~e 744 (1460)
+++|++++.+++||++| .+-+...++|++||++|.. . -.++.|+...| +...|.+
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~--G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-N--GKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-C--CEEEEEEcCCCHHHHHHHHH
Confidence 99999999999999999 4557889999999999973 2 33555555444 4444444
No 113
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.36 E-value=5.9e-12 Score=127.71 Aligned_cols=136 Identities=25% Similarity=0.297 Sum_probs=99.5
Q ss_pred CcEEEEecCCCCcHHHHHHHHHHHHhC-CCCcEEEEEccccH-HHHHHHHHHHCC-CCeEEEEEcChhHHHHHHHhhhcC
Q 000500 305 THVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTL-RNWEREFATWAP-QMNVVMYVGTSQARNIIREYEFYF 381 (1460)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L~~~-~~~p~LIVvP~sll-~qW~~E~~kw~P-~l~vvvy~G~~~~r~~i~~~e~~~ 381 (1460)
+++++..++|+|||.+++.++..+... ..+++||+||...+ .+|...+..|.. ...+.++++..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKL----- 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHH-----
Confidence 368999999999999999999988765 44599999997655 555677777775 4667777766544332211
Q ss_pred CCCchhhhccccCccccccccccccccEEEecHHHHHhhhccc--CCCcceEEEeccccccCCcchHHH---HHHHhccc
Q 000500 382 PKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASL--KPIKWQCMIVDEGHRLKNKDSKLF---SSLKQYST 456 (1460)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L--~~i~w~~VIvDEAHrlKN~~Sk~~---~al~~l~~ 456 (1460)
.....+++++||+.+....... ....|++|||||+|.+.+...... ........
T Consensus 76 ---------------------~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~ 134 (144)
T cd00046 76 ---------------------LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKD 134 (144)
T ss_pred ---------------------hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCcc
Confidence 1246789999999887654432 344789999999999988765543 33444567
Q ss_pred cceEeecccc
Q 000500 457 RHRVLLTGTP 466 (1460)
Q Consensus 457 ~~rLLLTGTP 466 (1460)
..++++||||
T Consensus 135 ~~~i~~saTp 144 (144)
T cd00046 135 RQVLLLSATP 144 (144)
T ss_pred ceEEEEeccC
Confidence 7899999998
No 114
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.34 E-value=2.2e-11 Score=154.32 Aligned_cols=123 Identities=20% Similarity=0.253 Sum_probs=108.6
Q ss_pred hhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccc
Q 000500 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1460)
Q Consensus 607 SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrA 686 (1460)
..|+.-|..||....+ .-++|||++...-+|.|.+-|...||....++|.++..+|...|.+|.+. .+.+|+.|..
T Consensus 597 ~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~---~~~LLvaTsv 672 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNG---VVNLLVATSV 672 (997)
T ss_pred hHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhcc---CceEEEehhh
Confidence 4577788888887766 55999999999999999999999999999999999999999999999764 4459999999
Q ss_pred cccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecC
Q 000500 687 GGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1460)
Q Consensus 687 gg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~ 735 (1460)
.+.||++.....||+||.+-....+..|.||++|.|.+- .-|-|++.
T Consensus 673 varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 673 VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 999999999999999999988888999999999988777 55566665
No 115
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.33 E-value=1e-10 Score=149.45 Aligned_cols=118 Identities=16% Similarity=0.204 Sum_probs=103.5
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeecc
Q 000500 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1460)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTr 685 (1460)
...|+..|.+.+..+...|..|||||+.+...+.|..+|...|+++..|++ ...+|++.|..|... ...++|+|.
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~---~g~VtIATN 654 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQ---KGAVTIATN 654 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCC---CCeEEEecc
Confidence 456999999999999999999999999999999999999999999999997 577999999999543 335899999
Q ss_pred ccccccCccCCC--------EEEEecCCCChhhHHHHHHhhcccCCCCceE
Q 000500 686 AGGLGINLATAD--------TVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1460)
Q Consensus 686 Agg~GINL~~Ad--------~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~ 728 (1460)
.+|+|+++.-.+ +||.++.+-+...+.|++||++|.|..-...
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ 705 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESV 705 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceE
Confidence 999999998443 4488888999999999999999999876553
No 116
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.33 E-value=2.8e-11 Score=156.94 Aligned_cols=314 Identities=15% Similarity=0.154 Sum_probs=215.0
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEE
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P~l~vv 362 (1460)
...||-|.++|+-. ..|+.+++-..+|-||++.-- |=.++ -.+-+|||.|+ ||+..-..-+.. .++...
T Consensus 263 ~~FR~~Q~eaI~~~----l~Gkd~fvlmpTG~GKSLCYQ--lPA~l--~~gitvVISPL~SLm~DQv~~L~~--~~I~a~ 332 (941)
T KOG0351|consen 263 KGFRPNQLEAINAT----LSGKDCFVLMPTGGGKSLCYQ--LPALL--LGGVTVVISPLISLMQDQVTHLSK--KGIPAC 332 (941)
T ss_pred ccCChhHHHHHHHH----HcCCceEEEeecCCceeeEee--ccccc--cCCceEEeccHHHHHHHHHHhhhh--cCccee
Confidence 46999999999743 688999999999999997531 00011 12378999996 777665555532 356777
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhccc---CC-C---cceEEEec
Q 000500 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASL---KP-I---KWQCMIVD 435 (1460)
Q Consensus 363 vy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L---~~-i---~w~~VIvD 435 (1460)
.+.+..........+... .......+++-.|.|.+......+ .. . .-.++|||
T Consensus 333 ~L~s~q~~~~~~~i~q~l--------------------~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vID 392 (941)
T KOG0351|consen 333 FLSSIQTAAERLAILQKL--------------------ANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVID 392 (941)
T ss_pred eccccccHHHHHHHHHHH--------------------hCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEec
Confidence 777766655433332211 011246789999999987643222 11 1 25789999
Q ss_pred cccccCCcc-------hHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000500 436 EGHRLKNKD-------SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1460)
Q Consensus 436 EAHrlKN~~-------Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L 508 (1460)
|||...... .++......+..--.+.||||--..--.++...|++-+|..|.+.
T Consensus 393 EAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s------------------- 453 (941)
T KOG0351|consen 393 EAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS------------------- 453 (941)
T ss_pred HHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc-------------------
Confidence 999886533 233333333444457899999765666666666666555533211
Q ss_pred HHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000500 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1460)
Q Consensus 509 ~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~ 588 (1460)
..++.-.+-|....+ ...+..++...+.
T Consensus 454 ------------------fnR~NL~yeV~~k~~------------------------~~~~~~~~~~~~~---------- 481 (941)
T KOG0351|consen 454 ------------------FNRPNLKYEVSPKTD------------------------KDALLDILEESKL---------- 481 (941)
T ss_pred ------------------CCCCCceEEEEeccC------------------------ccchHHHHHHhhh----------
Confidence 112222222222221 1111122222211
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHH
Q 000500 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1460)
Q Consensus 589 ~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id 668 (1460)
...+.-.||||....+.+.+...|...|++...|+++++..+|+.+-.
T Consensus 482 --------------------------------~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~ 529 (941)
T KOG0351|consen 482 --------------------------------RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQK 529 (941)
T ss_pred --------------------------------cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHH
Confidence 224567899999999999999999999999999999999999999999
Q ss_pred HHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEe
Q 000500 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 733 (1460)
Q Consensus 669 ~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLv 733 (1460)
.|..+. +.+++.|=|.|.|||-+++..||+|..+-+-.-|-|..|||+|-|+...+..|+=.
T Consensus 530 ~w~~~~---~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~ 591 (941)
T KOG0351|consen 530 AWMSDK---IRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGY 591 (941)
T ss_pred HHhcCC---CeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecch
Confidence 998744 56899999999999999999999999999999999999999999999877765544
No 117
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.33 E-value=3e-11 Score=144.97 Aligned_cols=122 Identities=23% Similarity=0.329 Sum_probs=104.2
Q ss_pred hhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHH-HhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeecc
Q 000500 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL-TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1460)
Q Consensus 607 SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L-~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTr 685 (1460)
-+|+..+..++.... .-.+|||.|...-..-|-..| ...++.+..|+|..+..+|.+.+++|.. +.+-+|++|.
T Consensus 372 ~~K~lA~rq~v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~---g~IwvLicTd 446 (593)
T KOG0344|consen 372 KGKLLALRQLVASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI---GKIWVLICTD 446 (593)
T ss_pred hhHHHHHHHHHhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc---cCeeEEEehh
Confidence 457777777776643 348999999999888888888 7889999999999999999999999976 4556899999
Q ss_pred ccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecC
Q 000500 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1460)
Q Consensus 686 Agg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~ 735 (1460)
..+.||++..++.||+||.+-.-..++.++||.+|-|+.-.. |-|+++
T Consensus 447 ll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~A--itfytd 494 (593)
T KOG0344|consen 447 LLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKA--ITFYTD 494 (593)
T ss_pred hhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcce--EEEecc
Confidence 999999999999999999999999999999999999987543 334454
No 118
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.32 E-value=1.3e-09 Score=140.10 Aligned_cols=124 Identities=21% Similarity=0.243 Sum_probs=107.6
Q ss_pred hhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccc
Q 000500 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1460)
Q Consensus 607 SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrA 686 (1460)
.+++..|...|......|.+|||||.....++.|..+|...|+++..++|.++..+|..++..|.. +.+.+|++|..
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~---g~i~vlV~t~~ 505 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRL---GEFDVLVGINL 505 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHc---CCceEEEEeCH
Confidence 456777888888888889999999999999999999999999999999999999999999999965 34568999999
Q ss_pred cccccCccCCCEEEEecCC-----CChhhHHHHHHhhcccCCCCceEEEEEecCC
Q 000500 687 GGLGINLATADTVIIYDSD-----WNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1460)
Q Consensus 687 gg~GINL~~Ad~VIi~Dsd-----WNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1460)
++.|++++.+++||++|.+ -++..++|++||++|- . .-.++.|++..
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~~ 557 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADKI 557 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecCC
Confidence 9999999999999999974 5889999999999994 2 33455666643
No 119
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=99.31 E-value=9e-14 Score=138.61 Aligned_cols=98 Identities=26% Similarity=0.368 Sum_probs=74.5
Q ss_pred CCCccCCCCcCcchhhHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCCCCccChHHHHHHHHHHHHhcc--
Q 000500 1024 SPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKHGY-- 1101 (1460)
Q Consensus 1024 ~e~~~d~i~k~~~k~~~vl~Ri~~~~ll~~Kv~~~~~~p~~~~~~~~l~~~y~~~~~~~~w~~eeD~~LL~gi~k~Gy-- 1101 (1460)
|++++..|++|+.|++.. ...+.+|++||+.|. +| + .+|.++||++++++.|++++||||||++|+|||
T Consensus 1 ~ek~i~~IE~gE~k~~k~---~~~~~~l~~Kv~~~~-~P---~--~~L~i~y~~~~~~k~yseeEDRfLl~~~~~~G~~~ 71 (118)
T PF09111_consen 1 WEKIIKRIEKGEKKIEKR---KEQQEALRKKVEQYK-NP---W--QELKINYPPNNKKKVYSEEEDRFLLCMLYKYGYDA 71 (118)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCC-S-SH---H--HH---SSTSTSS-SSS-HHHHHHHHHHHHHHTTTS
T ss_pred ChHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcc-CC---H--HHCeeccCCCCCCCCcCcHHHHHHHHHHHHhCCCC
Confidence 345667888888877664 456899999999997 56 5 678999998888999999999999999999999
Q ss_pred -chhHHhhhCc--------ccchHHHHHHhhcCCCCCC
Q 000500 1102 -GRWQAIVDDK--------DLKVQEVICQELNLPFINL 1130 (1460)
Q Consensus 1102 -G~We~Ik~D~--------~l~l~~~i~~e~~~~~~~~ 1130 (1460)
|.|+.|+++. +|.|.++..+|++.+|.++
T Consensus 72 ~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tL 109 (118)
T PF09111_consen 72 EGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTL 109 (118)
T ss_dssp TTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHH
T ss_pred CchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHH
Confidence 9999988776 7778888888888776554
No 120
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.30 E-value=6.7e-12 Score=116.60 Aligned_cols=81 Identities=31% Similarity=0.507 Sum_probs=75.5
Q ss_pred HHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhh
Q 000500 639 LLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARA 718 (1460)
Q Consensus 639 iLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRa 718 (1460)
.|.++|...++.+..++|.++..+|..+++.|+.+.. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4677888889999999999999999999999987554 5899999999999999999999999999999999999999
Q ss_pred cccC
Q 000500 719 HRLG 722 (1460)
Q Consensus 719 hRiG 722 (1460)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 121
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.28 E-value=4.8e-11 Score=138.38 Aligned_cols=216 Identities=25% Similarity=0.296 Sum_probs=133.0
Q ss_pred eeEEEeecCCHHHHHHHHHHHHHHHHHHHhc---CC--c----------hhhHHHHHHHHHHHhCCcccc-cCCCCCccc
Q 000500 532 KELILRVELSSKQKEYYKAILTRNYQILTRR---GG--A----------QISLINVVMELRKLCCHPYML-EGVEPDIED 595 (1460)
Q Consensus 532 ~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~---~~--~----------~~~l~nil~~LRk~c~hP~L~-~~~e~~~~~ 595 (1460)
.++.++++|+..|+++|+.++.-.+..+.+. .. . ...+..++.+|+.+|+||+|+ +..-+....
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll 83 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQLL 83 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccccc
Confidence 4678999999999999999998776655321 11 1 133455677899999999986 333333333
Q ss_pred chHHHHHHHhhhhHHHHHHHHHHHH-----HHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHH---
Q 000500 596 TNESFKQLLESSGKLQLLDKMMVKL-----KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI--- 667 (1460)
Q Consensus 596 ~~~~~~~lv~~SgKl~~L~klL~~l-----~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~I--- 667 (1460)
..+....+...|||+.+|..+|..+ ...+.++||.++..+++|+|+.+|..+++.|-|++|..-..+....-
T Consensus 84 ~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~ 163 (297)
T PF11496_consen 84 LSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNG 163 (297)
T ss_dssp STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----
T ss_pred cchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCccc
Confidence 4455678889999999999999999 66688999999999999999999999999999999986655443332
Q ss_pred ---------HHHhccCC-CCeeEEeecccccc----ccCccCCCEEEEecCCCChhhHHHHHHhh-cccCCCCceEEEEE
Q 000500 668 ---------DRFNAKNS-SRFCFLLSTRAGGL----GINLATADTVIIYDSDWNPHADLQAMARA-HRLGQTNKVMIFRL 732 (1460)
Q Consensus 668 ---------d~Fn~~~s-~~~vfLlSTrAgg~----GINL~~Ad~VIi~DsdWNP~~d~QAigRa-hRiGQ~k~V~VyrL 732 (1460)
.......+ ...++|++|.-... .++-...|.||-||+.+++....-..-|. +|-+ +.+-|+||
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~--~~~PiirL 241 (297)
T PF11496_consen 164 NTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN--RLCPIIRL 241 (297)
T ss_dssp ------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---------S--EEEE
T ss_pred ccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC--CCCcEEEE
Confidence 11112222 33445555554433 13334679999999999998865444444 4433 89999999
Q ss_pred ecCCCHHHHHHHHHHHH
Q 000500 733 ITRGSIEERMMQMTKKK 749 (1460)
Q Consensus 733 vt~~TiEE~I~e~a~~K 749 (1460)
|..+|+|.-++..-...
T Consensus 242 v~~nSiEHi~L~~~~~~ 258 (297)
T PF11496_consen 242 VPSNSIEHIELCFPKSS 258 (297)
T ss_dssp EETTSHHHHHHHHTTTS
T ss_pred eeCCCHHHHHHHccCcc
Confidence 99999999887765543
No 122
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.24 E-value=1.5e-09 Score=138.72 Aligned_cols=131 Identities=20% Similarity=0.248 Sum_probs=103.0
Q ss_pred hhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeec
Q 000500 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1460)
Q Consensus 605 ~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlST 684 (1460)
....|...+.+-+..+.+.|..|||-+..+..-+.|..+|...|+++..++.... ..-..+|.. ++..+ .+.|+|
T Consensus 549 t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~--AG~~g--~VTIAT 623 (970)
T PRK12899 549 TEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAG--AGKLG--AVTVAT 623 (970)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHh--cCCCC--cEEEee
Confidence 3467899999999999999999999999999999999999999999999988743 222344432 33333 478999
Q ss_pred cccccccCccCC--------CEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCCHHHHHHHH
Q 000500 685 RAGGLGINLATA--------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 745 (1460)
Q Consensus 685 rAgg~GINL~~A--------d~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~ 745 (1460)
..+|+|.++.-. =+||.-..+=|...+.|..||++|.|..-....|- |+|..++.+
T Consensus 624 NmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~l-----SlEDdL~~~ 687 (970)
T PRK12899 624 NMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFL-----SFEDRLMRL 687 (970)
T ss_pred ccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEE-----EcchHHHHH
Confidence 999999887532 37888899999999999999999999886655432 345555543
No 123
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.23 E-value=6.8e-10 Score=139.70 Aligned_cols=310 Identities=17% Similarity=0.227 Sum_probs=181.4
Q ss_pred HhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhC---------CCCcEEEEEcc-ccH----HHHHHHHHHHCCCCeEEEE
Q 000500 299 FSWSKQTHVILADEMGLGKTIQSIAFLASLFGE---------RISPHLVVAPL-STL----RNWEREFATWAPQMNVVMY 364 (1460)
Q Consensus 299 ~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~---------~~~p~LIVvP~-sll----~qW~~E~~kw~P~l~vvvy 364 (1460)
-.|..+.|.|++..+|.|||..|...+..++++ +.-.++-|+|. ++. .+|..-|.-| ++.|..+
T Consensus 121 ~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~--gi~v~EL 198 (1230)
T KOG0952|consen 121 VAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL--GISVREL 198 (1230)
T ss_pred hhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc--cceEEEe
Confidence 356889999999999999999987666655543 11288999994 444 4455555444 6889999
Q ss_pred EcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh-------hhcccCCCcceEEEeccc
Q 000500 365 VGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL-------DSASLKPIKWQCMIVDEG 437 (1460)
Q Consensus 365 ~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~-------d~~~L~~i~w~~VIvDEA 437 (1460)
+|+.+.-+. .....+|+|||+|...- +...+. ...+|||||.
T Consensus 199 TGD~ql~~t-----------------------------ei~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEV 247 (1230)
T KOG0952|consen 199 TGDTQLTKT-----------------------------EIADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEV 247 (1230)
T ss_pred cCcchhhHH-----------------------------HHHhcCEEEecccceeeeeeeeccchhhhh--heeeEEeeee
Confidence 998654221 12467899999887521 111222 2468999999
Q ss_pred cccCCcch-----HHHHHHHhcc----ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000500 438 HRLKNKDS-----KLFSSLKQYS----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1460)
Q Consensus 438 HrlKN~~S-----k~~~al~~l~----~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L 508 (1460)
|-|..... ...+.++... .-+.++||||- -|..|+. .||..+.....-.|...|..
T Consensus 248 HlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATl--PN~eDvA---~fL~vn~~~glfsFd~~yRP---------- 312 (1230)
T KOG0952|consen 248 HLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATL--PNYEDVA---RFLRVNPYAGLFSFDQRYRP---------- 312 (1230)
T ss_pred hhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccC--CCHHHHH---HHhcCCCccceeeecccccc----------
Confidence 99976544 3333443322 23568999994 2444443 45544443333334333321
Q ss_pred HHhhchhhhhhhhhhhhhcCCCceeEEEeecCC--HHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccc
Q 000500 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELS--SKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1460)
Q Consensus 509 ~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls--~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~ 586 (1460)
.-| ....+-+.-. ..|.+..
T Consensus 313 ------vpL--------------~~~~iG~k~~~~~~~~~~~-------------------------------------- 334 (1230)
T KOG0952|consen 313 ------VPL--------------TQGFIGIKGKKNRQQKKNI-------------------------------------- 334 (1230)
T ss_pred ------cce--------------eeeEEeeecccchhhhhhH--------------------------------------
Confidence 100 0011100000 0000000
Q ss_pred cCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHH----hcCCe------------
Q 000500 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKWQ------------ 650 (1460)
Q Consensus 587 ~~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~----~~g~~------------ 650 (1460)
..+++..+. +...+||.|+||+....-.-..+..|. ..|..
T Consensus 335 -------------------d~~~~~kv~----e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l 391 (1230)
T KOG0952|consen 335 -------------------DEVCYDKVV----EFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQL 391 (1230)
T ss_pred -------------------HHHHHHHHH----HHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHH
Confidence 001111122 223458888888776543333333332 22221
Q ss_pred -------EEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhh----------HHH
Q 000500 651 -------YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHA----------DLQ 713 (1460)
Q Consensus 651 -------~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~----------d~Q 713 (1460)
...-+.++.-.+|+-.-+.|..+. +-+|++|...+.|+||++--.+|-=..-|++.. .+|
T Consensus 392 ~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~---i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQ 468 (1230)
T KOG0952|consen 392 KELFQQGMGIHHAGMLRSDRQLVEKEFKEGH---IKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQ 468 (1230)
T ss_pred HHHHHhhhhhcccccchhhHHHHHHHHhcCC---ceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHH
Confidence 223345667778888888887643 348999999999999997766665555666655 689
Q ss_pred HHHhhcccCCCCceEEEEEecCCCHHH
Q 000500 714 AMARAHRLGQTNKVMIFRLITRGSIEE 740 (1460)
Q Consensus 714 AigRahRiGQ~k~V~VyrLvt~~TiEE 740 (1460)
.+|||+|.+=.+.-..+.+.+.++++-
T Consensus 469 ifGRAGRPqFd~~G~giIiTt~dkl~~ 495 (1230)
T KOG0952|consen 469 IFGRAGRPQFDSSGEGIIITTRDKLDH 495 (1230)
T ss_pred HHhccCCCCCCCCceEEEEecccHHHH
Confidence 999999987666666665666655543
No 124
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.22 E-value=5.7e-10 Score=145.24 Aligned_cols=356 Identities=16% Similarity=0.142 Sum_probs=208.7
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCC---CCcEEEEEcc-ccHHHHHHHHHHHCCCC
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPL-STLRNWEREFATWAPQM 359 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~---~~p~LIVvP~-sll~qW~~E~~kw~P~l 359 (1460)
...+++|..++++....+..+.-++|..+||.|||..++.++.+..... ..+++.|.|. +++.+-.+.+..+....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 3468999999999877766665899999999999999998888887763 3488888885 55566778888887555
Q ss_pred eEEEE--EcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEE-EecHHHHHhh-----hcccCCCcceE
Q 000500 360 NVVMY--VGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVL-LTSYEMINLD-----SASLKPIKWQC 431 (1460)
Q Consensus 360 ~vvvy--~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVv-ItSYe~l~~d-----~~~L~~i~w~~ 431 (1460)
.+..- +|.....-. ...+. . . .............-+.+. +++...+... ...+..+.-.+
T Consensus 274 ~~~~~~~h~~~~~~~~-~~~~~-------~--~--~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~ 341 (733)
T COG1203 274 SVIGKSLHSSSKEPLL-LEPDQ-------D--I--LLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSL 341 (733)
T ss_pred ccccccccccccchhh-hcccc-------c--c--ceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhc
Confidence 55444 554433221 11100 0 0 000000000011122233 3333333210 00122344568
Q ss_pred EEeccccccCCc-chHHHHHHH-hcc--ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHH
Q 000500 432 MIVDEGHRLKNK-DSKLFSSLK-QYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1460)
Q Consensus 432 VIvDEAHrlKN~-~Sk~~~al~-~l~--~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~ 507 (1460)
+|+||+|-+--. ......++. .+. ....|++|||+- ..|.+.
T Consensus 342 vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP----------------------~~~~~~------------ 387 (733)
T COG1203 342 VILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLP----------------------PFLKEK------------ 387 (733)
T ss_pred hhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCC----------------------HHHHHH------------
Confidence 999999998655 333333332 222 457899999971 111111
Q ss_pred HHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccccc
Q 000500 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (1460)
Q Consensus 508 L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~ 587 (1460)
|...+.... ..+ .+.+ .+ ..++.|.+..
T Consensus 388 l~~~~~~~~-----~~~---~~~~-----~~---------------------------------------~~~~e~~~~~ 415 (733)
T COG1203 388 LKKALGKGR-----EVV---ENAK-----FC---------------------------------------PKEDEPGLKR 415 (733)
T ss_pred HHHHHhccc-----cee---cccc-----cc---------------------------------------cccccccccc
Confidence 111110000 000 0000 00 0001111110
Q ss_pred CCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHH
Q 000500 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (1460)
Q Consensus 588 ~~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~I 667 (1460)
....... .... ..+...+..-...|.+|+|-++.+..+-.+...|+..+.+++.+++......|.+.+
T Consensus 416 ~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke 483 (733)
T COG1203 416 KERVDVE-----------DGPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKE 483 (733)
T ss_pred ccchhhh-----------hhhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHH
Confidence 0000000 0000 122223333345689999999999999999999998888899999999999999998
Q ss_pred HHHhcc-CCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccC--CCCceEEEEEecCCCHHHHHHH
Q 000500 668 DRFNAK-NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG--QTNKVMIFRLITRGSIEERMMQ 744 (1460)
Q Consensus 668 d~Fn~~-~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiG--Q~k~V~VyrLvt~~TiEE~I~e 744 (1460)
+...+- ..+.-.++|+|.+...|+|+. .|.+|-==+ -....+||.||++|-| ....+.||...-......+.++
T Consensus 484 ~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe~a--PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~ 560 (733)
T COG1203 484 RELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITELA--PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYE 560 (733)
T ss_pred HHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeecCC--CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhh
Confidence 866532 111223899999999999987 666664222 2556899999999999 5668888888888888887777
Q ss_pred HHHHHHHH
Q 000500 745 MTKKKMVL 752 (1460)
Q Consensus 745 ~a~~K~~L 752 (1460)
....++.-
T Consensus 561 ~~~~~~~~ 568 (733)
T COG1203 561 KLEKKLKS 568 (733)
T ss_pred cchhhhcc
Confidence 76665543
No 125
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.21 E-value=6.1e-10 Score=148.41 Aligned_cols=110 Identities=14% Similarity=0.145 Sum_probs=89.0
Q ss_pred cCceEEEEecchhhHHHHHHHHHhcC---CeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEE
Q 000500 623 QGHRVLIYSQFQHMLDLLEDYLTFKK---WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1460)
Q Consensus 623 ~g~KVLIFSq~~~~LdiLed~L~~~g---~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~V 699 (1460)
....+|||..-...++.+.+.|...+ +.+..++|+++.++|+.++..+ +. ..+|++|..+..||+++..++|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~----~~-rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH----SG-RRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC----CC-ceEEEeccHHHhccccCCeeEE
Confidence 34689999999999999999998764 4578899999999999885443 22 3479999999999999999999
Q ss_pred EEecCC----C--------------ChhhHHHHHHhhcccCCCCceEEEEEecCCCHHH
Q 000500 700 IIYDSD----W--------------NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1460)
Q Consensus 700 Ii~Dsd----W--------------NP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE 740 (1460)
|-++.. + +-....||.||++|.| +-.+|+|+++...+.
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFNS 408 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHHh
Confidence 987621 2 3457899999999987 677899998765543
No 126
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.21 E-value=1.8e-09 Score=134.89 Aligned_cols=120 Identities=21% Similarity=0.192 Sum_probs=98.8
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeecc
Q 000500 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1460)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTr 685 (1460)
...|+..+.+-+..+.+.|..|||.+..+..-+.|...|...|+++..++.... +.-..+|.+ ++..+ .+.|+|.
T Consensus 409 ~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~--AG~~g--aVTIATN 483 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAE--AGKYG--AVTVSTQ 483 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHh--cCCCC--cEEEEec
Confidence 456899999999999999999999999999999999999999999999998744 333445543 23333 4789999
Q ss_pred ccccccCccCC---------------CEEEEecCCCChhhHHHHHHhhcccCCCCceEEE
Q 000500 686 AGGLGINLATA---------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1460)
Q Consensus 686 Agg~GINL~~A---------------d~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~Vy 730 (1460)
.+|.|.++.-. =+||.-...=|-..+.|..||++|.|..-....|
T Consensus 484 MAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 484 MAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred CCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 99999887632 3888888889999999999999999988766544
No 127
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.18 E-value=1.3e-09 Score=144.85 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=88.2
Q ss_pred cCceEEEEecchhhHHHHHHHHHhcCCe---EEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEE
Q 000500 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQ---YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1460)
Q Consensus 623 ~g~KVLIFSq~~~~LdiLed~L~~~g~~---~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~V 699 (1460)
....+|||+.....++.+.+.|...+++ +..++|+++..+|..+++.+ +...+|++|..++.||+++..++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~-----g~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH-----SGRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc-----CCeeEEEeccHHhhccccCcceEE
Confidence 3468999999999999999999887765 66789999999999886642 345689999999999999999999
Q ss_pred EEec---------------CCCCh---hhHHHHHHhhcccCCCCceEEEEEecCCCHH
Q 000500 700 IIYD---------------SDWNP---HADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1460)
Q Consensus 700 Ii~D---------------sdWNP---~~d~QAigRahRiGQ~k~V~VyrLvt~~TiE 739 (1460)
|.++ .+-.| ..+.||.||++|. .+-.+|+|+++..++
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDFL 414 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHHH
Confidence 9874 22223 5688888888887 467788999876544
No 128
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.12 E-value=9.6e-10 Score=121.19 Aligned_cols=153 Identities=20% Similarity=0.208 Sum_probs=105.4
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHH-HHHHHHHHhC--CCC-cEEEEEcc-ccHHHHHHHHHHHCC--
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGE--RIS-PHLVVAPL-STLRNWEREFATWAP-- 357 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~L~~~--~~~-p~LIVvP~-sll~qW~~E~~kw~P-- 357 (1460)
.+++||.++++-+ .++.++++..++|.|||+.+ +.++..+... ..+ .+|||+|. .++.|+...+..+..
T Consensus 21 ~~~~~Q~~~~~~~----~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPL----LSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHH----hcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 5899999999776 34889999999999999885 4445555544 233 79999995 788899999988864
Q ss_pred CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--cccCCCcceEEEec
Q 000500 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVD 435 (1460)
Q Consensus 358 ~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~--~~L~~i~w~~VIvD 435 (1460)
+.++..++|..........+ ....+|+|+|.+.+.... ..+.--.++++|+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvD 150 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKL--------------------------KRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLD 150 (203)
T ss_pred CceEEEEECCCCHHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEe
Confidence 57777888876544322211 125689999988765421 11222356899999
Q ss_pred cccccCCcc-h-HHHHHHHhcc-ccceEeeccccc
Q 000500 436 EGHRLKNKD-S-KLFSSLKQYS-TRHRVLLTGTPL 467 (1460)
Q Consensus 436 EAHrlKN~~-S-k~~~al~~l~-~~~rLLLTGTPl 467 (1460)
|+|.+.+.. . .+...+..+. ....+++||||-
T Consensus 151 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 151 EADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred ChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 999986543 2 2222333444 355789999985
No 129
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1.3e-09 Score=125.47 Aligned_cols=301 Identities=18% Similarity=0.256 Sum_probs=192.0
Q ss_pred hcCCcEEEEecCCCCcHHHHHHHHHHHHhCC--CCcEEEEEccccHHHHH-HHHHHHCCCC--eEEEEEcChhHHHHHHH
Q 000500 302 SKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNWE-REFATWAPQM--NVVMYVGTSQARNIIRE 376 (1460)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~~--~~p~LIVvP~sll~qW~-~E~~kw~P~l--~vvvy~G~~~~r~~i~~ 376 (1460)
.+|.+++.-...|+|||.+-...+....... ..-.||++|...+.+-. .-...|.... ++....|...-+..-.
T Consensus 61 i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~- 139 (397)
T KOG0327|consen 61 IKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQ- 139 (397)
T ss_pred ccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhh-
Confidence 5678899999999999988433333332221 12679999987775533 3344455444 4444444332221000
Q ss_pred hhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hcccCCCcceEEEeccccccCCc--chHHHHHHH
Q 000500 377 YEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRLKNK--DSKLFSSLK 452 (1460)
Q Consensus 377 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d--~~~L~~i~w~~VIvDEAHrlKN~--~Sk~~~al~ 452 (1460)
.......+|++.|...+... ...|..-...+.|+|||...... ..+.+..+.
T Consensus 140 ------------------------~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~ 195 (397)
T KOG0327|consen 140 ------------------------ALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQ 195 (397)
T ss_pred ------------------------hhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHH
Confidence 01124568888888665432 23555556789999999887543 456666666
Q ss_pred hcccc-ceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhchhhhhhhhhhhhhcCCCc
Q 000500 453 QYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPK 531 (1460)
Q Consensus 453 ~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~LRR~K~dv~~~LP~k 531 (1460)
.+..+ ..+++|||-. .++. .+. +.|| ..
T Consensus 196 ~lp~~vQv~l~SAT~p----~~vl-------------------------------~vt---~~f~-------------~~ 224 (397)
T KOG0327|consen 196 ELPSDVQVVLLSATMP----SDVL-------------------------------EVT---KKFM-------------RE 224 (397)
T ss_pred HcCcchhheeecccCc----HHHH-------------------------------HHH---HHhc-------------cC
Confidence 66544 4577888831 0100 000 0000 00
Q ss_pred eeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHH
Q 000500 532 KELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQ 611 (1460)
Q Consensus 532 ~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~~~~~~~~~lv~~SgKl~ 611 (1460)
...+.+.-...+.+.. + +-|.. . ....|+.
T Consensus 225 -pv~i~vkk~~ltl~gi----------------------------k----q~~i~--v---------------~k~~k~~ 254 (397)
T KOG0327|consen 225 -PVRILVKKDELTLEGI----------------------------K----QFYIN--V---------------EKEEKLD 254 (397)
T ss_pred -ceEEEecchhhhhhhe----------------------------e----eeeee--c---------------ccccccc
Confidence 0011111000000000 0 00000 0 0011666
Q ss_pred HHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeecccccccc
Q 000500 612 LLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGI 691 (1460)
Q Consensus 612 ~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GI 691 (1460)
.|..+.. .-...+||++..+-++.|.+.|..+|+....++|.+...+|..++..|+.+.+. +|++|...+.||
T Consensus 255 ~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssr---vlIttdl~argi 327 (397)
T KOG0327|consen 255 TLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSR---VLITTDLLARGI 327 (397)
T ss_pred HHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCce---EEeecccccccc
Confidence 6776666 234689999999999999999999999999999999999999999999876554 899999999999
Q ss_pred CccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCC
Q 000500 692 NLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (1460)
Q Consensus 692 NL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~T 737 (1460)
+++.++.||.||.|-|..+|+.++||++|.|-+- .+..++++.+
T Consensus 328 dv~~~slvinydlP~~~~~yihR~gr~gr~grkg--~~in~v~~~d 371 (397)
T KOG0327|consen 328 DVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKG--VAINFVTEED 371 (397)
T ss_pred chhhcceeeeeccccchhhhhhhcccccccCCCc--eeeeeehHhh
Confidence 9999999999999999999999999999999653 3345666543
No 130
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.10 E-value=7.3e-10 Score=117.95 Aligned_cols=155 Identities=21% Similarity=0.270 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCC-CCcEEEEEcc-ccHHHHHHHHHHHCCC--CeEEE
Q 000500 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPL-STLRNWEREFATWAPQ--MNVVM 363 (1460)
Q Consensus 288 pyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~-~~p~LIVvP~-sll~qW~~E~~kw~P~--l~vvv 363 (1460)
|+|.+++.-+ ..+.+.++...+|.|||..++..+....... ...+||++|. +++.+-..++..++.. .++..
T Consensus 2 ~~Q~~~~~~i----~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 2 PLQQEAIEAI----ISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp HHHHHHHHHH----HTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred HHHHHHHHHH----HcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccc
Confidence 7999998876 3678899999999999999876665544443 3499999995 7788888899988853 67888
Q ss_pred EEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcc--cCCCcceEEEeccccccC
Q 000500 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHRLK 441 (1460)
Q Consensus 364 y~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~--L~~i~w~~VIvDEAHrlK 441 (1460)
++|........... -....+|+|+|++.+...... +.-...++||+||+|.+-
T Consensus 78 ~~~~~~~~~~~~~~-------------------------~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~ 132 (169)
T PF00270_consen 78 LHGGQSISEDQREV-------------------------LSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLS 132 (169)
T ss_dssp ESTTSCHHHHHHHH-------------------------HHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHH
T ss_pred cccccccccccccc-------------------------ccccccccccCcchhhccccccccccccceeeccCcccccc
Confidence 87765422111110 013578999999999765443 122347899999999997
Q ss_pred Cc--chHHHHHHHhc---cccceEeeccccccCCHH
Q 000500 442 NK--DSKLFSSLKQY---STRHRVLLTGTPLQNNLD 472 (1460)
Q Consensus 442 N~--~Sk~~~al~~l---~~~~rLLLTGTPlqNnl~ 472 (1460)
.. .......+..+ ...+.+++||||- .+++
T Consensus 133 ~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 133 DETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVE 167 (169)
T ss_dssp HTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHH
T ss_pred cccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHh
Confidence 63 22233333333 2356899999996 4443
No 131
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.10 E-value=7e-09 Score=132.62 Aligned_cols=121 Identities=16% Similarity=0.165 Sum_probs=99.3
Q ss_pred hhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeec
Q 000500 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1460)
Q Consensus 605 ~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlST 684 (1460)
....|+..+.+-+..+.+.|..|||-+..+..-+.|..+|...|+++..++.... +.-..+|. +++..+ .+.|+|
T Consensus 430 t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa--~AG~~G--aVTIAT 504 (913)
T PRK13103 430 TAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIA--QAGRPG--ALTIAT 504 (913)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHH--cCCCCC--cEEEec
Confidence 4567999999999999999999999999999999999999999999988887643 33334554 344444 468999
Q ss_pred cccccccCcc-------------------------------------CCCEEEEecCCCChhhHHHHHHhhcccCCCCce
Q 000500 685 RAGGLGINLA-------------------------------------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (1460)
Q Consensus 685 rAgg~GINL~-------------------------------------~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V 727 (1460)
..+|+|.++. ..=+||.-...=|-..+.|..||++|.|..-..
T Consensus 505 NMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS 584 (913)
T PRK13103 505 NMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSS 584 (913)
T ss_pred cCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 9999998874 223789889999999999999999999988766
Q ss_pred EEE
Q 000500 728 MIF 730 (1460)
Q Consensus 728 ~Vy 730 (1460)
..|
T Consensus 585 ~f~ 587 (913)
T PRK13103 585 RFY 587 (913)
T ss_pred EEE
Confidence 544
No 132
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.09 E-value=4.3e-10 Score=129.78 Aligned_cols=313 Identities=18% Similarity=0.249 Sum_probs=205.0
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHH-HHHHHHHhC-CCC-cEEEEEccc-cHHH---HHHHHHHHCC
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGE-RIS-PHLVVAPLS-TLRN---WEREFATWAP 357 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaI-a~l~~L~~~-~~~-p~LIVvP~s-ll~q---W~~E~~kw~P 357 (1460)
+..|.|...++-+ -.+...+-..=+|.|||..-+ -.+..|... ..+ +.||+.|.. +..| ...++.+++
T Consensus 43 ~ptpiqRKTipli----Le~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt- 117 (529)
T KOG0337|consen 43 TPTPIQRKTIPLI----LEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGT- 117 (529)
T ss_pred CCCchhcccccce----eeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcccc-
Confidence 4566777766544 345555556679999997753 334444432 223 899999964 4344 445555555
Q ss_pred CCeEE-EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc--ccCCCcceEEEe
Q 000500 358 QMNVV-MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIV 434 (1460)
Q Consensus 358 ~l~vv-vy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~--~L~~i~w~~VIv 434 (1460)
+++.. .|.|++.+.+.+.- ..+.|||+.|...+..-.. .|.--...|||+
T Consensus 118 ~lr~s~~~ggD~~eeqf~~l---------------------------~~npDii~ATpgr~~h~~vem~l~l~sveyVVf 170 (529)
T KOG0337|consen 118 KLRQSLLVGGDSIEEQFILL---------------------------NENPDIIIATPGRLLHLGVEMTLTLSSVEYVVF 170 (529)
T ss_pred chhhhhhcccchHHHHHHHh---------------------------ccCCCEEEecCceeeeeehheeccccceeeeee
Confidence 55555 55555544332211 1357899988887653211 133334578999
Q ss_pred ccccccCC--cchHHHHHHHhccc-cceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHh
Q 000500 435 DEGHRLKN--KDSKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1460)
Q Consensus 435 DEAHrlKN--~~Sk~~~al~~l~~-~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~ 511 (1460)
|||.+|-. ..-++.+.+..++. ...+++|||- .+.+.+ | -+.-
T Consensus 171 dEadrlfemgfqeql~e~l~rl~~~~QTllfSatl-p~~lv~------------------f---------------akaG 216 (529)
T KOG0337|consen 171 DEADRLFEMGFQEQLHEILSRLPESRQTLLFSATL-PRDLVD------------------F---------------AKAG 216 (529)
T ss_pred hhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC-chhhHH------------------H---------------HHcc
Confidence 99999954 45678888888864 4578999994 111111 1 0011
Q ss_pred hchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000500 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1460)
Q Consensus 512 L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~ 591 (1460)
+.+-++-| -||.. .+++ ..+++
T Consensus 217 l~~p~lVR--ldvet------------kise------------------------------~lk~~-------------- 238 (529)
T KOG0337|consen 217 LVPPVLVR--LDVET------------KISE------------------------------LLKVR-------------- 238 (529)
T ss_pred CCCCceEE--eehhh------------hcch------------------------------hhhhh--------------
Confidence 11111111 01100 0000 00011
Q ss_pred CcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHh
Q 000500 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1460)
Q Consensus 592 ~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn 671 (1460)
...+....|...|..++..... .++.+||+.-....+++...|...|+....|.|++....|..-+.+|+
T Consensus 239 ---------f~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~ 308 (529)
T KOG0337|consen 239 ---------FFRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFR 308 (529)
T ss_pred ---------eeeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhcccccc
Confidence 1112344567777777766543 458999999999999999999999999999999999999999999997
Q ss_pred ccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCC
Q 000500 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1460)
Q Consensus 672 ~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1460)
.... -+|++|+.+..|++++-.+.||.||.+-.+..+..|.||+.|-|.+- ..|-||+..
T Consensus 309 ~~k~---~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg--~aYs~V~~~ 368 (529)
T KOG0337|consen 309 GRKT---SILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTG--RAYSLVAST 368 (529)
T ss_pred CCcc---ceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccc--eEEEEEecc
Confidence 6544 48999999999999999999999999999999999999999988653 446666554
No 133
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.07 E-value=4.5e-09 Score=139.53 Aligned_cols=86 Identities=14% Similarity=0.125 Sum_probs=63.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHH-HHH---HHC
Q 000500 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWER-EFA---TWA 356 (1460)
Q Consensus 282 ~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~-E~~---kw~ 356 (1460)
.|.+.||+|.+.+..+...+..+..+++-..+|+|||+..+.-+..... ...+++|.||. ++..||.. ++. +.+
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~ 320 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-TEKPVVISTNTKVLQSQLLEKDIPLLNEIL 320 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHHHHHHHHc
Confidence 4678999999988888777788888899999999999987665544433 33599999996 55677743 444 333
Q ss_pred C-CCeEEEEEcCh
Q 000500 357 P-QMNVVMYVGTS 368 (1460)
Q Consensus 357 P-~l~vvvy~G~~ 368 (1460)
+ .+++++..|..
T Consensus 321 ~~~~~~~~~kG~~ 333 (850)
T TIGR01407 321 NFKINAALIKGKS 333 (850)
T ss_pred CCCceEEEEEcch
Confidence 3 47788777754
No 134
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.03 E-value=1.6e-08 Score=116.72 Aligned_cols=321 Identities=15% Similarity=0.156 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEEEEEc
Q 000500 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVG 366 (1460)
Q Consensus 288 pyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P~l~vvvy~G 366 (1460)
|.|..+++-+. ..+..+.+.+.+|.||++..- |-.|...+ -++||.|+ .++....+.+.+.--....+--.-
T Consensus 23 ~LQE~A~~c~V---K~k~DVyVsMPTGaGKSLCyQ--LPaL~~~g--ITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKl 95 (641)
T KOG0352|consen 23 RLQEQAINCIV---KRKCDVYVSMPTGAGKSLCYQ--LPALVHGG--ITIVISPLIALIKDQIDHLKRLKVPCESLNSKL 95 (641)
T ss_pred hHHHHHHHHHH---hccCcEEEeccCCCchhhhhh--chHHHhCC--eEEEehHHHHHHHHHHHHHHhcCCchhHhcchh
Confidence 67989987663 567889999999999997531 12233343 67888896 666666777765421110000011
Q ss_pred ChhHHH-HHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh-----hccc-CCCcceEEEeccccc
Q 000500 367 TSQARN-IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD-----SASL-KPIKWQCMIVDEGHR 439 (1460)
Q Consensus 367 ~~~~r~-~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d-----~~~L-~~i~w~~VIvDEAHr 439 (1460)
+..+|. ++.+.+- ....-.++-+|.|+...+ ...| +.-...+++|||||.
T Consensus 96 St~ER~ri~~DL~~-----------------------ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHC 152 (641)
T KOG0352|consen 96 STVERSRIMGDLAK-----------------------EKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHC 152 (641)
T ss_pred hHHHHHHHHHHHHh-----------------------cCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhh
Confidence 122222 2222211 122334677777776443 1122 223457899999998
Q ss_pred cCCcch------HHHHHHHhc-cccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHH-HhhhhhHHHHHHHHHh
Q 000500 440 LKNKDS------KLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEE-FKDINQEEQISRLHRM 511 (1460)
Q Consensus 440 lKN~~S------k~~~al~~l-~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~-f~~~~~~~~i~~L~~~ 511 (1460)
...... ...-+|+.. ..--.+.||||.-..--+|+|..|++-.|-..-....|... |-+
T Consensus 153 VSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD------------- 219 (641)
T KOG0352|consen 153 VSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYD------------- 219 (641)
T ss_pred HhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHH-------------
Confidence 754321 222233332 23345789999866667788888887666432111122111 000
Q ss_pred hchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000500 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1460)
Q Consensus 512 L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~ 591 (1460)
..|+.+++..+.. +..--++|...|--+.....
T Consensus 220 ----------------------------------~~~K~~I~D~~~~-------------LaDF~~~~LG~~~~~~~~~K 252 (641)
T KOG0352|consen 220 ----------------------------------NHMKSFITDCLTV-------------LADFSSSNLGKHEKASQNKK 252 (641)
T ss_pred ----------------------------------HHHHHHhhhHhHh-------------HHHHHHHhcCChhhhhcCCC
Confidence 0112221111111 11112222222211111000
Q ss_pred CcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHh
Q 000500 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1460)
Q Consensus 592 ~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn 671 (1460)
....--||||......+.+.-.|..+|++..-++.+....+|..+-+.+-
T Consensus 253 ------------------------------~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM 302 (641)
T KOG0352|consen 253 ------------------------------TFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWM 302 (641)
T ss_pred ------------------------------CcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHh
Confidence 01124599999999999999999999999999999999999999999997
Q ss_pred ccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEE
Q 000500 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (1460)
Q Consensus 672 ~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~Vyr 731 (1460)
+++-. +|+.|-+.|.|++-+++..||+++++-|-+-|-|--||++|-|-..-++.|+
T Consensus 303 ~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 303 NNEIP---VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred cCCCC---EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeee
Confidence 75554 7899999999999999999999999999999999999999999888887765
No 135
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.03 E-value=2.3e-07 Score=110.77 Aligned_cols=128 Identities=20% Similarity=0.273 Sum_probs=106.9
Q ss_pred HHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCC
Q 000500 617 MVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATA 696 (1460)
Q Consensus 617 L~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~A 696 (1460)
++...+.|.||||-+=..+|.+-|.+||...|+++..++..+..-+|.++|..... +.|-+|+...-+-+||+|+.+
T Consensus 439 I~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~---G~~DvLVGINLLREGLDiPEV 515 (663)
T COG0556 439 IRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL---GEFDVLVGINLLREGLDLPEV 515 (663)
T ss_pred HHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc---CCccEEEeehhhhccCCCcce
Confidence 34445679999999999999999999999999999999999999999999999976 556699999999999999999
Q ss_pred CEEEEecCC-----CChhhHHHHHHhhcccCCCCceEEEEEecCCCHHHHHHHHHHH
Q 000500 697 DTVIIYDSD-----WNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (1460)
Q Consensus 697 d~VIi~Dsd-----WNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~a~~ 748 (1460)
+.|.|+|.| -+-...+|-+|||.|--. -+|..|-=...+|+.+.|-+..++
T Consensus 516 sLVAIlDADKeGFLRse~SLIQtIGRAARN~~-GkvIlYAD~iT~sM~~Ai~ET~RR 571 (663)
T COG0556 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKVILYADKITDSMQKAIDETERR 571 (663)
T ss_pred eEEEEeecCccccccccchHHHHHHHHhhccC-CeEEEEchhhhHHHHHHHHHHHHH
Confidence 999999987 467889999999999432 345555444556677777665544
No 136
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.02 E-value=4.7e-08 Score=124.00 Aligned_cols=130 Identities=18% Similarity=0.230 Sum_probs=104.0
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeecc
Q 000500 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1460)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTr 685 (1460)
...|+..+.+-+..+.+.|..|||.|..+...+.|..+|...|+++..++...- +.-..+|. +++..+ .+.|+|.
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~-e~EA~IIa--~AG~~G--aVTIATN 482 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN-AREAEIIA--KAGQKG--AITIATN 482 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-hhHHHHHH--hCCCCC--eEEEecc
Confidence 467888999999999999999999999999999999999999999999998743 22233443 344334 5789999
Q ss_pred ccccccCccCCC--------EEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCCHHHHHHHH
Q 000500 686 AGGLGINLATAD--------TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 745 (1460)
Q Consensus 686 Agg~GINL~~Ad--------~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e~ 745 (1460)
.+|+|.++.-.. +||....+=|-..+.|..||++|.|..-....|- |+|..++.+
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~l-----SLeD~L~r~ 545 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFI-----SLDDQLFRR 545 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEE-----ecchHHHHH
Confidence 999999987544 8999999999999999999999999886665443 345555544
No 137
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.01 E-value=9.1e-09 Score=116.57 Aligned_cols=297 Identities=17% Similarity=0.144 Sum_probs=189.3
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEE
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P~l~vv 362 (1460)
..+||.|++++|-. ..+..++|...+|-||++..- |-.|.. .+-.|||||+ |++....-.++...-+...+
T Consensus 93 ekfrplq~~ain~~----ma~ed~~lil~tgggkslcyq--lpal~a--dg~alvi~plislmedqil~lkqlgi~as~l 164 (695)
T KOG0353|consen 93 EKFRPLQLAAINAT----MAGEDAFLILPTGGGKSLCYQ--LPALCA--DGFALVICPLISLMEDQILQLKQLGIDASML 164 (695)
T ss_pred HhcChhHHHHhhhh----hccCceEEEEeCCCccchhhh--hhHHhc--CCceEeechhHHHHHHHHHHHHHhCcchhhc
Confidence 35899999999875 578889999999999997531 111222 2478999996 77777777777765333222
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc-------ccCCCcceEEEec
Q 000500 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-------SLKPIKWQCMIVD 435 (1460)
Q Consensus 363 vy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~-------~L~~i~w~~VIvD 435 (1460)
--..++..-. ..+- ........|.++.+|++.+.+... .+..-.|.+|-||
T Consensus 165 nansske~~k---~v~~-------------------~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaid 222 (695)
T KOG0353|consen 165 NANSSKEEAK---RVEA-------------------AITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAID 222 (695)
T ss_pred cCcccHHHHH---HHHH-------------------HHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeec
Confidence 2222222211 1111 011223578888899988765432 3334457899999
Q ss_pred cccccCC-------cchHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000500 436 EGHRLKN-------KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1460)
Q Consensus 436 EAHrlKN-------~~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L 508 (1460)
|+|.... ..+.+.-.-++|+....++||||...+-+.+.-.+|..-..-
T Consensus 223 evhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~------------------------ 278 (695)
T KOG0353|consen 223 EVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAF------------------------ 278 (695)
T ss_pred ceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhh------------------------
Confidence 9998743 223333333566777789999998655555444333211000
Q ss_pred HHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000500 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1460)
Q Consensus 509 ~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~ 588 (1460)
..|.-.|.|-|...
T Consensus 279 ------------------------------------------------------------------tf~a~fnr~nl~ye 292 (695)
T KOG0353|consen 279 ------------------------------------------------------------------TFRAGFNRPNLKYE 292 (695)
T ss_pred ------------------------------------------------------------------eeecccCCCCceeE
Confidence 00001112222211
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHH
Q 000500 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1460)
Q Consensus 589 ~e~~~~~~~~~~~~lv~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id 668 (1460)
+...+...++.+ .-+.+++..-. .|..-||||-...-.+-+...|...|+....++..+.+.+|.-+-+
T Consensus 293 v~qkp~n~dd~~----------edi~k~i~~~f-~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq 361 (695)
T KOG0353|consen 293 VRQKPGNEDDCI----------EDIAKLIKGDF-AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQ 361 (695)
T ss_pred eeeCCCChHHHH----------HHHHHHhcccc-CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccc
Confidence 111111111111 11222332211 3677899999888899999999999999999999999999888877
Q ss_pred HHhccCCCCeeEEeeccccccccCccCCCEEEEecCCCChhhHHHH
Q 000500 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQA 714 (1460)
Q Consensus 669 ~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QA 714 (1460)
.+-+ +.+-+++.|-|.|.||+-+.+..||+-..+-+-.+|-||
T Consensus 362 ~w~a---~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqa 404 (695)
T KOG0353|consen 362 GWIA---GEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQA 404 (695)
T ss_pred cccc---cceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHH
Confidence 7754 556689999999999999999999999999999999994
No 138
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.93 E-value=4.3e-08 Score=125.14 Aligned_cols=72 Identities=31% Similarity=0.494 Sum_probs=59.9
Q ss_pred CCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEE-----ecCC---C---ChhhHHHHHH
Q 000500 648 KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-----YDSD---W---NPHADLQAMA 716 (1460)
Q Consensus 648 g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi-----~Dsd---W---NP~~d~QAig 716 (1460)
.|.+..-+.+++..+|...-+.|.. +.+-+|+||...+-|+||+ |++||| |||. | +|...+|.+|
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~---g~iqvlvstatlawgvnlp-ahtViikgtqvy~pekg~w~elsp~dv~qmlg 682 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFAD---GHIQVLVSTATLAWGVNLP-AHTVIIKGTQVYDPEKGRWTELSPLDVMQMLG 682 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhc---CceeEEEeehhhhhhcCCC-cceEEecCccccCcccCccccCCHHHHHHHHh
Confidence 4678888999999999999999965 4455899999999999998 567776 6664 3 5889999999
Q ss_pred hhcccCC
Q 000500 717 RAHRLGQ 723 (1460)
Q Consensus 717 RahRiGQ 723 (1460)
||+|.+-
T Consensus 683 ragrp~~ 689 (1674)
T KOG0951|consen 683 RAGRPQY 689 (1674)
T ss_pred hcCCCcc
Confidence 9999763
No 139
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.83 E-value=7.5e-10 Score=120.43 Aligned_cols=62 Identities=39% Similarity=0.867 Sum_probs=54.3
Q ss_pred cchhhhcccccccccccccCCCCC---eeecCCCCCcccccccCCCCCCCCCCCCCCCccCCCCC
Q 000500 39 EKFERIVRIDAKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN 100 (1460)
Q Consensus 39 ~~~~~~~~~~~~~~~C~~C~~~g~---ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~ 100 (1460)
..+++.-|.+-.+.+|.+||.+.+ ||+||.|+|+||++||.|||..+|+|.|.|+.|.+.+.
T Consensus 269 ~avk~yrwqcieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~~~ 333 (336)
T KOG1244|consen 269 AAVKTYRWQCIECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEELK 333 (336)
T ss_pred HHHHhheeeeeecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHHHh
Confidence 345566678888999999998765 99999999999999999999999999999999986543
No 140
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.81 E-value=4e-08 Score=112.46 Aligned_cols=238 Identities=21% Similarity=0.256 Sum_probs=146.5
Q ss_pred CCCC-CCCCCCCCHHHHHHHHHHHHhhh------cCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEc-cccHHH
Q 000500 276 HSPE-FLSGGSLHPYQLEGLNFLRFSWS------KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRN 347 (1460)
Q Consensus 276 ~~P~-~~~g~~LrpyQlegvnwL~~~~~------~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP-~sll~q 347 (1460)
..|. .+..+.|-.-|+|+|-+..+.+. .+.+.+|+|.+|.||--|+.++|...+..+..+.+.|.. ..|...
T Consensus 27 ~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~D 106 (303)
T PF13872_consen 27 HLPEEVIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYD 106 (303)
T ss_pred CCCHHHHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhH
Confidence 4454 34568899999999998876665 377889999999999999999998877776665555554 677777
Q ss_pred HHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh------
Q 000500 348 WEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS------ 421 (1460)
Q Consensus 348 W~~E~~kw~P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~------ 421 (1460)
-.+.+....-. .+.+..-.. + + .+ .....+..|+.+||.++....
T Consensus 107 a~RDl~DIG~~-~i~v~~l~~--------~----~----------~~------~~~~~~~GvlF~TYs~L~~~~~~~~~~ 157 (303)
T PF13872_consen 107 AERDLRDIGAD-NIPVHPLNK--------F----K----------YG------DIIRLKEGVLFSTYSTLISESQSGGKY 157 (303)
T ss_pred HHHHHHHhCCC-cccceechh--------h----c----------cC------cCCCCCCCccchhHHHHHhHHhccCCc
Confidence 77777754411 111111000 0 0 00 001246679999999997763
Q ss_pred -cccCC-Ccc------eEEEeccccccCCcch------HHHHHHHhc----cccceEeeccccccCCHHHHHHHHHhh--
Q 000500 422 -ASLKP-IKW------QCMIVDEGHRLKNKDS------KLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFL-- 481 (1460)
Q Consensus 422 -~~L~~-i~w------~~VIvDEAHrlKN~~S------k~~~al~~l----~~~~rLLLTGTPlqNnl~EL~sLL~fL-- 481 (1460)
..|.. +.| .+||+||||+.||..+ +...++..+ ...+.+..|||.... +..|- ++.-|
T Consensus 158 ~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~Nma-Ym~RLGL 235 (303)
T PF13872_consen 158 RSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNMA-YMSRLGL 235 (303)
T ss_pred cchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-Cceee-eeeeccc
Confidence 22222 234 3899999999999755 555555544 344678899998633 22221 11111
Q ss_pred -cC-CCCCChHHHHHHHhhhhhHHHHHHHHHhh--chhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHH
Q 000500 482 -DA-GKFGSLEEFQEEFKDINQEEQISRLHRML--APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKA 550 (1460)
Q Consensus 482 -~p-~~f~~~~~F~~~f~~~~~~~~i~~L~~~L--~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~ 550 (1460)
.+ ..|.++.+|.+....-. ....+-+..-| ...+++|.. ++-.....++.++|++.|.+.|+.
T Consensus 236 WG~gtpf~~~~~f~~a~~~gG-v~amE~vA~dlKa~G~yiaR~L-----Sf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 236 WGPGTPFPDFDDFLEAMEKGG-VGAMEMVAMDLKARGMYIARQL-----SFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred cCCCCCCCCHHHHHHHHHhcC-chHHHHHHHHHHhcchheeeec-----ccCCceEEEEEecCCHHHHHHhcC
Confidence 11 24677788877664311 11111111111 123444433 344557889999999999999974
No 141
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.72 E-value=4.2e-07 Score=118.04 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=35.5
Q ss_pred hhhhHHHHHHHHHHHHHHc---------CceEEEEecchhhHHHHHHHHHh
Q 000500 605 ESSGKLQLLDKMMVKLKEQ---------GHRVLIYSQFQHMLDLLEDYLTF 646 (1460)
Q Consensus 605 ~~SgKl~~L~klL~~l~~~---------g~KVLIFSq~~~~LdiLed~L~~ 646 (1460)
...+|+..|.++|.++... +.+|||||++.++...|.++|..
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 4688999999999876544 46899999999999999999865
No 142
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.68 E-value=1e-06 Score=112.78 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCC-HHHHHHHHHHHhccCCCCeeEEeec
Q 000500 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVG-GAERQIRIDRFNAKNSSRFCFLLST 684 (1460)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~-~~eRq~~Id~Fn~~~s~~~vfLlST 684 (1460)
...|...+.+-+..+.+.|..|||-+..+..-+.|..+|...|+++..++.... .+.-.++|.+ ++..+ .+-|+|
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~G--~VTIAT 481 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRKG--SITIAT 481 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCCC--cEEEec
Confidence 456888888888888999999999999999999999999999999999999743 2344456654 33333 478999
Q ss_pred cccccccCc
Q 000500 685 RAGGLGINL 693 (1460)
Q Consensus 685 rAgg~GINL 693 (1460)
..+|+|.++
T Consensus 482 NMAGRGTDI 490 (870)
T CHL00122 482 NMAGRGTDI 490 (870)
T ss_pred cccCCCcCe
Confidence 999999775
No 143
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.64 E-value=3.7e-07 Score=114.45 Aligned_cols=147 Identities=19% Similarity=0.296 Sum_probs=100.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHH-HHHHHHHHC
Q 000500 278 PEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN-WEREFATWA 356 (1460)
Q Consensus 278 P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~q-W~~E~~kw~ 356 (1460)
|-...+.+|-.+|.+++--| ..|..+++|.-+-.|||+.|=..++. ...+..+++--.|...|+| =.++|+.-+
T Consensus 290 ~a~~~pFelD~FQk~Ai~~l----erg~SVFVAAHTSAGKTvVAEYAial-aq~h~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 290 MALIYPFELDTFQKEAIYHL----ERGDSVFVAAHTSAGKTVVAEYAIAL-AQKHMTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred HHhhCCCCccHHHHHHHHHH----HcCCeEEEEecCCCCcchHHHHHHHH-HHhhccceEecchhhhhccchHHHHHHhc
Confidence 33344578999999998666 88999999999999999987433332 2233348889999766655 467777666
Q ss_pred CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----hcccCCCcceEE
Q 000500 357 PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKWQCM 432 (1460)
Q Consensus 357 P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d----~~~L~~i~w~~V 432 (1460)
.+.. .++|+.+- ......+|+|-|.++.. ...++.+.| |
T Consensus 365 ~Dvg--LlTGDvqi---------------------------------nPeAsCLIMTTEILRsMLYrgadliRDvE~--V 407 (1248)
T KOG0947|consen 365 GDVG--LLTGDVQI---------------------------------NPEASCLIMTTEILRSMLYRGADLIRDVEF--V 407 (1248)
T ss_pred cccc--eeecceee---------------------------------CCCcceEeehHHHHHHHHhcccchhhccce--E
Confidence 5544 55665431 23456899999988763 445566555 9
Q ss_pred EeccccccCCcc-hHHHHHHHhccccc--eEeecccc
Q 000500 433 IVDEGHRLKNKD-SKLFSSLKQYSTRH--RVLLTGTP 466 (1460)
Q Consensus 433 IvDEAHrlKN~~-Sk~~~al~~l~~~~--rLLLTGTP 466 (1460)
|+||+|++-+.. .-.+..+.-+-.+| .++||||-
T Consensus 408 IFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATV 444 (1248)
T KOG0947|consen 408 IFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATV 444 (1248)
T ss_pred EEeeeeecccccccccceeeeeeccccceEEEEeccC
Confidence 999999996533 23444444444444 48999993
No 144
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.63 E-value=7.2e-07 Score=118.92 Aligned_cols=139 Identities=19% Similarity=0.174 Sum_probs=90.5
Q ss_pred cCCcEEEEecCCCCcHHHHHHHHHHHHhCCCC-cEEEEEc-cccHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhc
Q 000500 303 KQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAP-LSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFY 380 (1460)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~-p~LIVvP-~sll~qW~~E~~kw~P~l~vvvy~G~~~~r~~i~~~e~~ 380 (1460)
.+.+|++.+-+|+|||++++-++..+...... .+++||- ..|-.|-..+|..+........ ...+...+++.-
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l-- 346 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELL-- 346 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHH--
Confidence 45679999999999999998888777766333 5566666 5777899999998874433332 222333333210
Q ss_pred CCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcc----cCCCcceEEEeccccccCCcchHHHHHHHh-cc
Q 000500 381 FPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS----LKPIKWQCMIVDEGHRLKNKDSKLFSSLKQ-YS 455 (1460)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~----L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~-l~ 455 (1460)
....-.|+|||-+.+...... ...-+.-+||+|||||- ....+.+.++. +.
T Consensus 347 ----------------------~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS--Q~G~~~~~~~~~~~ 402 (962)
T COG0610 347 ----------------------EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS--QYGELAKLLKKALK 402 (962)
T ss_pred ----------------------hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc--cccHHHHHHHHHhc
Confidence 001235999999888654322 23445678999999985 33344444433 34
Q ss_pred ccceEeeccccccCC
Q 000500 456 TRHRVLLTGTPLQNN 470 (1460)
Q Consensus 456 ~~~rLLLTGTPlqNn 470 (1460)
...-++.||||+...
T Consensus 403 ~a~~~gFTGTPi~~~ 417 (962)
T COG0610 403 KAIFIGFTGTPIFKE 417 (962)
T ss_pred cceEEEeeCCccccc
Confidence 466789999997655
No 145
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.62 E-value=1.3e-06 Score=113.85 Aligned_cols=157 Identities=19% Similarity=0.246 Sum_probs=104.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCC-
Q 000500 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM- 359 (1460)
Q Consensus 282 ~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P~l- 359 (1460)
.+.+|-++|.+++.-| ..+.+++++..+|.|||+.+-.++..-...+. ++.-..|. ++-.|=.++|..-+.++
T Consensus 116 ~~F~LD~fQ~~a~~~L----er~esVlV~ApTssGKTvVaeyAi~~al~~~q-rviYTsPIKALsNQKyrdl~~~fgdv~ 190 (1041)
T COG4581 116 YPFELDPFQQEAIAIL----ERGESVLVCAPTSSGKTVVAEYAIALALRDGQ-RVIYTSPIKALSNQKYRDLLAKFGDVA 190 (1041)
T ss_pred CCCCcCHHHHHHHHHH----hCCCcEEEEccCCCCcchHHHHHHHHHHHcCC-ceEeccchhhhhhhHHHHHHHHhhhhh
Confidence 4688999999998766 88999999999999999998766665544443 58889995 55566666765444222
Q ss_pred -eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----hcccCCCcceEEEe
Q 000500 360 -NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKWQCMIV 434 (1460)
Q Consensus 360 -~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d----~~~L~~i~w~~VIv 434 (1460)
-+-+++|+-. -.....++|.|-|.++.. ...+..+. .||+
T Consensus 191 ~~vGL~TGDv~---------------------------------IN~~A~clvMTTEILRnMlyrg~~~~~~i~--~ViF 235 (1041)
T COG4581 191 DMVGLMTGDVS---------------------------------INPDAPCLVMTTEILRNMLYRGSESLRDIE--WVVF 235 (1041)
T ss_pred hhccceeccee---------------------------------eCCCCceEEeeHHHHHHHhccCcccccccc--eEEE
Confidence 1233343321 123455777776888653 34455554 4999
Q ss_pred ccccccCCcch-HHHHHH-Hhcccc-ceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhh
Q 000500 435 DEGHRLKNKDS-KLFSSL-KQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD 498 (1460)
Q Consensus 435 DEAHrlKN~~S-k~~~al-~~l~~~-~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~ 498 (1460)
||.|.+..... -.+..+ ..+... ..++||||= ++..+|.+|+..
T Consensus 236 DEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv--------------------~N~~EF~~Wi~~ 282 (1041)
T COG4581 236 DEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATV--------------------PNAEEFAEWIQR 282 (1041)
T ss_pred EeeeeccccccchhHHHHHHhcCCCCcEEEEeCCC--------------------CCHHHHHHHHHh
Confidence 99999976443 333333 333333 678999994 567788888764
No 146
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.62 E-value=3e-06 Score=109.31 Aligned_cols=121 Identities=18% Similarity=0.245 Sum_probs=98.7
Q ss_pred hhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeec
Q 000500 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1460)
Q Consensus 605 ~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlST 684 (1460)
....|+..+.+-+..+.+.|..|||-+..+..-++|..+|..+|+++..++...- ..-.++|.+ ++..+ .+-|+|
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~--AG~~G--aVTIAT 683 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAE--AGQPG--TVTIAT 683 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHh--cCCCC--cEEEec
Confidence 3467999999999999999999999999999999999999999999999987643 222344443 33334 468999
Q ss_pred cccccccCcc--------CCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEE
Q 000500 685 RAGGLGINLA--------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1460)
Q Consensus 685 rAgg~GINL~--------~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~Vy 730 (1460)
..+|+|.++. ..=+||.-..+=|...+.|..||++|.|..-....|
T Consensus 684 NMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 684 NMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred cCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 9999998875 335888889999999999999999999987665543
No 147
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=98.61 E-value=5.5e-08 Score=86.05 Aligned_cols=44 Identities=59% Similarity=0.902 Sum_probs=39.1
Q ss_pred CccchhhHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccchhh
Q 000500 862 NSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQMVSVEEDD 905 (1460)
Q Consensus 862 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~r~~~~~~~~~~ 905 (1460)
+..+++||++||+++|++.++++...||||||.||||+|...++
T Consensus 20 ~~~~~~yWe~LLr~~ye~~q~e~~~~LGKGKR~RKqV~y~~~~~ 63 (66)
T PF06465_consen 20 ESTDPNYWEKLLRHRYEQQQEEEEKALGKGKRSRKQVNYAEEDD 63 (66)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccc
Confidence 34689999999999999999999999999999999999865443
No 148
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.61 E-value=3.2e-06 Score=107.57 Aligned_cols=127 Identities=17% Similarity=0.238 Sum_probs=89.7
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccc-cHHHHHHHHHHHCC-----
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWAP----- 357 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~s-ll~qW~~E~~kw~P----- 357 (1460)
..+...|.- |.+.. ..|.+.-+..++|+|||.-.+....++...+ ++.+||+|.. ++.|-..-+.++.+
T Consensus 81 ~~~ws~QR~---WakR~-~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kg-kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~ 155 (1187)
T COG1110 81 FRPWSAQRV---WAKRL-VRGKSFAIIAPTGVGKTTFGLLMSLYLAKKG-KRVYIIVPTTTLVRQVYERLKKFAEDAGSL 155 (1187)
T ss_pred CCchHHHHH---HHHHH-HcCCceEEEcCCCCchhHHHHHHHHHHHhcC-CeEEEEecCHHHHHHHHHHHHHHHhhcCCc
Confidence 356667876 55444 4455555555999999977666555555554 6999999974 55788888888873
Q ss_pred CCeEEEEEcChhHHH--HHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEec
Q 000500 358 QMNVVMYVGTSQARN--IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1460)
Q Consensus 358 ~l~vvvy~G~~~~r~--~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvD 435 (1460)
...++ ||+.-..++ .+.+ +...+.|||+|||-..+.+....|.+.+|++|+||
T Consensus 156 ~~~~~-yh~~l~~~ekee~le------------------------~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVD 210 (1187)
T COG1110 156 DVLVV-YHSALPTKEKEEALE------------------------RIESGDFDILITTSQFLSKRFEELSKLKFDFIFVD 210 (1187)
T ss_pred ceeee-eccccchHHHHHHHH------------------------HHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEc
Confidence 33344 888733322 2111 11246899999999999999999999999999999
Q ss_pred ccccc
Q 000500 436 EGHRL 440 (1460)
Q Consensus 436 EAHrl 440 (1460)
.+..+
T Consensus 211 DVDA~ 215 (1187)
T COG1110 211 DVDAI 215 (1187)
T ss_pred cHHHH
Confidence 98754
No 149
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.61 E-value=4.7e-06 Score=106.58 Aligned_cols=373 Identities=18% Similarity=0.170 Sum_probs=202.4
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEc-cccHHHHHHHHHHHCCCCeEE
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQMNVV 362 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP-~sll~qW~~E~~kw~P~l~vv 362 (1460)
..|-+-|..+++-+..........+|.-.+|+|||-.-+.++...+..+ +-+||+|| -++.+|-...|+..+. .++.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-kqvLvLVPEI~Ltpq~~~rf~~rFg-~~v~ 274 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-KQVLVLVPEIALTPQLLARFKARFG-AKVA 274 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC-CEEEEEeccccchHHHHHHHHHHhC-CChh
Confidence 4688999999998876653456789999999999999998888887776 58999999 5889998888887774 8888
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEecccccc--
Q 000500 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL-- 440 (1460)
Q Consensus 363 vy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrl-- 440 (1460)
++|..-........+.- -..+...|||-|...+-.-.. +-.+|||||=|.-
T Consensus 275 vlHS~Ls~~er~~~W~~----------------------~~~G~~~vVIGtRSAlF~Pf~-----~LGLIIvDEEHD~sY 327 (730)
T COG1198 275 VLHSGLSPGERYRVWRR----------------------ARRGEARVVIGTRSALFLPFK-----NLGLIIVDEEHDSSY 327 (730)
T ss_pred hhcccCChHHHHHHHHH----------------------HhcCCceEEEEechhhcCchh-----hccEEEEeccccccc
Confidence 88877655543333210 012455688887765532222 3468999999974
Q ss_pred CCcchHHH-----HHHH-hccccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhch
Q 000500 441 KNKDSKLF-----SSLK-QYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1460)
Q Consensus 441 KN~~Sk~~-----~al~-~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p 514 (1460)
|..++..+ ..++ ....-..+|-||||- ++-+++. ... .
T Consensus 328 Kq~~~prYhARdvA~~Ra~~~~~pvvLgSATPS---LES~~~~---~~g------------------------------~ 371 (730)
T COG1198 328 KQEDGPRYHARDVAVLRAKKENAPVVLGSATPS---LESYANA---ESG------------------------------K 371 (730)
T ss_pred cCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCC---HHHHHhh---hcC------------------------------c
Confidence 33332222 1111 122345688899992 1111111 000 0
Q ss_pred hhhhhhhhhhhh-cCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCch-----hhHHHHHHHHHHHhCCcccccC
Q 000500 515 HLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQ-----ISLINVVMELRKLCCHPYMLEG 588 (1460)
Q Consensus 515 ~~LRR~K~dv~~-~LP~k~e~iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~-----~~l~nil~~LRk~c~hP~L~~~ 588 (1460)
+.+-++..-... .+|.....-+.-+....-..+-..+++.....+.++...- ..+... -+.+.|.|..-.+
T Consensus 372 y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~--l~C~~Cg~v~~Cp- 448 (730)
T COG1198 372 YKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPL--LLCRDCGYIAECP- 448 (730)
T ss_pred eEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccce--eecccCCCcccCC-
Confidence 111111111111 1332222211111111100011222222222233221110 000000 1233344433221
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHH-----HHHHHHHHHcCceEEEEecchhhHHHHHHHHHh--cCCeEEEEecCCCHH
Q 000500 589 VEPDIEDTNESFKQLLESSGKLQLL-----DKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGGA 661 (1460)
Q Consensus 589 ~e~~~~~~~~~~~~lv~~SgKl~~L-----~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~--~g~~~~ridGs~~~~ 661 (1460)
..+..+ .+....++|..= ..+-..+-+-|...|++.-. -.+.+++.|.. -+.++.|+|++++..
T Consensus 449 ------~Cd~~l-t~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~--GterieeeL~~~FP~~rv~r~d~Dtt~~ 519 (730)
T COG1198 449 ------NCDSPL-TLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGP--GTERIEEELKRLFPGARIIRIDSDTTRR 519 (730)
T ss_pred ------CCCcce-EEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecc--cHHHHHHHHHHHCCCCcEEEEccccccc
Confidence 111110 000000000000 00001111224445555432 23444444433 378999999998754
Q ss_pred H--HHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCC-------C-----hhhHHHHHHhhcccCCCCce
Q 000500 662 E--RQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-------N-----PHADLQAMARAHRLGQTNKV 727 (1460)
Q Consensus 662 e--Rq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdW-------N-----P~~d~QAigRahRiGQ~k~V 727 (1460)
. -..+++.|.++..+ |||.|....-|.|++....|.++|.|- - .+.+.|..||++|-+-.-.|
T Consensus 520 k~~~~~~l~~~~~ge~d---ILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~V 596 (730)
T COG1198 520 KGALEDLLDQFANGEAD---ILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEV 596 (730)
T ss_pred hhhHHHHHHHHhCCCCC---eeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeE
Confidence 3 46789999876665 899999999999999999998887652 1 35678999999998777777
Q ss_pred EEEEEecCC
Q 000500 728 MIFRLITRG 736 (1460)
Q Consensus 728 ~VyrLvt~~ 736 (1460)
.|--+-..+
T Consensus 597 vIQT~~P~h 605 (730)
T COG1198 597 VIQTYNPDH 605 (730)
T ss_pred EEEeCCCCc
Confidence 665544443
No 150
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.60 E-value=3.2e-06 Score=108.18 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=68.8
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecC-CCHHHHHHHHHHHhccCCCCeeEEeec
Q 000500 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGK-VGGAERQIRIDRFNAKNSSRFCFLLST 684 (1460)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs-~~~~eRq~~Id~Fn~~~s~~~vfLlST 684 (1460)
...|...+.+-+..+.+.|..|||-+..+..-+.|...|...|+++..++.. ...+.-.++|.+ ++..+ .+-|+|
T Consensus 421 ~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~G--aVTIAT 496 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKG--AVTIAT 496 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCC--cEEEec
Confidence 4678899999999999999999999999999999999999999999999997 333444455554 34444 468899
Q ss_pred cccccccCcc
Q 000500 685 RAGGLGINLA 694 (1460)
Q Consensus 685 rAgg~GINL~ 694 (1460)
..+|+|.++.
T Consensus 497 NMAGRGTDIk 506 (939)
T PRK12902 497 NMAGRGTDII 506 (939)
T ss_pred cCCCCCcCEe
Confidence 9999996653
No 151
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.59 E-value=1.6e-06 Score=113.31 Aligned_cols=75 Identities=19% Similarity=0.221 Sum_probs=58.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHh-CC-CCcEEEEEcc-ccHHHHHHHHHH
Q 000500 280 FLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ER-ISPHLVVAPL-STLRNWEREFAT 354 (1460)
Q Consensus 280 ~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~-~~-~~p~LIVvP~-sll~qW~~E~~k 354 (1460)
+++-..+||.|.+-+..+...+..+++++|-..+|+|||+.+|+....... .+ ..+++..+.+ +.+.|-.+|+++
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 344345799999999999999999999999999999999998876655443 32 2355555554 778999999998
No 152
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=98.58 E-value=2.1e-08 Score=87.37 Aligned_cols=49 Identities=41% Similarity=0.605 Sum_probs=42.4
Q ss_pred chhhhhhhccCCCCc---eEEEEEecccccccccccccccccc-hHHHHHHHH
Q 000500 193 TVDRILACRGEDDEK---EYLVKYKELSYDECYWEYESDISAF-QPEIERFIK 241 (1460)
Q Consensus 193 ~veRII~~r~~~~~~---eyLVKWkgL~Y~~~TWE~~~~~~~~-~~~i~~f~~ 241 (1460)
+|+|||++|...+.. +|||||+|+||++||||.+..+... +..|++|.+
T Consensus 2 ~Ve~Il~~r~~~~~~~~~~ylVkW~g~~~~~~tWe~~~~l~~~~~~li~~f~~ 54 (55)
T PF00385_consen 2 EVERILDHRVVKGGNKVYEYLVKWKGYPYSENTWEPEENLKNCFPELIEEFEK 54 (55)
T ss_dssp EEEEEEEEEEETTEESEEEEEEEETTSSGGGEEEEEGGGCSSHCHHHHHHHHH
T ss_pred EEEEEEEEEEeCCCcccEEEEEEECCCCCCCCeEeeHHHHhHhhHHHHHHHhC
Confidence 689999999766655 9999999999999999999888754 677999975
No 153
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.53 E-value=2.4e-08 Score=121.12 Aligned_cols=48 Identities=46% Similarity=1.101 Sum_probs=43.5
Q ss_pred cccccccCCCCCe---eecCCCCCcccccccCCCC--CCCCCCCCCCCccCCC
Q 000500 51 DDSCQACGESENL---MSCDTCTYAYHAKCLVPPL--KAPPSGSWRCPECVSP 98 (1460)
Q Consensus 51 ~~~C~~C~~~g~l---l~Cd~C~~~~H~~Cl~P~l--~~~p~~~W~C~~C~~~ 98 (1460)
.++|..|++.|.. +|||+|+++||+.||.||+ ..+|.|.|+|++|...
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 5699999999875 9999999999999999995 6789999999999753
No 154
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.48 E-value=3.7e-06 Score=110.92 Aligned_cols=89 Identities=17% Similarity=0.134 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeecccccccc
Q 000500 612 LLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGI 691 (1460)
Q Consensus 612 ~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GI 691 (1460)
.+.+.|..+...+.++||+....+++..+.+.|....++. ...|... .|.+++++|+..+.. +|+.|....+||
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEGV 708 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCCC
Confidence 3444444445566789988888888888888887655444 5556433 356789999874443 788899999999
Q ss_pred Ccc--CCCEEEEecCCC
Q 000500 692 NLA--TADTVIIYDSDW 706 (1460)
Q Consensus 692 NL~--~Ad~VIi~DsdW 706 (1460)
|++ .+..|||.-.|+
T Consensus 709 D~p~~~~~~viI~kLPF 725 (820)
T PRK07246 709 DFVQADRMIEVITRLPF 725 (820)
T ss_pred CCCCCCeEEEEEecCCC
Confidence 996 356677776553
No 155
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.48 E-value=1.2e-05 Score=104.79 Aligned_cols=104 Identities=17% Similarity=0.160 Sum_probs=76.8
Q ss_pred HHcCceEEEEecchhhHHHHHHHHHhcCCe-EEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccC--CC
Q 000500 621 KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQ-YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT--AD 697 (1460)
Q Consensus 621 ~~~g~KVLIFSq~~~~LdiLed~L~~~g~~-~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~--Ad 697 (1460)
...+.++|||...-.++..+.++|...... .....|..+ +...++.|.+...+ .|++.+....+|||++. +.
T Consensus 476 ~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~ 550 (654)
T COG1199 476 KASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDALR 550 (654)
T ss_pred hhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCee
Confidence 344558999999999999999999876553 444455543 34899999887665 48999999999999985 68
Q ss_pred EEEEecCCCChhh------------------------------HHHHHHhhcccCCCCceEE
Q 000500 698 TVIIYDSDWNPHA------------------------------DLQAMARAHRLGQTNKVMI 729 (1460)
Q Consensus 698 ~VIi~DsdWNP~~------------------------------d~QAigRahRiGQ~k~V~V 729 (1460)
.|||.-.||=+-. ..|++||+.|--+.+-|.|
T Consensus 551 ~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 551 LVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 8999877665221 2599999999555555443
No 156
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.43 E-value=3e-05 Score=104.17 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=64.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHH-H-HHHHH---HH
Q 000500 280 FLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR-N-WEREF---AT 354 (1460)
Q Consensus 280 ~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~-q-W~~E~---~k 354 (1460)
.+.+.+.||-|.+-++.+...+..+..+++-..+|+|||+..+.-+.........|++|.+++..|. | +.+++ .+
T Consensus 252 ~~~~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~ 331 (928)
T PRK08074 252 AMPKYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEKDIPLLQK 331 (928)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHhhHHHHHH
Confidence 4457789999999988888888888888888999999999876555443333445888888875554 4 44443 44
Q ss_pred HCC-CCeEEEEEcChh
Q 000500 355 WAP-QMNVVMYVGTSQ 369 (1460)
Q Consensus 355 w~P-~l~vvvy~G~~~ 369 (1460)
.++ .+++++..|...
T Consensus 332 ~~~~~~~~~~lKGr~n 347 (928)
T PRK08074 332 IFPFPVEAALLKGRSH 347 (928)
T ss_pred HcCCCceEEEEEcccc
Confidence 443 577777776543
No 157
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.42 E-value=1.4e-06 Score=107.05 Aligned_cols=152 Identities=20% Similarity=0.316 Sum_probs=100.3
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHH-HHHHHHHHhCCCCcEEEEEccccH-HHHHHHHHHHCCCCeE
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQMNV 361 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa-Ia~l~~L~~~~~~p~LIVvP~sll-~qW~~E~~kw~P~l~v 361 (1460)
.+|-|+|..++.-+ .++..+++..-+..|||+.| .|++..|+... +++.-.|-..| .|=.||+..-+.+ |
T Consensus 128 F~LDpFQ~~aI~Ci----dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ--RVIYTSPIKALSNQKYREl~~EF~D--V 199 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCI----DRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ--RVIYTSPIKALSNQKYRELLEEFKD--V 199 (1041)
T ss_pred cccCchHhhhhhhh----cCCceEEEEeecCCCcchHHHHHHHHHHHhcC--eEEeeChhhhhcchhHHHHHHHhcc--c
Confidence 57999999998655 88999999999999999987 45555665543 78888885444 5556777654422 2
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh----hhcccCCCcceEEEeccc
Q 000500 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----DSASLKPIKWQCMIVDEG 437 (1460)
Q Consensus 362 vvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~----d~~~L~~i~w~~VIvDEA 437 (1460)
-..+|+-. -......+|+|-+.++. ....++.+.| ||+||.
T Consensus 200 GLMTGDVT---------------------------------InP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEI 244 (1041)
T KOG0948|consen 200 GLMTGDVT---------------------------------INPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEI 244 (1041)
T ss_pred ceeeccee---------------------------------eCCCCceeeeHHHHHHHHHhccchHhheeee--EEeeee
Confidence 23333321 12345578888888865 3556677777 999999
Q ss_pred cccCCcchH-HH-HHHHhcc-ccceEeeccccccCCHHHHHHHHHhhcCCCCCChHHHHHHHhh
Q 000500 438 HRLKNKDSK-LF-SSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD 498 (1460)
Q Consensus 438 HrlKN~~Sk-~~-~al~~l~-~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~ 498 (1460)
|+++....- .+ ..+.-+. .-+-+.||||- ++..+|.+|...
T Consensus 245 HYMRDkERGVVWEETIIllP~~vr~VFLSATi--------------------PNA~qFAeWI~~ 288 (1041)
T KOG0948|consen 245 HYMRDKERGVVWEETIILLPDNVRFVFLSATI--------------------PNARQFAEWICH 288 (1041)
T ss_pred hhccccccceeeeeeEEeccccceEEEEeccC--------------------CCHHHHHHHHHH
Confidence 999864421 11 1112222 23457899993 466777777653
No 158
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.41 E-value=3.7e-05 Score=94.89 Aligned_cols=243 Identities=17% Similarity=0.251 Sum_probs=135.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhhc------CCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEE-EccccHHHH
Q 000500 276 HSPEFLSGGSLHPYQLEGLNFLRFSWSK------QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV-APLSTLRNW 348 (1460)
Q Consensus 276 ~~P~~~~g~~LrpyQlegvnwL~~~~~~------~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIV-vP~sll~qW 348 (1460)
..|. +..+-|.-.|+++|.|..+.... .-|.+|.|.-|.||--++..+|...+-.+.++.|.+ |...+-..-
T Consensus 256 alP~-i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDA 334 (1300)
T KOG1513|consen 256 ALPS-IDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDA 334 (1300)
T ss_pred eccc-CcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccch
Confidence 4455 56688999999999987554432 346789999999997776665554444555555544 556666677
Q ss_pred HHHHHHHC-CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc-----
Q 000500 349 EREFATWA-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----- 422 (1460)
Q Consensus 349 ~~E~~kw~-P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~----- 422 (1460)
.+.+.... +.+.|..+ ++ +. +. .+........+-.|+.+||..+..+..
T Consensus 335 ERDL~DigA~~I~V~al--nK--------~K--Ya-------------kIss~en~n~krGViFaTYtaLIGEs~~~~~k 389 (1300)
T KOG1513|consen 335 ERDLRDIGATGIAVHAL--NK--------FK--YA-------------KISSKENTNTKRGVIFATYTALIGESQGKGGK 389 (1300)
T ss_pred hhchhhcCCCCccceeh--hh--------cc--cc-------------cccccccCCccceeEEEeeHhhhhhccccCch
Confidence 77776654 22222211 11 10 00 001112234566799999999865422
Q ss_pred ---ccCC-Ccc------eEEEeccccccCC-------cchHHHHHHHhc----cccceEeeccccccCCHHHHHHHHHhh
Q 000500 423 ---SLKP-IKW------QCMIVDEGHRLKN-------KDSKLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFL 481 (1460)
Q Consensus 423 ---~L~~-i~w------~~VIvDEAHrlKN-------~~Sk~~~al~~l----~~~~rLLLTGTPlqNnl~EL~sLL~fL 481 (1460)
.|+. +.| .+||+||||+.|| ..++..+.+..+ ...+.+..|||-.. |=-++..+.
T Consensus 390 yrtR~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAs----EPrNMaYM~ 465 (1300)
T KOG1513|consen 390 YRTRFRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGAS----EPRNMAYMV 465 (1300)
T ss_pred HHHHHHHHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCC----Ccchhhhhh
Confidence 2221 244 4899999999999 345666666554 34566788888532 222333333
Q ss_pred cCCC------CCChHHHHHHHhhhh--hHHHHHHHHHhhchhhhhhhhhhhhhcCCCceeEEEeecCCHHHHHHHHHHHH
Q 000500 482 DAGK------FGSLEEFQEEFKDIN--QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILT 553 (1460)
Q Consensus 482 ~p~~------f~~~~~F~~~f~~~~--~~~~i~~L~~~L~p~~LRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~ 553 (1460)
..+. |+.+.+|......-. .-+.+.--.++-.-|+.|.+ .+......+-.|+|+++=++.|..-..
T Consensus 466 RLGlWGegtaf~eF~eFi~AvEkRGvGAMEIVAMDMK~rGmYiARQL------SFkgVsFrieEv~ls~eF~k~Yn~a~~ 539 (1300)
T KOG1513|consen 466 RLGLWGEGTAFPEFEEFIHAVEKRGVGAMEIVAMDMKLRGMYIARQL------SFKGVSFRIEEVPLSKEFRKVYNRAAE 539 (1300)
T ss_pred hhccccCCCcCccHHHHHHHHHhcCCceeeeeehhhhhhhhhhhhhc------cccCceEEEEecccCHHHHHHHHHHHH
Confidence 3333 555555544332100 00111101111111222211 234456778889999999999986544
Q ss_pred H
Q 000500 554 R 554 (1460)
Q Consensus 554 ~ 554 (1460)
-
T Consensus 540 L 540 (1300)
T KOG1513|consen 540 L 540 (1300)
T ss_pred H
Confidence 3
No 159
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.30 E-value=1.5e-05 Score=87.47 Aligned_cols=45 Identities=29% Similarity=0.440 Sum_probs=42.9
Q ss_pred EeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCC
Q 000500 681 LLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1460)
Q Consensus 681 LlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k 725 (1460)
|++|...|.|+++...+.||.||.+-.+..|+.+.|||+|.|.+-
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 789999999999999999999999999999999999999999654
No 160
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.30 E-value=0.00012 Score=93.28 Aligned_cols=79 Identities=15% Similarity=0.084 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHH-HHHhCCCCcEEEEEcc-ccHHHHHHHHHHHC-----CCCeEE
Q 000500 290 QLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGERISPHLVVAPL-STLRNWEREFATWA-----PQMNVV 362 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~-~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~-----P~l~vv 362 (1460)
|.+-+.++...+..+...++-..+|+|||+..+.-+. ++......++||++|. .+..|+.+++.... ..++++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~ 81 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAG 81 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEE
Confidence 7777778888888888889999999999988765553 3332234599999995 66788888877654 256677
Q ss_pred EEEcCh
Q 000500 363 MYVGTS 368 (1460)
Q Consensus 363 vy~G~~ 368 (1460)
+..|..
T Consensus 82 ~lkGr~ 87 (636)
T TIGR03117 82 FFPGSQ 87 (636)
T ss_pred EEECCc
Confidence 766644
No 161
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.25 E-value=1e-05 Score=105.49 Aligned_cols=143 Identities=19% Similarity=0.310 Sum_probs=90.8
Q ss_pred CcEEEEecCCCCcHHHHHHHHHHHHhC-CCCcEEEEEccccHH-HHHHH---------HHHHCCC--CeEEEEEcChh--
Q 000500 305 THVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTLR-NWERE---------FATWAPQ--MNVVMYVGTSQ-- 369 (1460)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L~~~-~~~p~LIVvP~sll~-qW~~E---------~~kw~P~--l~vvvy~G~~~-- 369 (1460)
.+..+.+++|+|||.+++..+.+|... +...||||||...+. ....- |...+++ +...+|...+.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 467899999999999999999999876 556999999974442 22222 2222322 33444543321
Q ss_pred -HH----HHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhc--c------cC--CCcce----
Q 000500 370 -AR----NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--S------LK--PIKWQ---- 430 (1460)
Q Consensus 370 -~r----~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~--~------L~--~i~w~---- 430 (1460)
.| ..++.+- ..........+|+|+|.+++.++.. . +. ..+|+
T Consensus 140 ~gr~~~~~~i~~Fa-------------------~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~ 200 (986)
T PRK15483 140 SGRKNFPAQLSNFV-------------------KASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAA 200 (986)
T ss_pred cccccChHHHHHHH-------------------hccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHh
Confidence 11 1222210 0000112356899999999876421 1 11 23443
Q ss_pred ---EEEeccccccCCcchHHHHHHHhccccceEeeccccc
Q 000500 431 ---CMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPL 467 (1460)
Q Consensus 431 ---~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPl 467 (1460)
+||+||+|++.. ..+...++..+...+.|..|||--
T Consensus 201 ~~PivIiDEPh~~~~-~~k~~~~i~~lnpl~~lrysAT~~ 239 (986)
T PRK15483 201 TRPVVIIDEPHRFPR-DNKFYQAIEALKPQMIIRFGATFP 239 (986)
T ss_pred CCCEEEEECCCCCCc-chHHHHHHHhcCcccEEEEeeecC
Confidence 799999999965 345678889999999999999963
No 162
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.23 E-value=6.5e-05 Score=95.72 Aligned_cols=114 Identities=11% Similarity=0.293 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccc
Q 000500 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1460)
Q Consensus 607 SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrA 686 (1460)
+....++..|+..| ..|++|-|||....+.+++++++...+.++..++|..+..+. +.+ ..+-+++=|.+
T Consensus 266 ~~~~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W-----~~~~VviYT~~ 335 (824)
T PF02399_consen 266 NDETTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW-----KKYDVVIYTPV 335 (824)
T ss_pred cchhhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc-----cceeEEEEece
Confidence 33445666666665 469999999999999999999999999999999887765522 222 33457888889
Q ss_pred cccccCccC--CCEEEEe--cCCCChhh--HHHHHHhhcccCCCCceEEEE
Q 000500 687 GGLGINLAT--ADTVIIY--DSDWNPHA--DLQAMARAHRLGQTNKVMIFR 731 (1460)
Q Consensus 687 gg~GINL~~--Ad~VIi~--DsdWNP~~--d~QAigRahRiGQ~k~V~Vyr 731 (1460)
...|+++-. .|.|+.| .....|.. ..|.+||+..+.. +++.||.
T Consensus 336 itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~~ 385 (824)
T PF02399_consen 336 ITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVYI 385 (824)
T ss_pred EEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEEE
Confidence 999999863 5777766 33344554 5899999988764 4555553
No 163
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.23 E-value=0.00021 Score=90.81 Aligned_cols=161 Identities=19% Similarity=0.204 Sum_probs=106.9
Q ss_pred CCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhC-CCCcEEEEEc-cccHHHHHHHHHH-H-CCCCeE
Q 000500 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP-LSTLRNWEREFAT-W-APQMNV 361 (1460)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~-~~~p~LIVvP-~sll~qW~~E~~k-w-~P~l~v 361 (1460)
.-.+|.+-+. ....+...+|...+-.|||...--++...++. ..+-++-|+| ++++.|-..++.. + ++.+..
T Consensus 512 Pd~WQ~elLD----svDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~r 587 (1330)
T KOG0949|consen 512 PDEWQRELLD----SVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLR 587 (1330)
T ss_pred CcHHHHHHhh----hhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCcccc
Confidence 3457877654 34788999999999999999988777776654 4568999999 5777777666643 3 222221
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcc---cCC--CcceEEEecc
Q 000500 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS---LKP--IKWQCMIVDE 436 (1460)
Q Consensus 362 vvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~---L~~--i~w~~VIvDE 436 (1460)
.+ .-.-...++|. ......+|+||-.+.+..-.-. -.. -+..+||+||
T Consensus 588 g~----sl~g~ltqEYs-----------------------inp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDE 640 (1330)
T KOG0949|consen 588 GV----SLLGDLTQEYS-----------------------INPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDE 640 (1330)
T ss_pred ch----hhHhhhhHHhc-----------------------CCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEech
Confidence 11 11111222321 1234678999999877542111 111 1346899999
Q ss_pred ccccCCc-chHHHHHHHhccccceEeeccccccCCHHHHHHHHH
Q 000500 437 GHRLKNK-DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH 479 (1460)
Q Consensus 437 AHrlKN~-~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~ 479 (1460)
+|.+.|. .+.....+..+....-|+|||| ++|+..+..-++
T Consensus 641 VH~iG~~ed~l~~Eqll~li~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 641 VHLIGNEEDGLLWEQLLLLIPCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred hhhccccccchHHHHHHHhcCCCeeEEecc--cCCHHHHHHHHH
Confidence 9999885 4667777777777788999999 477777776666
No 164
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=98.14 E-value=1.3e-06 Score=75.90 Aligned_cols=49 Identities=41% Similarity=0.650 Sum_probs=41.6
Q ss_pred chhhhhhhccCC--CCceEEEEEecccccccccccccccccchHHHHHHHH
Q 000500 193 TVDRILACRGED--DEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (1460)
Q Consensus 193 ~veRII~~r~~~--~~~eyLVKWkgL~Y~~~TWE~~~~~~~~~~~i~~f~~ 241 (1460)
.|++||++|... +..+|||||+|++|++||||....+......++.|..
T Consensus 4 ~ve~Il~~r~~~~~~~~~y~VkW~g~~~~~~tWe~~~~l~~~~~~i~~~~~ 54 (55)
T cd00024 4 EVEKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEENLEDCKELIDEFKK 54 (55)
T ss_pred eEeeeeeeeecCCCCcEEEEEEECCCCCccCccccHHHhCchHHHHHHHHh
Confidence 359999999766 7889999999999999999998877655677888763
No 165
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.14 E-value=8.5e-07 Score=108.24 Aligned_cols=47 Identities=34% Similarity=0.914 Sum_probs=41.2
Q ss_pred cccccccCCCC---CeeecCCCCCc-ccccccCCCCCCCCCCCCCCCccCC
Q 000500 51 DDSCQACGESE---NLMSCDTCTYA-YHAKCLVPPLKAPPSGSWRCPECVS 97 (1460)
Q Consensus 51 ~~~C~~C~~~g---~ll~Cd~C~~~-~H~~Cl~P~l~~~p~~~W~C~~C~~ 97 (1460)
..-|.+|...+ .||+||.|..+ ||++||+|+|-.+|-+.|+|+.|..
T Consensus 215 ~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 215 EVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred cccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 34488887654 39999999999 9999999999999999999999974
No 166
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.13 E-value=0.00038 Score=90.93 Aligned_cols=91 Identities=15% Similarity=0.237 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhc-CCeEEEEecCCCHHHHHHHHHHHhcc-CCCCeeEEeecccccc
Q 000500 612 LLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFNAK-NSSRFCFLLSTRAGGL 689 (1460)
Q Consensus 612 ~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~-g~~~~ridGs~~~~eRq~~Id~Fn~~-~s~~~vfLlSTrAgg~ 689 (1460)
.+.+.|..+...+.++|||.....+++.+.+.|... ++. +.+.|. ..|.++++.|.+. ..+.-.+|+++....+
T Consensus 522 ~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~E 597 (697)
T PRK11747 522 EMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAE 597 (697)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccc
Confidence 444444444445556888888888888888888642 333 344554 3577889877642 0011136788899999
Q ss_pred ccCccC--CCEEEEecCCC
Q 000500 690 GINLAT--ADTVIIYDSDW 706 (1460)
Q Consensus 690 GINL~~--Ad~VIi~DsdW 706 (1460)
|||++. +..|||.-.|+
T Consensus 598 GVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 598 GLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred cccCCCCceEEEEEEcCCC
Confidence 999984 78999987776
No 167
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=97.99 E-value=0.00046 Score=89.85 Aligned_cols=129 Identities=19% Similarity=0.268 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHHc--CceEEEEecchhhHHHHHHHHH----hcC---CeEEEEecCCCHHHHHHHHHHHhccCCCCe
Q 000500 608 GKLQLLDKMMVKLKEQ--GHRVLIYSQFQHMLDLLEDYLT----FKK---WQYERIDGKVGGAERQIRIDRFNAKNSSRF 678 (1460)
Q Consensus 608 gKl~~L~klL~~l~~~--g~KVLIFSq~~~~LdiLed~L~----~~g---~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~ 678 (1460)
-...++..++..+.+. ...||||-.-..-+..+.+.|. ... +-...++++++..+.+.+ |+.+..+..
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~R 471 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTR 471 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcc
Confidence 3455666666666544 3589999887766666666554 232 567788999998777665 788888877
Q ss_pred eEEeeccccccccCccCCCEEE--------EecCCC----------ChhhHHHHHHhhcccCCCCceEEEEEecCCCHHH
Q 000500 679 CFLLSTRAGGLGINLATADTVI--------IYDSDW----------NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1460)
Q Consensus 679 vfLlSTrAgg~GINL~~Ad~VI--------i~DsdW----------NP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE 740 (1460)
-++++|..+..+|.+.++=.|| .||+-- +-++-.||.|||+| ..+-.+|+|+++.-.+.
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSRYEK 548 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhhhhh
Confidence 7999999999999998876665 344422 23344677777766 66778999999876554
Q ss_pred HH
Q 000500 741 RM 742 (1460)
Q Consensus 741 ~I 742 (1460)
.+
T Consensus 549 ~~ 550 (924)
T KOG0920|consen 549 LM 550 (924)
T ss_pred cc
Confidence 44
No 168
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.97 E-value=2e-06 Score=73.78 Aligned_cols=44 Identities=43% Similarity=1.192 Sum_probs=37.4
Q ss_pred cccccCC---CCCeeecCCCCCcccccccCCCCC--CCCCCCCCCCccC
Q 000500 53 SCQACGE---SENLMSCDTCTYAYHAKCLVPPLK--APPSGSWRCPECV 96 (1460)
Q Consensus 53 ~C~~C~~---~g~ll~Cd~C~~~~H~~Cl~P~l~--~~p~~~W~C~~C~ 96 (1460)
+|.+|+. .+.+|.|+.|.+.||+.|+.|+.. ..+.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 5888887 456999999999999999999987 4445699999996
No 169
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=97.97 E-value=0.00055 Score=85.04 Aligned_cols=110 Identities=19% Similarity=0.214 Sum_probs=77.9
Q ss_pred eEEEEecchhhHHHHHHHHHh----cCC----eEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCC
Q 000500 626 RVLIYSQFQHMLDLLEDYLTF----KKW----QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATAD 697 (1460)
Q Consensus 626 KVLIFSq~~~~LdiLed~L~~----~g~----~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad 697 (1460)
-+|||=.-..-.+.+.+.|.. .+- -+.-+.|+.+.++..++ |...+.+..-+++||..+...|.+...-
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecceE
Confidence 588887766655555555533 221 24678999998876555 6666656667899999999999999877
Q ss_pred EEEE----ecCCCCh-----------hhHHHHHHhhcccCCCCceEEEEEecCCCH
Q 000500 698 TVII----YDSDWNP-----------HADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (1460)
Q Consensus 698 ~VIi----~DsdWNP-----------~~d~QAigRahRiGQ~k~V~VyrLvt~~Ti 738 (1460)
.||= =-..||| -.-.||..|++|-|.+.+..+|||+++.-+
T Consensus 337 YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 337 YVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred EEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 7651 1113444 244678888888888999999999998766
No 170
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.97 E-value=0.00079 Score=86.66 Aligned_cols=113 Identities=20% Similarity=0.206 Sum_probs=88.1
Q ss_pred hhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeec
Q 000500 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1460)
Q Consensus 605 ~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlST 684 (1460)
....|+..+.+-+....+.|..|||-+..+..-+.|...|...|++...++..-. .|+.-|-.+ ++..+ .+-++|
T Consensus 410 t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~-AG~~g--aVTiAT 484 (822)
T COG0653 410 TEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQ-AGQPG--AVTIAT 484 (822)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhh-cCCCC--cccccc
Confidence 3567899999999999999999999999999999999999999999999988765 333333222 33333 357899
Q ss_pred cccccccCcc-CCC----------EEEEecCCCChhhHHHHHHhhcccC
Q 000500 685 RAGGLGINLA-TAD----------TVIIYDSDWNPHADLQAMARAHRLG 722 (1460)
Q Consensus 685 rAgg~GINL~-~Ad----------~VIi~DsdWNP~~d~QAigRahRiG 722 (1460)
.-+|+|-++. ..+ +||--+-.=+-..+.|--||++|.|
T Consensus 485 NMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG 533 (822)
T COG0653 485 NMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG 533 (822)
T ss_pred ccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC
Confidence 9999999986 333 4555555555666779999999999
No 171
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.94 E-value=6.1e-05 Score=88.24 Aligned_cols=72 Identities=18% Similarity=0.103 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHH-HHHhCCC----CcEEEEEcc-ccHHHHHHHHHHH
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGERI----SPHLVVAPL-STLRNWEREFATW 355 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~-~L~~~~~----~p~LIVvP~-sll~qW~~E~~kw 355 (1460)
.+.||.|++-+.-+...+..++.+|+-..+|+|||+..+..+. ++..... .+++++++. +.+.+=..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4569999999998888889999999999999999999876664 4343332 277777775 4445555666554
No 172
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.94 E-value=6.1e-05 Score=88.24 Aligned_cols=72 Identities=18% Similarity=0.103 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHH-HHHhCCC----CcEEEEEcc-ccHHHHHHHHHHH
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGERI----SPHLVVAPL-STLRNWEREFATW 355 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~-~L~~~~~----~p~LIVvP~-sll~qW~~E~~kw 355 (1460)
.+.||.|++-+.-+...+..++.+|+-..+|+|||+..+..+. ++..... .+++++++. +.+.+=..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4569999999998888889999999999999999999876664 4343332 277777775 4445555666554
No 173
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=97.91 E-value=5.6e-06 Score=71.75 Aligned_cols=48 Identities=38% Similarity=0.644 Sum_probs=41.7
Q ss_pred hhhhhhhc-cCCCCceEEEEEecccccccccccccccccchHHHHHHHH
Q 000500 194 VDRILACR-GEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (1460)
Q Consensus 194 veRII~~r-~~~~~~eyLVKWkgL~Y~~~TWE~~~~~~~~~~~i~~f~~ 241 (1460)
|+|||++| ...+..+|||||+|++|.++||+....+..+...+.+|..
T Consensus 4 v~~Il~~r~~~~~~~~ylVkW~g~~~~~~tW~~~~~l~~~~~~v~~~~~ 52 (55)
T smart00298 4 VEKILDHRWKKKGELEYLVKWKGYSYSEDTWEPEENLLNCSKKLDNYKK 52 (55)
T ss_pred hheeeeeeecCCCcEEEEEEECCCCCccCceeeHHHHHHHHHHHHHHHH
Confidence 89999999 7778889999999999999999988776556777888875
No 174
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.90 E-value=0.00028 Score=86.61 Aligned_cols=94 Identities=18% Similarity=0.195 Sum_probs=65.5
Q ss_pred CCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEec----CCCCh-----------hhHH
Q 000500 648 KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYD----SDWNP-----------HADL 712 (1460)
Q Consensus 648 g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~D----sdWNP-----------~~d~ 712 (1460)
++.+.-|....+.+-..++ |+....+...++++|..+...|.++....||=.. .-+|| ..-.
T Consensus 597 ~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 4556666666665544333 7766666677899999999999999888777421 12333 3334
Q ss_pred HHHHhhcccCCCCceEEEEEecCCCHHHHHHH
Q 000500 713 QAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 744 (1460)
Q Consensus 713 QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~e 744 (1460)
+|-.|++|-|.+.+-..|||+|+.++...|+.
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~ 705 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYTEDAYKNEMLP 705 (1042)
T ss_pred cchhhccccCCCCCcceeeehhhhHHHhhccc
Confidence 55566666667889999999999998887764
No 175
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.89 E-value=7.6e-05 Score=77.25 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=69.1
Q ss_pred hcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcC
Q 000500 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYF 381 (1460)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~kw~P~l~vvvy~G~~~~r~~i~~~e~~~ 381 (1460)
.++.-.+|-.-.|.|||-..|.-+..-.-....++||+.|.-.+- +|+.+...+..+ -++-..-.+
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva---~em~~aL~~~~~-~~~t~~~~~---------- 67 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVA---EEMYEALKGLPV-RFHTNARMR---------- 67 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHH---HHHHHHTTTSSE-EEESTTSS-----------
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHH---HHHHHHHhcCCc-ccCceeeec----------
Confidence 456667888999999998776533322122335999999986553 344444434442 222111100
Q ss_pred CCCchhhhccccCccccccccccccccEEEecHHHHHhh-hcccCCCcceEEEeccccccCCcchHHHHH-HHhccc---
Q 000500 382 PKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD-SASLKPIKWQCMIVDEGHRLKNKDSKLFSS-LKQYST--- 456 (1460)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d-~~~L~~i~w~~VIvDEAHrlKN~~Sk~~~a-l~~l~~--- 456 (1460)
.....--|-+++|.++... .......+|++||+||||-. ...|-.... +..+..
T Consensus 68 --------------------~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~ 126 (148)
T PF07652_consen 68 --------------------THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGE 126 (148)
T ss_dssp -----------------------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS
T ss_pred --------------------cccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccC
Confidence 0112344777888887653 22344568999999999964 334433333 223321
Q ss_pred cceEeecccc
Q 000500 457 RHRVLLTGTP 466 (1460)
Q Consensus 457 ~~rLLLTGTP 466 (1460)
...+++||||
T Consensus 127 ~~~i~mTATP 136 (148)
T PF07652_consen 127 AKVIFMTATP 136 (148)
T ss_dssp -EEEEEESS-
T ss_pred eeEEEEeCCC
Confidence 2578999999
No 176
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.82 E-value=3.2e-05 Score=88.77 Aligned_cols=90 Identities=19% Similarity=0.251 Sum_probs=72.0
Q ss_pred HHHHHHhccCCCCeeEEeeccccccccCccCC--------CEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCC
Q 000500 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATA--------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1460)
Q Consensus 665 ~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~A--------d~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~ 736 (1460)
...+.|+++... ++|-++||+.||.|++- .+-|+++++|+....+|.+||+||.||.....+..+++.-
T Consensus 52 ~e~~~F~~g~k~---v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGEKD---VAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCCce---EEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 456789875432 45557999999999952 2457899999999999999999999999876655666777
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 000500 737 SIEERMMQMTKKKMVLEHLVV 757 (1460)
Q Consensus 737 TiEE~I~e~a~~K~~L~~~Vi 757 (1460)
..|.+......+|+.--.++.
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt 149 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALT 149 (278)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 789999999999887655554
No 177
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=97.81 E-value=5.1e-05 Score=88.41 Aligned_cols=95 Identities=17% Similarity=0.255 Sum_probs=85.8
Q ss_pred CceEEEEecchhhHHHHHHHHHhc---CCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEE
Q 000500 624 GHRVLIYSQFQHMLDLLEDYLTFK---KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1460)
Q Consensus 624 g~KVLIFSq~~~~LdiLed~L~~~---g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VI 700 (1460)
-.|.||||....-.|-|++++..+ .|+.+.++|...+.+|.+-++.|.+. .+.|||+|.+++.||+++..-.+|
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~---dvkflictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKF---DVKFLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhc---CeEEEEEehhhhccccccCCceEE
Confidence 458999999999999999999775 46788999999999999999999763 455999999999999999999999
Q ss_pred EecCCCChhhHHHHHHhhccc
Q 000500 701 IYDSDWNPHADLQAMARAHRL 721 (1460)
Q Consensus 701 i~DsdWNP~~d~QAigRahRi 721 (1460)
....+-.-++|..||||++|.
T Consensus 582 nvtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EEecCcccchhhhhhhccchh
Confidence 999999999999999988874
No 178
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=97.80 E-value=0.00024 Score=90.83 Aligned_cols=154 Identities=19% Similarity=0.177 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHH-HHHHHHHHC--CCCeE
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN-WEREFATWA--PQMNV 361 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~q-W~~E~~kw~--P~l~v 361 (1460)
.|+++|.+.+.- .....+++.|.+..++-|||+.+=-++....-...+..|.+.|--.+.+ =..++..+. -+++|
T Consensus 223 ~~fewq~ecls~--~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~v 300 (1008)
T KOG0950|consen 223 KLFEWQAECLSL--PRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPV 300 (1008)
T ss_pred HHHHHHHHHhcc--hhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCcc
Confidence 578888888752 2224789999999999999998743333322222346777888544433 233333333 13445
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCC----CcceEEEeccc
Q 000500 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKP----IKWQCMIVDEG 437 (1460)
Q Consensus 362 vvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~----i~w~~VIvDEA 437 (1460)
-.|.|.-. +. .....-+|.|+|.|........|-. -.-.+|||||-
T Consensus 301 e~y~g~~~------------p~------------------~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdEl 350 (1008)
T KOG0950|consen 301 EEYAGRFP------------PE------------------KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDEL 350 (1008)
T ss_pred hhhcccCC------------CC------------------CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeee
Confidence 44543211 11 1123457899999988776554422 13468999999
Q ss_pred cccCC--cchHHHHHHHhc----ccc--ceEeeccccccCC
Q 000500 438 HRLKN--KDSKLFSSLKQY----STR--HRVLLTGTPLQNN 470 (1460)
Q Consensus 438 HrlKN--~~Sk~~~al~~l----~~~--~rLLLTGTPlqNn 470 (1460)
|-+.. ....+-..|..+ ... ..+++|||-..|.
T Consensus 351 hmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~ 391 (1008)
T KOG0950|consen 351 HMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNS 391 (1008)
T ss_pred eeeeccccchHHHHHHHHHHHhccccceeEeeeecccCChH
Confidence 99843 333333333332 122 2589999964443
No 179
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.80 E-value=0.011 Score=78.08 Aligned_cols=189 Identities=12% Similarity=0.147 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHhh----hcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCC-cEEEEEcc-ccHHHHHHHHHHHC--CC
Q 000500 287 HPYQLEGLNFLRFSW----SKQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STLRNWEREFATWA--PQ 358 (1460)
Q Consensus 287 rpyQlegvnwL~~~~----~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~-p~LIVvP~-sll~qW~~E~~kw~--P~ 358 (1460)
+-+|-.+++.+...- ..|--||--..||.|||+.=.-+++.|.....+ ++-|..=+ ++.-|=-.++++-. .+
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~~ 489 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLSD 489 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCCc
Confidence 448888887764422 233346667799999999988888888877766 66665554 44456666665533 34
Q ss_pred CeEEEEEcChhHHHHHHHhhhcC----CCCchh--hh---------ccccCcc--------c--cccccccccccEEEec
Q 000500 359 MNVVMYVGTSQARNIIREYEFYF----PKNPKK--VK---------KKKSGQV--------V--SESKQDRIKFDVLLTS 413 (1460)
Q Consensus 359 l~vvvy~G~~~~r~~i~~~e~~~----~~~~~~--~~---------~~~~~~~--------~--~~~~~~~~~fdVvItS 413 (1460)
-...|..|+...++.....+--. ..++.. .. -...|.+ . ...........|+|+|
T Consensus 490 ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~T 569 (1110)
T TIGR02562 490 DDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVCT 569 (1110)
T ss_pred cceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEec
Confidence 56778888888877653211100 000000 00 0000000 0 0011122344688888
Q ss_pred HHHHHhhhcccC---------CCcceEEEeccccccCCcchHHH-HHHH--hccccceEeeccccccCCHHHHH
Q 000500 414 YEMINLDSASLK---------PIKWQCMIVDEGHRLKNKDSKLF-SSLK--QYSTRHRVLLTGTPLQNNLDELF 475 (1460)
Q Consensus 414 Ye~l~~d~~~L~---------~i~w~~VIvDEAHrlKN~~Sk~~-~al~--~l~~~~rLLLTGTPlqNnl~EL~ 475 (1460)
.+.+..-...++ .+-=..|||||+|-+-....... ..+. ..-....++||||--..-...|+
T Consensus 570 IDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~ 643 (1110)
T TIGR02562 570 IDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTLF 643 (1110)
T ss_pred HHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 887765443222 12235799999998744333222 2222 22356789999996544444443
No 180
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.67 E-value=0.0018 Score=84.74 Aligned_cols=113 Identities=17% Similarity=0.255 Sum_probs=79.0
Q ss_pred CceEEEEecchhhHHHHHHHHHh----cCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEE
Q 000500 624 GHRVLIYSQFQHMLDLLEDYLTF----KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1460)
Q Consensus 624 g~KVLIFSq~~~~LdiLed~L~~----~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~V 699 (1460)
..-+|||-.-....+...+.|.. ....++-+.|..+.++..++ |+....++.-+++||..+..+|++.....|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 34689998877777777777765 45788999999999887775 655455544489999999999999998887
Q ss_pred EEe----cCCCChhhH-----------HHHHHhhcccCCCCceEEEEEecCCCHH
Q 000500 700 IIY----DSDWNPHAD-----------LQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1460)
Q Consensus 700 Ii~----DsdWNP~~d-----------~QAigRahRiGQ~k~V~VyrLvt~~TiE 739 (1460)
|=- .+-|||..- ..|.-|++|-|.+.+-.+|||.+++..+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 631 112333222 1244445555557788999999986555
No 182
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=97.66 E-value=6e-06 Score=71.94 Aligned_cols=54 Identities=33% Similarity=0.706 Sum_probs=38.5
Q ss_pred ccccccccccccCccCCCCcccccchhhhHHHhhhhccCCCcccccccchhhHHHhhhcChhHHHHHHhHhhh
Q 000500 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (1460)
Q Consensus 101 diekiL~~R~~p~~~~~~~~~~~~~k~~~~~EYlVKWkg~Sy~HctWvpe~~L~~~~~~~~~~k~kl~~f~kk 173 (1460)
.|++|+++|....... ..+|||||+|++|.||||+|+..|... .| ..++.|.++
T Consensus 2 ~Ve~Il~~r~~~~~~~-------------~~~ylVkW~g~~~~~~tWe~~~~l~~~---~~---~li~~f~~r 55 (55)
T PF00385_consen 2 EVERILDHRVVKGGNK-------------VYEYLVKWKGYPYSENTWEPEENLKNC---FP---ELIEEFEKR 55 (55)
T ss_dssp EEEEEEEEEEETTEES-------------EEEEEEEETTSSGGGEEEEEGGGCSSH---CH---HHHHHHHHH
T ss_pred EEEEEEEEEEeCCCcc-------------cEEEEEEECCCCCCCCeEeeHHHHhHh---hH---HHHHHHhCC
Confidence 3678888874332111 358999999999999999999988643 23 356777653
No 183
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.62 E-value=2.1e-05 Score=92.50 Aligned_cols=51 Identities=43% Similarity=0.978 Sum_probs=44.0
Q ss_pred cccccccccccccCCCCC---eeecCCCCCcccccccCCCCCCCCCCC----CCCCcc
Q 000500 45 VRIDAKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGS----WRCPEC 95 (1460)
Q Consensus 45 ~~~~~~~~~C~~C~~~g~---ll~Cd~C~~~~H~~Cl~P~l~~~p~~~----W~C~~C 95 (1460)
.....-...|.+|....+ |+.||+|...||+.||.|||+.+|..+ |.|.+|
T Consensus 538 s~~~a~~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC 595 (707)
T KOG0957|consen 538 SAPKAMNYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSEC 595 (707)
T ss_pred ccccccceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeeccc
Confidence 334455677999998876 899999999999999999999999654 999999
No 184
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.59 E-value=2.6e-05 Score=86.17 Aligned_cols=56 Identities=23% Similarity=0.613 Sum_probs=47.3
Q ss_pred cchhhhcccccccccccccCCCC---CeeecCCCCCcccccccCCCCCCCCCCCCCCC-ccC
Q 000500 39 EKFERIVRIDAKDDSCQACGESE---NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCP-ECV 96 (1460)
Q Consensus 39 ~~~~~~~~~~~~~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~-~C~ 96 (1460)
+-.+-..|.+..+..|.+|+++. ++++||.|+|+||..|+ .|..+|.|.|.|. .|.
T Consensus 302 ~~~KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CV--GL~~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 302 GQYKTYFWKCSSCELCRICLGPVIESEHLFCDVCDRGPHTLCV--GLQDLPRGEWICDMRCR 361 (381)
T ss_pred hHHhhcchhhcccHhhhccCCcccchheeccccccCCCCcccc--ccccccCccchhhhHHH
Confidence 33445667888899999999864 49999999999999999 9999999999997 343
No 185
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.55 E-value=0.00019 Score=86.74 Aligned_cols=100 Identities=21% Similarity=0.240 Sum_probs=79.8
Q ss_pred HcCceEEEEecchhhHHHHHHHHHhcCCe-EEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEE
Q 000500 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQ-YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1460)
Q Consensus 622 ~~g~KVLIFSq~~~~LdiLed~L~~~g~~-~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VI 700 (1460)
..|.-|+-||.. -+--+...+..+|.. .+.|.|+.+++.|.+.-..||++.+. +-+|++|.|.|.|+|| ..++||
T Consensus 356 k~GDCvV~FSkk--~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e-~dvlVAsDAIGMGLNL-~IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSKK--DIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNE-CDVLVASDAIGMGLNL-NIRRII 431 (700)
T ss_pred CCCCeEEEeehh--hHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCc-cceEEeeccccccccc-ceeEEE
Confidence 468899999864 223345556666665 99999999999999999999986654 4589999999999998 478899
Q ss_pred EecCC---------CChhhHHHHHHhhcccCCCC
Q 000500 701 IYDSD---------WNPHADLQAMARAHRLGQTN 725 (1460)
Q Consensus 701 i~Dsd---------WNP~~d~QAigRahRiGQ~k 725 (1460)
|++.- -.-.+..|.-|||+|.|.+-
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~ 465 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKY 465 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccCC
Confidence 98763 44567789999999998763
No 186
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.55 E-value=4.1e-05 Score=79.12 Aligned_cols=28 Identities=46% Similarity=1.066 Sum_probs=26.0
Q ss_pred cccccccCCCCCCCCCCCCCCCccCCCC
Q 000500 72 AYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1460)
Q Consensus 72 ~~H~~Cl~P~l~~~p~~~W~C~~C~~~~ 99 (1460)
+||+.||+|||..+|+|+|+||.|....
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~ 28 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEK 28 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCC
Confidence 5999999999999999999999998654
No 187
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=97.49 E-value=3.4e-05 Score=66.97 Aligned_cols=51 Identities=35% Similarity=0.686 Sum_probs=37.7
Q ss_pred ccccccccccccCccCCCCcccccchhhhHHHhhhhccCCCcccccccchhhHHHhhhcChhHHHHHHhHhh
Q 000500 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHR 172 (1460)
Q Consensus 101 diekiL~~R~~p~~~~~~~~~~~~~k~~~~~EYlVKWkg~Sy~HctWvpe~~L~~~~~~~~~~k~kl~~f~k 172 (1460)
.+++|++.|.... ....+|||||+|++|.||||+|+..|... ..++..|++
T Consensus 4 ~ve~Il~~r~~~~--------------~~~~~y~VkW~g~~~~~~tWe~~~~l~~~-------~~~i~~~~~ 54 (55)
T cd00024 4 EVEKILDHRKKKD--------------GGEYEYLVKWKGYSYSEDTWEPEENLEDC-------KELIDEFKK 54 (55)
T ss_pred eEeeeeeeeecCC--------------CCcEEEEEEECCCCCccCccccHHHhCch-------HHHHHHHHh
Confidence 4678888875432 01248999999999999999999998643 246677764
No 188
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.46 E-value=5.5e-05 Score=83.26 Aligned_cols=47 Identities=36% Similarity=1.039 Sum_probs=40.0
Q ss_pred ccccccccccCCC--CCeeecC--CCCC-cccccccCCCCCCCCCCCCCCCccCC
Q 000500 48 DAKDDSCQACGES--ENLMSCD--TCTY-AYHAKCLVPPLKAPPSGSWRCPECVS 97 (1460)
Q Consensus 48 ~~~~~~C~~C~~~--g~ll~Cd--~C~~-~~H~~Cl~P~l~~~p~~~W~C~~C~~ 97 (1460)
..+..+|+ |++. |.|+-|| .|.+ .||+.|+ .|..+|.|.|+|++|..
T Consensus 218 e~e~lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CV--GLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 218 EGEELYCF-CQQVSYGQMVACDNANCKREWFHLECV--GLKEPPKGKWYCPECKK 269 (271)
T ss_pred cCceeEEE-ecccccccceecCCCCCchhheecccc--ccCCCCCCcEeCHHhHh
Confidence 45677888 6765 7899999 5996 4999999 99999999999999974
No 189
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.44 E-value=0.0045 Score=76.43 Aligned_cols=86 Identities=22% Similarity=0.220 Sum_probs=58.7
Q ss_pred CCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccCCCEEEEecCCC------Ch-------------
Q 000500 648 KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------NP------------- 708 (1460)
Q Consensus 648 g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VIi~DsdW------NP------------- 708 (1460)
.+-++-|..+.+.+....+ |...+.+..-++|+|..+...|.+.....|| ||.+ ||
T Consensus 506 eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~piS 580 (902)
T KOG0923|consen 506 ELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPIS 580 (902)
T ss_pred eEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCeEEEe--cCccccccCcCCCcCceeEEEeeec
Confidence 3446678888887766655 5554555556889999999998888776665 5533 33
Q ss_pred -hhHHHHHHhhcccCCCCceEEEEEecCCCHHHH
Q 000500 709 -HADLQAMARAHRLGQTNKVMIFRLITRGSIEER 741 (1460)
Q Consensus 709 -~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~ 741 (1460)
+.-.||-|||+|.| +-..|||+|.-+++..
T Consensus 581 KAsA~QRaGRAGRtg---PGKCfRLYt~~aY~~e 611 (902)
T KOG0923|consen 581 KASANQRAGRAGRTG---PGKCFRLYTAWAYEHE 611 (902)
T ss_pred hhhhhhhccccCCCC---CCceEEeechhhhhhh
Confidence 23357777777755 6678999997666543
No 190
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.44 E-value=0.00082 Score=75.02 Aligned_cols=66 Identities=23% Similarity=0.292 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHHHhhhcCCc-EEEEecCCCCcHHHHHHHHHHHH-------hCCCCcEEEEEcc-ccHHHHHHHHHH
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTH-VILADEMGLGKTIQSIAFLASLF-------GERISPHLVVAPL-STLRNWEREFAT 354 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~-~ILADemGLGKTiqaIa~l~~L~-------~~~~~p~LIVvP~-sll~qW~~E~~k 354 (1460)
+|.+.|.+++..+ ..... .++.-..|+|||.+..+++..+. ....+++||++|. ..+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~----~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSA----LSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHH----CTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHH----HcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 3778999998755 44555 88899999999988888887773 2344599999994 667777777666
No 191
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.32 E-value=9e-05 Score=85.87 Aligned_cols=45 Identities=31% Similarity=0.835 Sum_probs=38.3
Q ss_pred cccccc-cCCCCCeeecCC--CC-CcccccccCCCCCCCCCCCCCCCccCC
Q 000500 51 DDSCQA-CGESENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1460)
Q Consensus 51 ~~~C~~-C~~~g~ll~Cd~--C~-~~~H~~Cl~P~l~~~p~~~W~C~~C~~ 97 (1460)
..+|.+ |...|+|+-||. |+ ..||+.|+ .|...|.|.|+|+.|..
T Consensus 219 ~~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CV--GL~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 219 PTYCICNQVSYGKMIGCDNPGCPIEWFHFTCV--GLKTKPKGKWYCPRCKA 267 (274)
T ss_pred CEEEEecccccccccccCCCCCCcceEEEecc--ccccCCCCcccchhhhh
Confidence 345554 555789999997 99 99999999 99999999999999975
No 192
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.13 E-value=0.00021 Score=87.80 Aligned_cols=51 Identities=33% Similarity=0.879 Sum_probs=47.1
Q ss_pred ccccccccccccCCCCC---eeecCCCCCcccccccCCCCCCCCCCCCCCCccC
Q 000500 46 RIDAKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECV 96 (1460)
Q Consensus 46 ~~~~~~~~C~~C~~~g~---ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~ 96 (1460)
|.+..+.+|..|+.+|+ ++.|+.|+-+||-+|..|+...+|.+.|+|+.|.
T Consensus 63 WrC~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~ 116 (694)
T KOG4443|consen 63 WRCPSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCT 116 (694)
T ss_pred cccCCceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHH
Confidence 66788999999998776 8999999999999999999999999999999885
No 193
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.12 E-value=0.0003 Score=92.53 Aligned_cols=64 Identities=28% Similarity=0.724 Sum_probs=51.6
Q ss_pred cccccccccCCCC-----CeeecCCCCCcccccccCCCCCCCCCCCCCCCccCCCCCccccccccccccCccCC
Q 000500 49 AKDDSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGD 117 (1460)
Q Consensus 49 ~~~~~C~~C~~~g-----~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~diekiL~~R~~p~~~~~ 117 (1460)
..+.+|.+|.++. .+|+||.|..++|+.|.. ...+|+|.|.|..|.-..... +.|-++|...+.
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~~~---v~c~~cp~~~gA 285 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQRP---VRCLLCPSKGGA 285 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcCcc---cceEeccCCCCc
Confidence 4577899998764 389999999999999995 667899999999998766444 666677776654
No 194
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.08 E-value=0.00024 Score=83.82 Aligned_cols=72 Identities=31% Similarity=0.681 Sum_probs=57.6
Q ss_pred hhhhcccccccccccccCCCCC-----eeecCCCCCcccccccCCCCCCCCCCCCCCCccCCCCCccccccccccccCcc
Q 000500 41 FERIVRIDAKDDSCQACGESEN-----LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVA 115 (1460)
Q Consensus 41 ~~~~~~~~~~~~~C~~C~~~g~-----ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~diekiL~~R~~p~~~ 115 (1460)
.+.+..+|.-++.|.+|..... ++.||+|.-+.|..|. .+..+|+|.|+|..|.-.. ..|..|-++|...
T Consensus 183 vepi~~~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CY--GI~f~peG~WlCrkCi~~~---~~i~~C~fCps~d 257 (669)
T COG5141 183 VEPIEPSDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCY--GIQFLPEGFWLCRKCIYGE---YQIRCCSFCPSSD 257 (669)
T ss_pred ccccCCchhhhhhhHhccccccCCcceEEEecCcchhhhhhcc--cceecCcchhhhhhhcccc---cceeEEEeccCCC
Confidence 4445555667888999987543 9999999999999999 8889999999999998654 3466788888877
Q ss_pred CC
Q 000500 116 GD 117 (1460)
Q Consensus 116 ~~ 117 (1460)
+.
T Consensus 258 Ga 259 (669)
T COG5141 258 GA 259 (669)
T ss_pred Cc
Confidence 64
No 195
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.05 E-value=0.0061 Score=70.32 Aligned_cols=122 Identities=19% Similarity=0.128 Sum_probs=73.4
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccH----HHHHHHHHHHCCC
Q 000500 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL----RNWEREFATWAPQ 358 (1460)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll----~qW~~E~~kw~P~ 358 (1460)
|..+++-|+-|+--| ..|-|.-..+|=|||+++... +++..-...++=||+.+..| .+|...|-+++ +
T Consensus 75 g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l~-a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~L-G 146 (266)
T PF07517_consen 75 GLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAALP-AALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFL-G 146 (266)
T ss_dssp S----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHHH-HHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHT-T
T ss_pred CCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHHHH-HHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHh-h
Confidence 456778888886444 245599999999999987543 34444333477888887776 35888888888 7
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh---------hcccCCCcc
Q 000500 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---------SASLKPIKW 429 (1460)
Q Consensus 359 l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d---------~~~L~~i~w 429 (1460)
+.+-...+........ .....+|+-+|-..+.-| ......-.+
T Consensus 147 lsv~~~~~~~~~~~r~----------------------------~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~ 198 (266)
T PF07517_consen 147 LSVGIITSDMSSEERR----------------------------EAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGF 198 (266)
T ss_dssp --EEEEETTTEHHHHH----------------------------HHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSS
T ss_pred hccccCccccCHHHHH----------------------------HHHhCcccccccchhhHHHHHHHHhhccchhccCCC
Confidence 7777766654321110 123556777776666432 111123467
Q ss_pred eEEEecccccc
Q 000500 430 QCMIVDEGHRL 440 (1460)
Q Consensus 430 ~~VIvDEAHrl 440 (1460)
+++||||+..+
T Consensus 199 ~~~ivDEvDs~ 209 (266)
T PF07517_consen 199 DFAIVDEVDSI 209 (266)
T ss_dssp SEEEECTHHHH
T ss_pred CEEEEeccceE
Confidence 89999998765
No 196
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=96.99 E-value=0.00032 Score=86.55 Aligned_cols=90 Identities=26% Similarity=0.645 Sum_probs=60.4
Q ss_pred cccccccccCCC-----CCeeecCCCCCcccccccCCCCCCCCCCCCCCCccCCCCCccccccccccccCccCCCCcccc
Q 000500 49 AKDDSCQACGES-----ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKL 123 (1460)
Q Consensus 49 ~~~~~C~~C~~~-----g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~diekiL~~R~~p~~~~~~~~~~~ 123 (1460)
+++..|-+|..+ .+|++||.|.-..|+.|. .+..+|++.|.|..|.-... ...+ ++|..-+.-.....
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCy--GIle~p~gpWlCr~Calg~~--ppCv---LCPkkGGamK~~~s 341 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACY--GILEVPEGPWLCRTCALGIE--PPCV---LCPKKGGAMKPTKS 341 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhh--ceeecCCCCeeehhccccCC--CCee---eccccCCcccccCC
Confidence 356778898876 349999999999999999 89999999999999974311 1111 23433322111111
Q ss_pred cchhhhHHHhhhhccCCCcccc-cccchhhHHHhhh
Q 000500 124 GSKQIFVKQYLVKWKGLSYLHC-TWVPEKEFLKAFK 158 (1460)
Q Consensus 124 ~~k~~~~~EYlVKWkg~Sy~Hc-tWvpe~~L~~~~~ 158 (1460)
+. + |+|.-| -|+||..+.+.-+
T Consensus 342 gT----------~---wAHvsCALwIPEVsie~~ek 364 (893)
T KOG0954|consen 342 GT----------K---WAHVSCALWIPEVSIECPEK 364 (893)
T ss_pred CC----------e---eeEeeeeeccceeeccCHhh
Confidence 11 3 456666 8999998876533
No 197
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=96.98 E-value=0.00032 Score=89.79 Aligned_cols=47 Identities=36% Similarity=0.880 Sum_probs=44.9
Q ss_pred cccccccCCCCCeeecCCCCCcccccccCCCCCCCCCCCCCCCccCC
Q 000500 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1460)
Q Consensus 51 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~ 97 (1460)
++.|.+|++.|+++||.+|++.||..|..||+...|...|.|-.|..
T Consensus 344 ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~ 390 (1414)
T KOG1473|consen 344 DDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNI 390 (1414)
T ss_pred cccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhh
Confidence 67899999999999999999999999999999999999999999973
No 198
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=96.90 E-value=0.00017 Score=82.48 Aligned_cols=25 Identities=52% Similarity=0.929 Sum_probs=23.3
Q ss_pred HHhhhhccCCCcccccccchhhHHH
Q 000500 131 KQYLVKWKGLSYLHCTWVPEKEFLK 155 (1460)
Q Consensus 131 ~EYlVKWkg~Sy~HctWvpe~~L~~ 155 (1460)
.||||||+|||+.||||+|+++++.
T Consensus 26 vEYlVKWkGWs~kyNTWEPEENILD 50 (369)
T KOG2748|consen 26 VEYLVKWKGWSQKYNTWEPEENILD 50 (369)
T ss_pred eEEEEEecccccccCccCccccccC
Confidence 4999999999999999999999874
No 199
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=96.75 E-value=0.004 Score=78.16 Aligned_cols=66 Identities=23% Similarity=0.369 Sum_probs=49.7
Q ss_pred HHHHhccCCCCeeEEeeccccccccCccCCCEEE--------EecC---------CCC-hhhHHHHHHhhcccCCCCceE
Q 000500 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI--------IYDS---------DWN-PHADLQAMARAHRLGQTNKVM 728 (1460)
Q Consensus 667 Id~Fn~~~s~~~vfLlSTrAgg~GINL~~Ad~VI--------i~Ds---------dWN-P~~d~QAigRahRiGQ~k~V~ 728 (1460)
+.-|...+.+...++++|.++...|.++....|| +||+ +|- -+.-.||-|||+|+| +-+
T Consensus 620 ~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGH 696 (1172)
T KOG0926|consen 620 MRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGH 696 (1172)
T ss_pred hhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCc
Confidence 3447777777777899999999999999998887 3444 343 344568888888877 567
Q ss_pred EEEEecC
Q 000500 729 IFRLITR 735 (1460)
Q Consensus 729 VyrLvt~ 735 (1460)
.|||++.
T Consensus 697 cYRLYSS 703 (1172)
T KOG0926|consen 697 CYRLYSS 703 (1172)
T ss_pred eeehhhh
Confidence 8888764
No 200
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=96.74 E-value=0.00035 Score=95.48 Aligned_cols=52 Identities=33% Similarity=0.903 Sum_probs=45.9
Q ss_pred ccccccccccCCCCC---eeecCCCCCcccccccCCCCCCCCCCCCCCCccCCCC
Q 000500 48 DAKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1460)
Q Consensus 48 ~~~~~~C~~C~~~g~---ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~ 99 (1460)
......|.+|...+. ++.|+.|..+||+.|+.|.+...|.++|+||.|....
T Consensus 1105 s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred ccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 356778999987653 9999999999999999999999999999999998644
No 201
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.72 E-value=0.0074 Score=76.80 Aligned_cols=45 Identities=24% Similarity=0.215 Sum_probs=41.9
Q ss_pred eeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccC
Q 000500 678 FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG 722 (1460)
Q Consensus 678 ~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiG 722 (1460)
..||.|--|+-+|-+-+.+=+++=+-+.-|-..-.|-+||..|+-
T Consensus 484 lRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLa 528 (985)
T COG3587 484 LRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLA 528 (985)
T ss_pred ceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeee
Confidence 458999999999999999999999999999999999999999975
No 202
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=96.69 E-value=0.00058 Score=83.59 Aligned_cols=83 Identities=31% Similarity=0.730 Sum_probs=60.1
Q ss_pred ccccCCC----CC-eeecC--CCCCcccccccCCCCCCCCCCCCCCCccCCCCCccccccccccccCccCCCCcccccch
Q 000500 54 CQACGES----EN-LMSCD--TCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGSK 126 (1460)
Q Consensus 54 C~~C~~~----g~-ll~Cd--~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~diekiL~~R~~p~~~~~~~~~~~~~k 126 (1460)
|-||.+. ++ |+.|| .|.-+.|..|. .+..+|.|.|||..|..-..-. -+.|+++|...+.-+..+.
T Consensus 8 CCVCSDErGWaeNPLVYCDG~nCsVAVHQaCY--GIvqVPtGpWfCrKCesqeraa--rvrCeLCP~kdGALKkTDn--- 80 (900)
T KOG0956|consen 8 CCVCSDERGWAENPLVYCDGHNCSVAVHQACY--GIVQVPTGPWFCRKCESQERAA--RVRCELCPHKDGALKKTDN--- 80 (900)
T ss_pred eeeecCcCCCccCceeeecCCCceeeeehhcc--eeEecCCCchhhhhhhhhhhhc--cceeecccCcccceecccC---
Confidence 7788753 22 99999 59999999999 8999999999999998643222 2678888887764332222
Q ss_pred hhhHHHhhhhccCCCcccc-cccchhhHH
Q 000500 127 QIFVKQYLVKWKGLSYLHC-TWVPEKEFL 154 (1460)
Q Consensus 127 ~~~~~EYlVKWkg~Sy~Hc-tWvpe~~L~ 154 (1460)
-||+|.-| -++||..+-
T Consensus 81 -----------~GWAHVVCALYIPEVrFg 98 (900)
T KOG0956|consen 81 -----------GGWAHVVCALYIPEVRFG 98 (900)
T ss_pred -----------CCceEEEEEeeccceeec
Confidence 24677777 678877654
No 203
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=96.61 E-value=0.00089 Score=57.92 Aligned_cols=36 Identities=44% Similarity=0.956 Sum_probs=28.4
Q ss_pred HHhhhhccCCCcccccccchhhHHHhhhcChhHHHHHHhHhhh
Q 000500 131 KQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (1460)
Q Consensus 131 ~EYlVKWkg~Sy~HctWvpe~~L~~~~~~~~~~k~kl~~f~kk 173 (1460)
.+|||||+|+++.+|||+|...|... ...+.+|..+
T Consensus 18 ~~ylVkW~g~~~~~~tW~~~~~l~~~-------~~~v~~~~~~ 53 (55)
T smart00298 18 LEYLVKWKGYSYSEDTWEPEENLLNC-------SKKLDNYKKK 53 (55)
T ss_pred EEEEEEECCCCCccCceeeHHHHHHH-------HHHHHHHHHh
Confidence 48999999999999999999988631 2356667653
No 204
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.58 E-value=0.056 Score=65.09 Aligned_cols=62 Identities=29% Similarity=0.367 Sum_probs=47.2
Q ss_pred eEEeeccccccccCccCCCEEEEecCC------CCh-----------hhHHHHHHhhcccCCCCceEEEEEecCCCHHHH
Q 000500 679 CFLLSTRAGGLGINLATADTVIIYDSD------WNP-----------HADLQAMARAHRLGQTNKVMIFRLITRGSIEER 741 (1460)
Q Consensus 679 vfLlSTrAgg~GINL~~Ad~VIi~Dsd------WNP-----------~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~ 741 (1460)
.+++||..+...+.+.+.-.| .||. +|| ..-.||..|++|.|.+++-..|+|+|+..++..
T Consensus 315 kvVvstniaetsltidgiv~V--IDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~e 392 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTIDGIVFV--IDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKE 392 (699)
T ss_pred eEEEEecchheeeeeccEEEE--ecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhc
Confidence 478999999888877765444 4553 344 344699999999999999999999998766654
Q ss_pred H
Q 000500 742 M 742 (1460)
Q Consensus 742 I 742 (1460)
|
T Consensus 393 m 393 (699)
T KOG0925|consen 393 M 393 (699)
T ss_pred C
Confidence 4
No 205
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.42 E-value=0.01 Score=71.91 Aligned_cols=134 Identities=16% Similarity=0.221 Sum_probs=99.1
Q ss_pred hhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHh----cCC----eEEEEecCCCHHHHHHHHHHHhccCCC
Q 000500 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----KKW----QYERIDGKVGGAERQIRIDRFNAKNSS 676 (1460)
Q Consensus 605 ~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~----~g~----~~~ridGs~~~~eRq~~Id~Fn~~~s~ 676 (1460)
..+.|+....+++..+...|-|+|-||...++.+++-...+. -|- .+..+.|+-..++|.++-...- .+
T Consensus 506 ~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F---~G 582 (1034)
T KOG4150|consen 506 EKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLF---GG 582 (1034)
T ss_pred hhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhh---CC
Confidence 356788888899999999999999999988876655433221 111 1334678888888888765542 35
Q ss_pred CeeEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhcccCCCCceEEEEEecCCCHHHHHH
Q 000500 677 RFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMM 743 (1460)
Q Consensus 677 ~~vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ~k~V~VyrLvt~~TiEE~I~ 743 (1460)
+.+-+++|.|+.+||++-..|.|+.+..+.+-+++.|..|||+|-.... ..| +.+..+.||..-+
T Consensus 583 ~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~S-Lav-yva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 583 KLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPS-LAV-YVAFLGPVDQYYM 647 (1034)
T ss_pred eeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCc-eEE-EEEeccchhhHhh
Confidence 5668999999999999999999999999999999999999999964332 222 2344455666543
No 206
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.38 E-value=0.028 Score=62.47 Aligned_cols=149 Identities=22% Similarity=0.268 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCC-CCcEEEEEccccHHHHHHHHHHHCCCCeEEEE
Q 000500 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNVVMY 364 (1460)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~-~~p~LIVvP~sll~qW~~E~~kw~P~l~vvvy 364 (1460)
+-+.|...++-|. +..-.++.-..|+|||+.|++....+...+ ..+++|+-|..-... ++ -+.|
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~---~l-Gflp------- 69 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGE---DL-GFLP------- 69 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT--------SS--------
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcc---cc-ccCC-------
Confidence 4578999988773 667889999999999999999988777654 347777777553322 21 1122
Q ss_pred EcChhH------HHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEecccc
Q 000500 365 VGTSQA------RNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1460)
Q Consensus 365 ~G~~~~------r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEAH 438 (1460)
|+..+ +......+..+....... -...-.|-+.+...++- ..++..+||||||+
T Consensus 70 -G~~~eK~~p~~~p~~d~l~~~~~~~~~~~--------------~~~~~~Ie~~~~~~iRG-----rt~~~~~iIvDEaQ 129 (205)
T PF02562_consen 70 -GDLEEKMEPYLRPIYDALEELFGKEKLEE--------------LIQNGKIEIEPLAFIRG-----RTFDNAFIIVDEAQ 129 (205)
T ss_dssp ---------TTTHHHHHHHTTTS-TTCHHH--------------HHHTTSEEEEEGGGGTT-------B-SEEEEE-SGG
T ss_pred -CCHHHHHHHHHHHHHHHHHHHhChHhHHH--------------HhhcCeEEEEehhhhcC-----ccccceEEEEeccc
Confidence 11111 111111222111110000 00112244444333321 23455899999999
Q ss_pred ccCCcchHHHHHHHhccccceEeeccccccCCH
Q 000500 439 RLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNL 471 (1460)
Q Consensus 439 rlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl 471 (1460)
++.. ..+...+.++....++.++|-|.|.+.
T Consensus 130 N~t~--~~~k~ilTR~g~~skii~~GD~~Q~D~ 160 (205)
T PF02562_consen 130 NLTP--EELKMILTRIGEGSKIIITGDPSQIDL 160 (205)
T ss_dssp G--H--HHHHHHHTTB-TT-EEEEEE-------
T ss_pred CCCH--HHHHHHHcccCCCcEEEEecCceeecC
Confidence 7643 344455667777889999999977664
No 207
>PRK10536 hypothetical protein; Provisional
Probab=96.35 E-value=0.028 Score=64.37 Aligned_cols=151 Identities=16% Similarity=0.169 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHH-hCCCCcEEEEEccccHHHHHHHHHHHCCCCeEEEE
Q 000500 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GERISPHLVVAPLSTLRNWEREFATWAPQMNVVMY 364 (1460)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~-~~~~~p~LIVvP~sll~qW~~E~~kw~P~l~vvvy 364 (1460)
+...|...+.+| ..+..+++.-+.|+|||..++++..... ......++|+=|.-.. .|.-.|.|
T Consensus 60 ~n~~Q~~~l~al----~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~----ge~LGfLP------- 124 (262)
T PRK10536 60 RNEAQAHYLKAI----ESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA----DEDLGFLP------- 124 (262)
T ss_pred CCHHHHHHHHHH----hcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc----hhhhCcCC-------
Confidence 556888888877 3456888999999999999999988654 4333345554443322 23333444
Q ss_pred EcChhHHH------HHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEecccc
Q 000500 365 VGTSQARN------IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1460)
Q Consensus 365 ~G~~~~r~------~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEAH 438 (1460)
|+..++- +....+....... ... .. ....-.|-|.+...++. ..+.-++|||||||
T Consensus 125 -G~~~eK~~p~~~pi~D~L~~~~~~~~--~~~-----~~-----~~~~~~Iei~~l~ymRG-----rtl~~~~vIvDEaq 186 (262)
T PRK10536 125 -GDIAEKFAPYFRPVYDVLVRRLGASF--MQY-----CL-----RPEIGKVEIAPFAYMRG-----RTFENAVVILDEAQ 186 (262)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHhChHH--HHH-----HH-----HhccCcEEEecHHHhcC-----CcccCCEEEEechh
Confidence 2221111 1111111000000 000 00 00012255555554432 12334789999999
Q ss_pred ccCCcchHHHHHHHhccccceEeeccccccCCH
Q 000500 439 RLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNL 471 (1460)
Q Consensus 439 rlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl 471 (1460)
++.- ......+..+....+++++|-|-|.++
T Consensus 187 n~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 187 NVTA--AQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred cCCH--HHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 8754 455556677888899999999977663
No 208
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=96.13 E-value=0.0018 Score=78.32 Aligned_cols=50 Identities=28% Similarity=0.711 Sum_probs=40.5
Q ss_pred cccccCCCC-----CeeecCCCCCcccccccCCCCCC----CCCCCCCCCccCCCCCcc
Q 000500 53 SCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKA----PPSGSWRCPECVSPLNDI 102 (1460)
Q Consensus 53 ~C~~C~~~g-----~ll~Cd~C~~~~H~~Cl~P~l~~----~p~~~W~C~~C~~~~~di 102 (1460)
.|.+|+.++ .||.|+.|...||..|+.|+.+. -+...|+|..|......+
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~ 228 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKV 228 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhc
Confidence 388887654 39999999999999999998764 356779999998766444
No 209
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=96.07 E-value=0.0058 Score=71.04 Aligned_cols=58 Identities=31% Similarity=0.388 Sum_probs=49.5
Q ss_pred CCccchhhhhhhccCCCCceEEEEEecccccccccccccccccchHHHHHHHHhhhcc
Q 000500 189 PEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQSRS 246 (1460)
Q Consensus 189 pe~~~veRII~~r~~~~~~eyLVKWkgL~Y~~~TWE~~~~~~~~~~~i~~f~~~~~~~ 246 (1460)
++...|++|+++|...+..+|||||+|-|=.+.|||.+.+...+...|+.|..-....
T Consensus 46 ~~~~vvEki~~~r~~~g~~eYlvkW~Gy~~~~ntWEPee~~~~C~~li~~~~~~~~~~ 103 (270)
T KOG1911|consen 46 EEEYVVEKILKRRKKNGKIEYLVKWKGYPDPDNTWEPEEHNLDCPELIDEFEKSQKKL 103 (270)
T ss_pred cchhhhhhhhhccccCCCceeeeecCCCCCccccCCchhhccccHHHHHHHHHHhccc
Confidence 3445899999999888889999999999999999999886677889999999854443
No 210
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.97 E-value=0.0034 Score=84.42 Aligned_cols=179 Identities=26% Similarity=0.401 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEecCCCC--cHHHHHHHHHHHHhCC-CCcEEEEEccccHHHHHHHHHHHCCCCeE
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLG--KTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNV 361 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLG--KTiqaIa~l~~L~~~~-~~p~LIVvP~sll~qW~~E~~kw~P~l~v 361 (1460)
.+.++|.....-... .......++++.|+| ||+.+..+........ ....++++|..+..+|..+...++ ....
T Consensus 84 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~ 160 (866)
T COG0553 84 ILIPHQLDIALEVLN--ELALRVLIADEVGLGDLKTIEAGAILKELLLRGEIKRVLILVPKTLRAQWVVELLEKF-NIRL 160 (866)
T ss_pred ccCcchhhhhhhhhh--hhhhchhhcccccccccccccccccchHhhhhhhhccceeccchHHHHHHHHHhhhhc-cccc
Confidence 455666665432211 122238899999999 8998877766655443 348999999999999999987653 1111
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----hcccCCCcc---eEEEe
Q 000500 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKW---QCMIV 434 (1460)
Q Consensus 362 vvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d----~~~L~~i~w---~~VIv 434 (1460)
.+..-.. .+........+. .......++.+.+..... ...+....| +++++
T Consensus 161 ~~~~~~~-~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (866)
T COG0553 161 AVLDKEG-LRYLLKQYDAYN---------------------PFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVI 218 (866)
T ss_pred hhhhhhh-hhhhhhhhcccc---------------------cccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhc
Confidence 1111000 000000000000 000001034444444332 223344456 89999
Q ss_pred ccccccCCcc---------hHHHHHHHhcccc--------ceEeeccccccCCHHHHHHHHHhhcCCCCCC
Q 000500 435 DEGHRLKNKD---------SKLFSSLKQYSTR--------HRVLLTGTPLQNNLDELFMLMHFLDAGKFGS 488 (1460)
Q Consensus 435 DEAHrlKN~~---------Sk~~~al~~l~~~--------~rLLLTGTPlqNnl~EL~sLL~fL~p~~f~~ 488 (1460)
||+|.+.+.. ...+..+...... ...++++||......+++....++.+..+.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 219 DEAHNLGSSEGTRKLAPLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred chHhhcccccccccccchhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 9999987742 2333333333211 2347899999999888888778887777665
No 211
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.95 E-value=0.0075 Score=61.45 Aligned_cols=35 Identities=26% Similarity=0.528 Sum_probs=26.8
Q ss_pred eEEEeccccccCCcchHHHHHHHhc--cccceEeecccc
Q 000500 430 QCMIVDEGHRLKNKDSKLFSSLKQY--STRHRVLLTGTP 466 (1460)
Q Consensus 430 ~~VIvDEAHrlKN~~Sk~~~al~~l--~~~~rLLLTGTP 466 (1460)
.+|||||+|++. .......++.+ .....++|+|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999984 25556666555 456679999999
No 212
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.93 E-value=0.015 Score=70.31 Aligned_cols=67 Identities=18% Similarity=0.189 Sum_probs=51.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCC-C-cEEEEEcc
Q 000500 276 HSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI-S-PHLVVAPL 342 (1460)
Q Consensus 276 ~~P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~-~-p~LIVvP~ 342 (1460)
..|.+++-...+|-|.+-..-+...+..+++|+|-+..|+|||+.-++++....-..+ . .-||-|..
T Consensus 7 ~l~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSR 75 (755)
T KOG1131|consen 7 DLLVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSR 75 (755)
T ss_pred CeeEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecC
Confidence 3455566567899999988888888999999999999999999999888766543332 2 45666663
No 213
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=95.73 E-value=0.017 Score=62.20 Aligned_cols=81 Identities=17% Similarity=0.184 Sum_probs=54.5
Q ss_pred HHcCceEEEEecchhhHHHHHHHHHhcCC--eEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeecc--ccccccCccC-
Q 000500 621 KEQGHRVLIYSQFQHMLDLLEDYLTFKKW--QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR--AGGLGINLAT- 695 (1460)
Q Consensus 621 ~~~g~KVLIFSq~~~~LdiLed~L~~~g~--~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTr--Agg~GINL~~- 695 (1460)
...+.++|||...-..++.+.+++...+. .+..+.- +...+..+++.|..... .+|+++. ...+|||++.
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~---~il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEG---AILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSS---EEEEEETTSCCGSSS--ECE
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccC---eEEEEEecccEEEeecCCCc
Confidence 34567999999999999999999876532 1122221 24578899999987433 3677776 8999999984
Q ss_pred -CCEEEEecCCC
Q 000500 696 -ADTVIIYDSDW 706 (1460)
Q Consensus 696 -Ad~VIi~DsdW 706 (1460)
+..||+.-.|+
T Consensus 81 ~~r~vii~glPf 92 (167)
T PF13307_consen 81 LLRAVIIVGLPF 92 (167)
T ss_dssp SEEEEEEES---
T ss_pred hhheeeecCCCC
Confidence 88999988886
No 214
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.67 E-value=0.052 Score=70.49 Aligned_cols=125 Identities=11% Similarity=0.035 Sum_probs=85.0
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhcc
Q 000500 313 MGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKK 391 (1460)
Q Consensus 313 mGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~~~~~~ 391 (1460)
.|+|||-..+.++......+. ..||++|. ++..|+...|...++...+++||+.-...+..+.+.-.
T Consensus 169 ~GSGKTevyl~~i~~~l~~Gk-~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~----------- 236 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAGR-GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAV----------- 236 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcCC-eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHH-----------
Confidence 399999999999988887654 69999995 88899999999999767899999876665544443211
Q ss_pred ccCccccccccccccccEEEecHHHHHhhhcccCCC-cceEEEecccccc--CCcchHH-----HHHHHh-ccccceEee
Q 000500 392 KSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI-KWQCMIVDEGHRL--KNKDSKL-----FSSLKQ-YSTRHRVLL 462 (1460)
Q Consensus 392 ~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i-~w~~VIvDEAHrl--KN~~Sk~-----~~al~~-l~~~~rLLL 462 (1460)
..+...|||-|...+ |-.+ +..+|||||=|.- |...+.. ...++. ...-..+|-
T Consensus 237 -----------~~G~~~IViGtRSAv------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLg 299 (665)
T PRK14873 237 -----------LRGQARVVVGTRSAV------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIG 299 (665)
T ss_pred -----------hCCCCcEEEEcceeE------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 124556888887654 2222 4579999999864 3332211 111111 223456777
Q ss_pred cccc
Q 000500 463 TGTP 466 (1460)
Q Consensus 463 TGTP 466 (1460)
|+||
T Consensus 300 SaTP 303 (665)
T PRK14873 300 GHAR 303 (665)
T ss_pred CCCC
Confidence 9999
No 215
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.60 E-value=0.018 Score=71.37 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEE
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P~l~vv 362 (1460)
.+|---|..||.-. -++.=.||.-..|+|||+++.+++++|...+.+|+||++|. ..+.|-..-|.+- +++|+
T Consensus 409 pkLN~SQ~~AV~~V----L~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~t--gLKVv 482 (935)
T KOG1802|consen 409 PKLNASQSNAVKHV----LQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKT--GLKVV 482 (935)
T ss_pred hhhchHHHHHHHHH----HcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhc--CceEe
Confidence 46888999999876 45666899999999999999999999998888899999996 5567777777763 58887
Q ss_pred EEEc
Q 000500 363 MYVG 366 (1460)
Q Consensus 363 vy~G 366 (1460)
-+..
T Consensus 483 Rl~a 486 (935)
T KOG1802|consen 483 RLCA 486 (935)
T ss_pred eeeh
Confidence 6654
No 216
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.38 E-value=0.048 Score=65.95 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=32.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhC-CCCcEEEEEccccHHHHHHH
Q 000500 307 VILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTLRNWERE 351 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~-~~~p~LIVvP~sll~qW~~E 351 (1460)
.|+--..|+|||+.++.++..+... .....+++|++..+.+..++
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~ 49 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLRE 49 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHH
Confidence 4677789999999999999998222 22367888887776665443
No 217
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=95.11 E-value=0.017 Score=66.70 Aligned_cols=50 Identities=32% Similarity=0.357 Sum_probs=42.6
Q ss_pred cchhhhhhhccCCCCceEEEEEecccccccccccccccccchHHHHHHHHh
Q 000500 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (1460)
Q Consensus 192 ~~veRII~~r~~~~~~eyLVKWkgL~Y~~~TWE~~~~~~~~~~~i~~f~~~ 242 (1460)
..+|-||-+|..-|..+|||||+|-.--..|||.+..|.. ..+|..|...
T Consensus 11 fAaEsIlkkRirKGrvEYlVKWkGWs~kyNTWEPEENILD-pRLi~AFe~r 60 (369)
T KOG2748|consen 11 FAAESILKKRIRKGRVEYLVKWKGWSQKYNTWEPEENILD-PRLIAAFEQR 60 (369)
T ss_pred HHHHHHHHHHhhccceEEEEEecccccccCccCccccccC-HHHHHHHHhh
Confidence 3688999999888999999999999999999999988864 5677777764
No 218
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.01 E-value=0.19 Score=55.72 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccH
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll 345 (1460)
+|.+-|.+++..+.. ...+-.+|.-..|+|||.....+...+...+ .++++++|....
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-~~v~~~apT~~A 58 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEALEAAG-KRVIGLAPTNKA 58 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEEESSHHH
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEECCcHHH
Confidence 477899999987732 2334577888999999987666665555543 589999997544
No 219
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=94.44 E-value=0.16 Score=66.17 Aligned_cols=76 Identities=22% Similarity=0.269 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHHHHHHCCCCeEE
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E~~kw~P~l~vv 362 (1460)
..|-+.|..+|.... ......++.-..|+|||.+++.++..+...+. ++||++|. ..+.+....+... +.+++
T Consensus 156 ~~ln~~Q~~Av~~~l---~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~-~VLv~a~sn~Avd~l~e~l~~~--~~~vv 229 (637)
T TIGR00376 156 PNLNESQKEAVSFAL---SSKDLFLIHGPPGTGKTRTLVELIRQLVKRGL-RVLVTAPSNIAVDNLLERLALC--DQKIV 229 (637)
T ss_pred CCCCHHHHHHHHHHh---cCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC-CEEEEcCcHHHHHHHHHHHHhC--CCcEE
Confidence 468999999997752 34467888999999999999998888776543 89999996 4566776666553 44554
Q ss_pred EEE
Q 000500 363 MYV 365 (1460)
Q Consensus 363 vy~ 365 (1460)
-+.
T Consensus 230 Rlg 232 (637)
T TIGR00376 230 RLG 232 (637)
T ss_pred EeC
Confidence 443
No 220
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.77 E-value=0.45 Score=48.17 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=27.5
Q ss_pred CCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccH
Q 000500 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1460)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll 345 (1460)
+...+|.-+.|.|||..+-.++..+... ..+++++......
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~~~ 59 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDLL 59 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhhhh
Confidence 6678899999999998777777666422 2355555444333
No 221
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=93.64 E-value=0.42 Score=63.21 Aligned_cols=65 Identities=23% Similarity=0.123 Sum_probs=49.2
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCC-CcEEEEEccccHHHHHHH
Q 000500 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI-SPHLVVAPLSTLRNWERE 351 (1460)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~-~p~LIVvP~sll~qW~~E 351 (1460)
+..|.+-|.+++..+ ..++-.+|.-..|+|||.++-+++..+...+. .++++++|...-.....+
T Consensus 321 ~~~l~~~Q~~Ai~~~----~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 321 RKGLSEEQKQALDTA----IQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCCCHHHHHHHHHH----HhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHH
Confidence 457999999999876 35567899999999999888777776655432 478889997666554444
No 222
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=93.55 E-value=0.015 Score=46.27 Aligned_cols=33 Identities=36% Similarity=0.968 Sum_probs=19.0
Q ss_pred CeeecCCCCCcccccccCCCCCCCCCC-CCCCCccC
Q 000500 62 NLMSCDTCTYAYHAKCLVPPLKAPPSG-SWRCPECV 96 (1460)
Q Consensus 62 ~ll~Cd~C~~~~H~~Cl~P~l~~~p~~-~W~C~~C~ 96 (1460)
.|+.|+.|.-.+|..|. .+...|.+ .|+|..|.
T Consensus 3 ~ll~C~~C~v~VH~~CY--Gv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCY--GVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp EEEE-SSS--EEEHHHH--T-SS--SS-----HHH-
T ss_pred ceEEeCCCCCcCChhhC--CcccCCCCCcEECCcCC
Confidence 48999999999999999 66666666 79998884
No 223
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=93.44 E-value=0.17 Score=56.95 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=62.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHHC
Q 000500 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (1460)
Q Consensus 282 ~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~kw~ 356 (1460)
.+..+||-|.+.+..|+.. ..+.|.++-.-||-|||-..+-++..+...+..=+-+|||++++.+-..-+..-+
T Consensus 20 ~~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALLEQMRQMLRSRL 93 (229)
T ss_pred cCceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHHHH
Confidence 3567999999999888654 5678999999999999999998888888887777889999999998777775543
No 224
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.43 E-value=0.55 Score=60.94 Aligned_cols=86 Identities=19% Similarity=0.216 Sum_probs=60.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHH----HHHHHHHHhC---------C------------
Q 000500 278 PEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS----IAFLASLFGE---------R------------ 332 (1460)
Q Consensus 278 P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqa----Ia~l~~L~~~---------~------------ 332 (1460)
|..++ .+++|-|+.-+..++..+....+|+|-+.+|+|||+.- +++..++... .
T Consensus 15 ~V~fP-~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~ 93 (945)
T KOG1132|consen 15 PVEFP-FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSG 93 (945)
T ss_pred eeecc-CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCC
Confidence 33444 56799999999999999999999999999999999864 4444444300 0
Q ss_pred ---------C-----C-cEEEEEcc--ccHHHHHHHHHHHCCCCeEEEE
Q 000500 333 ---------I-----S-PHLVVAPL--STLRNWEREFATWAPQMNVVMY 364 (1460)
Q Consensus 333 ---------~-----~-p~LIVvP~--sll~qW~~E~~kw~P~l~vvvy 364 (1460)
. + |.++.+.. +-|.|-.+|+.+..=.++.+++
T Consensus 94 g~~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVL 142 (945)
T KOG1132|consen 94 GEKSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVL 142 (945)
T ss_pred CCchhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEe
Confidence 0 1 56777774 4588999999886533444443
No 225
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=93.37 E-value=0.11 Score=64.76 Aligned_cols=64 Identities=22% Similarity=0.315 Sum_probs=49.9
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHH
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWERE 351 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E 351 (1460)
..|-+-|..++.+.. .+..-.++--..|+|||.+..-++..+...+ ..+||.+|. -.+.|-..-
T Consensus 184 ~~ln~SQk~Av~~~~---~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~-k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAI---NNKDLLIIHGPPGTGKTRTLVEIISQLVKQK-KRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred ccccHHHHHHHHHHh---ccCCceEeeCCCCCCceeeHHHHHHHHHHcC-CeEEEEcCchHHHHHHHHH
Confidence 457789999998873 3335678888999999999988888877665 589999996 556776654
No 226
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=93.30 E-value=1.4 Score=57.97 Aligned_cols=162 Identities=15% Similarity=0.164 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEc-cccHHHHHHHHHHHCCCCeEEE
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQMNVVM 363 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP-~sll~qW~~E~~kw~P~l~vvv 363 (1460)
.|-.-|+.|+-.. .....-.++---.|+|||.+...++..|...+. .+|+.+= .+.+.|-.--+..+. +. ++
T Consensus 669 ~LN~dQr~A~~k~---L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gk-kVLLtsyThsAVDNILiKL~~~~--i~-~l 741 (1100)
T KOG1805|consen 669 RLNNDQRQALLKA---LAAEDYALILGMPGTGKTTTISLLIKILVALGK-KVLLTSYTHSAVDNILIKLKGFG--IY-IL 741 (1100)
T ss_pred hcCHHHHHHHHHH---HhccchheeecCCCCCchhhHHHHHHHHHHcCC-eEEEEehhhHHHHHHHHHHhccC--cc-ee
Confidence 5888999997543 233334455556899999988888888877764 5555554 677888766666543 22 22
Q ss_pred EEcChhH-HHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEeccccccCC
Q 000500 364 YVGTSQA-RNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (1460)
Q Consensus 364 y~G~~~~-r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrlKN 442 (1460)
-.|.... -..++++... .....+ .+..-........||.+|--.+. ...|....||++|||||--+--
T Consensus 742 RLG~~~kih~~v~e~~~~-~~~s~k--------s~~~l~~~~~~~~IVa~TClgi~--~plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 742 RLGSEEKIHPDVEEFTLT-NETSEK--------SYADLKKFLDQTSIVACTCLGIN--HPLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred ecCCccccchHHHHHhcc-cccchh--------hHHHHHHHhCCCcEEEEEccCCC--chhhhccccCEEEEcccccccc
Confidence 2344332 2234443320 000000 00000011123345655543332 3445566799999999976532
Q ss_pred cchHHHHHHHhccccceEeeccccccC
Q 000500 443 KDSKLFSSLKQYSTRHRVLLTGTPLQN 469 (1460)
Q Consensus 443 ~~Sk~~~al~~l~~~~rLLLTGTPlqN 469 (1460)
+ -.|--+....+..|-|-+.|-
T Consensus 811 P-----~~LgPL~~s~kFVLVGDh~QL 832 (1100)
T KOG1805|consen 811 P-----LCLGPLSFSNKFVLVGDHYQL 832 (1100)
T ss_pred c-----hhhhhhhhcceEEEecccccC
Confidence 2 233444556677788876543
No 227
>PLN03025 replication factor C subunit; Provisional
Probab=93.22 E-value=0.76 Score=54.89 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhhcC--CcEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 291 LEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 291 legvnwL~~~~~~~--~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
.+.+.+|......+ .+.+|.-+.|+|||..+.+++..+...
T Consensus 19 ~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~ 61 (319)
T PLN03025 19 EDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 61 (319)
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 33444444333332 467999999999999999998887643
No 228
>PRK04296 thymidine kinase; Provisional
Probab=92.72 E-value=0.37 Score=53.16 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=25.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEc
Q 000500 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP 341 (1460)
.++.-+||.|||..++.++..+...+ .+++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g-~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERG-MKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcC-CeEEEEec
Confidence 46788999999999999888775543 36666644
No 229
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=92.50 E-value=3.8 Score=53.66 Aligned_cols=42 Identities=26% Similarity=0.273 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhhcCC--c-EEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
|...+..|...+..++ + .||.-.-|+|||..+..|...|...
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4444555544445433 3 4889999999999999999888643
No 230
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=92.32 E-value=0.12 Score=43.82 Aligned_cols=28 Identities=43% Similarity=0.687 Sum_probs=24.0
Q ss_pred CccChHHHHHHHHHHHHhccchhHHhhh
Q 000500 1082 KFWKEEHDSLLLRAVLKHGYGRWQAIVD 1109 (1460)
Q Consensus 1082 ~~w~~eeD~~LL~gi~k~GyG~We~Ik~ 1109 (1460)
..||++||..|+.+|.+||-++|..|-.
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~ 29 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAK 29 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 3699999999999999999999987754
No 231
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.14 E-value=0.35 Score=60.01 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=32.0
Q ss_pred EecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHH
Q 000500 310 ADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRN 347 (1460)
Q Consensus 310 ADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~q 347 (1460)
-+.+|+|||+++.++|.+++..+.+.||..|-. +++..
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilek 41 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEK 41 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHH
Confidence 467999999999999999999998899998884 44443
No 232
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=91.98 E-value=0.55 Score=54.37 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 305 THVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
.+.+|.-+.|+|||..|-++...+...
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~ 69 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEM 69 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 457899999999999998887776543
No 233
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=91.87 E-value=0.64 Score=59.90 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCC----CcEEEEEccccH
Q 000500 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI----SPHLVVAPLSTL 345 (1460)
Q Consensus 288 pyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~----~p~LIVvP~sll 345 (1460)
+.|..++... ..+.-.+|.-..|+|||.++..++..+..... ..+++++|..--
T Consensus 148 ~~Qk~A~~~a----l~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkA 205 (586)
T TIGR01447 148 NWQKVAVALA----LKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKA 205 (586)
T ss_pred HHHHHHHHHH----hhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHH
Confidence 7999998765 34677899999999999998888877754321 368999996433
No 234
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=91.65 E-value=0.45 Score=63.42 Aligned_cols=111 Identities=23% Similarity=0.343 Sum_probs=76.6
Q ss_pred hhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccH-----HHHHHHHHHHCCCCeEEEEEcChhHHHHH
Q 000500 300 SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-----RNWEREFATWAPQMNVVMYVGTSQARNII 374 (1460)
Q Consensus 300 ~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll-----~qW~~E~~kw~P~l~vvvy~G~~~~r~~i 374 (1460)
.+..+.+++++...|+|||++|--. .+.....+...-++|...+ ..|.+-|... .++.++...|...-.-.+
T Consensus 1155 ~y~~nd~v~vga~~gsgkt~~ae~a--~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~lkl 1231 (1674)
T KOG0951|consen 1155 LYNTNDNVLVGAPNGSGKTACAELA--LLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDLKL 1231 (1674)
T ss_pred eecccceEEEecCCCCchhHHHHHH--hcCCccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccchHH
Confidence 3467788999999999999876332 2334555688999998665 4588888876 477777776654321111
Q ss_pred HHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEeccccccCCcch
Q 000500 375 REYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDS 445 (1460)
Q Consensus 375 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrlKN~~S 445 (1460)
..+-+|+|.|++....-. ... .-++.|+||.|-+.+...
T Consensus 1232 -----------------------------~~~~~vii~tpe~~d~lq-~iQ--~v~l~i~d~lh~igg~~g 1270 (1674)
T KOG0951|consen 1232 -----------------------------LQKGQVIISTPEQWDLLQ-SIQ--QVDLFIVDELHLIGGVYG 1270 (1674)
T ss_pred -----------------------------hhhcceEEechhHHHHHh-hhh--hcceEeeehhhhhcccCC
Confidence 235579999999875542 222 357899999999976543
No 235
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=91.44 E-value=0.77 Score=54.81 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=29.6
Q ss_pred HHHHHHHhhhcCC--cEEEEecCCCCcHHHHHHHHHHHHhCC
Q 000500 293 GLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGER 332 (1460)
Q Consensus 293 gvnwL~~~~~~~~--~~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1460)
.+.+|......+. +.+|.-+.|+|||..+.+++..+....
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~ 64 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP 64 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 3444444445555 789999999999999999998886543
No 236
>PRK06526 transposase; Provisional
Probab=91.44 E-value=0.84 Score=52.77 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHH
Q 000500 292 EGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (1460)
Q Consensus 292 egvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~ 353 (1460)
.+..|+ ..+.+.+|.-..|+|||..+.++...+...+. +++++ +...|..++.
T Consensus 90 ~~~~fi----~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~-~v~f~----t~~~l~~~l~ 142 (254)
T PRK06526 90 GTLDFV----TGKENVVFLGPPGTGKTHLAIGLGIRACQAGH-RVLFA----TAAQWVARLA 142 (254)
T ss_pred hcCchh----hcCceEEEEeCCCCchHHHHHHHHHHHHHCCC-chhhh----hHHHHHHHHH
Confidence 344666 56788999999999999999999888776543 33332 3345666654
No 237
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=91.25 E-value=0.086 Score=67.67 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=59.8
Q ss_pred ccccccccCCCCCeeecCCCCCcccccccCCCCCCCCCCCCCCCccCCCCCccccccccccccCccCCCCcccccchhhh
Q 000500 50 KDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGSKQIF 129 (1460)
Q Consensus 50 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~diekiL~~R~~p~~~~~~~~~~~~~k~~~ 129 (1460)
...-|.+|..++.+.+|+.|++.||.+|+.|+...++..-|.|..|..
T Consensus 176 ~~~~~~~~~~~~k~~~~a~~~~r~~~~~iKpe~~~i~rii~~~~s~~~-------------------------------- 223 (696)
T KOG0383|consen 176 PEAEIGVTRDKGKLVPYADLEERFLLYGIKPEWMPIARIINRRSSQKG-------------------------------- 223 (696)
T ss_pred ccccccccccCccccccccchhhhhheeccccccccchhhhhhccccc--------------------------------
Confidence 345588899999999999999999999999988777777787766642
Q ss_pred HHHhhhhccCCCcccccccchhh
Q 000500 130 VKQYLVKWKGLSYLHCTWVPEKE 152 (1460)
Q Consensus 130 ~~EYlVKWkg~Sy~HctWvpe~~ 152 (1460)
...|+|||+..+|..++|..+..
T Consensus 224 ~~~~~Vk~k~l~~d~~~~e~~~~ 246 (696)
T KOG0383|consen 224 ATDYLVKWKELSYDEQEWEVEDP 246 (696)
T ss_pred ceeeEeeeccCCccccCCCcCCC
Confidence 12799999999999999999874
No 238
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.93 E-value=0.85 Score=55.23 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhhcCC---cEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
|.+++..|...+..++ ..++.-+.|+|||..+..++..+...
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 4556677777777766 47889999999999999999988764
No 239
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=90.84 E-value=14 Score=47.53 Aligned_cols=81 Identities=12% Similarity=0.122 Sum_probs=48.2
Q ss_pred eEEEEecchhhHHHHHHHHHhcCCeEEEEecCCC-----HHHHHHHHHHHhcc---CCCCeeEEeeccccccccCccC--
Q 000500 626 RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVG-----GAERQIRIDRFNAK---NSSRFCFLLSTRAGGLGINLAT-- 695 (1460)
Q Consensus 626 KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~-----~~eRq~~Id~Fn~~---~s~~~vfLlSTrAgg~GINL~~-- 695 (1460)
=|++|-..-..|..+..++...|+- .+|.|.-+ ..--.++++.|... +.+.+.|-+--.-.++|||+.+
T Consensus 631 GvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~L 709 (821)
T KOG1133|consen 631 GVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDL 709 (821)
T ss_pred cEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEEEEEecccccccccccccc
Confidence 4788877777788888877765541 12222110 00024566677422 2233334444555689999985
Q ss_pred CCEEEEecCCCC
Q 000500 696 ADTVIIYDSDWN 707 (1460)
Q Consensus 696 Ad~VIi~DsdWN 707 (1460)
+..||+...|+-
T Consensus 710 gRaVvvVGlPyP 721 (821)
T KOG1133|consen 710 GRAVVVVGLPYP 721 (821)
T ss_pred ccEEEEeecCCC
Confidence 788998888775
No 240
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=90.75 E-value=0.59 Score=60.45 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCC---CCcEEEEEccccH
Q 000500 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTL 345 (1460)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~---~~p~LIVvP~sll 345 (1460)
..++|..++.-. ..+.-.||.-..|+|||.++..++..+.... ..++++++|..--
T Consensus 153 ~~d~Qk~Av~~a----~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkA 211 (615)
T PRK10875 153 EVDWQKVAAAVA----LTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKA 211 (615)
T ss_pred CCHHHHHHHHHH----hcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHH
Confidence 458999998754 4567789999999999999888888775532 2267888886544
No 241
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=90.71 E-value=0.26 Score=40.82 Aligned_cols=29 Identities=38% Similarity=0.714 Sum_probs=25.9
Q ss_pred CccChHHHHHHHHHHHHhccchhHHhhhC
Q 000500 1082 KFWKEEHDSLLLRAVLKHGYGRWQAIVDD 1110 (1460)
Q Consensus 1082 ~~w~~eeD~~LL~gi~k~GyG~We~Ik~D 1110 (1460)
..|+.+||..|+.++.+||.++|..|...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~ 30 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKE 30 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 57999999999999999999999887554
No 242
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=90.55 E-value=1.3 Score=46.50 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=36.5
Q ss_pred EEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccccccccCccC--CCEEEEecCCC
Q 000500 652 ERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT--ADTVIIYDSDW 706 (1460)
Q Consensus 652 ~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAgg~GINL~~--Ad~VIi~DsdW 706 (1460)
+.+-| ....+...+++.|.....+ .+|+++....+|||++. +..||+.-.|+
T Consensus 26 i~~e~-~~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 26 LLVQG-EDGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEEeC-CChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 33434 3344578899999864432 46777777999999985 68898887654
No 243
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.55 E-value=1 Score=56.35 Aligned_cols=42 Identities=21% Similarity=0.144 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhhcCC---cEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
|...+..|......++ ..|+.-+.|.|||..|..++..+...
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4444444544444443 25899999999999999998887654
No 244
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=90.46 E-value=0.091 Score=65.51 Aligned_cols=59 Identities=36% Similarity=0.791 Sum_probs=43.0
Q ss_pred ccccccccCCCCC-----eeecCCCCCcccccccCCCCCCC-CCCCCCCCccCC-----CCCcccccccc
Q 000500 50 KDDSCQACGESEN-----LMSCDTCTYAYHAKCLVPPLKAP-PSGSWRCPECVS-----PLNDIDKILDC 108 (1460)
Q Consensus 50 ~~~~C~~C~~~g~-----ll~Cd~C~~~~H~~Cl~P~l~~~-p~~~W~C~~C~~-----~~~diekiL~~ 108 (1460)
.+.+|.+|+..|. |+.|..|...||.+|+.--+... -.+.|.||.|+- ..+++-+.+.|
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD~~kf~~C 86 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGDPKKFLLC 86 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCCccccccc
Confidence 4677999987654 99999999999999996544332 234599999972 23456666666
No 245
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=90.42 E-value=0.25 Score=40.18 Aligned_cols=29 Identities=45% Similarity=0.759 Sum_probs=25.7
Q ss_pred ccChHHHHHHHHHHHHhccchhHHhhhCc
Q 000500 1083 FWKEEHDSLLLRAVLKHGYGRWQAIVDDK 1111 (1460)
Q Consensus 1083 ~w~~eeD~~LL~gi~k~GyG~We~Ik~D~ 1111 (1460)
.||.+||..|+.++.+||.++|..|...-
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~ 29 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKEL 29 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHc
Confidence 49999999999999999999998876553
No 246
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=89.93 E-value=0.75 Score=45.98 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=31.4
Q ss_pred CCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHH
Q 000500 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1460)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW 348 (1460)
+...+|.-.+|+|||..+..++..+.... ..++++.+......+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccC
Confidence 45678999999999999888887765543 356666665544443
No 247
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=89.85 E-value=12 Score=50.33 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=21.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
.||.-..|.|||..+..|+..|...
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 5799999999999999999888653
No 248
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.79 E-value=2.5 Score=51.88 Aligned_cols=56 Identities=11% Similarity=0.169 Sum_probs=36.3
Q ss_pred cceEEEeccccccCCcch---HHHHHHHhccc--cceEeeccccccCCHHHHHHHHHhhcC
Q 000500 428 KWQCMIVDEGHRLKNKDS---KLFSSLKQYST--RHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1460)
Q Consensus 428 ~w~~VIvDEAHrlKN~~S---k~~~al~~l~~--~~rLLLTGTPlqNnl~EL~sLL~fL~p 483 (1460)
..++||||++.+.....- .+...+..... ...|.|+||--++.+.+++.-+..+.+
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~ 314 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSY 314 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 468999999998864332 23333333332 345889999888888877766655443
No 249
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=89.73 E-value=0.18 Score=62.93 Aligned_cols=47 Identities=32% Similarity=0.809 Sum_probs=39.6
Q ss_pred cccccccCCCCCeeecCCCCCcccccccCCCCCC-CCCCCCCCCccCC
Q 000500 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKA-PPSGSWRCPECVS 97 (1460)
Q Consensus 51 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~P~l~~-~p~~~W~C~~C~~ 97 (1460)
-..|.+|..+|++++|+.|+.+||..|..+++.. .+...|.|..|..
T Consensus 47 ~ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~ 94 (613)
T KOG4299|consen 47 ATSCGICKSGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPK 94 (613)
T ss_pred hhhcchhhhcCCccccccCccccchhccCcccCcccccccccccCCCc
Confidence 5679999999999999999999999999998872 2345588888764
No 250
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=88.99 E-value=1.5 Score=46.08 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=33.8
Q ss_pred EEEecCCCHHHHHHHHHHHhccCCCCeeEEeeccc--cccccCccC--CCEEEEecCCC
Q 000500 652 ERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA--GGLGINLAT--ADTVIIYDSDW 706 (1460)
Q Consensus 652 ~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrA--gg~GINL~~--Ad~VIi~DsdW 706 (1460)
+.+.+... .+...+++.|++.....-.+|+++.. .++||||+. +..||+.-.|+
T Consensus 23 i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 34444332 34478899998643310124444444 899999985 78899987665
No 251
>PRK08181 transposase; Validated
Probab=88.85 E-value=3.3 Score=48.37 Aligned_cols=47 Identities=17% Similarity=0.088 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCC
Q 000500 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER 332 (1460)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1460)
+..-|..++.++......+.+.+|.-..|+|||..+.++...+...+
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g 134 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENG 134 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcC
Confidence 55677777754432336788899999999999999999888776653
No 252
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=88.47 E-value=2.1 Score=48.01 Aligned_cols=43 Identities=23% Similarity=0.169 Sum_probs=29.1
Q ss_pred cCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHH
Q 000500 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN 347 (1460)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~q 347 (1460)
...+.+|.-+.|+|||..+.++...+...+. + ++.++.+.+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~-~-~~~i~~~~~~~ 79 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGK-S-AIYLPLAELAQ 79 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-c-EEEEeHHHHHH
Confidence 4556889999999999999888877654431 3 34444444433
No 253
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.43 E-value=2.2 Score=55.09 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=21.9
Q ss_pred cEEEEecCCCCcHHHHHHHHHHHHh
Q 000500 306 HVILADEMGLGKTIQSIAFLASLFG 330 (1460)
Q Consensus 306 ~~ILADemGLGKTiqaIa~l~~L~~ 330 (1460)
..||.-..|+|||..+..|+..|..
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3488999999999999999998865
No 254
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.10 E-value=4.1 Score=50.71 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=34.6
Q ss_pred cceEEEeccccccCCcchH---HHHHHHh--ccccceEeeccccccCCHHHHHHHHHhhcC
Q 000500 428 KWQCMIVDEGHRLKNKDSK---LFSSLKQ--YSTRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1460)
Q Consensus 428 ~w~~VIvDEAHrlKN~~Sk---~~~al~~--l~~~~rLLLTGTPlqNnl~EL~sLL~fL~p 483 (1460)
.+++||||-+-+....... +...+.. ......|+|++|+-.+.+.+++..+..+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 4689999998765433222 2222221 122446889999877777777776665554
No 255
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.80 E-value=13 Score=48.34 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=26.5
Q ss_pred HHHHHHhhhcCC---cEEEEecCCCCcHHHHHHHHHHHHh
Q 000500 294 LNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFG 330 (1460)
Q Consensus 294 vnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~ 330 (1460)
+..|...+..++ ..||....|.|||..|..++..+..
T Consensus 24 v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 24 SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 444444444443 3489999999999999999888754
No 256
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=87.73 E-value=2.4 Score=48.90 Aligned_cols=43 Identities=21% Similarity=0.369 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHhhhcCC-cEEEEecCCCCcHHHHHHHHHHHH
Q 000500 287 HPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLF 329 (1460)
Q Consensus 287 rpyQlegvnwL~~~~~~~~-~~ILADemGLGKTiqaIa~l~~L~ 329 (1460)
.+.+..+++.+......+. .++|.-+.|+|||..+-.++..+.
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3455667777766555544 477899999999988777665543
No 257
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=87.49 E-value=6.1 Score=49.07 Aligned_cols=126 Identities=14% Similarity=0.175 Sum_probs=91.9
Q ss_pred hHHHHHH-HHHHHHH--HcCceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeec
Q 000500 608 GKLQLLD-KMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1460)
Q Consensus 608 gKl~~L~-klL~~l~--~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlST 684 (1460)
.++..+. ++|+.+. ....++|||...---.=.|..+|...++.|+.++--++..+-..+-..|..+... ++|.|-
T Consensus 281 ~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~--iLL~TE 358 (442)
T PF06862_consen 281 ARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKP--ILLYTE 358 (442)
T ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCce--EEEEEh
Confidence 3555544 4777776 3346899998765555568889999999999999999999999999999875433 456666
Q ss_pred ccc-ccccCccCCCEEEEecCCCChhhHHHHHHhhcccCC----CCceEEEEEecC
Q 000500 685 RAG-GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ----TNKVMIFRLITR 735 (1460)
Q Consensus 685 rAg-g~GINL~~Ad~VIi~DsdWNP~~d~QAigRahRiGQ----~k~V~VyrLvt~ 735 (1460)
|+- =.=..+..+.+||+|.+|-+|+-|...+.-...-.+ ...+.|.-|.++
T Consensus 359 R~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 359 RFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred HHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 653 345567789999999999999999888765554333 234555556554
No 258
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=87.24 E-value=0.86 Score=53.57 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=27.1
Q ss_pred CCcEEEEecCCCCcHHHHHHHHHHHHhCCC---CcEEEEE
Q 000500 304 QTHVILADEMGLGKTIQSIAFLASLFGERI---SPHLVVA 340 (1460)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~~~---~p~LIVv 340 (1460)
+.+.+|.-+.|+|||..|.++...+...+. ++++.+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 346789999999999999888887766442 2544444
No 259
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=87.12 E-value=5.4 Score=47.11 Aligned_cols=26 Identities=38% Similarity=0.705 Sum_probs=21.9
Q ss_pred cEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 306 ~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
+.+|.-+.|.|||..+-+++..+...
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~ 65 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGE 65 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 58999999999999988888777543
No 260
>PHA02533 17 large terminase protein; Provisional
Probab=87.02 E-value=3.4 Score=52.80 Aligned_cols=55 Identities=20% Similarity=0.152 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHh-CCCCcEEEEEcc
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ERISPHLVVAPL 342 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~-~~~~p~LIVvP~ 342 (1460)
..|+|+|.+-+..|. .++-.++.-.=..|||..+.+++.++.- .....+++++|.
T Consensus 58 f~L~p~Q~~i~~~~~----~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~ 113 (534)
T PHA02533 58 VQMRDYQKDMLKIMH----KNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHK 113 (534)
T ss_pred cCCcHHHHHHHHHHh----cCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 469999999887762 2344577778889999887766544332 322377778884
No 261
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.97 E-value=3.3 Score=55.22 Aligned_cols=42 Identities=29% Similarity=0.319 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhcC--CcE-EEEecCCCCcHHHHHHHHHHHHhC
Q 000500 290 QLEGLNFLRFSWSKQ--THV-ILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 290 QlegvnwL~~~~~~~--~~~-ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
|...+..|...+..+ .+. ||.-+.|.|||..+..|+..|...
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 334444444444443 244 799999999999999999888653
No 262
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=86.85 E-value=3.5 Score=53.60 Aligned_cols=42 Identities=21% Similarity=0.139 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhhcCCc---EEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 290 QLEGLNFLRFSWSKQTH---VILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~~---~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
|...+..|...+..++- .|+.-+.|.|||..+..|+..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 44445555555555432 4889999999999999999888654
No 263
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=86.83 E-value=2.1 Score=50.96 Aligned_cols=55 Identities=22% Similarity=0.150 Sum_probs=35.2
Q ss_pred cccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHH
Q 000500 271 FQQYEHSPEFLSGGSLH-PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLAS 327 (1460)
Q Consensus 271 ~~~~~~~P~~~~g~~Lr-pyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~ 327 (1460)
+..+...+...+|...| -+|.-++..|.. ..-.=+.|.-.-|+|||+-|+|...+
T Consensus 213 i~~l~~~~~~vwGi~prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgle 268 (436)
T COG1875 213 ILLLKHEDQEVWGIRPRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLE 268 (436)
T ss_pred EEecccCchhhhccCcccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHH
Confidence 33344455556665444 488888887621 22334678889999999988766544
No 264
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=86.52 E-value=0.48 Score=50.20 Aligned_cols=34 Identities=35% Similarity=0.870 Sum_probs=26.4
Q ss_pred eeecCCCCCcccccccCCCCCCC------------------CCCCCCCCccC
Q 000500 63 LMSCDTCTYAYHAKCLVPPLKAP------------------PSGSWRCPECV 96 (1460)
Q Consensus 63 ll~Cd~C~~~~H~~Cl~P~l~~~------------------p~~~W~C~~C~ 96 (1460)
|++|..|.++||+.+|+|+-... ....|.|..|.
T Consensus 124 LFRC~~C~RawH~~HLP~~~~~~~~~~~~~~~~~~~~R~~EYs~~W~C~dC~ 175 (175)
T PF15446_consen 124 LFRCTSCHRAWHFEHLPPPSGTTSDDDDDDDTDLRSQRLKEYSIDWQCKDCA 175 (175)
T ss_pred EEecCCccceeehhhCCCCcCCCCCcccccchhHHHHHHHHhCCccccCCCC
Confidence 89999999999999997753221 13469999984
No 265
>CHL00181 cbbX CbbX; Provisional
Probab=86.29 E-value=1.1 Score=52.69 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=23.4
Q ss_pred CCcEEEEecCCCCcHHHHHHHHHHHHhCC
Q 000500 304 QTHVILADEMGLGKTIQSIAFLASLFGER 332 (1460)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1460)
+.+.+|.-+.|+|||..|-++...+...+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g 87 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLG 87 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 34478999999999999999888776543
No 266
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=86.18 E-value=1.3 Score=37.37 Aligned_cols=42 Identities=12% Similarity=0.416 Sum_probs=35.3
Q ss_pred CChHHHHHHHHHHHhcCCCCcchhhhchhhc-CCCHHHHHHHHHH
Q 000500 969 FSQNQRAAFVQILMRFGVGDFDWKEFTPRLK-QKSYEEIREYGIL 1012 (1460)
Q Consensus 969 F~~w~Rr~Fv~a~~KyG~~~~~~~~ia~el~-~Ks~eEvk~Ya~l 1012 (1460)
|+..+-..|++++.+||.+ +|..|+..+. ++|..+++.+...
T Consensus 4 Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~~~Rt~~qc~~~~~~ 46 (48)
T PF00249_consen 4 WTEEEDEKLLEAVKKYGKD--NWKKIAKRMPGGRTAKQCRSRYQN 46 (48)
T ss_dssp S-HHHHHHHHHHHHHSTTT--HHHHHHHHHSSSSTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc--HHHHHHHHcCCCCCHHHHHHHHHh
Confidence 6777788999999999976 3789999999 9999999977544
No 267
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=85.98 E-value=0.9 Score=58.34 Aligned_cols=166 Identities=15% Similarity=0.219 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHHHHHH-HHHHCCCCeE
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWERE-FATWAPQMNV 361 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~qW~~E-~~kw~P~l~v 361 (1460)
....|||.+-++-|... .-..+.+.-..-+|||...+.++.+.....++|+|+|.|. .....|..+ |.-..
T Consensus 15 ~~~~Py~~eimd~~~~~--~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi----- 87 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDP--SVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMI----- 87 (557)
T ss_pred CCCChhHHHHHHhcCCc--CccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHH-----
Confidence 46889999998876221 2356778888899999999999999888888999999996 555666533 33222
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEeccccccC
Q 000500 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLK 441 (1460)
Q Consensus 362 vvy~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrlK 441 (1460)
..+..-+..+... . .+..+..+.... -... .+.++...+ ...|.+....+|++||..++-
T Consensus 88 ---~~sp~l~~~~~~~------~-----~~~~~~t~~~k~-f~gg-~l~~~ga~S----~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 88 ---RASPVLRRKLSPS------K-----SRDSGNTILYKR-FPGG-FLYLVGANS----PSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred ---HhCHHHHHHhCch------h-----hcccCCchhhee-cCCC-EEEEEeCCC----CcccccCCcCEEEEechhhcc
Confidence 1111111111100 0 000000000000 0011 133333222 346788889999999999983
Q ss_pred ----CcchHHH---HHHHhccccceEeeccccccCCHHHHHH
Q 000500 442 ----NKDSKLF---SSLKQYSTRHRVLLTGTPLQNNLDELFM 476 (1460)
Q Consensus 442 ----N~~Sk~~---~al~~l~~~~rLLLTGTPlqNnl~EL~s 476 (1460)
+..+... .....+....++++..||......-+..
T Consensus 148 ~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~ 189 (557)
T PF05876_consen 148 DDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIER 189 (557)
T ss_pred ccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHH
Confidence 3333333 3344555678899999997665444443
No 268
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=85.84 E-value=7.1 Score=50.99 Aligned_cols=42 Identities=24% Similarity=0.205 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhhcCC---cEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
|...+..|...+..++ ..||.-..|+|||..+..|+..+...
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 3334444444444443 45889999999999999998887643
No 269
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=85.59 E-value=1.8 Score=35.07 Aligned_cols=42 Identities=12% Similarity=0.388 Sum_probs=35.9
Q ss_pred CChHHHHHHHHHHHhcCCCCcchhhhchhhcCCCHHHHHHHHHH
Q 000500 969 FSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGIL 1012 (1460)
Q Consensus 969 F~~w~Rr~Fv~a~~KyG~~~~~~~~ia~el~~Ks~eEvk~Ya~l 1012 (1460)
|+..+...|++++.+||.. +|..|+..+.++|..+|+.|...
T Consensus 2 Wt~eE~~~l~~~~~~~g~~--~w~~Ia~~~~~rs~~~~~~~~~~ 43 (45)
T cd00167 2 WTEEEDELLLEAVKKYGKN--NWEKIAKELPGRTPKQCRERWRN 43 (45)
T ss_pred CCHHHHHHHHHHHHHHCcC--CHHHHHhHcCCCCHHHHHHHHHH
Confidence 6777888999999999963 47899999999999999988654
No 270
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=85.31 E-value=0.6 Score=56.15 Aligned_cols=48 Identities=29% Similarity=0.519 Sum_probs=34.6
Q ss_pred CCccChHHHHHHHHHHHHhccchhHHhhhCcccchHHHHHHhhcCCCC
Q 000500 1081 GKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFI 1128 (1460)
Q Consensus 1081 ~~~w~~eeD~~LL~gi~k~GyG~We~Ik~D~~l~l~~~i~~e~~~~~~ 1128 (1460)
...||.+|+..||-++..||+|||+.|-.-..-+=.+-+.....--|+
T Consensus 72 ~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv 119 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV 119 (438)
T ss_pred CCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence 468999999999999999999999998776643333333333333333
No 271
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=84.69 E-value=3.4 Score=52.41 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhhcCC---cEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
|...+..|...+..++ ..||.-+.|+|||..|-.++..+...
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4455555555455544 67899999999999999998887643
No 272
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.68 E-value=4.1 Score=49.63 Aligned_cols=42 Identities=24% Similarity=0.140 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhhcCC--c-EEEEecCCCCcHHHHHHHHHHHHh
Q 000500 289 YQLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (1460)
Q Consensus 289 yQlegvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~L~~ 330 (1460)
-|...+..|...+..++ + .+|.-+.|+|||..|-+++..+..
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 35556666655555543 3 489999999999999999888763
No 273
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=84.51 E-value=3.6 Score=50.67 Aligned_cols=42 Identities=21% Similarity=0.193 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhhcC------------CcEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 290 QLEGLNFLRFSWSKQ------------THVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 290 QlegvnwL~~~~~~~------------~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
|...+..|......+ ...|+.-..|.|||..|.+|+..+...
T Consensus 10 q~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 10 QEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred hHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 445555555544443 236789999999999999999887654
No 274
>PRK14974 cell division protein FtsY; Provisional
Probab=84.27 E-value=5.7 Score=47.84 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=29.9
Q ss_pred cEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc----ccHHHHHHHH
Q 000500 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL----STLRNWEREF 352 (1460)
Q Consensus 306 ~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~----sll~qW~~E~ 352 (1460)
-.++.-..|.|||.++..++..+...+. +++++..- ....||..-.
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~-~V~li~~Dt~R~~a~eqL~~~a 191 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGF-SVVIAAGDTFRAGAIEQLEEHA 191 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEecCCcCcHHHHHHHHHHH
Confidence 4567889999999988888877765543 45555432 3345554433
No 275
>PRK08084 DNA replication initiation factor; Provisional
Probab=84.23 E-value=5.1 Score=45.74 Aligned_cols=28 Identities=21% Similarity=0.103 Sum_probs=21.8
Q ss_pred CCcEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 304 QTHVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
....+|.-+.|+|||-.+.++...+...
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~ 72 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQR 72 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3567899999999998877777665543
No 276
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=83.79 E-value=5.5 Score=46.71 Aligned_cols=43 Identities=26% Similarity=0.268 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhhc--CCcEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 289 YQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 289 yQlegvnwL~~~~~~--~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
+|...|+-|...... ..+-++.-..|+|||-++++|...|+..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~ 84 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCE 84 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCc
Confidence 687888777555444 3456889999999999999999998764
No 277
>PRK08116 hypothetical protein; Validated
Probab=83.68 E-value=8.3 Score=45.00 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=30.9
Q ss_pred CCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHH
Q 000500 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (1460)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~ 346 (1460)
+.+.+|.-+.|+|||..+.+++..+...+ .+++++.-..++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~-~~v~~~~~~~ll~ 155 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG-VPVIFVNFPQLLN 155 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEEHHHHHH
Confidence 34688999999999999999999988763 3555554333343
No 278
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=83.67 E-value=6 Score=46.93 Aligned_cols=39 Identities=28% Similarity=0.335 Sum_probs=24.6
Q ss_pred ceEEEeccccccCCcc--hHHHHHHHhccccceEeeccccc
Q 000500 429 WQCMIVDEGHRLKNKD--SKLFSSLKQYSTRHRVLLTGTPL 467 (1460)
Q Consensus 429 w~~VIvDEAHrlKN~~--Sk~~~al~~l~~~~rLLLTGTPl 467 (1460)
..+|||||+|++.... ..+...+.......++++|++..
T Consensus 101 ~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 101 GKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 4689999999983322 22333344455666788887653
No 279
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=83.65 E-value=2.1 Score=35.24 Aligned_cols=45 Identities=16% Similarity=0.458 Sum_probs=37.9
Q ss_pred CCChHHHHHHHHHHHhcCCCCcchhhhchhhcCCCHHHHHHHHHHHH
Q 000500 968 GFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFL 1014 (1460)
Q Consensus 968 GF~~w~Rr~Fv~a~~KyG~~~~~~~~ia~el~~Ks~eEvk~Ya~lF~ 1014 (1460)
.|+..+...|++++.+||..+ |..|+..+.++|..+++.+...++
T Consensus 3 ~Wt~~E~~~l~~~~~~~g~~~--w~~Ia~~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 3 EWTEEEDELLIELVKKYGKNN--WEKIAKELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCHHHHHHHHHHHHHHCcCC--HHHHHHHcCCCCHHHHHHHHHHHc
Confidence 477788889999999999744 678999999999999998866543
No 280
>PRK08727 hypothetical protein; Validated
Probab=82.94 E-value=8 Score=44.10 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=22.0
Q ss_pred cEEEEecCCCCcHHHHHHHHHHHHhCC
Q 000500 306 HVILADEMGLGKTIQSIAFLASLFGER 332 (1460)
Q Consensus 306 ~~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1460)
..+|.-..|+|||-.+.++...+...+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~ 69 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAG 69 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 478999999999988888877766553
No 281
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=82.76 E-value=4.7 Score=52.23 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhhcCC---cEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
|-..+..|...+..++ ..||.-..|+|||..|..++..|...
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 4444455555555543 47889999999999999999988654
No 282
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.60 E-value=7.6 Score=49.51 Aligned_cols=42 Identities=26% Similarity=0.254 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhhcC--Cc-EEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 290 QLEGLNFLRFSWSKQ--TH-VILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 290 QlegvnwL~~~~~~~--~~-~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
|...+..|......+ .+ .|+.-..|.|||..|..++..+...
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 334444454444433 23 4889999999999999999888653
No 283
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=82.51 E-value=0.59 Score=49.56 Aligned_cols=47 Identities=28% Similarity=0.758 Sum_probs=33.1
Q ss_pred cccccCC------CCCeeecCCCCCcccccccCCCCCC------CCCCC--CCCCccCCCC
Q 000500 53 SCQACGE------SENLMSCDTCTYAYHAKCLVPPLKA------PPSGS--WRCPECVSPL 99 (1460)
Q Consensus 53 ~C~~C~~------~g~ll~Cd~C~~~~H~~Cl~P~l~~------~p~~~--W~C~~C~~~~ 99 (1460)
.|.+|+. .|.|+.|-+|..+||..||-|--.. +..+. -.|..|....
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~ 61 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIA 61 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChh
Confidence 4778853 2449999999999999999765332 23344 3788887643
No 284
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.29 E-value=5.7 Score=50.89 Aligned_cols=40 Identities=23% Similarity=0.220 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhcCC---cEEEEecCCCCcHHHHHHHHHHHHh
Q 000500 291 LEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFG 330 (1460)
Q Consensus 291 legvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~ 330 (1460)
...++.|...+..++ ..|+.-+.|+|||..|..++..+..
T Consensus 22 ~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 22 QHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 334444444444433 2578999999999999999988864
No 285
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=82.08 E-value=3.9 Score=49.17 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
.++|+|.....-+...-.-....++..+.|.|||..|..|+..+...
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 36889988876665441112235678999999999999999998754
No 286
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=81.88 E-value=9.9 Score=46.65 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=25.8
Q ss_pred CcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEc
Q 000500 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1460)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP 341 (1460)
....|.-..|.|||.++..++..+...+. .+++|..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~Gk-kVglI~a 277 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKK-TVGFITT 277 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCC-cEEEEec
Confidence 34567888999999998888887765543 4555444
No 287
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=81.39 E-value=5.6 Score=50.76 Aligned_cols=42 Identities=21% Similarity=0.200 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhhcCCc---EEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 290 QLEGLNFLRFSWSKQTH---VILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~~---~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
|...+..|......+.- .++.-+.|.|||..+..++..+...
T Consensus 19 qe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 33344444444444432 3789999999999999999888653
No 288
>PF13173 AAA_14: AAA domain
Probab=81.34 E-value=7.2 Score=39.92 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=21.0
Q ss_pred CCcEEEEecCCCCcHHHHHHHHHHHH
Q 000500 304 QTHVILADEMGLGKTIQSIAFLASLF 329 (1460)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~ 329 (1460)
++-.+|.-..|.|||..+..++..+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 45578889999999998887777665
No 289
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=81.25 E-value=1.4 Score=53.31 Aligned_cols=65 Identities=25% Similarity=0.546 Sum_probs=44.9
Q ss_pred cccccccccCC-----CCCeeecCCCCCcccccccCCCC-CCCC-------CCCCCCCccCCCCCccccccccccccCcc
Q 000500 49 AKDDSCQACGE-----SENLMSCDTCTYAYHAKCLVPPL-KAPP-------SGSWRCPECVSPLNDIDKILDCEMRPTVA 115 (1460)
Q Consensus 49 ~~~~~C~~C~~-----~g~ll~Cd~C~~~~H~~Cl~P~l-~~~p-------~~~W~C~~C~~~~~diekiL~~R~~p~~~ 115 (1460)
..-.+|.||-. .|+++.||.|+-..|-.|.--.- ..+| ...|||--|...... =+|.++|...
T Consensus 117 kk~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~----P~CElCPn~~ 192 (707)
T KOG0957|consen 117 KKAVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSL----PHCELCPNRF 192 (707)
T ss_pred ccceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCC----CccccCCCcC
Confidence 34458999964 36699999999999999984320 1122 245999999865422 3577788766
Q ss_pred CC
Q 000500 116 GD 117 (1460)
Q Consensus 116 ~~ 117 (1460)
+.
T Consensus 193 Gi 194 (707)
T KOG0957|consen 193 GI 194 (707)
T ss_pred Cc
Confidence 53
No 290
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=80.99 E-value=7.6 Score=47.41 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhhcCC---cEEEEecCCCCcHHHHHHHHHHHHhCC
Q 000500 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1460)
|..++..|...+..++ .-++.-..|+|||..|.+|+..++...
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 5566666766666653 367899999999999999999998643
No 291
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.48 E-value=5.9 Score=49.98 Aligned_cols=24 Identities=33% Similarity=0.281 Sum_probs=21.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHh
Q 000500 307 VILADEMGLGKTIQSIAFLASLFG 330 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~ 330 (1460)
.||.-+.|.|||..|-.++..+..
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 589999999999999988887754
No 292
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=80.47 E-value=11 Score=45.28 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHhhhcCC---cEEEEecCCCCcHHHHHHHHHHHHhCC
Q 000500 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1460)
.++|+|......|...+..++ ..++....|+||+..|.+|+..+....
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 589999999888877766554 467899999999999999999988654
No 293
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.44 E-value=11 Score=49.12 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhhcCCc---EEEEecCCCCcHHHHHHHHHHHHh
Q 000500 290 QLEGLNFLRFSWSKQTH---VILADEMGLGKTIQSIAFLASLFG 330 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~~---~ILADemGLGKTiqaIa~l~~L~~ 330 (1460)
|...+..|...+..+.- .||.-+.|+|||..+..++..+..
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 55566666555555432 388999999999999999988753
No 294
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.23 E-value=13 Score=45.97 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhhcCC---cEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
|...+..|...+.+++ ..|+.-+.|+|||..|..++..+...
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4444555555555542 36789999999999999999888653
No 295
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=80.13 E-value=7 Score=47.29 Aligned_cols=45 Identities=20% Similarity=0.159 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHhh-h--cCCcEEEEecCCCCcHHHHHHHHHHHHh
Q 000500 286 LHPYQLEGLNFLRFSW-S--KQTHVILADEMGLGKTIQSIAFLASLFG 330 (1460)
Q Consensus 286 LrpyQlegvnwL~~~~-~--~~~~~ILADemGLGKTiqaIa~l~~L~~ 330 (1460)
=|..|++.+......+ . ...+.+|.-+.|+|||..+-.++..+..
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3788888875433332 2 2356889999999999999888887753
No 296
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.80 E-value=9 Score=49.52 Aligned_cols=42 Identities=21% Similarity=0.135 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhhcCC--c-EEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
|...+..|...+..++ + .|+.-..|+|||..|..|+..+...
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 4455555555555443 3 4789999999999999999888743
No 297
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.71 E-value=31 Score=44.91 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=26.9
Q ss_pred HHHHHHhhhcC---CcEEEEecCCCCcHHHHHHHHHHHHh
Q 000500 294 LNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (1460)
Q Consensus 294 vnwL~~~~~~~---~~~ILADemGLGKTiqaIa~l~~L~~ 330 (1460)
+..|...+.++ ...|+.-+.|+|||..|..|+..+..
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 44444444443 24567999999999999999988864
No 298
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=79.56 E-value=6.2 Score=43.86 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=25.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEc
Q 000500 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP 341 (1460)
.+|.-.+|.|||.++.-+++++... ...+.+|+-
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~ 37 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK-GKKVALISA 37 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc-cccceeecC
Confidence 4678899999999998888888777 335555554
No 299
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=79.51 E-value=8 Score=47.58 Aligned_cols=52 Identities=19% Similarity=0.352 Sum_probs=32.3
Q ss_pred cceEEEeccccccCCcc---hHHHHHHHhcc-ccceEeecc--ccccCC--HHHHHHHHH
Q 000500 428 KWQCMIVDEGHRLKNKD---SKLFSSLKQYS-TRHRVLLTG--TPLQNN--LDELFMLMH 479 (1460)
Q Consensus 428 ~w~~VIvDEAHrlKN~~---Sk~~~al~~l~-~~~rLLLTG--TPlqNn--l~EL~sLL~ 479 (1460)
.-++++||-.|.+.+.. -.++..+..+. ....|+||+ +|-.-+ ..+|.+-+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~ 234 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLE 234 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHh
Confidence 35789999999998764 34445555443 344899998 664333 234554444
No 300
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=79.46 E-value=9.3 Score=41.04 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhhcCC--c-EEEEecCCCCcHHHHHHHHHHHHhCCC
Q 000500 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGERI 333 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~L~~~~~ 333 (1460)
|.+.+..|...+.+++ + .|+..+.|.||+..|..|+..++....
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~ 48 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNP 48 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 5566666666666653 3 488889999999999999999887643
No 301
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=79.42 E-value=1.7 Score=38.40 Aligned_cols=26 Identities=42% Similarity=0.837 Sum_probs=21.1
Q ss_pred cChHHHHHHHHHHHHhccchhHHhhhC
Q 000500 1084 WKEEHDSLLLRAVLKHGYGRWQAIVDD 1110 (1460)
Q Consensus 1084 w~~eeD~~LL~gi~k~GyG~We~Ik~D 1110 (1460)
||.+||..|+.++.+||. +|..|-.-
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~ 26 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEH 26 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHH
Confidence 999999999999999995 79887443
No 302
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.01 E-value=5.7 Score=51.57 Aligned_cols=42 Identities=26% Similarity=0.265 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhhcCC--c-EEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
|...+..|...+..++ + .|+.-..|+|||..+..++..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4455555555555543 2 4889999999999999999888653
No 303
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=78.98 E-value=0.83 Score=53.29 Aligned_cols=25 Identities=44% Similarity=0.789 Sum_probs=21.6
Q ss_pred HHhhhhccCCCcccccccchh-hHHH
Q 000500 131 KQYLVKWKGLSYLHCTWVPEK-EFLK 155 (1460)
Q Consensus 131 ~EYlVKWkg~Sy~HctWvpe~-~L~~ 155 (1460)
.+|||||+|++.-.|||.|+. .+.|
T Consensus 64 ~eYlvkW~Gy~~~~ntWEPee~~~~C 89 (270)
T KOG1911|consen 64 IEYLVKWKGYPDPDNTWEPEEHNLDC 89 (270)
T ss_pred ceeeeecCCCCCccccCCchhhcccc
Confidence 479999999999999999997 4444
No 304
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.91 E-value=12 Score=47.61 Aligned_cols=95 Identities=13% Similarity=0.150 Sum_probs=71.8
Q ss_pred hhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHh-cCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEee
Q 000500 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS 683 (1460)
Q Consensus 605 ~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~-~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlS 683 (1460)
..|||......++......|.+|||.+.......-+.+.|.. .|..+..++|.++..+|..+..+...+.. .|++.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~---~IVVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEI---LVVIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCC---CEEEC
Confidence 468999998888888888899999999998877777666654 37789999999999999888776654333 36777
Q ss_pred ccccccccCccCCCEEEEec
Q 000500 684 TRAGGLGINLATADTVIIYD 703 (1460)
Q Consensus 684 TrAgg~GINL~~Ad~VIi~D 703 (1460)
|+..- =+-+.....||+-+
T Consensus 83 Trsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 83 TRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred ChHHH-cCcccCCCEEEEEC
Confidence 77632 23455677777765
No 305
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.83 E-value=11 Score=47.68 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhcC---CcEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 292 EGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 292 egvnwL~~~~~~~---~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
..+..|...+..+ ...||.-..|+|||..|..++..+...
T Consensus 20 ~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 20 VLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 3444454444444 357899999999999998888777543
No 306
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=78.71 E-value=12 Score=47.02 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=25.8
Q ss_pred CcEEEEecCCCCcHHHHHHHHHHHHhCCCC-cEEEE
Q 000500 305 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVV 339 (1460)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L~~~~~~-p~LIV 339 (1460)
...+|.-..|+|||..+-++...+.....+ .++.|
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi 184 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV 184 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 357899999999999988888887665433 33444
No 307
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=78.49 E-value=1.4 Score=59.88 Aligned_cols=49 Identities=41% Similarity=1.155 Sum_probs=43.0
Q ss_pred ccccccccCCCCC--eeecCCCCCcccccccCCCCCCCCCCCCCCCccCCC
Q 000500 50 KDDSCQACGESEN--LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1460)
Q Consensus 50 ~~~~C~~C~~~g~--ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 98 (1460)
....|..|..+.. ++.|+.|...||..|+.|++..++.+.|.|+.|...
T Consensus 154 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred cchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 3566999988774 349999999999999999999999999999999864
No 308
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=78.37 E-value=5.6 Score=50.61 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=71.1
Q ss_pred hcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCC-cEEEEEcc-cc----HHHHHHHHHHHCCCCeEEEEEcChhHHHHHH
Q 000500 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-ST----LRNWEREFATWAPQMNVVMYVGTSQARNIIR 375 (1460)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~-p~LIVvP~-sl----l~qW~~E~~kw~P~l~vvvy~G~~~~r~~i~ 375 (1460)
.++-.+.| -+=--|||...+.+|..++..-.+ .+..|+-. ++ +..-...+.+|+|.-+++.-.|+.-
T Consensus 201 KQkaTVFL-VPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI------ 273 (668)
T PHA03372 201 KQKATVFL-VPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVI------ 273 (668)
T ss_pred hccceEEE-ecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEE------
Confidence 34444444 356679999988888888775444 77888873 33 2334555678998766533322110
Q ss_pred HhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEeccccccCCcchHHHHHHHhcc
Q 000500 376 EYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYS 455 (1460)
Q Consensus 376 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l~ 455 (1460)
-+.++ ..+.-++..| ......++.-.|++++|||||-++...=...--+...+
T Consensus 274 --~~s~p---------------------g~Kst~~fas----c~n~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~ 326 (668)
T PHA03372 274 --SIDHR---------------------GAKSTALFAS----CYNTNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQN 326 (668)
T ss_pred --EEecC---------------------CCcceeeehh----hccCccccCCCCCEEEEehhhccCHHHHHHhhhhhccc
Confidence 01111 0111122222 12345677788999999999998754322222222333
Q ss_pred ccceEeeccc
Q 000500 456 TRHRVLLTGT 465 (1460)
Q Consensus 456 ~~~rLLLTGT 465 (1460)
....+.+|.|
T Consensus 327 ~~KiIfISS~ 336 (668)
T PHA03372 327 TTKIIFISST 336 (668)
T ss_pred CceEEEEeCC
Confidence 4445666544
No 309
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=78.35 E-value=26 Score=45.39 Aligned_cols=130 Identities=21% Similarity=0.248 Sum_probs=90.5
Q ss_pred EEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHH-H
Q 000500 535 ILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQL-L 613 (1460)
Q Consensus 535 iv~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~~~~~~~~~lv~~SgKl~~-L 613 (1460)
.++..||..|+...+.|......- .-+++|-+ + + -.|||..+ +
T Consensus 258 ~LPF~LT~aQ~~vi~EI~~Dl~~~------------~~M~RLlQ---------G---D------------VGSGKTvVA~ 301 (677)
T COG1200 258 ALPFKLTNAQKRVIKEILADLASP------------VPMNRLLQ---------G---D------------VGSGKTVVAL 301 (677)
T ss_pred hCCCCccHHHHHHHHHHHhhhcCc------------hhhHHHhc---------c---C------------cCCCHHHHHH
Confidence 456889999999998886653210 01112211 0 0 14677554 4
Q ss_pred HHHHHHHHHcCceEEEEecch----hhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeecccc-c
Q 000500 614 DKMMVKLKEQGHRVLIYSQFQ----HMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG-G 688 (1460)
Q Consensus 614 ~klL~~l~~~g~KVLIFSq~~----~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAg-g 688 (1460)
..++. ..+.|..+.+....- ...+-+.++|...|+.+..++|++++..|.+++.+..++..+ +++.|.|. -
T Consensus 302 laml~-ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~---ivVGTHALiQ 377 (677)
T COG1200 302 LAMLA-AIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEID---IVVGTHALIQ 377 (677)
T ss_pred HHHHH-HHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCC---EEEEcchhhh
Confidence 44444 456687887776642 345667888888899999999999999999999999765554 88999995 7
Q ss_pred cccCccCCCEEEEecC
Q 000500 689 LGINLATADTVIIYDS 704 (1460)
Q Consensus 689 ~GINL~~Ad~VIi~Ds 704 (1460)
..+++...-.||+=+.
T Consensus 378 d~V~F~~LgLVIiDEQ 393 (677)
T COG1200 378 DKVEFHNLGLVIIDEQ 393 (677)
T ss_pred cceeecceeEEEEecc
Confidence 7888888888887543
No 310
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=78.28 E-value=1.7 Score=47.13 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=25.9
Q ss_pred ccccEEEecHHHHHhhhc--ccC--CCcceEEEeccccccCC
Q 000500 405 IKFDVLLTSYEMINLDSA--SLK--PIKWQCMIVDEGHRLKN 442 (1460)
Q Consensus 405 ~~fdVvItSYe~l~~d~~--~L~--~i~w~~VIvDEAHrlKN 442 (1460)
...||||++|..+..... .+. ..+-.+|||||||+|-+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 467899999999875422 221 23446899999999854
No 311
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=78.05 E-value=12 Score=49.96 Aligned_cols=59 Identities=14% Similarity=0.027 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccH
Q 000500 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1460)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll 345 (1460)
+..|.+-|.+++..+. ..++-.+|....|+|||...-+++..+...+ .++++++|....
T Consensus 350 ~~~Ls~~Q~~Av~~i~---~s~~~~il~G~aGTGKTtll~~i~~~~~~~g-~~V~~~ApTg~A 408 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVT---GSGDIAVVVGRAGTGKSTMLKAAREAWEAAG-YRVIGAALSGKA 408 (744)
T ss_pred cCCCCHHHHHHHHHHh---cCCCEEEEEecCCCCHHHHHHHHHHHHHhCC-CeEEEEeCcHHH
Confidence 4569999999998763 2245678999999999988766655554432 378888897544
No 312
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=77.80 E-value=12 Score=44.18 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=28.1
Q ss_pred cccCCCcceEEEecccccc-CCcch---HHHHHHHhccccce--Eeecccc
Q 000500 422 ASLKPIKWQCMIVDEGHRL-KNKDS---KLFSSLKQYSTRHR--VLLTGTP 466 (1460)
Q Consensus 422 ~~L~~i~w~~VIvDEAHrl-KN~~S---k~~~al~~l~~~~r--LLLTGTP 466 (1460)
..|+.+.-.+|||||.|++ .+... ....+|+.+....+ +.+.||+
T Consensus 139 ~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 139 RLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 4566777889999999996 33333 33444455544333 5566776
No 313
>PF13245 AAA_19: Part of AAA domain
Probab=77.21 E-value=5.7 Score=37.24 Aligned_cols=44 Identities=25% Similarity=0.275 Sum_probs=32.8
Q ss_pred CCcEEEEecCCCCcHHHHHHHHHHHHhC---CCCcEEEEEccccHHH
Q 000500 304 QTHVILADEMGLGKTIQSIAFLASLFGE---RISPHLVVAPLSTLRN 347 (1460)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~---~~~p~LIVvP~sll~q 347 (1460)
+.-.++--..|+|||.+++..+.++... ...++||++|....-+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD 56 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH
Confidence 4445668999999999999888888742 2348999999754433
No 314
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.82 E-value=8.7 Score=48.91 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhhcCC--cE-EEEecCCCCcHHHHHHHHHHHHhC
Q 000500 290 QLEGLNFLRFSWSKQT--HV-ILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~--~~-ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
|...+..|......+. +. ++.-+.|+|||..+.+|+..+...
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4445555544444443 33 899999999999999999888643
No 315
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=76.79 E-value=20 Score=46.64 Aligned_cols=59 Identities=17% Similarity=0.061 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc-ccHHH
Q 000500 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRN 347 (1460)
Q Consensus 288 pyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~-sll~q 347 (1460)
|+=++-++-+...+.+.-.++++ +=|-|||..+..++..+.......++|.+|. ++...
T Consensus 172 ~~~~~~id~~~~~fkq~~tV~ta-PRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~e 231 (752)
T PHA03333 172 PRTLREIDRIFDEYGKCYTAATV-PRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLT 231 (752)
T ss_pred hhhHHHHHHHHHHHhhcceEEEe-ccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHH
Confidence 34445566666666666666655 6899999887666555554222378999994 44433
No 316
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=76.63 E-value=3 Score=36.96 Aligned_cols=28 Identities=32% Similarity=0.589 Sum_probs=25.2
Q ss_pred CCccChHHHHHHHHHHHHhccchh---HHhh
Q 000500 1081 GKFWKEEHDSLLLRAVLKHGYGRW---QAIV 1108 (1460)
Q Consensus 1081 ~~~w~~eeD~~LL~gi~k~GyG~W---e~Ik 1108 (1460)
...||+|+-...|.+|..+|.|.| ..|.
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~ 33 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRIL 33 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHH
Confidence 457999999999999999999999 7664
No 317
>PRK05580 primosome assembly protein PriA; Validated
Probab=76.45 E-value=16 Score=48.28 Aligned_cols=95 Identities=11% Similarity=0.109 Sum_probs=71.7
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHh-cCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeec
Q 000500 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1460)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~-~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlST 684 (1460)
.|||......++......|.++||.+.......-+.+.|.. .|.....++|+++..+|.+...+...+.. .++++|
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~---~IVVgT 248 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEA---KVVIGA 248 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCC---CEEEec
Confidence 57888888777777777899999999998887776666654 47889999999999999888777755433 367888
Q ss_pred cccccccCccCCCEEEEecC
Q 000500 685 RAGGLGINLATADTVIIYDS 704 (1460)
Q Consensus 685 rAgg~GINL~~Ad~VIi~Ds 704 (1460)
+..- =+.+.....||+-+-
T Consensus 249 rsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 249 RSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred cHHh-cccccCCCEEEEECC
Confidence 7542 245667777777653
No 318
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=76.13 E-value=0.77 Score=51.89 Aligned_cols=46 Identities=15% Similarity=0.426 Sum_probs=34.4
Q ss_pred cccccccCCCC---------CeeecCCCCCcccccccCCCCCC---CCCCCCCCCccC
Q 000500 51 DDSCQACGESE---------NLMSCDTCTYAYHAKCLVPPLKA---PPSGSWRCPECV 96 (1460)
Q Consensus 51 ~~~C~~C~~~g---------~ll~Cd~C~~~~H~~Cl~P~l~~---~p~~~W~C~~C~ 96 (1460)
...|..|-++. .+++|..|..++|.+|+.-+..- +-.-.|.|..|.
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~ 315 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCE 315 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccH
Confidence 44588886642 39999999999999999665432 224579999985
No 319
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.04 E-value=12 Score=48.84 Aligned_cols=42 Identities=19% Similarity=0.076 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhhcCC---cEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
|...+..|...+..++ ..||.-+.|+|||..|.+++..+...
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 4455555655555543 45889999999999999999988653
No 320
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=75.87 E-value=13 Score=41.83 Aligned_cols=30 Identities=20% Similarity=0.111 Sum_probs=23.7
Q ss_pred hcCCcEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 302 SKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
......+|.-+.|+|||..+.++...+...
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~ 69 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYG 69 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345678999999999999888877766543
No 321
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=75.72 E-value=25 Score=45.72 Aligned_cols=108 Identities=17% Similarity=0.224 Sum_probs=60.4
Q ss_pred cCCcEEEEecCCCCcHHHHHHHHHHHHhCCCC-cEEEEEcc-ccHHHHHHH----HHHHCCCCeEEEEEcChhHHHHHHH
Q 000500 303 KQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STLRNWERE----FATWAPQMNVVMYVGTSQARNIIRE 376 (1460)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~-p~LIVvP~-sll~qW~~E----~~kw~P~l~vvvy~G~~~~r~~i~~ 376 (1460)
+.+-.++.-.==-|||......+..+.....+ .+++++|. ++...-..| +++|+|...+....|. .| .
T Consensus 253 kqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-----~I-~ 326 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-----TI-S 326 (738)
T ss_pred hccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-----EE-E
Confidence 34445666677789998777666666544334 88999994 554444444 4567765433222221 11 1
Q ss_pred hhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEeccccccCC
Q 000500 377 YEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (1460)
Q Consensus 377 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrlKN 442 (1460)
+.++++ .+--+...|- .....++...++++||||||-|+.
T Consensus 327 --i~f~nG--------------------~kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk~ 366 (738)
T PHA03368 327 --FSFPDG--------------------SRSTIVFASS----HNTNGIRGQDFNLLFVDEANFIRP 366 (738)
T ss_pred --EEecCC--------------------CccEEEEEec----cCCCCccCCcccEEEEechhhCCH
Confidence 111111 0011222211 234456777899999999999975
No 322
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=75.51 E-value=11 Score=47.37 Aligned_cols=41 Identities=15% Similarity=-0.010 Sum_probs=27.7
Q ss_pred CcEEEEecCCCCcHHHHHHHHHHHHhCCCC-cEEEEEccccH
Q 000500 305 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTL 345 (1460)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L~~~~~~-p~LIVvP~sll 345 (1460)
...+|.-+.|+|||..+-++..++.....+ .++.|.+...+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~ 183 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA 183 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 457799999999998887877777654333 44544444433
No 323
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=75.19 E-value=10 Score=48.85 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=21.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
.|+.-+.|.|||..|.+++..+...
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhccc
Confidence 5899999999999999999888643
No 324
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=74.52 E-value=11 Score=46.60 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=25.6
Q ss_pred cEEEEecCCCCcHHHHHHHHHHHHhCCCC-cEEEE
Q 000500 306 HVILADEMGLGKTIQSIAFLASLFGERIS-PHLVV 339 (1460)
Q Consensus 306 ~~ILADemGLGKTiqaIa~l~~L~~~~~~-p~LIV 339 (1460)
..+|.-..|+|||..+-++...+.....+ .++.+
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi 172 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV 172 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 46799999999999998888887765433 44444
No 325
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=74.03 E-value=15 Score=44.16 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHhhhcCC---cEEEEecCCCCcHHHHHHHHHHHHhCC
Q 000500 286 LHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1460)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1460)
++|+|...-.-|...+..++ .-++.-+.|+||+..|.+|+..+....
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 57888888777777766654 345789999999999999999987643
No 326
>PRK06893 DNA replication initiation factor; Validated
Probab=74.01 E-value=19 Score=40.98 Aligned_cols=27 Identities=11% Similarity=-0.023 Sum_probs=21.4
Q ss_pred cEEEEecCCCCcHHHHHHHHHHHHhCC
Q 000500 306 HVILADEMGLGKTIQSIAFLASLFGER 332 (1460)
Q Consensus 306 ~~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1460)
..+|.-..|+|||-.+.++...+...+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~ 67 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 358999999999988888777765543
No 327
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=73.56 E-value=8 Score=45.20 Aligned_cols=53 Identities=21% Similarity=0.184 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCC-C--CcEEEEEcccc
Q 000500 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-I--SPHLVVAPLST 344 (1460)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~-~--~p~LIVvP~sl 344 (1460)
|.+-|..+|++ ..+..++-...|+|||.+.+.-+.++...+ . ..+|+|+++..
T Consensus 1 l~~eQ~~~i~~------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~ 56 (315)
T PF00580_consen 1 LTDEQRRIIRS------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNA 56 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHH
Confidence 55778888764 356677777799999999988888877654 3 38999998654
No 328
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.16 E-value=15 Score=46.56 Aligned_cols=41 Identities=27% Similarity=0.191 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhcCC--cE-EEEecCCCCcHHHHHHHHHHHHh
Q 000500 290 QLEGLNFLRFSWSKQT--HV-ILADEMGLGKTIQSIAFLASLFG 330 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~--~~-ILADemGLGKTiqaIa~l~~L~~ 330 (1460)
|...+..|......+. ++ ++.-+.|.|||..|..++..+..
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4455555555555543 33 67999999999999888887753
No 329
>PRK04132 replication factor C small subunit; Provisional
Probab=73.05 E-value=9.9 Score=51.01 Aligned_cols=49 Identities=14% Similarity=0.305 Sum_probs=30.2
Q ss_pred cceEEEeccccccCCc-chHHHHHHHhccccceEeeccccccCCHHHHHH
Q 000500 428 KWQCMIVDEGHRLKNK-DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFM 476 (1460)
Q Consensus 428 ~w~~VIvDEAHrlKN~-~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~s 476 (1460)
++.+||+||||++-.. ...+.+.+.......+++|+.++...-+.-|-+
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS 679 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 679 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh
Confidence 4679999999999532 223334444445667888887775444434443
No 330
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=72.90 E-value=2.5 Score=52.25 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=40.9
Q ss_pred cccccccccCCCCCeeecCCCCCcccccccCCCCCCC-CCCCCCCCccCCC
Q 000500 49 AKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAP-PSGSWRCPECVSP 98 (1460)
Q Consensus 49 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~P~l~~~-p~~~W~C~~C~~~ 98 (1460)
..+.+|..|.-.|..+.|+.|-|+||..|+.|..... ...-|.||-|..-
T Consensus 58 N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s~ 108 (588)
T KOG3612|consen 58 NIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYSF 108 (588)
T ss_pred CCCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCccccc
Confidence 4577899999999999999999999999998765432 2345999999763
No 331
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=72.72 E-value=14 Score=44.38 Aligned_cols=43 Identities=26% Similarity=0.312 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhhcCC--cE-EEEecCCCCcHHHHHHHHHHHHhC
Q 000500 289 YQLEGLNFLRFSWSKQT--HV-ILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 289 yQlegvnwL~~~~~~~~--~~-ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
.|...+..|...+..++ +. ++.-+-|.|||..|..++..+...
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~ 55 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCL 55 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 35555666666655543 34 889999999999999999988754
No 332
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=72.60 E-value=14 Score=42.54 Aligned_cols=60 Identities=27% Similarity=0.303 Sum_probs=35.8
Q ss_pred HHHHHHHhhhcCC-cEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHH------HHHHHHHH
Q 000500 293 GLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR------NWEREFAT 354 (1460)
Q Consensus 293 gvnwL~~~~~~~~-~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~------qW~~E~~k 354 (1460)
++.-+......++ -+.+.-++|+|||+..=+++..+-.. ...+|+.|+.++. -|..++..
T Consensus 39 ~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d--~~~~v~i~~~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 39 ALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNED--QVAVVVIDKPTLSDATLLEAIVADLES 105 (269)
T ss_pred HHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCC--ceEEEEecCcchhHHHHHHHHHHHhcc
Confidence 3333333334444 45678899999999887555554322 2455788876653 36665543
No 333
>PRK11054 helD DNA helicase IV; Provisional
Probab=72.55 E-value=16 Score=48.19 Aligned_cols=85 Identities=18% Similarity=0.140 Sum_probs=57.8
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCC---CCcEEEEEccccHHHHHHH-HHHHCC--
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLRNWERE-FATWAP-- 357 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~---~~p~LIVvP~sll~qW~~E-~~kw~P-- 357 (1460)
..|.+-|.++|.. ..++.++....|+|||.+.++-+.+|...+ +..+|+++......+..++ +....+
T Consensus 195 ~~L~~~Q~~av~~------~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~ 268 (684)
T PRK11054 195 SPLNPSQARAVVN------GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTE 268 (684)
T ss_pred CCCCHHHHHHHhC------CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCC
Confidence 4599999999852 234566666799999999999999988653 2389999998777776655 555553
Q ss_pred CCeEEEEEcChhHHHHHHH
Q 000500 358 QMNVVMYVGTSQARNIIRE 376 (1460)
Q Consensus 358 ~l~vvvy~G~~~~r~~i~~ 376 (1460)
.+.+..||+- ...++++
T Consensus 269 ~v~v~TFHSl--al~Il~~ 285 (684)
T PRK11054 269 DITARTFHAL--ALHIIQQ 285 (684)
T ss_pred CcEEEeHHHH--HHHHHHH
Confidence 2344444432 3344544
No 334
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=72.54 E-value=16 Score=49.97 Aligned_cols=59 Identities=14% Similarity=-0.009 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccH
Q 000500 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1460)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll 345 (1460)
|..|.+-|.+++..+. ....-++|.-..|+|||.+.-+ +..++......++.++|....
T Consensus 344 g~~Ls~eQr~Av~~il---~s~~v~vv~G~AGTGKTT~l~~-~~~~~e~~G~~V~~~ApTGkA 402 (988)
T PRK13889 344 GLVLSGEQADALAHVT---DGRDLGVVVGYAGTGKSAMLGV-AREAWEAAGYEVRGAALSGIA 402 (988)
T ss_pred CCCCCHHHHHHHHHHh---cCCCeEEEEeCCCCCHHHHHHH-HHHHHHHcCCeEEEecCcHHH
Confidence 4579999999998763 3244578999999999987444 333333333367888886543
No 335
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=72.44 E-value=1.4 Score=41.94 Aligned_cols=43 Identities=26% Similarity=0.690 Sum_probs=29.2
Q ss_pred ccccCCCCC---eeecCCCCCcccccccCCCCCCCCCCCCCCCccCCC
Q 000500 54 CQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1460)
Q Consensus 54 C~~C~~~g~---ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 98 (1460)
|..|.-+|+ ++.+ .|...||+.|+.--+.... ..=.||-|..+
T Consensus 35 Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~~-~~~~CPmCR~~ 80 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQS-SKGQCPMCRQP 80 (85)
T ss_pred CCCccCCCCCCceeec-cCccHHHHHHHHHHHcccc-CCCCCCCcCCe
Confidence 444444554 4444 4999999999987777642 23389999864
No 336
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=72.26 E-value=2.4 Score=37.01 Aligned_cols=30 Identities=27% Similarity=0.862 Sum_probs=25.6
Q ss_pred cccccccCC----CCCeeecCCCCCcccccccCC
Q 000500 51 DDSCQACGE----SENLMSCDTCTYAYHAKCLVP 80 (1460)
Q Consensus 51 ~~~C~~C~~----~g~ll~Cd~C~~~~H~~Cl~P 80 (1460)
...|.+|+. +++++.|..|...||-.|...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 456999986 567999999999999999854
No 337
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=72.07 E-value=32 Score=42.11 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=28.7
Q ss_pred hcCCcEEEEecCCCCcHHHHHHHHHHHHhC-CCCcEEEEEc
Q 000500 302 SKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP 341 (1460)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~-~~~p~LIVvP 341 (1460)
..+...+|.-.+|.|||.++..++..+... +..++.+|+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~ 175 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTT 175 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 446677899999999999998888776433 3335555554
No 338
>PRK09183 transposase/IS protein; Provisional
Probab=71.91 E-value=15 Score=42.63 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEE
Q 000500 290 QLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIV 339 (1460)
++.++.|+ ..+.+.+|.-+.|.|||..+.++...+...+ ..++.+
T Consensus 92 ~L~~~~~i----~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G-~~v~~~ 136 (259)
T PRK09183 92 SLRSLSFI----ERNENIVLLGPSGVGKTHLAIALGYEAVRAG-IKVRFT 136 (259)
T ss_pred HHhcCCch----hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEE
Confidence 34444554 6788899999999999999888866654433 244444
No 339
>PRK04195 replication factor C large subunit; Provisional
Probab=71.29 E-value=28 Score=44.20 Aligned_cols=43 Identities=26% Similarity=0.330 Sum_probs=29.8
Q ss_pred CCCHHHHHHH-HHHHHhhhc---CCcEEEEecCCCCcHHHHHHHHHHH
Q 000500 285 SLHPYQLEGL-NFLRFSWSK---QTHVILADEMGLGKTIQSIAFLASL 328 (1460)
Q Consensus 285 ~LrpyQlegv-nwL~~~~~~---~~~~ILADemGLGKTiqaIa~l~~L 328 (1460)
..++.++..+ .|+ ..|.+ ....+|.-+.|.|||..+-+++..+
T Consensus 17 vg~~~~~~~l~~~l-~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 17 VGNEKAKEQLREWI-ESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred cCCHHHHHHHHHHH-HHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3455555555 344 44444 4678999999999999887777664
No 340
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=71.27 E-value=22 Score=44.61 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=26.3
Q ss_pred CcEEEEecCCCCcHHHHHHHHHHHHhCCCC-cEEEEE
Q 000500 305 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVA 340 (1460)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L~~~~~~-p~LIVv 340 (1460)
...+|.-+.|+|||..+-++...+.....+ .++.|.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 357899999999999888888877665433 444443
No 341
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=70.82 E-value=19 Score=46.59 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
.|+.-+-|+|||..|-.|+..+...
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4679999999999999988877543
No 342
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=70.43 E-value=1.1 Score=59.22 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=41.9
Q ss_pred ccccccccccCCCCCeeecCC-CCCcccc-cccCCC--CCCCCCCCCCCCccCCCC
Q 000500 48 DAKDDSCQACGESENLMSCDT-CTYAYHA-KCLVPP--LKAPPSGSWRCPECVSPL 99 (1460)
Q Consensus 48 ~~~~~~C~~C~~~g~ll~Cd~-C~~~~H~-~Cl~P~--l~~~p~~~W~C~~C~~~~ 99 (1460)
..+..-|.+|+..+.+++|++ |+..||+ .||+-. -...+++-|.|++|....
T Consensus 425 wfi~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rq 480 (1414)
T KOG1473|consen 425 WFISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQ 480 (1414)
T ss_pred hceeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHh
Confidence 345677999999999999986 9999999 999732 245678889999997533
No 343
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=70.42 E-value=12 Score=45.87 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=35.0
Q ss_pred hcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHH
Q 000500 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (1460)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~ 352 (1460)
..+.-.+|.-++|.|||..++.++..+...+ +++|.|.-.....|.....
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g-~~VlYvs~EEs~~qi~~Ra 129 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRG-GKVLYVSGEESPEQIKLRA 129 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCcCHHHHHHHH
Confidence 3455578899999999999998887765542 4778777655555544333
No 344
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=70.28 E-value=6.8 Score=42.84 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=32.3
Q ss_pred hcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHH
Q 000500 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (1460)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~ 353 (1460)
.++.|.+|.-.+|.|||..|.+++..+...+. +++.+. ...+..+++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~-~v~f~~----~~~L~~~l~ 91 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGY-SVLFIT----ASDLLDELK 91 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEE----HHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCc-ceeEee----cCceecccc
Confidence 56788999999999999999999998887542 555553 334445554
No 345
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=70.03 E-value=20 Score=46.43 Aligned_cols=42 Identities=19% Similarity=-0.019 Sum_probs=27.3
Q ss_pred cEEEEecCCCCcHHHHHHHHHHHHhCCCC-cEEEEEccccHHH
Q 000500 306 HVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTLRN 347 (1460)
Q Consensus 306 ~~ILADemGLGKTiqaIa~l~~L~~~~~~-p~LIVvP~sll~q 347 (1460)
..+|.-..|+|||..+.++..++.....+ .++.+.-..++..
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~e 358 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNE 358 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH
Confidence 47889999999998888888777653323 4444433333333
No 346
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.02 E-value=28 Score=44.68 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhhcCC--c-EEEEecCCCCcHHHHHHHHHHHHh
Q 000500 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~L~~ 330 (1460)
|...+..|...+..++ + .|+.-+.|.|||..|-.|+..+..
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3344444444334332 3 489999999999999999888764
No 347
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=69.87 E-value=1.4 Score=58.94 Aligned_cols=25 Identities=48% Similarity=1.136 Sum_probs=22.8
Q ss_pred HHhhhhccCCCcccccccchhhHHH
Q 000500 131 KQYLVKWKGLSYLHCTWVPEKEFLK 155 (1460)
Q Consensus 131 ~EYlVKWkg~Sy~HctWvpe~~L~~ 155 (1460)
.+|||||+|.+|-.|||+.+..+..
T Consensus 300 ~eYLvKW~~LpY~e~TWE~~~~I~~ 324 (1373)
T KOG0384|consen 300 PEYLVKWRGLPYEECTWEDAEDIAK 324 (1373)
T ss_pred ceeEEEecCCCcccccccchhhhhh
Confidence 5999999999999999999987753
No 348
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=69.87 E-value=16 Score=49.66 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhh--cCCcEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 290 QLEGLNFLRFSWS--KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 290 QlegvnwL~~~~~--~~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
|..-+..++..+. ...+.||.-+.|.|||..+=.++..+...
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~ 235 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAG 235 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhC
Confidence 3334666554333 35689999999999999887777776543
No 349
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=69.34 E-value=15 Score=42.50 Aligned_cols=66 Identities=23% Similarity=0.272 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHH
Q 000500 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (1460)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~ 352 (1460)
+.-.++..+.-+...+..+.+.+|.-..|.|||..++|+...+...+ .+++++.-..++.++...+
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g-~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 87 IDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAG-ISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred hhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEEHHHHHHHHHHHH
Confidence 33455555544444456888999999999999999999999998332 3667766566666655544
No 350
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=69.28 E-value=21 Score=47.19 Aligned_cols=42 Identities=21% Similarity=0.183 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhhcCC--c-EEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
|-..+..|......++ + .|+.-+.|.|||..|-.++..+...
T Consensus 23 Qe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 23 QDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 3334444444444432 3 4789999999999999998887653
No 351
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=68.89 E-value=35 Score=45.79 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=31.4
Q ss_pred CCHHHHHHHHH-HHHhhhc-CC-cE-EEEecCCCCcHHHHHHHHHHHHh
Q 000500 286 LHPYQLEGLNF-LRFSWSK-QT-HV-ILADEMGLGKTIQSIAFLASLFG 330 (1460)
Q Consensus 286 LrpyQlegvnw-L~~~~~~-~~-~~-ILADemGLGKTiqaIa~l~~L~~ 330 (1460)
=|+-|++.|.. |...... +. ++ +|.-.+|+|||.++-.++..|..
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47788888754 4333332 22 34 48999999999999988877743
No 352
>PRK05642 DNA replication initiation factor; Validated
Probab=68.82 E-value=19 Score=41.12 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=24.4
Q ss_pred eEEEeccccccCCcc---hHHHHHHHhcc-ccceEeeccc
Q 000500 430 QCMIVDEGHRLKNKD---SKLFSSLKQYS-TRHRVLLTGT 465 (1460)
Q Consensus 430 ~~VIvDEAHrlKN~~---Sk~~~al~~l~-~~~rLLLTGT 465 (1460)
++||||+.|.+.+.. ..++..+..+. ...++++|+|
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 679999999886543 33555555443 3567888887
No 353
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=68.36 E-value=22 Score=46.94 Aligned_cols=111 Identities=21% Similarity=0.249 Sum_probs=87.0
Q ss_pred EeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHH
Q 000500 536 LRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDK 615 (1460)
Q Consensus 536 v~v~Ls~~Qk~~Y~~il~~~~~~l~~~~~~~~~l~nil~~LRk~c~hP~L~~~~e~~~~~~~~~~~~lv~~SgKl~~L~k 615 (1460)
....++..|...+..|.... -+.+++|+.++ ..|||.++...
T Consensus 195 ~~~~Ln~~Q~~a~~~i~~~~-----------------------~~~~~~Ll~Gv---------------TGSGKTEvYl~ 236 (730)
T COG1198 195 EWLALNQEQQAAVEAILSSL-----------------------GGFAPFLLDGV---------------TGSGKTEVYLE 236 (730)
T ss_pred cccccCHHHHHHHHHHHHhc-----------------------ccccceeEeCC---------------CCCcHHHHHHH
Confidence 35678888988888775431 23567777764 46999999999
Q ss_pred HHHHHHHcCceEEEEecchhhHHHHHHHHHhc-CCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeecccc
Q 000500 616 MMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (1460)
Q Consensus 616 lL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~-g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAg 687 (1460)
++....++|+.|||-..-+....-+...+..+ |.++..++++.+..+|.....+...+.. .+++.||++
T Consensus 237 ~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~---~vVIGtRSA 306 (730)
T COG1198 237 AIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEA---RVVIGTRSA 306 (730)
T ss_pred HHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCc---eEEEEechh
Confidence 99999999999999999888777666666543 7899999999999999998888865433 367777763
No 354
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=68.27 E-value=17 Score=43.97 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHhhhcCCc-EEEEecCCCCcHHHHHHHHHHHHhCC
Q 000500 286 LHPYQLEGLNFLRFSWSKQTH-VILADEMGLGKTIQSIAFLASLFGER 332 (1460)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~-~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1460)
++|+|...-+-|...-.+-.+ .++.-..|.|||..|..|+..+....
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 578888877666554222223 45789999999999999999987653
No 355
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=68.25 E-value=30 Score=39.06 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=25.0
Q ss_pred cceEEEeccccccCCcch---HHHHHHHhc-cccceEeecc
Q 000500 428 KWQCMIVDEGHRLKNKDS---KLFSSLKQY-STRHRVLLTG 464 (1460)
Q Consensus 428 ~w~~VIvDEAHrlKN~~S---k~~~al~~l-~~~~rLLLTG 464 (1460)
..++||||..|.+.+... .++..+..+ ....++++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 468899999999987642 344444444 2456777776
No 356
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=67.85 E-value=30 Score=44.82 Aligned_cols=40 Identities=18% Similarity=0.089 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhcC---CcEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 292 EGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 292 egvnwL~~~~~~~---~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
..+..|...+..+ ...|+.-+.|.|||..|..++..+...
T Consensus 23 ~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 23 LIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3444444444443 235789999999999999999988654
No 357
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.66 E-value=38 Score=43.99 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=27.5
Q ss_pred HHHHHHHHhhhcCC--c-EEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 292 EGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 292 egvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
..+..|......++ + .|+.-+-|.|||..+..++..+...
T Consensus 23 ~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 23 HVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 33444444434432 3 4789999999999999999888643
No 358
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=67.02 E-value=23 Score=43.36 Aligned_cols=46 Identities=22% Similarity=0.180 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHhh-h--cCCcEEEEecCCCCcHHHHHHHHHHHHhCC
Q 000500 287 HPYQLEGLNFLRFSW-S--KQTHVILADEMGLGKTIQSIAFLASLFGER 332 (1460)
Q Consensus 287 rpyQlegvnwL~~~~-~--~~~~~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1460)
|+-|++-+.-....+ . ...+++|.-..|+|||..+-.++..+....
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 566666654333222 2 335689999999999999988888776543
No 359
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=66.54 E-value=28 Score=43.53 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=27.2
Q ss_pred CcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEc
Q 000500 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1460)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP 341 (1460)
...+++-..|.|||.++..++.++...+..+.||-+.
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4467889999999999999888887665434444443
No 360
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.32 E-value=25 Score=45.85 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhhcCC---cEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
|...+..|...+..++ ..|+.-.-|.|||..|..|+..+...
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5566666666665542 35789999999999999999888653
No 361
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=66.27 E-value=21 Score=44.81 Aligned_cols=35 Identities=26% Similarity=0.150 Sum_probs=25.8
Q ss_pred CcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEE
Q 000500 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1460)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVv 340 (1460)
...+|.-+.|+|||-.+-++...+...+ .+++.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~-~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESG-GKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcC-CCEEEee
Confidence 4578999999999998888888776543 2444444
No 362
>PRK10865 protein disaggregation chaperone; Provisional
Probab=65.73 E-value=21 Score=48.50 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=27.8
Q ss_pred HHHHHHhh--hcCCcEEEEecCCCCcHHHHHHHHHHHHh
Q 000500 294 LNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1460)
Q Consensus 294 vnwL~~~~--~~~~~~ILADemGLGKTiqaIa~l~~L~~ 330 (1460)
+..++..+ ....+.||.-+.|.|||..+-+++..+..
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 55555433 34568999999999999999888877654
No 363
>CHL00095 clpC Clp protease ATP binding subunit
Probab=65.69 E-value=2.3e+02 Score=38.71 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=21.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
.++.-++|.|||..|-++...++..
T Consensus 542 ~lf~Gp~GvGKt~lA~~LA~~l~~~ 566 (821)
T CHL00095 542 FLFSGPTGVGKTELTKALASYFFGS 566 (821)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Confidence 5789999999999999998887654
No 364
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=65.66 E-value=7.6 Score=51.82 Aligned_cols=112 Identities=19% Similarity=0.245 Sum_probs=71.3
Q ss_pred hhcCCcEEEEecCCCCcHHHHHHHHHHHHhC-CCCcEEEEEcc-ccH----HHHHHHHHHHCCCCeEEEEEcChhHHHHH
Q 000500 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPL-STL----RNWEREFATWAPQMNVVMYVGTSQARNII 374 (1460)
Q Consensus 301 ~~~~~~~ILADemGLGKTiqaIa~l~~L~~~-~~~p~LIVvP~-sll----~qW~~E~~kw~P~l~vvvy~G~~~~r~~i 374 (1460)
++...+.++.+.+|.|||+.+-..+.+.... ..+.+.+|+|. .++ ..|..-+. .|+++++-..|....-
T Consensus 940 y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~--~~g~k~ie~tgd~~pd--- 1014 (1230)
T KOG0952|consen 940 YHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDE--LPGIKVIELTGDVTPD--- 1014 (1230)
T ss_pred eecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcc--cCCceeEeccCccCCC---
Confidence 3456678899999999999885544444444 44599999995 333 44765443 2466666666543211
Q ss_pred HHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCC----cceEEEeccccccCCc
Q 000500 375 REYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI----KWQCMIVDEGHRLKNK 443 (1460)
Q Consensus 375 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i----~w~~VIvDEAHrlKN~ 443 (1460)
.......+++|||++............ ....+|+||.|.++..
T Consensus 1015 --------------------------~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1015 --------------------------VKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred --------------------------hhheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 112345689999999875443322222 2457999999988654
No 365
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=65.63 E-value=13 Score=37.38 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=24.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccH
Q 000500 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll 345 (1460)
.+|.-+.|.|||..+-.++..+. .+++.+....+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~----~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG----FPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT----SEEEEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcc----cccccccccccc
Confidence 36778999999998888777751 255666555544
No 366
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=65.47 E-value=32 Score=41.32 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHhhhcCC---cEEEEecCCCCcHHHHHHHHHHHHhCC
Q 000500 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1460)
.++|+|...-..|...+..++ .-++....|+||+..|..|+.++....
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 478899888887877766554 467899999999999999999987653
No 367
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=65.22 E-value=32 Score=45.62 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=69.7
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHH----HHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEE
Q 000500 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLD----LLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1460)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~Ld----iLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfL 681 (1460)
.|||.....-.+-.....|.+++|.+....... .+..++...|+++..++|+++..+|..++.....+... ++
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~---Iv 368 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEAD---IV 368 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCC---EE
Confidence 578876544444344457889999998766544 55556666689999999999999999999988764433 66
Q ss_pred eeccc-cccccCccCCCEEEEecCC
Q 000500 682 LSTRA-GGLGINLATADTVIIYDSD 705 (1460)
Q Consensus 682 lSTrA-gg~GINL~~Ad~VIi~Dsd 705 (1460)
+.|.+ ....+.+.....||+=+-+
T Consensus 369 VgT~~ll~~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVIIDEQH 393 (681)
T ss_pred EchHHHhcccchhcccceEEEechh
Confidence 67765 4556778888888775543
No 368
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=65.07 E-value=20 Score=43.78 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=18.7
Q ss_pred cCCcEEEEecCCCCcHHHHHHHHHH
Q 000500 303 KQTHVILADEMGLGKTIQSIAFLAS 327 (1460)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~ 327 (1460)
.-.+.||.-..|.|||..|-.+..+
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999776554443
No 369
>PRK13342 recombination factor protein RarA; Reviewed
Probab=64.63 E-value=27 Score=43.39 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=19.1
Q ss_pred CcEEEEecCCCCcHHHHHHHHHHH
Q 000500 305 THVILADEMGLGKTIQSIAFLASL 328 (1460)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~L 328 (1460)
.+.||.-+.|+|||..+-.+...+
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999998877765543
No 370
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=63.79 E-value=50 Score=38.72 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=30.0
Q ss_pred cCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEc-c---ccHHHHHH
Q 000500 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-L---STLRNWER 350 (1460)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP-~---sll~qW~~ 350 (1460)
.+....|.-..|.|||..+..++..+...+ ..+.+|.- . ..+.||..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~-~~v~~i~~D~~ri~~~~ql~~ 124 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK-KTVGFITTDHSRIGTVQQLQD 124 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHH
Confidence 345667888899999998777776665433 34544444 2 35566654
No 371
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.69 E-value=4.2 Score=48.59 Aligned_cols=44 Identities=27% Similarity=0.640 Sum_probs=35.3
Q ss_pred ccccccCCC---CCeeecCCCCCcccccccCCCCCCCCCCCCCCCccCCC
Q 000500 52 DSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1460)
Q Consensus 52 ~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 98 (1460)
+.|.+|-+. |+.|+-=-|...||..|.+|-|... .=+||-|+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCc
Confidence 689999874 6766667899999999999987763 2369999873
No 372
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=63.23 E-value=16 Score=32.44 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=35.7
Q ss_pred CCChHHHHHHHHHHHhcCCCCcc-hhhhchhhc-CC-CHHHHHHHHHHHHH
Q 000500 968 GFSQNQRAAFVQILMRFGVGDFD-WKEFTPRLK-QK-SYEEIREYGILFLT 1015 (1460)
Q Consensus 968 GF~~w~Rr~Fv~a~~KyG~~~~~-~~~ia~el~-~K-s~eEvk~Ya~lF~~ 1015 (1460)
.+|+-+.+.|+.++..||.+++. -..|+.-+. .. |..+|+..+..+..
T Consensus 5 ~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 5 VWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 36777788999999999987631 156776664 34 99999988877653
No 373
>PLN03212 Transcription repressor MYB5; Provisional
Probab=63.09 E-value=7.4 Score=44.25 Aligned_cols=28 Identities=32% Similarity=0.704 Sum_probs=25.5
Q ss_pred CCccChHHHHHHHHHHHHhccchhHHhh
Q 000500 1081 GKFWKEEHDSLLLRAVLKHGYGRWQAIV 1108 (1460)
Q Consensus 1081 ~~~w~~eeD~~LL~gi~k~GyG~We~Ik 1108 (1460)
...||.|||-.|+..|.+||-++|..|-
T Consensus 25 Rg~WT~EEDe~L~~lV~kyG~~nW~~IA 52 (249)
T PLN03212 25 RGPWTVEEDEILVSFIKKEGEGRWRSLP 52 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 3579999999999999999999999884
No 374
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=63.08 E-value=18 Score=42.71 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=25.0
Q ss_pred cCCc-EEEEecCCCCcHHHHHHHHHHHHhCC
Q 000500 303 KQTH-VILADEMGLGKTIQSIAFLASLFGER 332 (1460)
Q Consensus 303 ~~~~-~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1460)
+... .+|....|.|||..|.+++..+....
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCC
Confidence 3455 78889999999999999999998653
No 375
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=62.01 E-value=65 Score=41.26 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=25.6
Q ss_pred cCCcEEEEecCCCCcHHHHHHHHHHHHhCCC-CcEEEEE
Q 000500 303 KQTHVILADEMGLGKTIQSIAFLASLFGERI-SPHLVVA 340 (1460)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~~~-~p~LIVv 340 (1460)
.++..+|.-..|.|||..+..++..+...+. ..+.+|.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 3455667788999999998877776654432 3455443
No 376
>PRK11823 DNA repair protein RadA; Provisional
Probab=61.16 E-value=23 Score=44.56 Aligned_cols=61 Identities=15% Similarity=0.099 Sum_probs=40.6
Q ss_pred HHHHHHH-hhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHH
Q 000500 293 GLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1460)
Q Consensus 293 gvnwL~~-~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k 354 (1460)
+++.+.. .+..+.-.+|.-++|.|||..++.++..+... ..++|.|.-.....+......+
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees~~qi~~ra~r 129 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEESASQIKLRAER 129 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccccHHHHHHHHHH
Confidence 4444432 23445567899999999999999988876533 2477888776666665544444
No 377
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=61.10 E-value=31 Score=41.65 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHhhhcCC---cEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
.++|||...-..|...+..++ .-+++-+.|+||+..|.+|+.++.-.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~ 51 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ 51 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 467888888877877766654 34689999999999999999998764
No 378
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=60.96 E-value=15 Score=46.65 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=38.1
Q ss_pred hcCCcEEEEecCCCCcHHHHHHHHHHHHhCC-----CCcEEEEEccccHHHHHHH
Q 000500 302 SKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAPLSTLRNWERE 351 (1460)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~~-----~~p~LIVvP~sll~qW~~E 351 (1460)
.+++-.|+.-..|+|||..|+-=+++|.... .+|+||+.|+-++......
T Consensus 224 ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~ 278 (747)
T COG3973 224 EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISR 278 (747)
T ss_pred cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHH
Confidence 3555567888999999999988788776543 2489999999888665443
No 379
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=60.63 E-value=5.5 Score=50.01 Aligned_cols=47 Identities=26% Similarity=0.481 Sum_probs=38.9
Q ss_pred cccccccccCCCCCeeecCCCCCcccccccCCCCCCCCCCCCCCCccCCC
Q 000500 49 AKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1460)
Q Consensus 49 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 98 (1460)
-+.++|.+|.++|.+++|+.|..++|-.|. ....|...|.|..|...
T Consensus 87 ~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~---~~~~~~c~~~~~d~~~~ 133 (463)
T KOG1081|consen 87 IEPSECFVCFKGGSLVTCKSRIQAPHRKCK---PAQLEKCSKRCTDCRAF 133 (463)
T ss_pred CCcchhccccCCCccceeccccccccccCc---CccCcccccCCcceeee
Confidence 357889999999999999999999999995 34567788888777643
No 380
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=60.54 E-value=47 Score=36.25 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=22.4
Q ss_pred cEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 306 ~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
..+|.-+.|.|||..+..++..+...
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 46789999999999999999888754
No 381
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=60.33 E-value=6.1 Score=44.17 Aligned_cols=39 Identities=26% Similarity=0.842 Sum_probs=30.3
Q ss_pred ccccccccCCCC--------CeeecCCCCCcccccccCCCCCCCCCCCCCCCccCC
Q 000500 50 KDDSCQACGESE--------NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1460)
Q Consensus 50 ~~~~C~~C~~~g--------~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~ 97 (1460)
..-+|.+|+.++ ....|..|...||..|... . .||.|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~----~-----~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK----K-----SCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC----C-----CCCCcHh
Confidence 456788898753 3789999999999999852 1 3999974
No 382
>PRK07952 DNA replication protein DnaC; Validated
Probab=60.28 E-value=28 Score=40.16 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHh---hhc-CCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHH
Q 000500 288 PYQLEGLNFLRFS---WSK-QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1460)
Q Consensus 288 pyQlegvnwL~~~---~~~-~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k 354 (1460)
+.|..++..+... +.. ..+.+|.-..|+|||..+.+++.++...+. +++++ .+..|...+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~-~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGK-SVLII----TVADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCC-eEEEE----EHHHHHHHHHH
Confidence 4466666554322 222 246789999999999999999999876542 45554 35666666653
No 383
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=59.69 E-value=6.9 Score=44.08 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=24.4
Q ss_pred cCCcEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
+-.+.|++-..|.|||..+.+++..|+..
T Consensus 47 nmP~liisGpPG~GKTTsi~~LAr~LLG~ 75 (333)
T KOG0991|consen 47 NMPNLIISGPPGTGKTTSILCLARELLGD 75 (333)
T ss_pred CCCceEeeCCCCCchhhHHHHHHHHHhCh
Confidence 44578999999999999999998887653
No 384
>PLN03091 hypothetical protein; Provisional
Probab=59.51 E-value=9 Score=46.83 Aligned_cols=29 Identities=34% Similarity=0.704 Sum_probs=26.1
Q ss_pred CCccChHHHHHHHHHHHHhccchhHHhhh
Q 000500 1081 GKFWKEEHDSLLLRAVLKHGYGRWQAIVD 1109 (1460)
Q Consensus 1081 ~~~w~~eeD~~LL~gi~k~GyG~We~Ik~ 1109 (1460)
...|+.|||..|+..|.+||-++|..|-.
T Consensus 14 Kg~WTpEEDe~L~~~V~kyG~~nWs~IAk 42 (459)
T PLN03091 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPK 42 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHhh
Confidence 35799999999999999999999998853
No 385
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=59.08 E-value=17 Score=37.99 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHh----cCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeecc
Q 000500 610 LQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1460)
Q Consensus 610 l~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~----~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTr 685 (1460)
..++.+|+.+....|+||+|+|.....+..|.+.|=. .-++..+...... ...- ++|++.
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~~---------------~~~P-V~i~~~ 78 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEPPA---------------ARQP-VLITWD 78 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-SST---------------T--S-EEEE-T
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCCCC---------------CCCe-EEEecC
Confidence 5888999999999999999999999999999999932 2334444222211 1111 455554
Q ss_pred ccccccCccCCCEEEEecCCC
Q 000500 686 AGGLGINLATADTVIIYDSDW 706 (1460)
Q Consensus 686 Agg~GINL~~Ad~VIi~DsdW 706 (1460)
... .....++++|++++.+
T Consensus 79 ~~~--~~~~~~~vLinL~~~~ 97 (137)
T PF04364_consen 79 QEA--NPNNHADVLINLSGEV 97 (137)
T ss_dssp TS------S--SEEEE--SS-
T ss_pred ccc--CCCCCCCEEEECCCCC
Confidence 422 2334599999999887
No 386
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=58.99 E-value=54 Score=35.17 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=25.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEc
Q 000500 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP 341 (1460)
.++.-..|.|||..+..++..+...+....+|-++
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 46778999999999999888877664323344444
No 387
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=58.75 E-value=39 Score=42.54 Aligned_cols=42 Identities=19% Similarity=0.146 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhhcCC---cEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
|...+.+|......+. ..|+.-+.|.|||..|.+++..+...
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 4456666666555543 35789999999999999999988654
No 388
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=58.60 E-value=40 Score=45.11 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=24.1
Q ss_pred cCCcEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
...+.||.-+.|.|||..+-+++..+...
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~ 230 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEG 230 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 45689999999999999988888777554
No 389
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=58.52 E-value=13 Score=40.53 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=37.0
Q ss_pred hcccCCCcceEEEeccccccCCcc----hHHHHHHHhccccceEeeccccccCCHHHHHHHHH
Q 000500 421 SASLKPIKWQCMIVDEGHRLKNKD----SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH 479 (1460)
Q Consensus 421 ~~~L~~i~w~~VIvDEAHrlKN~~----Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~ 479 (1460)
...+..-.|++||+||.=..-+.. ..+...|..-+...-|.|||.-....+.|+..++.
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~VT 152 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLVT 152 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCceee
Confidence 445556689999999986543322 34555555555556799999855544444444433
No 390
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=58.47 E-value=93 Score=34.61 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=38.8
Q ss_pred hcccCCCcceEEEeccccccCCc----chHHHHHHHhccccceEeeccccccCCHHHHHHHHHhhc
Q 000500 421 SASLKPIKWQCMIVDEGHRLKNK----DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLD 482 (1460)
Q Consensus 421 ~~~L~~i~w~~VIvDEAHrlKN~----~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL~fL~ 482 (1460)
...+..-.|++||+||.=..-+. ...+...|..-+..--|.|||--....+.|+..++.-+.
T Consensus 108 ~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlVTEm~ 173 (191)
T PRK05986 108 KRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLVTEMR 173 (191)
T ss_pred HHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchheecc
Confidence 44556678999999998655442 234455555545556799999855555555554444433
No 391
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=58.19 E-value=15 Score=36.71 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=45.1
Q ss_pred HhHHHHHHHHHhhhcchhhhhhhcCCcchhhHHHHhhhHHHHHHHHHHhh
Q 000500 1282 LAQHYNEMCKVLEENVHEVVKTSLTSQPASAQLRTNLQLLETLCEDVNQI 1331 (1460)
Q Consensus 1282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1331 (1460)
|-..|++|..+++.=..++.|.--||+.|+.++|+....||-|..|++..
T Consensus 2 lKdt~~kmkeL~e~~~~D~~K~EKGNKAAGtRaRK~sleLeKLaKefRKe 51 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAEKAEKGNKAAGTRARKASLELEKLAKEFRKE 51 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999988877799999999999999999999999873
No 392
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=58.07 E-value=24 Score=38.11 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=38.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHH
Q 000500 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~kw 355 (1460)
.+|+-+.|+|||..++.++......+ .+++++.......+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g-~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG-EPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC-CcEEEEECCCCHHHHHHHHHHc
Confidence 47888999999999999988876543 4889998877777776666654
No 393
>CHL00095 clpC Clp protease ATP binding subunit
Probab=57.90 E-value=33 Score=46.49 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=23.8
Q ss_pred cCCcEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
...+.||.-+.|.|||..+-+++..+...
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i~~~ 227 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIVNR 227 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHHHhC
Confidence 45688999999999999998887776543
No 394
>PTZ00293 thymidine kinase; Provisional
Probab=57.76 E-value=50 Score=37.25 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=24.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc
Q 000500 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~ 342 (1460)
-++.-.||+|||...|-.+...... ..+++++-|.
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~~a-g~kv~~~kp~ 41 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFTYS-EKKCVVIKYS 41 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHHHc-CCceEEEEec
Confidence 3567899999998776665544332 3478888884
No 395
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=57.14 E-value=21 Score=42.91 Aligned_cols=47 Identities=17% Similarity=0.271 Sum_probs=34.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHh
Q 000500 281 LSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1460)
Q Consensus 281 ~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~ 330 (1460)
+..+.+.+.|.+-+ ..+...+.+.|++-.+|+|||...-+++..+..
T Consensus 124 v~~g~~~~~~~~~L---~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 124 VTSKIMTEAQASVI---RSAIDSRLNIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHcCCCCHHHHHHH---HHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34466777776554 444567888999999999999888777776643
No 396
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=56.57 E-value=52 Score=40.95 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=18.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHH
Q 000500 307 VILADEMGLGKTIQSIAFLASL 328 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L 328 (1460)
.++.-..|.|||.++.-++..+
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5578899999999998888755
No 397
>PRK14873 primosome assembly protein PriA; Provisional
Probab=56.55 E-value=45 Score=44.02 Aligned_cols=94 Identities=18% Similarity=0.115 Sum_probs=72.2
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhc-C-CeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEee
Q 000500 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-K-WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS 683 (1460)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~-g-~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlS 683 (1460)
.|||......++......|+.+||...-+.....+...|..+ | ..+..+++..+..+|.+...+...+. ..++|.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~---~~IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQ---ARVVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCC---CcEEEE
Confidence 689999999999999999999999999998888888888654 3 67999999999999998888776533 347888
Q ss_pred ccccccccCccCCCEEEEec
Q 000500 684 TRAGGLGINLATADTVIIYD 703 (1460)
Q Consensus 684 TrAgg~GINL~~Ad~VIi~D 703 (1460)
||++-. .=+..-..||+.|
T Consensus 247 tRSAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 247 TRSAVF-APVEDLGLVAIWD 265 (665)
T ss_pred cceeEE-eccCCCCEEEEEc
Confidence 887531 1223334455543
No 398
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=56.42 E-value=66 Score=34.70 Aligned_cols=58 Identities=19% Similarity=0.179 Sum_probs=36.5
Q ss_pred hcccCCCcceEEEeccccccCCc----chHHHHHHHhccccceEeeccccccCCHHHHHHHH
Q 000500 421 SASLKPIKWQCMIVDEGHRLKNK----DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLM 478 (1460)
Q Consensus 421 ~~~L~~i~w~~VIvDEAHrlKN~----~Sk~~~al~~l~~~~rLLLTGTPlqNnl~EL~sLL 478 (1460)
...+..-.+++||+||.=..-+. ...+...+..-....-++|||--.+..+.|+..++
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~V 149 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLV 149 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCcee
Confidence 34455668999999998665332 23455555555555679999976555555444433
No 399
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=56.41 E-value=37 Score=46.31 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=28.2
Q ss_pred HHHHHHHhhh--cCCcEEEEecCCCCcHHHHHHHHHHHHh
Q 000500 293 GLNFLRFSWS--KQTHVILADEMGLGKTIQSIAFLASLFG 330 (1460)
Q Consensus 293 gvnwL~~~~~--~~~~~ILADemGLGKTiqaIa~l~~L~~ 330 (1460)
-+..+...+. ...+.||.-+.|.|||..+-+++..+..
T Consensus 181 ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 181 EIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4566655433 3568899999999999998888777654
No 400
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=56.28 E-value=49 Score=43.50 Aligned_cols=97 Identities=18% Similarity=0.224 Sum_probs=67.4
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHH----HHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEE
Q 000500 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDL----LEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1460)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~Ldi----Led~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfL 681 (1460)
.|||..+..-.+......|.+++|.+.......- +..++...|+++..++|+++..+|..++.....+... ++
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~---Ii 342 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIH---LV 342 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCC---EE
Confidence 5778765443333344568899999988765544 4445555689999999999999999999888764433 56
Q ss_pred eecccc-ccccCccCCCEEEEecCC
Q 000500 682 LSTRAG-GLGINLATADTVIIYDSD 705 (1460)
Q Consensus 682 lSTrAg-g~GINL~~Ad~VIi~Dsd 705 (1460)
++|.+. -..+.+.....||+=+-+
T Consensus 343 VgT~~ll~~~~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVIIDEQH 367 (630)
T ss_pred EecHHHHhccccccccceEEEechh
Confidence 666653 445677777777775543
No 401
>PRK06835 DNA replication protein DnaC; Validated
Probab=55.89 E-value=25 Score=42.43 Aligned_cols=49 Identities=16% Similarity=0.058 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHH----hhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCC
Q 000500 284 GSLHPYQLEGLNFLRF----SWSKQTHVILADEMGLGKTIQSIAFLASLFGER 332 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~----~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1460)
+..+.++..++.++.. .-..+.+.+|.-++|+|||..+.+++..+...+
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g 211 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRG 211 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 4566666666654322 212457788999999999999999999887664
No 402
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=55.56 E-value=44 Score=44.55 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=19.0
Q ss_pred CcEEEEecCCCCcHHHHHHHHHH
Q 000500 305 THVILADEMGLGKTIQSIAFLAS 327 (1460)
Q Consensus 305 ~~~ILADemGLGKTiqaIa~l~~ 327 (1460)
.+.||.-+.|+|||..+-++...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999887766654
No 403
>PRK10865 protein disaggregation chaperone; Provisional
Probab=54.95 E-value=6.2e+02 Score=34.79 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=21.6
Q ss_pred cEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 306 ~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
..+|.-++|.|||..|-++...++..
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~ 625 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDS 625 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcC
Confidence 46789999999999998888777643
No 404
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=54.81 E-value=62 Score=38.94 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhhcCC---cEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 291 LEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 291 legvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
...++.|......+. ..+|.-+.|+|||..+..++..+...
T Consensus 20 ~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 20 EHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 334444444344433 35789999999999999988887643
No 405
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=54.24 E-value=34 Score=44.56 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=66.7
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCC-----CCcEEEEEc-cccHHHHHHHHHHHCC
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAP-LSTLRNWEREFATWAP 357 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~-----~~p~LIVvP-~sll~qW~~E~~kw~P 357 (1460)
..|..-|+.+...+ ....-.|+.-..|+|||.+++-++..|+... .-|+||||= ++.+.|...-+...
T Consensus 377 ~ildsSq~~A~qs~----ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~~-- 450 (1025)
T KOG1807|consen 377 VILDSSQQFAKQSK----LTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYYH-- 450 (1025)
T ss_pred eeecHHHHHHHHHH----hhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHhc--
Confidence 34777899988765 3455678999999999999998888887653 239999998 58888876665542
Q ss_pred CCeEEEEEcChhHHHHHHHhhhc
Q 000500 358 QMNVVMYVGTSQARNIIREYEFY 380 (1460)
Q Consensus 358 ~l~vvvy~G~~~~r~~i~~~e~~ 380 (1460)
+-..++..|+......++.+.+.
T Consensus 451 qrpsImr~gsr~~spyLk~~n~~ 473 (1025)
T KOG1807|consen 451 QRPSIMRQGSRFFSPYLKVHNYL 473 (1025)
T ss_pred CCceEEEeccccCCHHHHHHHHH
Confidence 44567777877766666665544
No 406
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=54.06 E-value=1.4 Score=40.76 Aligned_cols=46 Identities=24% Similarity=0.452 Sum_probs=18.6
Q ss_pred ccccccCCC----CC--eeecC--CCCCcccccccCCCCCCCC-------CCCCCCCccCC
Q 000500 52 DSCQACGES----EN--LMSCD--TCTYAYHAKCLVPPLKAPP-------SGSWRCPECVS 97 (1460)
Q Consensus 52 ~~C~~C~~~----g~--ll~Cd--~C~~~~H~~Cl~P~l~~~p-------~~~W~C~~C~~ 97 (1460)
..|.+|... +. .+.|+ .|...||..||---+...+ .-.+.||.|..
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~ 63 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSS 63 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-S
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCC
Confidence 458888753 22 57898 9999999999954433211 12256999975
No 407
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=53.95 E-value=56 Score=33.75 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=25.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc
Q 000500 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~ 342 (1460)
.+|.-..|.|||..+..++..+... .++++++...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK-GGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECC
Confidence 3567789999999998888877553 3466666554
No 408
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=53.87 E-value=66 Score=40.97 Aligned_cols=59 Identities=22% Similarity=0.167 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCc------EEEEecCCCCcHHHHHHHHHHH--HhCCC-CcEEEEEcc
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTH------VILADEMGLGKTIQSIAFLASL--FGERI-SPHLVVAPL 342 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~------~ILADemGLGKTiqaIa~l~~L--~~~~~-~p~LIVvP~ 342 (1460)
..|.|||...+.-|.-.+.++.+ +++...=|-|||..+.+++.+. +.... ..++|++|.
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s 127 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPS 127 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEecc
Confidence 57999999998877434444433 4788899999998776555543 33333 388888885
No 409
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=53.43 E-value=9.9 Score=43.60 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=37.4
Q ss_pred ccChHHHHHHHHHHHHhccchhHHhhhCcccchHHHHHHhhcCCCCCCCCC
Q 000500 1083 FWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPVP 1133 (1460)
Q Consensus 1083 ~w~~eeD~~LL~gi~k~GyG~We~Ik~D~~l~l~~~i~~e~~~~~~~~~~~ 1133 (1460)
.|+.|||..|..-|-+||-|+|-.|-.+-.|+=.-|=| +++..|-+-|
T Consensus 11 pWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSC---RlRW~NyLrP 58 (238)
T KOG0048|consen 11 PWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSC---RLRWTNYLRP 58 (238)
T ss_pred CCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHH---HHHhhcccCC
Confidence 79999999999999999999999888887653333444 4566665555
No 410
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=53.09 E-value=3.8e+02 Score=35.97 Aligned_cols=55 Identities=24% Similarity=0.313 Sum_probs=37.7
Q ss_pred CEEEEecCCCChhhHHHHHHhhcccCCC---CceEEEEEecCCCHHHHH--HHHHHHHHHHHHHHh
Q 000500 697 DTVIIYDSDWNPHADLQAMARAHRLGQT---NKVMIFRLITRGSIEERM--MQMTKKKMVLEHLVV 757 (1460)
Q Consensus 697 d~VIi~DsdWNP~~d~QAigRahRiGQ~---k~V~VyrLvt~~TiEE~I--~e~a~~K~~L~~~Vi 757 (1460)
..||+|+++-++-. ++-+++-. +..+||.++..+|+||.= ..+.+.|+.+.+++-
T Consensus 546 ~yvi~y~~~~~~vR------qiEvYka~~p~~~lkVYfl~y~~S~EeQ~yltSirREk~sFe~LIr 605 (892)
T KOG0442|consen 546 RYVIMYESDLTFVR------QIEVYKATRPFRSLKVYFLYYGESTEEQRYLTSIRREKASFEKLIR 605 (892)
T ss_pred ceEEEEcCCCCcee------eeeeeeccCCCCCceEEEEEecCchHHHHHHHHHHHhHHHHHHHHh
Confidence 45899999866543 33333333 456799999999998853 456667777777764
No 411
>PRK10867 signal recognition particle protein; Provisional
Probab=53.01 E-value=66 Score=40.30 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=26.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhC-CCCcEEEEEc
Q 000500 307 VILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP 341 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~-~~~p~LIVvP 341 (1460)
.++.-..|.|||.++.-++.++... +....||-+-
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 5678899999999999999888776 4334444444
No 412
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=52.81 E-value=25 Score=45.31 Aligned_cols=43 Identities=16% Similarity=0.033 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHH
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA 326 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~ 326 (1460)
.++++.|++-.+-|+..+..|+=||+-..+|+|||+..|....
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaal 56 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAAL 56 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHH
Confidence 6789999999999999999999999999999999998665443
No 413
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=51.87 E-value=29 Score=44.18 Aligned_cols=29 Identities=31% Similarity=0.282 Sum_probs=23.7
Q ss_pred hcCCcEEEEecCCCCcHHHHHHHHHHHHh
Q 000500 302 SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1460)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~ 330 (1460)
...++.+|.-+.|.|||..+-+++..+..
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 34567899999999999998888877643
No 414
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=51.65 E-value=4.5 Score=45.84 Aligned_cols=59 Identities=31% Similarity=0.613 Sum_probs=39.2
Q ss_pred ccccccccCCC----------CCeeecCCCCCcccccccCCCC---CCCCCCCCCCCccCCC-----CCcccccccc
Q 000500 50 KDDSCQACGES----------ENLMSCDTCTYAYHAKCLVPPL---KAPPSGSWRCPECVSP-----LNDIDKILDC 108 (1460)
Q Consensus 50 ~~~~C~~C~~~----------g~ll~Cd~C~~~~H~~Cl~P~l---~~~p~~~W~C~~C~~~-----~~diekiL~~ 108 (1460)
...+|--|-.+ .+|+.|..|+|+=|..||.-.. ..+-.-.|.|-+|..= ...-|.+|.|
T Consensus 223 Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtsenddqllfc 299 (336)
T KOG1244|consen 223 PNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSENDDQLLFC 299 (336)
T ss_pred CCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCCCceeEee
Confidence 34567777543 3499999999999999994321 1233567999999741 1122667766
No 415
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=51.59 E-value=35 Score=39.63 Aligned_cols=49 Identities=14% Similarity=0.009 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEE
Q 000500 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1460)
Q Consensus 288 pyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVv 340 (1460)
|+...-+..+......+...+|..+.|+|||..|-++...+ ..|++.++
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l----g~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR----DRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh----CCCEEEEe
Confidence 44455555555666788899999999999999988777643 23777664
No 416
>CHL00206 ycf2 Ycf2; Provisional
Probab=51.52 E-value=38 Score=48.94 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=32.2
Q ss_pred hcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHH
Q 000500 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1460)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW 348 (1460)
...+|++|.-.+|+|||+.|=|++... .-|++-|.....+..|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es----~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS----YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc----CCceEEEEHHHHhhcc
Confidence 445678899999999999877766542 2388877777777666
No 417
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=51.46 E-value=60 Score=40.58 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=26.0
Q ss_pred cEEEEecCCCCcHHHHHHHHHHHHh-CCCCcEEEEEc
Q 000500 306 HVILADEMGLGKTIQSIAFLASLFG-ERISPHLVVAP 341 (1460)
Q Consensus 306 ~~ILADemGLGKTiqaIa~l~~L~~-~~~~p~LIVvP 341 (1460)
-.+++-..|.|||.++.-++.++.. .+....||-|-
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 4678999999999999999988763 44334444444
No 418
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=51.06 E-value=32 Score=46.06 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=23.3
Q ss_pred cCCcEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
...+.||.-+.|.|||..+-++...+...
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~ 234 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46788999999999999987777665443
No 419
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=50.72 E-value=81 Score=37.98 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHhhhcCCc-EEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 286 LHPYQLEGLNFLRFSWSKQTH-VILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~-~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
++|+|...-.-+...+.+-.+ .++.-..|+|||..|..++..+.-.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 468887776556554444344 4689999999999999999988743
No 420
>PRK05973 replicative DNA helicase; Provisional
Probab=50.56 E-value=37 Score=38.95 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=39.0
Q ss_pred HhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHH
Q 000500 299 FSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1460)
Q Consensus 299 ~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k 354 (1460)
..+..+.-.+|+-..|.|||+-++.|+...... ..+++++.-...-.+-.+.+..
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes~~~i~~R~~s 113 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYTEQDVRDRLRA 113 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCCHHHHHHHHHH
Confidence 344667778999999999999999998877544 2478888765544444444443
No 421
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=50.32 E-value=26 Score=46.33 Aligned_cols=64 Identities=20% Similarity=0.189 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhC-CCC--cEEEEEcc-ccHHHHHHHHHH
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RIS--PHLVVAPL-STLRNWEREFAT 354 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~-~~~--p~LIVvP~-sll~qW~~E~~k 354 (1460)
.|.|-|.++|.+ ..+.+++....|+|||.+.+.-+.+|... +.. .+|+|+.+ ..-..-..-+.+
T Consensus 2 ~Ln~~Q~~av~~------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~ 69 (672)
T PRK10919 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQ 69 (672)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHH
Confidence 478999999863 34667777789999999999999998864 433 67888874 333333333433
No 422
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=49.99 E-value=98 Score=39.27 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=29.1
Q ss_pred hhhcccCCCcceEEEeccccccCCcchHHHHHHHhcc---ccceEeecccc
Q 000500 419 LDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYS---TRHRVLLTGTP 466 (1460)
Q Consensus 419 ~d~~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l~---~~~rLLLTGTP 466 (1460)
.+...+......++|+||+|.+++. .++.++..-. .+..++...|+
T Consensus 114 ~~~~~~dG~~~~~~i~DE~h~~~~~--~~~~~l~~g~~~r~~pl~~~ISTa 162 (477)
T PF03354_consen 114 SDADSLDGLNPSLAIFDELHAHKDD--ELYDALESGMGARPNPLIIIISTA 162 (477)
T ss_pred cCCCCccCCCCceEEEeCCCCCCCH--HHHHHHHhhhccCCCceEEEEeCC
Confidence 3455666778899999999999863 3555554432 23344544554
No 423
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=49.92 E-value=1.7e+02 Score=36.32 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=40.4
Q ss_pred ecHHHHHhhhcccCCCcceEEEeccccccCCcchHHHHHHHhc-----cccceEeeccccccCCHHHHHHHHHhhcCCC
Q 000500 412 TSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQY-----STRHRVLLTGTPLQNNLDELFMLMHFLDAGK 485 (1460)
Q Consensus 412 tSYe~l~~d~~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l-----~~~~rLLLTGTPlqNnl~EL~sLL~fL~p~~ 485 (1460)
.+..-+......+.. .++|.||=+-|---... ....|..+ ....-|.||+|-=...+.+++..+..+...-
T Consensus 267 ~~~~el~~ai~~l~~--~d~ILVDTaGrs~~D~~-~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~ 342 (407)
T COG1419 267 YSPKELAEAIEALRD--CDVILVDTAGRSQYDKE-KIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDG 342 (407)
T ss_pred cCHHHHHHHHHHhhc--CCEEEEeCCCCCccCHH-HHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcce
Confidence 333334333444433 37888996644221111 22222222 2345688999988888888888887776543
No 424
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.66 E-value=1.3e+02 Score=39.45 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhhcCC--c-EEEEecCCCCcHHHHHHHHHHHHh
Q 000500 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~--~-~ILADemGLGKTiqaIa~l~~L~~ 330 (1460)
|...+..|...+.++. + .|+.-+.|.|||..+..++..+..
T Consensus 22 q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c 65 (614)
T PRK14971 22 QEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 (614)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3333444444444432 3 579999999999988888887753
No 425
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=49.65 E-value=57 Score=36.29 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=23.4
Q ss_pred ceEEEeccccccCCcchHHHHHHHhccc--cceEeeccc
Q 000500 429 WQCMIVDEGHRLKNKDSKLFSSLKQYST--RHRVLLTGT 465 (1460)
Q Consensus 429 w~~VIvDEAHrlKN~~Sk~~~al~~l~~--~~rLLLTGT 465 (1460)
.++|+|||||-+.. .+...|..+.. ..++++.|.
T Consensus 83 ~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 83 VDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred cCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEecc
Confidence 68999999998854 45555666644 456666663
No 426
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=49.63 E-value=1.1e+02 Score=38.20 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=25.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEc
Q 000500 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP 341 (1460)
..|+--.|.|||.++..++.++...+. ++++|+-
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G~-kV~lV~~ 136 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKGF-KPCLVCA 136 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEcC
Confidence 457788999999999888888766554 4444443
No 427
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=48.98 E-value=59 Score=43.01 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhC-CCC--cEEEEEc-cccHHHHHHHHHHHC
Q 000500 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RIS--PHLVVAP-LSTLRNWEREFATWA 356 (1460)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~-~~~--p~LIVvP-~sll~qW~~E~~kw~ 356 (1460)
|.|-|.++|++ ..+.+++-...|+|||.+.+.-+.++... +.. .+|+|+. .....+-.+.+.+..
T Consensus 2 Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 77899998863 35677888899999999999999998864 433 5677765 555666666676654
No 428
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=48.75 E-value=8.5 Score=36.90 Aligned_cols=31 Identities=19% Similarity=0.685 Sum_probs=26.4
Q ss_pred cccccccccCCC-CCeeecC--CCCCcccccccC
Q 000500 49 AKDDSCQACGES-ENLMSCD--TCTYAYHAKCLV 79 (1460)
Q Consensus 49 ~~~~~C~~C~~~-g~ll~Cd--~C~~~~H~~Cl~ 79 (1460)
.....|..|+.. |-.+.|. +|.+.||+.|..
T Consensus 34 ~~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 34 RRKLKCSICKKKGGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred HhCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHc
Confidence 345689999999 8899997 599999999974
No 429
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=48.22 E-value=4.8e+02 Score=32.26 Aligned_cols=55 Identities=20% Similarity=0.065 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHhhhc--CCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc
Q 000500 284 GSLHPYQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~--~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~ 342 (1460)
.-.|.+|+..+.-|...-.. ....+|.-..|+|||..+-.++..+ .-|+..|++.
T Consensus 8 v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~----n~~~vw~n~~ 64 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL----NLENVWLNCV 64 (438)
T ss_pred ccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc----CCcceeeehH
Confidence 34789999998766433222 1223889999999999888877765 2366777764
No 430
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=48.07 E-value=73 Score=34.86 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=23.7
Q ss_pred EEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc
Q 000500 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1460)
Q Consensus 308 ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~ 342 (1460)
++.-.|++|||...|..+..+...+ .++|++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~~-~~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIAG-KKVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHhCC-CeEEEEEec
Confidence 5567999999998887776654433 366666663
No 431
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=47.85 E-value=8.9 Score=38.29 Aligned_cols=30 Identities=30% Similarity=0.785 Sum_probs=25.5
Q ss_pred ccccccccCCC-CCeeecCC--CCCcccccccC
Q 000500 50 KDDSCQACGES-ENLMSCDT--CTYAYHAKCLV 79 (1460)
Q Consensus 50 ~~~~C~~C~~~-g~ll~Cd~--C~~~~H~~Cl~ 79 (1460)
....|.+|+.. |-.+.|.. |...||..|..
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHHH
Confidence 35679999984 77999987 99999999973
No 432
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=47.74 E-value=1.1e+02 Score=42.80 Aligned_cols=57 Identities=14% Similarity=-0.012 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sl 344 (1460)
..|.+-|.+++..+. ..++-++|.-.-|+|||.+.-++...+... ...++.++|..-
T Consensus 380 ~~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~-G~~V~g~ApTgk 436 (1102)
T PRK13826 380 ARLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAWEAA-GYRVVGGALAGK 436 (1102)
T ss_pred CCCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEcCcHH
Confidence 579999999998652 345567889999999998766655544333 247777888643
No 433
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=47.42 E-value=36 Score=40.47 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHh
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~ 330 (1460)
+.+-+.|. .+|......+++.+++-.+|+|||..+-+++..+..
T Consensus 115 g~~~~~~~---~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 115 GIMTAAQR---DVLREAVLARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCCCHHHH---HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 44444444 345555567889999999999999988777766644
No 434
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=47.04 E-value=8.6 Score=34.23 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=21.3
Q ss_pred cchhhhhhhccCCCCceEEEEEeccc
Q 000500 192 TTVDRILACRGEDDEKEYLVKYKELS 217 (1460)
Q Consensus 192 ~~veRII~~r~~~~~~eyLVKWkgL~ 217 (1460)
+.+|+||+.-...|+..|||||++.+
T Consensus 3 l~~E~Ivg~~d~~G~l~~likwk~~~ 28 (58)
T PF01393_consen 3 LEWEKIVGATDTNGELMFLIKWKNSG 28 (58)
T ss_dssp -TEEEEEEEEECTSSEEEEEEETTSS
T ss_pred CChHHHheeecCCCcEEEEEEECCCC
Confidence 45788888777778999999999976
No 435
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=46.91 E-value=30 Score=42.59 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=22.7
Q ss_pred hhcCCcEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 301 ~~~~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
.-.|.+++|...-|.|||..+-.+...+...
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 3567778888899999997776666555443
No 436
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=46.88 E-value=1.2e+02 Score=36.47 Aligned_cols=43 Identities=16% Similarity=0.402 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhhcCC---cEEEEecCCCCcHHHHHHHHHHHHhCC
Q 000500 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1460)
Q Consensus 290 QlegvnwL~~~~~~~~---~~ILADemGLGKTiqaIa~l~~L~~~~ 332 (1460)
|-+++..|......++ .-++.-+.|.||+..|.+|+..+....
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 5566666766666653 467899999999999999999987653
No 437
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=46.70 E-value=13 Score=43.32 Aligned_cols=27 Identities=22% Similarity=0.512 Sum_probs=19.2
Q ss_pred ceEEEeccccccCC-cchHHHHHHHhcc
Q 000500 429 WQCMIVDEGHRLKN-KDSKLFSSLKQYS 455 (1460)
Q Consensus 429 w~~VIvDEAHrlKN-~~Sk~~~al~~l~ 455 (1460)
-|+++|||.||+.- -.--+|-++..|.
T Consensus 104 ~DVLFIDEIHrl~~~vEE~LYpaMEDf~ 131 (332)
T COG2255 104 GDVLFIDEIHRLSPAVEEVLYPAMEDFR 131 (332)
T ss_pred CCeEEEehhhhcChhHHHHhhhhhhhee
Confidence 47899999999943 3445677776663
No 438
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=46.35 E-value=48 Score=44.30 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhC-CC--CcEEEEEcc-ccHHHHHHHHHHHCC
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPL-STLRNWEREFATWAP 357 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~-~~--~p~LIVvP~-sll~qW~~E~~kw~P 357 (1460)
.|.|-|.++|. ...+.+++....|+|||.+.+.-+.+|... +. ..+|+|+-+ .....-..-+.+..+
T Consensus 4 ~Ln~~Q~~av~------~~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 4 GLNDKQREAVA------APPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred ccCHHHHHHHc------CCCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 48899999986 345678888899999999999999999864 33 368888884 444555555555543
No 439
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=45.56 E-value=70 Score=39.03 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=34.6
Q ss_pred CCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHH
Q 000500 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1460)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~kw 355 (1460)
-+++++.-..|+|||+.|=|++... ...|.=|.-..+...|.-|=++.
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc----~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATEC----GTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhh----cCeEEEechhhhhhhhccchHHH
Confidence 3678999999999999887766543 12555555566778898876653
No 440
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=45.45 E-value=93 Score=39.53 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=22.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhC-CCCcEEEE
Q 000500 307 VILADEMGLGKTIQSIAFLASLFGE-RISPHLVV 339 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~-~~~p~LIV 339 (1460)
..|.-..|.|||.++.-++..+... +...+.+|
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI 292 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCVMRHGASKVALL 292 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 4577899999999988887766433 32244433
No 441
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=45.43 E-value=2.5 Score=35.04 Aligned_cols=40 Identities=30% Similarity=0.685 Sum_probs=26.5
Q ss_pred ccccccCCC---C-CeeecCCCCCcccccccCCCCCCCCCCCCCCCccC
Q 000500 52 DSCQACGES---E-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECV 96 (1460)
Q Consensus 52 ~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~ 96 (1460)
+.|.+|.+. + .++... |...||..|+..-+... -.||.|.
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC----CcCCccC
Confidence 358888763 2 355454 99999999997665442 2788883
No 442
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=45.35 E-value=51 Score=41.94 Aligned_cols=75 Identities=23% Similarity=0.419 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHhcCCCCcchhhhchhhcCCCHHHHH-HHHHHHHHhhhhccCCCCCccCCCCcCcchhhHHHHHHHH
Q 000500 969 FSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIR-EYGILFLTHITEDITDSPTFSDGVPKEGLRIQDVLVRIAV 1047 (1460)
Q Consensus 969 F~~w~Rr~Fv~a~~KyG~~~~~~~~ia~el~~Ks~eEvk-~Ya~lF~~~~~E~i~d~e~~~d~i~k~~~k~~~vl~Ri~~ 1047 (1460)
|++.+=...+.|+.+|| ..+|-.+-..+.+.|..+++ +|..++..+.+-
T Consensus 363 wt~~ED~~L~~AV~~Yg--~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~---------------------------- 412 (939)
T KOG0049|consen 363 WTDQEDVLLVCAVSRYG--AKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKV---------------------------- 412 (939)
T ss_pred CCCHHHHHHHHHHHHhC--ccchhhHHHhcCCccHHHHHHHHHHHHHHhhcc----------------------------
Q ss_pred HHHHHHHHHhccCCCCCCCccccccccccCCCCCCccChHHHHHHHHHHHHhccchhHHh
Q 000500 1048 LLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKHGYGRWQAI 1107 (1460)
Q Consensus 1048 ~~ll~~Kv~~~~~~p~~~~~~~~l~~~y~~~~~~~~w~~eeD~~LL~gi~k~GyG~We~I 1107 (1460)
..|+.-||-.||..|-+||-|+|-.|
T Consensus 413 ----------------------------------~rW~l~edeqL~~~V~~YG~g~Wakc 438 (939)
T KOG0049|consen 413 ----------------------------------ERWTLVEDEQLLYAVKVYGKGNWAKC 438 (939)
T ss_pred ----------------------------------CceeecchHHHHHHHHHHccchHHHH
No 443
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=45.16 E-value=58 Score=40.34 Aligned_cols=106 Identities=21% Similarity=0.231 Sum_probs=0.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCch
Q 000500 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPK 386 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~kw~P~l~vvvy~G~~~~r~~i~~~e~~~~~~~~ 386 (1460)
.+++-=.|.|||.++.=++.+|.. ....+|+|+--.--+--...++..+-...|-+|.......-.
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv------------- 168 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPV------------- 168 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHH-------------
Q ss_pred hhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEeccccccCCcchHHHHHHHhcc
Q 000500 387 KVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYS 455 (1460)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l~ 455 (1460)
+++..-...++.-.+++||||=|-|+.- +..+...+..++
T Consensus 169 ----------------------------~Iak~al~~ak~~~~DvvIvDTAGRl~i-de~Lm~El~~Ik 208 (451)
T COG0541 169 ----------------------------EIAKAALEKAKEEGYDVVIVDTAGRLHI-DEELMDELKEIK 208 (451)
T ss_pred ----------------------------HHHHHHHHHHHHcCCCEEEEeCCCcccc-cHHHHHHHHHHH
No 444
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=45.07 E-value=33 Score=39.75 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=28.5
Q ss_pred HHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 295 NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 295 nwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
.+|......+++.+++-++|+|||.+.-+++..+-..
T Consensus 118 ~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 118 EFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp HHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred HHHhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 4455555678889999999999999988877765444
No 445
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=44.42 E-value=87 Score=36.27 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=19.0
Q ss_pred hcCCcEEEEecCCCCcHHHHHHHHHH
Q 000500 302 SKQTHVILADEMGLGKTIQSIAFLAS 327 (1460)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~ 327 (1460)
..|..++|.-+.|.|||..+-.++..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~ 39 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANA 39 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 57788888889999999654443333
No 446
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=44.28 E-value=37 Score=45.34 Aligned_cols=52 Identities=23% Similarity=0.188 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhC-CCC--cEEEEEcc
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RIS--PHLVVAPL 342 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~-~~~--p~LIVvP~ 342 (1460)
.|.|-|.++|. ...+..++....|+|||.+.+.-+.+|... +.. .+|+|+-+
T Consensus 9 ~Ln~~Q~~av~------~~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT 63 (721)
T PRK11773 9 SLNDKQREAVA------APLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFT 63 (721)
T ss_pred hcCHHHHHHHh------CCCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeecc
Confidence 48999999986 334677777789999999999999998863 433 57888774
No 447
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=44.27 E-value=51 Score=41.59 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=38.3
Q ss_pred hcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHH
Q 000500 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1460)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k 354 (1460)
..+.-.+|+-++|.|||..++.++..+...+ +++|.|.......|......+
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g-~kvlYvs~EEs~~qi~~ra~r 143 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQ-MKVLYVSGEESLQQIKMRAIR 143 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcC-CcEEEEECcCCHHHHHHHHHH
Confidence 4455578999999999999999888776543 478888877666666544444
No 448
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=44.19 E-value=40 Score=40.47 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHH
Q 000500 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF 329 (1460)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~ 329 (1460)
.|.+.+.|.+.+ ......+.+.+++-.+|+|||...-+++..+.
T Consensus 130 ~g~~~~~~~~~L---~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~ 173 (319)
T PRK13894 130 RGIMTAAQREAI---IAAVRAHRNILVIGGTGSGKTTLVNAIINEMV 173 (319)
T ss_pred cCCCCHHHHHHH---HHHHHcCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 355666666544 44456788999999999999977766666553
No 449
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=43.92 E-value=76 Score=37.38 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=27.3
Q ss_pred CCcEEEEecCCCCcHHHHHHHHHHHHhC-CCCcEEEEEc
Q 000500 304 QTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP 341 (1460)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~-~~~p~LIVvP 341 (1460)
+...+|.-..|.|||.++..++.++... +..++.||.-
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 4456678899999999999888887654 3335555544
No 450
>PRK09087 hypothetical protein; Validated
Probab=43.92 E-value=54 Score=37.32 Aligned_cols=36 Identities=11% Similarity=0.188 Sum_probs=25.9
Q ss_pred eEEEeccccccCCcchHHHHHHHhccc-cceEeeccc
Q 000500 430 QCMIVDEGHRLKNKDSKLFSSLKQYST-RHRVLLTGT 465 (1460)
Q Consensus 430 ~~VIvDEAHrlKN~~Sk~~~al~~l~~-~~rLLLTGT 465 (1460)
++|+||+.|.+......++..+..+.. ...+++|++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~ 125 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSR 125 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECC
Confidence 379999999886555667776665543 567888887
No 451
>CHL00176 ftsH cell division protein; Validated
Probab=43.87 E-value=87 Score=41.25 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.0
Q ss_pred CCcEEEEecCCCCcHHHHHHHHHH
Q 000500 304 QTHVILADEMGLGKTIQSIAFLAS 327 (1460)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~ 327 (1460)
..+.+|.-+.|+|||..|=+++..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999988777654
No 452
>PF12846 AAA_10: AAA-like domain
Probab=43.81 E-value=59 Score=37.63 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=31.9
Q ss_pred CCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHH
Q 000500 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWE 349 (1460)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~ 349 (1460)
+.++++.-.+|.|||..+..++..+...+ .+++|+=|..-...|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g-~~~~i~D~~g~~~~~~ 45 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG-PRVVIFDPKGDYSPLA 45 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC-CCEEEEcCCchHHHHH
Confidence 35788899999999998887777776655 3666665554444433
No 453
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=43.71 E-value=37 Score=38.15 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=39.9
Q ss_pred hcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHHC
Q 000500 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (1460)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~kw~ 356 (1460)
-.+.-.+|+-+.|+|||+.++.|+.........+++.|+-.....+..+.+..+.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFG 71 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTT
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcC
Confidence 3455678999999999999999987665541237888888777777777777654
No 454
>PRK08939 primosomal protein DnaI; Reviewed
Probab=43.63 E-value=36 Score=40.62 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=28.0
Q ss_pred cCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEE
Q 000500 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (1460)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIV 339 (1460)
.+.|.+|.-.+|.|||..+.+++..+...+. ++++|
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~-~v~~~ 190 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGV-SSTLL 190 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CEEEE
Confidence 3567789999999999999999999886553 34444
No 455
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=43.46 E-value=1.3e+02 Score=36.23 Aligned_cols=120 Identities=21% Similarity=0.288 Sum_probs=0.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHHCCCCeEEEEE---cChhHHHHHHHhhhcCCC
Q 000500 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYV---GTSQARNIIREYEFYFPK 383 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~kw~P~l~vvvy~---G~~~~r~~i~~~e~~~~~ 383 (1460)
.++.---|.|||.+..=++.++...+. ++|+.+--.--.--...++-|.-.+.+-+.. |...+--...-.+.-...
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g~-~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar 220 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQGK-SVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKAR 220 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCCC-eEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHc
Q ss_pred CchhhhccccCccccccccccccccEEEecHHHHHhhhcccCCCcceEEEeccccccCCcchHHHHHHHhc---------
Q 000500 384 NPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQY--------- 454 (1460)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~fdVvItSYe~l~~d~~~L~~i~w~~VIvDEAHrlKN~~Sk~~~al~~l--------- 454 (1460)
+ +++||||=|-|+-| +..++..|..+
T Consensus 221 ~--------------------------------------------~DvvliDTAGRLhn-k~nLM~EL~KI~rV~~k~~~ 255 (340)
T COG0552 221 G--------------------------------------------IDVVLIDTAGRLHN-KKNLMDELKKIVRVIKKDDP 255 (340)
T ss_pred C--------------------------------------------CCEEEEeCcccccC-chhHHHHHHHHHHHhccccC
Q ss_pred cccceEeec--cccccCCHH
Q 000500 455 STRHRVLLT--GTPLQNNLD 472 (1460)
Q Consensus 455 ~~~~rLLLT--GTPlqNnl~ 472 (1460)
.+.|.++|+ ||--||.+.
T Consensus 256 ~ap~e~llvlDAttGqnal~ 275 (340)
T COG0552 256 DAPHEILLVLDATTGQNALS 275 (340)
T ss_pred CCCceEEEEEEcccChhHHH
No 456
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=43.41 E-value=13 Score=32.18 Aligned_cols=34 Identities=29% Similarity=0.763 Sum_probs=20.7
Q ss_pred ecCCCCCcccccccCC--------CCCCCCCCCCCCCccCCCC
Q 000500 65 SCDTCTYAYHAKCLVP--------PLKAPPSGSWRCPECVSPL 99 (1460)
Q Consensus 65 ~Cd~C~~~~H~~Cl~P--------~l~~~p~~~W~C~~C~~~~ 99 (1460)
.|..|...|+..=-+| +..+. ..+|.||.|..+.
T Consensus 3 ~C~~CgyiYd~~~Gd~~~~i~pGt~f~~L-p~~w~CP~C~a~K 44 (50)
T cd00730 3 ECRICGYIYDPAEGDPDEGIPPGTPFEDL-PDDWVCPVCGAGK 44 (50)
T ss_pred CCCCCCeEECCCCCCcccCcCCCCCHhHC-CCCCCCCCCCCcH
Confidence 5777887776543222 11223 3589999997644
No 457
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=43.22 E-value=1.5e+02 Score=34.83 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=24.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEE
Q 000500 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVv 340 (1460)
.++.-..|.|||.++..++.++...+ .++++|.
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~g-~~V~li~ 107 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQG-KSVLLAA 107 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEEe
Confidence 45668999999999988888776554 3555554
No 458
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=42.93 E-value=1e+02 Score=38.12 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=22.7
Q ss_pred hhcCCcEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 301 ~~~~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
...|..+.|..+.|.|||..+..++..+...
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 3567788899999999998766655554433
No 459
>PRK12377 putative replication protein; Provisional
Probab=42.81 E-value=1.1e+02 Score=35.41 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=31.1
Q ss_pred CCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHH
Q 000500 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN 347 (1460)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~q 347 (1460)
..+.+|.-..|+|||..+.+++..+...+. .++++.-..++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~-~v~~i~~~~l~~~ 143 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGR-SVIVVTVPDVMSR 143 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CeEEEEHHHHHHH
Confidence 356789999999999999999999886643 4444433445543
No 460
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.49 E-value=1.1e+02 Score=37.35 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhcC---CcEEEEecCCCCcHHHHHHHHHHHHh
Q 000500 292 EGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (1460)
Q Consensus 292 egvnwL~~~~~~~---~~~ILADemGLGKTiqaIa~l~~L~~ 330 (1460)
..+..+.....++ ...+|.-+.|.|||..+-+++..+..
T Consensus 24 ~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 24 HITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3444444444443 35779999999999988888776654
No 461
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=42.44 E-value=2e+02 Score=34.61 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=24.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEE
Q 000500 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVv 340 (1460)
..|.-..|.|||.++..++..+...+ +.++|+.
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~~~g-~~V~Li~ 149 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYKAQG-KKVLLAA 149 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC-CeEEEEe
Confidence 44667999999999988888776554 3555554
No 462
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=42.16 E-value=27 Score=42.13 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=34.1
Q ss_pred hcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHH
Q 000500 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1460)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~kw 355 (1460)
....|.+|....|+|||..|-++.... ..+|+=|-=.++...|..|-++.
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akea----ga~fInv~~s~lt~KWfgE~eKl 174 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKEA----GANFINVSVSNLTSKWFGEAQKL 174 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHHc----CCCcceeeccccchhhHHHHHHH
Confidence 467889999999999999887766532 22444444455566777665553
No 463
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=42.15 E-value=22 Score=41.39 Aligned_cols=37 Identities=30% Similarity=0.604 Sum_probs=30.3
Q ss_pred ccccCCCCCCccChHHHHHHHHHHHHhccchhHHhhhCc
Q 000500 1073 LRYPGLRGGKFWKEEHDSLLLRAVLKHGYGRWQAIVDDK 1111 (1460)
Q Consensus 1073 ~~y~~~~~~~~w~~eeD~~LL~gi~k~GyG~We~Ik~D~ 1111 (1460)
..||- ....|+.+|+..|+-++-..|+|+|+.|-+-.
T Consensus 57 nsypI--~~e~WgadEEllli~~~~TlGlGNW~dIadyi 93 (432)
T COG5114 57 NSYPI--GEEGWGADEELLLIECLDTLGLGNWEDIADYI 93 (432)
T ss_pred cCccc--cCCCcCchHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 34543 35789999999999999999999999886544
No 464
>PF14061 Mtf2_C: Polycomb-like MTF2 factor 2
Probab=41.40 E-value=14 Score=31.50 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=17.9
Q ss_pred hhhhhc-cCCCCceEEEEEeccc
Q 000500 196 RILACR-GEDDEKEYLVKYKELS 217 (1460)
Q Consensus 196 RII~~r-~~~~~~eyLVKWkgL~ 217 (1460)
+|++.| ..++...|||-|.|.+
T Consensus 27 ~VlArRV~~dG~vQYLvEWeg~~ 49 (50)
T PF14061_consen 27 RVLARRVTPDGKVQYLVEWEGAT 49 (50)
T ss_pred EEEEEEEcCCCcEEEEEEecCcC
Confidence 778877 4678899999998864
No 465
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.19 E-value=3e+02 Score=33.90 Aligned_cols=72 Identities=21% Similarity=0.192 Sum_probs=47.6
Q ss_pred HhhhhHHHHHHHHHHHHHHcCceEEEEecch---hhHHHHHHHHHhcCCeEE-EEecCCCHHHHHHHHHHHhccCC
Q 000500 604 LESSGKLQLLDKMMVKLKEQGHRVLIYSQFQ---HMLDLLEDYLTFKKWQYE-RIDGKVGGAERQIRIDRFNAKNS 675 (1460)
Q Consensus 604 v~~SgKl~~L~klL~~l~~~g~KVLIFSq~~---~~LdiLed~L~~~g~~~~-ridGs~~~~eRq~~Id~Fn~~~s 675 (1460)
++.+||...+.++...++.+|.|+.+.|--+ ...|-|...-...+++|. .++..-+..--.+-+++|.+.+-
T Consensus 109 LqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~f 184 (483)
T KOG0780|consen 109 LQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENF 184 (483)
T ss_pred ccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCC
Confidence 4567788888888888888888888777654 245666665555666644 33444455566677888876443
No 466
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=40.64 E-value=1.6e+02 Score=36.72 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=31.0
Q ss_pred cceEEEeccccccCCcchHHHHHHHhcc-----ccceEeeccccccCCHHHHHHHHHhhcC
Q 000500 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYS-----TRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1460)
Q Consensus 428 ~w~~VIvDEAHrlKN~~Sk~~~al~~l~-----~~~rLLLTGTPlqNnl~EL~sLL~fL~p 483 (1460)
.++.++||.+=+..+. ..+...+..+. ....|.|++|--.+.+.++...+..+..
T Consensus 269 ~~d~VLIDTaGrsqrd-~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~ 328 (420)
T PRK14721 269 GKHMVLIDTVGMSQRD-QMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGI 328 (420)
T ss_pred CCCEEEecCCCCCcch-HHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 3577888886443322 23344444442 2345779999766666666655554433
No 467
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=40.62 E-value=8.5 Score=30.88 Aligned_cols=41 Identities=27% Similarity=0.547 Sum_probs=29.4
Q ss_pred ccccCCCC-CeeecCCCCCcccccccCCCCCCCCCCCCCCCccCC
Q 000500 54 CQACGESE-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1460)
Q Consensus 54 C~~C~~~g-~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~ 97 (1460)
|.+|...- +.+....|...||..|+..-+.. +...||.|..
T Consensus 2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCRT 43 (45)
T ss_pred CCcCchhhhCceEecCCCChhcHHHHHHHHHh---CcCCCCCCCC
Confidence 77787654 45555669999999999754443 4567999975
No 468
>PRK10263 DNA translocase FtsK; Provisional
Probab=40.61 E-value=62 Score=45.20 Aligned_cols=41 Identities=22% Similarity=0.406 Sum_probs=30.0
Q ss_pred cCCcEEEEecCCCCcHHHHHHHHHHHHhC-CCC--cEEEEEccc
Q 000500 303 KQTHVILADEMGLGKTIQSIAFLASLFGE-RIS--PHLVVAPLS 343 (1460)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~-~~~--p~LIVvP~s 343 (1460)
+..+.+++-.+|+|||+..-++|..+... ... .+++|=|+.
T Consensus 1009 k~PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK~ 1052 (1355)
T PRK10263 1009 KMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKM 1052 (1355)
T ss_pred cCCcEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCCc
Confidence 34688999999999999988888776543 222 566666664
No 469
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.54 E-value=72 Score=38.86 Aligned_cols=58 Identities=17% Similarity=0.085 Sum_probs=37.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHHCCCCeEEEEE
Q 000500 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYV 365 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~kw~P~l~vvvy~ 365 (1460)
.+++-=.|.|||.+..-+++|+..++.++.||.+-.- -.--.+.++.|+....+-+|.
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTF-RagAfDQLkqnA~k~~iP~yg 161 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTF-RAGAFDQLKQNATKARVPFYG 161 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccc-ccchHHHHHHHhHhhCCeeEe
Confidence 3467778999999988888888888776777666532 122234455555444444443
No 470
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=40.27 E-value=14 Score=43.25 Aligned_cols=51 Identities=22% Similarity=0.567 Sum_probs=31.7
Q ss_pred ccccccccccccCCC--C---CeeecCCCCCcc--------cccccCCCCCCCCC-CCCCCCccC
Q 000500 46 RIDAKDDSCQACGES--E---NLMSCDTCTYAY--------HAKCLVPPLKAPPS-GSWRCPECV 96 (1460)
Q Consensus 46 ~~~~~~~~C~~C~~~--g---~ll~Cd~C~~~~--------H~~Cl~P~l~~~p~-~~W~C~~C~ 96 (1460)
.++..+..|.|||+. | -|+-|..|.-.| |+.|....-..+.. ..=.||.|.
T Consensus 10 ydedl~ElCPVCGDkVSGYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CR 74 (475)
T KOG4218|consen 10 YDEDLGELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCR 74 (475)
T ss_pred CccccccccccccCccccceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchh
Confidence 444557789999974 2 299999998765 66665433322221 123577664
No 471
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=40.11 E-value=95 Score=36.97 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
-++..+-|.|||..|..++..+...
T Consensus 29 ~Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 29 HIIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred EEeECCCCCCHHHHHHHHHHHHcCC
Confidence 3789999999999999999887654
No 472
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=39.71 E-value=40 Score=41.05 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=28.4
Q ss_pred cCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcccc
Q 000500 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (1460)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sl 344 (1460)
.|+..+|+.+.|+|||..|+++...|-.. -||..++-..+
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~--~PF~~isgSEi 88 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGED--VPFVSISGSEI 88 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTT--S-EEEEEGGGG
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCC--CCeeEccccee
Confidence 46677899999999999999988876422 28888876543
No 473
>smart00300 ChSh Chromo Shadow Domain.
Probab=39.68 E-value=22 Score=31.98 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=23.5
Q ss_pred cchhhhhhhccCCCCceEEEEEecccccccccc
Q 000500 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWE 224 (1460)
Q Consensus 192 ~~veRII~~r~~~~~~eyLVKWkgL~Y~~~TWE 224 (1460)
..+++|+.....++...||+||++ + +..+-
T Consensus 7 ~~~e~Ivg~~d~~G~l~flikwk~-~--~~~lV 36 (61)
T smart00300 7 KSWEDIVGITKDDGELTFLIKWKD-D--AASLV 36 (61)
T ss_pred CCHHHHhceecCCCeEEEEEEEeC-C--cEEEE
Confidence 467889888778899999999999 4 44443
No 474
>PRK06921 hypothetical protein; Provisional
Probab=39.55 E-value=90 Score=36.48 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=28.3
Q ss_pred cCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEE
Q 000500 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1460)
Q Consensus 303 ~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVv 340 (1460)
.+.+.+|.-++|+|||..+.+++..+.......++.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 35678899999999999999999888765222444444
No 475
>PRK08760 replicative DNA helicase; Provisional
Probab=39.26 E-value=80 Score=40.13 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=46.3
Q ss_pred HHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHH
Q 000500 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1460)
Q Consensus 293 gvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~kw 355 (1460)
.++-+...+..+.=.|||...|.|||.-++.++.........|++++..-....+|...+...
T Consensus 218 ~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~ 280 (476)
T PRK08760 218 DFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISS 280 (476)
T ss_pred HHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHh
Confidence 333444455667778999999999999999998876543334889998887778887766443
No 476
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=38.83 E-value=1.4e+02 Score=41.12 Aligned_cols=96 Identities=11% Similarity=0.083 Sum_probs=65.8
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHH----HhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEE
Q 000500 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL----TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1460)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L----~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfL 681 (1460)
.+||..+....+-.....|.+|+|.+..+....-....+ ...++++..++|.++..++.+++..+..+..+ ++
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~d---IV 558 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKID---IL 558 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCce---EE
Confidence 477776544433333456889999999887766555444 33477888999999999999999988764333 56
Q ss_pred eeccc-cccccCccCCCEEEEecC
Q 000500 682 LSTRA-GGLGINLATADTVIIYDS 704 (1460)
Q Consensus 682 lSTrA-gg~GINL~~Ad~VIi~Ds 704 (1460)
++|.+ ....+.+.....||+=+-
T Consensus 559 IGTp~ll~~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 559 IGTHKLLQKDVKFKDLGLLIIDEE 582 (926)
T ss_pred EchHHHhhCCCCcccCCEEEeecc
Confidence 66654 344567777777777443
No 477
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=38.68 E-value=55 Score=38.17 Aligned_cols=42 Identities=26% Similarity=0.266 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHH
Q 000500 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF 329 (1460)
Q Consensus 286 LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~ 329 (1460)
+.+.|++.+.++.. ..++..+++-++|+|||...-+++..+.
T Consensus 64 ~~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 64 LKPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 67788888766532 3345578999999999998888887764
No 478
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.71 E-value=53 Score=41.28 Aligned_cols=109 Identities=18% Similarity=0.243 Sum_probs=77.5
Q ss_pred HHHHHHHHHHcC-ceEEEEecchhhHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEEeecccc-ccc
Q 000500 613 LDKMMVKLKEQG-HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG-GLG 690 (1460)
Q Consensus 613 L~klL~~l~~~g-~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfLlSTrAg-g~G 690 (1460)
+.++++.+...+ ..+|||-..---.=.|..|+...++.|..|.--++...-..+-+-|-.+... ++|.+-|+- =.-
T Consensus 540 v~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~--vlLyTER~hffrR 617 (698)
T KOG2340|consen 540 VDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKS--VLLYTERAHFFRR 617 (698)
T ss_pred HHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCce--EEEEehhhhhhhh
Confidence 567778777654 4578886543333457788888899999998877777777777888775544 466666663 455
Q ss_pred cCccCCCEEEEecCCCChhhHHHH---HHhhcccCC
Q 000500 691 INLATADTVIIYDSDWNPHADLQA---MARAHRLGQ 723 (1460)
Q Consensus 691 INL~~Ad~VIi~DsdWNP~~d~QA---igRahRiGQ 723 (1460)
..+.....||+|.||-||+-|.-. ++|..-.|.
T Consensus 618 ~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn 653 (698)
T KOG2340|consen 618 YHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGN 653 (698)
T ss_pred heecceeeEEEecCCCCcHHHHHHHhhhhhhhccCC
Confidence 677889999999999999987544 345544453
No 479
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=37.57 E-value=55 Score=37.77 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=23.7
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCCcEEEE--EccccH
Q 000500 312 EMGLGKTIQSIAFLASLFGERISPHLVV--APLSTL 345 (1460)
Q Consensus 312 emGLGKTiqaIa~l~~L~~~~~~p~LIV--vP~sll 345 (1460)
-=|.|||..+.++...|...+. ++|+| +|.+.+
T Consensus 10 kGGvG~TTltAnLA~aL~~~G~-~VlaID~dpqN~L 44 (243)
T PF06564_consen 10 KGGVGKTTLTANLAWALARLGE-SVLAIDLDPQNLL 44 (243)
T ss_pred CCCCCHHHHHHHHHHHHHHCCC-cEEEEeCCcHHHH
Confidence 3489999999999888877653 56655 554444
No 480
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=37.48 E-value=43 Score=37.91 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=32.3
Q ss_pred hhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEcc
Q 000500 300 SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1460)
Q Consensus 300 ~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~ 342 (1460)
.+..+.-.+|+-..|.|||..++.++..+......++|++...
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 4456667899999999999999988887765533477777643
No 481
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=37.34 E-value=49 Score=35.46 Aligned_cols=82 Identities=10% Similarity=0.024 Sum_probs=56.3
Q ss_pred hhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHH-h---cCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeE
Q 000500 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT-F---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCF 680 (1460)
Q Consensus 605 ~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~-~---~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vf 680 (1460)
..++++.++-+|+.+....|+||+|++....++..|.+.|= . .-++.++..+.. ..... +
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~~~~-------------~a~~P---V 73 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLDPQ-------------PEKQP---I 73 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCC-------------CCCCC---E
Confidence 46789999999999999999999999999999999999992 2 233444322221 01112 4
Q ss_pred EeeccccccccCccCCCEEEEecCCC
Q 000500 681 LLSTRAGGLGINLATADTVIIYDSDW 706 (1460)
Q Consensus 681 LlSTrAgg~GINL~~Ad~VIi~DsdW 706 (1460)
+|+. ++.+.| .++++|++++-+
T Consensus 74 ~L~~--~~~~p~--~~~vLiNL~~~~ 95 (154)
T PRK06646 74 YITD--ELQNPN--NASVLVIISPTD 95 (154)
T ss_pred EEec--CCCCCC--CCCEEEECCCcc
Confidence 5542 333444 788889888844
No 482
>PHA02929 N1R/p28-like protein; Provisional
Probab=37.13 E-value=13 Score=42.55 Aligned_cols=49 Identities=24% Similarity=0.542 Sum_probs=33.9
Q ss_pred ccccccccCCCCC--------eeecCCCCCcccccccCCCCCCCCCCCCCCCccCCCCCcc
Q 000500 50 KDDSCQACGESEN--------LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDI 102 (1460)
Q Consensus 50 ~~~~C~~C~~~g~--------ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~di 102 (1460)
.+..|.+|...-. +..-..|...||..|+.+-+...+ .||.|..+...|
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~----tCPlCR~~~~~v 229 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKN----TCPVCRTPFISV 229 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCC----CCCCCCCEeeEE
Confidence 3577999987511 122347999999999977665432 699999766544
No 483
>PRK05748 replicative DNA helicase; Provisional
Probab=37.13 E-value=75 Score=39.98 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=43.0
Q ss_pred HHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHH
Q 000500 292 EGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (1460)
Q Consensus 292 egvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~ 352 (1460)
.+++-+...+..+.-.+|+..+|.|||.-++.++.........+++++..--.-.+....+
T Consensus 191 ~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~ 251 (448)
T PRK05748 191 TDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRM 251 (448)
T ss_pred HHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHH
Confidence 3454454456677778999999999999999998876543334888887766555554443
No 484
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=37.12 E-value=1.1e+02 Score=37.74 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=40.3
Q ss_pred CCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHHHC
Q 000500 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (1460)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~kw~ 356 (1460)
+.-.+++-+.|.||+..-+-++..+.... ++|.|+=..-+.||+--..+..
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYVsGEES~~QiklRA~RL~ 143 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG--KVLYVSGEESLQQIKLRADRLG 143 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC--cEEEEeCCcCHHHHHHHHHHhC
Confidence 33457899999999987777777776554 8999999988999987777654
No 485
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=37.10 E-value=53 Score=43.63 Aligned_cols=32 Identities=31% Similarity=0.383 Sum_probs=25.3
Q ss_pred HhhhcCCcEEEEecCCCCcHHHHHHHHHHHHh
Q 000500 299 FSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1460)
Q Consensus 299 ~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~ 330 (1460)
.....+.-+|+--++|+|||.|...+|..-+.
T Consensus 388 q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~ 419 (1282)
T KOG0921|consen 388 QAVAENRVVIIKGETGCGKSTQVAQFLLESFL 419 (1282)
T ss_pred HHHhcCceeeEeecccccchhHHHHHHHHHHh
Confidence 34456777899999999999999888876553
No 486
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=37.07 E-value=83 Score=35.87 Aligned_cols=52 Identities=27% Similarity=0.250 Sum_probs=37.1
Q ss_pred hcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHH
Q 000500 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1460)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k 354 (1460)
..+...+++-+.|.|||+.++.|+...... ..+.|.|.-.....+-.+.+..
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEEHPVQVRRNMAQ 70 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeCCHHHHHHHHHH
Confidence 456667889999999999999988876533 2378888766555555444443
No 487
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=36.85 E-value=17 Score=31.89 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=20.2
Q ss_pred hhhhhhhccCC-CCceEEEEEeccccccccccc
Q 000500 194 VDRILACRGED-DEKEYLVKYKELSYDECYWEY 225 (1460)
Q Consensus 194 veRII~~r~~~-~~~eyLVKWkgL~Y~~~TWE~ 225 (1460)
+++|+.....+ ++..||+||++ ++..+-+
T Consensus 2 ~~~I~gat~~~~g~l~fl~kwk~---~~~~lVp 31 (54)
T cd00034 2 VKPISGASKSDDGELTFLAKWKD---GQASLVP 31 (54)
T ss_pred ceEEEEEEEcCCCeEEEEEEEeC---CeEEEEE
Confidence 56677665544 88999999999 4444443
No 488
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=36.79 E-value=56 Score=34.47 Aligned_cols=82 Identities=20% Similarity=0.072 Sum_probs=55.9
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHh----cCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeEE
Q 000500 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1460)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~----~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vfL 681 (1460)
.+.++.++.+|+.+....|+||+|++.....++.|.+.|=. .-++..+..+.. ....- ++
T Consensus 11 ~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~---------------~~~~P-V~ 74 (142)
T PRK05728 11 LSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEGP---------------AAGQP-VL 74 (142)
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCCC---------------CCCCC-EE
Confidence 56688999999999999999999999999999999999932 233333322221 11122 44
Q ss_pred eeccccccccCccCCCEEEEecCCC
Q 000500 682 LSTRAGGLGINLATADTVIIYDSDW 706 (1460)
Q Consensus 682 lSTrAgg~GINL~~Ad~VIi~DsdW 706 (1460)
|+. +..-+...++.+|+++..+
T Consensus 75 l~~---~~~~~~~~~~~LinL~~~~ 96 (142)
T PRK05728 75 LTW---PGKRNANHRDLLINLDGAV 96 (142)
T ss_pred EEc---CCCCCCCCCcEEEECCCCC
Confidence 441 2223667788899998764
No 489
>PHA00012 I assembly protein
Probab=36.76 E-value=83 Score=37.83 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=19.2
Q ss_pred EEEecCCCCcHHHHHHHHHHHHhCC
Q 000500 308 ILADEMGLGKTIQSIAFLASLFGER 332 (1460)
Q Consensus 308 ILADemGLGKTiqaIa~l~~L~~~~ 332 (1460)
++.--.|.|||+.|++-+...+..+
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHcC
Confidence 4556789999999998776666665
No 490
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=35.95 E-value=43 Score=41.00 Aligned_cols=47 Identities=17% Similarity=0.444 Sum_probs=36.8
Q ss_pred cCCChHHHHHHHHHHHhcCCCCcchhhhchhhcCCCHHHHHHH-HHHHHH
Q 000500 967 LGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREY-GILFLT 1015 (1460)
Q Consensus 967 ~GF~~w~Rr~Fv~a~~KyG~~~~~~~~ia~el~~Ks~eEvk~Y-a~lF~~ 1015 (1460)
.++|.-+=-.|+.|++.||+|+ |+.||.-+..||-+|++.+ -+.|..
T Consensus 73 ~~WtadEEilLLea~~t~G~GN--W~dIA~hIGtKtkeeck~hy~k~fv~ 120 (438)
T KOG0457|consen 73 PSWTADEEILLLEAAETYGFGN--WQDIADHIGTKTKEECKEHYLKHFVN 120 (438)
T ss_pred CCCChHHHHHHHHHHHHhCCCc--HHHHHHHHcccchHHHHHHHHHHHhc
Confidence 3555555567999999999998 6899999999999999865 334444
No 491
>PRK13766 Hef nuclease; Provisional
Probab=35.33 E-value=5.1e+02 Score=34.99 Aligned_cols=93 Identities=14% Similarity=0.259 Sum_probs=55.2
Q ss_pred hhhHHHHHHHHHHH-HHHcCceEEEEecchhhHHHHHHHHH----hcCCeEEEEecCCCHHHHHHHHHHHhccCCCCeeE
Q 000500 606 SSGKLQLLDKMMVK-LKEQGHRVLIYSQFQHMLDLLEDYLT----FKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCF 680 (1460)
Q Consensus 606 ~SgKl~~L~klL~~-l~~~g~KVLIFSq~~~~LdiLed~L~----~~g~~~~ridGs~~~~eRq~~Id~Fn~~~s~~~vf 680 (1460)
.+||.....-++.. +...+.++||.+.......-....+. ..+.++..++|.++..+|..+... .. ++
T Consensus 39 G~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~------~~-ii 111 (773)
T PRK13766 39 GLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK------AK-VI 111 (773)
T ss_pred CccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC------CC-EE
Confidence 47787643333332 34567899999998766644444443 334478899999998888655432 22 34
Q ss_pred Eeecccc-----ccccCccCCCEEEEecCC
Q 000500 681 LLSTRAG-----GLGINLATADTVIIYDSD 705 (1460)
Q Consensus 681 LlSTrAg-----g~GINL~~Ad~VIi~Dsd 705 (1460)
+++.+.. ..-+++...+.||+-+..
T Consensus 112 v~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 112 VATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred EECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 4444332 223456667777776544
No 492
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=35.26 E-value=1.8e+02 Score=38.97 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=23.1
Q ss_pred cEEEEecCCCCcHHHHHHHHHHHH-hCCCCcEEEEE
Q 000500 306 HVILADEMGLGKTIQSIAFLASLF-GERISPHLVVA 340 (1460)
Q Consensus 306 ~~ILADemGLGKTiqaIa~l~~L~-~~~~~p~LIVv 340 (1460)
-..|.-..|.|||.++.-++..+. ..+...+.+|.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit 222 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLT 222 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEec
Confidence 356889999999988777776653 33333444444
No 493
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=35.21 E-value=38 Score=37.93 Aligned_cols=41 Identities=32% Similarity=0.446 Sum_probs=25.8
Q ss_pred cceEEEeccccccCCcchHHHHHHHhccccceEeeccccccCCH
Q 000500 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNL 471 (1460)
Q Consensus 428 ~w~~VIvDEAHrlKN~~Sk~~~al~~l~~~~rLLLTGTPlqNnl 471 (1460)
..+.+||||++.+-... +.- +........+.|-|=|.|-..
T Consensus 62 ~~~~liiDE~~~~~~g~--l~~-l~~~~~~~~~~l~GDp~Q~~~ 102 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPGY--LLL-LLSLSPAKNVILFGDPLQIPY 102 (234)
T ss_pred cCCEEEEeccccCChHH--HHH-HHhhccCcceEEEECchhccC
Confidence 47889999999764321 111 333334446777799988653
No 494
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=35.03 E-value=7.1e+02 Score=34.25 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=21.4
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 307 ~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
.+|.-++|.|||..|-++...++..
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhCC
Confidence 5889999999999999888887643
No 495
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=34.91 E-value=98 Score=35.29 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=36.6
Q ss_pred hcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHHHH
Q 000500 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1460)
Q Consensus 302 ~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~~k 354 (1460)
..+.-.+|.-+.|.|||..++.++..+...+ .+.+.|+......+-.+.+..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~~e~~~~~~~~~~~~ 73 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVSTQLTTTEFIKQMMS 73 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHH
Confidence 4566778999999999999988888776543 367777765555444444433
No 496
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=34.90 E-value=3.8e+02 Score=32.92 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHhh-hc--CCcEEEEecCCCCcHHHHHHHHHHHHhC
Q 000500 285 SLHPYQLEGLNFLRFSW-SK--QTHVILADEMGLGKTIQSIAFLASLFGE 331 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~-~~--~~~~ILADemGLGKTiqaIa~l~~L~~~ 331 (1460)
.-|+-|++.+......+ .. ..+.++.-.+|+|||.++--++..+...
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 36788888875433222 22 3458999999999999988888777654
No 497
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=34.50 E-value=19 Score=39.80 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=33.3
Q ss_pred cccccccCCCCCeeecCCCCCcccccccCCCCCC------------CCCCCCCCCccCCCCC
Q 000500 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKA------------PPSGSWRCPECVSPLN 100 (1460)
Q Consensus 51 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~P~l~~------------~p~~~W~C~~C~~~~~ 100 (1460)
+-.|.+|.+.-.--....|...|++.|+..-+.. .......||.|..+..
T Consensus 18 ~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 18 DFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred ccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 5569999876542233579999999999643321 0123468999998653
No 498
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=34.44 E-value=1.9e+02 Score=35.82 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=30.7
Q ss_pred CCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEc-c---ccHHHHHHH
Q 000500 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-L---STLRNWERE 351 (1460)
Q Consensus 304 ~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP-~---sll~qW~~E 351 (1460)
+.-.+|+-..|.|||.++..++..+...+. ++.+|+- . ..+.||..-
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~-~V~lItaDtyR~gAveQLk~y 256 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNR-TVGFITTDTFRSGAVEQFQGY 256 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEeCCccCccHHHHHHHH
Confidence 444567888999999998888877755543 4444443 2 235676543
No 499
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=34.40 E-value=1.8e+02 Score=42.28 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHH---hCCCCcEEEEEccccH
Q 000500 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF---GERISPHLVVAPLSTL 345 (1460)
Q Consensus 285 ~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~---~~~~~p~LIVvP~sll 345 (1460)
.|.+-|.+++..+.. ...+-++|.-..|.|||.+.-+++..+. ......++.++|..--
T Consensus 835 ~Lt~~Qr~Av~~iLt--s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkA 896 (1623)
T PRK14712 835 KLTSGQRAATRMILE--TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRA 896 (1623)
T ss_pred ccCHHHHHHHHHHHh--CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHH
Confidence 689999999976522 2456688999999999988655544432 2222357778886443
No 500
>PRK06904 replicative DNA helicase; Validated
Probab=34.37 E-value=1e+02 Score=39.15 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=43.7
Q ss_pred HHHHHHHhhhcCCcEEEEecCCCCcHHHHHHHHHHHHhCCCCcEEEEEccccHHHHHHHH
Q 000500 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (1460)
Q Consensus 293 gvnwL~~~~~~~~~~ILADemGLGKTiqaIa~l~~L~~~~~~p~LIVvP~sll~qW~~E~ 352 (1460)
+++-+...|..+.=.|||.-+|.|||.-++.++.........|++++..--...++...+
T Consensus 210 ~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~Rl 269 (472)
T PRK06904 210 DLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRM 269 (472)
T ss_pred HHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHH
Confidence 444454566777788999999999999998887766433334888888876666665443
Done!