Query 000500
Match_columns 1460
No_of_seqs 645 out of 4038
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 17:43:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000500.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_272-275//hhsearch_pdb/000500hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 1.0 1 1 1023.9 41.0 705 98-836 36-788 (800)
2 1z3i_X Similar to RAD54-like; 1.0 1 1 680.6 37.6 476 284-779 54-573 (644)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 609.0 38.0 455 278-777 31-496 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 462.7 27.3 419 284-753 152-632 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 388.5 33.3 421 284-753 8-492 (494)
6 2fwr_A DNA repair protein RAD2 1.0 1 1 362.2 20.2 378 282-753 90-471 (472)
7 1z5z_A Helicase of the SNF2/RA 1.0 1 1 354.7 21.9 253 515-779 12-269 (271)
8 4a2w_A RIG-I, retinoic acid in 1.0 1 1 349.5 28.5 436 283-772 246-782 (936)
9 4a2q_A RIG-I, retinoic acid in 1.0 1 1 342.5 32.0 437 282-772 245-782 (797)
10 4a2p_A RIG-I, retinoic acid in 1.0 1 1 328.0 32.1 441 284-774 6-543 (556)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=1023.88 Aligned_cols=705 Identities=41% Similarity=0.714 Sum_probs=587.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 98765544434435675699983223411---256788666504887655444452447776311915899998676420
Q 000500 98 PLNDIDKILDCEMRPTVAGDSDVSKLGSK---QIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM 174 (1460)
Q Consensus 98 ~~~~idkIL~~r~~P~~~~~~~~~~~~~k---~~~~~EYLVKWkg~Sy~HctWvpe~~L~~~~~~~~~lk~kl~~f~kk~ 174 (1460)
....||+||++|..+...........-.+ .....||||||||+||+||||+|+++|.+. +++ .++.+|.++.
T Consensus 36 ~~~~ve~vl~~r~~~~~~~~~~~~~~~~~~~~~~~~~eylvKWkg~s~~hntWe~~e~L~~~----~~~-~~~~~~~k~~ 110 (800)
T 3mwy_W 36 DFHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQV----RGL-KRLDNYCKQF 110 (800)
T ss_dssp CCCBCSEEEEEECCCC--------CCSCCHHHHHHHCEEEEECSSSCTTSCEEECHHHHCSC----BTT-HHHHHHHHHH
T ss_pred CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEECCCCCHHHHHHC----CHH-HHHHHHHHHH
T ss_conf 88740212016546545677410136767678867627999968861110541387877434----157-9999999986
Q ss_pred CC--------CCCCHHH----------HCCCCCCCCCHHHHHHHCC-----CCCCCEEEEEEECCCCCCCCCCCCCCCC-
Q ss_conf 14--------9996012----------1018987631123522125-----8997128888712465643223345545-
Q 000500 175 SS--------NNNAEED----------FVAIRPEWTTVDRILACRG-----EDDEKEYLVKYKELSYDECYWEYESDIS- 230 (1460)
Q Consensus 175 ~~--------~~~~~e~----------~~~i~pe~~~veRII~~r~-----~~~~~eyLVKWkgL~Y~~~TWE~~~~~~- 230 (1460)
.. .....++ .....++|+.|||||+++. ..+..+|||||++|||++||||...++.
T Consensus 111 ~~~~~~~~~~~~~~~e~~e~~~~~~e~~~~~~~~~~~veRii~~~~~~~~~~~~~~~yLvKW~~L~y~~~tWe~~~~~~~ 190 (800)
T 3mwy_W 111 IIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVK 190 (800)
T ss_dssp THHHHHHTCSTTSCHHHHHHHHHHHHHHHHHHTTTTCEEEECCCCCEECTTSCEECBCCEEETTSCSTTCBCCBHHHHTT
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHH
T ss_conf 32778875189998788888756665420001113534689864113467898865999981578734264336344333
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 43689999987631246444675789996543457898323333478887889999888999999999855059727999
Q 000500 231 AFQPEIERFIKIQSRSHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILA 310 (1460)
Q Consensus 231 ~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILA 310 (1460)
..+..++.|..+......... ........+.|..+..+|+++.+++|||||++|++||.+.|.++.+||||
T Consensus 191 ~~~~~i~~~~~r~~~~~~~~~---------~~~~~~~~~~~~~~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILa 261 (800)
T 3mwy_W 191 LAPEQVKHFQNRENSKILPQY---------SSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILA 261 (800)
T ss_dssp TCHHHHHHHHHTTTCTTCSTT---------CCCCCSCCCCCCCCSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEEC
T ss_pred HHHHHHHHHHHHHHCCCCCCC---------HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 319999999976313447751---------01034557764002569986579975899999999999985138998998
Q ss_pred ECCCCCCHHHHHHHHHHHHH--CCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 04899728999999999871--8999699998432199999999988799809999858157889997520278991111
Q 000500 311 DEMGLGKTIQSIAFLASLFG--ERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKV 388 (1460)
Q Consensus 311 DemGLGKTiqaia~l~~L~~--~~~~p~LIVvP~sll~qW~~El~~w~P~~~vv~y~G~~~~R~~i~~~e~~~~~~~~~~ 388 (1460)
|+||||||+|+++++.+++. ...+|+|||||.+++.||.+||.+|+|.+++++|+|....+..++.++++.......
T Consensus 262 demGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~- 340 (800)
T 3mwy_W 262 DEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKG- 340 (800)
T ss_dssp CCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----
T ss_pred ECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCC-
T ss_conf 2787532999999999999860779988999880389999999999779964999827777788988877622630013-
Q ss_pred HCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf 00146753222322335553999207888730001378740278704432147833189999981113445760466656
Q 000500 389 KKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQ 468 (1460)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~fdViItSYe~l~~d~~~L~~i~w~~IIiDEAHrlKN~~Sk~~~~l~~l~~~~RLLLTGTPlq 468 (1460)
....+++|+||||+++..+...|..+.|++|||||||++||..++.++++..+.+.+||+|||||+|
T Consensus 341 -------------~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiq 407 (800)
T 3mwy_W 341 -------------KKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQ 407 (800)
T ss_dssp --------------CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCS
T ss_pred -------------CCCCCCCEEEECHHHHHHHHHHHHCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCC
T ss_conf -------------4456678899069999864999833773256413444414710199999997522438972278577
Q ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHH
Q ss_conf 89889999997422798899588999984243499999999961001333445445202998615988504899999999
Q 000500 469 NNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYY 548 (1460)
Q Consensus 469 Nnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~lL~p~iLRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y 548 (1460)
|++.|||+|++||.|+.|.....|............+..|+.++.|+++||++.++...||++.+.++.|+|++.|+.+|
T Consensus 408 N~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y 487 (800)
T 3mwy_W 408 NNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYY 487 (800)
T ss_dssp SCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHH
T ss_conf 99999999999858663674344232223146899999999997577753208766431688279999707999999999
Q ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHCCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999931-78513699999999997178653468899--------9435068999988432279999999999
Q 000500 549 KAILTRNYQILTRR-GGAQISLINVVMELRKLCCHPYMLEGVEP--------DIEDTNESFKQLLESSGKLQLLDKMMVK 619 (1460)
Q Consensus 549 ~~il~k~~~~l~~~-~~~~~~l~nil~~LRk~cnHP~L~~~~e~--------~~~~~~~~~~~li~~SgKl~~L~klL~~ 619 (1460)
+.++.++...+... .+...+++++++.||++|+||+++...+. ...........++..|+|+.+|.++|..
T Consensus 488 ~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~ 567 (800)
T 3mwy_W 488 KNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTR 567 (800)
T ss_dssp HHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999999998610354544699999999987358654235578998861566555778888766427699999999999
Q ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 99708629999311235899999987369708999667899999999999843699970698204654444476678899
Q 000500 620 LKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1460)
Q Consensus 620 l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGst~~~eRq~~Id~Fn~~~s~~fvfLlSTrAgg~GINL~~Ad~V 699 (1460)
+.+.|+||||||||+.++++|+++|...|+++.+|+|+++..+|+.+|++||++++..++||+||+|||+||||++|++|
T Consensus 568 ~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~V 647 (800)
T 3mwy_W 568 LKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTV 647 (800)
T ss_dssp HTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEE
T ss_pred HHHCCCEEEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEE
T ss_conf 75279818999635999999999998679978999699999999999999608999825999745445678776016368
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC--------CCCCCHHHHH
Q ss_conf 99658999221878987010139999269999930899999999999999999999965200--------0589999999
Q 000500 700 IIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK--------AQNINQEELD 771 (1460)
Q Consensus 700 Ii~DsdWNP~~d~QA~gRahRiGQ~k~V~VyrLvt~~TvEE~I~e~a~~K~~L~~~Vig~~~--------~~~~~~~el~ 771 (1460)
|+||++|||+.++||+||+||+||+++|.||+|++++|+||+|++++.+|+.|+++|++.+. ...++.+++.
T Consensus 648 I~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~ 727 (800)
T 3mwy_W 648 VIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELS 727 (800)
T ss_dssp EESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------------CCCCHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 99468788116899999988558986379999861998999999999998889999970375665321123478999999
Q ss_pred HHHHHCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC--CCHHHHHHHHHHHCCC
Q ss_conf 9998303432035576788854556898899998446887774457897--2024477673640111
Q 000500 772 DIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLDD--EDEDGFLKAFKVANFE 836 (1460)
Q Consensus 772 ~ll~~ga~~lf~~~~~~~~~~~~~~~~~~~id~ll~r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 836 (1460)
+||++|+..+|...+.. ..+.+.+||.||+|++...+..++.. ..+++|+++|+|++|.
T Consensus 728 ~ll~~g~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (800)
T 3mwy_W 728 AILKFGAGNMFTATDNQ------KKLEDLNLDDVLNHAEDHVTTPDLGESHLGGEEFLKQFEVTDYK 788 (800)
T ss_dssp HHHSSCSSSSCCSHHHH------HHHHTCCHHHHHHHCEECCCSCCCCCCEESCHHHHHTTC-----
T ss_pred HHHHCCHHHHHHCCCCC------CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCEEEECC
T ss_conf 99971657651145764------32540579999874343244646556565568898612003023
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=680.58 Aligned_cols=476 Identities=33% Similarity=0.552 Sum_probs=400.4
Q ss_pred CCCCHHHHHHHHHHHHHH-----HCCCCEEEEECCCCCCHHHHHHHHHHHHHCC------CCCEEEEECCCCHHHHHHHH
Q ss_conf 999888999999999855-----0597279990489972899999999987189------99699998432199999999
Q 000500 284 GSLHPYQLEGLNFLRFSW-----SKQTHVILADEMGLGKTIQSIAFLASLFGER------ISPHLVVAPLSTLRNWEREF 352 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~-----~~~~~~ILADemGLGKTiqaia~l~~L~~~~------~~p~LIVvP~sll~qW~~El 352 (1460)
..|||||.+|++||...+ ..+.+|||||+||+|||+|+|+++..+.... .+++|||||.+++.||.+||
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E~ 133 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEV 133 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHH
T ss_conf 03519999999999984233544588875961078742999999999999974866567778579996589988799999
Q ss_pred HHHCCC-CEEEEEECCHH-HHH-HHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCCC
Q ss_conf 988799-80999985815-788-999752027899111100146753222322335553999207888730001378740
Q 000500 353 ATWAPQ-MNVVMYVGTSQ-ARN-IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (1460)
Q Consensus 353 ~~w~P~-~~vv~y~G~~~-~R~-~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSYe~l~~d~~~L~~i~w 429 (1460)
.+|+|. +.++.+++... .+. .+..+ .... .....++|+|+||+++..+...+....|
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~------------------~~~~~~~vvi~ty~~l~~~~~~l~~~~~ 193 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNF--ISQQ------------------GMRIPTPILIISYETFRLHAEVLHKGKV 193 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHH--HCCC------------------SSCCSCCEEEEEHHHHHHHTTTTTTSCC
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHH--HHHC------------------CCCCCCCEEEEEHHHHHHHHHHHHCCCC
T ss_conf 9975887259998089889999999999--8733------------------7777875799638998765787504886
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH---------
Q ss_conf 27870443214783318999998111344576046665689889999997422798899588999984243---------
Q 000500 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN--------- 500 (1460)
Q Consensus 430 ~~IIiDEAHrlKN~~Sk~~~~l~~l~~~~RLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~--------- 500 (1460)
++||+||||++||..++.++++..+.+.+||+|||||+||++.|||++++|+.|+.+++...|...|....
T Consensus 194 ~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~ 273 (644)
T 1z3i_X 194 GLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADAS 273 (644)
T ss_dssp CEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCC
T ss_pred CEEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHCCCCCCC
T ss_conf 57998786224780459999998555673799846734588999999998618876899999998632615416776778
Q ss_pred ------HHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHH
Q ss_conf ------4999999999610013334454452029986159885048999999999999999999993-178513699999
Q 000500 501 ------QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTR-RGGAQISLINVV 573 (1460)
Q Consensus 501 ------~~~~i~~L~~lL~p~iLRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~k~~~~l~~-~~~~~~~l~nil 573 (1460)
....+..|+.++.|+++||++.++...||++.+.++.|+|++.|+.+|+.++......... .+......+..+
T Consensus 274 ~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l 353 (644)
T 1z3i_X 274 DKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSI 353 (644)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 88999999999999999889998710876764279836999983799899999999999899999876276214599999
Q ss_pred HHHHHHHCCCCCCCCC----CCCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHH
Q ss_conf 9999971786534688----99943506-------8999988432279999999999997-0862999931123589999
Q 000500 574 MELRKLCCHPYMLEGV----EPDIEDTN-------ESFKQLLESSGKLQLLDKMMVKLKE-QGHRVLIYSQFQHMLDLLE 641 (1460)
Q Consensus 574 ~~LRk~cnHP~L~~~~----e~~~~~~~-------~~~~~li~~SgKl~~L~klL~~l~~-~g~KVLIFSq~~~~LdiLe 641 (1460)
+.||++|+||+++... +....... .........|+|+.+|..++..+.. .++|+||||+++.++++|+
T Consensus 354 ~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~ 433 (644)
T 1z3i_X 354 TSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFE 433 (644)
T ss_dssp HHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
T ss_conf 99999957999888887415400355776454211100057011748999999999986469987999980599999999
Q ss_pred HHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 99873697089996678999999999998436999706982046544444766788999965899922187898701013
Q 000500 642 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1460)
Q Consensus 642 d~L~~~g~~~~ridGst~~~eRq~~Id~Fn~~~s~~fvfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QA~gRahRi 721 (1460)
.+|...|+.+.+++|+++..+|+.++++|+++.+..++||+||++||+||||+.|++||+||++|||..+.||+||+||+
T Consensus 434 ~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~ 513 (644)
T 1z3i_X 434 KLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 513 (644)
T ss_dssp HHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSST
T ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99997799789983999999999999996399999679998445566784652389899979999813799998840322
Q ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCHHHHHHHHHHCHH
Q ss_conf 999926999993089999999999999999999996520--0058999999999983034
Q 000500 722 GQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRL--KAQNINQEELDDIIRYGSK 779 (1460)
Q Consensus 722 GQ~k~V~VyrLvt~~TvEE~I~e~a~~K~~L~~~Vig~~--~~~~~~~~el~~ll~~ga~ 779 (1460)
||+++|.||+|++.+|+||+|++++.+|..|...|++.. ....++.++|.+++.++..
T Consensus 514 Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~Lf~~~~~ 573 (644)
T 1z3i_X 514 GQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSLNEK 573 (644)
T ss_dssp TCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHHHTCCCSS
T ss_pred CCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHCCCCC
T ss_conf 898726999988798899999999999999999985686054337899999998678987
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=608.99 Aligned_cols=455 Identities=31% Similarity=0.584 Sum_probs=398.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHHHC
Q ss_conf 8878899998889999999998550597279990489972899999999987189-996999984321999999999887
Q 000500 278 PEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWA 356 (1460)
Q Consensus 278 P~~~~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaia~l~~L~~~~-~~p~LIVvP~sll~qW~~El~~w~ 356 (1460)
|..+. ..|+|||.+|++|+...+..+.++||||+||+|||+++++++..+...+ .+++|||||.+++.||.+||.+|+
T Consensus 31 p~~~~-~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 31 PYNIK-ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKFA 109 (500)
T ss_dssp CCSCS-SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHHHHHHHHHHC
T ss_pred CHHHH-CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHC
T ss_conf 83320-03369999999999997417998899808997389999999998875589997899903899999999999977
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 99809999858157889997520278991111001467532223223355539992078887300013787402787044
Q 000500 357 PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDE 436 (1460)
Q Consensus 357 P~~~vv~y~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSYe~l~~d~~~L~~i~w~~IIiDE 436 (1460)
|..++.+++|.... .....++|+|+||+++..+.. +....|++||+||
T Consensus 110 ~~~~v~~~~g~~~~-------------------------------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDE 157 (500)
T 1z63_A 110 PHLRFAVFHEDRSK-------------------------------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDE 157 (500)
T ss_dssp TTSCEEECSSSTTS-------------------------------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEET
T ss_pred CCCEEEEEECCCHH-------------------------------CCCCCCCEEEEEHHHHHCCCH-HCCCCCCEEEEEC
T ss_conf 99559997267021-------------------------------003577689963799726302-1178728799808
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHC
Q ss_conf 321478331899999811134457604666568988999999742279889958899998424---34999999999610
Q 000500 437 GHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---NQEEQISRLHRMLA 513 (1460)
Q Consensus 437 AHrlKN~~Sk~~~~l~~l~~~~RLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~---~~~~~i~~L~~lL~ 513 (1460)
||+++|..++.++++..+.+.++|+|||||++|++.|||++++|+.|+.|++...|...|... ........|+.++.
T Consensus 158 aH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~ 237 (500)
T 1z63_A 158 AQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIIS 237 (500)
T ss_dssp GGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 41017876899999996004718997467777999999999998587757998999998525111466889999999976
Q ss_pred HHHHHHHHHH--HHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 0133344544--52029986159885048999999999999999999993178--5136999999999971786534688
Q 000500 514 PHLLRRVKKD--VMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGG--AQISLINVVMELRKLCCHPYMLEGV 589 (1460)
Q Consensus 514 p~iLRR~K~d--v~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~k~~~~l~~~~~--~~~~l~nil~~LRk~cnHP~L~~~~ 589 (1460)
|+++||++.+ +...+|++.+.++.++|++.|+..|+.+.......+....+ ....++..++.|+++|+||.++...
T Consensus 238 ~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~ 317 (500)
T 1z63_A 238 PFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGG 317 (500)
T ss_dssp TTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCS
T ss_pred HHEEEECCCCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHCCC
T ss_conf 67455025542411229997589998189999999999999999999986423210679999999999881799884385
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHH
Q ss_conf 9994350689999884322799999999999970862999931123589999998736-970899966789999999999
Q 000500 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRID 668 (1460)
Q Consensus 590 e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~-g~~~~ridGst~~~eRq~~Id 668 (1460)
+. ....++|+..+.+++..+...|+|+||||+++.+++.|..+|... |+.+.+++|+++..+|+.+++
T Consensus 318 ~~-----------~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~ 386 (500)
T 1z63_A 318 EQ-----------SVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIIS 386 (500)
T ss_dssp CC-----------CSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHH
T ss_pred CC-----------HHHCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
T ss_conf 20-----------1111552999999999987268868999721889999999998853887699979999999999999
Q ss_pred HHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 98436999706982046544444766788999965899922187898701013999926999993089999999999999
Q 000500 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (1460)
Q Consensus 669 ~Fn~~~s~~fvfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QA~gRahRiGQ~k~V~VyrLvt~~TvEE~I~e~a~~ 748 (1460)
+|++++... ++|+||+++|+||||+.|++||+||++|||..+.|++||+||+||+++|.||+|++++|+||+|++++.+
T Consensus 387 ~F~~~~~~~-vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~ 465 (500)
T 1z63_A 387 KFQNNPSVK-FIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAF 465 (500)
T ss_dssp HHHHCTTCC-CCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTT
T ss_pred HHCCCCCCC-EEEEECCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHH
T ss_conf 960899987-7999533355777445588899958998954589999988873898706999977489899999999999
Q ss_pred HHHHHHHHHCCC--CCCCCCHHHHHHHHHHC
Q ss_conf 999999996520--00589999999999830
Q 000500 749 KMVLEHLVVGRL--KAQNINQEELDDIIRYG 777 (1460)
Q Consensus 749 K~~L~~~Vig~~--~~~~~~~~el~~ll~~g 777 (1460)
|..+...+++.. ....++.+++.+++.+.
T Consensus 466 K~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~ 496 (500)
T 1z63_A 466 KRSLFKDIISSGDSWITELSTEELRKVIELS 496 (500)
T ss_dssp CSSSSSSGGGSTTGGGGSSCHHHHHHHHSCC
T ss_pred HHHHHHHHHHCCCCHHCCCCHHHHHHHHCCC
T ss_conf 9999999860685021159999999996468
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=462.66 Aligned_cols=419 Identities=20% Similarity=0.261 Sum_probs=324.8
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 9998889999999998550597279990489972899999999987189-996999984321999999999887998099
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNVV 362 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaia~l~~L~~~~-~~p~LIVvP~sll~qW~~El~~w~P~~~vv 362 (1460)
.+|+|||.+++.|+.. ..+.++||||+||+|||+++++++..+...+ .+++|||||.+++.||..||.+|+ ++.+.
T Consensus 152 ~~LrpyQ~eav~~~l~--~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~v~ 228 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGR--RHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRF-NLRFA 228 (968)
T ss_dssp SCCCHHHHHHHHHHHH--SSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHHHHHHHHHHS-CCCCE
T ss_pred CCCCHHHHHHHHHHHH--HCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHH-CCCEE
T ss_conf 9970999999999997--05898898789997599999999999998189982999957888999999999986-99879
Q ss_pred EEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHH---CCCCCCCCEEEEECCCCC
Q ss_conf 99858157889997520278991111001467532223223355539992078887300---013787402787044321
Q 000500 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCMIVDEGHR 439 (1460)
Q Consensus 363 ~y~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSYe~l~~d~---~~L~~i~w~~IIiDEAHr 439 (1460)
+++|.......... ......++|+|+||+++..+. ..+....|++|||||||+
T Consensus 229 v~~~~~~~~~~~~~------------------------~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~ 284 (968)
T 3dmq_A 229 LFDDERYAEAQHDA------------------------YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHH 284 (968)
T ss_dssp ECCHHHHHHHHHTT------------------------CSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSC
T ss_pred EECCCHHHHHHHHC------------------------CCCCCCCCEEEECHHHHHHCHHHHHHHHHCCCCEEEEHHHHH
T ss_conf 98062055543200------------------------364456898997689986487888876415877897444676
Q ss_pred CCCCCHH---HHHHHHHC--CCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-----------
Q ss_conf 4783318---99999811--1344576046665689889999997422798899588999984243499-----------
Q 000500 440 LKNKDSK---LFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEE----------- 503 (1460)
Q Consensus 440 lKN~~Sk---~~~~l~~l--~~~~RLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~----------- 503 (1460)
++|..+. .++.+..+ .+.++|+|||||++|++.|+|++++|+.|+.|++...|...+.....-.
T Consensus 285 ~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~ 364 (968)
T 3dmq_A 285 LVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNK 364 (968)
T ss_dssp CCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCC
T ss_pred HCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 25888754299999999862578589997687669879999999825930118989999999857889999998742678
Q ss_pred -----------------------------------HHHHHHHHH-----CHHHHHHHHHHHHHCCCCCEEEEEEECCCHH
Q ss_conf -----------------------------------999999961-----0013334454452029986159885048999
Q 000500 504 -----------------------------------QISRLHRML-----APHLLRRVKKDVMKELPPKKELILRVELSSK 543 (1460)
Q Consensus 504 -----------------------------------~i~~L~~lL-----~p~iLRR~K~dv~~~LP~k~e~iv~v~Ls~~ 543 (1460)
....+..++ ...++|+++..+ ..+|++....+.+.+++.
T Consensus 365 ~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l~~~~~ 443 (968)
T 3dmq_A 365 LSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKLPLPTQ 443 (968)
T ss_dssp CCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEECCCHH
T ss_pred CCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-CCCCHHHEEEEECCCCHH
T ss_conf 9988999999884203367887503622233379999999999986173326563226554-556711157523689999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999993178513699999999997178653-4688999435068999988432279999999999997
Q 000500 544 QKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM-LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKE 622 (1460)
Q Consensus 544 Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~cnHP~L-~~~~e~~~~~~~~~~~~li~~SgKl~~L~klL~~l~~ 622 (1460)
....|...... ........ ....+ .+|.. +....... ......+.|+..|.+++.. .
T Consensus 444 ~~~~~~~~~~~-----~~~~~~~~-------~~~~~-l~pe~~~~~l~~~~-------~~~~~~~~K~~~L~~ll~~--~ 501 (968)
T 3dmq_A 444 YQTAIKVSGIM-----GARKSAED-------RARDM-LYPERIYQEFEGDN-------ATWWNFDPRVEWLMGYLTS--H 501 (968)
T ss_dssp HHHHHHHHHHT-----TCCSSGGG-------GTHHH-HCSGGGTTTTTSSS-------CCTTTTSHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHH-----HHHHHHHH-------HHHHH-CCHHHHHHHHHHHH-------HCCCCCCHHHHHHHHHHHH--C
T ss_conf 99999987543-----02126677-------77641-08598998764333-------1356856799999999983--7
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf 086299993112358999999873-6970899966789999999999984369997069820465444447667889999
Q 000500 623 QGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (1460)
Q Consensus 623 ~g~KVLIFSq~~~~LdiLed~L~~-~g~~~~ridGst~~~eRq~~Id~Fn~~~s~~fvfLlSTrAgg~GINL~~Ad~VIi 701 (1460)
.+.++||||++..+++.|..+|.. .|+++..++|+++..+|+.+++.|+++.+ .+.+|++|+++++|||++.+++||+
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~-~~~vLvaT~v~~~GlDl~~~~~VI~ 580 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDT-GAQVLLCSEIGSEGRNFQFASHMVM 580 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTS-SCEEEECSCCTTCSSCCTTCCEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCC-CCCEEEECCHHHCCCCCCCCCEEEE
T ss_conf 999789996959999999999998749838998499999999999999747997-6308985334316888556767999
Q ss_pred ECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 6589992218789870101399992699999308999999999999999999
Q 000500 702 YDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLE 753 (1460)
Q Consensus 702 ~DsdWNP~~d~QA~gRahRiGQ~k~V~VyrLvt~~TvEE~I~e~a~~K~~L~ 753 (1460)
||++|||..+.|++||++|+||++.|.||++++.+|+|++|++...+|+.+.
T Consensus 581 ~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~ 632 (968)
T 3dmq_A 581 FDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAF 632 (968)
T ss_dssp SSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCS
T ss_pred ECCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCE
T ss_conf 5699987899987011430799850899980577719999999998678763
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=388.47 Aligned_cols=421 Identities=15% Similarity=0.193 Sum_probs=297.6
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC-CCHHHHHHHHHHHC--CCCE
Q ss_conf 99988899999999985505972799904899728999999999871899969999843-21999999999887--9980
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQMN 360 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaia~l~~L~~~~~~p~LIVvP~-sll~qW~~El~~w~--P~~~ 360 (1460)
.+|+|||.+++.|+ ..+ ++||+++||+|||++++.++..+.....+++|||||. +++.||.+++.+|+ |...
T Consensus 8 ~~l~~~Q~~~i~~~----~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 82 (494)
T 1wp9_A 8 IQPRIYQEVIYAKC----KET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (494)
T ss_dssp HCCCHHHHHHHHHG----GGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CCCCHHHHHHHHHH----HHC-CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHCCCHHH
T ss_conf 78639999999999----619-9899918998789999999999986479859999788899999999999874756111
Q ss_pred EEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHC--CCCCCCCEEEEECCCC
Q ss_conf 99998581578899975202789911110014675322232233555399920788873000--1378740278704432
Q 000500 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDEGH 438 (1460)
Q Consensus 361 vv~y~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSYe~l~~d~~--~L~~i~w~~IIiDEAH 438 (1460)
+..++|.......... ...++|+|+||+.+..... .+....|++||+||||
T Consensus 83 v~~~~g~~~~~~~~~~---------------------------~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 135 (494)
T 1wp9_A 83 IVALTGEKSPEERSKA---------------------------WARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAH 135 (494)
T ss_dssp EEEECSCSCHHHHHHH---------------------------HHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGG
T ss_pred EEEEECCCCHHHHHHH---------------------------CCCCCEEEECHHHHHHHHHCCCCCHHHCEEEEEECCC
T ss_conf 6876077533556653---------------------------3579899963999999986087156541089997875
Q ss_pred CCCCCCHHHH--HHHHH-CCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCC---CHHHHHHHH-H-------HHHHHHH
Q ss_conf 1478331899--99981-1134457604666568988999999742279889---958899998-4-------2434999
Q 000500 439 RLKNKDSKLF--SSLKQ-YSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFG---SLEEFQEEF-K-------DINQEEQ 504 (1460)
Q Consensus 439 rlKN~~Sk~~--~~l~~-l~~~~RLLLTGTPlqNnl~EL~sLL~fL~p~~f~---~~~~F~~~f-~-------~~~~~~~ 504 (1460)
++++..+... ..+.. ....++++|||||. ++..+++.++.++....+. ....+...| . .......
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (494)
T 1wp9_A 136 RAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEI 214 (494)
T ss_dssp GCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHH
T ss_pred CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHHEEECCCCCCHHHHHHCCCCCEEEEECCCCHH
T ss_conf 66888819999999973288776999956998-88578999998507000502678758788752787426895688588
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH-----------------------
Q ss_conf 999999610013334454452029986159885048999999999999999999993-----------------------
Q 000500 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTR----------------------- 561 (1460)
Q Consensus 505 i~~L~~lL~p~iLRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~k~~~~l~~----------------------- 561 (1460)
...+...+.+++.++.+......+..... ..++......... .....+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (494)
T 1wp9_A 215 YKEVRKLLREMLRDALKPLAETGLLESSS----PDIPKKEVLRAGQ---IINEEMAKGNHDLRGLLLYHAMALKLHHAIE 287 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCC----TTSCHHHHHHHHH---HHHHHHTTTCCSTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCCHHHHHHHHH---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999989899999999999735565457----7733557899999---9998753356311347999988888999999
Q ss_pred --CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH----------HHHHHHHHHHHHHHHHHHH--HCCCEE
Q ss_conf --17851369999999999717865346889994350689999----------8843227999999999999--708629
Q 000500 562 --RGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQ----------LLESSGKLQLLDKMMVKLK--EQGHRV 627 (1460)
Q Consensus 562 --~~~~~~~l~nil~~LRk~cnHP~L~~~~e~~~~~~~~~~~~----------li~~SgKl~~L~klL~~l~--~~g~KV 627 (1460)
.......+...+..+...+.|+...... .. ........ ....++|+..|.++|.... ..++|+
T Consensus 288 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~ 364 (494)
T 1wp9_A 288 LLETQGLSALRAYIKKLYEEAKAGSTKASK--EI-FSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKI 364 (494)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTCCHHHH--HH-HTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCE
T ss_pred HHHHHCHHHHHHHHHHHHHHHCCCCCHHHH--HH-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 998525799999999998752232114556--66-650788989999998874589986999999999998436899759
Q ss_pred EEEECCHHHHHHHHHHHHHCCCEEEEEEC--------CCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 99931123589999998736970899966--------7899999999999843699970698204654444476678899
Q 000500 628 LIYSQFQHMLDLLEDYLTFKKWQYERIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1460)
Q Consensus 628 LIFSq~~~~LdiLed~L~~~g~~~~ridG--------st~~~eRq~~Id~Fn~~~s~~fvfLlSTrAgg~GINL~~Ad~V 699 (1460)
||||++..+++.|.++|...|+.+.+++| +++..+|+.++++|+++. ..+|++|.++++||||+.+++|
T Consensus 365 lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~---~~vLv~T~~~~~Gldl~~~~~V 441 (494)
T 1wp9_A 365 IVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE---FNVLVATSVGEEGLDVPEVDLV 441 (494)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS---CSEEEECGGGGGGGGSTTCCEE
T ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCCHHCCEE
T ss_conf 9997668999999999997599807996566544444589999999999986699---4699988841258871437989
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 996589992218789870101399992699999308999999999999999999
Q 000500 700 IIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLE 753 (1460)
Q Consensus 700 Ii~DsdWNP~~d~QA~gRahRiGQ~k~V~VyrLvt~~TvEE~I~e~a~~K~~L~ 753 (1460)
|+||++|||..+.|++||++|.|| +.+|+|++.+|+||+++.++.+|..+.
T Consensus 442 i~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~ 492 (494)
T 1wp9_A 442 VFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIM 492 (494)
T ss_dssp EESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC------
T ss_pred EEECCCCCHHHHHHHHHHCCCCCC---CEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 992898878999998752257788---469999956987899999888789873
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=362.24 Aligned_cols=378 Identities=16% Similarity=0.215 Sum_probs=281.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC-CCHHHHHHHHHHHCCCCE
Q ss_conf 8999988899999999985505972799904899728999999999871899969999843-219999999998879980
Q 000500 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMN 360 (1460)
Q Consensus 282 ~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaia~l~~L~~~~~~p~LIVvP~-sll~qW~~El~~w~P~~~ 360 (1460)
.+.+|+|||.++++++ ..+.++||+++||+|||++++.++..+ ..++|||||. +++.||.++|.+| +..
T Consensus 90 ~~~~l~~~Q~~ai~~i----~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~~--~~~ 159 (472)
T 2fwr_A 90 AEISLRDYQEKALERW----LVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGIF--GEE 159 (472)
T ss_dssp CCCCBCHHHHHHHHHH----TTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGGG--CGG
T ss_pred CCCCCCHHHHHHHHHH----HHCCCEEEEECCCCCHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHHHHHHC--CCC
T ss_conf 8998688999999999----965987999699998899999999980----999999987999999999999967--996
Q ss_pred -EEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf -9999858157889997520278991111001467532223223355539992078887300013787402787044321
Q 000500 361 -VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHR 439 (1460)
Q Consensus 361 -vv~y~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSYe~l~~d~~~L~~i~w~~IIiDEAHr 439 (1460)
+.+++|... ...+|+|+||+.+......+. -.|++|||||||+
T Consensus 160 ~v~~~~g~~~-----------------------------------~~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~ 203 (472)
T 2fwr_A 160 YVGEFSGRIK-----------------------------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHH 203 (472)
T ss_dssp GEEEBSSSCB-----------------------------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGG
T ss_pred CEEEECCCCC-----------------------------------CCCCEEEEECHHHHHHHHHHC-CCCCEEEEECCCC
T ss_conf 3699878767-----------------------------------767789997689997799736-8777899989757
Q ss_pred CCCCCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 47833189999981113445760466656898899999974227988995889999842434999999999610013334
Q 000500 440 LKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRR 519 (1460)
Q Consensus 440 lKN~~Sk~~~~l~~l~~~~RLLLTGTPlqNnl~EL~sLL~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~lL~p~iLRR 519 (1460)
+.+.... ..+..+...++++|||||.+++-.+ ..+..++.+.+.++
T Consensus 204 ~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~--------------------------------~~l~~~~~~~~~~~ 249 (472)
T 2fwr_A 204 LPAESYV--QIAQMSIAPFRLGLTATFEREDGRH--------------------------------EILKEVVGGKVFEL 249 (472)
T ss_dssp TTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGG--------------------------------GSHHHHTCCEEEEC
T ss_pred CCCHHHH--HHHHHCCCCEEEEEECCCCCCCCHH--------------------------------HHHHHHHCCEEEEC
T ss_conf 8976899--9997357781899932766889778--------------------------------99999729857654
Q ss_pred HHHHHHH-CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
Q ss_conf 4544520-299861598850489999999999999999999931785136999999999971786534688999435068
Q 000500 520 VKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNE 598 (1460)
Q Consensus 520 ~K~dv~~-~LP~k~e~iv~v~Ls~~Qk~~Y~~il~k~~~~l~~~~~~~~~l~nil~~LRk~cnHP~L~~~~e~~~~~~~~ 598 (1460)
...++.. .+++.....+.+++++.+...|..+.......+............ +..+-.++. ..............
T Consensus 250 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~ 325 (472)
T 2fwr_A 250 FPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAED-FNKIVMASG---YDERAYEALRAWEE 325 (472)
T ss_dssp CHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSS-STTTTTTTC---CSSSSSTTTHHHHH
T ss_pred CHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH-HHHHHHHHC---CCHHHHHHHHHHHH
T ss_conf 78987067678818999985899899999999999999999864754224466-899998723---69889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCE
Q ss_conf 99998843227999999999999708629999311235899999987369708999667899999999999843699970
Q 000500 599 SFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRF 678 (1460)
Q Consensus 599 ~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~g~~~~ridGst~~~eRq~~Id~Fn~~~s~~f 678 (1460)
........+.|+..|.+++.. ..++++||||++..+++.|...|. +..++|.++..+|+.+++.|+++..
T Consensus 326 ~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~--- 395 (472)
T 2fwr_A 326 ARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRF--- 395 (472)
T ss_dssp HHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSC---
T ss_pred HHHHHHCCHHHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHC-----CCEEECCCCHHHHHHHHHHHHCCCC---
T ss_conf 999763373899999999985--789838999797999999999748-----6556289999999999999867998---
Q ss_pred EEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCC-CCEEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 6982046544444766788999965899922187898701013999-92699999308999999999999999999
Q 000500 679 CFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT-NKVMIFRLITRGSIEERMMQMTKKKMVLE 753 (1460)
Q Consensus 679 vfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QA~gRahRiGQ~-k~V~VyrLvt~~TvEE~I~e~a~~K~~L~ 753 (1460)
.+|++|+++++|||++.+++||++|++|||..+.|+.||++|.||. +.|.||+|++++|+|+++.++.++|..++
T Consensus 396 ~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 396 RAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp SBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC---------------
T ss_pred CEEEECCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 8899857051484620286899989999888999987631577799853999999819985379999998765058
No 7
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=354.66 Aligned_cols=253 Identities=27% Similarity=0.440 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 13334454452029986159885048999999999999999999993178--5136999999999971786534688999
Q 000500 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGG--AQISLINVVMELRKLCCHPYMLEGVEPD 592 (1460)
Q Consensus 515 ~iLRR~K~dv~~~LP~k~e~iv~v~Ls~~Qk~~Y~~il~k~~~~l~~~~~--~~~~l~nil~~LRk~cnHP~L~~~~e~~ 592 (1460)
--+||+|++|..+||++.+.+++|+|++.|+++|+.++.+....+....+ ....+++.++.||++|+||+++....
T Consensus 12 ~~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~-- 89 (271)
T 1z5z_A 12 SGLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE-- 89 (271)
T ss_dssp ----------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSC--
T ss_pred CCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCC--
T ss_conf 564164877875199977999981899999999999999999999740352128899999999999848998846873--
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 4350689999884322799999999999970862999931123589999998736-970899966789999999999984
Q 000500 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFN 671 (1460)
Q Consensus 593 ~~~~~~~~~~li~~SgKl~~L~klL~~l~~~g~KVLIFSq~~~~LdiLed~L~~~-g~~~~ridGst~~~eRq~~Id~Fn 671 (1460)
.+...|+|+..|.++|..+.+.|+|+||||+++.++++|+.+|... |+++.+++|+++..+|+.++++|+
T Consensus 90 ---------~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~ 160 (271)
T 1z5z_A 90 ---------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQ 160 (271)
T ss_dssp ---------CCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHH
T ss_pred ---------CCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHC
T ss_conf ---------22346899999999999998679969999551999999999998733984799979999999999999832
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 36999706982046544444766788999965899922187898701013999926999993089999999999999999
Q 000500 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMV 751 (1460)
Q Consensus 672 ~~~s~~fvfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QA~gRahRiGQ~k~V~VyrLvt~~TvEE~I~e~a~~K~~ 751 (1460)
+++... +||+||++||+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++.+|+||+|++++.+|..
T Consensus 161 ~~~~~~-v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~ 239 (271)
T 1z5z_A 161 NNPSVK-FIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRS 239 (271)
T ss_dssp HCTTCC-EEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHH
T ss_pred CCCCCC-EEEEEHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 899997-8997223515886764489999979999851899999852323899856999985498899999999999999
Q ss_pred HHHHHHCCCC--CCCCCHHHHHHHHHHCHH
Q ss_conf 9999965200--058999999999983034
Q 000500 752 LEHLVVGRLK--AQNINQEELDDIIRYGSK 779 (1460)
Q Consensus 752 L~~~Vig~~~--~~~~~~~el~~ll~~ga~ 779 (1460)
+...+++... ...++.+++.+++.++..
T Consensus 240 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 269 (271)
T 1z5z_A 240 LFKDIISSGDSWITELSTEELRKVIELSVG 269 (271)
T ss_dssp HHTTGGGGTTHHHHTSCHHHHHHHHSCCCT
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHCCCCC
T ss_conf 999997167054323899999999655889
No 8
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=349.45 Aligned_cols=436 Identities=14% Similarity=0.156 Sum_probs=264.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCC----CCCEEEEECC-CCHHHHHHHHHHHCC
Q ss_conf 99998889999999998550597279990489972899999999987189----9969999843-219999999998879
Q 000500 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWAP 357 (1460)
Q Consensus 283 g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaia~l~~L~~~~----~~p~LIVvP~-sll~qW~~El~~w~P 357 (1460)
..+|+|||.+++.++ ..+.++|++++||+|||++++..+....... .+++|||||. +++.||.++|.+|++
T Consensus 246 ~~~~r~~Q~~ai~~i----l~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH----HCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 898779999999999----8099899996998459999999999999736556898599996989999999999999712
Q ss_pred --CCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHCC--C-CCCCCEEE
Q ss_conf --980999985815788999752027899111100146753222322335553999207888730001--3-78740278
Q 000500 358 --QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--L-KPIKWQCM 432 (1460)
Q Consensus 358 --~~~vv~y~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSYe~l~~d~~~--L-~~i~w~~I 432 (1460)
++.+..++|+...+..... ....++|+|+||+.+...... + ....|++|
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~--------------------------~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~li 375 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEK--------------------------VIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375 (936)
T ss_dssp TTTCCEEEECCC-----CCHH--------------------------HHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEE
T ss_pred CCCCEEEEEECCCCHHHHHHH--------------------------HCCCCCEEEECHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 169559999799631257897--------------------------416999999449999999871764533678799
Q ss_pred EECCCCCCCCCCHHHHHHHHHCC---------CCCEEEECCCCCCCCHHHHHHHH-------HHHCCCCC----CCHHHH
Q ss_conf 70443214783318999998111---------34457604666568988999999-------74227988----995889
Q 000500 433 IVDEGHRLKNKDSKLFSSLKQYS---------TRHRVLLTGTPLQNNLDELFMLM-------HFLDAGKF----GSLEEF 492 (1460)
Q Consensus 433 IiDEAHrlKN~~Sk~~~~l~~l~---------~~~RLLLTGTPlqNnl~EL~sLL-------~fL~p~~f----~~~~~F 492 (1460)
||||||++.+..+ ....+..+. ...+++|||||.+++..++..++ ..+....+ .....+
T Consensus 376 ViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l 454 (936)
T 4a2w_A 376 IFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQEL 454 (936)
T ss_dssp EEETGGGCSTTCH-HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred EEECCCCCCCCCC-HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHH
T ss_conf 9987313599866-999999999986313788673998638855454020899999999999854971553465448999
Q ss_pred HHHHHHHH-----------------HHHHHHHHHHHHCHHH----------------------HHHHHHHHHHCCCCCEE
Q ss_conf 99984243-----------------4999999999610013----------------------33445445202998615
Q 000500 493 QEEFKDIN-----------------QEEQISRLHRMLAPHL----------------------LRRVKKDVMKELPPKKE 533 (1460)
Q Consensus 493 ~~~f~~~~-----------------~~~~i~~L~~lL~p~i----------------------LRR~K~dv~~~LP~k~e 533 (1460)
...+.... .......++.++..++ ....+......+|.
T Consensus 455 ~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~--- 531 (936)
T 4a2w_A 455 QRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLED--- 531 (936)
T ss_dssp HHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSC---
T ss_pred HHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC---
T ss_conf 87536776237733655675799999999999999999887665553202233225779999999999887740553---
Q ss_pred EEEEECCCHHHHHHHHHHHHHH------HHHHH-HCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH----HHH
Q ss_conf 9885048999999999999999------99999-317851369999999999717865346889994350689----999
Q 000500 534 LILRVELSSKQKEYYKAILTRN------YQILT-RRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNES----FKQ 602 (1460)
Q Consensus 534 ~iv~v~Ls~~Qk~~Y~~il~k~------~~~l~-~~~~~~~~l~nil~~LRk~cnHP~L~~~~e~~~~~~~~~----~~~ 602 (1460)
...+...+..+.... ...+. ..... .......+...+....- .+..+........ ...
T Consensus 532 -------~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~---~~~~~~~l~~~~~~~~~-~~~~~~e~~l~~~~~~~~~~ 600 (936)
T 4a2w_A 532 -------KEEESRICRALFICTEHLRKYNDALIISEDAR---IIDALSYLTEFFTNVKN-GPYTELEQHLTAKFQEKEPE 600 (936)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHH
T ss_pred -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHH
T ss_conf -------21035799999999999999888875002042---88899999999998763-25887899999989999999
Q ss_pred H-------HHHHHHHHHHHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHHC------------CCEEEEEECCCCHH
Q ss_conf 8-------843227999999999999--70862999931123589999998736------------97089996678999
Q 000500 603 L-------LESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFK------------KWQYERIDGKVGGA 661 (1460)
Q Consensus 603 l-------i~~SgKl~~L~klL~~l~--~~g~KVLIFSq~~~~LdiLed~L~~~------------g~~~~ridGst~~~ 661 (1460)
+ ...++|+..|.++|.... ..++|+||||+++.+++.|.++|... |..+..++|+++..
T Consensus 601 l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~ 680 (936)
T 4a2w_A 601 LIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLP 680 (936)
T ss_dssp HHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC---------------
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHH
T ss_conf 99764056778979999999999985358997499996979999999999863735366661699657876567888999
Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHH
Q ss_conf 99999999843699970698204654444476678899996589992218789870101399992699999308999999
Q 000500 662 ERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEER 741 (1460)
Q Consensus 662 eRq~~Id~Fn~~~s~~fvfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QA~gRahRiGQ~k~V~VyrLvt~~TvEE~ 741 (1460)
+|++++++|+++ +.+.||++|+++++||||+.+++||+||++|||..++|++|| |+.+.+.+|.|++.+|+|++
T Consensus 681 eR~~il~~Fr~~--g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~ 754 (936)
T 4a2w_A 681 SQKGVLDAFKTS--KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN 754 (936)
T ss_dssp ---------------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHH
T ss_pred HHHHHHHHHHCC--CCEEEEEEECCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHH
T ss_conf 999999986315--981599980726427760558989993899988999996487----78888779999869889999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 9999999999999996520005899999999
Q 000500 742 MMQMTKKKMVLEHLVVGRLKAQNINQEELDD 772 (1460)
Q Consensus 742 I~e~a~~K~~L~~~Vig~~~~~~~~~~el~~ 772 (1460)
.. ....|..+...++..+ +.++.+++..
T Consensus 755 ~~-~~~~ke~~~~~~i~~l--~~~~~~~~~~ 782 (936)
T 4a2w_A 755 EK-CNRYKEEMMNKAVEKI--QKWDEETFAK 782 (936)
T ss_dssp HH-HHHHHHHHHHHHHHHH--HTSCHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHH--HCCCHHHHHH
T ss_conf 99-9889999999999986--4479999999
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=342.52 Aligned_cols=437 Identities=14% Similarity=0.151 Sum_probs=266.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCC----CCCEEEEECC-CCHHHHHHHHHHHC
Q ss_conf 899998889999999998550597279990489972899999999987189----9969999843-21999999999887
Q 000500 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWA 356 (1460)
Q Consensus 282 ~g~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaia~l~~L~~~~----~~p~LIVvP~-sll~qW~~El~~w~ 356 (1460)
...+|+|||.+++.++ ..+.++|++++||+|||++++..+..+.... .+++|||||. +++.||.++|.+|+
T Consensus 245 g~~~l~~~Q~~~i~~~----l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 245 ETKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ---CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH----HHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 8899999999999999----809998999699972999999999999984665679969999698999999999999861
Q ss_pred C--CCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHCC--C-CCCCCEE
Q ss_conf 9--980999985815788999752027899111100146753222322335553999207888730001--3-7874027
Q 000500 357 P--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--L-KPIKWQC 431 (1460)
Q Consensus 357 P--~~~vv~y~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSYe~l~~d~~~--L-~~i~w~~ 431 (1460)
+ ++.+..++|........... ....+|+|+||+.+...... + ....|++
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~--------------------------~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~ 374 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKV--------------------------IEDSDIIVVTPQILVNSFEDGTLTSLSIFTL 374 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHH--------------------------HHTCSEEEECHHHHHHHHHSSSCCCGGGCSE
T ss_pred CCCCCEEEEEECCCCHHHHHHHH--------------------------HCCCCEEEECHHHHHHHHHHCCCCCCCCCCE
T ss_conf 43794699996996232469974--------------------------0799999976699999998265465133778
Q ss_pred EEECCCCCCCCCCHHHHHHHHHC-C--------CCCEEEECCCCCCCCHHHHHH-------HHHHHCCCC----CCCHHH
Q ss_conf 87044321478331899999811-1--------344576046665689889999-------997422798----899588
Q 000500 432 MIVDEGHRLKNKDSKLFSSLKQY-S--------TRHRVLLTGTPLQNNLDELFM-------LMHFLDAGK----FGSLEE 491 (1460)
Q Consensus 432 IIiDEAHrlKN~~Sk~~~~l~~l-~--------~~~RLLLTGTPlqNnl~EL~s-------LL~fL~p~~----f~~~~~ 491 (1460)
|||||||++.+..+ ....+..+ . ..++++|||||.+++..++.. +...+.... ......
T Consensus 375 iViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~ 453 (797)
T 4a2q_A 375 MIFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQE 453 (797)
T ss_dssp EEETTGGGCSTTSH-HHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHH
T ss_pred EEEECCCCCCCCCC-HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf 99988635588764-99999999997631478878599972775545522489999999999985498488545431788
Q ss_pred HHHHHHHHH-----------------HHHHHHHHHHHHCHHHH----------------------HHHHHHHHHCCCCCE
Q ss_conf 999984243-----------------49999999996100133----------------------344544520299861
Q 000500 492 FQEEFKDIN-----------------QEEQISRLHRMLAPHLL----------------------RRVKKDVMKELPPKK 532 (1460)
Q Consensus 492 F~~~f~~~~-----------------~~~~i~~L~~lL~p~iL----------------------RR~K~dv~~~LP~k~ 532 (1460)
+...+.... ....+..++.++..++- ...+......++
T Consensus 454 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--- 530 (797)
T 4a2q_A 454 LQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLE--- 530 (797)
T ss_dssp HHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCS---
T ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC---
T ss_conf 99735888548884577778678999999999999999998756776530000114056778999999987774034---
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHH------HHHH-HCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-------HH
Q ss_conf 598850489999999999999999------9999-317851369999999999717865346889994350-------68
Q 000500 533 ELILRVELSSKQKEYYKAILTRNY------QILT-RRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDT-------NE 598 (1460)
Q Consensus 533 e~iv~v~Ls~~Qk~~Y~~il~k~~------~~l~-~~~~~~~~l~nil~~LRk~cnHP~L~~~~e~~~~~~-------~~ 598 (1460)
....+...+..+..... ..+. ..... .......++..|.+..-. +........ ..
T Consensus 531 -------~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 599 (797)
T 4a2q_A 531 -------DKEEESRICRALFICTEHLRKYNDALIISEDAR---IIDALSYLTEFFTNVKNG-PYTELEQHLTAKFQEKEP 599 (797)
T ss_dssp -------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHTTHH
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHH
T ss_conf -------320256799999999999999998876541325---888999999999987504-766899999999999999
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHH------------CCCEEEEEECCCCH
Q ss_conf 99----998843227999999999999--7086299993112358999999873------------69708999667899
Q 000500 599 SF----KQLLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTF------------KKWQYERIDGKVGG 660 (1460)
Q Consensus 599 ~~----~~li~~SgKl~~L~klL~~l~--~~g~KVLIFSq~~~~LdiLed~L~~------------~g~~~~ridGst~~ 660 (1460)
.. ......++|+..|.++|.... ..++|+||||+++.+++.|.++|.. .|..+..++|+++.
T Consensus 600 ~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~ 679 (797)
T 4a2q_A 600 ELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTL 679 (797)
T ss_dssp HHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC--------------
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCH
T ss_conf 99876307888995999999999998505899708999795899999999997475646655218984477545789899
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHH
Q ss_conf 99999999984369997069820465444447667889999658999221878987010139999269999930899999
Q 000500 661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1460)
Q Consensus 661 ~eRq~~Id~Fn~~~s~~fvfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QA~gRahRiGQ~k~V~VyrLvt~~TvEE 740 (1460)
.+|+.++++|+++ +.+.+|++|+++++|||++.+++||+||++|||..++|++|| |+.+++.+|.|++.+++++
T Consensus 680 ~eR~~~l~~F~~~--g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR----GR~~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 680 PSQKGVLDAFKTS--KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVE 753 (797)
T ss_dssp ----------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHH
T ss_pred HHHHHHHHHHHCC--CCCEEEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHH
T ss_conf 9999999985136--970499974805447975108989994899988999985388----8787865999972876889
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 99999999999999996520005899999999
Q 000500 741 RMMQMTKKKMVLEHLVVGRLKAQNINQEELDD 772 (1460)
Q Consensus 741 ~I~e~a~~K~~L~~~Vig~~~~~~~~~~el~~ 772 (1460)
+ ......|..+...++..+ +.++.+++..
T Consensus 754 ~-~~~~~~ke~~~~~~i~~l--~~~~~~~~~~ 782 (797)
T 4a2q_A 754 N-EKCNRYKEEMMNKAVEKI--QKWDEETFAK 782 (797)
T ss_dssp H-HHHHHHHHHHHHHHHHHH--HTSCHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHH--HCCCHHHHHH
T ss_conf 9-998889999999999987--4579899999
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=328.04 Aligned_cols=441 Identities=15% Similarity=0.181 Sum_probs=265.1
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCC----CCCEEEEECC-CCHHHHHHHHHHHCC-
Q ss_conf 9998889999999998550597279990489972899999999987189----9969999843-219999999998879-
Q 000500 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWAP- 357 (1460)
Q Consensus 284 ~~LrpyQlegvnwL~~~~~~~~~~ILADemGLGKTiqaia~l~~L~~~~----~~p~LIVvP~-sll~qW~~El~~w~P- 357 (1460)
.+|+|||.+++.++ ..+.++|++++||+|||++++..+....... .+++|||||. +++.||.+++.++++
T Consensus 6 ~~~~~~Q~~~i~~~----~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHH----HCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 78779999999999----74998999819997189999999999998374567986999928899999999999987240
Q ss_pred -CCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHCC--C-CCCCCEEEE
Q ss_conf -980999985815788999752027899111100146753222322335553999207888730001--3-787402787
Q 000500 358 -QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--L-KPIKWQCMI 433 (1460)
Q Consensus 358 -~~~vv~y~G~~~~R~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSYe~l~~d~~~--L-~~i~w~~II 433 (1460)
++.+..++|........... ....+|+|+|++.+...... + ....|++||
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~--------------------------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vV 135 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKV--------------------------IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMI 135 (556)
T ss_dssp GTCCEEECCCC-----CHHHH--------------------------HHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEE
T ss_pred CCCEEEEEECCCCCCHHHHHH--------------------------HCCCCEEEECHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 694599982898742228986--------------------------179999998899999999837502503077999
Q ss_pred ECCCCCCCCCCHHHHHHHHHC---------CCCCEEEECCCCCCCCH-------HHHHHHHHHHCCCCCC----CHHHHH
Q ss_conf 044321478331899999811---------13445760466656898-------8999999742279889----958899
Q 000500 434 VDEGHRLKNKDSKLFSSLKQY---------STRHRVLLTGTPLQNNL-------DELFMLMHFLDAGKFG----SLEEFQ 493 (1460)
Q Consensus 434 iDEAHrlKN~~Sk~~~~l~~l---------~~~~RLLLTGTPlqNnl-------~EL~sLL~fL~p~~f~----~~~~F~ 493 (1460)
+||||++.+... ....+..+ ....+++|||||.+++. ..+..+...+....+. ....+.
T Consensus 136 iDEah~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~ 214 (556)
T 4a2p_A 136 FDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQ 214 (556)
T ss_dssp EETGGGCSTTSH-HHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHH
T ss_pred EECCCCCCCCCH-HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCHHCCHHHHH
T ss_conf 988753588645-9999999998530136888769999478566751669999999999998539848433320267787
Q ss_pred HHHHHHH-------------H----HHHHHHHHHHHCH----------------------HHHHHHHHHHHHCCCCCEEE
Q ss_conf 9984243-------------4----9999999996100----------------------13334454452029986159
Q 000500 494 EEFKDIN-------------Q----EEQISRLHRMLAP----------------------HLLRRVKKDVMKELPPKKEL 534 (1460)
Q Consensus 494 ~~f~~~~-------------~----~~~i~~L~~lL~p----------------------~iLRR~K~dv~~~LP~k~e~ 534 (1460)
..+.... . ......++..+.. ++....+......+|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----- 289 (556)
T 4a2p_A 215 RFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLE----- 289 (556)
T ss_dssp HHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC--------
T ss_pred HCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-----
T ss_conf 427998537998278767759999999999999999888632012103333443356789999999987764054-----
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHH------HH-HCCCCHHHHHHHHHH-HHHHHCCCCCC------CCCCCCCCCCHHHH
Q ss_conf 885048999999999999999999------99-317851369999999-99971786534------68899943506899
Q 000500 535 ILRVELSSKQKEYYKAILTRNYQI------LT-RRGGAQISLINVVME-LRKLCCHPYML------EGVEPDIEDTNESF 600 (1460)
Q Consensus 535 iv~v~Ls~~Qk~~Y~~il~k~~~~------l~-~~~~~~~~l~nil~~-LRk~cnHP~L~------~~~e~~~~~~~~~~ 600 (1460)
....+...|..+....... +. ............+.. +.....+.+.. ..............
T Consensus 290 -----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (556)
T 4a2p_A 290 -----DKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALS 364 (556)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf -----320167899999999999999999998861120789999999999998733798789999998766788764210
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHHC------------CCEEEEEECCCCHHHHHHH
Q ss_conf 998843227999999999999--70862999931123589999998736------------9708999667899999999
Q 000500 601 KQLLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFK------------KWQYERIDGKVGGAERQIR 666 (1460)
Q Consensus 601 ~~li~~SgKl~~L~klL~~l~--~~g~KVLIFSq~~~~LdiLed~L~~~------------g~~~~ridGst~~~eRq~~ 666 (1460)
......++|+..|.++|.... ..++|+||||+++.+++.|.++|... |..+..++|+++..+|+.+
T Consensus 365 ~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~ 444 (556)
T 4a2p_A 365 KDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGV 444 (556)
T ss_dssp HCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHH
T ss_conf 37899996999999999998347998549999765899999999998587755000147873677655656698999999
Q ss_pred HHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHH
Q ss_conf 99984369997069820465444447667889999658999221878987010139999269999930899999999999
Q 000500 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (1460)
Q Consensus 667 Id~Fn~~~s~~fvfLlSTrAgg~GINL~~Ad~VIi~DsdWNP~~d~QA~gRahRiGQ~k~V~VyrLvt~~TvEE~I~e~a 746 (1460)
+++|+++ +.+.+|++|+++++|||++.+++||+||++|||..++|++|| |+.+++.+|.|++.++++++ ....
T Consensus 445 ~~~F~~~--g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~ 517 (556)
T 4a2p_A 445 LDAFKTS--KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCN 517 (556)
T ss_dssp -----------CCEEEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHH
T ss_pred HHHHCCC--CCEEEEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHH-HHHH
T ss_conf 9984046--965899976704337775217889991899978899886387----87888418999827636777-7755
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 9999999999652000589999999999
Q 000500 747 KKKMVLEHLVVGRLKAQNINQEELDDII 774 (1460)
Q Consensus 747 ~~K~~L~~~Vig~~~~~~~~~~el~~ll 774 (1460)
..|..+...++..+ +.++.+++...+
T Consensus 518 ~~k~~~~~~~i~~i--~~~~~~~~~~~i 543 (556)
T 4a2p_A 518 RYKEEMMNKAVEKI--QKWDEETFAKKI 543 (556)
T ss_dssp HHHHHHHHHHHHHH--HTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HCCCHHHHHHHH
T ss_conf 79999999999972--068967899999
Done!