BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000501
(1459 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q61493|DPOLZ_MOUSE DNA polymerase zeta catalytic subunit OS=Mus musculus GN=Rev3l PE=1
SV=3
Length = 3122
Score = 437 bits (1123), Expect = e-121, Method: Compositional matrix adjust.
Identities = 239/556 (42%), Positives = 332/556 (59%), Gaps = 47/556 (8%)
Query: 923 QDISQISGPD-GRSKPTPLSQIGFQDPASAGAGEQLTLLSIEVQAESRGDLRPDPRYDSI 981
++ SQI GP + +S Q+ + + LTL+S+E+ A +R DL+PDP +D I
Sbjct: 2254 KETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLQPDPEFDPI 2313
Query: 982 NVVALAFENDS-------DHAVEIYVLLYCKSESHQ--RSLV------GIPDCKVFVCSK 1026
+ +D+ + V+ K+ +HQ RS GI +V +
Sbjct: 2314 CALFYCISSDTPLPDTEKTELTGVIVIDKDKTVTHQDIRSQTPLLIRSGITGLEVTYAAD 2373
Query: 1027 EIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESKIAAG 1086
E LF I+ +DPDIL+G++IQ S G+L +RAA L + L ISR P
Sbjct: 2374 EKALFQEITNIIKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLCQMISRVP-------- 2425
Query: 1087 DSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEV 1146
D +I R AE D++G S +++ GRI LN+WR+MR EV
Sbjct: 2426 DDKIENR----------FAAE---------RDDYGSDTMSEINIVGRITLNLWRIMRNEV 2466
Query: 1147 KLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQL 1206
L YT E V+ VL ++ P FRVL+ WF + R++ V++ V R + NL+++ QL
Sbjct: 2467 ALTNYTFENVSFHVLHQRFPLFTFRVLSDWFDNKTDLYRWKMVDHYVSRVRGNLQMLEQL 2526
Query: 1207 DMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMEC 1266
D+I +TSE+AR+FGI F VL+RGSQYRVESM+LR+A NY+ ++P Q + A +C
Sbjct: 2527 DLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSIQQRSQMRAPQC 2586
Query: 1267 LPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKIL---PSKENTLGVSSFR 1323
+PL+MEPES FY++ V+VLDFQSLYPS++IAYN CF TCLG + E G +S R
Sbjct: 2587 VPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLR 2646
Query: 1324 PDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQIL 1383
+L ++ ++ + PNGV +V P VRKGVLPR+LEEIL TR+MVKQ++K + L
Sbjct: 2647 VPPDLLYQIRHDVTVSPNGVAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKSYK-QDRAL 2705
Query: 1384 HRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKW 1443
R+ NARQL LKLIANVT+GYTAA FSGRMPC E+ DSIV R TLE+AI VN+ +KW
Sbjct: 2706 SRMLNARQLGLKLIANVTFGYTAANFSGRMPCIEVGDSIVHKARETLERAIKLVNDTKKW 2765
Query: 1444 KAKVIYGDTDRYTVCI 1459
A+V+YGDTD V +
Sbjct: 2766 GARVVYGDTDSMFVLL 2781
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 108/187 (57%), Gaps = 35/187 (18%)
Query: 10 IFSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPY 69
+FSVRIV+ D+YMA P+PG D C S L V +VPV+RV+G+TPAGQKTCLH+H PY
Sbjct: 1 MFSVRIVTADYYMASPLPGLDTCQSPLTQLPVKKVPVVRVFGATPAGQKTCLHLHGIFPY 60
Query: 70 LYVPCADIPVQLRQEDDGYMHAISLALEKALKVK-GSAGSKRQHVHECSLVRAK------ 122
LYVP Q+ + Y+ ++ ++++AL V G+ S QHV + SLV
Sbjct: 61 LYVPYDG----YGQQPESYLSQMAFSIDRALNVALGNPSSTAQHVFKVSLVSGMPFYGYH 116
Query: 123 ------------------------KGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLH 158
+ GA+ +K QPHE+HIP+LLQ +DYNLYGM ++
Sbjct: 117 EKERHFMKIYLYNPAMVKRICELLQSGAIMNKCYQPHEAHIPYLLQLFIDYNLYGMNLIN 176
Query: 159 LSKLKFR 165
L+ +KFR
Sbjct: 177 LAAVKFR 183
>sp|O60673|DPOLZ_HUMAN DNA polymerase zeta catalytic subunit OS=Homo sapiens GN=REV3L PE=1
SV=2
Length = 3130
Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust.
Identities = 236/556 (42%), Positives = 330/556 (59%), Gaps = 47/556 (8%)
Query: 923 QDISQISGPD-GRSKPTPLSQIGFQDPASAGAGEQLTLLSIEVQAESRGDLRPDPRYDSI 981
++ SQI GP + +S Q+ + + LTL+S+E+ A +R DL PDP +D I
Sbjct: 2262 KETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLEPDPEFDPI 2321
Query: 982 NVVALAFENDS-------DHAVEIYVL-----LYCKSESHQRSLV---GIPDCKVFVCSK 1026
+ +D+ + V+ ++ + +Q L+ GI +V +
Sbjct: 2322 CALFYCISSDTPLPDTEKTELTGVIVIDKDKTVFSQDIRYQTPLLIRSGITGLEVTYAAD 2381
Query: 1027 EIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESKIAAG 1086
E LF I+ +DPDIL+G++IQ S G+L +RAA L I L ISR P
Sbjct: 2382 EKALFHEIANIIKRYDPDILLGYEIQMHSWGYLLQRAAALSIDLCRMISRVP-------- 2433
Query: 1087 DSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEV 1146
D +I R AE DE+G S +++ GRI LN+WR+MR EV
Sbjct: 2434 DDKIENR----------FAAE---------RDEYGSYTMSEINIVGRITLNLWRIMRNEV 2474
Query: 1147 KLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQL 1206
L YT E V+ VL ++ P FRVL+ WF + R++ V++ V R + NL+++ QL
Sbjct: 2475 ALTNYTFENVSFHVLHQRFPLFTFRVLSDWFDNKTDLYRWKMVDHYVSRVRGNLQMLEQL 2534
Query: 1207 DMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMEC 1266
D+I +TSE+AR+FGI F VL+RGSQYRVESM+LR+A NY+ ++P Q + A +C
Sbjct: 2535 DLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQMRAPQC 2594
Query: 1267 LPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKIL---PSKENTLGVSSFR 1323
+PL+MEPES FY++ V+VLDFQSLYPS++IAYN CF TCLG + E G +S R
Sbjct: 2595 VPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLR 2654
Query: 1324 PDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQIL 1383
+L ++ ++ + PNGV +V P VRKGVLPR+LEEIL TR MVKQ++K + L
Sbjct: 2655 VPPDLLYQVRHDITVSPNGVAFVKPSVRKGVLPRMLEEILKTRFMVKQSMKAYK-QDRAL 2713
Query: 1384 HRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKW 1443
R+ +ARQL LKLIANVT+GYT+A FSGRMPC E+ DSIV R TLE+AI VN+ +KW
Sbjct: 2714 SRMLDARQLGLKLIANVTFGYTSANFSGRMPCIEVGDSIVHKARETLERAIKLVNDTKKW 2773
Query: 1444 KAKVIYGDTDRYTVCI 1459
A+V+YGDTD V +
Sbjct: 2774 GARVVYGDTDSMFVLL 2789
Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 107/187 (57%), Gaps = 35/187 (18%)
Query: 10 IFSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPY 69
+FSVRIV+ D+YMA P+ G D C S L V +VPV+RV+G+TPAGQKTCLH+H PY
Sbjct: 1 MFSVRIVTADYYMASPLQGLDTCQSPLTQAPVKKVPVVRVFGATPAGQKTCLHLHGIFPY 60
Query: 70 LYVPCADIPVQLRQEDDGYMHAISLALEKALKVK-GSAGSKRQHVHECSLVRAK------ 122
LYVP Q+ + Y+ ++ ++++AL V G+ S QHV + SLV
Sbjct: 61 LYVPYDG----YGQQPESYLSQMAFSIDRALNVALGNPSSTAQHVFKVSLVSGMPFYGYH 116
Query: 123 ------------------------KGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLH 158
+ GA+ +K QPHE+HIP+LLQ +DYNLYGM ++
Sbjct: 117 EKERHFMKIYLYNPTMVKRICELLQSGAIMNKFYQPHEAHIPYLLQLFIDYNLYGMNLIN 176
Query: 159 LSKLKFR 165
L+ +KFR
Sbjct: 177 LAAVKFR 183
>sp|P14284|DPOZ_YEAST DNA polymerase zeta catalytic subunit OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=REV3 PE=1 SV=1
Length = 1504
Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/525 (38%), Positives = 300/525 (57%), Gaps = 49/525 (9%)
Query: 944 GFQDPASAGAGEQLTLLSIEVQAESRGDLRPDPRYDSINVVALAFEN-----DSDHAVEI 998
G Q + + LT L++E+ A +R D PDP D ++++ E D D A E
Sbjct: 654 GKQKRKKSSVHDSLTHLTLEIHANTRSDKIPDPAIDEVSMIIWCLEEETFPLDLDIAYEG 713
Query: 999 YVLLYCKSESH------QRSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQ 1052
++++ SE Q + IP V E +F ++ DPDIL G++I
Sbjct: 714 IMIVHKASEDSTFPTKIQHCINEIP---VMFYESEFEMFEALTDLVLLLDPDILSGFEIH 770
Query: 1053 GGSLGFLAERAAHL-GIGLLNDISRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLA 1111
S G++ ER + ++ +++R + K D+
Sbjct: 771 NFSWGYIIERCQKIHQFDIVRELARVKCQIKTKLSDT----------------------- 807
Query: 1112 KDAIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFR 1171
WG H+SG+ + GR ++N+WR +R +V L YT+E+ A +L +++P F
Sbjct: 808 --------WGYAHSSGIMITGRHMINIWRALRSDVNLTQYTIESAAFNILHKRLPHFSFE 859
Query: 1172 VLTK-WFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRG 1230
LT W A + Y + RA++N++++ + D I R E AR+ GIDF SV RG
Sbjct: 860 SLTNMWNAKKSTTELKTVLNYWLSRAQINIQLLRKQDYIARNIEQARLIGIDFHSVYYRG 919
Query: 1231 SQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSL 1290
SQ++VES L+R+ +++++ +SPG V Q A+EC+PLVMEPES FY P++VLDFQSL
Sbjct: 920 SQFKVESFLIRICKSESFILLSPGKKDVRKQKALECVPLVMEPESAFYKSPLIVLDFQSL 979
Query: 1291 YPSMMIAYNLCFCTCLGKI--LPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPP 1348
YPS+MI YN C+ T +G++ + EN LGVS F ++L LK+++ I PNGV+Y
Sbjct: 980 YPSIMIGYNYCYSTMIGRVREINLTENNLGVSKFSLPRNILALLKNDVTIAPNGVVYAKT 1039
Query: 1349 KVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAG 1408
VRK L ++L +IL R+M+K+ + ++ L R+ N +QLALKL+ANVTYGYT+A
Sbjct: 1040 SVRKSTLSKMLTDILDVRVMIKKTMNEIGDDNTTLKRLLNNKQLALKLLANVTYGYTSAS 1099
Query: 1409 FSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
FSGRMPC++LADSIVQ GR TLEKAI + ++E W AKV+YGDTD
Sbjct: 1100 FSGRMPCSDLADSIVQTGRETLEKAIDIIEKDETWNAKVVYGDTD 1144
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 50/211 (23%)
Query: 4 SQPDSNIFSVRIVSIDHYMAPPI---PGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTC 60
S S+ F +++ + D+YM+ P P + SL + ++VP IRV+G+ P G +
Sbjct: 16 SSSKSDYFRIQLNNQDYYMSKPTFLDPSHG---ESLPLNQFSQVPNIRVFGALPTGHQVL 72
Query: 61 LHIHRALPYLYVP----CADIPVQLRQEDDGYMH-AISLALEKALKVKGS-----AGSKR 110
H+H LPY+++ D LR + +H + + + + K K AG K
Sbjct: 73 CHVHGILPYMFIKYDGQITDTST-LRHQRCAQVHKTLEVKIRASFKRKKDDKHDLAGDKL 131
Query: 111 QHVHECSLVRAKKG---------------------------------GAVFDKSLQPHES 137
+++ + V KG G +F K + +ES
Sbjct: 132 GNLNFVADVSVVKGIPFYGYHVGWNLFYKISLLNPSCLSRISELIRDGKIFGKKFEIYES 191
Query: 138 HIPFLLQFLVDYNLYGMGHLHLSKLKFRHPV 168
HIP+LLQ+ D+NL+G +++ + FR PV
Sbjct: 192 HIPYLLQWTADFNLFGCSWINVDRCYFRSPV 222
>sp|Q9P6L6|DPOZ_SCHPO DNA polymerase zeta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rev3 PE=3 SV=1
Length = 1480
Score = 350 bits (897), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 198/531 (37%), Positives = 303/531 (57%), Gaps = 43/531 (8%)
Query: 927 QISGPDGRSKPTPLSQIGFQDPASAGAGEQLTLLSIEVQAESRGDLRPDPRYDSINVVAL 986
+I P S+ S++ +DP S + +L++E+ S G L PDP DSI
Sbjct: 630 EIQSPQRLSR----SKVFRKDPYSC-----VRILALELFCCSHGGLTPDPTKDSIECCFW 680
Query: 987 AFENDSDHAV--EIYVLLYCKSESHQRSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPD 1044
A++ D + ++ + ++ KS S+ P C V V + E+ L + I + DP
Sbjct: 681 AYQEDVNSSMIDRVGFIVVDKSASNSSFGRSFPSCTVLVVNSELELINEVIGLNRQLDPT 740
Query: 1045 ILMGWDIQGGSLGFLAERAAH-LGIGLLNDISRTPLESKIAAGDSEISERGITDNMLAEP 1103
I+ G+++ S G+L ERA++ L +SR SK
Sbjct: 741 IVCGYEVHNSSWGYLIERASYRFNYDLPEQLSRLKCTSK--------------------- 779
Query: 1104 VVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRR 1163
A A E+ W T S +++ GR VLN+WR++RGEV L Y++E V + ++
Sbjct: 780 -------ANFAKKENAWKYTTTSSINIVGRHVLNIWRILRGEVNLLNYSLENVVLNIFKK 832
Query: 1164 KIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDF 1223
+ P + S + + Y++ R + LEI++ ++ + E AR+ GIDF
Sbjct: 833 QTPYYNQADKVHLWQSSRFHEKQILLNYMLNRTRYCLEILSACAIVTKIREQARIIGIDF 892
Query: 1224 FSVLSRGSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVV 1283
SV+SRGSQ++VES++ R+A +NY+ SP QVA Q A+E LPLVMEP+S Y +PVV
Sbjct: 893 MSVISRGSQFKVESIMFRIAKPENYIFPSPSAKQVAEQNALEALPLVMEPKSDLYNNPVV 952
Query: 1284 VLDFQSLYPSMMIAYNLCFCTCLGKI-LPSKENTLGVSSFRPDLHVLRDLKDELLIPPNG 1342
VLDFQSLYPS++IAYNLC+ TCLG + + + + LG + +++ +K+++ I PNG
Sbjct: 953 VLDFQSLYPSIIIAYNLCYSTCLGPVKIVNGKVKLGFMFHSSNPNIVNLIKNDVYISPNG 1012
Query: 1343 VMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTY 1402
YV VRK +L ++LEE++ TR MVK+ +K ++++ N+RQLALKLIANVTY
Sbjct: 1013 YAYVKENVRKSLLAKMLEELIETRNMVKRGMKDC--DSDYVNKVLNSRQLALKLIANVTY 1070
Query: 1403 GYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
GYT+A FSGRMPC+E+AD+IV+ GR L ++ ++N + AKV+YGDTD
Sbjct: 1071 GYTSASFSGRMPCSEIADTIVETGREILSYSLEYINTLDFCHAKVVYGDTD 1121
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 34/179 (18%)
Query: 15 IVSIDHYMAPPIPGYDICYSSLQGG--KVNEVPVIRVYGSTPAGQKTCLHIHRALPYLYV 72
I ID ++P P YD L ++ VPVIRV+G + C IH PY+YV
Sbjct: 5 IEYIDWELSPCDPAYDFVGKDLPTANEELTTVPVIRVFGLNEEAETVCCFIHNVFPYIYV 64
Query: 73 PCA--------DIPVQLRQEDDGYMHAISLA----------------LEKALKVKGSAGS 108
+ ++P L Q +A++LA L K + G +
Sbjct: 65 EYSSFAETLDLEVPDFLSQLQTSINYALALAARANPETYKPAVQSVQLVKGIPFYGYSFC 124
Query: 109 KRQHVHEC--------SLVRAKKGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHL 159
++ + C LV + GA+ +K +Q +ESH+P+LLQF+VD+NLYG + L
Sbjct: 125 FQKFLKICLFSPKNRDRLVDLFRQGAILNKVIQVYESHLPYLLQFMVDHNLYGCAPIDL 183
>sp|P46588|DPOD_CANAX DNA polymerase delta catalytic subunit OS=Candida albicans GN=POL3
PE=3 SV=2
Length = 1038
Score = 191 bits (485), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 142/508 (27%), Positives = 240/508 (47%), Gaps = 62/508 (12%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDSINVVALAFENDSDHAVEIYVLLYCKSESHQRSLVGI 1016
L +LS +++ R + P+ +D + +A + + + + + S S++G
Sbjct: 244 LRILSFDIECAGRKGVFPEAEHDPVIQIANVVQKSGESKPFVRNVFTVNTCS---SIIG- 299
Query: 1017 PDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISR 1076
++F +E + H+ + + DPD+++G++ + ++ RA LG LND
Sbjct: 300 --SQIFEHQREEDMLMHWKEFITKVDPDVIIGYNTANFDIPYVLNRAKALG---LNDF-- 352
Query: 1077 TPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDE-WGRTHASGLHVGGRIV 1135
P ++ EI KDA+ +G +++ GR+
Sbjct: 353 -PFFGRLKRVKQEI---------------------KDAVFSSRAYGTRENKVVNIDGRMQ 390
Query: 1136 LNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGR 1195
L++ + ++ E KL YT+ +V+ L + + ++T +G R R Y +
Sbjct: 391 LDLLQFIQREYKLRSYTLNSVSAHFLGEQKEDVQHSIITD-LQNGTKETRRRLAVYCLKD 449
Query: 1196 AKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGN 1255
A L L ++++L + +E+ARV G+ F +LSRG Q +V S L R ++ + P
Sbjct: 450 AFLPLRLLDKLMCLVNYTEMARVTGVPFSYLLSRGQQIKVISQLFRKCLQED--IVIPNL 507
Query: 1256 HQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKEN 1315
S E V+EPE G+Y P+ LDF SLYPS+M+A+NLC+ T L K +
Sbjct: 508 KSEGSNEEYEG-ATVIEPERGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLNK---NSIK 563
Query: 1316 TLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKK 1375
G++ +D+ PNG +V +RKG+LP +L+E+L+ R K +KK
Sbjct: 564 AFGLT------------EDDYTKTPNGDYFVHSNLRKGILPTILDELLTARKKAKADLKK 611
Query: 1376 LAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAIS 1435
+ + N RQLALK+ AN YG+T A G++PC ++ S+ GR +EK +
Sbjct: 612 --ETDPFKKDVLNGRQLALKISANSVYGFTGATV-GKLPCLAISSSVTAFGREMIEKTKN 668
Query: 1436 FVNE------NEKWKAKVIYGDTDRYTV 1457
V E + AKVIYGDTD V
Sbjct: 669 EVQEYYSKKNGHPYDAKVIYGDTDSVMV 696
>sp|P15436|DPOD_YEAST DNA polymerase delta catalytic subunit OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=POL3 PE=1 SV=4
Length = 1097
Score = 188 bits (478), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 144/512 (28%), Positives = 238/512 (46%), Gaps = 69/512 (13%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDSI----NVVALAFENDSDHAVEIYVLLYCKSESHQRS 1012
L ++S +++ R + P+P YD + NVV++A ++ L C
Sbjct: 315 LRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKP-FIRNVFTLNTCSP------ 367
Query: 1013 LVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLN 1072
I +F + E + S++ + DPD+++G++ + +L RA L + N
Sbjct: 368 ---ITGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKV---N 421
Query: 1073 DISRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGG 1132
D P ++ EI E S+ + A +G +++ G
Sbjct: 422 DF---PYFGRLKTVKQEIKE---------------SVFSSKA-----YGTRETKNVNIDG 458
Query: 1133 RIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYV 1192
R+ L++ + ++ E KL YT+ AV+ L + + + +++ +G R R Y
Sbjct: 459 RLQLDLLQFIQREYKLRSYTLNAVSAHFLGEQKEDVHYSIISD-LQNGDSETRRRLAVYC 517
Query: 1193 VGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAIS 1252
+ A L L +M +L + +E+ARV G+ F +L+RG Q +V S L R + +
Sbjct: 518 LKDAYLPLRLMEKLMALVNYTEMARVTGVPFSYLLARGQQIKVVSQLFRKCLEID--TVI 575
Query: 1253 PGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPS 1312
P AS E V+EP G+Y P+ LDF SLYPS+M+A+NLC+ T K
Sbjct: 576 PNMQSQASDDQYEG-ATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVE 634
Query: 1313 KENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQA 1372
+ N + ++ +I PNG +V K R+G+LP +L+E++S R K+A
Sbjct: 635 RLNL--------------KIDEDYVITPNGDYFVTTKRRRGILPIILDELISAR---KRA 677
Query: 1373 IKKLAPSQQILHR-IFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLE 1431
K L + R + N RQLALK+ AN YG+T A G++PC ++ S+ GR+ +
Sbjct: 678 KKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATV-GKLPCLAISSSVTAYGRTMIL 736
Query: 1432 KAISFVNEN------EKWKAKVIYGDTDRYTV 1457
K + V E K A V+YGDTD V
Sbjct: 737 KTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMV 768
>sp|P30315|DPOD1_PLAFK DNA polymerase delta catalytic subunit OS=Plasmodium falciparum
(isolate K1 / Thailand) GN=POLD1 PE=3 SV=1
Length = 1094
Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 138/469 (29%), Positives = 214/469 (45%), Gaps = 66/469 (14%)
Query: 998 IYVLLYCKSESHQRSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLG 1057
I+ LL C S IP V + E L + + + DPD L G++I L
Sbjct: 348 IFTLLECAS---------IPGSNVIWFNDEKTLLEAWNEFIIRIDPDFLTGYNIINFDLP 398
Query: 1058 FLAERAAHLGIGLLNDISRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIE 1117
++ R L + L + R + DS S +
Sbjct: 399 YILNRGTALNLKKLKFLGRIKNVAS-TVKDSSFSSK------------------------ 433
Query: 1118 DEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWF 1177
++G +++ GRI +V+ L++ + KL YT+ V+ L+ + + + ++
Sbjct: 434 -QFGTHETKEINIFGRIQFDVYDLIKRDYKLKSYTLNYVSFEFLKEQKEDVHYSIMNDLQ 492
Query: 1178 ASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVES 1237
P +R R Y + L L ++++L I E+ARV G F +L+RG Q +V S
Sbjct: 493 NESP-ESRKRIATYCIKDGVLPLRLIDKLLFIYNYVEMARVTGTPFVYLLTRGQQIKVTS 551
Query: 1238 MLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIA 1297
L R NY + P + + V+EP G+Y +P+ LDF SLYPS+MIA
Sbjct: 552 QLYRKCKELNY--VIPSTYMKVNTNEKYEGATVLEPIKGYYIEPISTLDFASLYPSIMIA 609
Query: 1298 YNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIP---PNGVMYVPPKVRKGV 1354
+NLC+ T + K N H + DL+++ + N + +V V+KG+
Sbjct: 610 HNLCYSTLI------KSN-----------HEVSDLQNDDITTIQGKNNLKFVKKNVKKGI 652
Query: 1355 LPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMP 1414
LP ++EE++ R VK IK I + N RQLALK+ AN YGYT A G++P
Sbjct: 653 LPLIVEELIEARKKVKLLIKN--EKNNITKMVLNGRQLALKISANSVYGYTGASSGGQLP 710
Query: 1415 CAELADSIVQCGRSTLEKAI----SFVNENEKWK--AKVIYGDTDRYTV 1457
C E+A SI GRS +EK SF ++ ++ + VIYGDTD V
Sbjct: 711 CLEVAVSITTLGRSMIEKTKERVESFYCKSNGYEHNSTVIYGDTDSVMV 759
>sp|Q9LVN7|DPOD1_ARATH DNA polymerase delta catalytic subunit OS=Arabidopsis thaliana
GN=POLD1 PE=2 SV=2
Length = 1095
Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 150/512 (29%), Positives = 242/512 (47%), Gaps = 73/512 (14%)
Query: 959 LLSIEVQAESRGDLRPDPRYDSI----NVVALAFENDSDHAVEIYVLLYCKSESHQRSLV 1014
+LS +++ R P+ ++D + N+V L E D + L C +V
Sbjct: 308 VLSFDIECAGRKGHFPEAKHDPVIQIANLVTLQGE-DHPFVRNVMTLKSCAP------IV 360
Query: 1015 GIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDI 1074
G+ D F +E+ L + ++ DPDI++G++I L +L ERAA LGI +
Sbjct: 361 GV-DVMSFETEREVLL--AWRDLIRDVDPDIIIGYNICKFDLPYLIERAATLGIEEFPLL 417
Query: 1075 SRTPLESKIAAGDSEISER--GITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGG 1132
R S++ DS S R GI + +K+ IE G
Sbjct: 418 GRVK-NSRVRVRDSTFSSRQQGIRE-------------SKETTIE--------------G 449
Query: 1133 RIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYV 1192
R ++ + + + KL+ Y++ +V+ L + + ++T +G R R Y
Sbjct: 450 RFQFDLIQAIHRDHKLSSYSLNSVSAHFLSEQKEDVHHSIITD-LQNGNAETRRRLAVYC 508
Query: 1193 VGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAIS 1252
+ A L ++++L I E+ARV G+ +L+RG +V S LLR +N +
Sbjct: 509 LKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLARGQSIKVLSQLLRKGKQKNL--VL 566
Query: 1253 PGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPS 1312
P Q S+ V+E +GFY P+ LDF SLYPS+M+AYNLC+CT + P
Sbjct: 567 PNAKQSGSEQGTYEGATVLEARTGFYEKPIATLDFASLYPSIMMAYNLCYCTL---VTPE 623
Query: 1313 KENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQA 1372
L + P HV + P+G +V ++KG+LP +LEE+L+ R K+A
Sbjct: 624 DVRKLNL----PPEHVTK--------TPSGETFVKQTLQKGILPEILEELLTAR---KRA 668
Query: 1373 IKKLAPSQQILHR-IFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLE 1431
L ++ L + + + RQLALK+ AN YG+T A G++PC E++ S+ GR +E
Sbjct: 669 KADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATV-GQLPCLEISSSVTSYGRQMIE 727
Query: 1432 KAISFVNEN------EKWKAKVIYGDTDRYTV 1457
+ V + ++ A+VIYGDTD V
Sbjct: 728 QTKKLVEDKFTTLGGYQYNAEVIYGDTDSVMV 759
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 29/162 (17%)
Query: 33 YSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPYLYVPC-------------ADIPV 79
+ L G + P+IR++G T G C +H PY Y+ C +
Sbjct: 110 HKELLPGSSGQAPIIRMFGVTREGNSVCCFVHGFEPYFYIACPPGMGPDDISNFHQSLEG 169
Query: 80 QLRQEDDG-----YMHAISLALEKALKVKGSAGSK---RQHVHECSLVRAKKG----GAV 127
++R+ + ++ I + ++++ S+ + V ++V + +G G
Sbjct: 170 RMRESNKNAKVPKFVKRIEMVQKRSIMYYQQQKSQTFLKITVALPTMVASCRGILDRGLQ 229
Query: 128 FD----KSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFR 165
D KS Q +ES+I F+L+F+VD ++ G + + K++
Sbjct: 230 IDGLGMKSFQTYESNILFVLRFMVDCDIVGGNWIEVPTGKYK 271
>sp|P54358|DPOD1_DROME DNA polymerase delta catalytic subunit OS=Drosophila melanogaster
GN=DNApol-delta PE=2 SV=2
Length = 1092
Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 143/514 (27%), Positives = 236/514 (45%), Gaps = 70/514 (13%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDSINVVALAFENDSDHAVEIYVLLYCKSESHQRSLVGI 1016
+LS +++ R + P+ + D + +A V+ + E R++ +
Sbjct: 294 FRILSFDIECAGRKGIFPEAKIDPVIQIANM------------VIRQGEREPFIRNVFTL 341
Query: 1017 PDC------KVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGL 1070
+C +V KE + + + DPDIL G++I +L RAAHL +
Sbjct: 342 NECAPIIGSQVLCHDKETQMLDKWSAFVREVDPDILTGYNINNFDFPYLLNRAAHLKVRN 401
Query: 1071 LNDISRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHV 1130
+ R N+ + V+ E +L + GR ++
Sbjct: 402 FEYLGRI-------------------KNIRS--VIKEQMLQSK-----QMGRRENQYVNF 435
Query: 1131 GGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVE 1190
GR+ ++ ++ + KL YT+ AV+ L+ + + ++T +G + R R
Sbjct: 436 EGRVPFDLLFVLLRDYKLRSYTLNAVSYHFLQEQKEDVHHSIITD-LQNGDEQTRRRLAM 494
Query: 1191 YVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLA 1250
Y + A L L ++ +L I E+ARV G+ S+L+RG Q +V S LLR A T+ +
Sbjct: 495 YCLKDAYLPLRLLEKLMAIVNYMEMARVTGVPLESLLTRGQQIKVLSQLLRKAKTKGF-- 552
Query: 1251 ISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKIL 1310
I P S E V+EP+ G+YADP+ LDF SLYPS+M+A+NLC+
Sbjct: 553 IMPSYTSQGSDEQYEG-ATVIEPKRGYYADPISTLDFASLYPSIMMAHNLCY-------- 603
Query: 1311 PSKENTLGVSSFRPDLHVLRDLKDELL-IPPNGVMYVPPKVRKGVLPRLLEEILSTRIMV 1369
TL + R L +L+D+ + P +V +VR+G+LP +LE +L+ R
Sbjct: 604 ----TTLVLGGTREKLRQQENLQDDQVERTPANNYFVKSEVRRGLLPEILESLLAARKRA 659
Query: 1370 KQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRST 1429
K +K + ++ + RQLALK+ AN YG+T A G++PC E++ S+ GR+
Sbjct: 660 KNDLK--VETDPFKRKVLDGRQLALKISANSVYGFTGAQV-GKLPCLEISGSVTAYGRTM 716
Query: 1430 LEKAISFVNENEKW------KAKVIYGDTDRYTV 1457
+E + V + A VIYGDTD V
Sbjct: 717 IEMTKNEVESHYTQANGYENNAVVIYGDTDSVMV 750
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/298 (19%), Positives = 113/298 (37%), Gaps = 61/298 (20%)
Query: 6 PDSNIFSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHR 65
P + + + +++Y+ P+PG + G ++ VPV+R++G T G C H+H
Sbjct: 71 PSKHNLEFQQLDVENYLGQPLPG-------MPGAQIGPVPVVRMFGVTMEGNSVCCHVHG 123
Query: 66 ALPYLYVPC-----------------ADIPVQLRQEDDGYMHAISLA-LEKALKVKGSAG 107
PY Y+ + +R D A+ + L + L + G G
Sbjct: 124 FCPYFYIEAPSQFEEHHCEKLQKALDQKVIADIRNNKDNVQEAVLMVELVEKLNIHGYNG 183
Query: 108 SKRQHVHECSLV---------RAKKGGAVFD----KSLQPHESHIPFLLQFLVDYNLYG- 153
K+Q + S+ R K + + + E++I F ++F+VD ++ G
Sbjct: 184 DKKQRYIKISVTLPRFVAAASRLLKKEVIMSEIDFQDCRAFENNIDFDIRFMVDTDVVGC 243
Query: 154 ------MGHLHLSKLKFRHPVP--------DAFFPRKFNYSSKQASADFQVIGCGSYPMH 199
MGH + P+P D F R + S + ++ + P
Sbjct: 244 NWIELPMGHWRIRN-SHSKPLPESRCQIEVDVAFDR---FISHEPEGEWSKVA----PFR 295
Query: 200 LMGHQIKTLSGLNIKVFLSLKEMLQWMVCLIHCSATDIFASSIFLYDDCVGDIVNQRL 257
++ I+ I + ++Q +I + F ++F ++C I +Q L
Sbjct: 296 ILSFDIECAGRKGIFPEAKIDPVIQIANMVIRQGEREPFIRNVFTLNECAPIIGSQVL 353
>sp|P52431|DPOD1_MOUSE DNA polymerase delta catalytic subunit OS=Mus musculus GN=Pold1 PE=1
SV=2
Length = 1105
Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 147/506 (29%), Positives = 232/506 (45%), Gaps = 67/506 (13%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDS-INVVALAFE-NDSDHAVEIYVLLYCKSESHQRSLV 1014
L +LS +++ R + P+P D I + +L + + + + + L R
Sbjct: 308 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL--------RPCA 359
Query: 1015 GIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDI 1074
I KV +E L + + + DPD++ G++IQ L +L RA L +
Sbjct: 360 PILGAKVQSYEREEDLLQAWADFILAMDPDVITGYNIQNFDLPYLISRAQAL------KV 413
Query: 1075 SRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRI 1134
R P ++ S I + + GR + + + GR+
Sbjct: 414 DRFPFLGRVTGLRSNIRDSSFQSRQV--------------------GRRDSKVISMVGRV 453
Query: 1135 VLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVG 1194
+++ +++ E KL YT+ AV+ L + + ++T +G + R R Y +
Sbjct: 454 QMDMLQVLLREHKLRSYTLNAVSFHFLGEQKEDVQHSIITD-LQNGNEQTRRRLAVYCLK 512
Query: 1195 RAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPG 1254
A L L ++ +L ++ E+ARV G+ +L+RG Q +V S LLR A Q L P
Sbjct: 513 DAFLPLRLLERLMVLVNNVEMARVTGVPLGYLLTRGQQVKVVSQLLRQAMRQGLLM--PV 570
Query: 1255 NHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKE 1314
S+ V+EP G+Y P+ LDF SLYPS+M+A+NLC+ T L P
Sbjct: 571 VKTEGSEDYTGAT--VIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLR---PGAA 625
Query: 1315 NTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIK 1374
LG+ DE + P G +V VRKG+LP++LE +LS R K+A
Sbjct: 626 QKLGLKP------------DEFIKTPTGDEFVKSSVRKGLLPQILENLLSAR---KRAKA 670
Query: 1375 KLAPSQQILHR-IFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKA 1433
+LA L R + + RQLALK+ AN YG+T A G++PC E++ S+ GR +EK
Sbjct: 671 ELAQETDPLRRQVLDGRQLALKVSANSVYGFTGAQV-GKLPCLEISQSVTGFGRQMIEKT 729
Query: 1434 ISFVNENEKWK------AKVIYGDTD 1453
V + AKV+YGDTD
Sbjct: 730 KQLVESKYTVENGYDANAKVVYGDTD 755
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 50/197 (25%)
Query: 6 PDSNIFSVRIVSIDHYM--APPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHI 63
P + + + IDHY+ APP+P + N VP++R +G T G C HI
Sbjct: 87 PSTEPLIFQQLEIDHYVGSAPPLPEGPL-------PSRNSVPILRAFGVTDEGFSVCCHI 139
Query: 64 HRALPYLYVPC-----ADIPVQLRQEDD------------------------------GY 88
PY Y P A+ +L+QE + GY
Sbjct: 140 QGFAPYFYTPAPPGFGAEHLSELQQELNAAISRDQRGGKELSGPAVLAIELCSRESMFGY 199
Query: 89 M-HAISLALEKALKVKGSAGSKRQHVHECSLVRAKKGGAVFDKSLQPHESHIPFLLQFLV 147
H S L L + R+ + + VR G S P+E+++ F ++F+V
Sbjct: 200 HGHGPSPFLRITLALPRLMAPARRLLEQG--VRVPGLGT---PSFAPYEANVDFEIRFMV 254
Query: 148 DYNLYGMGHLHLSKLKF 164
D ++ G L L K+
Sbjct: 255 DADIVGCNWLELPAGKY 271
>sp|P97283|DPOD1_MESAU DNA polymerase delta catalytic subunit OS=Mesocricetus auratus
GN=POLD1 PE=2 SV=1
Length = 1103
Score = 181 bits (458), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 147/509 (28%), Positives = 231/509 (45%), Gaps = 73/509 (14%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDS-INVVALAFE-NDSDHAVEIYVLLYCKSESHQRSLV 1014
L +LS +++ R + P+P D I + +L + + + + + L R
Sbjct: 306 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL--------RPCA 357
Query: 1015 GIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDI 1074
I KV +E L + + + DPD++ G++IQ L +L RA L +
Sbjct: 358 PILGAKVQSYEREEDLLQAWPNFILAMDPDVITGYNIQNFDLPYLISRAQTL------KV 411
Query: 1075 SRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRI 1134
R P ++ S I + + GR + + + GR+
Sbjct: 412 DRFPFLGRVTGLRSNIRDSSFQSRQV--------------------GRRDSKVVSMVGRV 451
Query: 1135 VLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVG 1194
+++ +++ E KL YT+ AV+ L + + ++T +G + R R Y +
Sbjct: 452 QMDMLQVLLREHKLRSYTLNAVSFHFLGEQKEDVQHSIITD-LQNGNEQTRRRLAVYCLR 510
Query: 1195 RAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYL---AI 1251
A L L ++ +L ++ E+ARV G+ +LSRG Q +V S LLR A Q L
Sbjct: 511 DAFLPLRLLERLMVLVNNVEMARVTGVPLGYLLSRGQQVKVVSQLLRQAMRQGLLMPVVK 570
Query: 1252 SPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILP 1311
+ G V+EP G+Y P+ LDF SLYPS+M+A+NLC+ T L P
Sbjct: 571 TEGGEDYTGA-------TVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLL---RP 620
Query: 1312 SKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQ 1371
LG+ DE + P G +V VRKG+LP++LE +LS R K+
Sbjct: 621 GAAQKLGLKP------------DEFIKTPTGDEFVKSSVRKGLLPQILENLLSAR---KR 665
Query: 1372 AIKKLAPSQQILHR-IFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTL 1430
A +LA L R + + RQLALK+ AN YG+T A G++PC E++ S+ GR +
Sbjct: 666 AKAELAQETDPLRRQVLDGRQLALKVSANSVYGFTGAEV-GKLPCLEISQSVTGFGRQMI 724
Query: 1431 EKAISFVNENEKWK------AKVIYGDTD 1453
EK V + AKV+YGDTD
Sbjct: 725 EKTKQLVESKYTLENGYNANAKVVYGDTD 753
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 75/198 (37%), Gaps = 52/198 (26%)
Query: 6 PDSNIFSVRIVSIDHYMAPPIPGYDICYSSLQGG---KVNEVPVIRVYGSTPAGQKTCLH 62
P++ + + IDHY+ +P L GG N VP++R +G T G C H
Sbjct: 85 PNTEPLIFQQLEIDHYVGSAVP--------LPGGPPTSCNSVPILRAFGVTDEGFSVCCH 136
Query: 63 IHRALPYLYVPC---------------------------------ADIPVQL--RQEDDG 87
IH PY Y P A + ++L R+ G
Sbjct: 137 IHGFAPYFYTPAPPGFGAEHLSDLQRELSTAISRDQRGGKELSGPAVLAIELCSRESMFG 196
Query: 88 YM-HAISLALEKALKVKGSAGSKRQHVHECSLVRAKKGGAVFDKSLQPHESHIPFLLQFL 146
Y H S L L + R+ + + +R G S P+E+++ F ++F+
Sbjct: 197 YHGHGPSPFLRITLALPRLVAPARRLLEQG--IRVPGLGT---PSFAPYEANVDFEIRFM 251
Query: 147 VDYNLYGMGHLHLSKLKF 164
VD ++ G L L K+
Sbjct: 252 VDADIVGCNWLELPAGKY 269
>sp|P30316|DPOD_SCHPO DNA polymerase delta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pol3 PE=1 SV=2
Length = 1086
Score = 181 bits (458), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 145/507 (28%), Positives = 238/507 (46%), Gaps = 59/507 (11%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDSINVVALAFENDSDHAVEIYVLLYCKSESHQRSLVGI 1016
L ++S +++ R + PDP D + +A D + ++C Q +VG
Sbjct: 294 LRIMSFDIECAGRKGVFPDPSIDPVIQIASIVTQYGD-STPFVRNVFCVDTCSQ--IVG- 349
Query: 1017 PDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISR 1076
+V+ + + S + K + DPD+L+G++I + +L +RA L I
Sbjct: 350 --TQVYEFQNQAEMLSSWSKFVRDVDPDVLIGYNICNFDIPYLLDRAKSL------RIHN 401
Query: 1077 TPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVL 1136
PL +I N + V E+ + A +G + + GR+ L
Sbjct: 402 FPLLGRI-------------HNFFS--VAKETTFSSKA-----YGTRESKTTSIPGRLQL 441
Query: 1137 NVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRA 1196
++ ++M+ + KL Y++ AV L + + + ++T +G +R R Y + A
Sbjct: 442 DMLQVMQRDFKLRSYSLNAVCSQFLGEQKEDVHYSIITD-LQNGTADSRRRLAIYCLKDA 500
Query: 1197 KLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNH 1256
L +M++L +E+ARV G+ F +L+RG Q +V S L R A Q+ L + N
Sbjct: 501 YLPQRLMDKLMCFVNYTEMARVTGVPFNFLLARGQQIKVISQLFRKA-LQHDLVVP--NI 557
Query: 1257 QVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENT 1316
+V V+EP G+Y P+ LDF SLYPS+M A+NLC+ T L NT
Sbjct: 558 RVNGTDEQYEGATVIEPIKGYYDTPIATLDFSSLYPSIMQAHNLCYTTLL------DSNT 611
Query: 1317 LGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKL 1376
+ + D+ + + PNG +V P VRKG+LP +L ++L+ R K +KK
Sbjct: 612 AELLKLKQDV--------DYSVTPNGDYFVKPHVRKGLLPIILADLLNARKKAKADLKK- 662
Query: 1377 APSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISF 1436
+ + + RQLALK+ AN YG+T A +GR+PC ++ S+ GR +EK
Sbjct: 663 -ETDPFKKAVLDGRQLALKVSANSVYGFTGAT-NGRLPCLAISSSVTSYGRQMIEKTKDV 720
Query: 1437 VNENEKWK------AKVIYGDTDRYTV 1457
V + + + A VIYGDTD V
Sbjct: 721 VEKRYRIENGYSHDAVVIYGDTDSVMV 747
>sp|P28339|DPOD1_BOVIN DNA polymerase delta catalytic subunit OS=Bos taurus GN=POLD1 PE=1
SV=1
Length = 1106
Score = 181 bits (458), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 153/512 (29%), Positives = 238/512 (46%), Gaps = 79/512 (15%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDS-INVVALAFE-NDSDHAVEIYVLLYCKSESHQRSLV 1014
L +LS +++ R + P+P D I + +L + + + + + L R
Sbjct: 309 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL--------RPCA 360
Query: 1015 GIPDCKVFVCSKE---IHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLL 1071
I KV +E + +S FI+I+ DPD++ G++IQ L +L RA L
Sbjct: 361 PILGAKVQSYEREEDLLQAWSTFIRIM---DPDVITGYNIQNFDLPYLISRAQTL----- 412
Query: 1072 NDISRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVG 1131
+ PL ++ S I E + GR + + +
Sbjct: 413 -KVPGFPLLGRVIGLRSNIRESSFQSR--------------------QTGRRDSKVVSMV 451
Query: 1132 GRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEY 1191
GR+ +++ +++ E KL YT+ AV+ L + + ++T +G + R R Y
Sbjct: 452 GRVQMDMLQVLLREYKLRSYTLNAVSFHFLGEQKEDVQHSIITD-LQNGNDQTRRRLAVY 510
Query: 1192 VVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYL-- 1249
+ A L L ++ +L ++ E+ARV G+ +LSRG Q +V S LLR A Q L
Sbjct: 511 CLKDAFLPLRLLERLMVLVNAMEMARVTGVPLGYLLSRGQQVKVVSQLLRQAMRQGLLMP 570
Query: 1250 -AISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGK 1308
+ G V+EP G+Y P+ LDF SLYPS+M+A+NLC+ T L
Sbjct: 571 VVKTEGGEDYTGA-------TVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLL-- 621
Query: 1309 ILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIM 1368
P LG++ +D+ + P G +V VRKG+LP++LE +LS R
Sbjct: 622 -RPGAAQKLGLT------------EDQFIKTPTGDEFVKASVRKGLLPQILENLLSAR-- 666
Query: 1369 VKQAIKKLAPSQQILHR-IFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGR 1427
K+A +LA L R + + RQLALK+ AN YG+T A GR+PC E++ S+ GR
Sbjct: 667 -KRAKAELAKETDPLRRQVLDGRQLALKVSANSVYGFTGAQV-GRLPCLEISQSVTGFGR 724
Query: 1428 STLEKAISFVN-----EN-EKWKAKVIYGDTD 1453
+EK V EN AKV+YGDTD
Sbjct: 725 QMIEKTKQLVETKYTVENGYSTSAKVVYGDTD 756
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 76/200 (38%), Gaps = 52/200 (26%)
Query: 3 DSQPDSNIFSVRIVSIDHYMAP--PIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTC 60
D Q + IF + IDHY+AP P+PG + VP++R +G T G C
Sbjct: 87 DPQMEPLIFQQ--LEIDHYVAPARPLPGAP-------PPSQDSVPILRAFGVTNEGVSVC 137
Query: 61 LHIHRALPYLYVPC---------------------------------ADIPVQL--RQED 85
HIH PY Y P A + V+L R+
Sbjct: 138 CHIHGFAPYFYTPAPPGFGPEHLSELQRELSAAISRDQRGGKELTGPAVLAVELCSRESM 197
Query: 86 DGYM-HAISLALEKALKVKGSAGSKRQHVHECSLVRAKKGGAVFDKSLQPHESHIPFLLQ 144
GY H S L L + R+ + + + + S P+E+++ F ++
Sbjct: 198 FGYHGHGPSPFLRITLALPRLMAPARRLLEQ-----GIRLAGLGTPSFAPYEANVDFEIR 252
Query: 145 FLVDYNLYGMGHLHLSKLKF 164
F+VD ++ G L L K+
Sbjct: 253 FMVDTDIVGCNWLELPAGKY 272
>sp|O48901|DPOD1_SOYBN DNA polymerase delta catalytic subunit OS=Glycine max GN=POLD1 PE=2
SV=1
Length = 1088
Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 149/511 (29%), Positives = 242/511 (47%), Gaps = 71/511 (13%)
Query: 959 LLSIEVQAESRGDLRPDPRYDSI----NVVALAFENDSDHAVEIYVLLYCKSESHQRSLV 1014
+LS +++ R P+P +D + N+V L E D + L C +V
Sbjct: 273 ILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGE-DQPFIRNVMTLKSCSP------IV 325
Query: 1015 GIPDCKVFVCSKEIHL-FSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLND 1073
G+ D F +E+ L + FI+ DPDI++G++I L +L ERA +L I
Sbjct: 326 GV-DVMPFETEREVLLAWRDFIR---EVDPDIIIGYNICKFDLPYLIERALNLKIAEFPI 381
Query: 1074 ISRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGR 1133
+ R S++ D+ S R ++G + + V GR
Sbjct: 382 LGRIR-NSRVRVKDTTFSSR-------------------------QYGTRESKEVAVEGR 415
Query: 1134 IVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVV 1193
+ ++ ++M+ + KL+ Y++ +V+ L + + +++ +G R R Y +
Sbjct: 416 VTFDLLQVMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISD-LQNGNAETRRRLAVYCL 474
Query: 1194 GRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISP 1253
A L ++++L I E+ARV G+ +LSRG +V S LLR A +N + P
Sbjct: 475 KDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRRARQKNL--VIP 532
Query: 1254 GNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSK 1313
Q S+ V+E +GFY P+ LDF SLYPS+M+AYNLC+CT ++P
Sbjct: 533 NAKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTL---VIPED 589
Query: 1314 ENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAI 1373
L + P V R P+G +V ++KG+LP +LEE+L+ R K+A
Sbjct: 590 ARKLNI----PPESVNRT--------PSGETFVKSNLQKGILPEILEELLTAR---KRAK 634
Query: 1374 KKLAPSQQILHR-IFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEK 1432
L ++ L + + + RQLALK+ AN YG+T A G++PC E++ S+ GR +E
Sbjct: 635 ADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATI-GQLPCLEISSSVTSYGRQMIEH 693
Query: 1433 AISFVNEN------EKWKAKVIYGDTDRYTV 1457
V + + A+VIYGDTD V
Sbjct: 694 TKKLVEDKFTTLNGYEHNAEVIYGDTDSVMV 724
Score = 37.4 bits (85), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 29/151 (19%)
Query: 44 VPVIRVYGSTPAGQKTCLHIHRALPYLYVPC-----ADIPVQLRQEDDG----------- 87
V +IR++G T G C ++H PY Y+ C D Q +G
Sbjct: 86 VAIIRIFGVTKEGHSVCCNVHGFEPYFYICCPPGMGPDDISHFHQTLEGRMREANRNSNV 145
Query: 88 --YMHAISLALEKALKVKGSAGSK---RQHVHECSLVRAKKG----GAVFD----KSLQP 134
++ I + +++ + S+ + V ++V + +G G D KS
Sbjct: 146 GKFVRRIEMVQRRSIMYYQQSNSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFLT 205
Query: 135 HESHIPFLLQFLVDYNLYGMGHLHLSKLKFR 165
+ES++ F L+F++D N+ G + + K++
Sbjct: 206 YESNVLFALRFMIDCNIVGGNWIGIPAGKYK 236
>sp|O54747|DPOD1_RAT DNA polymerase delta catalytic subunit OS=Rattus norvegicus GN=Pold1
PE=2 SV=1
Length = 1103
Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 145/509 (28%), Positives = 230/509 (45%), Gaps = 73/509 (14%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDS-INVVALAFE-NDSDHAVEIYVLLYCKSESHQRSLV 1014
L +LS +++ R + P+P D I + +L + + + + + L R
Sbjct: 306 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL--------RPCA 357
Query: 1015 GIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDI 1074
I KV +E L + + + DPD++ G++IQ L +L RA L +
Sbjct: 358 PILGAKVQSYEREEDLLQAWATFILAMDPDVITGYNIQNFDLPYLISRAQTL------KV 411
Query: 1075 SRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRI 1134
R P ++ S I + + GR + + + GR+
Sbjct: 412 DRFPFLGRVTGLRSNIRDSSFQSRQV--------------------GRRDSKVVSMVGRV 451
Query: 1135 VLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVG 1194
+++ +++ E KL YT+ AV+ L + + ++T +G + R R Y +
Sbjct: 452 QMDMLQVLLREYKLRSYTLNAVSFHFLGEQKEDVQHSIITD-LQNGNEQTRRRLAVYCLK 510
Query: 1195 RAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYL---AI 1251
A L L ++ +L ++ E+ARV G+ +LSRG Q +V S LLR A + L
Sbjct: 511 DAFLPLRLLERLMVLVNNVEMARVTGVPLGYLLSRGQQVKVVSQLLRQAMREGLLMPVVK 570
Query: 1252 SPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILP 1311
+ G V+EP G+Y P+ LDF SLYPS+M+A+NLC+ T L P
Sbjct: 571 TEGGEDYTGA-------TVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLR---P 620
Query: 1312 SKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQ 1371
LG+ DE + P G +V VRKG+LP++LE +LS R K+
Sbjct: 621 GAAQKLGLKP------------DEFIKTPTGDEFVKASVRKGLLPQILENLLSAR---KR 665
Query: 1372 AIKKLAPSQQILHR-IFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTL 1430
A +LA L R + + RQLALK+ N YG+T A G++PC E++ S+ GR +
Sbjct: 666 AKAELAQETDPLRRQVLDGRQLALKVSPNSVYGFTGAQV-GKLPCLEISQSVTGFGRQMI 724
Query: 1431 EKAISFVNENEKWK------AKVIYGDTD 1453
EK V + AKV+YGDTD
Sbjct: 725 EKTKQLVETKYTLENGYDANAKVVYGDTD 753
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 76/199 (38%), Gaps = 54/199 (27%)
Query: 6 PDSNIFSVRIVSIDHYM--APPIPGYDICYSSLQG--GKVNEVPVIRVYGSTPAGQKTCL 61
P + + + IDHY+ +PP+P +G N VP++R +G T G C
Sbjct: 85 PSTEPLIFQQLEIDHYVGTSPPLP---------EGPPASRNSVPILRAFGVTDEGFSVCC 135
Query: 62 HIHRALPYLYVPC---------------------------------ADIPVQL--RQEDD 86
HIH PY Y P A + ++L R+
Sbjct: 136 HIHGFAPYFYTPAPPGFGAEHLSELQRELNAAISRDQRGGKELSGPAVLAIELCSRESMF 195
Query: 87 GYM-HAISLALEKALKVKGSAGSKRQHVHECSLVRAKKGGAVFDKSLQPHESHIPFLLQF 145
GY H S L L + R+ + + +R G S P+E+++ F ++F
Sbjct: 196 GYHGHGPSPFLRITLALPRLMAPARRLLEQG--IRVPGLGT---PSFAPYEANVDFEIRF 250
Query: 146 LVDYNLYGMGHLHLSKLKF 164
+VD ++ G L L K+
Sbjct: 251 MVDADIVGCNWLELPAGKY 269
>sp|P28340|DPOD1_HUMAN DNA polymerase delta catalytic subunit OS=Homo sapiens GN=POLD1 PE=1
SV=2
Length = 1107
Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 150/512 (29%), Positives = 236/512 (46%), Gaps = 79/512 (15%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDS-INVVALAFE-NDSDHAVEIYVLLYCKSESHQRSLV 1014
L +LS +++ R + P+P D I + +L + + + + + L R
Sbjct: 310 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL--------RPCA 361
Query: 1015 GIPDCKVFVCSKE---IHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLL 1071
I KV KE + +S FI+I+ DPD++ G++IQ L +L RA L
Sbjct: 362 PILGAKVQSYEKEEDLLQAWSTFIRIM---DPDVITGYNIQNFDLPYLISRAQTL----- 413
Query: 1072 NDISRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVG 1131
+ P ++A S I + + GR + +
Sbjct: 414 -KVQTFPFLGRVAGLCSNIRDSSFQSK--------------------QTGRRDTKVVSMV 452
Query: 1132 GRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEY 1191
GR+ +++ +++ E KL YT+ AV+ L + + ++T +G + R R Y
Sbjct: 453 GRVQMDMLQVLLREYKLRSYTLNAVSFHFLGEQKEDVQHSIITD-LQNGNDQTRRRLAVY 511
Query: 1192 VVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYL-- 1249
+ A L L ++ +L ++ E+ARV G+ +LSRG Q +V S LLR A + L
Sbjct: 512 CLKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLLSRGQQVKVVSQLLRQAMHEGLLMP 571
Query: 1250 -AISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGK 1308
S G V+EP G+Y P+ LDF SLYPS+M+A+NLC+ T L
Sbjct: 572 VVKSEGGEDYTGA-------TVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLL-- 622
Query: 1309 ILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIM 1368
P LG++ +D+ + P G +V VRKG+LP++LE +LS R
Sbjct: 623 -RPGTAQKLGLT------------EDQFIRTPTGDEFVKTSVRKGLLPQILENLLSAR-- 667
Query: 1369 VKQAIKKLAPSQQILHR-IFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGR 1427
K+A +LA L R + + RQLALK+ AN YG+T A G++PC E++ S+ GR
Sbjct: 668 -KRAKAELAKETDPLRRQVLDGRQLALKVSANSVYGFTGAQV-GKLPCLEISQSVTGFGR 725
Query: 1428 STLEKAISFVNENEKWK------AKVIYGDTD 1453
+EK V + AKV+YGDTD
Sbjct: 726 QMIEKTKQLVESKYTVENGYSTSAKVVYGDTD 757
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 3 DSQPDSNIFSVRIVSIDHYMAP--PIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTC 60
D Q + IF + + IDHY+ P P+PG VPV+R +G T G C
Sbjct: 88 DPQTEPLIF--QQLEIDHYVGPAQPVPGGP-------PPSRGSVPVLRAFGVTDEGFSVC 138
Query: 61 LHIHRALPYLYVP 73
HIH PY Y P
Sbjct: 139 CHIHGFAPYFYTP 151
>sp|Q9LRE6|DPOD1_ORYSJ DNA polymerase delta catalytic subunit OS=Oryza sativa subsp.
japonica GN=POLD1 PE=2 SV=1
Length = 1105
Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 149/511 (29%), Positives = 240/511 (46%), Gaps = 71/511 (13%)
Query: 959 LLSIEVQAESRGDLRPDPRYDSI----NVVALAFENDSDHAVEIYVLLYCKSESHQRSLV 1014
+LS +++ R P+P +D + N+V L E + L C +V
Sbjct: 316 ILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEGQP-FVRNVMTLKSCSP------IV 368
Query: 1015 GIPDCKVFVCSKEIHL-FSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLND 1073
G+ D F +++ L + FI+ DPDI++G++I L +L ERA L I
Sbjct: 369 GV-DVMSFDTERDVLLAWRDFIR---EVDPDIIIGYNICKFDLPYLIERAEVLKIVEFPI 424
Query: 1074 ISRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGR 1133
+ R S++ D+ S R ++G + + V GR
Sbjct: 425 LGRIR-NSRVRVRDTTFSSR-------------------------QYGMRESKDVAVEGR 458
Query: 1134 IVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVV 1193
+ ++ + M+ + KL+ Y++ +V+ L + + +++ +G R R Y +
Sbjct: 459 VQFDLLQAMQRDYKLSSYSLNSVSAHFLGEQKEDVHHSIISD-LQNGNSETRRRLAVYCL 517
Query: 1194 GRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISP 1253
A L ++++L I E+ARV G+ +LSRG +V S LLR A +N L I
Sbjct: 518 KDAYLPQRLLDKLMYIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKN-LVIPN 576
Query: 1254 GNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSK 1313
Q + Q E V+E +GFY P+ LDF SLYPS+M+AYNLC+CT ++P +
Sbjct: 577 IKGQASGQDTFEG-ATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCT----LVPPE 631
Query: 1314 ENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAI 1373
D L + + P+G +V P V+KG+LP +LEE+L+ R K+A
Sbjct: 632 -----------DARKLNLPPESVNKTPSGETFVKPDVQKGILPEILEELLAAR---KRAK 677
Query: 1374 KKLAPSQQILHR-IFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEK 1432
L ++ R + + RQLALK+ AN YG+T A G++PC E++ S+ GR +E
Sbjct: 678 ADLKEAKDPFERAVLDGRQLALKISANSVYGFTGATV-GQLPCLEISSSVTSYGRQMIEH 736
Query: 1433 AISFVNEN------EKWKAKVIYGDTDRYTV 1457
V + + A+VIYGDTD V
Sbjct: 737 TKKLVEDKFTTLGGYEHNAEVIYGDTDSVMV 767
>sp|Q54N97|DPOD1_DICDI DNA polymerase delta catalytic subunit OS=Dictyostelium discoideum
GN=pold1 PE=3 SV=1
Length = 1104
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 145/513 (28%), Positives = 238/513 (46%), Gaps = 78/513 (15%)
Query: 959 LLSIEVQAESRGDLRPDPRYDSINVVALAFENDSDHAVEIYVLLYCKSESHQRSLVGIPD 1018
+LS +++ R + P+P D + ++ +N+ D I + K S S+VG
Sbjct: 317 ILSFDIECAGRKGVFPEPEKDPVIQISNIVKNNGDAEPFIKNIFTLKGCS---SIVG--- 370
Query: 1019 CKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGI---GLLNDIS 1075
V +E L + K + DPD+++G++I + +L RA L I LL I
Sbjct: 371 AHVIPHKREEDLLREWRKFVIKVDPDVIIGYNIVNFDIPYLISRARQLKIPEFALLGRIK 430
Query: 1076 RTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIV 1135
T SKI S R + N+ G + + + GR
Sbjct: 431 TTI--SKIK------STRFSSSNL---------------------GTRESKEISMPGRTQ 461
Query: 1136 LNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGR 1195
++ + ++ + KL Y++ V+ L+ + + F +++ +G R R Y +
Sbjct: 462 FDLMQAIQRDHKLTSYSLNNVSAHFLKEQKEDVHFSIISD-LQNGTDDDRRRLAVYCIKD 520
Query: 1196 AKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGN 1255
A L + ++++L ++ +E+ARV G+ +L RG +V S L R A +N+L +
Sbjct: 521 AVLPMRLLDKLMILINYTEMARVTGVPLSYLLGRGEGIKVLSQLYRKAMVENFLIPT--- 577
Query: 1256 HQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCL----GKILP 1311
++V + +V+EP GFY P+ LDF SLYPS+M+A+NLC+ T L K LP
Sbjct: 578 YKVTGKGEKFQGAIVIEPTPGFYDTPIATLDFTSLYPSIMMAHNLCYSTLLSAEEAKKLP 637
Query: 1312 SKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQ 1371
P+++ P G ++ +KG+LPR+LEE+LS R K+
Sbjct: 638 ------------PEIYT---------TTPFGDHFIKSDTKKGLLPRILEELLSAR---KK 673
Query: 1372 AIKKLAPSQQILHR-IFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTL 1430
A +L + R + + RQLALK+ AN YG+T A G++PC E++ S+ GR L
Sbjct: 674 AKDELKNEKDPFKRAVLDGRQLALKISANSVYGFTGARV-GKLPCLEISRSVTSFGREML 732
Query: 1431 EKAISFVNEN------EKWKAKVIYGDTDRYTV 1457
+K V E K A +IYGDTD V
Sbjct: 733 DKTKKIVEERYTIANGYKHDAVIIYGDTDSVMV 765
Score = 42.0 bits (97), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 66/170 (38%), Gaps = 42/170 (24%)
Query: 25 PIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPYLYVPCA--------- 75
P+PG + G KV +P IR++G T G +H LPY ++ C
Sbjct: 115 PVPG-------MPGPKVGPLPAIRLFGVTKEGNSVLCKVHGFLPYFFISCPPGFTEADCK 167
Query: 76 ----DIPVQLR------QEDDGYMHAISLALEKALKVKGSAGSKRQHVHECSLVRAK--- 122
D+ ++ E D +S+ +EK + G + +L+ K
Sbjct: 168 SLKHDLNESMKMSSNQSNEKDIENIVVSIDIEKKKSIMGYNPNPLSDFIRITLILPKFVT 227
Query: 123 KGGAVFD-------------KSLQPHESHIPFLLQFLVDYNLYGMGHLHL 159
+ +F+ + Q +ES+I F L+FL+D + G + L
Sbjct: 228 RCREIFESGRHHFTIPGQPFRQYQTYESNILFALRFLIDKGITGCSWIEL 277
>sp|P90829|DPOD1_CAEEL DNA polymerase delta catalytic subunit OS=Caenorhabditis elegans
GN=F10C2.4 PE=3 SV=1
Length = 1081
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 138/511 (27%), Positives = 234/511 (45%), Gaps = 74/511 (14%)
Query: 960 LSIEVQAESRGDLRPDPRYDSINVVA--LAFENDSDHAVE-IYVLLYCKSESHQRSLVGI 1016
LS++++ R + P+ D I +A + E +++ V +VL C +VG
Sbjct: 283 LSLDIECIGRRGVFPEAIKDPIIQIANLVKIEGEAEPFVRNCFVLGTCAP------VVG- 335
Query: 1017 PDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISR 1076
+ C E L + + + DPDI+ G++I L ++ +RA L + ++ + R
Sbjct: 336 --SNIIQCVNEKVLLEKWAEFVREVDPDIITGYNILNFDLPYILDRAKVLSLPQVSHLGR 393
Query: 1077 TPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVL 1136
E+G S++ AI + G + + GRI+
Sbjct: 394 Q-------------KEKG-------------SVVRDAAISSKQMGSRVNKSIDIHGRIIF 427
Query: 1137 NVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRA 1196
+V +++ + KL YT+ +V+ L + + ++ G + R R +Y + A
Sbjct: 428 DVLQVVLRDYKLRSYTLNSVSYQFLSEQKEDVEHNIIPD-LQRGDEQTRRRLAQYCLKDA 486
Query: 1197 KLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNY-LAISPGN 1255
L L ++++L I E+ARV G+ +L++G Q ++ SM+LR N+ L + N
Sbjct: 487 YLPLRLLDKLMSIINYIEMARVTGVPMNFLLTKGQQIKILSMMLRRCKQNNFFLPVIEAN 546
Query: 1256 HQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKEN 1315
E V++P GFY +P+ LDF SLYPS+MIA+NLC+ T L ++
Sbjct: 547 S--GDGEGYEG-ATVIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLL-------KS 596
Query: 1316 TLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKK 1375
GV + ++ + P+G + R+G+LP +LE+IL+ R K +K
Sbjct: 597 PQGVEN------------EDYIRTPSGQYFATKSKRRGLLPEILEDILAARKRAKNDMKN 644
Query: 1376 LAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAIS 1435
+ ++N RQLALK+ AN YG+T A G++PC E++ S+ GR ++
Sbjct: 645 --EKDEFKRMVYNGRQLALKISANSVYGFTGATV-GKLPCLEISQSVTAFGRKMIDMTKL 701
Query: 1436 FVNENEK---------WKAKVIYGDTDRYTV 1457
V K AKVIYGDTD V
Sbjct: 702 EVERIYKKGALDGKCPADAKVIYGDTDSVMV 732
>sp|Q1HVC1|DPOL_EBVA8 DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain AG876)
GN=BALF5 PE=3 SV=1
Length = 1015
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 139/532 (26%), Positives = 242/532 (45%), Gaps = 98/532 (18%)
Query: 970 GDL---RPDPRYDSINVVALAFE-----------NDSDHAVEIYVLLYCKSES---HQRS 1012
GDL R D + S +A E N++D ++I +L+ E ++R
Sbjct: 276 GDLSVRREDSSWPSYQALAFDIECLGEEGFPTATNEADLILQISCVLWSTGEEAGRYRRI 335
Query: 1013 LVGIPDCK------VFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHL 1066
L+ + C+ V+ E+ + F +++ +I+ G+++ ++ +RA H+
Sbjct: 336 LLTLGTCEDIEGVEVYEFPSELDMLYAFFQLIRDLSVEIVTGYNVANFDWPYILDRARHI 395
Query: 1067 GIGLLNDISRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHAS 1126
I+ L A G E+ R D + L + +
Sbjct: 396 -----YSINPASLGKIRAGGVCEV--RRPHD-------AGKGFLRAN------------T 429
Query: 1127 GLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARY 1186
+ + G I ++++ + R ++ L+ Y ++ VA +L K + ++ + + FA+GP R
Sbjct: 430 KVRITGLIPIDMYAVCRDKLSLSDYKLDTVARHLLGAKKEDVHYKEIPRLFAAGP-EGRR 488
Query: 1187 RCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQ 1246
R Y V + L ++++N + +E+A++ I VL G Q RV S LL A +
Sbjct: 489 RLGMYCVQDSALVMDLLNHFVIHVEVAEIAKIAHIPCRRVLDDGQQIRVFSCLLAAAQKE 548
Query: 1247 NYLAISP-GNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTC 1305
N++ P + + Q A V++P SGFY PV+V+DF SLYPS++ A+NLC+ T
Sbjct: 549 NFILPMPSASDRDGYQGAT-----VIQPLSGFYNSPVLVVDFASLYPSIIQAHNLCYST- 602
Query: 1306 LGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILST 1365
I P +E+ L + RP D + L GV + V+K V L +L++
Sbjct: 603 --MITPGEEHRL--AGLRPG----EDYESFRLT--GGVYHF---VKKHVHESFLASLLTS 649
Query: 1366 RIMVKQAIKKLA-----PSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELAD 1420
+ ++AIKKL P Q+ I + +QLA+K N YG+T +G PC +A+
Sbjct: 650 WLAKRKAIKKLLAACEDPRQRT---ILDKQQLAIKCTCNAVYGFTGVA-NGLFPCLSIAE 705
Query: 1421 SIVQCGRSTLEKAISFVNE-------------------NEKWKAKVIYGDTD 1453
++ GR+ LE+A +FV N + + +VIYGDTD
Sbjct: 706 TVTLQGRTMLERAKAFVEALSPANLQALAPSPDAWAPLNPEGQLRVIYGDTD 757
>sp|P03198|DPOL_EBVB9 DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain B95-8)
GN=BALF5 PE=1 SV=1
Length = 1015
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 139/532 (26%), Positives = 242/532 (45%), Gaps = 98/532 (18%)
Query: 970 GDL---RPDPRYDSINVVALAFE-----------NDSDHAVEIYVLLYCKSES---HQRS 1012
GDL R D + S +A E N++D ++I +L+ E ++R
Sbjct: 276 GDLSVRREDSSWPSYQALAFDIECLGEEGFPTATNEADLILQISCVLWSTGEEAGRYRRI 335
Query: 1013 LVGIPDCK------VFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHL 1066
L+ + C+ V+ E+ + F +++ +I+ G+++ ++ +RA H+
Sbjct: 336 LLTLGTCEDIEGVEVYEFPSELDMLYAFFQLIRDLSVEIVTGYNVANFDWPYILDRARHI 395
Query: 1067 GIGLLNDISRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHAS 1126
I+ L A G E+ R D + L + +
Sbjct: 396 -----YSINPASLGKIRAGGVCEV--RRPHD-------AGKGFLRAN------------T 429
Query: 1127 GLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARY 1186
+ + G I ++++ + R ++ L+ Y ++ VA +L K + ++ + + FA+GP R
Sbjct: 430 KVRITGLIPIDMYAVCRDKLSLSDYKLDTVARHLLGAKKEDVHYKEIPRLFAAGP-EGRR 488
Query: 1187 RCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQ 1246
R Y V + L ++++N + +E+A++ I VL G Q RV S LL A +
Sbjct: 489 RLGMYCVQDSALVMDLLNHFVIHVEVAEIAKIAHIPCRRVLDDGQQIRVFSCLLAAAQKE 548
Query: 1247 NYLAISP-GNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTC 1305
N++ P + + Q A V++P SGFY PV+V+DF SLYPS++ A+NLC+ T
Sbjct: 549 NFILPMPSASDRDGYQGAT-----VIQPLSGFYNSPVLVVDFASLYPSIIQAHNLCYST- 602
Query: 1306 LGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILST 1365
I P +E+ L + RP D + L GV + V+K V L +L++
Sbjct: 603 --MITPGEEHRL--AGLRPG----EDYESFRLT--GGVYHF---VKKHVHESFLASLLTS 649
Query: 1366 RIMVKQAIKKLA-----PSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELAD 1420
+ ++AIKKL P Q+ I + +QLA+K N YG+T +G PC +A+
Sbjct: 650 WLAKRKAIKKLLAACEDPRQRT---ILDKQQLAIKCTCNAVYGFTGVA-NGLFPCLSIAE 705
Query: 1421 SIVQCGRSTLEKAISFVNE-------------------NEKWKAKVIYGDTD 1453
++ GR+ LE+A +FV N + + +VIYGDTD
Sbjct: 706 TVTLQGRTMLERAKAFVEALSPANLQALAPSPDAWAPLNPEGQLRVIYGDTD 757
>sp|Q3KSP1|DPOL_EBVG DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain GD1)
GN=BALF5 PE=3 SV=1
Length = 1015
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 141/532 (26%), Positives = 241/532 (45%), Gaps = 98/532 (18%)
Query: 970 GDL---RPDPRYDSINVVALAFE-----------NDSDHAVEIYVLLYCKSES---HQRS 1012
GDL R D + S +A E N++D ++I +L+ E ++R
Sbjct: 276 GDLSVRREDSSWPSYQALAFDIECLGEEGFPTATNEADLILQISCVLWSTGEEAGRYRRI 335
Query: 1013 LVGIPDCK------VFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHL 1066
L+ + C+ V+ E+ + F +++ +I+ G+++ ++ +RA H
Sbjct: 336 LLTLGTCEDIEGVEVYEFPSELDMLYAFFQLIRDLSVEIVTGYNVANFDWPYILDRARH- 394
Query: 1067 GIGLLNDISRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHAS 1126
I +N S KI AG G+ + L A +
Sbjct: 395 -IYSINPASL----GKIRAG-------GVCEVRRPHDAGKGFLRANTKV----------- 431
Query: 1127 GLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARY 1186
+ G I ++++ + R ++ L+ Y ++ VA +L K + ++ + + FA+GP R
Sbjct: 432 --RITGLIPIDMYAVCRDKLSLSDYKLDTVARHLLGAKKEDVHYKEIPRLFAAGP-EGRR 488
Query: 1187 RCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQ 1246
R Y V + L ++++N + +E+A++ I VL G Q RV S LL A +
Sbjct: 489 RLGMYCVQDSALVMDLLNHFVIHVEVAEIAKIAHIPCRRVLDDGQQIRVFSCLLAAAQKE 548
Query: 1247 NYLAISP-GNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTC 1305
N++ P + + Q A V++P SGFY PV+V+DF SLYPS++ A+NLC+ T
Sbjct: 549 NFILPMPSASDRDGYQGAT-----VIQPLSGFYNSPVLVVDFASLYPSIIQAHNLCYST- 602
Query: 1306 LGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILST 1365
I P +E+ L + RP D + L GV + V+K V L +L++
Sbjct: 603 --MITPGEEHRL--AGLRPG----EDYESFRLT--GGVYHF---VKKHVHESFLASLLTS 649
Query: 1366 RIMVKQAIKKLA-----PSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELAD 1420
+ ++AIKKL P Q+ I + +QLA+K N YG+T +G PC +A+
Sbjct: 650 WLAKRKAIKKLLAACEDPRQRT---ILDKQQLAIKCTCNAVYGFTGVA-NGLFPCLSIAE 705
Query: 1421 SIVQCGRSTLEKAISFVNE-------------------NEKWKAKVIYGDTD 1453
++ GR+ LE+A +FV N + + +VIYGDTD
Sbjct: 706 TVTLQGRTMLERAKAFVEALSPANLQALAPSPDAWAPLNPEGQLRVIYGDTD 757
>sp|P24907|DPOL_SHV21 DNA polymerase OS=Saimiriine herpesvirus 2 (strain 11) GN=9 PE=3 SV=1
Length = 1009
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 121/462 (26%), Positives = 208/462 (45%), Gaps = 75/462 (16%)
Query: 1015 GIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDI 1074
+ + +V+ EI + F ++ F+ +I+ G++I L +L +RA + L+D
Sbjct: 334 AVENTEVYEFPSEIDMLHGFFSLIRDFNVEIITGYNISNFDLPYLIDRATQIYNIKLSDY 393
Query: 1075 SRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRI 1134
SR S + + G ++ S + + G I
Sbjct: 394 SRVKTGSIFQVHTPKDTGNGFMRSV--------------------------SKIKISGII 427
Query: 1135 VLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGP-GRARYRCVEYVV 1193
++++ + + ++ L+ Y ++ VA + K + ++ + F SGP GRA+ Y V
Sbjct: 428 AIDMYIVCKDKLSLSNYKLDTVANHCIGAKKEDVSYKDIMPLFMSGPEGRAKIGL--YCV 485
Query: 1194 GRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNY-LAIS 1252
+ L ++++ + SE+A++ I VL+ G Q RV S LL A +NY L +S
Sbjct: 486 IDSVLVMKLLKFFMIHVEISEIAKLAKIPTRRVLTDGQQIRVFSCLLAAARAENYILPVS 545
Query: 1253 PGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPS 1312
+ Q A V+ P GFY + V+V+DF SLYPS++ A+NLC+ T ++P
Sbjct: 546 NDVNADGFQGAT-----VINPIPGFYNNAVLVVDFASLYPSIIQAHNLCYST----LIPH 596
Query: 1313 KENTLGVSSFRPDLHVLRDLK----DELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIM 1368
LH LK + ++ + +V ++ +L RLL LS R
Sbjct: 597 HA-----------LHNYPHLKSSDYETFMLSSGPIHFVKKHIQASLLSRLLTVWLSKRKA 645
Query: 1369 VKQAIKKLAPSQQI-LHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGR 1427
++Q KLA + + I + +QLA+K+ N YG+T SG +PC +A+++ GR
Sbjct: 646 IRQ---KLAECEDLDTKTILDKQQLAIKVTCNAVYGFTGVA-SGLLPCISIAETVTLQGR 701
Query: 1428 STLEKAISF----------------VNENEKWKAKVIYGDTD 1453
+ LEK+ F V K +VIYGDTD
Sbjct: 702 TMLEKSKIFIEAMTPDTLQEIVPHIVKHEPDAKFRVIYGDTD 743
>sp|O36363|DPOL_ALHV1 DNA polymerase catalytic subunit OS=Alcelaphine herpesvirus 1 (strain
C500) GN=9 PE=3 SV=1
Length = 1026
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 113/458 (24%), Positives = 204/458 (44%), Gaps = 68/458 (14%)
Query: 1016 IPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDIS 1075
I + KV+ E+ L F +L + +++ G++I ++ RA ++ D S
Sbjct: 365 IENVKVYEFPSEMDLLYGFFTLLRDYGIEMITGYNICNFDFPYILNRAQNVYNIKPEDFS 424
Query: 1076 RTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIV 1135
+T S + E + R+H S + + G +V
Sbjct: 425 KTKTNSLFYVYTPQ---------------------------EGNFMRSH-SKVKMSGVVV 456
Query: 1136 LNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGR 1195
++++++ R ++ L+ Y + VA+ L K + ++ + F G + R + Y V
Sbjct: 457 IDMYQVCRDKLNLSNYKLNTVAKECLGEKKNDVSYKDIPILF-KGSSKDRAKLGMYCVQD 515
Query: 1196 AKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISP-G 1254
A L ++++ +E+A++ I VLS G Q RV + LL A ++Y+ P
Sbjct: 516 AVLVIDLLKHFMTHIEITEIAKIANIPTRRVLSDGQQIRVFTCLLAAAQERDYILPMPVT 575
Query: 1255 NHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKE 1314
Q Q A V+ P SGFY PV+V+DF SLYPS++ A+NLC+ T + + K
Sbjct: 576 GSQEGYQGAT-----VINPISGFYNTPVLVVDFASLYPSIIQAHNLCYSTLIKQQDLPKF 630
Query: 1315 NTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIK 1374
L + + + +I V +V + +L LL+ L+ R +K+ ++
Sbjct: 631 TNLTANDY-----------ETFMISGGPVHFVKKHKTESLLASLLKTWLAKRKSIKKELE 679
Query: 1375 KLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAI 1434
+ ++ + I + +QLA+K+ N YG+T SG +PC +A+++ GR+ LEK
Sbjct: 680 QCQDAK--MKTILDKQQLAIKVTCNSVYGFTGVA-SGMLPCLMIAETVTLQGRTMLEKTK 736
Query: 1435 SFVN-------------------ENEKWKAKVIYGDTD 1453
FV ++ K +V+YGDTD
Sbjct: 737 QFVENVTVEYLQKICNFEVQCLPQHPNPKFRVVYGDTD 774
>sp|O71121|DPOL_RHCM6 DNA polymerase OS=Rhesus cytomegalovirus (strain 68-1) GN=UL54 PE=3
SV=1
Length = 1035
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 167/353 (47%), Gaps = 46/353 (13%)
Query: 1130 VGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASG-PGRARYRC 1188
+ G +V++++ + + Y + +AE L+++ + ++ + F SG GRA+
Sbjct: 434 ISGTVVIDMYPVCMAKTSSPNYKLNTMAELYLKQQKEDMSYKDIPVKFISGCEGRAQVG- 492
Query: 1189 VEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNY 1248
+Y V A L ++ N ++ +AR+ I V+ G Q R+ + LL +++
Sbjct: 493 -KYCVQDAVLVKDLFNTINFHYEAGAIARLARIPMRRVIFDGQQIRIYTSLLDECACRDF 551
Query: 1249 LAISPGNHQVASQPAMECL--PLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCL 1306
+ + +S+P V EPE G+Y+DPVVV DF SLYPS+++A+NLC+ T +
Sbjct: 552 IMPNHKGADNSSEPTDVSYQGATVFEPEVGYYSDPVVVFDFASLYPSIIMAHNLCYSTFV 611
Query: 1307 --GKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILS 1364
G P + + L V +L+ L +V VR VL LL + +S
Sbjct: 612 APGGESPPESDVLTV-----------ELESGL-----SYRFVKNTVRNSVLSELLTKWVS 655
Query: 1365 TRIMVKQAIKKLA-PSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIV 1423
R V++ ++ P +++L + QLALK+ N YG+T +G MPC +A SI
Sbjct: 656 QRRAVRETMRSCHDPVKRML---LDKEQLALKVTCNAFYGFTGV-VNGMMPCLPIAASIT 711
Query: 1424 QCGRSTLEKAISFVNEN------------------EKWKAKVIYGDTDRYTVC 1458
+ GR L + FV EN + KVIYGDTD VC
Sbjct: 712 RIGRDMLMRTSQFVEENFAEPCFLHNFFNREDYSGDPVAVKVIYGDTDSVFVC 764
>sp|Q9QJ32|DPOL_HHV6Z DNA polymerase catalytic subunit OS=Human herpesvirus 6B (strain Z29)
GN=U38 PE=3 SV=1
Length = 1012
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 127/498 (25%), Positives = 225/498 (45%), Gaps = 84/498 (16%)
Query: 989 ENDSDHAVEIYVLLY-CKSESHQRSLVGIPDCK------VFVCSKEIHLFSHFIKILCSF 1041
EN D ++I V+ + + + +R L + C+ ++ + E L F L
Sbjct: 296 ENLGDIVIQISVVSFDTEGDRDERHLFTLGTCEQIDGVHIYEFASEFELLLGFFIFLRIE 355
Query: 1042 DPDILMGWDIQGGSLGFLA---ERAAHLGIGLLNDISRTPLESKIAAGDSEISERGITDN 1098
P+ + G++I L +L ++ H IG SK+ G IS
Sbjct: 356 SPEFITGYNINNFDLKYLCIRMDKIYHYEIGCF---------SKLKNGKIGIS------- 399
Query: 1099 MLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAE 1158
V E K ++ + + + G + L+++ + ++ Y ++ +A+
Sbjct: 400 -----VPHEQY--KKGFLQAQ------TKVFTSGVLYLDMYPVYSSKITAQNYKLDTIAK 446
Query: 1159 TVLRRKIPSIPFRVLTKWFASGP-GRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELAR 1217
L+++ + ++ + K F SGP GRA +Y + + L + + Q++ +E+AR
Sbjct: 447 ICLQQEKEQLSYKEIPKKFISGPSGRAVVG--KYCLQDSVLVVRLFKQINYHYEVAEVAR 504
Query: 1218 VFGIDFFSVLSRGSQYRVESMLLRLAHTQNYL---AISPGNHQVASQPAMECLPLVMEPE 1274
+ + V+ G Q ++ +L A +N + +S N Q V+EP+
Sbjct: 505 LAHVTARCVVFEGQQKKIFPCILTEAKRRNMILPSMVSSHNRQGIGYKG----ATVLEPK 560
Query: 1275 SGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKD 1334
+G+YA P VV DFQSLYPS+M+A+NLC+ T ++ + G+S D+ ++ L D
Sbjct: 561 TGYYAVPTVVFDFQSLYPSIMMAHNLCYST----LVLDERQIAGLSE--SDILTVK-LGD 613
Query: 1335 ELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLAL 1394
E +V P VR+ VL LL++ L+ R VK ++ S ++ + + +QLAL
Sbjct: 614 ETH------RFVKPCVRESVLGSLLKDWLAKRREVKAEMQNC--SDPMMKLLLDKKQLAL 665
Query: 1395 KLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVN---ENEKW-------- 1443
K N YG T A G +PC +A S+ GR L + +VN ++E++
Sbjct: 666 KTTCNSVYGVTGAA-HGLLPCVAIAASVTCLGREMLCSTVDYVNSKMQSEQFFCEELGLT 724
Query: 1444 --------KAKVIYGDTD 1453
K +VIYGDTD
Sbjct: 725 ASDFTGDLKVEVIYGDTD 742
>sp|P28857|DPOL_HHV6U DNA polymerase OS=Human herpesvirus 6A (strain Uganda-1102) GN=U38
PE=3 SV=1
Length = 1012
Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 125/498 (25%), Positives = 223/498 (44%), Gaps = 84/498 (16%)
Query: 989 ENDSDHAVEIYVLLY-CKSESHQRSLVGIPDCK------VFVCSKEIHLFSHFIKILCSF 1041
EN D ++I V+ + + + +R L + C+ ++ + E L F L
Sbjct: 296 ENLGDIVIQISVISFDTEGDRDERHLFTLGTCEKIDGVHIYEFASEFELLLGFFIFLRIE 355
Query: 1042 DPDILMGWDIQGGSLGFLA---ERAAHLGIGLLNDISRTPLESKIAAGDSEISERGITDN 1098
P+ + G++I L +L ++ H IG SK+ G IS
Sbjct: 356 SPEFITGYNINNFDLKYLCIRMDKIYHYDIGCF---------SKLKNGKIGIS------- 399
Query: 1099 MLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAE 1158
+ E L A+ + G + L+++ + ++ Y ++ +A+
Sbjct: 400 VPHEQYRKGFLQAQTKVF-------------TSGVLYLDMYPVYSSKITAQNYKLDTIAK 446
Query: 1159 TVLRRKIPSIPFRVLTKWFASGP-GRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELAR 1217
L+++ + ++ + K F SGP GRA +Y + + L + + Q++ +E+AR
Sbjct: 447 ICLQQEKEQLSYKEIPKKFISGPSGRAVVG--KYCLQDSVLVVRLFKQINYHFEVAEVAR 504
Query: 1218 VFGIDFFSVLSRGSQYRVESMLLRLAHTQNYL---AISPGNHQVASQPAMECLPLVMEPE 1274
+ + V+ G Q ++ +L A +N + +S N Q V+EP+
Sbjct: 505 LAHVTARCVVFEGQQKKIFPCILTEAKRRNMILPSMVSSHNRQGIGYKG----ATVLEPK 560
Query: 1275 SGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKD 1334
+G+YA P VV DFQSLYPS+M+A+NLC+ T ++ + G+S D+ ++ L D
Sbjct: 561 TGYYAVPTVVFDFQSLYPSIMMAHNLCYST----LVLDERQIAGLSE--SDILTVK-LGD 613
Query: 1335 ELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLAL 1394
E +V P +R+ VL LL++ L+ R VK ++ S ++ + + +QLAL
Sbjct: 614 ETH------RFVKPCIRESVLGSLLKDWLAKRREVKAEMQNC--SDPMMKLLLDKKQLAL 665
Query: 1395 KLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVN---ENEKW-------- 1443
K N YG T A G +PC +A S+ GR L + +VN ++E++
Sbjct: 666 KTTCNSVYGVTGAA-HGLLPCVAIAASVTCLGREMLCSTVDYVNSKMQSEQFFCEEFGLT 724
Query: 1444 --------KAKVIYGDTD 1453
+ +VIYGDTD
Sbjct: 725 SSDFTGDLEVEVIYGDTD 742
>sp|P09252|DPOL_VZVD DNA polymerase catalytic subunit OS=Varicella-zoster virus (strain
Dumas) GN=ORF28 PE=3 SV=1
Length = 1194
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 118/500 (23%), Positives = 205/500 (41%), Gaps = 119/500 (23%)
Query: 1015 GIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDI 1074
G+P+ V E L F+ ++ + P+ G++I F+ E+ LN I
Sbjct: 412 GLPEPTVLEFDSEFELLIAFMTLVKQYAPEFATGYNIVNFDWAFIMEK--------LNSI 463
Query: 1075 SRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRI 1134
L+ G I+ G + V +S G S + + G I
Sbjct: 464 YSLKLD-----GYGSINRGG----LFKIWDVGKS------------GFQRRSKVKINGLI 502
Query: 1135 VLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGP---GRARYRCVEY 1191
L+++ + ++KL+ Y +++VA L +P++ + ++ASGP G C++
Sbjct: 503 SLDMYAIATEKLKLSSYKLDSVAREALNESKRDLPYKDIPGYYASGPNTRGIIGEYCIQD 562
Query: 1192 VVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAI 1251
KL + + L++ S +AR+ I + G Q R+ + LL LA ++ + I
Sbjct: 563 SALVGKLFFKYLPHLEL----SAVARLARITLTKAIYDGQQVRIYTCLLGLASSRGF--I 616
Query: 1252 SPGNHQVASQPAMECLP-------------------------------LVMEPESGFYAD 1280
P A+ + +P V +P++GFY D
Sbjct: 617 LPDGGYPATFEYKDVIPDVGDVEEEMDEDESVSPTGTSSGRNVGYKGARVFDPDTGFYID 676
Query: 1281 PVVVLDFQSLYPSMMIAYNLCFCT------CLGKILPSKENTLGVSSFRPDLHVLRDLKD 1334
PVVVLDF SLYPS++ A+NLCF T + ++ PS T V R
Sbjct: 677 PVVVLDFASLYPSIIQAHNLCFTTLTLNFETVKRLNPSDYATFTVGGKR----------- 725
Query: 1335 ELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLAL 1394
+ +V VR+ +L LL++ L+ R ++ I + + +L + +Q A+
Sbjct: 726 --------LFFVRSNVRESLLGVLLKDWLAMRKAIRARIPGSSSDEAVL---LDKQQAAI 774
Query: 1395 KLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNEN-------------- 1440
K++ N YG+T G +PC +A ++ GR L +++ N
Sbjct: 775 KVVCNSVYGFTGVA-QGFLPCLYVAATVTTIGRQMLLSTRDYIHNNWAAFERFITAFPDI 833
Query: 1441 -------EKWKAKVIYGDTD 1453
+ ++ KVIYGDTD
Sbjct: 834 ESSVLSQKAYEVKVIYGDTD 853
>sp|Q4JQU7|DPOL_VZVO DNA polymerase catalytic subunit OS=Varicella-zoster virus (strain
Oka vaccine) GN=ORF28 PE=3 SV=1
Length = 1194
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 118/500 (23%), Positives = 205/500 (41%), Gaps = 119/500 (23%)
Query: 1015 GIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDI 1074
G+P+ V E L F+ ++ + P+ G++I F+ E+ LN I
Sbjct: 412 GLPEPTVLEFDSEFELLIAFMTLVKQYAPEFATGYNIVNFDWAFIMEK--------LNSI 463
Query: 1075 SRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRI 1134
L+ G I+ G + V +S G S + + G I
Sbjct: 464 YSLKLD-----GYGSINRGG----LFKIWDVGKS------------GFQRRSKVKINGLI 502
Query: 1135 VLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGP---GRARYRCVEY 1191
L+++ + ++KL+ Y +++VA L +P++ + ++ASGP G C++
Sbjct: 503 SLDMYAIATEKLKLSSYKLDSVAREALNESKRDLPYKDIPGYYASGPNTRGIIGEYCIQD 562
Query: 1192 VVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAI 1251
KL + + L++ S +AR+ I + G Q R+ + LL LA ++ + I
Sbjct: 563 SALVGKLFFKYLPHLEL----SAVARLARITLTKAIYDGQQVRIYTCLLGLASSRGF--I 616
Query: 1252 SPGNHQVASQPAMECLP-------------------------------LVMEPESGFYAD 1280
P A+ + +P V +P++GFY D
Sbjct: 617 LPDGGYPATFEYKDVIPDVGDVEEEMDEDESVSPTGTSSGRNVGYKGARVFDPDTGFYID 676
Query: 1281 PVVVLDFQSLYPSMMIAYNLCFCT------CLGKILPSKENTLGVSSFRPDLHVLRDLKD 1334
PVVVLDF SLYPS++ A+NLCF T + ++ PS T V R
Sbjct: 677 PVVVLDFASLYPSIIQAHNLCFTTLTLNFETVKRLNPSDYATFTVGGKR----------- 725
Query: 1335 ELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLAL 1394
+ +V VR+ +L LL++ L+ R ++ I + + +L + +Q A+
Sbjct: 726 --------LFFVRSNVRESLLGVLLKDWLAMRKAIRARIPGSSSDEAVL---LDKQQAAI 774
Query: 1395 KLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNEN-------------- 1440
K++ N YG+T G +PC +A ++ GR L +++ N
Sbjct: 775 KVVCNSVYGFTGVA-QGFLPCLYVAATVTTIGRQMLLSTRDYIHNNWAAFERFITAFPDI 833
Query: 1441 -------EKWKAKVIYGDTD 1453
+ ++ KVIYGDTD
Sbjct: 834 ESSVLSQKAYEVKVIYGDTD 853
>sp|Q6UDK1|DPOL_PSHV1 DNA polymerase catalytic subunit OS=Psittacid herpesvirus 1 (isolate
Amazon parrot/-/97-0001/1997) GN=UL30 PE=3 SV=1
Length = 1081
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 111/467 (23%), Positives = 194/467 (41%), Gaps = 80/467 (17%)
Query: 1020 KVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPL 1079
KV C E L F+ L F P+ + G++I G GF+ + ++ L+ +
Sbjct: 383 KVCECGSEFELLLCFMTFLKQFSPEFVTGYNILGFDWGFMYNKMVNIYGMRLDGYGKANA 442
Query: 1080 ESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVW 1139
D S RG N + + G + +++
Sbjct: 443 WGTFKVQDMPHSGRGKFRN-----------------------------VKINGIVNFDMF 473
Query: 1140 RLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLN 1199
++ ++KL Y + +VAETVL K + ++ L + FA GP R + Y + ++L
Sbjct: 474 SIIYQKIKLCSYKLNSVAETVLGEKKHDLSYKDLPRLFALGP-EERGKIGAYCLQDSRLA 532
Query: 1200 LEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQ-----------NY 1248
++ +L S +A++ I + G Q RV + LL+ A +
Sbjct: 533 TKLFFKLVPHMELSAVAQLACITLTRAVFDGQQVRVFTCLLQRARKIGVVLPEKSDRFTF 592
Query: 1249 LAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGK 1308
A + G+ + V++P+ GF+ +PV+V DF SLYPS++ + NLC+ T
Sbjct: 593 SAHAAGDQDDGGRSVGYQGAKVLDPDVGFHVNPVMVFDFASLYPSIIQSNNLCYSTM--- 649
Query: 1309 ILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNG--VMYVPPKVRKGVLPRLLEEILSTR 1366
N ++ L + D L + G +V VR+ +L LL + L+ R
Sbjct: 650 ----THNPAAIAH-------LEEGTDYLRVEVQGRVFFFVREHVRRSLLAELLTDWLNMR 698
Query: 1367 IMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCG 1426
++ I A + + + + +Q+A+K+I N YG+T +G +PC E+A ++ G
Sbjct: 699 KALRAQIPLAATEDEKV--LLDMQQIAIKVICNSVYGFTGV-MNGMLPCLEVAATVTAIG 755
Query: 1427 RSTLEKAISFVNENEK--------------------WKAKVIYGDTD 1453
R L K ++ EN + + VIYGDTD
Sbjct: 756 RDMLLKTKQYIEENWREYSNIRERFFPAMAHEGVPQYSVAVIYGDTD 802
>sp|P56689|DPOL_THEGO DNA polymerase OS=Thermococcus gorgonarius GN=pol PE=1 SV=1
Length = 773
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 113/438 (25%), Positives = 188/438 (42%), Gaps = 73/438 (16%)
Query: 1023 VCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESK 1082
V S E + F+K++ DPD+L+ ++ +L +R+ LG+ + + R E K
Sbjct: 183 VVSTEKEMIKRFLKVVKEKDPDVLITYNGDNFDFAYLKKRSEKLGVKFI--LGREGSEPK 240
Query: 1083 IAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWRLM 1142
I + + D E V GRI +++ ++
Sbjct: 241 I---------QRMGDRFAVE---------------------------VKGRIHFDLYPVI 264
Query: 1143 RGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEI 1202
R + L YT+EAV E + + + + + + +G G R Y + AK+ E+
Sbjct: 265 RRTINLPTYTLEAVYEAIFGQPKEKVYAEEIAQAWETGEGLER--VARYSMEDAKVTYEL 322
Query: 1203 MNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAIS-PGNHQVASQ 1261
+ ++L+R+ G + V + VE LLR A+ +N LA + P ++A +
Sbjct: 323 GKEF--FPMEAQLSRLVGQSLWDVSRSSTGNLVEWFLLRKAYERNELAPNKPDERELARR 380
Query: 1262 PAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSS 1321
V EPE G + + +V LDF+SLYPS++I +N+ P N G
Sbjct: 381 RESYAGGYVKEPERGLWEN-IVYLDFRSLYPSIIITHNVS---------PDTLNREGCEE 430
Query: 1322 FRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQ 1381
+ + P G + K G +P LL ++L R VK+ +K A
Sbjct: 431 YD-------------VAPQVGHKFC--KDFPGFIPSLLGDLLEERQKVKKKMK--ATIDP 473
Query: 1382 ILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENE 1441
I ++ + RQ A+K++AN YGY R C E A+S+ GR +E I + E
Sbjct: 474 IEKKLLDYRQRAIKILANSFYGYYGYA-KARWYCKECAESVTAWGRQYIETTIREI--EE 530
Query: 1442 KWKAKVIYGDTDRYTVCI 1459
K+ KV+Y DTD + I
Sbjct: 531 KFGFKVLYADTDGFFATI 548
>sp|Q9DKT8|DPOL_ELHVK DNA polymerase catalytic subunit OS=Elephantid herpesvirus 1 (isolate
Asian elephant/Berlin/Kiba/1998) PE=3 SV=1
Length = 1041
Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 113/469 (24%), Positives = 196/469 (41%), Gaps = 84/469 (17%)
Query: 1012 SLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGI--G 1069
S IP ++ C+ E L F+ + + P+ + G++I + ++ R + I G
Sbjct: 366 SCAEIPGVYIYECASEYELIESFLTFVRVYGPNFITGYNINAFDIPYVIGRCRYYNIQCG 425
Query: 1070 LLNDISRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLH 1129
+ R + +G+ ES L + +
Sbjct: 426 AFTKMKRGRMTCF----------KGM-----------ESFLNR-----------CQCKVT 453
Query: 1130 VGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFA-SGPGRARYRC 1188
+ G ++++++R+ +V + ++ V + +L K S+ ++ + F GRA
Sbjct: 454 ISGIVIIDMYRVCMDKVSAPNHKLDTVVDMLLGEKKHSVSYKQIPVLFRRDDDGRAVVG- 512
Query: 1189 VEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNY 1248
Y V + L ++ +L S +AR+ I V+ G Q R+ + +L A +
Sbjct: 513 -AYCVHDSVLVHKLFCKLLFHYEASAIARLSNISINKVVFDGQQSRIFTCMLAAARREG- 570
Query: 1249 LAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGK 1308
I P + V+EP++GFY PV V DF SLYPS++ AYNLC+CT +
Sbjct: 571 -LIIPSIDEAGEDTYQG--ATVLEPKTGFYNTPVAVFDFASLYPSIIQAYNLCYCTLI-- 625
Query: 1309 ILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVM--YVPPKVRKGVLPRLLEEILSTR 1366
+N + LR+ ++ G + +V P VRK +L +LL L+ R
Sbjct: 626 ----TDNYVA---------SLREEDITMVTTNTGRVHRFVKPHVRKSILSQLLTSWLAER 672
Query: 1367 IMVKQAIKKLA-PSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQC 1425
V++ +K P QIL + +QLALKL N YG+T G PC +A+S+
Sbjct: 673 KAVREKLKHCKDPLMQIL---LDKQQLALKLTCNAVYGFTGVS-KGMFPCLAIAESVTAQ 728
Query: 1426 GRSTLEKAISFVN---------------------ENEKWKAKVIYGDTD 1453
GR L ++ ++ ++K V+YGDTD
Sbjct: 729 GRQLLAVTKQYICDRFNDWTFLTQIAPELVDCPVDSNRFKIDVVYGDTD 777
>sp|P52367|DPOL_EHV2 DNA polymerase OS=Equine herpesvirus 2 (strain 86/87) GN=9 PE=3 SV=1
Length = 1008
Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 112/454 (24%), Positives = 195/454 (42%), Gaps = 61/454 (13%)
Query: 1016 IPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDIS 1075
I +V+ C E+ L F ++ D + + G++I ++ +RA + L + +
Sbjct: 343 IEGVEVYQCPSELDLLYLFFTMIRDADVEFVTGYNISNFDFPYVIDRATQVYNLNLKEFT 402
Query: 1076 RTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIV 1135
R S + S G + S + V G +
Sbjct: 403 RVRSSSIFEVHKPKNSSAGFMRAV--------------------------SKVKVAGVVP 436
Query: 1136 LNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGR 1195
++++++ R ++ L+ Y ++ VA + K + ++ + F GPG R R Y V
Sbjct: 437 IDMYQVCRDKLSLSNYKLDTVAGECVGAKKEDVSYKEIPHLFRQGPG-GRARLGLYCVKD 495
Query: 1196 AKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGN 1255
+ L L+++ SE+A++ I VL+ G Q RV S LL +A + Y I P +
Sbjct: 496 SALVLDLLRYFMTHVEISEIAKIAKIPTRRVLTDGQQIRVFSCLLDVAGREGY--ILPVD 553
Query: 1256 HQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKEN 1315
++ V++P GFY PV+V+DF SLYP+++ A+NLC+ T ++P
Sbjct: 554 RHADAEGYQGAT--VIDPSPGFYNTPVLVVDFASLYPTIIQAHNLCYST----MIPGDRL 607
Query: 1316 TLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKK 1375
L P L EL P V +V +L LL L+ R +++ +
Sbjct: 608 CL-----HPHLGPGDYETFELASGP--VHFVKKHKAVSLLATLLNVWLAKRKAIRRELAT 660
Query: 1376 LAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAIS 1435
+ S + + I + +QLA+K+ N YG+T SG +PC ++A+++ GR LE +
Sbjct: 661 V--SDEAVRTILDKQQLAIKVTCNAVYGFTGVA-SGILPCLKIAETVTFQGRRMLENSKR 717
Query: 1436 FVNE----------------NEKWKAKVIYGDTD 1453
++ KVIYGDTD
Sbjct: 718 YIEGVTPEGLADILGRRVECAPDASFKVIYGDTD 751
>sp|Q69025|DPOL_GPCMV DNA polymerase OS=Guinea pig cytomegalovirus (strain 22122) PE=3 SV=2
Length = 1117
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 133/505 (26%), Positives = 200/505 (39%), Gaps = 113/505 (22%)
Query: 1016 IPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDIS 1075
IP V+ E L F ++ PDIL G++I + +L +R + +++ +
Sbjct: 368 IPGTHVYEFPSEYELLLGFFIFFKAYPPDILTGYNINLFDIKYLLQRMEKIYHANVSEFT 427
Query: 1076 RTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIV 1135
+ + + + PV + A A I+ +H G +V
Sbjct: 428 KLRFGGRFS---------------IYVPVGTKPRNASSASIK----------VHCTGTVV 462
Query: 1136 LNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWF-ASGPGRARYRCVEYVVG 1194
L+++ + + Y +E +AE L + ++ + F A+ GRA VVG
Sbjct: 463 LDMYPVCVAKTSAPNYKLETMAEMYLNEHKDDLSYKEIPPTFLANDNGRA-------VVG 515
Query: 1195 R-----AKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYL 1249
R A L + +L+ + +AR+ I SV+ G Q R+ S +L A +N +
Sbjct: 516 RYCIKDALLVKRLFEKLNYHYEAASVARLARIPLRSVIFEGQQIRIYSCILEEAGERNMI 575
Query: 1250 ------AISPGNHQVASQPAMECL----------------------------PLVMEPES 1275
A PG S P V+EP+
Sbjct: 576 LPSFLTAKRPGELATESSPVASFEEDSEQTSDSSLGEVSSQGSSDGGVGYQGATVLEPDV 635
Query: 1276 GFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDE 1335
GFY PV V DF SLYPS+++ +NLC+ T L LG D V
Sbjct: 636 GFYDTPVAVFDFASLYPSIIMRHNLCYSTYL---------PLGRDDGLSDDDVF------ 680
Query: 1336 LLIPPNGVMY--VPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHR-IFNARQL 1392
LL +G Y V VRK +L LL L+ R V+ K LA Q + + I + QL
Sbjct: 681 LLEFDDGTRYGFVREHVRKSILGELLARWLAKRKSVR---KVLAECQDEVEKLILDKYQL 737
Query: 1393 ALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVN----ENEKW----- 1443
ALK+ N YG+T SG MPC +A +I + GR L + +VN E W
Sbjct: 738 ALKVTCNAFYGFTGVS-SGMMPCLPIAAAITRIGRDMLMSVVDYVNTYMGHAEFWLRYLG 796
Query: 1444 ---------KAKVIYGDTDR-YTVC 1458
KVIYGDTD + +C
Sbjct: 797 EEDLTGDALNVKVIYGDTDSVFVIC 821
>sp|Q56366|DPOL_THES9 DNA polymerase OS=Thermococcus sp. (strain 9oN-7) GN=pol PE=1 SV=1
Length = 775
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 113/432 (26%), Positives = 184/432 (42%), Gaps = 73/432 (16%)
Query: 1023 VCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESK 1082
V S E + F++++ DPD+L+ ++ +L +R LGI + R E K
Sbjct: 183 VVSTEKEMIKRFLRVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFT--LGRDGSEPK 240
Query: 1083 IAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWRLM 1142
I + + D E V GRI +++ ++
Sbjct: 241 I---------QRMGDRFAVE---------------------------VKGRIHFDLYPVI 264
Query: 1143 RGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEI 1202
R + L YT+EAV E V + + + + + SG G R Y + AK+ E+
Sbjct: 265 RRTINLPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLER--VARYSMEDAKVTYEL 322
Query: 1203 MNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAIS-PGNHQVASQ 1261
+ ++L+R+ G + V + VE LLR A+ +N LA + P ++A +
Sbjct: 323 GREF--FPMEAQLSRLIGQSLWDVSRSSTGNLVEWFLLRKAYKRNELAPNKPDERELARR 380
Query: 1262 PAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSS 1321
V EPE G + D +V LDF+SLYPS++I +N+ P N G
Sbjct: 381 RGGYAGGYVKEPERGLW-DNIVYLDFRSLYPSIIITHNVS---------PDTLNREGCKE 430
Query: 1322 FRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQ 1381
+ + P G + K G +P LL ++L R +K+ +K A
Sbjct: 431 YD-------------VAPEVGHKFC--KDFPGFIPSLLGDLLEERQKIKRKMK--ATVDP 473
Query: 1382 ILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENE 1441
+ ++ + RQ A+K++AN YGY R C E A+S+ GR +E I + E
Sbjct: 474 LEKKLLDYRQRAIKILANSFYGYYGYA-KARWYCKECAESVTAWGREYIEMVIREL--EE 530
Query: 1442 KWKAKVIYGDTD 1453
K+ KV+Y DTD
Sbjct: 531 KFGFKVLYADTD 542
>sp|Q9E6N9|DPOL_GAHVM DNA polymerase catalytic subunit OS=Gallid herpesvirus 2 (strain
Chicken/Md5/ATCC VR-987) GN=MDV043 PE=3 SV=1
Length = 1220
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/382 (24%), Positives = 171/382 (44%), Gaps = 81/382 (21%)
Query: 1132 GRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGP---GRARYRC 1188
G I L+++ + ++KL Y ++ VAE L + + ++ + FA+GP G C
Sbjct: 509 GMITLDMYSIATEKLKLQSYKLDVVAEAALGERKKELSYKEIPSHFAAGPEKRGIIGEYC 568
Query: 1189 VEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNY 1248
++ + KL + + L++ S +A++ GI + G Q RV + LLRLA + +
Sbjct: 569 LQDSLLVGKLFFKYIPHLEL----SAIAKLAGILLSKAIFDGQQIRVYTCLLRLARSHGF 624
Query: 1249 LAISPGNHQVASQPAMECL--------------PL-----------------------VM 1271
+ + N + A ++ C P+ V+
Sbjct: 625 I-LPEKNKKFAETVSLTCEEDQTEICEHDSPQEPIHNIKQSSLCHSNSGRTIGYQGAKVL 683
Query: 1272 EPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRD 1331
+P SGF+ DPV+V DF SLYPS++ A+NLCF T + + +S+ RP L
Sbjct: 684 DPISGFHVDPVMVFDFASLYPSIIQAHNLCFTTLV-------HDDTNLSNLRPQDDYL-- 734
Query: 1332 LKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQ 1391
E+ + + +V P +R+ +L LL++ L+ R ++ I + +L + +Q
Sbjct: 735 ---EINVQGKLLRFVKPHIRESLLAILLKDWLAMRKAIRAKIPESCDEIAVL---LDKQQ 788
Query: 1392 LALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNEN----------- 1440
A+K++ N YG+ +G +PC ++A ++ GR+ L ++++
Sbjct: 789 AAIKVVCNSVYGFCGVS-NGLLPCIDVAATVTTIGRNMLLTVRDYIHKQWGTRDALLREF 847
Query: 1441 ---------EKWKAKVIYGDTD 1453
E + VIYGDTD
Sbjct: 848 PNLSNFMRPEDYSVSVIYGDTD 869
>sp|P52342|DPOL_HHV7J DNA polymerase OS=Human herpesvirus 7 (strain JI) GN=U38 PE=3 SV=1
Length = 1012
Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 115/468 (24%), Positives = 198/468 (42%), Gaps = 105/468 (22%)
Query: 1030 LFSHFIKILCSFDPDILMGWDIQGGSLGFLA---ERAAHLGIGLLNDISRTPLESKIAAG 1086
L++ F+ + C P+IL G++I L +L E+ + IG + + R
Sbjct: 343 LYAFFLFLKCK-SPEILTGYNIINFDLKYLCTRMEKIYNFEIGGFSKLKRGKF------- 394
Query: 1087 DSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGL---HVGGRIVLNVWRLMR 1143
I+ E + + L ++ G + +++ +
Sbjct: 395 --------------------------SVIVPYEQHKKFLNSLTKVNMSGILCFDMYNVYS 428
Query: 1144 GEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASG-PGRARYRCVEYVVGRAKL--NL 1200
++ Y ++ +A+ L ++ ++ ++ + K F G GRA VVGR + +L
Sbjct: 429 SKISAQNYKLDTIAKLCLNQEKENLSYKEIPKKFIDGSKGRA-------VVGRYCIQDSL 481
Query: 1201 EIMNQLDMINRTSELARVFGIDFFSV---LSRGSQYRVESMLLRLAHTQNYLA------I 1251
++ IN E+A V + + ++ + G Q ++ +L A N +
Sbjct: 482 LVVQLFTKINYHYEMAEVASLAYITIRCAVFEGQQKKIFPCILHEAKNLNMILPSMNTNF 541
Query: 1252 SPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILP 1311
+ G V + A V+EP+ G+YA P VV DFQSLYPS+M+A+NLC+ T L
Sbjct: 542 NKGKENVGYKGAT-----VLEPKIGYYATPTVVFDFQSLYPSIMMAHNLCYST-----LV 591
Query: 1312 SKENTLGVSSFRPDLHVLRDLKDELL---IPPNGVMYVPPKVRKGVLPRLLEEILSTRIM 1368
EN + LH D++L + P +V VR+ +L LL++ L R
Sbjct: 592 VDENAV------IGLHA-----DDILTVHVGPVTHRFVKKTVRESILASLLKKWLDKRKE 640
Query: 1369 VKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRS 1428
VK +K + ++ + + +QLALK N YG T A S +PC +A S+ GR
Sbjct: 641 VKMQMK--MCNNPVMEMLLDKKQLALKTTCNSVYGVTGATHS-LLPCVAIAASVTCLGRE 697
Query: 1429 TLEKAISFVNE-------------------NEKWKAKVIYGDTDRYTV 1457
L K + +V+ + + +VIYGDTD V
Sbjct: 698 MLCKTVDYVDSAMYSDTFFIEKFGLTRGDFSGTFGIEVIYGDTDSLFV 745
>sp|Q6S6P1|DPOL_EHV1V DNA polymerase catalytic subunit OS=Equine herpesvirus 1 (strain
V592) GN=30 PE=3 SV=1
Length = 1220
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 106/404 (26%), Positives = 175/404 (43%), Gaps = 98/404 (24%)
Query: 1126 SGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRAR 1185
S + + G I L+++ + ++KL Y ++AV VL +P++ + ++A GP R R
Sbjct: 508 SKVKINGLISLDMYSVATEKLKLPSYKLDAVVGDVLGEHKIDLPYKEIPSYYAGGPDR-R 566
Query: 1186 YRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHT 1245
EY + ++L ++ + S +A++ I V+ G Q RV + LL+LA
Sbjct: 567 GVIGEYCIQDSRLVGKLFFKYLPHLELSAVAKLARITLTRVIFDGQQIRVYTCLLKLARE 626
Query: 1246 QNYLAISPGNHQ---VASQPAMECLPLVME------------------------------ 1272
+N+ I P N + + A E L M+
Sbjct: 627 RNF--ILPDNRRRFDSQADAASETSELAMDSQSHAFDSTDEPDGVDGTPDAAGSGATSEN 684
Query: 1273 --------------------PESGFYADPVVVLDFQSLYPSMMIAYNLCFCT-CLGKI-L 1310
P SGF+ DPVVV DF SLYPS++ A+NLCF T L ++ L
Sbjct: 685 GGGKPGVGRAVGYQGAKVLDPVSGFHVDPVVVFDFASLYPSIIQAHNLCFTTLALDEVDL 744
Query: 1311 PSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVK 1370
+ ++ S+F ++ D+ L +V +R+ +L LL + L+ R V+
Sbjct: 745 AGLQPSVNYSTF--------EVGDQKL------FFVHAHIRESLLGILLRDWLAMRKAVR 790
Query: 1371 QAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTL 1430
I P + +L + +Q A+K+I N YG+T +G +PC +A ++ GR L
Sbjct: 791 ARIPTSTPEEAVL---LDKQQSAIKVICNSVYGFTGVA-NGLLPCLRIAATVTTIGRDML 846
Query: 1431 EK---------------------AISFVNENEKWKAKVIYGDTD 1453
K AI F N ++ + +VIYGDTD
Sbjct: 847 LKTRDYVHSRWATRELLEDNFPGAIGFRN-HKPYSVRVIYGDTD 889
>sp|P28858|DPOL_EHV1B DNA polymerase catalytic subunit OS=Equine herpesvirus 1 (strain
Ab4p) GN=30 PE=3 SV=1
Length = 1220
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 106/404 (26%), Positives = 175/404 (43%), Gaps = 98/404 (24%)
Query: 1126 SGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRAR 1185
S + + G I L+++ + ++KL Y ++AV VL +P++ + ++A GP R R
Sbjct: 508 SKVKINGLISLDMYSVATEKLKLPSYKLDAVVGDVLGEHKIDLPYKEIPSYYAGGPDR-R 566
Query: 1186 YRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHT 1245
EY + ++L ++ + S +A++ I V+ G Q RV + LL+LA
Sbjct: 567 GVIGEYCIQDSRLVGKLFFKYLPHLELSAVAKLARITLTRVIFDGQQIRVYTCLLKLARE 626
Query: 1246 QNYLAISPGNHQ---VASQPAMECLPLVME------------------------------ 1272
+N+ I P N + + A E L M+
Sbjct: 627 RNF--ILPDNRRRFDSQADAASETSELAMDSQSHAFDSTDEPDGVDGTPDAAGSGATSEN 684
Query: 1273 --------------------PESGFYADPVVVLDFQSLYPSMMIAYNLCFCT-CLGKI-L 1310
P SGF+ DPVVV DF SLYPS++ A+NLCF T L ++ L
Sbjct: 685 GGGKPGVGRAVGYQGAKVLDPVSGFHVDPVVVFDFASLYPSIIQAHNLCFTTLALDEVDL 744
Query: 1311 PSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVK 1370
+ ++ S+F ++ D+ L +V +R+ +L LL + L+ R V+
Sbjct: 745 AGLQPSVDYSTF--------EVGDQKL------FFVHAHIRESLLGILLRDWLAMRKAVR 790
Query: 1371 QAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTL 1430
I P + +L + +Q A+K+I N YG+T +G +PC +A ++ GR L
Sbjct: 791 ARIPTSTPEEAVL---LDKQQSAIKVICNSVYGFTGVA-NGLLPCLRIAATVTTIGRDML 846
Query: 1431 EK---------------------AISFVNENEKWKAKVIYGDTD 1453
K AI F N ++ + +VIYGDTD
Sbjct: 847 LKTRDYVHSRWATRELLEDNFPGAIGFRN-HKPYSVRVIYGDTD 889
>sp|P61876|DPOL_PYRWO DNA polymerase OS=Pyrococcus woesei GN=pol PE=1 SV=1
Length = 775
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 114/439 (25%), Positives = 186/439 (42%), Gaps = 82/439 (18%)
Query: 1021 VFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLE 1080
V V S E + F++I+ DPDI++ ++ +LA+RA LGI L
Sbjct: 181 VEVVSSEREMIKRFLRIIREKDPDIIVTYNGDSFDFPYLAKRAEKLGIKLT--------- 231
Query: 1081 SKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWR 1140
I SE + I D + + V GRI +++
Sbjct: 232 --IGRDGSEPKMQRIGD---------------------------MTAVEVKGRIHFDLYH 262
Query: 1141 LMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNL 1200
++ + L YT+EAV E + + + + K + SG R +Y + AK
Sbjct: 263 VITRTINLPTYTLEAVYEAIFGKPKEKVYADEIAKAWESGENLER--VAKYSMEDAKATY 320
Query: 1201 EIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNHQVAS 1260
E+ + + +L+R+ G + V + VE LLR A+ +N +A + + +
Sbjct: 321 ELGKEF--LPMEIQLSRLVGQPLWDVSRSSTGNLVEWFLLRKAYERNEVAPNKPSEEEYQ 378
Query: 1261 QPAMECLP--LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLG 1318
+ E V EPE G + + +V LDF++LYPS++I +N+
Sbjct: 379 RRLRESYTGGFVKEPEKGLWEN-IVYLDFRALYPSIIITHNVS----------------- 420
Query: 1319 VSSFRPDLHVLRDLKDELLIPPNGVMY---VPPKVRKGVLPRLLEEILSTRIMVKQAIKK 1375
PD L K+ + P G + +P G +P LL +L R +K +K+
Sbjct: 421 -----PDTLNLEGCKNYDIAPQVGHKFCKDIP-----GFIPSLLGHLLEERQKIKTKMKE 470
Query: 1376 LA-PSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAI 1434
P ++IL + RQ A+KL+AN YGY R C E A+S+ GR +E +
Sbjct: 471 TQDPIEKIL---LDYRQKAIKLLANSFYGYYGYA-KARWYCKECAESVTAWGRKYIE--L 524
Query: 1435 SFVNENEKWKAKVIYGDTD 1453
+ EK+ KV+Y DTD
Sbjct: 525 VWKELEEKFGFKVLYIDTD 543
>sp|P61875|DPOL_PYRFU DNA polymerase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 /
JCM 8422 / Vc1) GN=pol PE=1 SV=1
Length = 775
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 114/439 (25%), Positives = 186/439 (42%), Gaps = 82/439 (18%)
Query: 1021 VFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLE 1080
V V S E + F++I+ DPDI++ ++ +LA+RA LGI L
Sbjct: 181 VEVVSSEREMIKRFLRIIREKDPDIIVTYNGDSFDFPYLAKRAEKLGIKLT--------- 231
Query: 1081 SKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWR 1140
I SE + I D + + V GRI +++
Sbjct: 232 --IGRDGSEPKMQRIGD---------------------------MTAVEVKGRIHFDLYH 262
Query: 1141 LMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNL 1200
++ + L YT+EAV E + + + + K + SG R +Y + AK
Sbjct: 263 VITRTINLPTYTLEAVYEAIFGKPKEKVYADEIAKAWESGENLER--VAKYSMEDAKATY 320
Query: 1201 EIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNHQVAS 1260
E+ + + +L+R+ G + V + VE LLR A+ +N +A + + +
Sbjct: 321 ELGKEF--LPMEIQLSRLVGQPLWDVSRSSTGNLVEWFLLRKAYERNEVAPNKPSEEEYQ 378
Query: 1261 QPAMECLP--LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLG 1318
+ E V EPE G + + +V LDF++LYPS++I +N+
Sbjct: 379 RRLRESYTGGFVKEPEKGLWEN-IVYLDFRALYPSIIITHNVS----------------- 420
Query: 1319 VSSFRPDLHVLRDLKDELLIPPNGVMY---VPPKVRKGVLPRLLEEILSTRIMVKQAIKK 1375
PD L K+ + P G + +P G +P LL +L R +K +K+
Sbjct: 421 -----PDTLNLEGCKNYDIAPQVGHKFCKDIP-----GFIPSLLGHLLEERQKIKTKMKE 470
Query: 1376 LA-PSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAI 1434
P ++IL + RQ A+KL+AN YGY R C E A+S+ GR +E +
Sbjct: 471 TQDPIEKIL---LDYRQKAIKLLANSFYGYYGYA-KARWYCKECAESVTAWGRKYIE--L 524
Query: 1435 SFVNENEKWKAKVIYGDTD 1453
+ EK+ KV+Y DTD
Sbjct: 525 VWKELEEKFGFKVLYIDTD 543
>sp|P27172|DPOL_MUHVS DNA polymerase OS=Murid herpesvirus 1 (strain Smith) GN=UL54 PE=3
SV=1
Length = 1097
Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 110/484 (22%), Positives = 196/484 (40%), Gaps = 91/484 (18%)
Query: 1016 IPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDIS 1075
IPD K++ E + F L + P+ + G++I G + ++ RA L + +
Sbjct: 355 IPDVKIYTFPSEYEMLRGFFIFLSWYSPEFITGYNINGFDIKYILTRAEKLYKMDVGQFT 414
Query: 1076 RTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIV 1135
+ ++ E + G +G ++ + G +V
Sbjct: 415 KLRRGGRMFVFSPEKGKAG-------------------------FGTSNTVKVFWSGTVV 449
Query: 1136 LNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGR 1195
L+++ + + Y ++ +AE L++K + ++ + F++G R +Y +
Sbjct: 450 LDMYPVCTAKASSPNYKLDTMAEIYLKKKKDDLSYKEIPVQFSAG-DEGRAPGGKYCLQD 508
Query: 1196 AKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYL------ 1249
A L E+ L + +AR+ I V+ G Q R+ + LL ++ +
Sbjct: 509 AVLVRELFEMLAFHFEAAAIARLARIPLRKVIFDGQQIRIYTCLLEECSGRDMILPNMPS 568
Query: 1250 -------------------AISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSL 1290
S G + S+ V+EPE GF+ PV V DF SL
Sbjct: 569 LGHGAAAAIEEAAAGGEGDETSEGENSNNSRTVGYQGATVLEPECGFHHVPVCVFDFASL 628
Query: 1291 YPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLR-DLKDELLIPPNGVMYVPPK 1349
YPS++++ NLC+ T L + P P+ VLR ++ D+ +V
Sbjct: 629 YPSIIMSNNLCYSTLLVEGSPEV----------PEKDVLRVEIGDQCH------RFVREN 672
Query: 1350 VRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGF 1409
V + +L LL L+ R +V++A+K+ Q + I + +QLALK+ N YG+T
Sbjct: 673 VHRSLLAELLVRWLTQRKLVREAMKQCTNEMQRM--IMDKQQLALKVTCNAFYGFTGVA- 729
Query: 1410 SGRMPCAELADSIVQCGRSTLEKAISFVNEN--------------------EKWKAKVIY 1449
+G +PC +A SI + GR L + + E + K+IY
Sbjct: 730 AGMLPCLPIAASITKIGRDMLLATAGHIEDRCNRPDFLRTVLGLPPEAIDPEALRVKIIY 789
Query: 1450 GDTD 1453
GDTD
Sbjct: 790 GDTD 793
>sp|O48653|DPOLA_ORYSJ DNA polymerase alpha catalytic subunit OS=Oryza sativa subsp.
japonica GN=Os01g0868300 PE=2 SV=2
Length = 1534
Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 123/470 (26%), Positives = 188/470 (40%), Gaps = 108/470 (22%)
Query: 1025 SKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESKIA 1084
S E L + + L D D+L+G +I G L L RA + + + SKI
Sbjct: 655 SSERALLNRLMIELSKLDCDVLVGHNISGFDLDVLLHRAQTCKVP-------SNMWSKIG 707
Query: 1085 AGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLH--VGGRIVLNVWRLM 1142
+ R N L +G + G+ + GR++ + +
Sbjct: 708 RLRRSVMPRLTKGNTL-------------------YGSGASPGIMSCIAGRLLCDTYLCS 748
Query: 1143 RGEVKLNMYTVEAVAETVLRRKIPSI-PFRVLTKWFASGPGRARYRCVEYVVGRAKLNLE 1201
R +K Y++ +AET L+++ + P + + +SG A + VEY A L LE
Sbjct: 749 RDLLKEVSYSLTQLAETQLKKERKEVSPHDIPPMFQSSG---ALLKLVEYGETDACLALE 805
Query: 1202 IMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYL------------ 1249
+M L ++ T +L + G + L RVE +LL H + ++
Sbjct: 806 LMFHLSVLPLTRQLTNISGNLWGKTLQGSRAQRVEYLLLHAFHARKFIVPDKFARSKEFN 865
Query: 1250 --------------------AISPGNHQVASQPAMECLP-----LVMEPESGFYADPVVV 1284
+I H V Q + P LV+EP+ G Y V++
Sbjct: 866 STKRKMNPDTEAARPDEADPSIDDEGHHV-DQGKTKKGPSYAGGLVLEPKKGLYDKYVLL 924
Query: 1285 LDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVM 1344
LDF SLYPS++ YN+CF T + S + + PN
Sbjct: 925 LDFNSLYPSIIQEYNICFTT----VDRSADGNV----------------------PN--- 955
Query: 1345 YVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGY 1404
+P GVLP LL+ ++ R MVK +K + + + F+ +Q ALKL AN YG
Sbjct: 956 -LPASKTTGVLPELLKSLVERRRMVKSWLKT---ASGLKRQQFDIQQQALKLTANSMYG- 1010
Query: 1405 TAAGFSG-RMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
GFS R LA+ I GR L+ + V N +VIYGDTD
Sbjct: 1011 -CLGFSNSRFYAKPLAELITLQGREILQNTVDLVQNN--LNLEVIYGDTD 1057
>sp|Q54SV8|DPOLA_DICDI DNA polymerase alpha catalytic subunit OS=Dictyostelium discoideum
GN=pola1 PE=3 SV=1
Length = 1509
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 111/459 (24%), Positives = 185/459 (40%), Gaps = 115/459 (25%)
Query: 1021 VFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLE 1080
V +C+ E +L S F + + + DPD+ G +I G + + +R L +
Sbjct: 677 VTICTSERNLLSFFCETVLNADPDVFAGHNIIGYDIEVILDRLEKLKVM----------- 725
Query: 1081 SKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEW---GRTHASGL----HVGGR 1133
EW GR S H+ GR
Sbjct: 726 --------------------------------------EWAFIGRLKRSSFDRFNHISGR 747
Query: 1134 IVLNVWRLMRGEV-KLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYV 1192
++ + + + + + K Y++ +++ L P I + + +F + + +E
Sbjct: 748 LICDSYLVCKEFLPKEKNYSLVELSKNQLSINKPEINYLSIEPYFETTKKLNIF--IEIN 805
Query: 1193 VGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYL--- 1249
+ ++ +L + T +L + G + L R+E +LL H + YL
Sbjct: 806 ENDCYIIFLLIFKLLVFPLTKQLTNLAGNQWDKSLKSNRAERIEYLLLHNFHEKKYLLPD 865
Query: 1250 --------------AISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMM 1295
A NH S LV++P+ FY VV+LDF SLYPS++
Sbjct: 866 KIYQKSSSSGGGGGAKDKDNHAAYSGG------LVLDPKIDFYDRYVVLLDFNSLYPSII 919
Query: 1296 IAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVL 1355
YN+CF T ++ + D D K E +PP P + KG+L
Sbjct: 920 QEYNVCFTT--------------INRVKRD-----DGKWEEAMPP------PSSIEKGIL 954
Query: 1356 PRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFS-GRMP 1414
P++L ++S R +K+ +++ +I+ ++ +Q A+KLIAN YG GFS R
Sbjct: 955 PKVLHGLVSKRREIKKRMEQ--EKNKIIKAQYDIQQQAVKLIANSMYG--CLGFSHSRFY 1010
Query: 1415 CAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
LA+ + + GR L+K S VN K VIYGDTD
Sbjct: 1011 ALPLAELVTRKGRENLQKGASIVN---KMCYDVIYGDTD 1046
>sp|O89042|DPOLA_RAT DNA polymerase alpha catalytic subunit (Fragment) OS=Rattus
norvegicus GN=Pola1 PE=2 SV=1
Length = 1451
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 112/467 (23%), Positives = 190/467 (40%), Gaps = 85/467 (18%)
Query: 1011 RSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGL 1070
+ ++ + +V V + E L F+ + DPDIL+G +I G L L +R +
Sbjct: 606 KEVIKKKNMEVEVAATERTLLGFFLAKVHKLDPDILVGHNICGFELEVLLQRINECKVPF 665
Query: 1071 LNDISRTPLESKIAAGD-SEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLH 1129
+ I R + G S ER T
Sbjct: 666 WSKIGRLRRSNMPKLGSRSGFGERNAT--------------------------------- 692
Query: 1130 VGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCV 1189
GR++ +V ++ + Y + + + +L+ + IP + + S P Y +
Sbjct: 693 -CGRMICDVEISVKELIHCKSYHLSELVQQILKTERIVIPTENIRNMY-SEPSHLLY-LL 749
Query: 1190 EYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYL 1249
E++ A+ L+IM +L+++ ++ + G L G R E +LL + NY+
Sbjct: 750 EHIWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYI 809
Query: 1250 A----------ISPGN-----------HQVASQPAMECLPLVMEPESGFYADPVVVLDFQ 1288
PG+ ++ + A LV++P+ GFY +++LDF
Sbjct: 810 VPDKQIFRKPQQKPGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFN 869
Query: 1289 SLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVP- 1347
SLYPS++ +N+CF T R L+ +DE + +P
Sbjct: 870 SLYPSIIQEFNICFTTVQ----------------RVASETLKATEDE---EQEQIPELPD 910
Query: 1348 PKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAA 1407
P + G+LPR + +++ R VKQ +K+ + ++ + ++ RQ ALKL AN YG
Sbjct: 911 PNLDMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQ-YDIRQKALKLTANSMYG--CL 967
Query: 1408 GFS-GRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
GFS R LA + GR L V +K +VIYGDTD
Sbjct: 968 GFSYSRFYAKPLAALVTYKGREILMHTKEMV---QKMNLEVIYGDTD 1011
>sp|Q94636|DPOLA_OXYNO DNA polymerase alpha catalytic subunit OS=Oxytricha nova PE=3 SV=1
Length = 1492
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 115/478 (24%), Positives = 191/478 (39%), Gaps = 80/478 (16%)
Query: 1009 HQRSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGI 1068
++R+ D + E L F+ + DPD+++ ++ GG L R L I
Sbjct: 589 YERAFRDKKDSFIQFFQHERQLIEAFVAKIYQLDPDLMVAHNLCGGMFDLLLARIQMLKI 648
Query: 1069 GLLNDISRTPL---------ESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDE 1119
+ I R +S G S+ R +T L +V L AK+ I E
Sbjct: 649 SHWSRIGRLKKNQIPNKKSDQSGANYGGSQWIPRQVTCGRL---LVDTFLTAKELIRETN 705
Query: 1120 WGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFAS 1179
+ TH + ++ L R+ + L + V+ + K F
Sbjct: 706 YDLTHLA------KVQLQKDRIDFDDDLLPTFYVQ------------------MAKLF-- 739
Query: 1180 GPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESML 1239
+ +++ A L L++MN L +I T +L + G +F L R E +L
Sbjct: 740 -------QLIDHTEKDAYLTLQLMNHLQVIPLTKQLTNIAGNLWFRSLQNARAERNEMLL 792
Query: 1240 LRLAHTQNYLAISPGNHQVASQPAMECL------------------------PLVMEPES 1275
L + + + P Q+ ++ + + LV+EP++
Sbjct: 793 LHEFKKKKF--VLPDKKQLNAKDLKKNMFADEYEEGDGKTKGGKRKKAAYAGGLVIEPKA 850
Query: 1276 GFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDE 1335
GFY + +++LDF SLYPS++ YNLCF T + P+K S + + ++E
Sbjct: 851 GFYDNIILLLDFNSLYPSIIQEYNLCFTTVNRR--PTK--NFDGSEMKNQYKKGENGEEE 906
Query: 1336 LLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALK 1395
+ I + ++ VLP +L +++ R VK +K + RQ A+K
Sbjct: 907 VDIEEADLPDKNVNLKDAVLPMVLRDLVQKRKAVKDKMK--TEKDHVKLSQLEIRQKAIK 964
Query: 1396 LIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
L AN YG G S R +A I + GR TL + + EN K V+YGDTD
Sbjct: 965 LTANSMYGCLGFG-SSRFHAQAIAALITRTGRETLLRTKD-IAEN-KLGFNVVYGDTD 1019
>sp|Q9FHA3|DPOLA_ARATH DNA polymerase alpha catalytic subunit OS=Arabidopsis thaliana
GN=POLA PE=3 SV=2
Length = 1524
Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 120/476 (25%), Positives = 189/476 (39%), Gaps = 108/476 (22%)
Query: 1019 CKVF-VCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRT 1077
C V + + E L + L D DIL+G +I G L L +RA + ++
Sbjct: 640 CNVLSIENSERALLNRLFLELNKLDSDILVGHNISGFDLDVLLQRAQACKV-------QS 692
Query: 1078 PLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLH--VGGRIV 1135
+ SKI + S + K +G GL + GR++
Sbjct: 693 SMWSKIGR-------------------LKRSFMPK-LKGNSNYGSGATPGLMSCIAGRLL 732
Query: 1136 LNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGR 1195
+ R +K Y++ +++T L R I + K F S + +E
Sbjct: 733 CDTDLCSRDLLKEVSYSLTDLSKTQLNRDRKEIAPNDIPKMFQSS--KTLVELIECGETD 790
Query: 1196 AKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYL---AIS 1252
A L++E+M L ++ T +L + G + L R+E LL H++ ++ IS
Sbjct: 791 AWLSMELMFHLSVLPLTLQLTNISGNLWGKTLQGARAQRIEYYLLHTFHSKKFILPDKIS 850
Query: 1253 PGNHQV-ASQPAMECLP---------------------------------LVMEPESGFY 1278
++ +S+ M+ P LV+EP+ G Y
Sbjct: 851 QRMKEIKSSKRRMDYAPEDRNVDELDADLTLENDPSKGSKTKKGPAYAGGLVLEPKRGLY 910
Query: 1279 ADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLI 1338
V++LDF SLYPS++ YN+CF T +P E
Sbjct: 911 DKYVLLLDFNSLYPSIIQEYNICFTT-----IPRSE------------------------ 941
Query: 1339 PPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIA 1398
+GV +P G+LP+L+E ++S R VK +KK + + + RQ ALKL A
Sbjct: 942 --DGVPRLPSSQTPGILPKLMEHLVSIRKSVKLKMKK---ETGLKYWELDIRQQALKLTA 996
Query: 1399 NVTYGYTAAGFSG-RMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
N YG GFS R LA+ I GR L++ + V + +VIYGDTD
Sbjct: 997 NSMYG--CLGFSNSRFYAKPLAELITLQGRDILQRTVDLVQNH--LNLEVIYGDTD 1048
>sp|Q9HH06|DPOL_PYRGL DNA polymerase OS=Pyrococcus glycovorans GN=pol PE=3 SV=1
Length = 775
Score = 97.4 bits (241), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 113/445 (25%), Positives = 189/445 (42%), Gaps = 94/445 (21%)
Query: 1021 VFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLE 1080
V V S E + F+K++ DPD+++ ++ L +L +RA LGI L + R E
Sbjct: 181 VEVVSSEREMIKRFLKVIREKDPDVIITYNGDSFDLPYLVKRAEKLGIKL--PLGRDGSE 238
Query: 1081 SKIAA-GDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVW 1139
K+ GD + + + GRI +++
Sbjct: 239 PKMQRLGD-------------------------------------MTAVEIKGRIHFDLY 261
Query: 1140 RLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLN 1199
++R + L YT+EAV E + + + + + + +G G R +Y + AK+
Sbjct: 262 HVIRRTINLPTYTLEAVYEAIFGKPKEKVYAHEIAEAWETGKGLE--RVAKYSMEDAKVT 319
Query: 1200 LEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNHQVA 1259
E+ + ++L+R+ G + V + VE LLR A+ +N LA + + +
Sbjct: 320 YELGREF--FPMEAQLSRLVGQPLWDVSRSSTGNLVEWYLLRKAYERNELAPNKPDEREY 377
Query: 1260 SQPAMECLP--LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTL 1317
+ E V EPE G + + +V LDF+SLYPS++I +N+ P N
Sbjct: 378 ERRLRESYAGGYVKEPEKGLW-EGLVSLDFRSLYPSIIITHNVS---------PDTLNRE 427
Query: 1318 GVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRK-------GVLPRLLEEILSTRIMVK 1370
G + V P+V+ G +P LL+ +L R +K
Sbjct: 428 GCREYD----------------------VAPEVKHKFCKDFPGFIPSLLKRLLDERQEIK 465
Query: 1371 QAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTL 1430
+ +K A I ++ + RQ A+K++AN YGY R C E A+S+ GR +
Sbjct: 466 RKMK--ASKDPIEKKMLDYRQRAIKILANSYYGYYGYA-KARWYCKECAESVTAWGREYI 522
Query: 1431 EKAISFVNE--NEKWKAKVIYGDTD 1453
E FV + EK+ KV+Y DTD
Sbjct: 523 E----FVRKELEEKFGFKVLYIDTD 543
>sp|Q7SIG7|DPOL_DESST DNA polymerase OS=Desulfurococcus sp. (strain Tok) GN=pol PE=1 SV=1
Length = 773
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 108/438 (24%), Positives = 183/438 (41%), Gaps = 75/438 (17%)
Query: 1024 CSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESKI 1083
S E + F+K++ DPD+L+ ++ +L +R+ LG+ + + R E KI
Sbjct: 184 VSTEKEMIKRFLKVIQEKDPDVLITYNGDNFDFAYLKKRSEMLGVKFI--LGRDGSEPKI 241
Query: 1084 A-AGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWRLM 1142
GD + V GRI +++ ++
Sbjct: 242 QRMGDR-------------------------------------FAVEVKGRIHFDLYPVI 264
Query: 1143 RGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEI 1202
R + L YT+E V E V + + + + + SG G R Y + AK E+
Sbjct: 265 RRTINLPTYTLETVYEPVFGQPKEKVYAEEIARAWESGEGLE--RVARYSMEDAKATYEL 322
Query: 1203 MNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAIS-PGNHQVASQ 1261
+ ++L+R+ G + V + VE LLR A+ +N +A + P ++A +
Sbjct: 323 GKEF--FPMEAQLSRLVGQSLWDVSRSSTGNLVEWFLLRKAYERNDVAPNKPDERELARR 380
Query: 1262 PAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSS 1321
V EPE G + + +V LD++SLYPS++I +N+ P N G
Sbjct: 381 TESYAGGYVKEPEKGLWEN-IVYLDYKSLYPSIIITHNVS---------PDTLNREGCRE 430
Query: 1322 FRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQ 1381
+ + P G + K G +P LL ++L R VK+ +K A
Sbjct: 431 YD-------------VAPQVGHRFC--KDFPGFIPSLLGDLLEERQKVKKKMK--ATVDP 473
Query: 1382 ILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENE 1441
I ++ + RQ A+K++AN A + R C E A+S+ GR +E + + E
Sbjct: 474 IERKLLDYRQRAIKILANSY-YGYYAYANARWYCRECAESVTAWGRQYIETTMREI--EE 530
Query: 1442 KWKAKVIYGDTDRYTVCI 1459
K+ KV+Y DTD + I
Sbjct: 531 KFGFKVLYADTDGFFATI 548
>sp|P09884|DPOLA_HUMAN DNA polymerase alpha catalytic subunit OS=Homo sapiens GN=POLA1 PE=1
SV=2
Length = 1462
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 111/466 (23%), Positives = 194/466 (41%), Gaps = 83/466 (17%)
Query: 1011 RSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGL 1070
+ ++ + KV V + E L F+ + DPDI++G +I G L L +R
Sbjct: 599 KEVIEKKNVKVEVAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRI------- 651
Query: 1071 LNDISRTPLESKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHV 1130
++ + P SKI R NM L + +G +A+
Sbjct: 652 --NVCKAPHWSKIG--------RLKRSNM-------PKLGGRSG-----FGERNATC--- 686
Query: 1131 GGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVE 1190
GR++ +V + ++ Y + + + +L+ + IP + ++ + Y +E
Sbjct: 687 -GRMICDVEISAKELIRCKSYHLSELVQQILKTERVVIPMENIQNMYSES-SQLLY-LLE 743
Query: 1191 YVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLA 1250
+ AK L+IM +L+++ ++ + G L G R E +LL + NY+
Sbjct: 744 HTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIV 803
Query: 1251 ISP---------------------GNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQS 1289
++ + A LV++P+ GFY +++LDF S
Sbjct: 804 PDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNS 863
Query: 1290 LYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVP-P 1348
LYPS++ +N+CF T V + + + ++ IP +P P
Sbjct: 864 LYPSIIQEFNICFTT--------------VQRVASEAQKVTEDGEQEQIPE-----LPDP 904
Query: 1349 KVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAG 1408
+ G+LPR + +++ R VKQ +K+ + ++ + ++ RQ ALKL AN YG G
Sbjct: 905 SLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQ-YDIRQKALKLTANSMYG--CLG 961
Query: 1409 FS-GRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
FS R LA + GR L V +K +VIYGDTD
Sbjct: 962 FSYSRFYAKPLAALVTYKGREILMHTKEMV---QKMNLEVIYGDTD 1004
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 559,068,528
Number of Sequences: 539616
Number of extensions: 24441695
Number of successful extensions: 57605
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 56985
Number of HSP's gapped (non-prelim): 397
length of query: 1459
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1329
effective length of database: 121,419,379
effective search space: 161366354691
effective search space used: 161366354691
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)