Your job contains 1 sequence.
>000502
MADSQPDSNIFSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTC
LHIHRALPYLYVPCADIPVQLRQEDDGYMHAISLALEKALKVKGSAGSKRQHVHECSLVR
AKKGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFRHPVPDAFFPRKFNYS
SKQASADFQVIGCGSYPMHLMGHQIKTLSGLNIKVFLSLKEMLQWMVCLIHCSATDIFAS
SIFLYDDCVGDIVNQRLMMYTSLSQTRSDVKMVQSLVPIWEVCSHPIYKLFNIQYIYPLV
NFTTFQEEYERTGINEAVMAPDPGKPRPQDVLRTLSLGLEFENVLMEMCGEGQETVSSFG
NDFEVLKSVACATDEENLIKLGPANYDYKDPEYLTCLKEGKILSALAPQGLVHQEKISLM
PSKGKDTCPELPFGGEIHSSEMVGAPGQKEPLIFGIDIPQATDTEALGLLKWLATSQAAE
DLNSDDELLHETILSPLLPETTIDKVLEKANTDYERESQKECQDILDSIEDEVNVDGLEE
RNSSTVDPSNHPETSSHKKIPQIDGSSDDLYLLPCSGSSGNSSKKEIKSESIRSFQHQVP
QDTWTNAASKCNVKKKLWGSLPFSVSEQFNKDIETVSCNISSLCVTEVKDHGATGSLVGN
ELGKSFDALEREDADAHDIKEATAVTGGSVRDLMRRKRSYRESSECEPPRVKRVNVTGEQ
KNALSMCEKQLEFDTLQNDECEKCPLKGGTGISTVCKENMESPSPFDTKKEDASVSVGDW
KADNCKESKFDATSVEPRELQSDHPNNNDSNLNQGSLTGVPTLYLNDGSCLYMLRPPFSP
PSVDSVHKWLLHDDKGASGDMDKASVEHSSLKGSDIRPVLEEMHQEADEMISTEPTPDLN
GVTAIMHNEGHIAEPNACADCLQDISQISGPDGRSKPTPLSQIGFQDPASAGAGEQLTLL
SIEVQAESRGDLRPDPRYDSINVVALAFENDSDHAVEIYVLLYCKSESHQRSLVGIPDCK
VFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLE
SKIAAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWR
LMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNL
EIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNHQVAS
QPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVS
SFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQ
QILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNEN
EKWKAKVIYGDTDRYTVCI
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000502
(1459 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1LMP6 - symbol:Rev3l "DNA polymerase" species:... 907 1.0e-134 7
UNIPROTKB|F1M8G6 - symbol:Rev3l "DNA polymerase" species:... 907 1.1e-134 7
MGI|MGI:1337131 - symbol:Rev3l "REV3-like, catalytic subu... 911 7.6e-134 8
UNIPROTKB|E1BPY8 - symbol:REV3L "DNA polymerase" species:... 912 3.8e-133 7
ZFIN|ZDB-GENE-050302-55 - symbol:rev3l "REV3-like, cataly... 892 5.5e-132 7
UNIPROTKB|F1P7D5 - symbol:REV3L "DNA polymerase" species:... 904 2.1e-131 7
UNIPROTKB|O60673 - symbol:REV3L "DNA polymerase zeta cata... 946 1.4e-122 6
UNIPROTKB|F1NQT0 - symbol:REV3L "DNA polymerase" species:... 897 1.0e-120 7
UNIPROTKB|G4NL37 - symbol:MGG_02986 "DNA polymerase" spec... 895 1.4e-117 5
ASPGD|ASPL0000070569 - symbol:uvsI species:162425 "Emeric... 916 3.5e-115 5
UNIPROTKB|A8IZI8 - symbol:POLZ1 "DNA polymerase" species:... 1028 8.0e-115 2
UNIPROTKB|Q8X1U8 - symbol:UPR1 "DNA polymerase" species:5... 893 1.2e-112 7
DICTYBASE|DDB_G0271608 - symbol:rev3 "DNA polymerase zeta... 657 7.7e-112 6
UNIPROTKB|F1P7E8 - symbol:REV3L "DNA polymerase" species:... 904 7.8e-110 7
FB|FBgn0002891 - symbol:mus205 "mutagen-sensitive 205" sp... 816 3.5e-108 5
SGD|S000006088 - symbol:REV3 "Catalytic subunit of DNA po... 876 3.4e-104 5
UNIPROTKB|Q75F27 - symbol:AGOS_AAL099C "DNA polymerase" s... 809 1.0e-101 4
UNIPROTKB|I3L6U8 - symbol:LOC100737059 "DNA polymerase" s... 909 1.1e-93 2
POMBASE|SPAC688.10 - symbol:rev3 "DNA polymerase zeta cat... 761 2.0e-89 3
UNIPROTKB|Q233J3 - symbol:TTHERM_00391570 "DNA polymerase... 581 1.0e-63 5
WB|WBGene00021344 - symbol:Y37B11A.2 species:6239 "Caenor... 655 3.4e-63 2
UNIPROTKB|Q9BKQ3 - symbol:Y37B11A.2 "DNA polymerase" spec... 655 3.4e-63 2
FB|FBgn0263600 - symbol:DNApol-delta "DNA-polymerase-delt... 411 5.0e-44 3
GENEDB_PFALCIPARUM|PF10_0362 - symbol:PF10_0362 "DNA poly... 255 1.9e-38 5
UNIPROTKB|Q8IJ38 - symbol:PF10_0362 "DNA polymerase" spec... 255 1.9e-38 5
UNIPROTKB|Q22HL1 - symbol:TTHERM_00636920 "DNA polymerase... 227 2.2e-37 5
ZFIN|ZDB-GENE-060429-1 - symbol:pold1 "polymerase (DNA di... 321 2.1e-36 4
POMBASE|SPBC336.04 - symbol:cdc6 "DNA polymerase delta ca... 354 1.1e-34 3
UNIPROTKB|I3LER4 - symbol:I3LER4 "Uncharacterized protein... 379 1.4e-33 1
UNIPROTKB|Q8X0N7 - symbol:B10H4.020 "DNA polymerase" spec... 360 5.0e-33 4
UNIPROTKB|E2R5W5 - symbol:POLD1 "DNA polymerase" species:... 295 8.0e-32 4
UNIPROTKB|J9NS34 - symbol:POLD1 "DNA polymerase" species:... 295 9.2e-32 4
UNIPROTKB|P28339 - symbol:POLD1 "DNA polymerase delta cat... 296 1.3e-31 4
WB|WBGene00008645 - symbol:F10C2.4 species:6239 "Caenorha... 239 1.5e-31 5
UNIPROTKB|P90829 - symbol:F10C2.4 "DNA polymerase delta c... 239 1.5e-31 5
UNIPROTKB|P28340 - symbol:POLD1 "DNA polymerase delta cat... 294 2.1e-31 4
SGD|S000002260 - symbol:POL3 "Catalytic subunit of DNA po... 356 2.2e-31 4
UNIPROTKB|F1RH32 - symbol:POLD1 "DNA polymerase" species:... 290 2.8e-31 4
UNIPROTKB|E1BNZ6 - symbol:E1BNZ6 "DNA polymerase" species... 296 5.1e-31 4
RGD|621839 - symbol:Pold1 "polymerase (DNA directed), del... 287 1.2e-30 4
UNIPROTKB|O54747 - symbol:Pold1 "DNA polymerase delta cat... 287 1.2e-30 4
MGI|MGI:97741 - symbol:Pold1 "polymerase (DNA directed), ... 291 1.4e-30 4
UNIPROTKB|Q755K6 - symbol:AGOS_AFL189W "DNA polymerase" s... 349 4.9e-30 5
UNIPROTKB|Q8TSB3 - symbol:MA_0885 "DNA polymerase" specie... 198 1.5e-29 4
ASPGD|ASPL0000065466 - symbol:AN7325 species:162425 "Emer... 300 7.9e-29 4
UNIPROTKB|Q5AWK5 - symbol:AN7325.2 "DNA polymerase" speci... 300 7.9e-29 4
UNIPROTKB|Q9LRE6 - symbol:POLD1 "DNA polymerase delta cat... 305 9.5e-29 3
UNIPROTKB|Q7RSZ8 - symbol:PY00203 "DNA polymerase" specie... 303 3.5e-27 4
GENEDB_PFALCIPARUM|PF10_0165 - symbol:PF10_0165 "DNA poly... 305 8.9e-27 5
UNIPROTKB|Q7KQL4 - symbol:PF10_0165 "DNA polymerase" spec... 305 8.9e-27 5
UNIPROTKB|Q0D7U2 - symbol:Os07g0209500 "Os07g0209500 prot... 291 3.4e-24 1
UNIPROTKB|F1RZP3 - symbol:F1RZP3 "Uncharacterized protein... 304 3.7e-24 1
UNIPROTKB|A8IZI7 - symbol:CHLREDRAFT_117850 "Predicted pr... 281 3.9e-23 1
DICTYBASE|DDB_G0285381 - symbol:polD1 "DNA polymerase del... 225 2.2e-22 4
UNIPROTKB|A8HPJ0 - symbol:POLD1 "DNA polymerase" species:... 219 3.0e-21 4
UNIPROTKB|O48653 - symbol:LOC_Os01g64820 "DNA polymerase ... 140 2.9e-16 5
UNIPROTKB|Q0JHE4 - symbol:Os01g0868300 "DNA polymerase" s... 140 3.7e-16 5
UNIPROTKB|A8IXV5 - symbol:CHLREDRAFT_172920 "Predicted pr... 153 9.0e-13 2
UNIPROTKB|Q7RBM5 - symbol:PY06115 "DNA polymerase" specie... 208 1.5e-12 1
UNIPROTKB|F1NR19 - symbol:POLA1 "DNA polymerase" species:... 128 3.8e-12 6
MGI|MGI:99660 - symbol:Pola1 "polymerase (DNA directed), ... 129 4.8e-12 4
ZFIN|ZDB-GENE-030114-9 - symbol:pola1 "polymerase (DNA di... 119 5.9e-12 5
UNIPROTKB|Q59J88 - symbol:Q59J88 "DNA polymerase" species... 120 7.6e-12 4
UNIPROTKB|I3LIH4 - symbol:POLA1 "DNA polymerase" species:... 126 8.9e-12 3
SGD|S000005046 - symbol:POL1 "Catalytic subunit of the DN... 118 1.1e-11 4
ASPGD|ASPL0000000737 - symbol:AN10755 species:162425 "Eme... 122 3.9e-11 4
UNIPROTKB|Q5B0J8 - symbol:AN5932.2 "DNA polymerase" speci... 122 1.5e-10 4
UNIPROTKB|Q7SBT9 - symbol:NCU07870 "DNA polymerase" speci... 128 4.8e-10 4
UNIPROTKB|Q9DE46 - symbol:pola1 "DNA polymerase alpha cat... 121 6.5e-10 5
UNIPROTKB|Q23AJ0 - symbol:TTHERM_00424700 "DNA polymerase... 170 7.5e-10 3
UNIPROTKB|I3LKI3 - symbol:I3LKI3 "Uncharacterized protein... 145 3.1e-08 3
DICTYBASE|DDB_G0282191 - symbol:polA1 "DNA polymerase alp... 153 1.1e-07 3
UNIPROTKB|Q755Y6 - symbol:AER381C "DNA polymerase" specie... 111 5.3e-07 4
UNIPROTKB|P09884 - symbol:POLA1 "DNA polymerase alpha cat... 130 6.1e-07 4
UNIPROTKB|A6NMQ1 - symbol:POLA1 "DNA polymerase" species:... 130 6.2e-07 4
UNIPROTKB|A8J9T2 - symbol:POLA1 "DNA polymerase" species:... 159 8.8e-07 4
UNIPROTKB|Q9NAH1 - symbol:Y47D3A.29 "DNA polymerase" spec... 111 1.1e-06 5
WB|WBGene00012936 - symbol:Y47D3A.29a species:6239 "Caeno... 111 1.2e-06 5
UNIPROTKB|C7IVS4 - symbol:Y47D3A.29 "DNA polymerase" spec... 111 1.2e-06 5
UNIPROTKB|E2QVU2 - symbol:POLA1 "Uncharacterized protein"... 127 1.4e-06 5
CGD|CAL0002431 - symbol:POL1 species:5476 "Candida albica... 113 1.7e-06 4
UNIPROTKB|F6Y1C9 - symbol:POLA1 "DNA polymerase" species:... 127 2.0e-06 5
RGD|621816 - symbol:Pola1 "polymerase (DNA directed), alp... 154 2.4e-06 4
UNIPROTKB|O89042 - symbol:Pola1 "DNA polymerase alpha cat... 154 2.4e-06 4
POMBASE|SPAC3H5.06c - symbol:pol1 "DNA polymerase alpha c... 110 3.0e-06 5
UNIPROTKB|A6V6S5 - symbol:polB "DNA polymerase" species:3... 104 2.2e-05 3
UNIPROTKB|Q59J90 - symbol:Q59J90 "DNA polymerase" species... 130 2.9e-05 4
UNIPROTKB|E1BJF4 - symbol:POLA1 "DNA polymerase" species:... 112 0.00010 4
UNIPROTKB|Q9KSP4 - symbol:VC_1212 "DNA polymerase" specie... 98 0.00035 3
TIGR_CMR|VC_1212 - symbol:VC_1212 "DNA polymerase II" spe... 98 0.00035 3
UNIPROTKB|Q59J89 - symbol:Q59J89 "DNA polymerase" species... 140 0.00041 4
>UNIPROTKB|F1LMP6 [details] [associations]
symbol:Rev3l "DNA polymerase" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:1307087
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 IPI:IPI00361212
Ensembl:ENSRNOT00000000725 ArrayExpress:F1LMP6 Uniprot:F1LMP6
Length = 3118
Score = 907 (324.3 bits), Expect = 1.0e-134, Sum P(7) = 1.0e-134
Identities = 183/347 (52%), Positives = 243/347 (70%)
Query: 1118 DEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWF 1177
D++G S +++ GRI LN+WR+MR EV L YT E V+ VL ++ P FRVL+ WF
Sbjct: 2434 DDYGSDTMSEINIVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQRFPLFTFRVLSDWF 2493
Query: 1178 ASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVES 1237
+ R++ V++ V R + NL+++ QLD+I +TSE+AR+FGI F VL+RGSQYRVES
Sbjct: 2494 DNKTDLYRWKMVDHYVSRVRGNLQMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVES 2553
Query: 1238 MLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIA 1297
M+LR+A NY+ ++P Q + A +C+PL+MEPES FY++ V+VLDFQSLYPS++IA
Sbjct: 2554 MMLRIAKPMNYIPVTPSVQQRSQMRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIA 2613
Query: 1298 YNLCFCTCLGKI--LPS-KENTLGVSSFR--PDLHVLRDLKDELLIPPNGVMYVPPKVRK 1352
YN CF TCLG I L E G +S R PDL L ++ ++ + PNGV +V P VRK
Sbjct: 2614 YNYCFSTCLGHIENLGKYDEFKFGCTSLRVPPDL--LYQIRHDITVSPNGVAFVKPSVRK 2671
Query: 1353 GVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGR 1412
GVLPR+LEEIL TR MVKQ++K + L R+ NARQL LKLIANVT+GYT+A FSGR
Sbjct: 2672 GVLPRMLEEILKTRFMVKQSMKAYR-QDRALSRMLNARQLGLKLIANVTFGYTSANFSGR 2730
Query: 1413 MPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI 1459
MPC E+ DSIV R TLE+AI VN+ +KW A+V+YGDTD V +
Sbjct: 2731 MPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLL 2777
Score = 276 (102.2 bits), Expect = 1.0e-134, Sum P(7) = 1.0e-134
Identities = 56/111 (50%), Positives = 76/111 (68%)
Query: 10 IFSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPY 69
+FSVRIV+ D+YMA P+PG DIC S L V +VPV+RV+G+TPAGQKTCLH+H PY
Sbjct: 1 MFSVRIVTADYYMASPLPGLDICQSPLTQHPVKKVPVVRVFGATPAGQKTCLHLHGVFPY 60
Query: 70 LYVPCADIPVQLRQEDDGYMHAISLALEKALKVK-GSAGSKRQHVHECSLV 119
LYVP Q+ + Y+ ++L++++AL V G+ S QHV + SLV
Sbjct: 61 LYVPYDGYG----QQPERYLSQMALSIDRALNVALGNPSSTAQHVFKVSLV 107
Score = 183 (69.5 bits), Expect = 1.0e-134, Sum P(7) = 1.0e-134
Identities = 67/221 (30%), Positives = 108/221 (48%)
Query: 923 QDISQISGPD-GRSKPTPLSQIGFQDPASAGAGEQLTLLSIEVQAESRGDLRPDPRYDSI 981
++ SQI GP + +S Q+ + + LTL+S+E+ A +R DL+PDP +D I
Sbjct: 2250 KETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLQPDPEFDPI 2309
Query: 982 NVVALAFENDSD----HAVE---IYVLLYCKSESHQ--RS----LV--GIPDCKVFVCSK 1026
+ +D+ E + V+ K+ +HQ R L+ G+ +V +
Sbjct: 2310 CALFYCISSDTPLPDTEKTELTGVIVIDKDKTVTHQDIRCQTPLLIRSGVTGLEVTYAAD 2369
Query: 1027 EIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTP---LESKI 1083
E LF I+ +DPDIL+G++IQ S G+L +RAA L + L ISR P +E++
Sbjct: 2370 EKALFQEVTNIMKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLCQMISRVPDDKIENRF 2429
Query: 1084 AAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTH 1124
AA E + G +D M +V L I+ +E T+
Sbjct: 2430 AA---ERDDYG-SDTMSEINIVGRITLNLWRIMRNEVALTN 2466
Score = 145 (56.1 bits), Expect = 1.0e-134, Sum P(7) = 1.0e-134
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 116 CSLVRAKKGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFR 165
C L+++ GA+ +K QPHE+HIP+LLQ +DYNLYGM ++L+ +KFR
Sbjct: 137 CELLQS---GAIMNKFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFR 183
Score = 52 (23.4 bits), Expect = 1.0e-134, Sum P(7) = 1.0e-134
Identities = 25/91 (27%), Positives = 43/91 (47%)
Query: 483 NSDDELLHETILSPLLPETTID-KVLEKANTDYERESQKECQDILDSIEDEVNVDGLEER 541
NSDDE E +P + + ++ VL D + E Q C S+ + EE
Sbjct: 448 NSDDE---EN--APQMEKEEMELSVLMSQRWDSDTEEQ--CAK-KRSLCRNAHRSSTEED 499
Query: 542 NSSTVDPSNHPETS---SHKKIPQIDGSSDD 569
+SS+ + + S ++ IPQ+DG++D+
Sbjct: 500 DSSSEEEMEWTDNSLLFANLSIPQLDGTADE 530
Score = 46 (21.3 bits), Expect = 1.0e-134, Sum P(7) = 1.0e-134
Identities = 32/140 (22%), Positives = 56/140 (40%)
Query: 704 SECEPPRVKRVNVTGEQKNALSMCEKQLEFDTLQNDECEKCPLKGGTGISTVCKENMESP 763
S+C+ V +V GE ++ L++ ++ L+ + + + ++ K+ S
Sbjct: 1504 SQCKNQNVSTPSVFGEGQSGLAVLKELLQ---KRQQKAQTTNVQDSASSHQPDKDISVSA 1560
Query: 764 SPFDTKKEDASVSVGDWKADNCKESKFDATSVEPRELQSDHPNNNDSNLNQGSLTG-VPT 822
T K +V+ K + +K PR L+ D N S SL+ P
Sbjct: 1561 EHKKTNKRTRAVA-SPRKPRAPRRTK--PKEQTPRRLKVDPLNLQTSGHLDNSLSDDSPI 1617
Query: 823 LYLNDG--SCLYMLRPPFSP 840
L+ + G SC Y L SP
Sbjct: 1618 LFSDPGFESC-YSLEDSLSP 1636
Score = 45 (20.9 bits), Expect = 1.4e-133, Sum P(7) = 1.4e-133
Identities = 10/54 (18%), Positives = 26/54 (48%)
Query: 503 IDKVLEKANTDYERESQKECQDILDSIEDEVNVDGLEERNSSTVDPSNHPETSS 556
I++ L+ ANT + +++D+ +++ + + T P + P ++S
Sbjct: 1802 IEQSLDSANTSFTTVLSSPDGELVDAASEDLELYVSRNNDVLTPTPDSSPRSTS 1855
Score = 44 (20.5 bits), Expect = 1.0e-134, Sum P(7) = 1.0e-134
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 832 YMLRPPFSPPSVDSVHKWLL-HD 853
++L+P SPPS + + LL HD
Sbjct: 1871 HILKPLMSPPSREEIVATLLDHD 1893
Score = 44 (20.5 bits), Expect = 8.1e-26, Sum P(4) = 8.1e-26
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 263 LSQTRSDVKMVQSLVPIWEVCSHPIYKLFNIQYIYPLVNFTTFQEE 308
+S+ R +++M++ L I + + +LF IQ+++ L + ++ E
Sbjct: 2509 VSRVRGNLQMLEQLDLIGKTSE--MARLFGIQFLHVLTRGSQYRVE 2552
Score = 43 (20.2 bits), Expect = 2.1e-134, Sum P(7) = 2.1e-134
Identities = 29/151 (19%), Positives = 56/151 (37%)
Query: 679 IKEATAVTGGSVRDLMRRKRSYRESSECE-P-PRVKRVNVTGEQK--NALSM---CEKQL 731
+ E T+ +G + L ++K + + P P + + +Q+ N S K +
Sbjct: 1248 VPELTSSSG--IHTLSKQKEMTQTGPAMDHPLPPCQPTGINAQQRLSNCFSSFLESRKSV 1305
Query: 732 EFDTL---QNDECEKCPLKGGTGISTVCKENMESPSPFDTKKEDASVSVGDWKADNCKES 788
+F T + D G G+S V + S S T+KE + + N
Sbjct: 1306 QFPTFPSSRGDSRSSVYSSIGPGVSKVNTQRSHSQSAMFTRKETTLIQKSIFDLSNHLSQ 1365
Query: 789 KFDATSVEPRELQSDHPNNNDSNLNQGSLTG 819
+T + + ++++ N GS G
Sbjct: 1366 VAQSTQLCSGIISPKTEESSNTQKNCGSSIG 1396
Score = 43 (20.2 bits), Expect = 8.6e-134, Sum P(7) = 8.6e-134
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 512 TDYERESQKECQDILDSIEDEVNVDGLEERNSSTVDPSNHPETSSHKKI 560
T+ E+ QK Q+IL + V + G + +S + + S E + H +I
Sbjct: 295 TESEKIFQKRLQEILKQNDFSVTLSGSVDYSSGSQEFS--AELTLHSEI 341
Score = 43 (20.2 bits), Expect = 4.7e-26, Sum P(6) = 4.7e-26
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 1010 QRSLVGIPDCKVFVCSKEIHLFSHFIKILC--SFDPDILMGWD 1050
QRS + P C + E +S+ + +L S P I++ ++
Sbjct: 2573 QRSQMRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYN 2615
Score = 42 (19.8 bits), Expect = 1.2e-133, Sum P(8) = 1.2e-133
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 336 SLGLEFENVLMEMCGEGQETVSSFGNDFEVLKSVACATDEENLIKL 381
+L F + L E C + +SS G + V S+ TDE KL
Sbjct: 730 ALNSVFPSSLAESC----DLLSSSGENRSVAHSLDSITDESGRSKL 771
Score = 42 (19.8 bits), Expect = 5.1e-124, Sum P(7) = 5.1e-124
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 115 ECSLVRAKKGGAVFDKSLQP--HESHIPFLLQFLVDYN 150
+C LV A + +F K LQ ++ L VDY+
Sbjct: 288 DCRLVPATESEKIFQKRLQEILKQNDFSVTLSGSVDYS 325
Score = 40 (19.1 bits), Expect = 1.2e-133, Sum P(8) = 1.2e-133
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 542 NSSTVDPSNHPETSSHKKIPQIDGSS 567
+ +T PS T S + +P++ SS
Sbjct: 1230 DETTKPPSEAELTPSQRSVPELTSSS 1255
Score = 40 (19.1 bits), Expect = 7.6e-133, Sum P(6) = 7.6e-133
Identities = 17/83 (20%), Positives = 35/83 (42%)
Query: 458 IPQATDTEALGLLKWLATSQAAEDLNSDDELLHETILSPLLPETTIDKVLEKANTDYERE 517
+P+AT L + T + SD + L +L+ T ++ NT +
Sbjct: 2200 LPEATGLSPLSVEP--KTQKLYNKKGSDTDHLRRVLLT-----TQVENQFAAVNTPKKET 2252
Query: 518 SQKECQDILDSIEDEVNVDGLEE 540
SQ + + ++ +V++ L+E
Sbjct: 2253 SQIDGPSLNNTYGFKVSIQNLQE 2275
Score = 39 (18.8 bits), Expect = 5.4e-134, Sum P(7) = 5.4e-134
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 665 SFDALEREDADAHDIKEATAVTGGSVRDLMRRKRSYRESSECEPPRVKRVNVTGEQKNAL 724
S + L E++ AH AT+ SVR + K +++ EPP ++ + +AL
Sbjct: 532 SDNPLNNENSRAHSSVIATSKL--SVRPSVFHK----DAATLEPPSSAKITFQCKHTSAL 585
Query: 725 S 725
S
Sbjct: 586 S 586
Score = 39 (18.8 bits), Expect = 5.9e-133, Sum P(7) = 5.9e-133
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 531 DEVNVDGLEERNSSTVDPSNHPETSSHKKI 560
++V +D E S S HP TS I
Sbjct: 1724 EKVGIDNNENHRHSQWKTSFHPLTSHSNSI 1753
Score = 38 (18.4 bits), Expect = 1.2e-132, Sum P(6) = 1.2e-132
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 486 DELLHETILSPLLPETTIDKVLEK--ANTDYERESQKECQDILDSIEDEVNVDGLEERNS 543
++L T LSPL E K+ K ++TD+ R Q +E++ ++ +
Sbjct: 2198 EKLPEATGLSPLSVEPKTQKLYNKKGSDTDHLRRVLLTTQ-----VENQFAAVNTPKKET 2252
Query: 544 STVD-PS 549
S +D PS
Sbjct: 2253 SQIDGPS 2259
Score = 37 (18.1 bits), Expect = 1.9e-25, Sum P(6) = 1.9e-25
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 915 PNACADCLQDISQISGPDGRSKP 937
P AC L+ ++ D RS+P
Sbjct: 2909 PGACVPALELTRKMLAYDRRSEP 2931
>UNIPROTKB|F1M8G6 [details] [associations]
symbol:Rev3l "DNA polymerase" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:1307087
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 CTD:5980
KO:K02350 GO:GO:0016035 GeneTree:ENSGT00550000074640
IPI:IPI00778278 RefSeq:NP_001077435.1 UniGene:Rn.8189
Ensembl:ENSRNOT00000057227 GeneID:309812 KEGG:rno:309812
NextBio:661358 ArrayExpress:F1M8G6 Uniprot:F1M8G6
Length = 3132
Score = 907 (324.3 bits), Expect = 1.1e-134, Sum P(7) = 1.1e-134
Identities = 183/347 (52%), Positives = 243/347 (70%)
Query: 1118 DEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWF 1177
D++G S +++ GRI LN+WR+MR EV L YT E V+ VL ++ P FRVL+ WF
Sbjct: 2448 DDYGSDTMSEINIVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQRFPLFTFRVLSDWF 2507
Query: 1178 ASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVES 1237
+ R++ V++ V R + NL+++ QLD+I +TSE+AR+FGI F VL+RGSQYRVES
Sbjct: 2508 DNKTDLYRWKMVDHYVSRVRGNLQMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVES 2567
Query: 1238 MLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIA 1297
M+LR+A NY+ ++P Q + A +C+PL+MEPES FY++ V+VLDFQSLYPS++IA
Sbjct: 2568 MMLRIAKPMNYIPVTPSVQQRSQMRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIA 2627
Query: 1298 YNLCFCTCLGKI--LPS-KENTLGVSSFR--PDLHVLRDLKDELLIPPNGVMYVPPKVRK 1352
YN CF TCLG I L E G +S R PDL L ++ ++ + PNGV +V P VRK
Sbjct: 2628 YNYCFSTCLGHIENLGKYDEFKFGCTSLRVPPDL--LYQIRHDITVSPNGVAFVKPSVRK 2685
Query: 1353 GVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGR 1412
GVLPR+LEEIL TR MVKQ++K + L R+ NARQL LKLIANVT+GYT+A FSGR
Sbjct: 2686 GVLPRMLEEILKTRFMVKQSMKAYR-QDRALSRMLNARQLGLKLIANVTFGYTSANFSGR 2744
Query: 1413 MPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI 1459
MPC E+ DSIV R TLE+AI VN+ +KW A+V+YGDTD V +
Sbjct: 2745 MPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLL 2791
Score = 276 (102.2 bits), Expect = 1.1e-134, Sum P(7) = 1.1e-134
Identities = 56/111 (50%), Positives = 76/111 (68%)
Query: 10 IFSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPY 69
+FSVRIV+ D+YMA P+PG DIC S L V +VPV+RV+G+TPAGQKTCLH+H PY
Sbjct: 1 MFSVRIVTADYYMASPLPGLDICQSPLTQHPVKKVPVVRVFGATPAGQKTCLHLHGVFPY 60
Query: 70 LYVPCADIPVQLRQEDDGYMHAISLALEKALKVK-GSAGSKRQHVHECSLV 119
LYVP Q+ + Y+ ++L++++AL V G+ S QHV + SLV
Sbjct: 61 LYVPYDGYG----QQPERYLSQMALSIDRALNVALGNPSSTAQHVFKVSLV 107
Score = 183 (69.5 bits), Expect = 1.1e-134, Sum P(7) = 1.1e-134
Identities = 67/221 (30%), Positives = 108/221 (48%)
Query: 923 QDISQISGPD-GRSKPTPLSQIGFQDPASAGAGEQLTLLSIEVQAESRGDLRPDPRYDSI 981
++ SQI GP + +S Q+ + + LTL+S+E+ A +R DL+PDP +D I
Sbjct: 2264 KETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLQPDPEFDPI 2323
Query: 982 NVVALAFENDSD----HAVE---IYVLLYCKSESHQ--RS----LV--GIPDCKVFVCSK 1026
+ +D+ E + V+ K+ +HQ R L+ G+ +V +
Sbjct: 2324 CALFYCISSDTPLPDTEKTELTGVIVIDKDKTVTHQDIRCQTPLLIRSGVTGLEVTYAAD 2383
Query: 1027 EIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTP---LESKI 1083
E LF I+ +DPDIL+G++IQ S G+L +RAA L + L ISR P +E++
Sbjct: 2384 EKALFQEVTNIMKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLCQMISRVPDDKIENRF 2443
Query: 1084 AAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTH 1124
AA E + G +D M +V L I+ +E T+
Sbjct: 2444 AA---ERDDYG-SDTMSEINIVGRITLNLWRIMRNEVALTN 2480
Score = 145 (56.1 bits), Expect = 1.1e-134, Sum P(7) = 1.1e-134
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 116 CSLVRAKKGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFR 165
C L+++ GA+ +K QPHE+HIP+LLQ +DYNLYGM ++L+ +KFR
Sbjct: 137 CELLQS---GAIMNKFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFR 183
Score = 52 (23.4 bits), Expect = 1.1e-134, Sum P(7) = 1.1e-134
Identities = 25/91 (27%), Positives = 43/91 (47%)
Query: 483 NSDDELLHETILSPLLPETTID-KVLEKANTDYERESQKECQDILDSIEDEVNVDGLEER 541
NSDDE E +P + + ++ VL D + E Q C S+ + EE
Sbjct: 448 NSDDE---EN--APQMEKEEMELSVLMSQRWDSDTEEQ--CAK-KRSLCRNAHRSSTEED 499
Query: 542 NSSTVDPSNHPETS---SHKKIPQIDGSSDD 569
+SS+ + + S ++ IPQ+DG++D+
Sbjct: 500 DSSSEEEMEWTDNSLLFANLSIPQLDGTADE 530
Score = 46 (21.3 bits), Expect = 1.1e-134, Sum P(7) = 1.1e-134
Identities = 32/140 (22%), Positives = 56/140 (40%)
Query: 704 SECEPPRVKRVNVTGEQKNALSMCEKQLEFDTLQNDECEKCPLKGGTGISTVCKENMESP 763
S+C+ V +V GE ++ L++ ++ L+ + + + ++ K+ S
Sbjct: 1504 SQCKNQNVSTPSVFGEGQSGLAVLKELLQ---KRQQKAQTTNVQDSASSHQPDKDISVSA 1560
Query: 764 SPFDTKKEDASVSVGDWKADNCKESKFDATSVEPRELQSDHPNNNDSNLNQGSLTG-VPT 822
T K +V+ K + +K PR L+ D N S SL+ P
Sbjct: 1561 EHKKTNKRTRAVA-SPRKPRAPRRTK--PKEQTPRRLKVDPLNLQTSGHLDNSLSDDSPI 1617
Query: 823 LYLNDG--SCLYMLRPPFSP 840
L+ + G SC Y L SP
Sbjct: 1618 LFSDPGFESC-YSLEDSLSP 1636
Score = 45 (20.9 bits), Expect = 1.5e-133, Sum P(7) = 1.5e-133
Identities = 10/54 (18%), Positives = 26/54 (48%)
Query: 503 IDKVLEKANTDYERESQKECQDILDSIEDEVNVDGLEERNSSTVDPSNHPETSS 556
I++ L+ ANT + +++D+ +++ + + T P + P ++S
Sbjct: 1802 IEQSLDSANTSFTTVLSSPDGELVDAASEDLELYVSRNNDVLTPTPDSSPRSTS 1855
Score = 44 (20.5 bits), Expect = 1.1e-134, Sum P(7) = 1.1e-134
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 832 YMLRPPFSPPSVDSVHKWLL-HD 853
++L+P SPPS + + LL HD
Sbjct: 1871 HILKPLMSPPSREEIVATLLDHD 1893
Score = 44 (20.5 bits), Expect = 8.2e-26, Sum P(4) = 8.2e-26
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 263 LSQTRSDVKMVQSLVPIWEVCSHPIYKLFNIQYIYPLVNFTTFQEE 308
+S+ R +++M++ L I + + +LF IQ+++ L + ++ E
Sbjct: 2523 VSRVRGNLQMLEQLDLIGKTSE--MARLFGIQFLHVLTRGSQYRVE 2566
Score = 43 (20.2 bits), Expect = 2.2e-134, Sum P(7) = 2.2e-134
Identities = 29/151 (19%), Positives = 56/151 (37%)
Query: 679 IKEATAVTGGSVRDLMRRKRSYRESSECE-P-PRVKRVNVTGEQK--NALSM---CEKQL 731
+ E T+ +G + L ++K + + P P + + +Q+ N S K +
Sbjct: 1248 VPELTSSSG--IHTLSKQKEMTQTGPAMDHPLPPCQPTGINAQQRLSNCFSSFLESRKSV 1305
Query: 732 EFDTL---QNDECEKCPLKGGTGISTVCKENMESPSPFDTKKEDASVSVGDWKADNCKES 788
+F T + D G G+S V + S S T+KE + + N
Sbjct: 1306 QFPTFPSSRGDSRSSVYSSIGPGVSKVNTQRSHSQSAMFTRKETTLIQKSIFDLSNHLSQ 1365
Query: 789 KFDATSVEPRELQSDHPNNNDSNLNQGSLTG 819
+T + + ++++ N GS G
Sbjct: 1366 VAQSTQLCSGIISPKTEESSNTQKNCGSSIG 1396
Score = 43 (20.2 bits), Expect = 9.1e-134, Sum P(7) = 9.1e-134
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 512 TDYERESQKECQDILDSIEDEVNVDGLEERNSSTVDPSNHPETSSHKKI 560
T+ E+ QK Q+IL + V + G + +S + + S E + H +I
Sbjct: 295 TESEKIFQKRLQEILKQNDFSVTLSGSVDYSSGSQEFS--AELTLHSEI 341
Score = 43 (20.2 bits), Expect = 4.8e-26, Sum P(6) = 4.8e-26
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 1010 QRSLVGIPDCKVFVCSKEIHLFSHFIKILC--SFDPDILMGWD 1050
QRS + P C + E +S+ + +L S P I++ ++
Sbjct: 2587 QRSQMRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYN 2629
Score = 42 (19.8 bits), Expect = 1.2e-133, Sum P(8) = 1.2e-133
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 336 SLGLEFENVLMEMCGEGQETVSSFGNDFEVLKSVACATDEENLIKL 381
+L F + L E C + +SS G + V S+ TDE KL
Sbjct: 730 ALNSVFPSSLAESC----DLLSSSGENRSVAHSLDSITDESGRSKL 771
Score = 42 (19.8 bits), Expect = 5.4e-124, Sum P(7) = 5.4e-124
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 115 ECSLVRAKKGGAVFDKSLQP--HESHIPFLLQFLVDYN 150
+C LV A + +F K LQ ++ L VDY+
Sbjct: 288 DCRLVPATESEKIFQKRLQEILKQNDFSVTLSGSVDYS 325
Score = 40 (19.1 bits), Expect = 1.2e-133, Sum P(8) = 1.2e-133
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 542 NSSTVDPSNHPETSSHKKIPQIDGSS 567
+ +T PS T S + +P++ SS
Sbjct: 1230 DETTKPPSEAELTPSQRSVPELTSSS 1255
Score = 40 (19.1 bits), Expect = 7.9e-133, Sum P(6) = 7.9e-133
Identities = 17/83 (20%), Positives = 35/83 (42%)
Query: 458 IPQATDTEALGLLKWLATSQAAEDLNSDDELLHETILSPLLPETTIDKVLEKANTDYERE 517
+P+AT L + T + SD + L +L+ T ++ NT +
Sbjct: 2214 LPEATGLSPLSVEP--KTQKLYNKKGSDTDHLRRVLLT-----TQVENQFAAVNTPKKET 2266
Query: 518 SQKECQDILDSIEDEVNVDGLEE 540
SQ + + ++ +V++ L+E
Sbjct: 2267 SQIDGPSLNNTYGFKVSIQNLQE 2289
Score = 39 (18.8 bits), Expect = 5.6e-134, Sum P(7) = 5.6e-134
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 665 SFDALEREDADAHDIKEATAVTGGSVRDLMRRKRSYRESSECEPPRVKRVNVTGEQKNAL 724
S + L E++ AH AT+ SVR + K +++ EPP ++ + +AL
Sbjct: 532 SDNPLNNENSRAHSSVIATSKL--SVRPSVFHK----DAATLEPPSSAKITFQCKHTSAL 585
Query: 725 S 725
S
Sbjct: 586 S 586
Score = 39 (18.8 bits), Expect = 6.2e-133, Sum P(7) = 6.2e-133
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 531 DEVNVDGLEERNSSTVDPSNHPETSSHKKI 560
++V +D E S S HP TS I
Sbjct: 1724 EKVGIDNNENHRHSQWKTSFHPLTSHSNSI 1753
Score = 38 (18.4 bits), Expect = 1.3e-132, Sum P(6) = 1.3e-132
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 486 DELLHETILSPLLPETTIDKVLEK--ANTDYERESQKECQDILDSIEDEVNVDGLEERNS 543
++L T LSPL E K+ K ++TD+ R Q +E++ ++ +
Sbjct: 2212 EKLPEATGLSPLSVEPKTQKLYNKKGSDTDHLRRVLLTTQ-----VENQFAAVNTPKKET 2266
Query: 544 STVD-PS 549
S +D PS
Sbjct: 2267 SQIDGPS 2273
Score = 37 (18.1 bits), Expect = 1.9e-25, Sum P(6) = 1.9e-25
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 915 PNACADCLQDISQISGPDGRSKP 937
P AC L+ ++ D RS+P
Sbjct: 2923 PGACVPALELTRKMLAYDRRSEP 2945
>MGI|MGI:1337131 [details] [associations]
symbol:Rev3l "REV3-like, catalytic subunit of DNA polymerase
zeta RAD54 like (S. cerevisiae)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016035 "zeta DNA polymerase
complex" evidence=ISO;IBA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 EMBL:AF083464 MGI:MGI:1337131
GO:GO:0005634 GO:GO:0005694 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0051539 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 CTD:5980
HOGENOM:HOG000112263 HOVERGEN:HBG000426 KO:K02350 OMA:DGTADEN
ChiTaRS:REV3L GO:GO:0016035 EMBL:AB031049 EMBL:AC118733
EMBL:AC119943 EMBL:D78644 IPI:IPI00378205 PIR:T17202
RefSeq:NP_035394.2 UniGene:Mm.439723 PDB:4FJO PDBsum:4FJO
ProteinModelPortal:Q61493 SMR:Q61493 STRING:Q61493
PhosphoSite:Q61493 PaxDb:Q61493 PRIDE:Q61493
Ensembl:ENSMUST00000019986 Ensembl:ENSMUST00000164763 GeneID:19714
KEGG:mmu:19714 UCSC:uc007ewc.1 GeneTree:ENSGT00550000074640
InParanoid:Q61493 NextBio:297104 Bgee:Q61493 Genevestigator:Q61493
GermOnline:ENSMUSG00000019841 Uniprot:Q61493
Length = 3122
Score = 911 (325.7 bits), Expect = 7.6e-134, Sum P(8) = 7.6e-134
Identities = 183/347 (52%), Positives = 244/347 (70%)
Query: 1118 DEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWF 1177
D++G S +++ GRI LN+WR+MR EV L YT E V+ VL ++ P FRVL+ WF
Sbjct: 2438 DDYGSDTMSEINIVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQRFPLFTFRVLSDWF 2497
Query: 1178 ASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVES 1237
+ R++ V++ V R + NL+++ QLD+I +TSE+AR+FGI F VL+RGSQYRVES
Sbjct: 2498 DNKTDLYRWKMVDHYVSRVRGNLQMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVES 2557
Query: 1238 MLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIA 1297
M+LR+A NY+ ++P Q + A +C+PL+MEPES FY++ V+VLDFQSLYPS++IA
Sbjct: 2558 MMLRIAKPMNYIPVTPSIQQRSQMRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIA 2617
Query: 1298 YNLCFCTCLGKI--LPS-KENTLGVSSFR--PDLHVLRDLKDELLIPPNGVMYVPPKVRK 1352
YN CF TCLG + L E G +S R PDL L ++ ++ + PNGV +V P VRK
Sbjct: 2618 YNYCFSTCLGHVENLGKYDEFKFGCTSLRVPPDL--LYQIRHDVTVSPNGVAFVKPSVRK 2675
Query: 1353 GVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGR 1412
GVLPR+LEEIL TR+MVKQ++K + L R+ NARQL LKLIANVT+GYTAA FSGR
Sbjct: 2676 GVLPRMLEEILKTRLMVKQSMKSYK-QDRALSRMLNARQLGLKLIANVTFGYTAANFSGR 2734
Query: 1413 MPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI 1459
MPC E+ DSIV R TLE+AI VN+ +KW A+V+YGDTD V +
Sbjct: 2735 MPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLL 2781
Score = 266 (98.7 bits), Expect = 7.6e-134, Sum P(8) = 7.6e-134
Identities = 54/111 (48%), Positives = 74/111 (66%)
Query: 10 IFSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPY 69
+FSVRIV+ D+YMA P+PG D C S L V +VPV+RV+G+TPAGQKTCLH+H PY
Sbjct: 1 MFSVRIVTADYYMASPLPGLDTCQSPLTQLPVKKVPVVRVFGATPAGQKTCLHLHGIFPY 60
Query: 70 LYVPCADIPVQLRQEDDGYMHAISLALEKALKVK-GSAGSKRQHVHECSLV 119
LYVP Q+ + Y+ ++ ++++AL V G+ S QHV + SLV
Sbjct: 61 LYVPYDGYG----QQPESYLSQMAFSIDRALNVALGNPSSTAQHVFKVSLV 107
Score = 190 (71.9 bits), Expect = 7.6e-134, Sum P(8) = 7.6e-134
Identities = 69/221 (31%), Positives = 109/221 (49%)
Query: 923 QDISQISGPD-GRSKPTPLSQIGFQDPASAGAGEQLTLLSIEVQAESRGDLRPDPRYDSI 981
++ SQI GP + +S Q+ + + LTL+S+E+ A +R DL+PDP +D I
Sbjct: 2254 KETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLQPDPEFDPI 2313
Query: 982 NVVALAFENDSD----HAVE---IYVLLYCKSESHQ--RS----LV--GIPDCKVFVCSK 1026
+ +D+ E + V+ K+ +HQ RS L+ GI +V +
Sbjct: 2314 CALFYCISSDTPLPDTEKTELTGVIVIDKDKTVTHQDIRSQTPLLIRSGITGLEVTYAAD 2373
Query: 1027 EIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTP---LESKI 1083
E LF I+ +DPDIL+G++IQ S G+L +RAA L + L ISR P +E++
Sbjct: 2374 EKALFQEITNIIKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLCQMISRVPDDKIENRF 2433
Query: 1084 AAGDSEISERGITDNMLAEPVVAESLLAKDAIIEDEWGRTH 1124
AA E + G +D M +V L I+ +E T+
Sbjct: 2434 AA---ERDDYG-SDTMSEINIVGRITLNLWRIMRNEVALTN 2470
Score = 146 (56.5 bits), Expect = 7.6e-134, Sum P(8) = 7.6e-134
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 116 CSLVRAKKGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFR 165
C L+++ GA+ +K QPHE+HIP+LLQ +DYNLYGM ++L+ +KFR
Sbjct: 137 CELLQS---GAIMNKCYQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFR 183
Score = 47 (21.6 bits), Expect = 7.6e-134, Sum P(8) = 7.6e-134
Identities = 21/90 (23%), Positives = 42/90 (46%)
Query: 483 NSDDELLHETILSPLLPETTIDKVLEKANTDYERESQKECQDILDSIEDEVNVDGLEERN 542
NSDDE I + + + + ++ ++D E K+ S+ + EE +
Sbjct: 448 NSDDEENEPQIEKEEMELSVV--MSQRWDSDIEEHCAKK-----RSLCRNAHRSSTEEDD 500
Query: 543 SSTVDPSNHPETS---SHKKIPQIDGSSDD 569
SS+ + + S ++ IPQ+DG++D+
Sbjct: 501 SSSEEEMEWTDNSLLFANLSIPQLDGTADE 530
Score = 44 (20.5 bits), Expect = 7.6e-134, Sum P(8) = 7.6e-134
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 832 YMLRPPFSPPSVDSVHKWLL-HD 853
++L+P SPPS + + LL HD
Sbjct: 1873 HILKPLMSPPSREEIVATLLDHD 1895
Score = 44 (20.5 bits), Expect = 7.2e-25, Sum P(4) = 7.2e-25
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 263 LSQTRSDVKMVQSLVPIWEVCSHPIYKLFNIQYIYPLVNFTTFQEE 308
+S+ R +++M++ L I + + +LF IQ+++ L + ++ E
Sbjct: 2513 VSRVRGNLQMLEQLDLIGKTSE--MARLFGIQFLHVLTRGSQYRVE 2556
Score = 43 (20.2 bits), Expect = 7.2e-25, Sum P(4) = 7.2e-25
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 1010 QRSLVGIPDCKVFVCSKEIHLFSHFIKILC--SFDPDILMGWD 1050
QRS + P C + E +S+ + +L S P I++ ++
Sbjct: 2577 QRSQMRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYN 2619
Score = 42 (19.8 bits), Expect = 7.6e-134, Sum P(8) = 7.6e-134
Identities = 27/99 (27%), Positives = 41/99 (41%)
Query: 665 SFDALEREDADAHDIKEATAVTGGSVRDLMRRKRSYRESSECEPPRVKRVNVTGEQKNAL 724
S + L E++ AH AT+ SVR + K +++ EPP ++ + +AL
Sbjct: 532 SDNPLNNENSRAHSSVIATSKL--SVRPSIFHK----DAATLEPPSSAKITFQCKHTSAL 585
Query: 725 SMCEKQLEFDTLQNDECE-KCPLKGGTGISTVCKENMES 762
S L D L D + KG T KE+ S
Sbjct: 586 S--SHVLNKDGLTEDLSQPNSTEKGRDNSVTFTKESTYS 622
Score = 42 (19.8 bits), Expect = 2.4e-133, Sum P(7) = 2.4e-133
Identities = 10/53 (18%), Positives = 24/53 (45%)
Query: 504 DKVLEKANTDYERESQKECQDILDSIEDEVNVDGLEERNSSTVDPSNHPETSS 556
D+ L ANT + +++D+ +++ + + T P + P ++S
Sbjct: 1805 DQSLHSANTSFTTILSSPDGELVDAASEDLELYVSRNNDVLTPTPDSSPRSTS 1857
Score = 40 (19.1 bits), Expect = 2.4e-133, Sum P(7) = 2.4e-133
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 336 SLGLEFENVLMEMCGEGQETVSSFGNDFEVLKSVACATDEENLIKL 381
SL F + L E C + + S G + + S+ TDE L KL
Sbjct: 730 SLSGVFPSSLTENC----DLLPSSGENRSMAHSLESITDESGLNKL 771
Score = 39 (18.8 bits), Expect = 9.3e-134, Sum P(7) = 9.3e-134
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 704 SECEPPRVKRVNVTGEQKNALSMCEKQLE 732
S+C+ V +V GE ++ L++ ++ L+
Sbjct: 1505 SQCKNQNVSTPSVFGEGQSGLAVLKELLQ 1533
Score = 38 (18.4 bits), Expect = 7.6e-134, Sum P(8) = 7.6e-134
Identities = 15/71 (21%), Positives = 26/71 (36%)
Query: 749 GTGISTVCKENMESPSPFDTKKEDASVSVGDWKADNCKESKFDATSVEPRELQSDHPNNN 808
G GIS + + + S T+KE + + N +T V + ++
Sbjct: 1327 GPGISKINIQRSHNQSAMFTRKETTLIQKSIFDLSNHLSQVAQSTQVCSGIISPKTEESS 1386
Query: 809 DSNLNQGSLTG 819
+ N GS G
Sbjct: 1387 STQKNCGSSMG 1397
Score = 38 (18.4 bits), Expect = 1.1e-132, Sum P(6) = 1.1e-132
Identities = 17/83 (20%), Positives = 35/83 (42%)
Query: 458 IPQATDTEALGLLKWLATSQAAEDLNSDDELLHETILSPLLPETTIDKVLEKANTDYERE 517
+P+AT L + T + SD + L +L+ T ++ NT +
Sbjct: 2204 LPEATGLSPLSVEP--KTQKLYNKKGSDADGLRRVLLT-----TQVENQFAAVNTPKKET 2256
Query: 518 SQKECQDILDSIEDEVNVDGLEE 540
SQ + + ++ +V++ L+E
Sbjct: 2257 SQIDGPSLNNTYGFKVSIQNLQE 2279
Score = 37 (18.1 bits), Expect = 1.5e-133, Sum P(7) = 1.5e-133
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 681 EATAVTGGSVRDLMRRKRSYRESSECEPPRVKRVNVT---GEQKNALSMCEKQLEFDT 735
E ++ T + M + YR S E +P +V N Q+ +S+ E+ +T
Sbjct: 1383 EESSSTQKNCGSSMGKLNEYRSSLESKPEQVCAPNFLHCKDSQQQTVSVSEQSKTSET 1440
Score = 37 (18.1 bits), Expect = 1.3e-132, Sum P(7) = 1.3e-132
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 692 DLMRRKRSYRESSECEPPRVKRVNVTGEQKNALSMCEKQLEFDTLQND 739
D +R+R+ ESS+ P + ++ +K+L+ QND
Sbjct: 267 DEKQRRRNRNESSQISQPESQDCRFVPATESEKQF-QKRLQEVLKQND 313
Score = 37 (18.1 bits), Expect = 1.3e-132, Sum P(6) = 1.3e-132
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 486 DELLHETILSPLLPETTIDKVLEKANTD 513
++L T LSPL E K+ K +D
Sbjct: 2202 EKLPEATGLSPLSVEPKTQKLYNKKGSD 2229
Score = 37 (18.1 bits), Expect = 5.8e-23, Sum P(7) = 5.8e-23
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 915 PNACADCLQDISQISGPDGRSKP 937
P AC L+ ++ D RS+P
Sbjct: 2913 PGACVPALELTRKMLAYDRRSEP 2935
>UNIPROTKB|E1BPY8 [details] [associations]
symbol:REV3L "DNA polymerase" species:9913 "Bos taurus"
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:DAAA02025892 EMBL:DAAA02025893
EMBL:DAAA02025894 EMBL:DAAA02025895 IPI:IPI00923965
Ensembl:ENSBTAT00000060948 Uniprot:E1BPY8
Length = 3133
Score = 912 (326.1 bits), Expect = 3.8e-133, Sum P(7) = 3.8e-133
Identities = 181/347 (52%), Positives = 246/347 (70%)
Query: 1118 DEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWF 1177
DE+G S +++ GRI LN+WR+MR EV LN YT E V+ VL ++ P FRVL+ WF
Sbjct: 2449 DEYGSDVMSEINIVGRITLNLWRIMRNEVALNNYTFENVSFHVLHQRFPLFTFRVLSDWF 2508
Query: 1178 ASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVES 1237
+ R++ V++ + R + NL+++ QLD+I +TSE+AR+FGI F VL+RGSQYRVES
Sbjct: 2509 DNKTDLYRWKMVDHYISRVRGNLQMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVES 2568
Query: 1238 MLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIA 1297
M+LR+A NY+ ++P Q + A +C+PL+MEPES FY++ V+VLDFQSLYPS++IA
Sbjct: 2569 MMLRIAKPMNYIPVTPSVQQRSQMRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIA 2628
Query: 1298 YNLCFCTCLGKI--LPS-KENTLGVSSFR--PDLHVLRDLKDELLIPPNGVMYVPPKVRK 1352
YN CF TCLG + L E G +S R PDL L ++ ++ + PNG+ +V P VRK
Sbjct: 2629 YNYCFSTCLGHVENLGKYDEFKFGCTSLRVPPDL--LYQIRHDITVSPNGIAFVKPSVRK 2686
Query: 1353 GVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGR 1412
GVLPR+LEEIL TR+MVK+++K ++L R+ +ARQL LKLIANVT+GYTAA FSGR
Sbjct: 2687 GVLPRMLEEILKTRLMVKRSMKAYK-QDRVLSRMLDARQLGLKLIANVTFGYTAANFSGR 2745
Query: 1413 MPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI 1459
MPC E+ DSIV R TLE+AI VN+ +KW A+V+YGDTD V +
Sbjct: 2746 MPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSLFVLL 2792
Score = 263 (97.6 bits), Expect = 3.8e-133, Sum P(7) = 3.8e-133
Identities = 52/111 (46%), Positives = 74/111 (66%)
Query: 10 IFSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPY 69
+FSVRIV+ D+YMA P+ G DIC S L V +VPV+R++G+TPAGQKTCLH+H PY
Sbjct: 1 MFSVRIVTADYYMASPLQGLDICQSPLTQAPVKKVPVVRIFGATPAGQKTCLHLHGIFPY 60
Query: 70 LYVPCADIPVQLRQEDDGYMHAISLALEKALKVK-GSAGSKRQHVHECSLV 119
LYVP Q+ + Y+ ++ ++++AL V G+ S QHV + S+V
Sbjct: 61 LYVPYDGYG----QQPESYLSQMAFSIDRALNVALGNPSSTAQHVFKVSVV 107
Score = 176 (67.0 bits), Expect = 3.8e-133, Sum P(7) = 3.8e-133
Identities = 57/186 (30%), Positives = 91/186 (48%)
Query: 923 QDISQISGPD-GRSKPTPLSQIGFQDPASAGAGEQLTLLSIEVQAESRGDLRPDPRYDSI 981
++ SQI GP + +S ++ + + LTL+S+E+ A +R DL PDP +D I
Sbjct: 2265 KETSQIDGPSLNNTYGFKVSIQNLEEAKALHEIQNLTLISVELHARTRRDLEPDPEFDPI 2324
Query: 982 NVVALAFENDS-----DHAVEIYVLLYCKSES-------HQRSLV---GIPDCKVFVCSK 1026
+ +D+ D V++ K ++ +Q L+ GI +V +
Sbjct: 2325 CALFYCISSDTPLPDTDKTELTGVIVIDKDKTVSSQDIRYQTPLLIRSGITGLQVTYAAD 2384
Query: 1027 EIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTP---LESKI 1083
E LF I+ +DPDIL+G++IQ S G+L +RAA L + L ISR P E++
Sbjct: 2385 EKTLFQEIANIIKRYDPDILIGYEIQMHSWGYLLQRAAALSVDLCQMISRVPDDKTENRF 2444
Query: 1084 AAGDSE 1089
AA E
Sbjct: 2445 AAERDE 2450
Score = 145 (56.1 bits), Expect = 3.8e-133, Sum P(7) = 3.8e-133
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 116 CSLVRAKKGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFR 165
C L+++ GA+ +K QPHE+HIP+LLQ +DYNLYGM ++L+ +KFR
Sbjct: 137 CELLQS---GAIMNKFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFR 183
Score = 51 (23.0 bits), Expect = 4.3e-119, Sum P(4) = 4.3e-119
Identities = 23/68 (33%), Positives = 33/68 (48%)
Query: 1050 DIQGGSLGFLAERAAHLGIGLLNDISR-TPLESKIAAGDSEISERGITDNMLAEPVVAES 1108
D GS F AE H + L ++I TP DSE+S +G T P V E+
Sbjct: 324 DYSDGSQEFSAELTLHSEV-LSHEILPCTPANMVEVHKDSELS-KGHT-----RPKVEEA 376
Query: 1109 LLAKDAII 1116
L+ ++AI+
Sbjct: 377 LINEEAIL 384
Score = 49 (22.3 bits), Expect = 3.8e-133, Sum P(7) = 3.8e-133
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 512 TDYERESQKECQDILDSIEDEVNVDGLEERNSSTVDPSN----HPETSSHKKIP 561
T+ E++ QK Q+IL V + G + + + + S H E SH+ +P
Sbjct: 296 TESEKKFQKRLQEILKENNFSVTLSGSVDYSDGSQEFSAELTLHSEVLSHEILP 349
Score = 48 (22.0 bits), Expect = 1.7e-132, Sum P(6) = 1.7e-132
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 539 EERNSSTVDP---SNHPETSSHKKIPQIDGSSDD 569
EE +SS+ + SN+ ++ IPQ+DG++D+
Sbjct: 498 EEDDSSSEEEMEWSNNSLLLANLSIPQLDGTADE 531
Score = 47 (21.6 bits), Expect = 3.8e-133, Sum P(7) = 3.8e-133
Identities = 44/205 (21%), Positives = 80/205 (39%)
Query: 599 VPQDTW-TNAASKCNVKKKLWGSLPFSVSEQFNKDIET-VSCNISSLCVTEVKDHGATGS 656
V W +N C K+ L + S +E+ + E + + +SL + + G+
Sbjct: 469 VMSQRWDSNIEEHCAKKRSLCRNTHRSSTEEDDSSSEEEMEWSNNSLLLANLSIPQLDGT 528
Query: 657 LVGNELGKSFDALEREDADAHDIKEATAVTGGSVRDLMRRKRSYRESSECEPPRVKRVNV 716
N S + L E++ H AT+ SV+ + K +++ EPP ++
Sbjct: 529 ADEN----SDNPLNNENSRTHSSVIATSKL--SVKPSIFHK----DAATLEPPSSAKITF 578
Query: 717 TGEQKNALS---MCEKQLEFDTLQNDECEKCPLKGGTGISTVCKENMESPS-------PF 766
+ +ALS + ++ L D Q + EK T + +M+ P P
Sbjct: 579 QCKHTSALSSHVLNKEDLIEDLSQPSKLEKSLDHSVTSFTNESTYSMKYPGSLSSSVHPE 638
Query: 767 DTKKEDASVSVGDWKADNCKESKFD 791
++ KE V +C+ S FD
Sbjct: 639 NSHKESGKKDV--LPVSSCESSTFD 661
Score = 46 (21.3 bits), Expect = 1.2e-119, Sum P(7) = 1.2e-119
Identities = 21/90 (23%), Positives = 33/90 (36%)
Query: 914 EPNACADCLQDISQISGPDGRS-KPTPLSQIGFQDPASAGAGEQLTLLSIEVQAESRGDL 972
EP +D S PD R P + P +A E + I +QA +
Sbjct: 2030 EPTRVVKSAEDFSSSVNPDDRPVAPPKMDTTPHTLPTTAHTKEDVDNSQIALQAPTTECH 2089
Query: 973 RPDPRYDSINVVALA--FENDSDHAVEIYV 1000
+ ++ +VA A E D D + Y+
Sbjct: 2090 QTASESQTLPLVASAGDAEKDQDDDDDYYI 2119
Score = 45 (20.9 bits), Expect = 3.8e-133, Sum P(7) = 3.8e-133
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 832 YMLRPPFSPPSVDSVHKWLL-HD 853
++L+P SPPS + + LL HD
Sbjct: 1880 HILKPLMSPPSREEIMATLLDHD 1902
Score = 45 (20.9 bits), Expect = 1.3e-132, Sum P(6) = 1.3e-132
Identities = 20/91 (21%), Positives = 36/91 (39%)
Query: 754 TVCKENMESPSPFD--TKKEDASVSVGDWKADNCKESKFDATSVEPRELQSDHPNNNDSN 811
++C+ S + D + +E+ S N + D T+ E SD+P NN+++
Sbjct: 487 SLCRNTHRSSTEEDDSSSEEEMEWSNNSLLLANLSIPQLDGTADE----NSDNPLNNENS 542
Query: 812 LNQGSLTGVPTLYLNDGSCLYMLRPPFSPPS 842
S+ L + S + PPS
Sbjct: 543 RTHSSVIATSKLSVKP-SIFHKDAATLEPPS 572
Score = 45 (20.9 bits), Expect = 1.5e-24, Sum P(4) = 1.5e-24
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 263 LSQTRSDVKMVQSLVPIWEVCSHPIYKLFNIQYIYPLVNFTTFQEE 308
+S+ R +++M++ L I + + +LF IQ+++ L + ++ E
Sbjct: 2524 ISRVRGNLQMLEQLDLIGKTSE--MARLFGIQFLHVLTRGSQYRVE 2567
Score = 43 (20.2 bits), Expect = 7.4e-132, Sum P(5) = 7.4e-132
Identities = 22/67 (32%), Positives = 29/67 (43%)
Query: 449 KEPLIFGIDIPQATDTEALGLLKWLATSQAAEDLNSDDELLHETILSPLLPETTIDKVLE 508
+EPL+ + T TE L +T L + L T LSPL E I K+
Sbjct: 2181 QEPLVIS-PVNVRTRTEICESLCLHSTPIIQRKL---ERLPEATGLSPLSTEPKIQKLSH 2236
Query: 509 K--ANTD 513
K +NTD
Sbjct: 2237 KKGSNTD 2243
Score = 43 (20.2 bits), Expect = 1.1e-24, Sum P(7) = 1.1e-24
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 1010 QRSLVGIPDCKVFVCSKEIHLFSHFIKILC--SFDPDILMGWD 1050
QRS + P C + E +S+ + +L S P I++ ++
Sbjct: 2588 QRSQMRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYN 2630
>ZFIN|ZDB-GENE-050302-55 [details] [associations]
symbol:rev3l "REV3-like, catalytic subunit of DNA
polymerase zeta (yeast)" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 ZFIN:ZDB-GENE-050302-55 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00550000074640 EMBL:CABZ01061477 EMBL:CABZ01061476
EMBL:CU570797 IPI:IPI00996886 Ensembl:ENSDART00000092264
ArrayExpress:E7FDC5 Bgee:E7FDC5 Uniprot:E7FDC5
Length = 2953
Score = 892 (319.1 bits), Expect = 5.5e-132, Sum P(7) = 5.5e-132
Identities = 181/348 (52%), Positives = 245/348 (70%)
Query: 1117 EDEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKW 1176
+DE+G + +H+ GRI+LN+WR+M+ E LN YT E VA +L ++ P R L+ W
Sbjct: 2266 KDEYGAETMTEIHITGRIILNIWRIMKTEAALNNYTFENVAFHLLHQRYPLYSHRTLSDW 2325
Query: 1177 FASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVE 1236
F + R++ +++ V R ++++ Q D+I RTSELARVFGI F+ VL+RGSQYRVE
Sbjct: 2326 FDTH--LHRWKVMDHYVSRVCGTVQLLQQQDIIGRTSELARVFGIQFYHVLTRGSQYRVE 2383
Query: 1237 SMLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMI 1296
SM+LR+A NY+ ++P Q A Q A +C+PLVMEPES FY++ V+VLDFQSLYPS++I
Sbjct: 2384 SMMLRVAKPMNYIPVTPSTQQRAQQRAAQCIPLVMEPESRFYSNSVIVLDFQSLYPSIVI 2443
Query: 1297 AYNLCFCTCLGKI--LPS-KENTLGVSSFR--PDLHVLRDLKDELLIPPNGVMYVPPKVR 1351
AYN C+ TCLG I L + E G +S R PDL L L++++ + PNGV +V VR
Sbjct: 2444 AYNYCYSTCLGHIENLGTYDEFKFGCASLRVPPDL--LYQLRNDITVSPNGVAFVKSSVR 2501
Query: 1352 KGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSG 1411
+GVLPR+LEEIL TRIMVKQ++K + + L R+ +ARQL LKLIANVT+GYT+A FSG
Sbjct: 2502 RGVLPRMLEEILKTRIMVKQSMKAYR-NDKALSRLLDARQLGLKLIANVTFGYTSANFSG 2560
Query: 1412 RMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI 1459
RMPC E+ DSIV R TLE+AI VN+ +KW A+V+YGDTD V +
Sbjct: 2561 RMPCVEVGDSIVHKARETLERAIKMVNDTKKWGARVVYGDTDSMFVLL 2608
Score = 259 (96.2 bits), Expect = 5.5e-132, Sum P(7) = 5.5e-132
Identities = 49/111 (44%), Positives = 73/111 (65%)
Query: 10 IFSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPY 69
+FSVRIV+ D+YM+ PI D+CYS + V +VPV+R++G+TPAGQKTCLH+H PY
Sbjct: 1 MFSVRIVTADYYMSSPIRELDVCYSEFRESDVKKVPVVRIFGATPAGQKTCLHLHGIFPY 60
Query: 70 LYVPCADIPVQLRQEDDGYMHAISLALEKALKVK-GSAGSKRQHVHECSLV 119
+YVP QE D Y+ ++ ++++AL + G+ S QH+ + LV
Sbjct: 61 IYVPYDGFG----QEADRYLRQVAYSIDRALNISMGNPSSNVQHIFKVVLV 107
Score = 175 (66.7 bits), Expect = 5.5e-132, Sum P(7) = 5.5e-132
Identities = 53/173 (30%), Positives = 83/173 (47%)
Query: 926 SQISGPDG-RSKPTPLSQIGFQDPASAGAGEQLTLLSIEVQAESRGDLRPDPRYDSINVV 984
SQI GP S +S Q+ + + LTL+S+E+ A +R +L PDP +D I +
Sbjct: 2086 SQIEGPSFCNSYGFKVSMQNLQEAKALHEVQHLTLMSMELHARTRRNLEPDPEFDPICAL 2145
Query: 985 ALAFEND---SDHA---VEIYVLL---YCKSESHQRSLV------GIPDCKVFVCSKEIH 1029
+D D +E +++ C S RS G+ V E
Sbjct: 2146 FYCLSSDVLLHDSGTTRIEGAIVIDKESCTSAQASRSSTPFLFRCGVTGLPVTYTCDEKE 2205
Query: 1030 LFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESK 1082
LF I+ +DPDIL+G+++Q S G+L +RA+ LG+ L +SR P +S+
Sbjct: 2206 LFEEVSNIIRKYDPDILVGYEVQMHSWGYLLQRASTLGVNLCQQLSRVPGDSQ 2258
Score = 153 (58.9 bits), Expect = 5.5e-132, Sum P(7) = 5.5e-132
Identities = 27/43 (62%), Positives = 34/43 (79%)
Query: 123 KGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFR 165
+ GAV +KS QPHE+HIPFLLQ +DYNLYGM + L+ +KFR
Sbjct: 141 QAGAVMNKSFQPHEAHIPFLLQLFIDYNLYGMNMISLAAVKFR 183
Score = 57 (25.1 bits), Expect = 5.5e-132, Sum P(7) = 5.5e-132
Identities = 35/142 (24%), Positives = 64/142 (45%)
Query: 670 EREDADAHD-IKEATAVTGGSVRDLMRRKRSYRESSECEPPRVKRVNVTGEQKNALSMCE 728
E ++A+ D + EA + T + D+ +R +S R S P R R G + + C+
Sbjct: 1431 EEQEANKSDGLTEAVSSTSQNT-DVAKRAKSKRTLSS--PSRKPR----GARTKVQTRCK 1483
Query: 729 KQLEFDTLQNDEC---EKCPLK-GGTGISTVCK-ENMESPSPFDTKKEDASVSVGDWKAD 783
K + D Q ++C + P+ G + C E+ SP D + D +V +G +
Sbjct: 1484 KNKQDD--QRNDCLSSDGSPVFFSDPGFDSCCSVEDSLSPELPDNYRFDINV-IGQTEFS 1540
Query: 784 NCKE-SKFDATS-VEPRELQSD 803
+ ++F T + P++ SD
Sbjct: 1541 SLYSGNQFVLTDKILPQKFLSD 1562
Score = 54 (24.1 bits), Expect = 5.5e-132, Sum P(6) = 5.5e-132
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 814 QGSLTGVPTLYLNDGSCLYMLRPPFSPPSVDSVHKWLLHD-DKGASGDMDKASVEHSSLK 872
+G +PT + SC + P S ++ + K + D SG +ASV H K
Sbjct: 862 KGDFADIPT----NISCTKVASLPGSKYTLRTKRKRIYEKGDHPRSGSSKQASVHHDDPK 917
Query: 873 GSD 875
GSD
Sbjct: 918 GSD 920
Score = 54 (24.1 bits), Expect = 1.1e-131, Sum P(7) = 1.1e-131
Identities = 32/136 (23%), Positives = 54/136 (39%)
Query: 690 VRDLMRRKRSYRESSECEPPRVKRVNVTGEQKNALSMCEKQLEFDTLQNDECEKCPLKGG 749
+++L++ KR +E E V+ +N + ++ TL + + P
Sbjct: 1420 LKELLQ-KRQLKEEQEANKSDGLTEAVSSTSQNT-DVAKRAKSKRTLSSPS--RKPRGAR 1475
Query: 750 TGISTVCKENMESPSPFDTKKEDAS-VSVGDWKADNCKESKFDATSVEPRELQSDHPNNN 808
T + T CK+N + D D S V D D+C SVE L + P+N
Sbjct: 1476 TKVQTRCKKNKQDDQRNDCLSSDGSPVFFSDPGFDSC-------CSVED-SLSPELPDNY 1527
Query: 809 DSNLNQGSLTGVPTLY 824
++N T +LY
Sbjct: 1528 RFDINVIGQTEFSSLY 1543
Score = 52 (23.4 bits), Expect = 5.5e-132, Sum P(7) = 5.5e-132
Identities = 30/140 (21%), Positives = 62/140 (44%)
Query: 439 SSEMVGAPGQKEPLIFGIDIPQATDTEALGLLKWLATSQAAEDL-----NSDDELLHETI 493
SS+ G +E + +D+ +A + G A +Q + NSDDE +
Sbjct: 403 SSQSAIFDGSQEQAM--VDLLEALANDGFGDKSSKAVTQQLTGIASCVYNSDDEEAGPEL 460
Query: 494 LSPLLPETTIDKVL-EKANTDYERESQKECQDILDSIEDEVNVDGLEERNSSTVDPSNHP 552
E+ + K++ ++ ++D S ++ + + N EE+ +S+ + N
Sbjct: 461 EKK---ESELSKIMSQRWDSDIPEPSARQ------RLFMKANESSSEEQQASSDEEGNWK 511
Query: 553 ETSSHK---KIPQIDGSSDD 569
+S + IPQ+DG++D+
Sbjct: 512 GINSFQTDLSIPQLDGAADE 531
Score = 46 (21.3 bits), Expect = 2.3e-131, Sum P(7) = 2.3e-131
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 527 DSIEDEVNVDGLEERNSSTVDPSNHPETSSHKKIPQIDGSSDDL 570
+SIE N+ L+E V P HP +S+ + ++D DL
Sbjct: 601 ESIESS-NISSLKE-----VTPVKHPISSNSRITYKVDSDHPDL 638
Score = 43 (20.2 bits), Expect = 4.7e-131, Sum P(7) = 4.7e-131
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 515 ERESQKECQDILDSIEDEVNVDGLEERNSSTVDPSNHPETSSHKKIPQIDGSSDDLY 571
E+ K +DIL E ++ G E S D S + S ++P I S DL+
Sbjct: 307 EKIFMKRVKDILRENEFDMTQAGSEM--DSFPDLSLYSTVLSPDRLPSIHASQVDLH 361
Score = 43 (20.2 bits), Expect = 4.8e-131, Sum P(6) = 4.8e-131
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 667 DALEREDADAHDIKEATAVTGGSVRDLMR 695
D E +D D ++ E+ + V+D++R
Sbjct: 291 DVTESQDRDLAEVAESEKIFMKRVKDILR 319
Score = 39 (18.8 bits), Expect = 5.5e-132, Sum P(7) = 5.5e-132
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 615 KKLWGSLPFSVSEQF 629
KK W +P S +E++
Sbjct: 984 KKFWPKIPESTAEKY 998
Score = 37 (18.1 bits), Expect = 3.7e-25, Sum P(4) = 3.7e-25
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 1417 ELADSIVQCGRSTLEKAISFVNE 1439
+LAD +CG S IS + E
Sbjct: 591 DLADKHSKCGESIESSNISSLKE 613
>UNIPROTKB|F1P7D5 [details] [associations]
symbol:REV3L "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 CTD:5980 KO:K02350 OMA:DGTADEN GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:AAEX03008609 EMBL:AAEX03008610
RefSeq:XP_539084.3 Ensembl:ENSCAFT00000006350 GeneID:481963
KEGG:cfa:481963 Uniprot:F1P7D5
Length = 3136
Score = 904 (323.3 bits), Expect = 2.1e-131, Sum P(7) = 2.1e-131
Identities = 180/347 (51%), Positives = 244/347 (70%)
Query: 1118 DEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWF 1177
D++G S +++ GRI LN+WR+MR EV L YT E V+ VL ++ P FRVL+ WF
Sbjct: 2452 DDYGSETMSEINIVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQRFPLFTFRVLSDWF 2511
Query: 1178 ASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVES 1237
+ R++ V++ + R + NL+++ QLD+I +TSE+AR+FGI F VL+RGSQYRVES
Sbjct: 2512 DNKTDLYRWKMVDHYISRVRGNLQMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVES 2571
Query: 1238 MLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIA 1297
M+LR+A NY+ ++P Q + A +C+PL+MEPES FY++ V+VLDFQSLYPS++IA
Sbjct: 2572 MMLRIAKPMNYIPVTPSVQQRSQMRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIA 2631
Query: 1298 YNLCFCTCLGKI--LPS-KENTLGVSSFR--PDLHVLRDLKDELLIPPNGVMYVPPKVRK 1352
YN CF TCLG + L E G +S R PDL L ++ ++ + PNG+ +V P VRK
Sbjct: 2632 YNYCFSTCLGHVENLGKYDEFKFGCTSLRVPPDL--LYQIRHDITVSPNGIAFVKPSVRK 2689
Query: 1353 GVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGR 1412
GVLPR+LEEIL TR+MVKQ++K + L R+ +ARQL LKLIANVT+GYTAA FSGR
Sbjct: 2690 GVLPRMLEEILKTRLMVKQSMKAYK-QDRALSRMLDARQLGLKLIANVTFGYTAANFSGR 2748
Query: 1413 MPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI 1459
MPC E+ DSIV R TLE+AI VN+ +KW A+V+YGDTD V +
Sbjct: 2749 MPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLL 2795
Score = 256 (95.2 bits), Expect = 2.1e-131, Sum P(7) = 2.1e-131
Identities = 52/111 (46%), Positives = 72/111 (64%)
Query: 10 IFSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPY 69
+FSVRIV+ D+YMA P+ G D C L V +VPV+RV+G+TPAGQKTCLH+H PY
Sbjct: 1 MFSVRIVTADYYMASPLRGLDTCLCPLTQAPVKKVPVVRVFGATPAGQKTCLHLHGIFPY 60
Query: 70 LYVPCADIPVQLRQEDDGYMHAISLALEKALKVK-GSAGSKRQHVHECSLV 119
LYVP Q+ + Y+ ++ ++++AL V G+ S QHV + SLV
Sbjct: 61 LYVPYDGYG----QQPESYLSQMAFSIDRALNVALGNPSSTAQHVFKVSLV 107
Score = 174 (66.3 bits), Expect = 2.1e-131, Sum P(7) = 2.1e-131
Identities = 56/177 (31%), Positives = 87/177 (49%)
Query: 923 QDISQISGPD-GRSKPTPLSQIGFQDPASAGAGEQLTLLSIEVQAESRGDLRPDPRYDSI 981
++ SQI GP + +S Q+ + + LTL+S+E+ A +R DL PDP +D I
Sbjct: 2268 KETSQIDGPSLNNTYGFKVSVQNLQEAKALHEIQNLTLISVELHARTRRDLEPDPEFDPI 2327
Query: 982 NVVALAFENDS-----DHAVEIYVLLYCKSES-------HQRSLV---GIPDCKVFVCSK 1026
+ +D+ D V++ K ++ +Q L+ GI +V
Sbjct: 2328 CALFYCISSDTPLPDTDKTELTGVIVIDKDKTVSSQDIRYQTPLLIRSGITGLEVTYAPD 2387
Query: 1027 EIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESKI 1083
E LF I+ +DPDIL+G++IQ S G+L +RAA L + L ISR P + KI
Sbjct: 2388 EKALFQEIADIIKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLGQMISRVP-DDKI 2443
Score = 145 (56.1 bits), Expect = 2.1e-131, Sum P(7) = 2.1e-131
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 116 CSLVRAKKGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFR 165
C L+++ GA+ +K QPHE+HIP+LLQ +DYNLYGM ++L+ +KFR
Sbjct: 137 CELLQS---GAIMNKFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFR 183
Score = 50 (22.7 bits), Expect = 2.1e-131, Sum P(7) = 2.1e-131
Identities = 47/238 (19%), Positives = 91/238 (38%)
Query: 599 VPQDTW-TNAASKCNVKKKLWGSLPFSVSEQFNKDIET-VSCNISSLCVTEVKDHGATGS 656
V W +N C K+ L + S +E+ + E + + +SL + + G+
Sbjct: 468 VMSQRWDSNIEEPCAKKRSLCRNTRRSSTEEDDSSSEEEMEWSNNSLLLANLSIPQLDGT 527
Query: 657 LVGNELGKSFDALEREDADAHDIKEATAVTGGSVRDLMRRKRSYRESSECEPPRVKRVNV 716
N S + L E++ H AT+ SV+ + K +++ EPP ++
Sbjct: 528 ADEN----SDNPLNNENSRTHSSVIATSKL--SVKPSIFHK----DAATLEPPSSAKITF 577
Query: 717 TGEQKNALS---MCEKQLEFDTLQNDECEKCPLKGGTGISTVCKENMESPSPFDTKKEDA 773
+ +ALS + ++ L D Q + EKC + +M+ P +
Sbjct: 578 QCKHTSALSSHVLNKEDLIEDLPQPNNIEKCIDHSVASFTNESTYSMKYPGSLSSSVHSE 637
Query: 774 SVSVGDWKAD-----NCKESKFDATSVEPRELQSDHPNNNDSNLNQGSLTGVPTLYLN 826
+ K D +C+ S FD P + P+ +N+ + P +++N
Sbjct: 638 NSHKESSKKDILPVSSCESSIFDYEEDIP-SVPRQVPSRKYTNIRKID-KDTPFIHMN 693
Score = 48 (22.0 bits), Expect = 2.1e-131, Sum P(7) = 2.1e-131
Identities = 20/89 (22%), Positives = 35/89 (39%)
Query: 485 DDELLHETILSPLLPETTIDKVLEKANTDYERESQKECQ----DILDSI-EDEVNVDGLE 539
+DE+ IL + P++T + ++ D E Q L +I EDE
Sbjct: 216 EDEIPSSLILEGVEPQSTCELEVDAVAADILNRLDIEAQIGGNPGLQAIWEDEKQ----R 271
Query: 540 ERNSSTVDPSNHPETSSHKKIPQIDGSSD 568
RN + N PE+ + +P + +
Sbjct: 272 RRNRNETSQINQPESQDRRFVPATESEKN 300
Score = 48 (22.0 bits), Expect = 4.6e-130, Sum P(7) = 4.6e-130
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 539 EERNSSTVDP---SNHPETSSHKKIPQIDGSSDD 569
EE +SS+ + SN+ ++ IPQ+DG++D+
Sbjct: 497 EEDDSSSEEEMEWSNNSLLLANLSIPQLDGTADE 530
Score = 46 (21.3 bits), Expect = 8.7e-131, Sum P(7) = 8.7e-131
Identities = 20/91 (21%), Positives = 36/91 (39%)
Query: 754 TVCKENMESPSPFD--TKKEDASVSVGDWKADNCKESKFDATSVEPRELQSDHPNNNDSN 811
++C+ S + D + +E+ S N + D T+ E SD+P NN+++
Sbjct: 486 SLCRNTRRSSTEEDDSSSEEEMEWSNNSLLLANLSIPQLDGTADE----NSDNPLNNENS 541
Query: 812 LNQGSLTGVPTLYLNDGSCLYMLRPPFSPPS 842
S+ L + S + PPS
Sbjct: 542 RTHSSVIATSKLSVKP-SIFHKDAATLEPPS 571
Score = 45 (20.9 bits), Expect = 2.1e-131, Sum P(7) = 2.1e-131
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 832 YMLRPPFSPPSVDSVHKWLL-HD 853
++L+P SPPS + + LL HD
Sbjct: 1878 HILKPLMSPPSREEIMATLLDHD 1900
Score = 45 (20.9 bits), Expect = 8.2e-24, Sum P(4) = 8.2e-24
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 263 LSQTRSDVKMVQSLVPIWEVCSHPIYKLFNIQYIYPLVNFTTFQEE 308
+S+ R +++M++ L I + + +LF IQ+++ L + ++ E
Sbjct: 2527 ISRVRGNLQMLEQLDLIGKTSE--MARLFGIQFLHVLTRGSQYRVE 2570
Score = 43 (20.2 bits), Expect = 3.3e-131, Sum P(7) = 3.3e-131
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 847 HKWLLHDDKGASGDMDKASVEHSSLKGSDIRPVLEE 882
+++L HD++ D AS S ++ S + P L E
Sbjct: 1696 NEFLSHDNQKCDEDKHHASDSTSWIRSSTLSPELFE 1731
Score = 43 (20.2 bits), Expect = 4.6e-24, Sum P(6) = 4.6e-24
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 1010 QRSLVGIPDCKVFVCSKEIHLFSHFIKILC--SFDPDILMGWD 1050
QRS + P C + E +S+ + +L S P I++ ++
Sbjct: 2591 QRSQMRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYN 2633
Score = 41 (19.5 bits), Expect = 1.1e-130, Sum P(7) = 1.1e-130
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 512 TDYERESQKECQDILDSIEDEVNVDGLEERNSSTVDPSNHPETSSHKKI 560
T+ E+ QK Q+IL + V + G + + + + S E + H ++
Sbjct: 295 TESEKNFQKRLQEILKQNDFSVTLSGSVDYSDGSQEFS--AELTLHSEV 341
Score = 41 (19.5 bits), Expect = 4.9e-24, Sum P(5) = 4.9e-24
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 1312 SKENTLGVSSFR-PDL-HVLRDLKDE 1335
S ENTLG +SF DL H L E
Sbjct: 696 SSENTLGKNSFNFSDLSHPKNKLPSE 721
Score = 37 (18.1 bits), Expect = 4.6e-130, Sum P(7) = 4.6e-130
Identities = 32/142 (22%), Positives = 57/142 (40%)
Query: 704 SECEPPRVKRVNVTGEQKNALSMCEKQLEF--DTLQNDECEKCPLKGGTGISTVCKENME 761
S+C+ V + GE ++ L++ ++ L+ QN + PL + ++E
Sbjct: 1509 SQCKSRNVSTPSAFGEGQSGLAVLKELLQKRQQKAQNANIMQDPLSNKHQPNKNISGSLE 1568
Query: 762 SPSPFDTKKEDASVSVGDWKADNCKESKFDATSVEPRELQSDHPNNNDSNLNQGSLTGVP 821
T K SV+ K + +K P+ ++ D N +S SL+
Sbjct: 1569 QNK---TVKRTRSVT-SSRKPRTPRSTK--PKEKIPKLIKVDSLNLQNSVQLDNSLSDDS 1622
Query: 822 TLYLND-G--SCLYMLRPPFSP 840
++ +D G SC Y L SP
Sbjct: 1623 PIFFSDPGFESC-YSLEDSLSP 1643
>UNIPROTKB|O60673 [details] [associations]
symbol:REV3L "DNA polymerase zeta catalytic subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IDA] [GO:0006261 "DNA-dependent DNA
replication" evidence=TAS] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0051539 GO:GO:0006261
SUPFAM:SSF53098 GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 EMBL:AF058701 EMBL:AF071798 EMBL:AF157476
EMBL:AF179428 EMBL:AF179429 EMBL:AF078695 EMBL:AY684169
EMBL:AL080317 EMBL:AL136310 EMBL:AL512325 EMBL:AF035537
IPI:IPI00248651 IPI:IPI00745230 RefSeq:NP_002903.3
UniGene:Hs.232021 PDB:3ABD PDB:3ABE PDB:3VU7 PDBsum:3ABD
PDBsum:3ABE PDBsum:3VU7 ProteinModelPortal:O60673 SMR:O60673
IntAct:O60673 STRING:O60673 PhosphoSite:O60673 PaxDb:O60673
PRIDE:O60673 Ensembl:ENST00000358835 Ensembl:ENST00000368802
Ensembl:ENST00000368805 Ensembl:ENST00000435970 GeneID:5980
KEGG:hsa:5980 UCSC:uc003pux.4 CTD:5980 GeneCards:GC06M111665
H-InvDB:HIX0017582 HGNC:HGNC:9968 MIM:602776 neXtProt:NX_O60673
PharmGKB:PA34337 HOGENOM:HOG000112263 HOVERGEN:HBG000426
InParanoid:O60673 KO:K02350 OMA:DGTADEN OrthoDB:EOG4NVZJD
PhylomeDB:O60673 ChiTaRS:REV3L EvolutionaryTrace:O60673
GenomeRNAi:5980 NextBio:23277 ArrayExpress:O60673 Bgee:O60673
CleanEx:HS_REV3L Genevestigator:O60673 GermOnline:ENSG00000009413
GO:GO:0016035 Uniprot:O60673
Length = 3130
Score = 946 (338.1 bits), Expect = 1.4e-122, Sum P(6) = 1.4e-122
Identities = 231/554 (41%), Positives = 329/554 (59%)
Query: 923 QDISQISGPD-GRSKPTPLSQIGFQDPASAGAGEQLTLLSIEVQAESRGDLRPDPRYDSI 981
++ SQI GP + +S Q+ + + LTL+S+E+ A +R DL PDP +D I
Sbjct: 2262 KETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLEPDPEFDPI 2321
Query: 982 NVVALAFENDSDHAVEIYVLLYCKSESHQRSLVGIPDCKVFVCSKEIHLFSHFIKILCSF 1041
AL + SD + ++ + L G V V K+ +FS I+ +
Sbjct: 2322 --CALFYCISSDTPLP---------DTEKTELTG-----VIVIDKDKTVFSQDIR----Y 2361
Query: 1042 DPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESKIAAG-DSEISERG-ITDNM 1099
+L+ I G + + A+ A L + N I R + I G + ++ G +
Sbjct: 2362 QTPLLIRSGITGLEVTYAADEKA-LFHEIANIIKR--YDPDILLGYEIQMHSWGYLLQRA 2418
Query: 1100 LAEPVVAESLLAK--DAIIE-------DEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNM 1150
A + ++++ D IE DE+G S +++ GRI LN+WR+MR EV L
Sbjct: 2419 AALSIDLCRMISRVPDDKIENRFAAERDEYGSYTMSEINIVGRITLNLWRIMRNEVALTN 2478
Query: 1151 YTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMIN 1210
YT E V+ VL ++ P FRVL+ WF + R++ V++ V R + NL+++ QLD+I
Sbjct: 2479 YTFENVSFHVLHQRFPLFTFRVLSDWFDNKTDLYRWKMVDHYVSRVRGNLQMLEQLDLIG 2538
Query: 1211 RTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECLPLV 1270
+TSE+AR+FGI F VL+RGSQYRVESM+LR+A NY+ ++P Q + A +C+PL+
Sbjct: 2539 KTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQMRAPQCVPLI 2598
Query: 1271 MEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKI--LPS-KENTLGVSSFR--PD 1325
MEPES FY++ V+VLDFQSLYPS++IAYN CF TCLG + L E G +S R PD
Sbjct: 2599 MEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRVPPD 2658
Query: 1326 LHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHR 1385
L L ++ ++ + PNGV +V P VRKGVLPR+LEEIL TR MVKQ++K + L R
Sbjct: 2659 L--LYQVRHDITVSPNGVAFVKPSVRKGVLPRMLEEILKTRFMVKQSMKAYK-QDRALSR 2715
Query: 1386 IFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKA 1445
+ +ARQL LKLIANVT+GYT+A FSGRMPC E+ DSIV R TLE+AI VN+ +KW A
Sbjct: 2716 MLDARQLGLKLIANVTFGYTSANFSGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGA 2775
Query: 1446 KVIYGDTDRYTVCI 1459
+V+YGDTD V +
Sbjct: 2776 RVVYGDTDSMFVLL 2789
Score = 262 (97.3 bits), Expect = 1.4e-122, Sum P(6) = 1.4e-122
Identities = 53/111 (47%), Positives = 73/111 (65%)
Query: 10 IFSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPY 69
+FSVRIV+ D+YMA P+ G D C S L V +VPV+RV+G+TPAGQKTCLH+H PY
Sbjct: 1 MFSVRIVTADYYMASPLQGLDTCQSPLTQAPVKKVPVVRVFGATPAGQKTCLHLHGIFPY 60
Query: 70 LYVPCADIPVQLRQEDDGYMHAISLALEKALKVK-GSAGSKRQHVHECSLV 119
LYVP Q+ + Y+ ++ ++++AL V G+ S QHV + SLV
Sbjct: 61 LYVPYDGYG----QQPESYLSQMAFSIDRALNVALGNPSSTAQHVFKVSLV 107
Score = 145 (56.1 bits), Expect = 1.4e-122, Sum P(6) = 1.4e-122
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 116 CSLVRAKKGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFR 165
C L+++ GA+ +K QPHE+HIP+LLQ +DYNLYGM ++L+ +KFR
Sbjct: 137 CELLQS---GAIMNKFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFR 183
Score = 49 (22.3 bits), Expect = 1.4e-122, Sum P(6) = 1.4e-122
Identities = 20/81 (24%), Positives = 33/81 (40%)
Query: 486 DELLHETILSPLLPETTIDKVLEKANTDYERESQKECQ----DILDSI-EDEVNVDGLEE 540
DE+ IL + P++T + ++ D E Q L +I EDE
Sbjct: 217 DEIPSSLILEGVEPQSTCELEVDAVAADILNRLDIEAQIGGNPGLQAIWEDEKQ----RR 272
Query: 541 RNSSTVDPSNHPETSSHKKIP 561
RN + + PE+ H+ +P
Sbjct: 273 RNRNETSQMSQPESQDHRFVP 293
Score = 44 (20.5 bits), Expect = 9.9e-24, Sum P(4) = 9.9e-24
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 263 LSQTRSDVKMVQSLVPIWEVCSHPIYKLFNIQYIYPLVNFTTFQEE 308
+S+ R +++M++ L I + + +LF IQ+++ L + ++ E
Sbjct: 2521 VSRVRGNLQMLEQLDLIGKTSE--MARLFGIQFLHVLTRGSQYRVE 2564
Score = 43 (20.2 bits), Expect = 1.4e-122, Sum P(6) = 1.4e-122
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 833 MLRPPFSPPSVDSVHKWLL-HD 853
+L+P SPPS + + LL HD
Sbjct: 1877 ILKPLMSPPSREEIMATLLDHD 1898
Score = 42 (19.8 bits), Expect = 1.4e-122, Sum P(6) = 1.4e-122
Identities = 33/142 (23%), Positives = 54/142 (38%)
Query: 704 SECEPPRVKRVNVTGEQKNALSMCEKQLEF--DTLQNDECEKCPLKGGTGISTVCKENME 761
S+C+ V + GE ++ L++ ++ L+ QN + PL +N+
Sbjct: 1507 SQCKNRNVSTPSAFGEGQSGLAVLKELLQKRQQKAQNANTTQDPLSN----KHQPNKNI- 1561
Query: 762 SPSPFDTKKEDASVSVGDWKADNCKESKFDATSVEPRELQSDHPN-NNDSNLNQGSLTGV 820
S S K + SV + S + P+ L+ D N N S L+
Sbjct: 1562 SGSLEHNKANKRTRSVTSPRKPRTPRSTKQKEKI-PKLLKVDSLNLQNSSQLDNSVSDDS 1620
Query: 821 PTLYLNDG--SCLYMLRPPFSP 840
P + + G SC Y L SP
Sbjct: 1621 PIFFSDPGFESC-YSLEDSLSP 1641
Score = 42 (19.8 bits), Expect = 7.2e-122, Sum P(6) = 7.2e-122
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 512 TDYERESQKECQDILDSIEDEVNVDGLEERNSSTVDPSNHPETSSHKKI 560
T+ E++ QK Q+IL + V + G + + + + S E + H ++
Sbjct: 295 TESEKKFQKRLQEILKQNDFSVTLSGSVDYSDGSQEFS--AELTLHSEV 341
Score = 42 (19.8 bits), Expect = 7.2e-122, Sum P(6) = 7.2e-122
Identities = 24/92 (26%), Positives = 45/92 (48%)
Query: 483 NSDDELLHETILSPLLPETTIDKVL-EKANTDYERESQKE---CQDI-LDSIEDEVNVDG 537
NSDDE I E + V+ ++ +++ E K+ C++ S ED+ + G
Sbjct: 448 NSDDEENEPQIEKE---EMELSLVMSQRWDSNIEEHCAKKRSLCRNTHRSSTEDDDSSSG 504
Query: 538 LEERNSSTVDPSNHPETSSHKKIPQIDGSSDD 569
EE ++ S++ + IPQ+DG++D+
Sbjct: 505 -EE-----MEWSDNSLLLASLSIPQLDGTADE 530
Score = 37 (18.1 bits), Expect = 2.4e-121, Sum P(6) = 2.4e-121
Identities = 19/75 (25%), Positives = 33/75 (44%)
Query: 403 LSALAPQGLVHQEKIS-----LMPSKGKDTCPELPFG-GEIHSSEMVGAPGQKEPLIFGI 456
LSA P G+ Q+K+S + SK P ++H S + + G P + I
Sbjct: 1278 LSASLPTGINAQQKLSGCFSSFLESKKSVDLQTFPSSRDDLHPSVVCNSIG---PGVSKI 1334
Query: 457 DIPQATDTEALGLLK 471
++ + + A+ LK
Sbjct: 1335 NVQRPHNQSAMFTLK 1349
Score = 37 (18.1 bits), Expect = 9.9e-24, Sum P(4) = 9.9e-24
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 914 EPNACADCLQDISQISGPDGRSKPTPLSQIGFQDP 948
+P AC L+ ++ D RS+P Q+G + P
Sbjct: 2920 KPGACVPALELTRKMLTYDRRSEP----QVGERVP 2950
>UNIPROTKB|F1NQT0 [details] [associations]
symbol:REV3L "DNA polymerase" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 OMA:DGTADEN
GeneTree:ENSGT00550000074640 EMBL:AADN02002055 EMBL:AADN02002056
IPI:IPI00582758 Ensembl:ENSGALT00000024245 Uniprot:F1NQT0
Length = 3100
Score = 897 (320.8 bits), Expect = 1.0e-120, Sum P(7) = 1.0e-120
Identities = 183/347 (52%), Positives = 240/347 (69%)
Query: 1118 DEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWF 1177
DE+G S +++ GRI+LN+WR+MR EV L YT E V VL ++ P FRVL+ WF
Sbjct: 2416 DEYGSDTMSEINIVGRIILNIWRMMRNEVNLMNYTFENVGFHVLHQRFPLFTFRVLSDWF 2475
Query: 1178 ASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVES 1237
+ R++ V++ V R NL+++ +LD+I+RTSE+AR+FGI F VL+RGSQYRVES
Sbjct: 2476 DNKADVYRWKMVDHYVSRVHGNLQLLQKLDLIDRTSEMARLFGIQFLHVLTRGSQYRVES 2535
Query: 1238 MLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIA 1297
M+LR+A NY+ ++P Q A A +C+PL+MEPES FY++ V+VLDFQSLYPS++IA
Sbjct: 2536 MMLRVAKPMNYIPVTPSIQQRAQMKAPQCVPLIMEPESRFYSNAVLVLDFQSLYPSIVIA 2595
Query: 1298 YNLCFCTCLGKILP-SKENTL--GVSSFR--PDLHVLRDLKDELLIPPNGVMYVPPKVRK 1352
YN CF TCLG + K + G +S R PDL L ++ ++ + P+GV +V P VRK
Sbjct: 2596 YNYCFSTCLGPVENLGKYDAFKFGCTSLRVPPDL--LYQIRHDITVSPSGVAFVKPSVRK 2653
Query: 1353 GVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGR 1412
GVLPR+LEEIL TRIMVKQ++K + I R+ ARQL LK IAN TYGYTAA FSGR
Sbjct: 2654 GVLPRMLEEILKTRIMVKQSMKAYKHDKAIT-RMLEARQLGLKYIANFTYGYTAANFSGR 2712
Query: 1413 MPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI 1459
MPC EL DSIV R TLE+AI VN+ +KW A V+YGDTD V +
Sbjct: 2713 MPCIELGDSIVHKARETLERAIKLVNDTKKWGAHVVYGDTDSMFVLL 2759
Score = 191 (72.3 bits), Expect = 1.0e-120, Sum P(7) = 1.0e-120
Identities = 64/204 (31%), Positives = 100/204 (49%)
Query: 923 QDISQISGPD-GRSKPTPLSQIGFQDPASAGAGEQLTLLSIEVQAESRGDLRPDPRYDSI 981
++ SQI GP + +S Q+ S + LTL+S+E+ A +R DL PDP +D I
Sbjct: 2232 RETSQIEGPSLNNTYGFKVSVQNLQEAKSLHEVQHLTLISMELHARTRRDLEPDPEFDPI 2291
Query: 982 NVVALAFENDS----DHAVEIYVLLYCKSE---SHQRS-----LV---GIPDCKVFVCSK 1026
+ +D+ EI + S+ S Q S L+ GI +V +
Sbjct: 2292 CALFYCVSSDTALPNTDKKEITGAIVIDSDRTLSSQGSRDQAPLLTRSGITGLEVSYATD 2351
Query: 1027 EIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESKIAAG 1086
E LF + I+ +DPDIL+G+++Q S G+L +RAA L + L ISR P ++K
Sbjct: 2352 ERTLFQEVVNIVKRYDPDILLGYEVQMHSWGYLLQRAAALNVDLCQMISRVPDDNKENRF 2411
Query: 1087 DSEISERGITDNMLAEPVVAESLL 1110
+E+ E G +D M +V +L
Sbjct: 2412 AAELDEYG-SDTMSEINIVGRIIL 2434
Score = 156 (60.0 bits), Expect = 1.0e-120, Sum P(7) = 1.0e-120
Identities = 28/50 (56%), Positives = 39/50 (78%)
Query: 116 CSLVRAKKGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFR 165
C L++ GGA+ +KS QPHE+HIP+LLQ +DYNLYGM ++L+ +KFR
Sbjct: 91 CELLQ---GGAIMNKSYQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFR 137
Score = 123 (48.4 bits), Expect = 1.0e-120, Sum P(7) = 1.0e-120
Identities = 27/65 (41%), Positives = 38/65 (58%)
Query: 56 GQKTCLHIHRALPYLYVPCADIPVQLRQEDDGYMHAISLALEKALKVK-GSAGSKRQHVH 114
GQKTCLH+H PYLYVP Q + Y+ ++ ++++AL V G+ S QHV
Sbjct: 1 GQKTCLHLHGVFPYLYVPYDGFG----QHPEHYLRQVAFSIDRALNVALGNPSSTIQHVF 56
Query: 115 ECSLV 119
+ SLV
Sbjct: 57 KVSLV 61
Score = 70 (29.7 bits), Expect = 1.0e-120, Sum P(7) = 1.0e-120
Identities = 25/77 (32%), Positives = 35/77 (45%)
Query: 497 LLPETTIDKVLEKANTDYERESQKECQD--ILDSIEDEVNVDGLEERNSSTVDPSNHPET 554
L+ E I ++E + + + R SQK CQ LDS DE +D L S +H
Sbjct: 331 LINEEAILNIVENSQS-FHRLSQKLCQTTVFLDSA-DEAMIDVLAGLESDGYQMEHHKAL 388
Query: 555 SSHKKIPQIDGS--SDD 569
S H+ + S SDD
Sbjct: 389 SHHRSLGSCRNSQNSDD 405
Score = 54 (24.1 bits), Expect = 2.5e-106, Sum P(8) = 2.5e-106
Identities = 26/104 (25%), Positives = 40/104 (38%)
Query: 909 EGHIAEPNACADCLQDISQISGPDGRS-KPTPLSQIGFQDPASAGAGEQL--TLLSIEVQ 965
+ H AE A+ S + DGR PT S DP A E ++ +I
Sbjct: 1989 KNHPAELEKAAENFS--STVFLEDGRPIVPTKDSPASVADPTKAQTKETCDKSVSTIGAS 2046
Query: 966 AESRGDL-RPDPRYDSINVVALAFENDSDHAVEIYVLLYCKSES 1008
+ D+ + +S + A A E D + E Y + Y +S
Sbjct: 2047 INIKSDIDSSETTSESKTLTASALERDKEEEEEDYYVSYSSPDS 2090
Score = 49 (22.3 bits), Expect = 1.5e-119, Sum P(8) = 1.5e-119
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 240 SSIFLYDDCVGDIVNQ-RLMMYTSLSQTRSDVKMV 273
++IF Y+D + + Q YTS+ +T DV +
Sbjct: 608 NNIFEYEDDISSVSRQIPSRKYTSIRKTEKDVSFM 642
Score = 48 (22.0 bits), Expect = 1.5e-119, Sum P(8) = 1.5e-119
Identities = 22/106 (20%), Positives = 41/106 (38%)
Query: 456 IDIPQATDTEALGLLKWLATSQAAED---LNSDDELLHETILSPLLPETTID--KVLEKA 510
ID +TE K+ T A LN + I S + ETT + L+
Sbjct: 1720 IDTSCTQETEVCLNEKFKLTRNAVNKERFLNLPQPTSSDWIQSHIRKETTFGPCQPLDSV 1779
Query: 511 NTDYERESQKECQDILDSIEDEVNVDGLEERNSSTVDPSNHPETSS 556
NT + +++D+ +++ + + T P + P ++S
Sbjct: 1780 NTSFTSVLSSPDGELIDAASEDLELYVSRNNEALTPTPDSSPRSTS 1825
Score = 45 (20.9 bits), Expect = 1.0e-120, Sum P(7) = 1.0e-120
Identities = 22/97 (22%), Positives = 39/97 (40%)
Query: 758 ENMESPSPFDTKKEDASVSVGDWKADNCKESKFDATSVEPRELQSDHPNNNDSNLNQGSL 817
+ + SP P + EDA +WK+ + S V P + P+ + ++
Sbjct: 2097 QQVASPDPKQSNLEDA-----EWKSQDVILSSVKENDVAPVGSTQNSPSTQE-DIKMAFD 2150
Query: 818 TGVPTLYLNDGS----CLYMLRPPFSPPSVDSVHKWL 850
T L ++ G+ CL+ P S D +H+ L
Sbjct: 2151 TSPLLLSVDPGNSESICLHST-PITQRKSHDGIHEVL 2186
Score = 45 (20.9 bits), Expect = 1.7e-120, Sum P(8) = 1.7e-120
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 832 YMLRPPFSPPSVDSVHKWLL-HD 853
++L+P SPPS + + LL HD
Sbjct: 1841 HILKPLMSPPSREEIMATLLDHD 1863
Score = 43 (20.2 bits), Expect = 2.7e-120, Sum P(8) = 2.7e-120
Identities = 39/162 (24%), Positives = 66/162 (40%)
Query: 805 PNNNDSNLNQGSLTGVPTLYLNDGSCLYMLRPPFSPPSVDSVHKWLLHD--DK-----GA 857
P N+ + L + + T++L DG + + SP SV K + DK GA
Sbjct: 1988 PKNHPAELEKAAENFSSTVFLEDGRPIVPTKD--SPASVADPTKAQTKETCDKSVSTIGA 2045
Query: 858 S----GDMDKASV--EHSSLKGSDIRPVLEEMHQEADEMISTEPTPDLNGVTAIMHNEGH 911
S D+D + E +L S + EE +E D +S +PD + ++
Sbjct: 2046 SINIKSDIDSSETTSESKTLTASALERDKEE--EEEDYYVSYS-SPD----SPVLPPWQQ 2098
Query: 912 IAEPNACADCLQDISQISGPDGRSKPTPLSQIGFQDPASAGA 953
+A P+ L+D + +S+ LS + D A G+
Sbjct: 2099 VASPDPKQSNLEDA------EWKSQDVILSSVKENDVAPVGS 2134
Score = 43 (20.2 bits), Expect = 1.6e-118, Sum P(7) = 1.6e-118
Identities = 29/112 (25%), Positives = 45/112 (40%)
Query: 457 DIPQATDTEALGLLKWLATSQAAEDLNSDDELLHETILSPLLPETTIDKVLEKANTDYER 516
DI A DT L LL + + NS+ LH T ++ I +VL E
Sbjct: 2144 DIKMAFDTSPL-LL-------SVDPGNSESICLHSTPITQRKSHDGIHEVLGFTPLSTEP 2195
Query: 517 ESQKECQDILDSIEDEVNVDGLEERNSSTVDPSNHPETSSHKK-IPQIDGSS 567
+++K C + +N DGL +T + + K+ QI+G S
Sbjct: 2196 KARKLCH------KRGINTDGLRRVLLTTQMKNQFAALGAPKRETSQIEGPS 2241
Score = 40 (19.1 bits), Expect = 1.5e-119, Sum P(8) = 1.5e-119
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 351 EGQETVSSFGNDFEVLKSVACATDEENLIKL 381
E E VS G V+ S+ TDE L KL
Sbjct: 696 ENCELVSCSGGSRTVVHSLENNTDEGGLNKL 726
Score = 40 (19.1 bits), Expect = 1.3e-117, Sum P(7) = 1.3e-117
Identities = 6/10 (60%), Positives = 10/10 (100%)
Query: 560 IPQIDGSSDD 569
IPQ+DG++D+
Sbjct: 474 IPQLDGTADE 483
Score = 40 (19.1 bits), Expect = 5.8e-13, Sum P(8) = 5.8e-13
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 1010 QRSLVGIPDCKVFVCSKEIHLFSHFIKILC--SFDPDILMGWD 1050
QR+ + P C + E +S+ + +L S P I++ ++
Sbjct: 2555 QRAQMKAPQCVPLIMEPESRFYSNAVLVLDFQSLYPSIVIAYN 2597
Score = 38 (18.4 bits), Expect = 1.0e-120, Sum P(7) = 1.0e-120
Identities = 25/123 (20%), Positives = 55/123 (44%)
Query: 604 WTNAASKCNVKKKLWG-SLPFSVSEQFNKDIETVSCNISSLCVTEVKDHGATGSLVGNEL 662
W ++ + K++ G ++ S +E+ + E + + S++ +T + G+ +E
Sbjct: 427 WDSSIEEPGPKRRSAGKNMHRSSTEEDSSSEEEMEWSGSNMLLTNLSIPQLDGT--ADEN 484
Query: 663 GKSFDALEREDADAHDIKEATAVTGGSVRDLMRRKRSYRESSECEPPRVKRVNVTGEQKN 722
G + L E + H AT+ SV+ + K +++ EPP ++ + +
Sbjct: 485 GDN--PLNNESSRTHSSVIATSKM--SVKTSIFHK----DAATLEPPSSAKITFQCKHTS 536
Query: 723 ALS 725
ALS
Sbjct: 537 ALS 539
Score = 38 (18.4 bits), Expect = 1.7e-120, Sum P(8) = 1.7e-120
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 753 STVCKENMESPSPFDTKK 770
S+V K + ESP P K
Sbjct: 1403 SSVLKSSEESPGPLQLPK 1420
Score = 38 (18.4 bits), Expect = 1.7e-120, Sum P(8) = 1.7e-120
Identities = 15/77 (19%), Positives = 33/77 (42%)
Query: 748 GGTGISTVCKENMESPSPFDTKKEDASVSVGDWKADNCKESKFDATSVEPRELQSDHPNN 807
G TG + + P+ + ++ S +V D + E+ F + + + + H ++
Sbjct: 1616 GQTGFCSFYSASQFVPADQNLPQKFLSDAVQDLGSVQTTENDFLCRNDQKTDEEKQHSSS 1675
Query: 808 NDSNLNQGSLTGVPTLY 824
+ GSL+ P L+
Sbjct: 1676 TSKWIRPGSLS--PELF 1690
Score = 37 (18.1 bits), Expect = 2.0e-118, Sum P(8) = 2.0e-118
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 471 KWLATSQAAEDLNSDDELLHETILSPLLPETTIDKVLEKANTDY 514
K ++T A+ ++ SD + T S L + +++ E+ DY
Sbjct: 2038 KSVSTIGASINIKSDIDSSETTSESKTLTASALERDKEEEEEDY 2081
Score = 37 (18.1 bits), Expect = 3.9e-98, Sum P(5) = 3.9e-98
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 18 IDHYMAP--PI----PGYDICYS 34
+DH ++ PI PG++ CYS
Sbjct: 1575 VDHSVSDDSPIFFSDPGFESCYS 1597
>UNIPROTKB|G4NL37 [details] [associations]
symbol:MGG_02986 "DNA polymerase" species:242507
"Magnaporthe oryzae 70-15" [GO:0009405 "pathogenesis" evidence=IMP]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0009405
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
EMBL:CM001237 GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 RefSeq:XP_003720713.1
EnsemblFungi:MGG_02986T0 GeneID:2682539 KEGG:mgr:MGG_02986
Uniprot:G4NL37
Length = 1782
Score = 895 (320.1 bits), Expect = 1.4e-117, Sum P(5) = 1.4e-117
Identities = 173/343 (50%), Positives = 242/343 (70%)
Query: 1112 KDAIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFR 1171
KDA D WG S + V GR ++N+WR MRGE+ L YT+E V +L R+IP ++
Sbjct: 1006 KDA---DRWGFNTTSTIRVTGRHMINIWRAMRGELNLLQYTMENVVWHLLHRRIPHYSWQ 1062
Query: 1172 VLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGS 1231
LT W+ SG + + Y R +L++EI+ + +I+RTSE AR+ G+DFFSV SRGS
Sbjct: 1063 TLTTWYGSGRHGDLDKLLRYYQTRTRLDIEILEENGLISRTSEQARLLGVDFFSVFSRGS 1122
Query: 1232 QYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLY 1291
Q++VES++ R+A +N++ +SP QV Q A+ECLPLVMEP+S FY PV+VLDFQSLY
Sbjct: 1123 QFKVESIMFRIAKPENFMLVSPSRKQVGGQNALECLPLVMEPQSAFYNSPVLVLDFQSLY 1182
Query: 1292 PSMMIAYNLCFCTCLGKILPSK-ENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKV 1350
PS+MIAYN C+ T LG+I+ + N +G + +R +L L++ + I PNGVMY P++
Sbjct: 1183 PSVMIAYNYCYSTFLGRIVDWRGTNKMGFAEYRRRKRLLELLQEHINIAPNGVMYTKPEI 1242
Query: 1351 RKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFS 1410
RK +L ++L EIL TR+MVK +K+ + L ++ N RQLALKL+ANVTYGYT+A FS
Sbjct: 1243 RKSLLAKMLTEILETRVMVKSGMKQ-DKDDKTLQQLLNNRQLALKLLANVTYGYTSASFS 1301
Query: 1411 GRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
GR+PC+E+ADSIVQ GR TLE+AI+F++ +W A+V+YGDTD
Sbjct: 1302 GRLPCSEIADSIVQTGRETLERAIAFIHSVPRWGAEVVYGDTD 1344
Score = 172 (65.6 bits), Expect = 1.4e-117, Sum P(5) = 1.4e-117
Identities = 42/99 (42%), Positives = 59/99 (59%)
Query: 9 NIFSVRIVSIDHYMAPPIPGYDICYSS----LQGGKVNEVPVIRVYGSTPAGQKTCLHIH 64
++F VR+ IDHY A P YD C + Q K +VPVIRV+GST GQK C HIH
Sbjct: 2 DVFKVRLNCIDHYQATPTQ-YDPCLRNDVRHSQLFKEPKVPVIRVFGSTQTGQKVCAHIH 60
Query: 65 RALPYLYVPCADIPVQLRQEDDG-YMHAISLALEKALKV 102
A PYL++ + +L QE+ G + + + L+++ AL V
Sbjct: 61 GAFPYLFI---EYNGKLDQEEVGAFSYRLHLSIDHALAV 96
Score = 142 (55.0 bits), Expect = 1.4e-117, Sum P(5) = 1.4e-117
Identities = 22/45 (48%), Positives = 33/45 (73%)
Query: 125 GAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFRHPVP 169
G + + QP+E+H+ ++LQF+ DYNLYG G++ S +KFR PVP
Sbjct: 153 GVIMKRKFQPYEAHLQYILQFMTDYNLYGCGYIEASSVKFRAPVP 197
Score = 129 (50.5 bits), Expect = 1.4e-117, Sum P(5) = 1.4e-117
Identities = 47/189 (24%), Positives = 87/189 (46%)
Query: 909 EGHIAEPNACADCLQDISQISGPDGRSKPTPLSQIGF---QDPASAGAGEQ---LTLLSI 962
+ H A P + + +SQI G TP ++ GF Q + + ++ +SI
Sbjct: 818 KSHPASPQSTQLARRQLSQIEGA------TPKNKHGFRYSQKQKTTSVQHEVAYMSTMSI 871
Query: 963 EVQAESRGDLRPDPRYDSINVVALAFEND--SDHA-------VEIYVLLYCKSESHQRSL 1013
E+ +RG L PDP D + + +D S+ A ++ V++ + + +
Sbjct: 872 EIHVNTRGKLVPDPEKDEVKCIFWCVRSDDKSNEASSQAPDGLQSGVVVLSEEGTLAERI 931
Query: 1014 VGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHL-GIGLLN 1072
++ + E+ L ++I+ + DPDIL G+++ GGS G+L ERA + L +
Sbjct: 932 KHQIKGELLEETSELDLMVRMVEIVRTHDPDILTGYEVHGGSWGYLIERARCMYDYNLCD 991
Query: 1073 DISRTPLES 1081
+ SR +S
Sbjct: 992 EFSRMKSQS 1000
Score = 43 (20.2 bits), Expect = 1.3e-108, Sum P(5) = 1.3e-108
Identities = 19/76 (25%), Positives = 32/76 (42%)
Query: 881 EEMHQEADEMISTEPTPDLNGVTAIMHNEGHIAEP----NACADCLQDISQISGPDGRSK 936
EE E +E+I+TE D +T + + EP +A L+ + + +
Sbjct: 327 EEFRAEIEELITTERANDDTDITF----DSFVPEPPPLDSAIKTVLESVEDLYPQHLEAS 382
Query: 937 PTPLSQIGFQ-DPASA 951
+S I DPAS+
Sbjct: 383 LGEMSTISVDFDPASS 398
Score = 42 (19.8 bits), Expect = 1.4e-117, Sum P(5) = 1.4e-117
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 246 DDCVGDIVNQ------RLM--MYTSLSQTRSDVKMVQSLVPIW 280
D CV DI+N+ RL L+ +D+K+V S+ +W
Sbjct: 240 DICVQDILNRKDVKERRLHHDFVERLNPLPTDMKLVASMAGLW 282
Score = 42 (19.8 bits), Expect = 4.2e-16, Sum P(3) = 4.2e-16
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 251 DIVNQRLMMYTSLSQTRSDVKMVQSLVPIWEVCSHPIYKLFNIQYIYPLVNFT 303
+I+ R+M+ + + Q + D K +Q L+ ++ + L N+ Y Y +F+
Sbjct: 1253 EILETRVMVKSGMKQDKDD-KTLQQLLNNRQLA---LKLLANVTYGYTSASFS 1301
>ASPGD|ASPL0000070569 [details] [associations]
symbol:uvsI species:162425 "Emericella nidulans"
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISA] [GO:0006281 "DNA repair" evidence=IMP]
[GO:0042276 "error-prone translesion synthesis" evidence=ISA;IMP]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0016035 "zeta DNA polymerase complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0070987 "error-free
translesion synthesis" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 EMBL:BN001303 GO:GO:0003887
EMBL:AACD01000081 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 HOGENOM:HOG000194392
RefSeq:XP_662393.1 ProteinModelPortal:G5EB69
EnsemblFungi:CADANIAT00005633 GeneID:2872590 KEGG:ani:AN4789.2
OMA:INIWRAM Uniprot:G5EB69
Length = 1681
Score = 916 (327.5 bits), Expect = 3.5e-115, Sum P(5) = 3.5e-115
Identities = 174/337 (51%), Positives = 237/337 (70%)
Query: 1118 DEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWF 1177
D+WG H S + + GR ++N+WR MR E+ L YT+E V +L R+IP FR LT W+
Sbjct: 980 DKWGFDHTSSIRITGRHIINIWRAMRSEMNLLQYTMENVVFHLLHRRIPHYSFRDLTAWY 1039
Query: 1178 ASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVES 1237
S R + + Y R ++N+EI+N ++I RTSE AR+ GIDF+SV SRGSQ++VES
Sbjct: 1040 QSDKPRDFMKVINYYTSRVQMNIEILNANELIPRTSEQARLLGIDFYSVFSRGSQFKVES 1099
Query: 1238 MLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIA 1297
++ R+A +N++ +SP QV Q A+ECLPLVMEP+S FY P++VLDFQSLYPS+MIA
Sbjct: 1100 LMFRIAKPENFILVSPSRKQVGQQNALECLPLVMEPQSDFYTSPLIVLDFQSLYPSIMIA 1159
Query: 1298 YNLCFCTCLGKILPSK-ENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLP 1356
YN C+ T LG++ + N +G + +L LKD + I PNG++Y +VRK +L
Sbjct: 1160 YNYCYSTFLGRVQSWRGRNKMGFLDYNRPPRLLELLKDHINIAPNGMIYARSEVRKSLLA 1219
Query: 1357 RLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCA 1416
++L EIL TR+MVK +K + + L R+ N RQLALKLIANVTYGYT+A FSGRMPC+
Sbjct: 1220 KMLTEILETRVMVKTGMK-VDKDDRALQRLLNNRQLALKLIANVTYGYTSASFSGRMPCS 1278
Query: 1417 ELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
E+ADSIVQ GR TLEKAI+F++ E+W A+V+YGDTD
Sbjct: 1279 EIADSIVQSGRETLEKAIAFIHSVERWGAEVVYGDTD 1315
Score = 154 (59.3 bits), Expect = 3.5e-115, Sum P(5) = 3.5e-115
Identities = 41/113 (36%), Positives = 63/113 (55%)
Query: 11 FSVRIVSIDHYMA------PPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIH 64
F VR+ +DHY A PP+P D + + G + +VPVIR++G+T GQK C+H+H
Sbjct: 4 FQVRLNCVDHYQANPSEFDPPLPYRD---GNNEKGYMPKVPVIRIFGTTETGQKICVHVH 60
Query: 65 RALPYLYVPC-ADI-PVQLRQEDDGYMHAISLALEKALKVKGSAGSKRQHVHE 115
A PYLYV D+ P +R ++ L+++ AL V S R++ H+
Sbjct: 61 GAFPYLYVQYDGDLSPDSVRSA----ARSLHLSIDHALAV-----SYRRNAHD 104
Score = 124 (48.7 bits), Expect = 3.5e-115, Sum P(5) = 3.5e-115
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 125 GAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFRHPVPD 170
GAV + +QP+ESH+ ++ Q++ DYNL+G + K KFR P+P+
Sbjct: 152 GAVMKRPIQPYESHLQYVPQWMCDYNLFGCAFMKCGKAKFRSPIPE 197
Score = 113 (44.8 bits), Expect = 3.5e-115, Sum P(5) = 3.5e-115
Identities = 45/167 (26%), Positives = 72/167 (43%)
Query: 925 ISQISGPDGRSKPTPLSQIGF---QDPASAGAGEQ---LTLLSIEVQAESRGDLRPDPRY 978
+SQI GP T ++ GF Q S Q ++ +S+EV +RG L P+P
Sbjct: 806 LSQIEGP------TQKNEHGFKYSQHKKSTSVEHQTQYMSTMSLEVHVNTRGVLLPNPEE 859
Query: 979 DSINVVALAFENDSDHAVEIYVLLYCKSESHQRSLVGIPDCKV-----FVC---SKEIHL 1030
D I ++ + E L + P+ K+ F C S E+ L
Sbjct: 860 DEIAAFFWCVNSEDEPQEEDDSLSVVNMGVVFQGEEEYPESKISKALRFECEHESTELDL 919
Query: 1031 FSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAH-LGIGLLNDISR 1076
+ + I+ DPDI+ G+++ S GF+ ERA L +++SR
Sbjct: 920 INRLVDIVRLHDPDIITGYEVHNSSWGFIIERARKKYDFDLCDELSR 966
Score = 43 (20.2 bits), Expect = 1.9e-106, Sum P(4) = 1.9e-106
Identities = 14/54 (25%), Positives = 21/54 (38%)
Query: 125 GAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFRHPVPDAFFPRKFN 178
G + D+S+ P +SH P V L L +S+ H + P N
Sbjct: 216 GWILDESVLPKQSHCPLEADVCVQDIL---NRLEISERSIHHDFREFLNPLTSN 266
Score = 43 (20.2 bits), Expect = 5.7e-12, Sum P(4) = 5.7e-12
Identities = 11/53 (20%), Positives = 28/53 (52%)
Query: 386 YDYKDPEYLTCLKEGKI-LSALAPQGLVHQEKISLMPSKGKDTCPELPFGGEI 437
YD + P C+++ + L L + +++++ + + +C ++PFG E+
Sbjct: 1586 YDAEIPVCSDCVRQPHVSLLELVSRQRHAEQRVATLERICR-SCMDVPFGDEV 1637
Score = 43 (20.2 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 27/114 (23%), Positives = 44/114 (38%)
Query: 1292 PSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKD------ELLIPPNGVMY 1345
P M YNL C + G + FR + DL D + IPP ++
Sbjct: 170 PQWMCDYNLFGCAFM---------KCGKAKFRSPIPEYLDLPDLSHRWHDRSIPPGWIL- 219
Query: 1346 VPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIAN 1399
+ VLP+ L + V+ + +L S++ +H F R+ L +N
Sbjct: 220 -----DESVLPKQSHCPLEADVCVQDILNRLEISERSIHHDF--REFLNPLTSN 266
Score = 42 (19.8 bits), Expect = 3.5e-115, Sum P(5) = 3.5e-115
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 246 DDCVGDIVNQRLMMYTS--------LSQTRSDVKMVQSLVPIWE 281
D CV DI+N+ + S L+ S+ K+V S+ +WE
Sbjct: 235 DVCVQDILNRLEISERSIHHDFREFLNPLTSNEKLVPSMAGLWE 278
Score = 40 (19.1 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 355 TVSSFGNDFEVLKSVACATDEENLIKLGPANYDYKDPEYLTCL 397
+V S G+ F+V + EN I + P+ L CL
Sbjct: 1087 SVFSRGSQFKVESLMFRIAKPENFILVSPSRKQVGQQNALECL 1129
Score = 38 (18.4 bits), Expect = 1.8e-11, Sum P(4) = 1.8e-11
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 1205 QLDMINRTSELARVFGIDFFS 1225
+LD+INR ++ R+ D +
Sbjct: 916 ELDLINRLVDIVRLHDPDIIT 936
Score = 37 (18.1 bits), Expect = 2.2e-11, Sum P(4) = 2.2e-11
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 1342 GVMYVPPKVRKGVLPRLLEE 1361
G+ Y+P G LP +L E
Sbjct: 716 GIRYLPDFDPSGRLPAMLAE 735
>UNIPROTKB|A8IZI8 [details] [associations]
symbol:POLZ1 "DNA polymerase" species:3055 "Chlamydomonas
reinhardtii" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0016035 "zeta DNA polymerase
complex" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 GO:GO:0016035
EMBL:DS496129 RefSeq:XP_001694423.1 STRING:A8IZI8
EnsemblPlants:EDP02418 GeneID:5720008 KEGG:cre:CHLREDRAFT_117843
ProtClustDB:CLSN2703070 BioCyc:CHLAMY:CHLREDRAFT_117843-MONOMER
Uniprot:A8IZI8
Length = 729
Score = 1028 (366.9 bits), Expect = 8.0e-115, Sum P(2) = 8.0e-115
Identities = 197/347 (56%), Positives = 254/347 (73%)
Query: 1118 DEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWF 1177
DEWG HASG HV GR++LN+WR++RGE+KL YT E+ A VL ++P + + L WF
Sbjct: 66 DEWGALHASGFHVTGRVLLNLWRVLRGELKLGSYTFESCAAAVLGLRVPRVREQQLALWF 125
Query: 1178 ASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVES 1237
A+GP R+R + ++ R +L L + QLD++ RT+E+AR FGIDFFSVLSRGSQYRVES
Sbjct: 126 AAGPSAGRWRTLSWLCRRCRLQLAMAEQLDLVGRTAEMARTFGIDFFSVLSRGSQYRVES 185
Query: 1238 MLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIA 1297
+L+RLAHT NY+ +P QV QPAME LPLVMEPES YA PVVVLDFQSLYPS +IA
Sbjct: 186 LLVRLAHTNNYIMPTPSREQVGGQPAMEALPLVMEPESRMYASPVVVLDFQSLYPSQVIA 245
Query: 1298 YNLCFCTCLGKILPSKEN----TLGVSSFR-PDLHVLRDLKDELLIPPNGVMYVPPKVRK 1352
YNLC+ TC+G+ + ++ LGV+ + P ++L+I PNGV YV P+VR
Sbjct: 246 YNLCYSTCVGRPMHARAGGTPVRLGVTQYSYPAPAAGTATPEDLVISPNGVAYVSPQVRP 305
Query: 1353 GVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGR 1412
GVLPR+L EIL TR+M+K A+KK+ P ++L R+ NARQ LK+IANV+YGYTAAGFSGR
Sbjct: 306 GVLPRMLREILDTRVMIKGAMKKVPPEDKVLLRVLNARQFGLKMIANVSYGYTAAGFSGR 365
Query: 1413 MPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI 1459
MP AELAD+IVQ GR TLE AI+ V + +W+A+V+YGDTD V +
Sbjct: 366 MPFAELADAIVQSGRQTLENAIAMVESHPEWRARVVYGDTDSMFVLL 412
Score = 127 (49.8 bits), Expect = 8.0e-115, Sum P(2) = 8.0e-115
Identities = 29/59 (49%), Positives = 35/59 (59%)
Query: 1027 EIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIG--LLNDISRTPLESKI 1083
E L F L S DPD++ GWD+Q SLG+LAERAA LG+ LL RTP S +
Sbjct: 2 EPSLLRAFAAALSSLDPDVVCGWDVQRHSLGYLAERAAALGLAPPLLRAAGRTPGTSSV 60
>UNIPROTKB|Q8X1U8 [details] [associations]
symbol:UPR1 "DNA polymerase" species:5141 "Neurospora
crassa" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0016035 "zeta DNA polymerase
complex" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 GO:GO:0016035 HOGENOM:HOG000194392
OrthoDB:EOG4FN7RT EMBL:AB077040 ProteinModelPortal:Q8X1U8
STRING:Q8X1U8 Uniprot:Q8X1U8
Length = 1926
Score = 893 (319.4 bits), Expect = 1.2e-112, Sum P(7) = 1.2e-112
Identities = 173/351 (49%), Positives = 245/351 (69%)
Query: 1110 LAKDAIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIP 1169
+ KDA D WG S + + GR ++N+WR MRGE+ L YT+E V +L R+IP
Sbjct: 1066 IGKDA---DRWGFNTTSSIRITGRHMINIWRAMRGELNLLQYTMENVVWHLLHRRIPHYS 1122
Query: 1170 FRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSR 1229
++ L+ W+ S + + + Y + R +L++EI+ + ++I RTSE AR+ G+DFFSV SR
Sbjct: 1123 WKTLSDWYLSDRPKDLDKVLRYYLTRTRLDIEILEKNELIPRTSEQARLLGVDFFSVFSR 1182
Query: 1230 GSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQS 1289
GSQ++VES++ R+A +N+L SP QV +Q A+ECLPLVMEP+S FY+ P++VLDFQS
Sbjct: 1183 GSQFKVESIMFRIAKPENFLLPSPSRKQVGAQNALECLPLVMEPQSAFYSSPLLVLDFQS 1242
Query: 1290 LYPSMMIAYNLCFCTCLGKILPSK-ENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPP 1348
LYPS+MIAYN C+ T LG+I+ + N +G ++ +L LKD + I PNG+MY P
Sbjct: 1243 LYPSVMIAYNYCYSTFLGRIVSWRGRNKMGFMDYKRQEGLLSLLKDYINIAPNGMMYTKP 1302
Query: 1349 KVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAG 1408
+RK +L ++L EIL TRIMVK +K+ + + ++ N RQLALKL+ANVTYGYT+A
Sbjct: 1303 HIRKSLLAKMLTEILETRIMVKSGMKQ-DKDDRAIQQLLNNRQLALKLLANVTYGYTSAS 1361
Query: 1409 FSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI 1459
FSGRMPC+E+ADSIVQ GR TLE+AI+F++ +KW A V+YGDTD V +
Sbjct: 1362 FSGRMPCSEIADSIVQTGRETLERAIAFIHSVQKWDADVVYGDTDSLFVSL 1412
Score = 150 (57.9 bits), Expect = 1.2e-112, Sum P(7) = 1.2e-112
Identities = 37/89 (41%), Positives = 48/89 (53%)
Query: 13 VRIVSIDHYMAPPI---PGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPY 69
+R+ IDHY A P P +D + K +VPVIRV+GST GQK C HIH A PY
Sbjct: 6 LRLNCIDHYQATPTRYDPQFDQDVRFSRSRKAAKVPVIRVFGSTDKGQKVCAHIHGAFPY 65
Query: 70 LYVPCADIPVQLRQEDDGYMHAISLALEK 98
LYV + L D HA++++ K
Sbjct: 66 LYV---EYDGNLEPNKD---HALAISYRK 88
Score = 130 (50.8 bits), Expect = 1.2e-112, Sum P(7) = 1.2e-112
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 118 LVRAKKGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFRHPVP 169
LV + G + + QP+E+H+ +LLQF+ DYNLYG +L + FR PVP
Sbjct: 133 LVDLLQQGVIMSRKFQPYEAHLQYLLQFMADYNLYGCNYLDAAMATFRAPVP 184
Score = 118 (46.6 bits), Expect = 1.2e-112, Sum P(7) = 1.2e-112
Identities = 54/210 (25%), Positives = 89/210 (42%)
Query: 894 EPTPDLNGVTAIMHNEGHIAEPNACADCLQDI----SQISGPDGRSKPTPLSQIGFQDPA 949
+P P V+ +E + P C I SQI+G TP ++ GF+ P
Sbjct: 862 DPPPSFKEVSNWWTDEQNDRNPKRCHSTPLRIKTYRSQIAGV------TPKNKHGFEHPE 915
Query: 950 SAGA------GEQLTLLSIEVQAESRGDLRPDPRYDSINVV---------AL-AFENDSD 993
+ + ++ +S+EV +RG L PDP D + V AL + D
Sbjct: 916 KTKSESKQDQAQYMSAMSLEVHVNTRGKLVPDPEEDEVQCVFWYLRSEVNALRGTQTPDD 975
Query: 994 HAVEIYVLLYCKSESHQ-RSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQ 1052
A I V + + R +P V + E+ + ++I+ + DPDI G+++
Sbjct: 976 TARGIIVFSEDSLLADRIRKHTSVP---VVQETTELDMMVRMVEIVRNHDPDIFTGYEVH 1032
Query: 1053 GGSLGFLAERAA-HLGIGLLNDISRTPLES 1081
G S G+L ERA + L ++ SR +S
Sbjct: 1033 GSSWGYLIERARIKYELDLCDEFSRMKSQS 1062
Score = 47 (21.6 bits), Expect = 2.2e-104, Sum P(6) = 2.2e-104
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 961 SIEVQAESRGDLRPDPRYDSINVVALAFENDSDHAVEIYV 1000
+I+ ES DL PD ++ + A F ++ H + I V
Sbjct: 349 TIKTTLESVEDLYPDNLSQALQIEAQFFHMNAHHLISIDV 388
Score = 46 (21.3 bits), Expect = 1.2e-112, Sum P(7) = 1.2e-112
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 710 RVKRVNVTGEQKNALSMCEKQLEFD---TLQNDECEKCPLKGGTGISTVCKENMESPS-P 765
R + +G QKN ++ KQL FD T+ + P G T K N++S S P
Sbjct: 685 RARLSQKSGSQKNEGNVTRKQLAFDPQPTILGPSAQAKP--GQT------KSNLKSSSRP 736
Query: 766 FDT 768
D+
Sbjct: 737 LDS 739
Score = 42 (19.8 bits), Expect = 8.3e-12, Sum P(4) = 8.3e-12
Identities = 12/53 (22%), Positives = 28/53 (52%)
Query: 251 DIVNQRLMMYTSLSQTRSDVKMVQSLVPIWEVCSHPIYKLFNIQYIYPLVNFT 303
+I+ R+M+ + + Q + D + +Q L+ ++ + L N+ Y Y +F+
Sbjct: 1315 EILETRIMVKSGMKQDKDD-RAIQQLLNNRQLA---LKLLANVTYGYTSASFS 1363
Score = 42 (19.8 bits), Expect = 8.3e-12, Sum P(4) = 8.3e-12
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 876 IRPVLEEMHQEADEMISTEPTPDLNGVTAIMHNEGHIAEPNACADCLQDISQISGPDGRS 935
+R V E+ ++AD+ S P L G + +G A A A ++ + G DG
Sbjct: 1644 LRKVAED--EDADDDASKGPLLGLLGASP--SKKGTAAAEAAAAAAELEMEDMLGEDGEL 1699
Query: 936 KP 937
P
Sbjct: 1700 LP 1701
Score = 40 (19.1 bits), Expect = 1.2e-112, Sum P(7) = 1.2e-112
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 514 YERESQKECQDILDSIEDEVNVDGLEERNSSTVDPSNHPET 554
+E E + Q ++ +++ N DG +E S V P ET
Sbjct: 311 HEAEYRAGIQQLV--AQEQNNTDGRQETFSRFVQPVPFEET 349
Score = 38 (18.4 bits), Expect = 1.2e-112, Sum P(7) = 1.2e-112
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 246 DDCVGDIVN-----QRLMMYTSLSQTR---SDVKMVQSLVPIW 280
D CV DI+N +R + + + + + S K+V S+ +W
Sbjct: 226 DICVEDILNRKQVKERRLHHDFIEKEQPVSSQEKLVHSMAGLW 268
>DICTYBASE|DDB_G0271608 [details] [associations]
symbol:rev3 "DNA polymerase zeta catalytic subunit"
species:44689 "Dictyostelium discoideum" [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016035 "zeta
DNA polymerase complex" evidence=ISS;IBA] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0271608 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GenomeReviews:CM000151_GR EMBL:AAFI02000006 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 KO:K02350
GO:GO:0016035 RefSeq:XP_645553.1 ProteinModelPortal:Q55AZ3
EnsemblProtists:DDB0232271 GeneID:8618010 KEGG:ddi:DDB_G0271608
InParanoid:Q55AZ3 OMA:TTCELEV Uniprot:Q55AZ3
Length = 2701
Score = 657 (236.3 bits), Expect = 7.7e-112, Sum P(6) = 7.7e-112
Identities = 153/411 (37%), Positives = 236/411 (57%)
Query: 924 DISQISGPDGRSKPTPLSQI-GFQDPA-SAGAGEQLTLLSIEVQAESRGDLRPDPRYDSI 981
+ SQIS + P+P+ + F + + LT+LS+E+ SR +L P+P +DSI
Sbjct: 1685 EFSQIS----QHTPSPIKYVRDFSKKRLQSNQNQNLTILSVEIHCNSRDNLNPNPEFDSI 1740
Query: 982 NVVAL------AFENDSDHAVEIYVLLYCKSESH---QRSLVGIPDCKVFVCSKEIHLFS 1032
+ + E + D +I +L ++ H + + G+ +C + V E LF
Sbjct: 1741 QSIIYCIRDEQSIEIEGDQYQDIKGILMV-NDGHYENENNSYGL-NCFIKVLHNEFELFK 1798
Query: 1033 HFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESKIAAGDSEISE 1092
F++++ S+D DIL+G+++Q S+G+L ERA LG+ L ++ISR + + G + +
Sbjct: 1799 SFVELIRSYDIDILVGFEVQMSSIGYLIERANQLGLSLCDEISRV-ISNTGLTGQNTTTT 1857
Query: 1093 RGITDNMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYT 1152
+G A + +KD D++ H +G+ + GRIVLN+WRL+R E+ L+ YT
Sbjct: 1858 KG------ANRTKRTNYFSKD---RDQYSFEHFTGMKIIGRIVLNLWRLLRHEITLDNYT 1908
Query: 1153 VEAVAETVLRRKIPSIPFRVLTKWFASGPGRA--------------RYRCVEYVVGRAKL 1198
+ + VL ++ F+ LT W+ G G + R+R +EY + + +
Sbjct: 1909 YQNLCFHVLNKRQEEYSFKKLTNWYGGGGGSSNTFQQHQHQHQYQQRWRTLEYYLKKCEN 1968
Query: 1199 NLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNHQV 1258
N ++ D+I RTSE +RV+GIDF SVLSRGSQY VESMLLRL +N++ +SP +V
Sbjct: 1969 NFNLIYAFDLIQRTSEFSRVYGIDFNSVLSRGSQYTVESMLLRLTKPENFILLSPSREEV 2028
Query: 1259 ASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKI 1309
SQP E +PLVM+P + Y PVVVLDFQSLYPS+MIAYN C+ TCLGK+
Sbjct: 2029 LSQPMPESIPLVMDPITRLYNSPVVVLDFQSLYPSIMIAYNYCYSTCLGKV 2079
Score = 355 (130.0 bits), Expect = 7.7e-112, Sum P(6) = 7.7e-112
Identities = 71/143 (49%), Positives = 95/143 (66%)
Query: 1318 GVSSFRPDLHVLRDLKDELL-IPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKL 1376
G S L +L + E L I PN V++ +R G+ P+LL+E+L TRIMVK+A+KK+
Sbjct: 2158 GASWLENKLGLLESISIEHLNISPNNVIFTDKSIRTGLFPKLLQEVLDTRIMVKRAMKKI 2217
Query: 1377 APSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISF 1436
+ + I NARQL LK++ANV +GYTAA +SGRMPC E+ DSIVQ R TLE AI
Sbjct: 2218 DKGDKKMFNILNARQLGLKMMANVAFGYTAATYSGRMPCIEIGDSIVQTARETLEAAIKI 2277
Query: 1437 VNENEKWKAKVIYGDTDRYTVCI 1459
V +++W AKV+YGDTD V +
Sbjct: 2278 VESSKEWNAKVVYGDTDSLFVLL 2300
Score = 185 (70.2 bits), Expect = 7.7e-112, Sum P(6) = 7.7e-112
Identities = 33/66 (50%), Positives = 44/66 (66%)
Query: 11 FSVRIVSIDHYMAPPIPGYDICYSSLQGGKVN----EVPVIRVYGSTPAGQKTCLHIHRA 66
FSVRIV ID+Y P+ G D+ S L N EVP++R++GSTPAGQK CLH+H+
Sbjct: 18 FSVRIVDIDYYQTRPVQGLDVMVSPLSSSNNNKTIEEVPIVRIFGSTPAGQKCCLHLHQL 77
Query: 67 LPYLYV 72
PY ++
Sbjct: 78 FPYFFI 83
Score = 112 (44.5 bits), Expect = 7.7e-112, Sum P(6) = 7.7e-112
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 123 KGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFRHPVPD 170
+ G + + + ESHIPF+LQ +DYNL GM ++ + FR P+P+
Sbjct: 188 RSGMIMSRCFRVFESHIPFILQVFLDYNLSGMSNIEFTNAYFRLPLPE 235
Score = 56 (24.8 bits), Expect = 7.7e-112, Sum P(6) = 7.7e-112
Identities = 24/77 (31%), Positives = 38/77 (49%)
Query: 508 EKANTDYERESQKECQDILDS--------IEDEVNVD--GLEERNSSTVDPS----NHPE 553
E+ N E +SQ+E DI+ + + +E + D L + + PS + E
Sbjct: 645 EEFNNQ-EFQSQREASDIIGTQSKLIDMFLNEEKDADLWALTDSDDEEQKPSPKKRSFTE 703
Query: 554 T--SSHKKIPQIDGSSD 568
T SS+ +IPQIDG +D
Sbjct: 704 TLQSSNNEIPQIDGPTD 720
Score = 49 (22.3 bits), Expect = 7.7e-112, Sum P(6) = 7.7e-112
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 805 PNNNDSNLNQGSLTGVPTLYLNDGSCLYML 834
P NN++N NQ +++ + TL + S L +L
Sbjct: 1590 PFNNNNNNNQNNISNIFTLAIPPPSKLQLL 1619
Score = 49 (22.3 bits), Expect = 4.3e-15, Sum P(4) = 4.3e-15
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 799 ELQSDHPNNNDSNLNQGSLTGVPTLYLNDGSCL 831
++Q ++ NNN++N N T + Y SCL
Sbjct: 2562 KIQYENNNNNNNNNNDHQNTTIDQFY-KTSSCL 2593
Score = 42 (19.8 bits), Expect = 3.6e-110, Sum P(5) = 3.6e-110
Identities = 13/58 (22%), Positives = 28/58 (48%)
Query: 762 SPSPFDTKKEDASVSVGDWKADNCKESKFDATSVEPRELQSDHPNNNDSNLNQGSLTG 819
S + FD + D+++ + D DN + + + +++ NNN++N N + G
Sbjct: 489 SNTSFD--QLDSNIKILDDYGDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNG 544
Score = 41 (19.5 bits), Expect = 4.9e-46, Sum P(5) = 4.9e-46
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 802 SDHPNNNDSNLNQG 815
+++ NNN++N NQG
Sbjct: 2126 NNNNNNNNNNNNQG 2139
Score = 40 (19.1 bits), Expect = 2.0e-103, Sum P(4) = 2.0e-103
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 795 VEPRELQSDHPNNNDSNLNQGS 816
V L +H NNN++N N +
Sbjct: 103 VSTLNLALNHSNNNNNNNNNNN 124
Score = 39 (18.8 bits), Expect = 8.4e-111, Sum P(6) = 8.4e-111
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 806 NNNDSNLNQGSLTGVP 821
NNN+ N N+ S+ P
Sbjct: 1176 NNNNKNNNKNSIINSP 1191
Score = 38 (18.4 bits), Expect = 1.1e-110, Sum P(6) = 1.1e-110
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 807 NNDSNLNQGSLTGVPTLYLNDGS 829
NN+ N N + G+ ++ LN +
Sbjct: 815 NNNKNNNSNNNKGLKSILLNSSN 837
Score = 38 (18.4 bits), Expect = 1.1e-110, Sum P(6) = 1.1e-110
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 777 VGDWKADNCKESKFDATSVEPRELQSDHPNNNDSNLNQGS 816
+GD N ++ D + +++ NNN++N N +
Sbjct: 1132 IGDSPIKNNEKQLEDKKKNDNNNNNNNNNNNNNNNNNNNN 1171
Score = 37 (18.1 bits), Expect = 1.4e-110, Sum P(6) = 1.4e-110
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 802 SDHPNNNDSNLNQGSL 817
+++ NNN+SN N ++
Sbjct: 770 NNNNNNNNSNSNNNNI 785
Score = 37 (18.1 bits), Expect = 1.2e-109, Sum P(5) = 1.2e-109
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 784 NCKESKFDATSVEPRELQSDHPNNNDSNLNQGS 816
N ES +E R+ D NN+ N N +
Sbjct: 255 NISESSSSDDCIENRKWFKDSLINNNKNNNNNN 287
Score = 37 (18.1 bits), Expect = 4.3e-44, Sum P(5) = 4.3e-44
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 355 TVSSFGNDFEVLKSVACATDEENLIKLGPA 384
+V S G+ + V + T EN I L P+
Sbjct: 1995 SVLSRGSQYTVESMLLRLTKPENFILLSPS 2024
Score = 37 (18.1 bits), Expect = 5.5e-13, Sum P(5) = 5.5e-13
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 1334 DELLIPPNGVMYVP 1347
D++ IP V YVP
Sbjct: 851 DDITIPETQVEYVP 864
>UNIPROTKB|F1P7E8 [details] [associations]
symbol:REV3L "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00550000074640 EMBL:AAEX03008609 EMBL:AAEX03008610
Ensembl:ENSCAFT00000006343 Uniprot:F1P7E8
Length = 3058
Score = 904 (323.3 bits), Expect = 7.8e-110, Sum P(7) = 7.8e-110
Identities = 180/347 (51%), Positives = 244/347 (70%)
Query: 1118 DEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWF 1177
D++G S +++ GRI LN+WR+MR EV L YT E V+ VL ++ P FRVL+ WF
Sbjct: 2374 DDYGSETMSEINIVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQRFPLFTFRVLSDWF 2433
Query: 1178 ASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVES 1237
+ R++ V++ + R + NL+++ QLD+I +TSE+AR+FGI F VL+RGSQYRVES
Sbjct: 2434 DNKTDLYRWKMVDHYISRVRGNLQMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVES 2493
Query: 1238 MLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIA 1297
M+LR+A NY+ ++P Q + A +C+PL+MEPES FY++ V+VLDFQSLYPS++IA
Sbjct: 2494 MMLRIAKPMNYIPVTPSVQQRSQMRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIA 2553
Query: 1298 YNLCFCTCLGKI--LPS-KENTLGVSSFR--PDLHVLRDLKDELLIPPNGVMYVPPKVRK 1352
YN CF TCLG + L E G +S R PDL L ++ ++ + PNG+ +V P VRK
Sbjct: 2554 YNYCFSTCLGHVENLGKYDEFKFGCTSLRVPPDL--LYQIRHDITVSPNGIAFVKPSVRK 2611
Query: 1353 GVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGR 1412
GVLPR+LEEIL TR+MVKQ++K + L R+ +ARQL LKLIANVT+GYTAA FSGR
Sbjct: 2612 GVLPRMLEEILKTRLMVKQSMKAYK-QDRALSRMLDARQLGLKLIANVTFGYTAANFSGR 2670
Query: 1413 MPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI 1459
MPC E+ DSIV R TLE+AI VN+ +KW A+V+YGDTD V +
Sbjct: 2671 MPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLL 2717
Score = 174 (66.3 bits), Expect = 7.8e-110, Sum P(7) = 7.8e-110
Identities = 56/177 (31%), Positives = 87/177 (49%)
Query: 923 QDISQISGPD-GRSKPTPLSQIGFQDPASAGAGEQLTLLSIEVQAESRGDLRPDPRYDSI 981
++ SQI GP + +S Q+ + + LTL+S+E+ A +R DL PDP +D I
Sbjct: 2190 KETSQIDGPSLNNTYGFKVSVQNLQEAKALHEIQNLTLISVELHARTRRDLEPDPEFDPI 2249
Query: 982 NVVALAFENDS-----DHAVEIYVLLYCKSES-------HQRSLV---GIPDCKVFVCSK 1026
+ +D+ D V++ K ++ +Q L+ GI +V
Sbjct: 2250 CALFYCISSDTPLPDTDKTELTGVIVIDKDKTVSSQDIRYQTPLLIRSGITGLEVTYAPD 2309
Query: 1027 EIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESKI 1083
E LF I+ +DPDIL+G++IQ S G+L +RAA L + L ISR P + KI
Sbjct: 2310 EKALFQEIADIIKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLGQMISRVP-DDKI 2365
Score = 145 (56.1 bits), Expect = 7.8e-110, Sum P(7) = 7.8e-110
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 116 CSLVRAKKGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFR 165
C L+++ GA+ +K QPHE+HIP+LLQ +DYNLYGM ++L+ +KFR
Sbjct: 59 CELLQS---GAIMNKFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFR 105
Score = 50 (22.7 bits), Expect = 7.8e-110, Sum P(7) = 7.8e-110
Identities = 47/238 (19%), Positives = 91/238 (38%)
Query: 599 VPQDTW-TNAASKCNVKKKLWGSLPFSVSEQFNKDIET-VSCNISSLCVTEVKDHGATGS 656
V W +N C K+ L + S +E+ + E + + +SL + + G+
Sbjct: 390 VMSQRWDSNIEEPCAKKRSLCRNTRRSSTEEDDSSSEEEMEWSNNSLLLANLSIPQLDGT 449
Query: 657 LVGNELGKSFDALEREDADAHDIKEATAVTGGSVRDLMRRKRSYRESSECEPPRVKRVNV 716
N S + L E++ H AT+ SV+ + K +++ EPP ++
Sbjct: 450 ADEN----SDNPLNNENSRTHSSVIATSKL--SVKPSIFHK----DAATLEPPSSAKITF 499
Query: 717 TGEQKNALS---MCEKQLEFDTLQNDECEKCPLKGGTGISTVCKENMESPSPFDTKKEDA 773
+ +ALS + ++ L D Q + EKC + +M+ P +
Sbjct: 500 QCKHTSALSSHVLNKEDLIEDLPQPNNIEKCIDHSVASFTNESTYSMKYPGSLSSSVHSE 559
Query: 774 SVSVGDWKAD-----NCKESKFDATSVEPRELQSDHPNNNDSNLNQGSLTGVPTLYLN 826
+ K D +C+ S FD P + P+ +N+ + P +++N
Sbjct: 560 NSHKESSKKDILPVSSCESSIFDYEEDIP-SVPRQVPSRKYTNIRKID-KDTPFIHMN 615
Score = 48 (22.0 bits), Expect = 7.8e-110, Sum P(7) = 7.8e-110
Identities = 20/89 (22%), Positives = 35/89 (39%)
Query: 485 DDELLHETILSPLLPETTIDKVLEKANTDYERESQKECQ----DILDSI-EDEVNVDGLE 539
+DE+ IL + P++T + ++ D E Q L +I EDE
Sbjct: 138 EDEIPSSLILEGVEPQSTCELEVDAVAADILNRLDIEAQIGGNPGLQAIWEDEKQ----R 193
Query: 540 ERNSSTVDPSNHPETSSHKKIPQIDGSSD 568
RN + N PE+ + +P + +
Sbjct: 194 RRNRNETSQINQPESQDRRFVPATESEKN 222
Score = 48 (22.0 bits), Expect = 1.7e-108, Sum P(7) = 1.7e-108
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 539 EERNSSTVDP---SNHPETSSHKKIPQIDGSSDD 569
EE +SS+ + SN+ ++ IPQ+DG++D+
Sbjct: 419 EEDDSSSEEEMEWSNNSLLLANLSIPQLDGTADE 452
Score = 47 (21.6 bits), Expect = 7.8e-110, Sum P(7) = 7.8e-110
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 92 ISLALEKALKVK-GSAGSKRQHVHECSLV 119
++ ++++AL V G+ S QHV + SLV
Sbjct: 1 MAFSIDRALNVALGNPSSTAQHVFKVSLV 29
Score = 46 (21.3 bits), Expect = 3.3e-109, Sum P(7) = 3.3e-109
Identities = 20/91 (21%), Positives = 36/91 (39%)
Query: 754 TVCKENMESPSPFD--TKKEDASVSVGDWKADNCKESKFDATSVEPRELQSDHPNNNDSN 811
++C+ S + D + +E+ S N + D T+ E SD+P NN+++
Sbjct: 408 SLCRNTRRSSTEEDDSSSEEEMEWSNNSLLLANLSIPQLDGTADE----NSDNPLNNENS 463
Query: 812 LNQGSLTGVPTLYLNDGSCLYMLRPPFSPPS 842
S+ L + S + PPS
Sbjct: 464 RTHSSVIATSKLSVKP-SIFHKDAATLEPPS 493
Score = 45 (20.9 bits), Expect = 7.8e-110, Sum P(7) = 7.8e-110
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 832 YMLRPPFSPPSVDSVHKWLL-HD 853
++L+P SPPS + + LL HD
Sbjct: 1800 HILKPLMSPPSREEIMATLLDHD 1822
Score = 43 (20.2 bits), Expect = 1.3e-109, Sum P(7) = 1.3e-109
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 847 HKWLLHDDKGASGDMDKASVEHSSLKGSDIRPVLEE 882
+++L HD++ D AS S ++ S + P L E
Sbjct: 1618 NEFLSHDNQKCDEDKHHASDSTSWIRSSTLSPELFE 1653
Score = 41 (19.5 bits), Expect = 4.2e-109, Sum P(7) = 4.2e-109
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 512 TDYERESQKECQDILDSIEDEVNVDGLEERNSSTVDPSNHPETSSHKKI 560
T+ E+ QK Q+IL + V + G + + + + S E + H ++
Sbjct: 217 TESEKNFQKRLQEILKQNDFSVTLSGSVDYSDGSQEFS--AELTLHSEV 263
Score = 37 (18.1 bits), Expect = 1.7e-108, Sum P(7) = 1.7e-108
Identities = 32/142 (22%), Positives = 57/142 (40%)
Query: 704 SECEPPRVKRVNVTGEQKNALSMCEKQLEF--DTLQNDECEKCPLKGGTGISTVCKENME 761
S+C+ V + GE ++ L++ ++ L+ QN + PL + ++E
Sbjct: 1431 SQCKSRNVSTPSAFGEGQSGLAVLKELLQKRQQKAQNANIMQDPLSNKHQPNKNISGSLE 1490
Query: 762 SPSPFDTKKEDASVSVGDWKADNCKESKFDATSVEPRELQSDHPNNNDSNLNQGSLTGVP 821
T K SV+ K + +K P+ ++ D N +S SL+
Sbjct: 1491 QNK---TVKRTRSVT-SSRKPRTPRSTK--PKEKIPKLIKVDSLNLQNSVQLDNSLSDDS 1544
Query: 822 TLYLND-G--SCLYMLRPPFSP 840
++ +D G SC Y L SP
Sbjct: 1545 PIFFSDPGFESC-YSLEDSLSP 1565
>FB|FBgn0002891 [details] [associations]
symbol:mus205 "mutagen-sensitive 205" species:7227
"Drosophila melanogaster" [GO:0016035 "zeta DNA polymerase complex"
evidence=ISS;IBA;NAS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS;IDA;NAS] [GO:0006260 "DNA replication"
evidence=IEA;NAS] [GO:0019985 "translesion synthesis"
evidence=IBA;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IDA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0005634 "nucleus" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 EMBL:AE013599 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0000724 SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 GeneTree:ENSGT00550000074640
FlyBase:FBgn0002891 EMBL:AF298216 RefSeq:NP_524881.2
UniGene:Dm.10622 SMR:Q9GSR1 MINT:MINT-864058 STRING:Q9GSR1
EnsemblMetazoa:FBtr0088831 GeneID:47186 KEGG:dme:Dmel_CG1925
UCSC:CG1925-RA CTD:47186 InParanoid:Q9GSR1 OMA:IPPLNRC
GenomeRNAi:47186 NextBio:838931 Uniprot:Q9GSR1
Length = 2130
Score = 816 (292.3 bits), Expect = 3.5e-108, Sum P(5) = 3.5e-108
Identities = 170/333 (51%), Positives = 226/333 (67%)
Query: 1132 GRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEY 1191
GRI+L+VWRLMR E+ L YT E V +L ++ P + LT+WF S P R+ +EY
Sbjct: 1454 GRILLDVWRLMRSEIALTSYTFENVMYHILHKRCPWHTAKSLTEWFGS-PC-TRWIVMEY 1511
Query: 1192 VVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAI 1251
+ R + L +++QLD++ RTSE+A++ GI F+ VLSRGSQ+RVESM+LR+A +N + +
Sbjct: 1512 YLERVRGTLTLLDQLDLLGRTSEMAKLIGIQFYEVLSRGSQFRVESMMLRIAKPKNLVPL 1571
Query: 1252 SPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILP 1311
SP A A E L L+MEP+S FYADP++VLDFQSLYPSM+IAYN CF TCLG++
Sbjct: 1572 SPSVQARAHMRAPEYLALIMEPQSRFYADPLIVLDFQSLYPSMIIAYNYCFSTCLGRVEH 1631
Query: 1312 ---SKENTLGVSSFRPDLHVLRDL--KDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTR 1366
S G S R +L+ L D + + P GV++V +VR+G+LPR+L EIL TR
Sbjct: 1632 LGGSSPFEFGASQLRVSRQMLQKLLEHDLVTVSPCGVVFVKREVREGILPRMLTEILDTR 1691
Query: 1367 IMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCG 1426
MVKQ++K L L RI ++RQL LKL+ANVTYGYTAA FSGRMP E+ DS+V G
Sbjct: 1692 QMVKQSMK-LHKDSSALQRILHSRQLGLKLMANVTYGYTAANFSGRMPSVEVGDSVVSKG 1750
Query: 1427 RSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI 1459
R TLE+AI V NE+WK +V+YGDTD V +
Sbjct: 1751 RETLERAIKLVENNEEWKVRVVYGDTDSMFVLV 1783
Score = 223 (83.6 bits), Expect = 3.5e-108, Sum P(5) = 3.5e-108
Identities = 46/112 (41%), Positives = 66/112 (58%)
Query: 10 IFSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPY 69
++SVR+V D YM P G D CYS L+G ++ VPVIRV+G GQKTC+H+H PY
Sbjct: 11 VYSVRLVIADFYMEKPQFGMDPCYSELRGKEIKRVPVIRVFGGNSRGQKTCMHVHGVFPY 70
Query: 70 LYVPCADIPVQLRQEDDGYMHAISLALEKALKVK-GSAGSKRQHVHECSLVR 120
LY+P D + G + +++ L+KA+ + G S QHV + LV+
Sbjct: 71 LYIPY-D-KKDFESLERGILQ-MAMHLDKAINISLGQGSSNAQHVFKIQLVK 119
Score = 155 (59.6 bits), Expect = 4.3e-101, Sum P(5) = 4.3e-101
Identities = 37/108 (34%), Positives = 53/108 (49%)
Query: 77 IPVQLRQEDDGYMHAISLALEKALKVKGSAGSKRQ----HVHECSLVRAK----KGGAVF 128
I + L Q H + L K + G + Q ++ VR + GA+
Sbjct: 98 INISLGQGSSNAQHVFKIQLVKGIPFYGYHRVEHQFLKIYMFNPRFVRRAANLLQSGAIL 157
Query: 129 DKSLQPHESHIPFLLQFLVDYNLYGMGHLH--LSKLKFRHPVPDAFFP 174
K+ PHESH+P++LQF++DYNLYGM ++H L LKFR D P
Sbjct: 158 SKNFSPHESHVPYILQFMIDYNLYGMSYVHVPLEVLKFRRNHDDDVIP 205
Score = 142 (55.0 bits), Expect = 3.5e-108, Sum P(5) = 3.5e-108
Identities = 40/131 (30%), Positives = 65/131 (49%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDSINVVALAFEND-SDHAVEIYVLLYCKSESHQRSLV- 1014
LT++++EV +RGDL+PDP +D I + A E+ D + Y + Q L
Sbjct: 1300 LTIITLEVFVSTRGDLQPDPMHDEIRCLFYAIEHSLPDEKLPSKACGYIMVNTVQDLLSE 1359
Query: 1015 ----GIP-DCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIG 1069
GI D +V V + E F + + +D DI G++I+ S G++ +RA HL
Sbjct: 1360 GPFHGIDRDIEVQVVTSEAEAFEALLALCERWDADIYAGYEIEMSSWGYVIDRAKHLCFN 1419
Query: 1070 LLNDISRTPLE 1080
+ +SR P +
Sbjct: 1420 IAPLLSRVPTQ 1430
Score = 84 (34.6 bits), Expect = 3.5e-108, Sum P(5) = 3.5e-108
Identities = 41/172 (23%), Positives = 70/172 (40%)
Query: 465 EALGLLKWLATSQAAEDLNSDDELL--HETI-LSPLL--PETTIDKVLEKANTDYERESQ 519
+AL LL+ S++ DL+S L H+ L+P L ET L + D + ++
Sbjct: 443 DALQLLEEQNESESHVDLDSSLAPLSQHKKFELTPELLDKETAATAALFDEDVDSDEDAD 502
Query: 520 KECQDILDSIEDEVNVDGLEERNSSTVDPSNHPETSSHKKIPQIDGSSDDLYLLPCXXXX 579
+E + ++ D+V+ L+ S P+ E + K+PQIDG+ D L P
Sbjct: 503 QETRHDFSTVLDDVDELLLKLTQSQ---PAESKELKASSKLPQIDGADDRLQRTPIKSIS 559
Query: 580 XXXXXXXXXXXXXXXFQHQVPQDTWTNAASKCNVKKKLWGSLPFSVSEQFNK 631
Q +P+ T K + KK + L ++ +K
Sbjct: 560 SKSKSSPSKTPTTPIGQKSLPKSPRT---PKTSAAKK-YAPLALTIGSSSSK 607
Score = 51 (23.0 bits), Expect = 6.0e-13, Sum P(2) = 6.0e-13
Identities = 21/70 (30%), Positives = 30/70 (42%)
Query: 356 VSSFGNDFEVLKSVACATDEENLIKLGP---ANYDYKDPEYLTCLKEGKILSALAPQGLV 412
V S G+ F V + +NL+ L P A + PEYL + E + S L+
Sbjct: 1546 VLSRGSQFRVESMMLRIAKPKNLVPLSPSVQARAHMRAPEYLALIMEPQ--SRFYADPLI 1603
Query: 413 HQEKISLMPS 422
+ SL PS
Sbjct: 1604 VLDFQSLYPS 1613
Score = 45 (20.9 bits), Expect = 3.5e-108, Sum P(5) = 3.5e-108
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 795 VEPRELQSDHPNNNDSNLNQGSLTGVPTLYLN--DGSCLYMLRPPFSPPSVDS 845
+ P+ +S+ P S + P+++ + D ++M P +PPS DS
Sbjct: 944 LSPKSNESNTPELMRSFYEHSLIVNSPSVFSDFLDSPEIHMDSPRSAPPSPDS 996
Score = 43 (20.2 bits), Expect = 5.6e-108, Sum P(5) = 5.6e-108
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 740 ECEKCPLKGGTGISTVCKENMESPSPFDTKKEDASVSVGDWKAD 783
E K LK GT +S + ++ E PS + ++ S S + D
Sbjct: 1205 ETGKSRLKRGTRLSFIGSQDEEPPSS-QSSEQSVSSSAAQAELD 1247
Score = 43 (20.2 bits), Expect = 3.6e-103, Sum P(5) = 3.6e-103
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 925 ISQISGPDGRSKPTPLSQIGFQDPAS 950
+ QI G D R + TP+ I + +S
Sbjct: 540 LPQIDGADDRLQRTPIKSISSKSKSS 565
Score = 38 (18.4 bits), Expect = 2.2e-103, Sum P(5) = 2.2e-103
Identities = 22/80 (27%), Positives = 34/80 (42%)
Query: 473 LATSQAAEDLNSDDELL-HETILSPLLPETTIDKVLEKANTDYERESQKECQDILDSIED 531
L+TS+ D + D+ ++ E ILS P I A RE E D L +E+
Sbjct: 398 LSTSKDESD-DLDETVVDEELILSLTQPHGAIP---HDATL---REEDLELLDALQLLEE 450
Query: 532 EVNVDGLEERNSSTVDPSNH 551
+ + + +SS S H
Sbjct: 451 QNESESHVDLDSSLAPLSQH 470
>SGD|S000006088 [details] [associations]
symbol:REV3 "Catalytic subunit of DNA polymerase zeta"
species:4932 "Saccharomyces cerevisiae" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IPI] [GO:0070987 "error-free translesion synthesis"
evidence=IDA] [GO:0042276 "error-prone translesion synthesis"
evidence=IGI;IDA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 SGD:S000006088
GO:GO:0005739 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0051539 EMBL:BK006949
SUPFAM:SSF53098 EMBL:X96770 GO:GO:0003887 GO:GO:0070987
GO:GO:0042276 eggNOG:COG0417 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 GO:GO:0016035
GeneTree:ENSGT00550000074640 HOGENOM:HOG000194392 OrthoDB:EOG4FN7RT
EMBL:M29683 EMBL:Z73523 PIR:A33602 RefSeq:NP_015158.1
ProteinModelPortal:P14284 SMR:P14284 IntAct:P14284
MINT:MINT-2731570 STRING:P14284 PRIDE:P14284 EnsemblFungi:YPL167C
GeneID:855936 KEGG:sce:YPL167C CYGD:YPL167c OMA:DRWGYTH
NextBio:980687 Genevestigator:P14284 GermOnline:YPL167C
Uniprot:P14284
Length = 1504
Score = 876 (313.4 bits), Expect = 3.4e-104, Sum P(5) = 3.4e-104
Identities = 162/341 (47%), Positives = 232/341 (68%)
Query: 1116 IEDEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTK 1175
+ D WG H+SG+ + GR ++N+WR +R +V L YT+E+ A +L +++P F LT
Sbjct: 804 LSDTWGYAHSSGIMITGRHMINIWRALRSDVNLTQYTIESAAFNILHKRLPHFSFESLTN 863
Query: 1176 -WFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYR 1234
W A + Y + RA++N++++ + D I R E AR+ GIDF SV RGSQ++
Sbjct: 864 MWNAKKSTTELKTVLNYWLSRAQINIQLLRKQDYIARNIEQARLIGIDFHSVYYRGSQFK 923
Query: 1235 VESMLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSM 1294
VES L+R+ +++++ +SPG V Q A+EC+PLVMEPES FY P++VLDFQSLYPS+
Sbjct: 924 VESFLIRICKSESFILLSPGKKDVRKQKALECVPLVMEPESAFYKSPLIVLDFQSLYPSI 983
Query: 1295 MIAYNLCFCTCLGKI--LPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRK 1352
MI YN C+ T +G++ + EN LGVS F ++L LK+++ I PNGV+Y VRK
Sbjct: 984 MIGYNYCYSTMIGRVREINLTENNLGVSKFSLPRNILALLKNDVTIAPNGVVYAKTSVRK 1043
Query: 1353 GVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGR 1412
L ++L +IL R+M+K+ + ++ L R+ N +QLALKL+ANVTYGYT+A FSGR
Sbjct: 1044 STLSKMLTDILDVRVMIKKTMNEIGDDNTTLKRLLNNKQLALKLLANVTYGYTSASFSGR 1103
Query: 1413 MPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
MPC++LADSIVQ GR TLEKAI + ++E W AKV+YGDTD
Sbjct: 1104 MPCSDLADSIVQTGRETLEKAIDIIEKDETWNAKVVYGDTD 1144
Score = 146 (56.5 bits), Expect = 3.4e-104, Sum P(5) = 3.4e-104
Identities = 58/200 (29%), Positives = 93/200 (46%)
Query: 4 SQPDSNIFSVRIVSIDHYMAPPIPGYDICYS-SLQGGKVNEVPVIRVYGSTPAGQKTCLH 62
S S+ F +++ + D+YM+ P D + SL + ++VP IRV+G+ P G + H
Sbjct: 16 SSSKSDYFRIQLNNQDYYMSKPT-FLDPSHGESLPLNQFSQVPNIRVFGALPTGHQVLCH 74
Query: 63 IHRALPYLYVPCADIPVQLRQEDDGYMHAISLALEKALKVKGSAGSKRQHVHECSLVRAK 122
+H LPY+++ Q+ + H + K L+VK A KR+ + L K
Sbjct: 75 VHGILPYMFIKYDG---QIT-DTSTLRHQRCAQVHKTLEVKIRASFKRKKDDKHDLAGDK 130
Query: 123 KGGAVFDKSLQPHESHIPFLLQFLVDYNL-YGMGHLHLSKL-KFRHPVPDA-FFPRKFN- 178
G F + + IPF + V +NL Y + L+ S L + + D F +KF
Sbjct: 131 LGNLNFVADVSVVKG-IPFY-GYHVGWNLFYKISLLNPSCLSRISELIRDGKIFGKKFEI 188
Query: 179 YSSK-----QASADFQVIGC 193
Y S Q +ADF + GC
Sbjct: 189 YESHIPYLLQWTADFNLFGC 208
Score = 130 (50.8 bits), Expect = 3.4e-104, Sum P(5) = 3.4e-104
Identities = 38/154 (24%), Positives = 69/154 (44%)
Query: 944 GFQDPASAGAGEQLTLLSIEVQAESRGDLRPDPRYDSINVVALAFEN-----DSDHAVEI 998
G Q + + LT L++E+ A +R D PDP D ++++ E D D A E
Sbjct: 654 GKQKRKKSSVHDSLTHLTLEIHANTRSDKIPDPAIDEVSMIIWCLEEETFPLDLDIAYEG 713
Query: 999 YVLLYCKSESHQ---RSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGS 1055
++++ SE + I + V E +F ++ DPDIL G++I S
Sbjct: 714 IMIVHKASEDSTFPTKIQHCINEIPVMFYESEFEMFEALTDLVLLLDPDILSGFEIHNFS 773
Query: 1056 LGFLAERAAHLG-IGLLNDISRTPLESKIAAGDS 1088
G++ ER + ++ +++R + K D+
Sbjct: 774 WGYIIERCQKIHQFDIVRELARVKCQIKTKLSDT 807
Score = 113 (44.8 bits), Expect = 9.4e-101, Sum P(5) = 9.4e-101
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 123 KGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFRHPV 168
+ G +F K + +ESHIP+LLQ+ D+NL+G +++ + FR PV
Sbjct: 177 RDGKIFGKKFEIYESHIPYLLQWTADFNLFGCSWINVDRCYFRSPV 222
Score = 49 (22.3 bits), Expect = 3.4e-104, Sum P(5) = 3.4e-104
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 523 QDILDSIEDE--VNVDGLEERNSSTVDPSNHPETSSHKK 559
QDIL+ +EDE +D + S+ VD N P + K+
Sbjct: 531 QDILNKLEDEGFPKIDYKDPFFSNPVDLENKPYAYAGKR 569
Score = 45 (20.9 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 33/139 (23%), Positives = 52/139 (37%)
Query: 697 KRSYRESSECEPPRVKRVN---VTGEQKNAL-SMCEKQLEFDTLQNDECEKCPLKGGTGI 752
KR E EP +R+ V G+Q L C EF L+ + E L I
Sbjct: 1293 KRRINEDHRAEPQYKERIPYLVVKGKQGQLLRERCVSPEEF--LEGENLE---LDSEYYI 1347
Query: 753 STVCKENMESPSPFDTKKEDASVSVGDWKADNCKESKFDATSVEPRELQSDHPNNNDSNL 812
+ + P P D ++VG+W + K + T+ + + + N
Sbjct: 1348 NKIL-----IP-PLDRLFNLIGINVGNWAQEIVKSKRASTTTTKVENITRVGTSATCCNC 1401
Query: 813 NQGSLTGVPTLYLNDGSCL 831
+ LT + +L L D CL
Sbjct: 1402 GE-ELTKICSLQLCD-DCL 1418
Score = 41 (19.5 bits), Expect = 3.4e-104, Sum P(5) = 3.4e-104
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 840 PPSVDSVHKW 849
PP+ D+V KW
Sbjct: 610 PPTYDAVQKW 619
Score = 41 (19.5 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 360 GNDFEVLKSVACATDEENLIKLGPANYDYKDPEYLTCL 397
G+ F+V + E+ I L P D + + L C+
Sbjct: 919 GSQFKVESFLIRICKSESFILLSPGKKDVRKQKALECV 956
Score = 37 (18.1 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 769 KKEDASVSVGDW 780
++E+A +S+ DW
Sbjct: 1493 QREEALISLNDW 1504
>UNIPROTKB|Q75F27 [details] [associations]
symbol:AGOS_AAL099C "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE016814
GenomeReviews:AE016814_GR GO:GO:0003887 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 HOGENOM:HOG000194392
OrthoDB:EOG4FN7RT RefSeq:NP_982443.2 STRING:Q75F27
EnsemblFungi:AAS50267 GeneID:4618518 KEGG:ago:AGOS_AAL099C
Uniprot:Q75F27
Length = 1464
Score = 809 (289.8 bits), Expect = 1.0e-101, Sum P(4) = 1.0e-101
Identities = 160/352 (45%), Positives = 238/352 (67%)
Query: 1108 SLLAKD--AIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKI 1165
S L++D + + EW +H++G+ + GR +LNVWR MR EV L Y +E VA +L ++
Sbjct: 753 SRLSRDDRSGLASEWNYSHSAGIKIAGRHMLNVWRKMRTEVNLAKYNIENVAYHLLHERL 812
Query: 1166 PSIPFRVLTKWFASGPGRARYRCV-EYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFF 1224
P L+ ++ + R + V Y + R + N+ ++N +I+RT E AR+ GIDF+
Sbjct: 813 PKFTHETLSGFWRTKSDRTSIKIVINYCLERVRCNIRLLNLKQVISRTVEQARLIGIDFY 872
Query: 1225 SVLSRGSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVV 1284
SVLSRGSQYRVES+L RLA ++ + ISPG + Q A+EC+PL++EP+ FY PV+V
Sbjct: 873 SVLSRGSQYRVESVLARLAKAEHLMLISPGKGDLRHQRALECVPLILEPDPTFYTSPVLV 932
Query: 1285 LDFQSLYPSMMIAYNLCFCTCLGKI--LPSKENTLGVSSFRPDLHVLRDLKDELLIPPNG 1342
LDFQSLYPS++IAYN C+ T LG+ + + EN +G+++ ++L+ L D + I PNG
Sbjct: 933 LDFQSLYPSIIIAYNYCYTTILGRTREMTAGENKIGITTNILKPNILQLLGDNITIAPNG 992
Query: 1343 VMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAP-SQQILHRIFNARQLALKLIANVT 1401
V YV +RK +L ++L +IL TR+++K+ I + S+++L + N RQLALKL+ANVT
Sbjct: 993 VTYVKQNIRKSILAKMLSDILDTRVLLKRTISDMHNGSKRLLSTLDN-RQLALKLLANVT 1051
Query: 1402 YGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
YGY +A +SGRMPC+++ADSIV GR TL AI + + +KW A+V+YGDTD
Sbjct: 1052 YGYASASYSGRMPCSDIADSIVHTGRETLRAAIQMIEKEDKWGARVVYGDTD 1103
Score = 135 (52.6 bits), Expect = 1.0e-101, Sum P(4) = 1.0e-101
Identities = 36/113 (31%), Positives = 54/113 (47%)
Query: 4 SQPDSNIFSVRIVSIDHYMAPPIPGYDICYSSLQGGKV-NEVPVIRVYGSTPAGQKTCLH 62
S+ + ++ ++ D Y PP D +S GK + VP+IR YG +G H
Sbjct: 29 SEGNEDLIQIQWSDYDCYQWPPT-SLDPKHSLSWPGKAFSTVPIIRFYGKLTSGHNILSH 87
Query: 63 IHRALPYLYVPCADIPVQLRQEDDGYMHAISLALEKAL-----KVKGSAGSKR 110
+H ALPYL++ C P +LR H + + LE AL K GS +K+
Sbjct: 88 LHGALPYLFISCDAPPDELRYNSKATCHRLHVLLELALLNTSTKSHGSESAKQ 140
Score = 129 (50.5 bits), Expect = 1.0e-101, Sum P(4) = 1.0e-101
Identities = 47/165 (28%), Positives = 80/165 (48%)
Query: 924 DISQISGPDGRSKPTPLSQI--GFQDPASAGAGEQLTLLSIEVQAESRGDLRPDPRYDSI 981
+ S I GP + P Q + A +G QL LS+E+ ++R ++ P+PR D I
Sbjct: 593 ETSCIDGPTQSQQSAPSQQAPPNMSNEARE-SGPQLLHLSMEIHVDTRRNMLPNPRTDEI 651
Query: 982 NVVALAFEN-DSDHAVEIYV--LLYCKSES---HQRSLV-GIPDCKVFVCSKEIHLFSHF 1034
++ + + S +E+ LL +E+ ++R + +V + E L + F
Sbjct: 652 KMICWSIDGPQSVGTMELSTDGLLVSLNENDAIYKRIIEEACGKTRVAFFTSEYELITEF 711
Query: 1035 IKILCSFDPDILMGWDIQGGSLGFLAERA--AH-LGIGLLNDISR 1076
K++ DPDIL G++ S G++ RA +H + GLL ISR
Sbjct: 712 AKLVLIIDPDILSGYETNKSSWGYILARAELSHNIDFGLL--ISR 754
Score = 114 (45.2 bits), Expect = 1.0e-101, Sum P(4) = 1.0e-101
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 118 LVRAKKGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFRHPV 168
L + G++ +S+ +E+HIP+LLQ D+NLYG +L+L+ FR PV
Sbjct: 189 LANKLRDGSILGRSVSVYEAHIPYLLQTSADFNLYGCAYLNLTDCYFRGPV 239
Score = 43 (20.2 bits), Expect = 8.7e-10, Sum P(3) = 8.7e-10
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 355 TVSSFGNDFEVLKSVACATDEENLIKLGPANYDYKDPEYLTCL 397
+V S G+ + V +A E+L+ + P D + L C+
Sbjct: 873 SVLSRGSQYRVESVLARLAKAEHLMLISPGKGDLRHQRALECV 915
Score = 39 (18.8 bits), Expect = 2.6e-92, Sum P(4) = 2.6e-92
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 961 SIEVQAESRGDLRPDPRYDSINVVALAFENDSD 993
+I+ +E+ +L P P +VAL + D++
Sbjct: 395 NIKTASETISELWPKPLNGKQKIVALPDDEDNE 427
>UNIPROTKB|I3L6U8 [details] [associations]
symbol:LOC100737059 "DNA polymerase" species:9823 "Sus
scrofa" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 KO:K02350
GeneTree:ENSGT00550000074640 EMBL:FP102400 RefSeq:XP_003480350.1
Ensembl:ENSSSCT00000026193 GeneID:100737059 KEGG:ssc:100737059
OMA:KATISQY Uniprot:I3L6U8
Length = 721
Score = 909 (325.0 bits), Expect = 1.1e-93, Sum P(2) = 1.1e-93
Identities = 180/347 (51%), Positives = 243/347 (70%)
Query: 1118 DEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWF 1177
D++G S +++ GRI LN+WR+MR EV LN YT E V+ VL ++ P FRVL+ WF
Sbjct: 39 DDYGSDTMSEINIVGRITLNLWRIMRNEVALNNYTFENVSFHVLHQRFPLFTFRVLSDWF 98
Query: 1178 ASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVES 1237
+ R++ V++ + R + NL+++ QLD+I +TSE+AR+FGI F VL+RGSQYRVES
Sbjct: 99 DNKTDLYRWKMVDHYISRVRGNLQMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVES 158
Query: 1238 MLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIA 1297
M+LR+A NY+ ++P Q + A +C+PL+MEPES FY++ V+VLDFQSLYPS++IA
Sbjct: 159 MMLRIAKPMNYIPVTPSVQQRSQMRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIA 218
Query: 1298 YNLCFCTCLGKIL---PSKENTLGVSSFR--PDLHVLRDLKDELLIPPNGVMYVPPKVRK 1352
YN CF TCLG + E G +S R PDL L ++ ++ + PNG+ +V P VRK
Sbjct: 219 YNYCFSTCLGHVENLGKHDEFKFGCTSLRVPPDL--LYQIRHDITVSPNGIAFVKPSVRK 276
Query: 1353 GVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGR 1412
GVLPR+LEEIL TR+MVKQ++K + L R+ ARQL LKLIANVT+GYTAA FSGR
Sbjct: 277 GVLPRMLEEILKTRLMVKQSMKAYK-QDRALSRMLEARQLGLKLIANVTFGYTAANFSGR 335
Query: 1413 MPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI 1459
MPC E+ DSIV R TLE+AI VN+ +KW A+V+YGDTD V +
Sbjct: 336 MPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLL 382
Score = 58 (25.5 bits), Expect = 1.1e-93, Sum P(2) = 1.1e-93
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 1055 SLGFLAERAAHLGIGLLNDISRTP---LESKIAA 1085
S G+L +RAA L + L ISR P +E++ AA
Sbjct: 3 SWGYLLQRAAALSVDLCQMISRVPDDKIENRFAA 36
>POMBASE|SPAC688.10 [details] [associations]
symbol:rev3 "DNA polymerase zeta catalytic subunit Rev3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0016035 "zeta DNA
polymerase complex" evidence=ISO] [GO:0042276 "error-prone
translesion synthesis" evidence=ISO] [GO:0043504 "mitochondrial DNA
repair" evidence=IC] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0070987 "error-free translesion synthesis" evidence=ISO]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISO]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 PomBase:SPAC688.10
GO:GO:0005829 GO:GO:0005739 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0051539 GO:GO:0043596 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0070987 GO:GO:0043504 GO:GO:0042276 eggNOG:COG0417
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 RefSeq:NP_594068.1 HSSP:P21189
ProteinModelPortal:Q9P6L6 STRING:Q9P6L6 EnsemblFungi:SPAC688.10.1
GeneID:2543358 KEGG:spo:SPAC688.10 HOGENOM:HOG000194392 OMA:RVPYLII
OrthoDB:EOG4FN7RT NextBio:20804373 Uniprot:Q9P6L6
Length = 1480
Score = 761 (272.9 bits), Expect = 2.0e-89, Sum P(3) = 2.0e-89
Identities = 154/339 (45%), Positives = 225/339 (66%)
Query: 1117 EDEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKW 1176
E+ W T S +++ GR VLN+WR++RGEV L Y++E V + +++ P
Sbjct: 786 ENAWKYTTTSSINIVGRHVLNIWRILRGEVNLLNYSLENVVLNIFKKQTPYYNQADKVHL 845
Query: 1177 FASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVE 1236
+ S + + Y++ R + LEI++ ++ + E AR+ GIDF SV+SRGSQ++VE
Sbjct: 846 WQSSRFHEKQILLNYMLNRTRYCLEILSACAIVTKIREQARIIGIDFMSVISRGSQFKVE 905
Query: 1237 SMLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMI 1296
S++ R+A +NY+ SP QVA Q A+E LPLVMEP+S Y +PVVVLDFQSLYPS++I
Sbjct: 906 SIMFRIAKPENYIFPSPSAKQVAEQNALEALPLVMEPKSDLYNNPVVVLDFQSLYPSIII 965
Query: 1297 AYNLCFCTCLG--KILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGV 1354
AYNLC+ TCLG KI+ K LG + +++ +K+++ I PNG YV VRK +
Sbjct: 966 AYNLCYSTCLGPVKIVNGKVK-LGFMFHSSNPNIVNLIKNDVYISPNGYAYVKENVRKSL 1024
Query: 1355 LPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMP 1414
L ++LEE++ TR MVK+ +K ++++ N+RQLALKLIANVTYGYT+A FSGRMP
Sbjct: 1025 LAKMLEELIETRNMVKRGMKDC--DSDYVNKVLNSRQLALKLIANVTYGYTSASFSGRMP 1082
Query: 1415 CAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
C+E+AD+IV+ GR L ++ ++N + AKV+YGDTD
Sbjct: 1083 CSEIADTIVETGREILSYSLEYINTLDFCHAKVVYGDTD 1121
Score = 149 (57.5 bits), Expect = 2.0e-89, Sum P(3) = 2.0e-89
Identities = 42/145 (28%), Positives = 71/145 (48%)
Query: 941 SQIGFQDPASAGAGEQLTLLSIEVQAESRGDLRPDPRYDSINVVALAFENDSDHAV--EI 998
S++ +DP S + +L++E+ S G L PDP DSI A++ D + ++ +
Sbjct: 640 SKVFRKDPYSC-----VRILALELFCCSHGGLTPDPTKDSIECCFWAYQEDVNSSMIDRV 694
Query: 999 YVLLYCKSESHQRSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGF 1058
++ KS S+ P C V V + E+ L + I + DP I+ G+++ S G+
Sbjct: 695 GFIVVDKSASNSSFGRSFPSCTVLVVNSELELINEVIGLNRQLDPTIVCGYEVHNSSWGY 754
Query: 1059 LAERAAH-LGIGLLNDISRTPLESK 1082
L ERA++ L +SR SK
Sbjct: 755 LIERASYRFNYDLPEQLSRLKCTSK 779
Score = 121 (47.7 bits), Expect = 2.0e-89, Sum P(3) = 2.0e-89
Identities = 35/95 (36%), Positives = 50/95 (52%)
Query: 65 RALPYLYVPCADIPVQLRQEDDGYMHAISLALEKALKVKGSAGSKRQHVHECSLVRAKKG 124
RA P Y P VQL + Y + S +K LK+ + R LV +
Sbjct: 97 RANPETYKPAVQ-SVQLVKGIPFYGY--SFCFQKFLKICLFSPKNRDR-----LVDLFRQ 148
Query: 125 GAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHL 159
GA+ +K +Q +ESH+P+LLQF+VD+NLYG + L
Sbjct: 149 GAILNKVIQVYESHLPYLLQFMVDHNLYGCAPIDL 183
>UNIPROTKB|Q233J3 [details] [associations]
symbol:TTHERM_00391570 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0016035
"zeta DNA polymerase complex" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA]
InterPro:IPR001440 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR011990 InterPro:IPR012337
InterPro:IPR013026 InterPro:IPR017964 InterPro:IPR019734
Pfam:PF00136 Pfam:PF00515 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 Gene3D:1.25.40.10 InterPro:IPR006597
SMART:SM00671 SUPFAM:SSF53098 InterPro:IPR013105 Pfam:PF07719
GO:GO:0003887 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 GO:GO:0016035
EMBL:GG662770 RefSeq:XP_001011832.1 ProteinModelPortal:Q233J3
EnsemblProtists:EAR91587 GeneID:7847176 KEGG:tet:TTHERM_00391570
ProtClustDB:CLSZ2498360 Uniprot:Q233J3
Length = 2315
Score = 581 (209.6 bits), Expect = 1.0e-63, Sum P(5) = 1.0e-63
Identities = 132/346 (38%), Positives = 198/346 (57%)
Query: 1130 VGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCV 1189
+ GR+++N WRL++ + KL Y +E+V V + +IP LT+ + + R
Sbjct: 1063 IAGRMIINTWRLVKHDYKLFCYELESVVNYVFQERIPIFSNWSLTQMYNHEDIKQRVFVF 1122
Query: 1190 EYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYL 1249
EY++ R +I++ + +IN +E +++G DF S + +G Q+R+E ++ R+ Y
Sbjct: 1123 EYMMKRLMKTKDIIDHIQIINTCAEETKLYGFDFQSAICKGHQFRIEHIMNRVTDLLGYK 1182
Query: 1250 AISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKI 1309
+S + V +Q +EC PL +EP FY DPV+VLDF SLYPS+MIAYNLCF TCLG I
Sbjct: 1183 LMSASRYGVQTQRMLECSPLTLEPPKLFYVDPVIVLDFISLYPSIMIAYNLCFSTCLGYI 1242
Query: 1310 LPSKEN----TLGVSS-----FRPDL----HVLRDLKDELLIPPNGVMYVPPKVRKGVLP 1356
+ + LGV F L + + +L ++ + PN V +V VR+GVL
Sbjct: 1243 DDNFQKGGFKKLGVQKQWDVQFEELLKKHNYDIDELMKDIFVAPNKVAFVKKSVREGVLS 1302
Query: 1357 RLLEEILSTRIMVKQAIKKLAPSQQILHRIFNA---RQLALKLIANVTYGYTAAGFSGRM 1413
++ E TR +K + K + H I+N RQ +LKL V +GYT A FSGRM
Sbjct: 1303 QITHEFFFTRQFIKGNMGKYKQNPLYNH-IYNKLQQRQKSLKLFMCVIFGYTGATFSGRM 1361
Query: 1414 PCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI 1459
P +LADSI+Q G+ L +AI+ +N ++KW A+VIYGDTD V I
Sbjct: 1362 PLGDLADSIIQIGKFLLNQAINLINNSKKWGAQVIYGDTDSVFVNI 1407
Score = 154 (59.3 bits), Expect = 1.0e-63, Sum P(5) = 1.0e-63
Identities = 42/132 (31%), Positives = 65/132 (49%)
Query: 955 EQLTLLSIEVQAESRGDLRPDPRYDSINVVALAFEN-DSDHAVEIYVLLYCKSESHQ-RS 1012
E +T+ + E+ A+S D+ PDP D IN + EN + + + C + R
Sbjct: 861 EDITMYTFEIFAKSTPDMLPDPSSDPINFIVFDLENFKRTQGIILVDEINCHEPIDKVRK 920
Query: 1013 LVGIPDC--KVFVCSK-EIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIG 1069
G D K + +K E L FIK + F+ DI+ GWDI+ SL + + R LGI
Sbjct: 921 YYGFNDSMFKTIIVTKNEEELLLTFIKQIHIFNVDIITGWDIEKKSLFYFSHRCWQLGID 980
Query: 1070 LLNDISRTPLES 1081
+++ +SR P S
Sbjct: 981 VMDILSRCPKNS 992
Score = 73 (30.8 bits), Expect = 1.0e-63, Sum P(5) = 1.0e-63
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 40 KVNEVPVIRVYGSTPAGQKTCLHIH 64
K+ + PV R+YG+ G CLHIH
Sbjct: 84 KILQAPVARMYGNDKQGNSVCLHIH 108
Score = 49 (22.3 bits), Expect = 1.0e-63, Sum P(5) = 1.0e-63
Identities = 19/73 (26%), Positives = 32/73 (43%)
Query: 490 HETILSPLLPETTIDKVLEKANTDYERESQKECQDILDSIEDEVNV--DGLEERNSSTVD 547
+E +L + E +D + E D E + Q E D DS DE + D + N + D
Sbjct: 489 YEKLLKGQVKE--LDLLPEDQQEDSENDQQNEDIDQYDSDSDEQSSSSDDDNDENINDED 546
Query: 548 PSNHPETSSHKKI 560
+N+ + K +
Sbjct: 547 DNNNFQEKDSKNM 559
Score = 48 (22.0 bits), Expect = 1.0e-63, Sum P(5) = 1.0e-63
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 118 LVRAKKGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFR 165
LV + G V + +E H+ L+ D ++ G+ + L K R
Sbjct: 191 LVGILESGVVMNIEFVIYEGHLTHFLKLYSDLDIKGLREIKLLKYSLR 238
Score = 44 (20.5 bits), Expect = 3.4e-63, Sum P(5) = 3.4e-63
Identities = 8/41 (19%), Positives = 24/41 (58%)
Query: 507 LEKANTDYERESQKECQDILDSIEDEVNVDGLEERNSSTVD 547
+++ ++D + +S D ++I DE + + +E++S ++
Sbjct: 520 IDQYDSDSDEQSSSSDDDNDENINDEDDNNNFQEKDSKNME 560
>WB|WBGene00021344 [details] [associations]
symbol:Y37B11A.2 species:6239 "Caenorhabditis elegans"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 KO:K02350 GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:FO080137 RefSeq:NP_498248.2
ProteinModelPortal:Q9BKQ3 SMR:Q9BKQ3 EnsemblMetazoa:Y37B11A.2
GeneID:175809 KEGG:cel:CELE_Y37B11A.2 UCSC:Y37B11A.2 CTD:175809
WormBase:Y37B11A.2 InParanoid:Q9BKQ3 OMA:QERCMSE NextBio:889762
Uniprot:Q9BKQ3
Length = 1133
Score = 655 (235.6 bits), Expect = 3.4e-63, Sum P(2) = 3.4e-63
Identities = 151/341 (44%), Positives = 212/341 (62%)
Query: 1132 GRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEY 1191
GR++++VW+++R ++ L Y + + VLR+KIP + L + R +
Sbjct: 484 GRLLVSVWKVVRSDLALRNYDLGSAVANVLRKKIPMLDNAALMRRIKGERSAIRNDVHLH 543
Query: 1192 VVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAI 1251
++ + LN+ ++ +++ + +E+ARV+GI F V +RGSQ RVESMLLRLAH N++A
Sbjct: 544 LLKLSSLNISLLTEMNWFLKNAEMARVYGIQFHEVWTRGSQLRVESMLLRLAHRMNFVAP 603
Query: 1252 SPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKI-- 1309
S + Q + E L L++EP+S Y DPV+VLDFQSLYPSM+IAYN C+ T LGKI
Sbjct: 604 SITHLQRNMMGSPEQLQLILEPQSKVYFDPVIVLDFQSLYPSMVIAYNYCYSTILGKIGN 663
Query: 1310 LPS--------KENTLGVSSFRP---DLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRL 1358
L +E LG + P D+ L K E+ P M+V R+GV+P L
Sbjct: 664 LVQMNDESRNREEIVLGAIKYHPSKDDIVKLVAYK-EVCASPLASMFVKKSKREGVMPLL 722
Query: 1359 LEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAEL 1418
L EIL+ RIMVK A+K+ + L RI +ARQLALKL+ANV+YGYTAA +SGRMPCAEL
Sbjct: 723 LREILAARIMVKSAMKRTKNKK--LKRILDARQLALKLVANVSYGYTAANWSGRMPCAEL 780
Query: 1419 ADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI 1459
AD+I+ GR TLE++I V + A+VIYGDTD V +
Sbjct: 781 ADAILGKGRETLERSIEMVQRGDYGGAEVIYGDTDSMFVLV 821
Score = 76 (31.8 bits), Expect = 3.4e-63, Sum P(2) = 3.4e-63
Identities = 44/190 (23%), Positives = 81/190 (42%)
Query: 914 EPNACADCLQDISQISGPDGRSKPTP----LSQIGFQDPASAGAGEQ-----LTLLSIEV 964
E AC+ + D + ++ + S+P LSQ +P+++ + L + S+E+
Sbjct: 297 EMTACS-VMTDETVVAAAE-HSQPVEQTRLLSQTSIGEPSTSEKSVESDIVGLCVASLEL 354
Query: 965 QAESRGDLRPDPRYDSINVVALAFENDSDH--AVEIYVLLYCKSESHQRSLVGIPDCKVF 1022
+++ + PD I V+LA ND + +++VLL S D +V
Sbjct: 355 LVDTKMPM-PDAASSEIVSVSLAIYNDVCRCSSPKLHVLLTTLPVGPAYS-----DRRVV 408
Query: 1023 VCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPL-ES 1081
E+ + K + +D D+++G++ S GF R LG + D + E
Sbjct: 409 HMETELEMLEEVAKWIVQYDVDVMIGYETIRLSWGFFFRRIKLLGSRISMDRALIDAYED 468
Query: 1082 KIAAGDSEIS 1091
I D EI+
Sbjct: 469 HIEVDDQEIT 478
Score = 38 (18.4 bits), Expect = 3.4e-59, Sum P(2) = 3.4e-59
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 1074 ISRTPLESKIAAGDSEISERGITDNMLAEPVVAESLL 1110
+ +T L S+ + G+ SE+ + +++ V + LL
Sbjct: 319 VEQTRLLSQTSIGEPSTSEKSVESDIVGLCVASLELL 355
>UNIPROTKB|Q9BKQ3 [details] [associations]
symbol:Y37B11A.2 "DNA polymerase" species:6239
"Caenorhabditis elegans" [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0016035 "zeta DNA polymerase complex"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005634 GO:GO:0005694
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 KO:K02350 GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:FO080137 RefSeq:NP_498248.2
ProteinModelPortal:Q9BKQ3 SMR:Q9BKQ3 EnsemblMetazoa:Y37B11A.2
GeneID:175809 KEGG:cel:CELE_Y37B11A.2 UCSC:Y37B11A.2 CTD:175809
WormBase:Y37B11A.2 InParanoid:Q9BKQ3 OMA:QERCMSE NextBio:889762
Uniprot:Q9BKQ3
Length = 1133
Score = 655 (235.6 bits), Expect = 3.4e-63, Sum P(2) = 3.4e-63
Identities = 151/341 (44%), Positives = 212/341 (62%)
Query: 1132 GRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEY 1191
GR++++VW+++R ++ L Y + + VLR+KIP + L + R +
Sbjct: 484 GRLLVSVWKVVRSDLALRNYDLGSAVANVLRKKIPMLDNAALMRRIKGERSAIRNDVHLH 543
Query: 1192 VVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAI 1251
++ + LN+ ++ +++ + +E+ARV+GI F V +RGSQ RVESMLLRLAH N++A
Sbjct: 544 LLKLSSLNISLLTEMNWFLKNAEMARVYGIQFHEVWTRGSQLRVESMLLRLAHRMNFVAP 603
Query: 1252 SPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKI-- 1309
S + Q + E L L++EP+S Y DPV+VLDFQSLYPSM+IAYN C+ T LGKI
Sbjct: 604 SITHLQRNMMGSPEQLQLILEPQSKVYFDPVIVLDFQSLYPSMVIAYNYCYSTILGKIGN 663
Query: 1310 LPS--------KENTLGVSSFRP---DLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRL 1358
L +E LG + P D+ L K E+ P M+V R+GV+P L
Sbjct: 664 LVQMNDESRNREEIVLGAIKYHPSKDDIVKLVAYK-EVCASPLASMFVKKSKREGVMPLL 722
Query: 1359 LEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAEL 1418
L EIL+ RIMVK A+K+ + L RI +ARQLALKL+ANV+YGYTAA +SGRMPCAEL
Sbjct: 723 LREILAARIMVKSAMKRTKNKK--LKRILDARQLALKLVANVSYGYTAANWSGRMPCAEL 780
Query: 1419 ADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI 1459
AD+I+ GR TLE++I V + A+VIYGDTD V +
Sbjct: 781 ADAILGKGRETLERSIEMVQRGDYGGAEVIYGDTDSMFVLV 821
Score = 76 (31.8 bits), Expect = 3.4e-63, Sum P(2) = 3.4e-63
Identities = 44/190 (23%), Positives = 81/190 (42%)
Query: 914 EPNACADCLQDISQISGPDGRSKPTP----LSQIGFQDPASAGAGEQ-----LTLLSIEV 964
E AC+ + D + ++ + S+P LSQ +P+++ + L + S+E+
Sbjct: 297 EMTACS-VMTDETVVAAAE-HSQPVEQTRLLSQTSIGEPSTSEKSVESDIVGLCVASLEL 354
Query: 965 QAESRGDLRPDPRYDSINVVALAFENDSDH--AVEIYVLLYCKSESHQRSLVGIPDCKVF 1022
+++ + PD I V+LA ND + +++VLL S D +V
Sbjct: 355 LVDTKMPM-PDAASSEIVSVSLAIYNDVCRCSSPKLHVLLTTLPVGPAYS-----DRRVV 408
Query: 1023 VCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPL-ES 1081
E+ + K + +D D+++G++ S GF R LG + D + E
Sbjct: 409 HMETELEMLEEVAKWIVQYDVDVMIGYETIRLSWGFFFRRIKLLGSRISMDRALIDAYED 468
Query: 1082 KIAAGDSEIS 1091
I D EI+
Sbjct: 469 HIEVDDQEIT 478
Score = 38 (18.4 bits), Expect = 3.4e-59, Sum P(2) = 3.4e-59
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 1074 ISRTPLESKIAAGDSEISERGITDNMLAEPVVAESLL 1110
+ +T L S+ + G+ SE+ + +++ V + LL
Sbjct: 319 VEQTRLLSQTSIGEPSTSEKSVESDIVGLCVASLELL 355
>FB|FBgn0263600 [details] [associations]
symbol:DNApol-delta "DNA-polymerase-delta" species:7227
"Drosophila melanogaster" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS;NAS;IDA] [GO:0043625 "delta DNA polymerase
complex" evidence=ISS;IDA] [GO:0008296 "3'-5'-exodeoxyribonuclease
activity" evidence=IDA] [GO:0006273 "lagging strand elongation"
evidence=NAS] [GO:0006272 "leading strand elongation" evidence=NAS]
[GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=NAS] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005875
"microtubule associated complex" evidence=IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005875 EMBL:AE014296
GO:GO:0022008 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006974 GO:GO:0051539 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0008296 Gene3D:3.90.1600.10
InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GeneTree:ENSGT00560000077365 GO:GO:0043625 EMBL:X88928
EMBL:AY113526 RefSeq:NP_524099.2 UniGene:Dm.2838
ProteinModelPortal:P54358 SMR:P54358 DIP:DIP-22360N IntAct:P54358
MINT:MINT-877114 STRING:P54358 PaxDb:P54358
EnsemblMetazoa:FBtr0075522 GeneID:39746 KEGG:dme:Dmel_CG5949
CTD:39746 FlyBase:FBgn0263600 InParanoid:P54358 OMA:RSFRPYF
OrthoDB:EOG4RFJ7F PhylomeDB:P54358 GenomeRNAi:39746 NextBio:815171
Bgee:P54358 GermOnline:CG5949 Uniprot:P54358
Length = 1092
Score = 411 (149.7 bits), Expect = 5.0e-44, Sum P(3) = 5.0e-44
Identities = 115/358 (32%), Positives = 185/358 (51%)
Query: 1108 SLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPS 1167
S++ + + + GR ++ GR+ ++ ++ + KL YT+ AV+ L+ +
Sbjct: 413 SVIKEQMLQSKQMGRRENQYVNFEGRVPFDLLFVLLRDYKLRSYTLNAVSYHFLQEQKED 472
Query: 1168 IPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVL 1227
+ ++T +G + R R Y + A L L ++ +L I E+ARV G+ S+L
Sbjct: 473 VHHSIITD-LQNGDEQTRRRLAMYCLKDAYLPLRLLEKLMAIVNYMEMARVTGVPLESLL 531
Query: 1228 SRGSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDF 1287
+RG Q +V S LLR A T+ + I P S E V+EP+ G+YADP+ LDF
Sbjct: 532 TRGQQIKVLSQLLRKAKTKGF--IMPSYTSQGSDEQYEGAT-VIEPKRGYYADPISTLDF 588
Query: 1288 QSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELL--IPPNGVMY 1345
SLYPS+M+A+NLC+ T + LG + R L +L+D+ + P N +
Sbjct: 589 ASLYPSIMMAHNLCYTTLV----------LGGT--REKLRQQENLQDDQVERTPANNY-F 635
Query: 1346 VPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYT 1405
V +VR+G+LP +LE +L+ R K +K + ++ + RQLALK+ AN YG+T
Sbjct: 636 VKSEVRRGLLPEILESLLAARKRAKNDLK--VETDPFKRKVLDGRQLALKISANSVYGFT 693
Query: 1406 AAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKW------KAKVIYGDTDRYTV 1457
A G++PC E++ S+ GR+ +E + V + A VIYGDTD V
Sbjct: 694 GAQV-GKLPCLEISGSVTAYGRTMIEMTKNEVESHYTQANGYENNAVVIYGDTDSVMV 750
Score = 119 (46.9 bits), Expect = 5.0e-44, Sum P(3) = 5.0e-44
Identities = 28/114 (24%), Positives = 54/114 (47%)
Query: 6 PDSNIFSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHR 65
P + + + +++Y+ P+PG + G ++ VPV+R++G T G C H+H
Sbjct: 71 PSKHNLEFQQLDVENYLGQPLPG-------MPGAQIGPVPVVRMFGVTMEGNSVCCHVHG 123
Query: 66 ALPYLYVPCADIPVQLRQEDDGYMHAISLALEKALKVKGSAGSKRQHVHECSLV 119
PY Y+ + P Q + + + AL++ KV + + +V E L+
Sbjct: 124 FCPYFYI---EAPSQFEEH---HCEKLQKALDQ--KVIADIRNNKDNVQEAVLM 169
Score = 79 (32.9 bits), Expect = 5.0e-44, Sum P(3) = 5.0e-44
Identities = 25/113 (22%), Positives = 51/113 (45%)
Query: 959 LLSIEVQAESRGDLRPDPRYDSINVVA--LAFENDSDHAVE-IYVLLYCKSESHQRSLVG 1015
+LS +++ R + P+ + D + +A + + + + + ++ L C ++G
Sbjct: 296 ILSFDIECAGRKGIFPEAKIDPVIQIANMVIRQGEREPFIRNVFTLNECAP------IIG 349
Query: 1016 IPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGI 1068
+V KE + + + DPDIL G++I +L RAAHL +
Sbjct: 350 ---SQVLCHDKETQMLDKWSAFVREVDPDILTGYNINNFDFPYLLNRAAHLKV 399
Score = 46 (21.3 bits), Expect = 2.0e-36, Sum P(3) = 2.0e-36
Identities = 29/132 (21%), Positives = 56/132 (42%)
Query: 60 CLHIHRALPYLYVPCADIPVQLRQEDDGYMHAISLA-LEKALKVKGSAGSKRQHVHECSL 118
C + +AL + ADI R D A+ + L + L + G G K+Q + S+
Sbjct: 141 CEKLQKALDQKVI--ADI----RNNKDNVQEAVLMVELVEKLNIHGYNGDKKQRYIKISV 194
Query: 119 V---------RAKKGGAVFDK----SLQPHESHIPFLLQFLVDYNLYGMGHLHLS----K 161
R K + + + E++I F ++F+VD ++ G + L +
Sbjct: 195 TLPRFVAAASRLLKKEVIMSEIDFQDCRAFENNIDFDIRFMVDTDVVGCNWIELPMGHWR 254
Query: 162 LKFRH--PVPDA 171
++ H P+P++
Sbjct: 255 IRNSHSKPLPES 266
Score = 39 (18.8 bits), Expect = 7.3e-40, Sum P(3) = 7.3e-40
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 497 LLPETTIDKVLEKANTDYERESQKE 521
+ PE ID V++ AN R+ ++E
Sbjct: 309 IFPEAKIDPVIQIANMVI-RQGERE 332
Score = 38 (18.4 bits), Expect = 9.3e-40, Sum P(3) = 9.3e-40
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 425 KDTCPELPFGGEIHSSEMVGAPGQKEPLI 453
K PE I + MV G++EP I
Sbjct: 307 KGIFPEAKIDPVIQIANMVIRQGEREPFI 335
>GENEDB_PFALCIPARUM|PF10_0362 [details] [associations]
symbol:PF10_0362 "DNA polymerase zeta catalytic
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0016035
"zeta DNA polymerase complex" evidence=ISS] InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR008973 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF49562
SUPFAM:SSF53098 EMBL:AE014185 GO:GO:0003887 KO:K02350 GO:GO:0016035
RefSeq:XP_001347646.1 ProteinModelPortal:Q8IJ38
EnsemblProtists:PF10_0362:mRNA GeneID:810519 KEGG:pfa:PF10_0362
EuPathDB:PlasmoDB:PF3D7_1037000 HOGENOM:HOG000284524
ProtClustDB:CLSZ2446634 Uniprot:Q8IJ38
Length = 2240
Score = 255 (94.8 bits), Expect = 1.9e-38, Sum P(5) = 1.9e-38
Identities = 57/139 (41%), Positives = 85/139 (61%)
Query: 1317 LGVSSFRPDLHV-LRDLKDE-LLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIK 1374
LGV P + +++LK E ++I N +YV RKG+ P LE+IL TRIM+K+
Sbjct: 1304 LGVMKNVPSISSRIKNLKSEDIIITSNNTIYVKKHKRKGICPLFLEDILKTRIMLKRC-- 1361
Query: 1375 KLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAI 1434
+ ++ +++ N R LKLI NV GY A FSGRMPC ++++SI+ GR+ L I
Sbjct: 1362 -MGMYEERVNKKLNERMGKLKLILNVATGYIGANFSGRMPCVDISESIISIGRNFLLFII 1420
Query: 1435 SFVNENEKWKAKVIYGDTD 1453
++ EN K+ K++YGDTD
Sbjct: 1421 EYIKENYKF-VKILYGDTD 1438
Score = 242 (90.2 bits), Expect = 1.9e-38, Sum P(5) = 1.9e-38
Identities = 47/134 (35%), Positives = 82/134 (61%)
Query: 1185 RYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAH 1244
R+ +++ + + L I +++ + R + +D S+++RGSQY +ES LL+++
Sbjct: 1005 RHITIKHYLRKVYFILLIYDKICFLKRKMNFCKYIHVDLLSLINRGSQYIIESFLLKMSI 1064
Query: 1245 TQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCT 1304
NY+ SP N ++ Q + PL+++P+S P++V DFQSLYPS++IA+N+C+ T
Sbjct: 1065 KYNYVLYSPSNKEIFDQRPILHTPLILQPKSSINFFPLLVFDFQSLYPSILIAFNICYST 1124
Query: 1305 CLGKI-LPSKENTL 1317
CLG I L K N +
Sbjct: 1125 CLGTITLKRKLNQM 1138
Score = 77 (32.2 bits), Expect = 1.9e-38, Sum P(5) = 1.9e-38
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 21 YMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPYLYV 72
Y P +P +D + G ++ V +I++ G + GQ+ CL+IH L Y+Y+
Sbjct: 22 YKKPILP-FDSLKCKISGKEIPYVCIIQILGLSLLGQRVCLYIHD-LMYVYL 71
Score = 61 (26.5 bits), Expect = 1.9e-38, Sum P(5) = 1.9e-38
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 135 HESHIPFLLQFLVDYNLYGMGHLHLSK-LKFR 165
+E HI ++L FL N+YG +++ K + FR
Sbjct: 175 YEVHINYMLHFLCMKNIYGCSEIYIDKNIYFR 206
Score = 43 (20.2 bits), Expect = 4.5e-19, Sum P(4) = 4.5e-19
Identities = 19/85 (22%), Positives = 41/85 (48%)
Query: 495 SPLLPETTIDKVLEKANTDYERESQKECQDILDSIED--EVNVDGLEERN----SSTVDP 548
S L T+ + L + D E+ ++K+ ++I S+ + E +G+ ++N + +
Sbjct: 1123 STCLGTITLKRKLNQM--DEEKNNEKKDENIEGSLMEKCETYKNGINDKNHIYDKNELSC 1180
Query: 549 SNHPETSSHKKIPQIDGSSDDLYLL 573
SN + S + ++ S D YL+
Sbjct: 1181 SNKNDLPSDEYTDMMNISEDAKYLI 1205
Score = 39 (18.8 bits), Expect = 1.9e-38, Sum P(5) = 1.9e-38
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 695 RRKRSYRESSECEPPRVKR 713
+RK R S + EPPR+ +
Sbjct: 556 KRKDVVRYSFKKEPPRINK 574
Score = 39 (18.8 bits), Expect = 1.9e-38, Sum P(5) = 1.9e-38
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 783 DNCKE-SKFDATSVEPRELQSDHPNNNDSN 811
DN + K++ + +L+ DH N+D N
Sbjct: 386 DNIENVKKYNKVINDDMKLKEDHNFNSDMN 415
Score = 39 (18.8 bits), Expect = 5.0e-14, Sum P(3) = 5.0e-14
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 5 QPDSNIFSVRIVSIDHYMAPP--IPGYDICYSSLQG 38
QP S+I ++ D P + ++ICYS+ G
Sbjct: 1092 QPKSSINFFPLLVFDFQSLYPSILIAFNICYSTCLG 1127
>UNIPROTKB|Q8IJ38 [details] [associations]
symbol:PF10_0362 "DNA polymerase" species:36329 "Plasmodium
falciparum 3D7" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0016035 "zeta DNA polymerase complex"
evidence=ISS] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR008973 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF49562 SUPFAM:SSF53098
EMBL:AE014185 GO:GO:0003887 KO:K02350 GO:GO:0016035
RefSeq:XP_001347646.1 ProteinModelPortal:Q8IJ38
EnsemblProtists:PF10_0362:mRNA GeneID:810519 KEGG:pfa:PF10_0362
EuPathDB:PlasmoDB:PF3D7_1037000 HOGENOM:HOG000284524
ProtClustDB:CLSZ2446634 Uniprot:Q8IJ38
Length = 2240
Score = 255 (94.8 bits), Expect = 1.9e-38, Sum P(5) = 1.9e-38
Identities = 57/139 (41%), Positives = 85/139 (61%)
Query: 1317 LGVSSFRPDLHV-LRDLKDE-LLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIK 1374
LGV P + +++LK E ++I N +YV RKG+ P LE+IL TRIM+K+
Sbjct: 1304 LGVMKNVPSISSRIKNLKSEDIIITSNNTIYVKKHKRKGICPLFLEDILKTRIMLKRC-- 1361
Query: 1375 KLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAI 1434
+ ++ +++ N R LKLI NV GY A FSGRMPC ++++SI+ GR+ L I
Sbjct: 1362 -MGMYEERVNKKLNERMGKLKLILNVATGYIGANFSGRMPCVDISESIISIGRNFLLFII 1420
Query: 1435 SFVNENEKWKAKVIYGDTD 1453
++ EN K+ K++YGDTD
Sbjct: 1421 EYIKENYKF-VKILYGDTD 1438
Score = 242 (90.2 bits), Expect = 1.9e-38, Sum P(5) = 1.9e-38
Identities = 47/134 (35%), Positives = 82/134 (61%)
Query: 1185 RYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAH 1244
R+ +++ + + L I +++ + R + +D S+++RGSQY +ES LL+++
Sbjct: 1005 RHITIKHYLRKVYFILLIYDKICFLKRKMNFCKYIHVDLLSLINRGSQYIIESFLLKMSI 1064
Query: 1245 TQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCT 1304
NY+ SP N ++ Q + PL+++P+S P++V DFQSLYPS++IA+N+C+ T
Sbjct: 1065 KYNYVLYSPSNKEIFDQRPILHTPLILQPKSSINFFPLLVFDFQSLYPSILIAFNICYST 1124
Query: 1305 CLGKI-LPSKENTL 1317
CLG I L K N +
Sbjct: 1125 CLGTITLKRKLNQM 1138
Score = 77 (32.2 bits), Expect = 1.9e-38, Sum P(5) = 1.9e-38
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 21 YMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPYLYV 72
Y P +P +D + G ++ V +I++ G + GQ+ CL+IH L Y+Y+
Sbjct: 22 YKKPILP-FDSLKCKISGKEIPYVCIIQILGLSLLGQRVCLYIHD-LMYVYL 71
Score = 61 (26.5 bits), Expect = 1.9e-38, Sum P(5) = 1.9e-38
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 135 HESHIPFLLQFLVDYNLYGMGHLHLSK-LKFR 165
+E HI ++L FL N+YG +++ K + FR
Sbjct: 175 YEVHINYMLHFLCMKNIYGCSEIYIDKNIYFR 206
Score = 43 (20.2 bits), Expect = 4.5e-19, Sum P(4) = 4.5e-19
Identities = 19/85 (22%), Positives = 41/85 (48%)
Query: 495 SPLLPETTIDKVLEKANTDYERESQKECQDILDSIED--EVNVDGLEERN----SSTVDP 548
S L T+ + L + D E+ ++K+ ++I S+ + E +G+ ++N + +
Sbjct: 1123 STCLGTITLKRKLNQM--DEEKNNEKKDENIEGSLMEKCETYKNGINDKNHIYDKNELSC 1180
Query: 549 SNHPETSSHKKIPQIDGSSDDLYLL 573
SN + S + ++ S D YL+
Sbjct: 1181 SNKNDLPSDEYTDMMNISEDAKYLI 1205
Score = 39 (18.8 bits), Expect = 1.9e-38, Sum P(5) = 1.9e-38
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 695 RRKRSYRESSECEPPRVKR 713
+RK R S + EPPR+ +
Sbjct: 556 KRKDVVRYSFKKEPPRINK 574
Score = 39 (18.8 bits), Expect = 1.9e-38, Sum P(5) = 1.9e-38
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 783 DNCKE-SKFDATSVEPRELQSDHPNNNDSN 811
DN + K++ + +L+ DH N+D N
Sbjct: 386 DNIENVKKYNKVINDDMKLKEDHNFNSDMN 415
Score = 39 (18.8 bits), Expect = 5.0e-14, Sum P(3) = 5.0e-14
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 5 QPDSNIFSVRIVSIDHYMAPP--IPGYDICYSSLQG 38
QP S+I ++ D P + ++ICYS+ G
Sbjct: 1092 QPKSSINFFPLLVFDFQSLYPSILIAFNICYSTCLG 1127
>UNIPROTKB|Q22HL1 [details] [associations]
symbol:TTHERM_00636920 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0000084 "S phase of mitotic
cell cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0007346
GO:GO:0000166 GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
KO:K02327 InterPro:IPR025687 Pfam:PF14260 GO:GO:0043625
ProtClustDB:PTZ00166 EMBL:GG662588 RefSeq:XP_001032353.1
EnsemblProtists:EAR84690 GeneID:7846549 KEGG:tet:TTHERM_00636920
Uniprot:Q22HL1
Length = 1124
Score = 227 (85.0 bits), Expect = 2.2e-37, Sum P(5) = 2.2e-37
Identities = 60/188 (31%), Positives = 93/188 (49%)
Query: 1121 GRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASG 1180
G ++ GRI L++ M E KL+ Y++ +V+ L + + ++ G
Sbjct: 435 GMRDTKEMNFEGRIQLDMMMHMHRETKLSSYSLNSVSYHFLNEQKEDVHHTQISG-LQKG 493
Query: 1181 PGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLL 1240
R R Y + A+L L++M +L I +E+ARV G+ + +RG Q +V S L
Sbjct: 494 DAETRKRLAVYCLKDAQLPLKLMQKLMCIYNYTEMARVTGVPINFLFTRGQQIKVASQLY 553
Query: 1241 RLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNL 1300
R N L I P E V++P+ GFY P+ LDF SLYPS+M+A+NL
Sbjct: 554 RRTKLLN-LYI-PTERSQGQGDKFEGA-FVLQPKKGFYDKPIATLDFASLYPSIMMAHNL 610
Query: 1301 CFCTCLGK 1308
C+ T + K
Sbjct: 611 CYSTLISK 618
Score = 209 (78.6 bits), Expect = 2.2e-37, Sum P(5) = 2.2e-37
Identities = 50/132 (37%), Positives = 76/132 (57%)
Query: 1333 KDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHR-IFNARQ 1391
KD+ + P+G + P VR+G+LP +L+++L+ R K+A +LA L + + + RQ
Sbjct: 626 KDDYTLTPHGDYFAKPHVRQGILPDILKDLLAAR---KKAKNELAKETDPLRKAVLDGRQ 682
Query: 1392 LALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFV-NENEK-----WKA 1445
LALK+ AN YG+T A G++PC E++ S+ GR +E FV N K + +
Sbjct: 683 LALKISANSVYGFTGAQV-GQLPCLEISSSVTSFGRQMIEATRDFVLNHYNKANGYNYDS 741
Query: 1446 KVIYGDTDRYTV 1457
VIYGDTD V
Sbjct: 742 DVIYGDTDSVMV 753
Score = 80 (33.2 bits), Expect = 2.2e-37, Sum P(5) = 2.2e-37
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 136 ESHIPFLLQFLVDYNLYGMGHLHLSKLKFR 165
ES+IPF L++++D ++ GMG + L K KF+
Sbjct: 233 ESNIPFALRYMIDADIVGMGWIKLDKEKFK 262
Score = 73 (30.8 bits), Expect = 2.2e-37, Sum P(5) = 2.2e-37
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 1016 IPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGI 1068
IP C V E L + K L + DPDI +G++I ++ ER L I
Sbjct: 354 IPGCIVKSFKTETELLLEWEKFLQNVDPDIFLGYNITNFDFPYILERGKQLKI 406
Score = 58 (25.5 bits), Expect = 2.2e-37, Sum P(5) = 2.2e-37
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 45 PVIRVYGSTPAGQKTCLHIHRALPYLYV 72
P+IR+YG T + I +PYL+V
Sbjct: 111 PIIRMYGVTKDQHSVLVSIRGVVPYLFV 138
Score = 49 (22.3 bits), Expect = 4.3e-33, Sum P(5) = 4.3e-33
Identities = 17/69 (24%), Positives = 34/69 (49%)
Query: 511 NTDYERESQKECQDILDSIEDEVNVDGLEERNSSTVDPSNHPETSSHKKI--PQID---- 564
N+DY +E + ++++ D+V + EE + + + +N + S+KK P ID
Sbjct: 5 NSDYSQEPEDFGDELIEDDFDDVEFN--EEEDIALLQ-ANEDQDLSNKKYCRPPIDTTKI 61
Query: 565 GSSDDLYLL 573
+D Y +
Sbjct: 62 NEQNDFYFM 70
Score = 48 (22.0 bits), Expect = 5.4e-33, Sum P(5) = 5.4e-33
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 476 SQAAEDLNSDDELLHETILSPLLPETTIDKVLEKANTDYERESQKECQDILDSIE-DEVN 534
SQ ED DEL+ + E D L +AN D + ++K C+ +D+ + +E N
Sbjct: 9 SQEPEDFG--DELIEDDFDDVEFNEEE-DIALLQANEDQDLSNKKYCRPPIDTTKINEQN 65
Score = 47 (21.6 bits), Expect = 4.3e-33, Sum P(5) = 4.3e-33
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 872 KGSDIRPVLEEMHQEADEMISTEPTPDLNGVTAIMHN 908
+G D + +E +++ DE EP + GVT H+
Sbjct: 88 QGDDKQKQAQESNKKEDENSEREPIIRMYGVTKDQHS 124
Score = 44 (20.5 bits), Expect = 1.1e-33, Sum P(5) = 1.1e-33
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 526 LDSIEDEVNVDGLEERNSSTVDPSNHPETSSHKKIPQIDGS--SDDLYL 572
L SI D++N G +RN T + E + I G + D YL
Sbjct: 151 LKSIMDDLNKQGKFQRNVKTTNFIRKIEVVKGESIKYYKGKDYAQDTYL 199
>ZFIN|ZDB-GENE-060429-1 [details] [associations]
symbol:pold1 "polymerase (DNA directed), delta 1,
catalytic subunit" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IBA] [GO:0006260 "DNA replication" evidence=IEA;IMP]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IBA]
[GO:0045004 "DNA replication proofreading" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IBA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 ZFIN:ZDB-GENE-060429-1
GO:GO:0007346 GO:GO:0000166 GO:GO:0003677 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 GO:GO:0043625
EMBL:AY883095 IPI:IPI00631610 RefSeq:NP_001034899.1
UniGene:Dr.49022 ProteinModelPortal:Q2KNE0 STRING:Q2KNE0
GeneID:556456 KEGG:dre:556456 InParanoid:Q2KNE0 NextBio:20881495
ArrayExpress:Q2KNE0 Uniprot:Q2KNE0
Length = 1105
Score = 321 (118.1 bits), Expect = 2.1e-36, Sum P(4) = 2.1e-36
Identities = 103/356 (28%), Positives = 171/356 (48%)
Query: 1107 ESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIP 1166
+S+L + + GR +++ GR+ ++ +++ + KL YT+ AV+ L+ +
Sbjct: 432 KSVLKDSSFQSKQMGRRENKTINMEGRVQFDLLQVLLRDYKLRSYTLNAVSFHFLQEQKE 491
Query: 1167 SIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSV 1226
+ ++T +G + R R Y + A L L ++ +L + E+ARV G+ +
Sbjct: 492 DVQHSIITD-LQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMARVTGVPLTYL 550
Query: 1227 LSRGSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECL-PLVMEPESGFYADPVVVL 1285
LSRG Q +V S LLR A Q+ + P V ++ + V+EPE G+Y+ P+ L
Sbjct: 551 LSRGQQIKVVSQLLRQAMKQDL--VMP---VVKTEGGEDYTGATVIEPEKGYYSVPIATL 605
Query: 1286 DFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMY 1345
DF SLYPS+M+A+NLC+ T L K S+ LG+ PD + + P G ++
Sbjct: 606 DFSSLYPSIMMAHNLCYTTLLQK---SQIEKLGLG---PD---------DFIKTPTGDLF 650
Query: 1346 VPPKVRKGVLPRLLEEILSTRIMVKQAIKKLA-P-SQQILHRIFNARQLALKLIANVTYG 1403
V VRKG+LP +LE +LS R K +KK P +Q+L A +++ + T
Sbjct: 651 VKSSVRKGLLPEILENLLSARKRAKAELKKETDPFKKQVLDGRQLALKISANSVYGFTGA 710
Query: 1404 YTAA--GFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTV 1457
+++ + +E + N + AKVIYGDTD V
Sbjct: 711 QVGKLPCLEISQSVTGFGRQMIEQTKQLVESRYTLDNGYQA-DAKVIYGDTDSVMV 765
Score = 109 (43.4 bits), Expect = 2.1e-36, Sum P(4) = 2.1e-36
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 6 PDSNIFSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHR 65
P S+ + + +D+Y+ + G +QG +VP++R++G T G C HIH
Sbjct: 84 PKSDTLIFQQIDLDYYLGAAVAGMP---GQVQG----KVPIVRMFGVTDNGNSVCCHIHG 136
Query: 66 ALPYLYVP 73
PY YVP
Sbjct: 137 FAPYFYVP 144
Score = 97 (39.2 bits), Expect = 2.1e-36, Sum P(4) = 2.1e-36
Identities = 28/120 (23%), Positives = 58/120 (48%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDSINVVALAFENDSDHAVEIYVLLYCKSESHQRSLVGI 1016
L +LS +++ R + P+P D + +A + + I + +S + S+VG
Sbjct: 314 LRVLSFDIECAGRKGVFPEPEVDPVIQIASMVQRQGEKEPFIRTVFTLQSCA---SIVG- 369
Query: 1017 PDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISR 1076
++ ++E + + + + + DPDI+ G++IQ L +L RAA L + + + R
Sbjct: 370 --SQILCFTQEKLMLQSWAEFMRTVDPDIITGYNIQNFDLPYLLNRAATLKVNMFPYLGR 427
Score = 60 (26.2 bits), Expect = 2.1e-36, Sum P(4) = 2.1e-36
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 130 KSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFR 165
+S Q E++I F ++F+VD N+ G + L K K++
Sbjct: 232 QSYQAFEANIDFEIRFMVDSNVVGCCWIELPKGKYQ 267
Score = 41 (19.5 bits), Expect = 1.2e-30, Sum P(4) = 1.2e-30
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 425 KDTCPELPFGGEIHSSEMVGAPGQKEPLI 453
K PE I + MV G+KEP I
Sbjct: 327 KGVFPEPEVDPVIQIASMVQRQGEKEPFI 355
Score = 41 (19.5 bits), Expect = 4.5e-23, Sum P(2) = 4.5e-23
Identities = 15/56 (26%), Positives = 22/56 (39%)
Query: 1075 SRTPLESKIAAGDSEISERGITDNMLAEPVV-AESLLAKDAIIEDEWGRTHASGLH 1129
S + E ++A D E + V+ L + D + W R HAS LH
Sbjct: 30 SPSQFEEELALFDEMDMEVESGEGQAGHDVIPVGDLFSTD--LNPRWKRPHASPLH 83
>POMBASE|SPBC336.04 [details] [associations]
symbol:cdc6 "DNA polymerase delta catalytic subunit Cdc6"
species:4896 "Schizosaccharomyces pombe" [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=TAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IC] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IMP] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=TAS] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0043625 "delta DNA
polymerase complex" evidence=TAS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 PomBase:SPBC336.04 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0000731
GO:GO:0043137 GO:GO:0010972 GO:GO:0003887 eggNOG:COG0417
Gene3D:3.90.1600.10 InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 EMBL:X59278 EMBL:L07734 EMBL:AB027796 PIR:S19661
PIR:T40242 PIR:T43266 RefSeq:NP_596124.1 ProteinModelPortal:P30316
IntAct:P30316 STRING:P30316 EnsemblFungi:SPBC336.04.1
GeneID:2540255 KEGG:spo:SPBC336.04 OrthoDB:EOG4B01XB
NextBio:20801385 Uniprot:P30316
Length = 1086
Score = 354 (129.7 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 109/355 (30%), Positives = 174/355 (49%)
Query: 1110 LAKDAIIEDE-WGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSI 1168
+AK+ + +G + + GR+ L++ ++M+ + KL Y++ AV L + +
Sbjct: 414 VAKETTFSSKAYGTRESKTTSIPGRLQLDMLQVMQRDFKLRSYSLNAVCSQFLGEQKEDV 473
Query: 1169 PFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLS 1228
+ ++T +G +R R Y + A L +M++L +E+ARV G+ F +L+
Sbjct: 474 HYSIITD-LQNGTADSRRRLAIYCLKDAYLPQRLMDKLMCFVNYTEMARVTGVPFNFLLA 532
Query: 1229 RGSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQ 1288
RG Q +V S L R A Q+ L + P N +V V+EP G+Y P+ LDF
Sbjct: 533 RGQQIKVISQLFRKA-LQHDLVV-P-NIRVNGTDEQYEGATVIEPIKGYYDTPIATLDFS 589
Query: 1289 SLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPP 1348
SLYPS+M A+NLC+ T L NT + + D+ + + PNG +V P
Sbjct: 590 SLYPSIMQAHNLCYTTLLDS------NTAELLKLKQDV--------DYSVTPNGDYFVKP 635
Query: 1349 KVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAA- 1407
VRKG+LP +L ++L+ R K +KK + + + RQLALK+ AN YG+T A
Sbjct: 636 HVRKGLLPIILADLLNARKKAKADLKK--ETDPFKKAVLDGRQLALKVSANSVYGFTGAT 693
Query: 1408 -GFSGRMPCAELADS----IVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTV 1457
G + + S +++ + +EK N A VIYGDTD V
Sbjct: 694 NGRLPCLAISSSVTSYGRQMIEKTKDVVEKRYRIEN-GYSHDAVVIYGDTDSVMV 747
Score = 93 (37.8 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 27/112 (24%), Positives = 52/112 (46%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDSINVVALAFENDSDHAVEIYVLLYCKSESHQRSLVGI 1016
L ++S +++ R + PDP D + +A D + ++C Q +VG
Sbjct: 294 LRIMSFDIECAGRKGVFPDPSIDPVIQIASIVTQYGD-STPFVRNVFCVDTCSQ--IVGT 350
Query: 1017 PDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGI 1068
+V+ + + S + K + DPD+L+G++I + +L +RA L I
Sbjct: 351 ---QVYEFQNQAEMLSSWSKFVRDVDPDVLIGYNICNFDIPYLLDRAKSLRI 399
Score = 81 (33.6 bits), Expect = 1.9e-33, Sum P(3) = 1.9e-33
Identities = 34/151 (22%), Positives = 66/151 (43%)
Query: 136 ESHIPFLLQFLVDYNLYGMGHLHL--SKLKFRHP--VPDAFFPRKFNYS---SKQASADF 188
ES+ +LL+F++D ++ GM +HL SK +FR+ V + NY S A +
Sbjct: 229 ESNTQYLLRFMIDCDVVGMNWIHLPASKYQFRYQNRVSNCQIEAWINYKDLISLPAEGQW 288
Query: 189 QVIGCGSYPMHLMGHQIKTLSGLNIKVFLSLKEMLQWMVCLIHCSATDIFASSIFLYDDC 248
+ P+ +M I+ + S+ ++Q + + F ++F D C
Sbjct: 289 SKMA----PLRIMSFDIECAGRKGVFPDPSIDPVIQIASIVTQYGDSTPFVRNVFCVDTC 344
Query: 249 VGDIVNQRLMMYTSLSQTRSD-VKMVQSLVP 278
IV ++ + + ++ S K V+ + P
Sbjct: 345 -SQIVGTQVYEFQNQAEMLSSWSKFVRDVDP 374
Score = 75 (31.5 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 30 DICYSSLQGGKVNE--VPVIRVYGSTPAGQKTCLHIHRALPYLYVPCADIPVQLRQE 84
DI + + + E VP IR++G T G +H+ LPY YV PV R E
Sbjct: 97 DIYFQQIDSEEFTEGSVPSIRLFGVTDNGNSILVHVVGFLPYFYVKA---PVGFRPE 150
>UNIPROTKB|I3LER4 [details] [associations]
symbol:I3LER4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR006134 InterPro:IPR012337 Pfam:PF00136
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 GeneTree:ENSGT00550000074640 EMBL:CU915528
Ensembl:ENSSSCT00000026918 Uniprot:I3LER4
Length = 127
Score = 379 (138.5 bits), Expect = 1.4e-33, P = 1.4e-33
Identities = 68/121 (56%), Positives = 95/121 (78%)
Query: 1189 VEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNY 1248
V++ + R + NL+++ QLD+I +TSE+AR+FGI F VL+RGSQYRVESM+LR+A NY
Sbjct: 2 VDHYISRVRGNLQMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNY 61
Query: 1249 LAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGK 1308
+ ++P Q + A +C+PL+MEPES FY++ V+VLDFQSLYPS++IAYN CF TCLG
Sbjct: 62 IPVTPSVQQRSQMRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGH 121
Query: 1309 I 1309
+
Sbjct: 122 V 122
>UNIPROTKB|Q8X0N7 [details] [associations]
symbol:B10H4.020 "DNA polymerase" species:5141 "Neurospora
crassa" [GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0006287 "base-excision
repair, gap-filling" evidence=IBA] [GO:0006297 "nucleotide-excision
repair, DNA gap filling" evidence=IBA] [GO:0007346 "regulation of
mitotic cell cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IBA] [GO:0043625 "delta DNA polymerase
complex" evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0003677
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0043137
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 GO:GO:0043625 OrthoDB:EOG4B01XB HSSP:Q56366
EMBL:AL670010 ProteinModelPortal:Q8X0N7 STRING:Q8X0N7
Uniprot:Q8X0N7
Length = 1104
Score = 360 (131.8 bits), Expect = 5.0e-33, Sum P(4) = 5.0e-33
Identities = 114/348 (32%), Positives = 177/348 (50%)
Query: 1119 EWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFA 1178
+ G + GR+ L++ +L++ + +L YT+ +V L + + ++T+ F
Sbjct: 435 QMGNRDTKATNTNGRLQLDMLQLVQRDYQLRSYTLNSVCSHFLGEQKEDVHHSMITELFE 494
Query: 1179 SGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESM 1238
P +R R Y + A L +M++L + +E+ARV G+ F +L+RG Q + S
Sbjct: 495 GTP-ESRRRLALYCLKDAYLPQRLMDKLSCLENYTEMARVTGVPFNFLLARGQQVKFLSQ 553
Query: 1239 LLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAY 1298
L R A Q L I P +S+ E V+EP G+Y P+ LDF SLYPS+M A+
Sbjct: 554 LFRKALEQK-LVI-PNLRPESSEEQYEGAT-VIEPTRGYYDVPIATLDFASLYPSIMQAH 610
Query: 1299 NLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDE-LLIPPNGVMYVPPKVRKGVLPR 1357
NLC+ T + K+ + R DL KDE ++ PNG M+V K RKG+L +
Sbjct: 611 NLCYTTLI------KKRDIE----RWDLK-----KDEDYIVTPNGDMFVTTKQRKGLLAQ 655
Query: 1358 LLEEILSTRIMVKQ--AIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAA--GFSGRM 1413
+LEE+LS R K+ A++K P ++ + N RQLALK+ AN YG T A G +
Sbjct: 656 ILEELLSARKQAKRELAVEK-DPFKKA---VLNGRQLALKVSANSVYGLTGATNGKLPCL 711
Query: 1414 PCAELADS----IVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTV 1457
A S +++ + +E+ + N A+VIYGDTD V
Sbjct: 712 EIASSVTSFGRQMIERTKKEVEERYTIAN-GYSHDAQVIYGDTDSVMV 758
Score = 89 (36.4 bits), Expect = 5.0e-33, Sum P(4) = 5.0e-33
Identities = 28/125 (22%), Positives = 57/125 (45%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDSINVVALAFENDSDHAVEIYVLLYCKSESHQRSLVGI 1016
L +LS +++ R + P+P++DS+ +A + + + +C + I
Sbjct: 306 LRILSFDIECAGRKGIFPEPQHDSVIQIANIVTKYGEKKPFVRNV-FCLDTTSP-----I 359
Query: 1017 PDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISR 1076
++ +E + + L DPDI++G++I +L +RA HL + + SR
Sbjct: 360 VATQILSFDREEDMLREWRNFLEQVDPDIIIGYNIANFDFPYLLDRAKHLKVKDFDFWSR 419
Query: 1077 TPLES 1081
T + S
Sbjct: 420 TRVRS 424
Score = 58 (25.5 bits), Expect = 5.0e-33, Sum P(4) = 5.0e-33
Identities = 20/71 (28%), Positives = 33/71 (46%)
Query: 24 PPIPG-YD-----ICYSSLQG--GKVNE-VPVIRVYGSTPAGQKTCLHIHRALPYLYVPC 74
PP+P Y+ +C+ S++ G ++ I+++G T G LH+ YLYV
Sbjct: 96 PPLPATYNPATDSLCFQSIEAEEGFLHGGQATIKLFGVTENGNSVLLHVKDFKHYLYVQA 155
Query: 75 ADIPVQLRQED 85
PV +D
Sbjct: 156 ---PVSFGPDD 163
Score = 45 (20.9 bits), Expect = 5.0e-33, Sum P(4) = 5.0e-33
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 123 KGGAVFDKSLQPHESHIPFLLQFLVDYNLYGM 154
KG D S+ + I +LL+F+VD ++ GM
Sbjct: 230 KGMWKSDGSIMTFDD-IQYLLRFMVDCSIAGM 260
>UNIPROTKB|E2R5W5 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0045004 "DNA replication proofreading"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0000109
"nucleotide-excision repair complex" evidence=IEA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0003682 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0000731 GO:GO:0003887 GO:GO:0006297
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 CTD:5424 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GeneTree:ENSGT00560000077365 GO:GO:0000109
EMBL:AAEX03000791 RefSeq:XP_851285.1 Ensembl:ENSCAFT00000004726
GeneID:610047 KEGG:cfa:610047 Uniprot:E2R5W5
Length = 1107
Score = 295 (108.9 bits), Expect = 8.0e-32, Sum P(4) = 8.0e-32
Identities = 97/338 (28%), Positives = 160/338 (47%)
Query: 1121 GRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASG 1180
GR + + + GR+ +++ +++ E KL YT+ AV+ L + + ++T +G
Sbjct: 442 GRRDSKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLGEQKEDVQHSIITD-LQNG 500
Query: 1181 PGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLL 1240
+ R R Y + A L L ++ +L ++ E+ARV G+ +LSRG Q +V S LL
Sbjct: 501 NDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLGYLLSRGQQVKVVSQLL 560
Query: 1241 RLAHTQNYLAISPGNHQVASQPAMECL-PLVMEPESGFYADPVVVLDFQSLYPSMMIAYN 1299
R A + L P V ++ + V+EP G+Y P+ LDF SLYPS+M+A+N
Sbjct: 561 RQAMREGLLM--P---VVKTEGGEDYTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHN 615
Query: 1300 LCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLL 1359
LC+ T L P LG++ KD+ + P G +V VRKG+LP++L
Sbjct: 616 LCYTTLLR---PGAAQKLGLT------------KDQFIKTPTGDEFVKTSVRKGLLPQIL 660
Query: 1360 EEILSTRIMVKQAI-KKLAP-SQQILHRIFNARQLALKLIANVTYGYTAA--GFSGRMPC 1415
E +LS R K + K+ P +Q+L A +++ + T
Sbjct: 661 ENLLSARKRAKAELAKETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSV 720
Query: 1416 AELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
+++ + +E + V AKV+YGDTD
Sbjct: 721 TGFGRQMIEKTKQLVESKYT-VENGYSANAKVVYGDTD 757
Score = 106 (42.4 bits), Expect = 8.0e-32, Sum P(4) = 8.0e-32
Identities = 26/73 (35%), Positives = 34/73 (46%)
Query: 3 DSQPDSNIFSVRIVSIDHYMAP--PIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTC 60
D Q + IF + IDHY+ P P+PG + VP++R +G T G C
Sbjct: 88 DPQKEPLIFQQ--LEIDHYVGPAQPLPGAPT-------PSRDSVPILRAFGVTDEGVSVC 138
Query: 61 LHIHRALPYLYVP 73
HIH PY Y P
Sbjct: 139 CHIHGFAPYFYTP 151
Score = 84 (34.6 bits), Expect = 8.0e-32, Sum P(4) = 8.0e-32
Identities = 34/151 (22%), Positives = 62/151 (41%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDS-INVVALAFE-NDSDHAVEIYVLLYCKSESHQRSLV 1014
L +LS +++ R + P+P D I + +L + + + + + L R
Sbjct: 310 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL--------RPCA 361
Query: 1015 GIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDI 1074
I KV +E L + + + DPD++ G++IQ L +L RA L + +
Sbjct: 362 PILGAKVQSYEREEELLQAWSTFIRTMDPDVITGYNIQNFDLPYLISRAQTLKVHTFPFL 421
Query: 1075 SRTP-LESKIAAGDSEISERGITDNMLAEPV 1104
R L S I + + G D+ + V
Sbjct: 422 GRVSGLRSNIRDSSFQSKQTGRRDSKVVSMV 452
Score = 59 (25.8 bits), Expect = 8.0e-32, Sum P(4) = 8.0e-32
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 131 SLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKF 164
S P+E+++ F ++F+VD ++ G L L K+
Sbjct: 240 SFAPYEANVDFEIRFMVDTDIVGCNWLELPAEKY 273
>UNIPROTKB|J9NS34 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 TIGRFAMs:TIGR00592 GeneTree:ENSGT00560000077365
OMA:MIEQTKQ EMBL:AAEX03000791 Ensembl:ENSCAFT00000045094
Uniprot:J9NS34
Length = 1131
Score = 295 (108.9 bits), Expect = 9.2e-32, Sum P(4) = 9.2e-32
Identities = 97/338 (28%), Positives = 160/338 (47%)
Query: 1121 GRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASG 1180
GR + + + GR+ +++ +++ E KL YT+ AV+ L + + ++T +G
Sbjct: 442 GRRDSKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLGEQKEDVQHSIITD-LQNG 500
Query: 1181 PGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLL 1240
+ R R Y + A L L ++ +L ++ E+ARV G+ +LSRG Q +V S LL
Sbjct: 501 NDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLGYLLSRGQQVKVVSQLL 560
Query: 1241 RLAHTQNYLAISPGNHQVASQPAMECL-PLVMEPESGFYADPVVVLDFQSLYPSMMIAYN 1299
R A + L P V ++ + V+EP G+Y P+ LDF SLYPS+M+A+N
Sbjct: 561 RQAMREGLLM--P---VVKTEGGEDYTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHN 615
Query: 1300 LCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLL 1359
LC+ T L P LG++ KD+ + P G +V VRKG+LP++L
Sbjct: 616 LCYTTLLR---PGAAQKLGLT------------KDQFIKTPTGDEFVKTSVRKGLLPQIL 660
Query: 1360 EEILSTRIMVKQAI-KKLAP-SQQILHRIFNARQLALKLIANVTYGYTAA--GFSGRMPC 1415
E +LS R K + K+ P +Q+L A +++ + T
Sbjct: 661 ENLLSARKRAKAELAKETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSV 720
Query: 1416 AELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
+++ + +E + V AKV+YGDTD
Sbjct: 721 TGFGRQMIEKTKQLVESKYT-VENGYSANAKVVYGDTD 757
Score = 106 (42.4 bits), Expect = 9.2e-32, Sum P(4) = 9.2e-32
Identities = 26/73 (35%), Positives = 34/73 (46%)
Query: 3 DSQPDSNIFSVRIVSIDHYMAP--PIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTC 60
D Q + IF + IDHY+ P P+PG + VP++R +G T G C
Sbjct: 88 DPQKEPLIFQQ--LEIDHYVGPAQPLPGAPT-------PSRDSVPILRAFGVTDEGVSVC 138
Query: 61 LHIHRALPYLYVP 73
HIH PY Y P
Sbjct: 139 CHIHGFAPYFYTP 151
Score = 84 (34.6 bits), Expect = 9.2e-32, Sum P(4) = 9.2e-32
Identities = 34/151 (22%), Positives = 62/151 (41%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDS-INVVALAFE-NDSDHAVEIYVLLYCKSESHQRSLV 1014
L +LS +++ R + P+P D I + +L + + + + + L R
Sbjct: 310 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL--------RPCA 361
Query: 1015 GIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDI 1074
I KV +E L + + + DPD++ G++IQ L +L RA L + +
Sbjct: 362 PILGAKVQSYEREEELLQAWSTFIRTMDPDVITGYNIQNFDLPYLISRAQTLKVHTFPFL 421
Query: 1075 SRTP-LESKIAAGDSEISERGITDNMLAEPV 1104
R L S I + + G D+ + V
Sbjct: 422 GRVSGLRSNIRDSSFQSKQTGRRDSKVVSMV 452
Score = 59 (25.8 bits), Expect = 9.2e-32, Sum P(4) = 9.2e-32
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 131 SLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKF 164
S P+E+++ F ++F+VD ++ G L L K+
Sbjct: 240 SFAPYEANVDFEIRFMVDTDIVGCNWLELPAEKY 273
>UNIPROTKB|P28339 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:9913 "Bos taurus" [GO:0006260 "DNA replication"
evidence=TAS] [GO:0005634 "nucleus" evidence=IC] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=TAS] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0051539 GO:GO:0004527 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 EMBL:M80395 IPI:IPI00706072 PIR:A39299
RefSeq:NP_776852.1 UniGene:Bt.4749 ProteinModelPortal:P28339
IntAct:P28339 STRING:P28339 PRIDE:P28339 GeneID:281990
KEGG:bta:281990 CTD:5424 HOVERGEN:HBG051395 KO:K02327
BindingDB:P28339 ChEMBL:CHEMBL4057 NextBio:20805858
InterPro:IPR025687 Pfam:PF14260 Uniprot:P28339
Length = 1106
Score = 296 (109.3 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 99/360 (27%), Positives = 168/360 (46%)
Query: 1099 MLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAE 1158
+L + S + + + + GR + + + GR+ +++ +++ E KL YT+ AV+
Sbjct: 419 LLGRVIGLRSNIRESSFQSRQTGRRDSKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSF 478
Query: 1159 TVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARV 1218
L + + ++T +G + R R Y + A L L ++ +L ++ E+ARV
Sbjct: 479 HFLGEQKEDVQHSIITD-LQNGNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEMARV 537
Query: 1219 FGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECL-PLVMEPESGF 1277
G+ +LSRG Q +V S LLR A Q L P V ++ + V+EP G+
Sbjct: 538 TGVPLGYLLSRGQQVKVVSQLLRQAMRQGLLM--P---VVKTEGGEDYTGATVIEPLKGY 592
Query: 1278 YADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELL 1337
Y P+ LDF SLYPS+M+A+NLC+ T L P LG++ +D+ +
Sbjct: 593 YDVPIATLDFSSLYPSIMMAHNLCYTTLLR---PGAAQKLGLT------------EDQFI 637
Query: 1338 IPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAI-KKLAP-SQQILHRIFNARQLALK 1395
P G +V VRKG+LP++LE +LS R K + K+ P +Q+L A +++
Sbjct: 638 KTPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQLALKVSAN 697
Query: 1396 LIANVTYGYTAA--GFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
+ T +++ + +E + V AKV+YGDTD
Sbjct: 698 SVYGFTGAQVGRLPCLEISQSVTGFGRQMIEKTKQLVETKYT-VENGYSTSAKVVYGDTD 756
Score = 109 (43.4 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 27/73 (36%), Positives = 35/73 (47%)
Query: 3 DSQPDSNIFSVRIVSIDHYMAP--PIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTC 60
D Q + IF + IDHY+AP P+PG + VP++R +G T G C
Sbjct: 87 DPQMEPLIFQQ--LEIDHYVAPARPLPG-------APPPSQDSVPILRAFGVTNEGVSVC 137
Query: 61 LHIHRALPYLYVP 73
HIH PY Y P
Sbjct: 138 CHIHGFAPYFYTP 150
Score = 79 (32.9 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 39/156 (25%), Positives = 67/156 (42%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDS-INVVALAFE-NDSDHAVEIYVLLYCKSESHQRSLV 1014
L +LS +++ R + P+P D I + +L + + + + + L R
Sbjct: 309 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL--------RPCA 360
Query: 1015 GIPDCKVFVCSKE---IHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHL---GI 1068
I KV +E + +S FI+I+ DPD++ G++IQ L +L RA L G
Sbjct: 361 PILGAKVQSYEREEDLLQAWSTFIRIM---DPDVITGYNIQNFDLPYLISRAQTLKVPGF 417
Query: 1069 GLLNDISRTPLESKIAAGDSEISERGITDNMLAEPV 1104
LL + L S I + + G D+ + V
Sbjct: 418 PLLGRV--IGLRSNIRESSFQSRQTGRRDSKVVSMV 451
Score = 58 (25.5 bits), Expect = 1.3e-31, Sum P(4) = 1.3e-31
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 131 SLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKF 164
S P+E+++ F ++F+VD ++ G L L K+
Sbjct: 239 SFAPYEANVDFEIRFMVDTDIVGCNWLELPAGKY 272
Score = 45 (20.9 bits), Expect = 7.4e-24, Sum P(3) = 7.4e-24
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 134 PHESHIPFLLQF-LVDYNLYGMGHLHLSKLKFRHPVPDAFFPRKFNYSSKQASA 186
P + +P L F + + + H+H F P P F P + ++ SA
Sbjct: 116 PSQDSVPILRAFGVTNEGVSVCCHIHGFAPYFYTPAPPGFGPEHLSELQRELSA 169
>WB|WBGene00008645 [details] [associations]
symbol:F10C2.4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0035188 "hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0009792 GO:GO:0035188 GO:GO:0006898
GO:GO:0007346 GO:GO:0002119 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0051539 GO:GO:0000910 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 EMBL:Z81497 PIR:T20698
RefSeq:NP_506017.1 ProteinModelPortal:P90829 SMR:P90829
STRING:P90829 PaxDb:P90829 EnsemblMetazoa:F10C2.4 GeneID:179652
KEGG:cel:CELE_F10C2.4 UCSC:F10C2.4 CTD:179652 WormBase:F10C2.4
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 InParanoid:P90829
OMA:MIEQTKQ NextBio:906306 GO:GO:0043625 Uniprot:P90829
Length = 1081
Score = 239 (89.2 bits), Expect = 1.5e-31, Sum P(5) = 1.5e-31
Identities = 61/199 (30%), Positives = 103/199 (51%)
Query: 1110 LAKDAIIED-EWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSI 1168
+ +DA I + G + + GRI+ +V +++ + KL YT+ +V+ L + +
Sbjct: 400 VVRDAAISSKQMGSRVNKSIDIHGRIIFDVLQVVLRDYKLRSYTLNSVSYQFLSEQKEDV 459
Query: 1169 PFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLS 1228
++ G + R R +Y + A L L ++++L I E+ARV G+ +L+
Sbjct: 460 EHNIIPD-LQRGDEQTRRRLAQYCLKDAYLPLRLLDKLMSIINYIEMARVTGVPMNFLLT 518
Query: 1229 RGSQYRVESMLLRLAHTQNY-LAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDF 1287
+G Q ++ SM+LR N+ L + N E V++P GFY +P+ LDF
Sbjct: 519 KGQQIKILSMMLRRCKQNNFFLPVIEANS--GDGEGYEGAT-VIDPIRGFYNEPIATLDF 575
Query: 1288 QSLYPSMMIAYNLCFCTCL 1306
SLYPS+MIA+NLC+ T L
Sbjct: 576 ASLYPSIMIAHNLCYTTLL 594
Score = 180 (68.4 bits), Expect = 1.5e-31, Sum P(5) = 1.5e-31
Identities = 45/133 (33%), Positives = 68/133 (51%)
Query: 1334 DELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLA 1393
++ + P+G + R+G+LP +LE+IL+ R K +K + ++N RQLA
Sbjct: 603 EDYIRTPSGQYFATKSKRRGLLPEILEDILAARKRAKNDMKN--EKDEFKRMVYNGRQLA 660
Query: 1394 LKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKW---------K 1444
LK+ AN YG+T A G++PC E++ S+ GR ++ V K
Sbjct: 661 LKISANSVYGFTGATV-GKLPCLEISQSVTAFGRKMIDMTKLEVERIYKKGALDGKCPAD 719
Query: 1445 AKVIYGDTDRYTV 1457
AKVIYGDTD V
Sbjct: 720 AKVIYGDTDSVMV 732
Score = 75 (31.5 bits), Expect = 1.5e-31, Sum P(5) = 1.5e-31
Identities = 31/137 (22%), Positives = 62/137 (45%)
Query: 960 LSIEVQAESRGDLRPDPRYDSINVVA--LAFENDSDHAVE-IYVLLYCKSESHQRSLVGI 1016
LS++++ R + P+ D I +A + E +++ V +VL C +VG
Sbjct: 283 LSLDIECIGRRGVFPEAIKDPIIQIANLVKIEGEAEPFVRNCFVLGTCAP------VVG- 335
Query: 1017 PDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISR 1076
+ C E L + + + DPDI+ G++I L ++ +RA L + ++ + R
Sbjct: 336 --SNIIQCVNEKVLLEKWAEFVREVDPDIITGYNILNFDLPYILDRAKVLSLPQVSHLGR 393
Query: 1077 TPLESKIAAGDSEISER 1093
+ + D+ IS +
Sbjct: 394 QKEKGSVVR-DAAISSK 409
Score = 49 (22.3 bits), Expect = 1.5e-31, Sum P(5) = 1.5e-31
Identities = 14/61 (22%), Positives = 25/61 (40%)
Query: 47 IRVYGSTPAGQKTCLHIHRALPYLYVPCADIPVQLRQEDDGYMHAISLALEKALKVKGSA 106
+++YG T +G C+ + P+ Y P E G + + A K +G +
Sbjct: 86 VKLYGVTKSGNSICVIVTDYFPHFYFQA---PQGFGVEHIGTAQSAICNMVAAAKRRGGS 142
Query: 107 G 107
G
Sbjct: 143 G 143
Score = 45 (20.9 bits), Expect = 1.5e-31, Sum P(5) = 1.5e-31
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 135 HESHIPFLLQFLVDYNLYGMGHLHLSKLKFR 165
+ES+I ++ FL N+ G G + + K R
Sbjct: 213 YESNINVIVMFLAKTNIVGCGWIEIPAGKCR 243
Score = 40 (19.1 bits), Expect = 1.2e-30, Sum P(5) = 1.2e-30
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 39 GKVNEVPVIRVYGSTPAGQKTCLHI 63
G +VP ++V GST A K + +
Sbjct: 171 GADTKVPFVKVSGSTEALHKARMEL 195
Score = 37 (18.1 bits), Expect = 3.0e-30, Sum P(4) = 3.0e-30
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 687 GGSVRDLMRRKRSYRESSEC-------EPPRVKRVNVTGEQKNAL 724
G S + ++RKR E +C E P V ++ TG + A+
Sbjct: 8 GSSFQPEVKRKRESDEFEQCYVSRFENELPSVPTIDKTGWARPAV 52
>UNIPROTKB|P90829 [details] [associations]
symbol:F10C2.4 "DNA polymerase delta catalytic subunit"
species:6239 "Caenorhabditis elegans" [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0043625 "delta DNA polymerase
complex" evidence=IBA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0009792 GO:GO:0035188 GO:GO:0006898
GO:GO:0007346 GO:GO:0002119 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0051539 GO:GO:0000910 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 EMBL:Z81497 PIR:T20698
RefSeq:NP_506017.1 ProteinModelPortal:P90829 SMR:P90829
STRING:P90829 PaxDb:P90829 EnsemblMetazoa:F10C2.4 GeneID:179652
KEGG:cel:CELE_F10C2.4 UCSC:F10C2.4 CTD:179652 WormBase:F10C2.4
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 InParanoid:P90829
OMA:MIEQTKQ NextBio:906306 GO:GO:0043625 Uniprot:P90829
Length = 1081
Score = 239 (89.2 bits), Expect = 1.5e-31, Sum P(5) = 1.5e-31
Identities = 61/199 (30%), Positives = 103/199 (51%)
Query: 1110 LAKDAIIED-EWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSI 1168
+ +DA I + G + + GRI+ +V +++ + KL YT+ +V+ L + +
Sbjct: 400 VVRDAAISSKQMGSRVNKSIDIHGRIIFDVLQVVLRDYKLRSYTLNSVSYQFLSEQKEDV 459
Query: 1169 PFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLS 1228
++ G + R R +Y + A L L ++++L I E+ARV G+ +L+
Sbjct: 460 EHNIIPD-LQRGDEQTRRRLAQYCLKDAYLPLRLLDKLMSIINYIEMARVTGVPMNFLLT 518
Query: 1229 RGSQYRVESMLLRLAHTQNY-LAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDF 1287
+G Q ++ SM+LR N+ L + N E V++P GFY +P+ LDF
Sbjct: 519 KGQQIKILSMMLRRCKQNNFFLPVIEANS--GDGEGYEGAT-VIDPIRGFYNEPIATLDF 575
Query: 1288 QSLYPSMMIAYNLCFCTCL 1306
SLYPS+MIA+NLC+ T L
Sbjct: 576 ASLYPSIMIAHNLCYTTLL 594
Score = 180 (68.4 bits), Expect = 1.5e-31, Sum P(5) = 1.5e-31
Identities = 45/133 (33%), Positives = 68/133 (51%)
Query: 1334 DELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLA 1393
++ + P+G + R+G+LP +LE+IL+ R K +K + ++N RQLA
Sbjct: 603 EDYIRTPSGQYFATKSKRRGLLPEILEDILAARKRAKNDMKN--EKDEFKRMVYNGRQLA 660
Query: 1394 LKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKW---------K 1444
LK+ AN YG+T A G++PC E++ S+ GR ++ V K
Sbjct: 661 LKISANSVYGFTGATV-GKLPCLEISQSVTAFGRKMIDMTKLEVERIYKKGALDGKCPAD 719
Query: 1445 AKVIYGDTDRYTV 1457
AKVIYGDTD V
Sbjct: 720 AKVIYGDTDSVMV 732
Score = 75 (31.5 bits), Expect = 1.5e-31, Sum P(5) = 1.5e-31
Identities = 31/137 (22%), Positives = 62/137 (45%)
Query: 960 LSIEVQAESRGDLRPDPRYDSINVVA--LAFENDSDHAVE-IYVLLYCKSESHQRSLVGI 1016
LS++++ R + P+ D I +A + E +++ V +VL C +VG
Sbjct: 283 LSLDIECIGRRGVFPEAIKDPIIQIANLVKIEGEAEPFVRNCFVLGTCAP------VVG- 335
Query: 1017 PDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISR 1076
+ C E L + + + DPDI+ G++I L ++ +RA L + ++ + R
Sbjct: 336 --SNIIQCVNEKVLLEKWAEFVREVDPDIITGYNILNFDLPYILDRAKVLSLPQVSHLGR 393
Query: 1077 TPLESKIAAGDSEISER 1093
+ + D+ IS +
Sbjct: 394 QKEKGSVVR-DAAISSK 409
Score = 49 (22.3 bits), Expect = 1.5e-31, Sum P(5) = 1.5e-31
Identities = 14/61 (22%), Positives = 25/61 (40%)
Query: 47 IRVYGSTPAGQKTCLHIHRALPYLYVPCADIPVQLRQEDDGYMHAISLALEKALKVKGSA 106
+++YG T +G C+ + P+ Y P E G + + A K +G +
Sbjct: 86 VKLYGVTKSGNSICVIVTDYFPHFYFQA---PQGFGVEHIGTAQSAICNMVAAAKRRGGS 142
Query: 107 G 107
G
Sbjct: 143 G 143
Score = 45 (20.9 bits), Expect = 1.5e-31, Sum P(5) = 1.5e-31
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 135 HESHIPFLLQFLVDYNLYGMGHLHLSKLKFR 165
+ES+I ++ FL N+ G G + + K R
Sbjct: 213 YESNINVIVMFLAKTNIVGCGWIEIPAGKCR 243
Score = 40 (19.1 bits), Expect = 1.2e-30, Sum P(5) = 1.2e-30
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 39 GKVNEVPVIRVYGSTPAGQKTCLHI 63
G +VP ++V GST A K + +
Sbjct: 171 GADTKVPFVKVSGSTEALHKARMEL 195
Score = 37 (18.1 bits), Expect = 3.0e-30, Sum P(4) = 3.0e-30
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 687 GGSVRDLMRRKRSYRESSEC-------EPPRVKRVNVTGEQKNAL 724
G S + ++RKR E +C E P V ++ TG + A+
Sbjct: 8 GSSFQPEVKRKRESDEFEQCYVSRFENELPSVPTIDKTGWARPAV 52
>UNIPROTKB|P28340 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IBA] [GO:0043625 "delta DNA
polymerase complex" evidence=IBA] [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000731 "DNA
synthesis involved in DNA repair" evidence=IDA;IMP] [GO:0003677
"DNA binding" evidence=IDA] [GO:0000084 "S phase of mitotic cell
cycle" evidence=IDA;TAS] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006287 "base-excision repair, gap-filling" evidence=IDA]
[GO:0000109 "nucleotide-excision repair complex" evidence=IDA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IC;IMP;TAS] [GO:0009411 "response to UV" evidence=TAS]
[GO:0000278 "mitotic cell cycle" evidence=TAS] [GO:0000722
"telomere maintenance via recombination" evidence=TAS] [GO:0000723
"telomere maintenance" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 EMBL:AY129569
GO:GO:0007346 GO:GO:0009411 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000722 GO:GO:0000731 Reactome:REACT_383 GO:GO:0006283
GO:GO:0043137 GO:GO:0003887 GO:GO:0032201 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
OMA:MIEQTKQ GO:GO:0043625 EMBL:M80397 EMBL:M81735 EMBL:BC008800
IPI:IPI00002894 PIR:A41618 RefSeq:NP_001243778.1 RefSeq:NP_002682.2
UniGene:Hs.279413 ProteinModelPortal:P28340 SMR:P28340
IntAct:P28340 MINT:MINT-1414678 STRING:P28340 PhosphoSite:P28340
DMDM:50403732 PaxDb:P28340 PRIDE:P28340 DNASU:5424
Ensembl:ENST00000440232 GeneID:5424 KEGG:hsa:5424 UCSC:uc002psb.4
GeneCards:GC19P050889 H-InvDB:HIX0202825 HGNC:HGNC:9175
HPA:CAB004375 MIM:174761 neXtProt:NX_P28340 PharmGKB:PA33496
PhylomeDB:P28340 BindingDB:P28340 ChEMBL:CHEMBL2735 GenomeRNAi:5424
NextBio:20985 PMAP-CutDB:P28340 Bgee:P28340 CleanEx:HS_POLD1
Genevestigator:P28340 GermOnline:ENSG00000062822 GO:GO:0000109
Uniprot:P28340
Length = 1107
Score = 294 (108.6 bits), Expect = 2.1e-31, Sum P(4) = 2.1e-31
Identities = 97/338 (28%), Positives = 159/338 (47%)
Query: 1121 GRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASG 1180
GR + + GR+ +++ +++ E KL YT+ AV+ L + + ++T +G
Sbjct: 442 GRRDTKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLGEQKEDVQHSIITD-LQNG 500
Query: 1181 PGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLL 1240
+ R R Y + A L L ++ +L ++ E+ARV G+ +LSRG Q +V S LL
Sbjct: 501 NDQTRRRLAVYCLKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLLSRGQQVKVVSQLL 560
Query: 1241 RLAHTQNYLAISPGNHQVASQPAMECL-PLVMEPESGFYADPVVVLDFQSLYPSMMIAYN 1299
R A + L P V S+ + V+EP G+Y P+ LDF SLYPS+M+A+N
Sbjct: 561 RQAMHEGLLM--P---VVKSEGGEDYTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHN 615
Query: 1300 LCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLL 1359
LC+ T L P LG++ +D+ + P G +V VRKG+LP++L
Sbjct: 616 LCYTTLLR---PGTAQKLGLT------------EDQFIRTPTGDEFVKTSVRKGLLPQIL 660
Query: 1360 EEILSTRIMVKQAI-KKLAP-SQQILHRIFNARQLALKLIANVTYGYTAA--GFSGRMPC 1415
E +LS R K + K+ P +Q+L A +++ + T
Sbjct: 661 ENLLSARKRAKAELAKETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSV 720
Query: 1416 AELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
+++ + +E + V AKV+YGDTD
Sbjct: 721 TGFGRQMIEKTKQLVESKYT-VENGYSTSAKVVYGDTD 757
Score = 107 (42.7 bits), Expect = 2.1e-31, Sum P(4) = 2.1e-31
Identities = 28/73 (38%), Positives = 35/73 (47%)
Query: 3 DSQPDSNIFSVRIVSIDHYMAP--PIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTC 60
D Q + IF + IDHY+ P P+PG +G VPV+R +G T G C
Sbjct: 88 DPQTEPLIFQQ--LEIDHYVGPAQPVPGGP---PPSRGS----VPVLRAFGVTDEGFSVC 138
Query: 61 LHIHRALPYLYVP 73
HIH PY Y P
Sbjct: 139 CHIHGFAPYFYTP 151
Score = 81 (33.6 bits), Expect = 2.1e-31, Sum P(4) = 2.1e-31
Identities = 38/154 (24%), Positives = 65/154 (42%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDS-INVVALAFE-NDSDHAVEIYVLLYCKSESHQRSLV 1014
L +LS +++ R + P+P D I + +L + + + + + L R
Sbjct: 310 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL--------RPCA 361
Query: 1015 GIPDCKVFVCSKE---IHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLL 1071
I KV KE + +S FI+I+ DPD++ G++IQ L +L RA L +
Sbjct: 362 PILGAKVQSYEKEEDLLQAWSTFIRIM---DPDVITGYNIQNFDLPYLISRAQTLKVQTF 418
Query: 1072 NDISRTP-LESKIAAGDSEISERGITDNMLAEPV 1104
+ R L S I + + G D + V
Sbjct: 419 PFLGRVAGLCSNIRDSSFQSKQTGRRDTKVVSMV 452
Score = 58 (25.5 bits), Expect = 2.1e-31, Sum P(4) = 2.1e-31
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 131 SLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKF 164
S P+E+++ F ++F+VD ++ G L L K+
Sbjct: 240 SFAPYEANVDFEIRFMVDTDIVGCNWLELPAGKY 273
>SGD|S000002260 [details] [associations]
symbol:POL3 "Catalytic subunit of DNA polymerase delta"
species:4932 "Saccharomyces cerevisiae" [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=NAS]
[GO:0006273 "lagging strand elongation" evidence=TAS] [GO:0006284
"base-excision repair" evidence=TAS] [GO:0043625 "delta DNA
polymerase complex" evidence=IBA;TAS] [GO:0006301 "postreplication
repair" evidence=TAS] [GO:0006272 "leading strand elongation"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=TAS] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IGI] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;IMP;IDA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IDA] [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0006287 "base-excision repair, gap-filling"
evidence=IBA] [GO:0008296 "3'-5'-exodeoxyribonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006278 "RNA-dependent DNA replication"
evidence=IDA] [GO:0004518 "nuclease activity" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 SGD:S000002260 GO:GO:0007346 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0051539
GO:GO:0006298 SUPFAM:SSF53098 GO:GO:0006278 GO:GO:0000084
GO:GO:0006301 EMBL:X95644 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
GO:GO:0006272 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 GeneTree:ENSGT00560000077365
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 OrthoDB:EOG4B01XB
EMBL:X15477 EMBL:X61920 EMBL:Z74150 PIR:S67644 RefSeq:NP_010181.2
PDB:3IAY PDBsum:3IAY ProteinModelPortal:P15436 SMR:P15436
DIP:DIP-2524N IntAct:P15436 MINT:MINT-2781941 STRING:P15436
PaxDb:P15436 PeptideAtlas:P15436 EnsemblFungi:YDL102W GeneID:851456
KEGG:sce:YDL102W CYGD:YDL102w NextBio:968726 Genevestigator:P15436
GermOnline:YDL102W GO:GO:0008310 Uniprot:P15436
Length = 1097
Score = 356 (130.4 bits), Expect = 2.2e-31, Sum P(4) = 2.2e-31
Identities = 104/354 (29%), Positives = 173/354 (48%)
Query: 1112 KDAIIEDE-WGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPF 1170
K+++ + +G +++ GR+ L++ + ++ E KL YT+ AV+ L + + +
Sbjct: 437 KESVFSSKAYGTRETKNVNIDGRLQLDLLQFIQREYKLRSYTLNAVSAHFLGEQKEDVHY 496
Query: 1171 RVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRG 1230
+++ +G R R Y + A L L +M +L + +E+ARV G+ F +L+RG
Sbjct: 497 SIISD-LQNGDSETRRRLAVYCLKDAYLPLRLMEKLMALVNYTEMARVTGVPFSYLLARG 555
Query: 1231 SQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSL 1290
Q +V S L R + + P AS E V+EP G+Y P+ LDF SL
Sbjct: 556 QQIKVVSQLFRKCLEID--TVIPNMQSQASDDQYEGAT-VIEPIRGYYDVPIATLDFNSL 612
Query: 1291 YPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKV 1350
YPS+M+A+NLC+ T K + N L+ + ++ +I PNG +V K
Sbjct: 613 YPSIMMAHNLCYTTLCNKATVERLN-------------LK-IDEDYVITPNGDYFVTTKR 658
Query: 1351 RKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAA--G 1408
R+G+LP +L+E++S R K+ ++ + N RQLALK+ AN YG+T A G
Sbjct: 659 RRGILPIILDELISARKRAKKDLRD--EKDPFKRDVLNGRQLALKISANSVYGFTGATVG 716
Query: 1409 FSGRMPCAELADS-----IVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTV 1457
+ + + I++ + EK + K A V+YGDTD V
Sbjct: 717 KLPCLAISSSVTAYGRTMILKTKTAVQEKYC--IKNGYKHDAVVVYGDTDSVMV 768
Score = 80 (33.2 bits), Expect = 2.2e-31, Sum P(4) = 2.2e-31
Identities = 31/140 (22%), Positives = 59/140 (42%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDSI----NVVALAFENDSDHAVEIYVLLYCKSESHQRS 1012
L ++S +++ R + P+P YD + NVV++A ++ L C
Sbjct: 315 LRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAK-KPFIRNVFTLNTCSP------ 367
Query: 1013 LVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLN 1072
I +F + E + S++ + DPD+++G++ + +L RA L + N
Sbjct: 368 ---ITGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKV---N 421
Query: 1073 DISRTPLESKIAAGDSEISE 1092
D P ++ EI E
Sbjct: 422 DF---PYFGRLKTVKQEIKE 438
Score = 57 (25.1 bits), Expect = 2.2e-31, Sum P(4) = 2.2e-31
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 34 SSLQGGK-VNEVPVIRVYGSTPAGQKTCLHIHRALPYLYVPCADIPVQLRQED-DGYMHA 91
S L G K N V+R +G T G ++ YLYVP + QE + ++H
Sbjct: 123 SVLNGIKDENTSTVVRFFGVTSEGHSVLCNVTGFKNYLYVPAPNSSDANDQEQINKFVHY 182
Query: 92 ISLALEKAL 100
++ + A+
Sbjct: 183 LNETFDHAI 191
Score = 44 (20.5 bits), Expect = 2.5e-30, Sum P(3) = 2.5e-30
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 508 EKANTDYERESQKECQDI-LDSIEDEVNV-DGLEERNSSTVDPSNHPETSSHKKIPQIDG 565
+K TD++ DI I+ E +V +G+++ N+STV + H + + G
Sbjct: 100 KKLPTDFD----PSLYDISFQQIDAEQSVLNGIKDENTSTVVRFFGVTSEGHSVLCNVTG 155
Query: 566 SSDDLYL 572
+ LY+
Sbjct: 156 FKNYLYV 162
Score = 43 (20.2 bits), Expect = 2.2e-31, Sum P(4) = 2.2e-31
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 138 HIPFLLQFLVDYNLYGMGHLHLSKLKF 164
+I + L+ +VD + GM + L K K+
Sbjct: 251 NIAYTLRLMVDCGIVGMSWITLPKGKY 277
>UNIPROTKB|F1RH32 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9823 "Sus scrofa"
[GO:0045004 "DNA replication proofreading" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0000109 "nucleotide-excision repair
complex" evidence=IEA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0003682
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0000731
GO:GO:0003887 GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424
KO:K02327 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00560000077365 OMA:MIEQTKQ GO:GO:0000109
EMBL:FP102476 RefSeq:XP_003127412.2 Ensembl:ENSSSCT00000003572
GeneID:100525752 KEGG:ssc:100525752 Uniprot:F1RH32
Length = 1107
Score = 290 (107.1 bits), Expect = 2.8e-31, Sum P(4) = 2.8e-31
Identities = 96/338 (28%), Positives = 160/338 (47%)
Query: 1121 GRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASG 1180
GR + + + GR+ +++ +++ E KL YT+ AV+ L + + ++T +G
Sbjct: 442 GRRDSKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLGEQKEDVQHSIITD-LQNG 500
Query: 1181 PGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLL 1240
+ R R Y + A L L ++ +L ++ E+ARV G+ +LSRG Q +V S LL
Sbjct: 501 NDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLGYLLSRGQQVKVVSQLL 560
Query: 1241 RLAHTQNYLAISPGNHQVASQPAMECL-PLVMEPESGFYADPVVVLDFQSLYPSMMIAYN 1299
R A + L P V ++ + V+EP G+Y P+ LDF SLYPS+M+A+N
Sbjct: 561 RQAMREGLLM--P---VVKTEGGEDYTGATVIEPLKGYYDVPITTLDFSSLYPSIMMAHN 615
Query: 1300 LCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLL 1359
LC+ T L P LG+++ D+ + P G +V VRKG+LP++L
Sbjct: 616 LCYTTLLR---PGAAQKLGLTA------------DQFIKTPTGDEFVKTSVRKGLLPQIL 660
Query: 1360 EEILSTRIMVKQAI-KKLAP-SQQILHRIFNARQLALKLIANVTYGYTAA--GFSGRMPC 1415
E +LS R K + K+ P +Q+L A +++ + T
Sbjct: 661 ENLLSARKRAKAELAKETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSV 720
Query: 1416 AELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
+++ + +E + V AKV+YGDTD
Sbjct: 721 TGFGRQMIEKTKQLVESKYT-VENGYGTSAKVVYGDTD 757
Score = 107 (42.7 bits), Expect = 2.8e-31, Sum P(4) = 2.8e-31
Identities = 28/73 (38%), Positives = 34/73 (46%)
Query: 3 DSQPDSNIFSVRIVSIDHYMAP--PIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTC 60
D Q + IF + IDHY+ P P+PG S VPV+R +G T G C
Sbjct: 88 DPQTEPLIFQQ--LEIDHYVGPARPLPGAPPPSQS-------SVPVLRAFGVTDDGVSVC 138
Query: 61 LHIHRALPYLYVP 73
HIH PY Y P
Sbjct: 139 CHIHGFAPYFYTP 151
Score = 85 (35.0 bits), Expect = 2.8e-31, Sum P(4) = 2.8e-31
Identities = 36/154 (23%), Positives = 67/154 (43%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDS-INVVALAFE-NDSDHAVEIYVLLYCKSESHQRSLV 1014
L +LS +++ R + P+P D I + +L + + + + + L R
Sbjct: 310 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL--------RPCA 361
Query: 1015 GIPDCKVFVCSKE---IHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLL 1071
I KV +E + +S+FI+++ DPD++ G++IQ L +L RA L +
Sbjct: 362 PILGAKVQSYEREEDLLQAWSNFIRVM---DPDVITGYNIQNFDLPYLISRAQTLKVQTF 418
Query: 1072 NDISRTP-LESKIAAGDSEISERGITDNMLAEPV 1104
+ R L S I + + G D+ + V
Sbjct: 419 PFLGRVSGLRSNIRDSSFQSKQTGRRDSKVVSMV 452
Score = 57 (25.1 bits), Expect = 2.8e-31, Sum P(4) = 2.8e-31
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 131 SLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKF 164
S P+E+++ F ++F+VD ++ G L L K+
Sbjct: 240 SFAPYEANVDFEIRFMVDADVVGCNWLELPAGKY 273
Score = 48 (22.0 bits), Expect = 3.9e-24, Sum P(3) = 3.9e-24
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 134 PHESHIPFLLQF-LVDYNLYGMGHLHLSKLKFRHPVPDAFFPRKFNYSSKQASA 186
P +S +P L F + D + H+H F P P F P + ++ +A
Sbjct: 117 PSQSSVPVLRAFGVTDDGVSVCCHIHGFAPYFYTPAPPGFGPEHLSDLQRELNA 170
Score = 40 (19.1 bits), Expect = 2.6e-23, Sum P(3) = 2.6e-23
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 758 ENMESPSPFDTKKEDASVSVGDWKADNCKESKFDATSVEPRELQSDHP 805
E ME+ ++E+ S + D +F T+++PR L+ P
Sbjct: 42 EEMEAEHRLQEQEEEELQSALEGAVDG----QFSVTAIDPRWLRPTPP 85
>UNIPROTKB|E1BNZ6 [details] [associations]
symbol:E1BNZ6 "DNA polymerase" species:9913 "Bos taurus"
[GO:0045004 "DNA replication proofreading" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0000109 "nucleotide-excision repair
complex" evidence=IEA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0003682
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0000731
GO:GO:0003887 GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 IPI:IPI00706072
GeneTree:ENSGT00560000077365 OMA:MIEQTKQ GO:GO:0000109
EMBL:DAAA02047499 EMBL:DAAA02047500 Ensembl:ENSBTAT00000014714
Uniprot:E1BNZ6
Length = 984
Score = 296 (109.3 bits), Expect = 5.1e-31, Sum P(4) = 5.1e-31
Identities = 99/360 (27%), Positives = 168/360 (46%)
Query: 1099 MLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAE 1158
+L + S + + + + GR + + + GR+ +++ +++ E KL YT+ AV+
Sbjct: 419 LLGRVIGLRSNIRESSFQSRQTGRRDSKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSF 478
Query: 1159 TVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARV 1218
L + + ++T +G + R R Y + A L L ++ +L ++ E+ARV
Sbjct: 479 HFLGEQKEDVQHSIITD-LQNGNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEMARV 537
Query: 1219 FGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECL-PLVMEPESGF 1277
G+ +LSRG Q +V S LLR A Q L P V ++ + V+EP G+
Sbjct: 538 TGVPLGYLLSRGQQVKVVSQLLRQAMRQGLLM--P---VVKTEGGEDYTGATVIEPLKGY 592
Query: 1278 YADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELL 1337
Y P+ LDF SLYPS+M+A+NLC+ T L P LG++ +D+ +
Sbjct: 593 YDVPIATLDFSSLYPSIMMAHNLCYTTLLR---PGAAQKLGLT------------EDQFI 637
Query: 1338 IPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAI-KKLAP-SQQILHRIFNARQLALK 1395
P G +V VRKG+LP++LE +LS R K + K+ P +Q+L A +++
Sbjct: 638 KTPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQLALKVSAN 697
Query: 1396 LIANVTYGYTAA--GFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
+ T +++ + +E + V AKV+YGDTD
Sbjct: 698 SVYGFTGAQVGRLPCLEISQSVTGFGRQMIEKTKQLVETKYT-VENGYSTSAKVVYGDTD 756
Score = 110 (43.8 bits), Expect = 5.1e-31, Sum P(4) = 5.1e-31
Identities = 27/73 (36%), Positives = 35/73 (47%)
Query: 3 DSQPDSNIFSVRIVSIDHYMAP--PIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTC 60
D Q + IF + IDHY+AP P+PG + VP++R +G T G C
Sbjct: 87 DPQMEPLIFQQ--LEIDHYVAPARPLPG-------APPPSQDSVPILRAFGVTDEGVSVC 137
Query: 61 LHIHRALPYLYVP 73
HIH PY Y P
Sbjct: 138 CHIHGFAPYFYTP 150
Score = 69 (29.3 bits), Expect = 5.1e-31, Sum P(4) = 5.1e-31
Identities = 24/77 (31%), Positives = 37/77 (48%)
Query: 1031 FSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHL---GIGLLNDISRTPLESKIAAGD 1087
+S FI+I+ DPD++ G++IQ L +L RA L G LL + L S I
Sbjct: 380 WSTFIRIM---DPDVITGYNIQNFDLPYLISRAQTLKVPGFPLLGRV--IGLRSNIRESS 434
Query: 1088 SEISERGITDNMLAEPV 1104
+ + G D+ + V
Sbjct: 435 FQSRQTGRRDSKVVSMV 451
Score = 58 (25.5 bits), Expect = 5.1e-31, Sum P(4) = 5.1e-31
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 131 SLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKF 164
S P+E+++ F ++F+VD ++ G L L K+
Sbjct: 239 SFAPYEANVDFEIRFMVDTDIVGCNWLELPAGKY 272
Score = 50 (22.7 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 134 PHESHIPFLLQF-LVDYNLYGMGHLHLSKLKFRHPVPDAFFPRKFNYSSKQASA 186
P + +P L F + D + H+H F P P F P + ++ SA
Sbjct: 116 PSQDSVPILRAFGVTDEGVSVCCHIHGFAPYFYTPAPPGFGPEHLSELQRELSA 169
>RGD|621839 [details] [associations]
symbol:Pold1 "polymerase (DNA directed), delta 1, catalytic
subunit" species:10116 "Rattus norvegicus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=IEA;ISO;IBA] [GO:0000109
"nucleotide-excision repair complex" evidence=IEA;ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO;IMP;IDA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO;IBA] [GO:0006260
"DNA replication" evidence=ISO] [GO:0006261 "DNA-dependent DNA
replication" evidence=IMP;IDA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IEA;ISO;IBA] [GO:0006297 "nucleotide-excision
repair, DNA gap filling" evidence=IEA;ISO;IBA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IBA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA;ISO;IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IBA] [GO:0043625 "delta DNA
polymerase complex" evidence=IC;IBA] [GO:0045004 "DNA replication
proofreading" evidence=IEA;ISO;IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 RGD:621839 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
GO:GO:0043625 GO:GO:0000109 OrthoDB:EOG4KWJS2 EMBL:AJ222691
IPI:IPI00197951 RefSeq:NP_067694.1 UniGene:Rn.88690
ProteinModelPortal:O54747 STRING:O54747 PRIDE:O54747 GeneID:59294
KEGG:rno:59294 UCSC:RGD:621839 InParanoid:O54747 NextBio:611817
Genevestigator:O54747 GermOnline:ENSRNOG00000019681 Uniprot:O54747
Length = 1103
Score = 287 (106.1 bits), Expect = 1.2e-30, Sum P(4) = 1.2e-30
Identities = 97/338 (28%), Positives = 161/338 (47%)
Query: 1121 GRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASG 1180
GR + + + GR+ +++ +++ E KL YT+ AV+ L + + ++T +G
Sbjct: 438 GRRDSKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLGEQKEDVQHSIITD-LQNG 496
Query: 1181 PGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLL 1240
+ R R Y + A L L ++ +L ++ E+ARV G+ +LSRG Q +V S LL
Sbjct: 497 NEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLGYLLSRGQQVKVVSQLL 556
Query: 1241 RLAHTQNYLAISPGNHQVASQPAMECL-PLVMEPESGFYADPVVVLDFQSLYPSMMIAYN 1299
R A + L P V ++ + V+EP G+Y P+ LDF SLYPS+M+A+N
Sbjct: 557 RQAMREGLLM--P---VVKTEGGEDYTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHN 611
Query: 1300 LCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLL 1359
LC+ T L P LG+ +PD E + P G +V VRKG+LP++L
Sbjct: 612 LCYTTLLR---PGAAQKLGL---KPD---------EFIKTPTGDEFVKASVRKGLLPQIL 656
Query: 1360 EEILSTRIMVKQAI-KKLAP-SQQILHRIFNARQLALKLIANVTYGYTAA--GFSGRMPC 1415
E +LS R K + ++ P +Q+L A +++ + T
Sbjct: 657 ENLLSARKRAKAELAQETDPLRRQVLDGRQLALKVSPNSVYGFTGAQVGKLPCLEISQSV 716
Query: 1416 AELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
+++ + +E + N + AKV+YGDTD
Sbjct: 717 TGFGRQMIEKTKQLVETKYTLENGYDA-NAKVVYGDTD 753
Score = 101 (40.6 bits), Expect = 1.2e-30, Sum P(4) = 1.2e-30
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 16 VSIDHYM--APPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPYLYVP 73
+ IDHY+ +PP+P + N VP++R +G T G C HIH PY Y P
Sbjct: 95 LEIDHYVGTSPPLP------EGPPASR-NSVPILRAFGVTDEGFSVCCHIHGFAPYFYTP 147
Score = 87 (35.7 bits), Expect = 1.2e-30, Sum P(4) = 1.2e-30
Identities = 35/142 (24%), Positives = 60/142 (42%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDS-INVVALAFE-NDSDHAVEIYVLLYCKSESHQRSLV 1014
L +LS +++ R + P+P D I + +L + + + + + L R
Sbjct: 306 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL--------RPCA 357
Query: 1015 GIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDI 1074
I KV +E L + + + DPD++ G++IQ L +L RA L + +
Sbjct: 358 PILGAKVQSYEREEDLLQAWATFILAMDPDVITGYNIQNFDLPYLISRAQTLKVDRFPFL 417
Query: 1075 SR-TPLESKIAAGDSEISERGI 1095
R T L S I DS R +
Sbjct: 418 GRVTGLRSNIR--DSSFQSRQV 437
Score = 58 (25.5 bits), Expect = 1.2e-30, Sum P(4) = 1.2e-30
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 131 SLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKF 164
S P+E+++ F ++F+VD ++ G L L K+
Sbjct: 236 SFAPYEANVDFEIRFMVDADIVGCNWLELPAGKY 269
Score = 38 (18.4 bits), Expect = 7.8e-05, Sum P(4) = 7.8e-05
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 1223 FFSVLSRGSQYRVESMLLRLAHTQ 1246
F +L G R ES+LLR HT+
Sbjct: 966 FEPILGEG---RAESVLLRGDHTR 986
>UNIPROTKB|O54747 [details] [associations]
symbol:Pold1 "DNA polymerase delta catalytic subunit"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 RGD:621839 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
GO:GO:0043625 GO:GO:0000109 OrthoDB:EOG4KWJS2 EMBL:AJ222691
IPI:IPI00197951 RefSeq:NP_067694.1 UniGene:Rn.88690
ProteinModelPortal:O54747 STRING:O54747 PRIDE:O54747 GeneID:59294
KEGG:rno:59294 UCSC:RGD:621839 InParanoid:O54747 NextBio:611817
Genevestigator:O54747 GermOnline:ENSRNOG00000019681 Uniprot:O54747
Length = 1103
Score = 287 (106.1 bits), Expect = 1.2e-30, Sum P(4) = 1.2e-30
Identities = 97/338 (28%), Positives = 161/338 (47%)
Query: 1121 GRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASG 1180
GR + + + GR+ +++ +++ E KL YT+ AV+ L + + ++T +G
Sbjct: 438 GRRDSKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLGEQKEDVQHSIITD-LQNG 496
Query: 1181 PGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLL 1240
+ R R Y + A L L ++ +L ++ E+ARV G+ +LSRG Q +V S LL
Sbjct: 497 NEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLGYLLSRGQQVKVVSQLL 556
Query: 1241 RLAHTQNYLAISPGNHQVASQPAMECL-PLVMEPESGFYADPVVVLDFQSLYPSMMIAYN 1299
R A + L P V ++ + V+EP G+Y P+ LDF SLYPS+M+A+N
Sbjct: 557 RQAMREGLLM--P---VVKTEGGEDYTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHN 611
Query: 1300 LCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLL 1359
LC+ T L P LG+ +PD E + P G +V VRKG+LP++L
Sbjct: 612 LCYTTLLR---PGAAQKLGL---KPD---------EFIKTPTGDEFVKASVRKGLLPQIL 656
Query: 1360 EEILSTRIMVKQAI-KKLAP-SQQILHRIFNARQLALKLIANVTYGYTAA--GFSGRMPC 1415
E +LS R K + ++ P +Q+L A +++ + T
Sbjct: 657 ENLLSARKRAKAELAQETDPLRRQVLDGRQLALKVSPNSVYGFTGAQVGKLPCLEISQSV 716
Query: 1416 AELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
+++ + +E + N + AKV+YGDTD
Sbjct: 717 TGFGRQMIEKTKQLVETKYTLENGYDA-NAKVVYGDTD 753
Score = 101 (40.6 bits), Expect = 1.2e-30, Sum P(4) = 1.2e-30
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 16 VSIDHYM--APPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPYLYVP 73
+ IDHY+ +PP+P + N VP++R +G T G C HIH PY Y P
Sbjct: 95 LEIDHYVGTSPPLP------EGPPASR-NSVPILRAFGVTDEGFSVCCHIHGFAPYFYTP 147
Score = 87 (35.7 bits), Expect = 1.2e-30, Sum P(4) = 1.2e-30
Identities = 35/142 (24%), Positives = 60/142 (42%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDS-INVVALAFE-NDSDHAVEIYVLLYCKSESHQRSLV 1014
L +LS +++ R + P+P D I + +L + + + + + L R
Sbjct: 306 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL--------RPCA 357
Query: 1015 GIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDI 1074
I KV +E L + + + DPD++ G++IQ L +L RA L + +
Sbjct: 358 PILGAKVQSYEREEDLLQAWATFILAMDPDVITGYNIQNFDLPYLISRAQTLKVDRFPFL 417
Query: 1075 SR-TPLESKIAAGDSEISERGI 1095
R T L S I DS R +
Sbjct: 418 GRVTGLRSNIR--DSSFQSRQV 437
Score = 58 (25.5 bits), Expect = 1.2e-30, Sum P(4) = 1.2e-30
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 131 SLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKF 164
S P+E+++ F ++F+VD ++ G L L K+
Sbjct: 236 SFAPYEANVDFEIRFMVDADIVGCNWLELPAGKY 269
Score = 38 (18.4 bits), Expect = 7.8e-05, Sum P(4) = 7.8e-05
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 1223 FFSVLSRGSQYRVESMLLRLAHTQ 1246
F +L G R ES+LLR HT+
Sbjct: 966 FEPILGEG---RAESVLLRGDHTR 986
>MGI|MGI:97741 [details] [associations]
symbol:Pold1 "polymerase (DNA directed), delta 1, catalytic
subunit" species:10090 "Mus musculus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=ISO;IBA] [GO:0000109
"nucleotide-excision repair complex" evidence=ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISO;IBA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IBA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006260 "DNA replication"
evidence=ISO] [GO:0006261 "DNA-dependent DNA replication"
evidence=ISO] [GO:0006287 "base-excision repair, gap-filling"
evidence=ISO;IMP] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=ISO;IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IMP] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 MGI:MGI:97741 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 GO:GO:0000109 EMBL:Z21848 EMBL:AF024570 EMBL:AK167569
EMBL:AK168967 EMBL:AK169040 IPI:IPI00323143 PIR:S40243
RefSeq:NP_035261.3 UniGene:Mm.16549 ProteinModelPortal:P52431
SMR:P52431 IntAct:P52431 STRING:P52431 PhosphoSite:P52431
PaxDb:P52431 PRIDE:P52431 Ensembl:ENSMUST00000049343 GeneID:18971
KEGG:mmu:18971 InParanoid:Q3TFX6 OrthoDB:EOG4KWJS2 ChiTaRS:POLD1
NextBio:295320 PMAP-CutDB:P52431 Bgee:P52431 Genevestigator:P52431
GermOnline:ENSMUSG00000038644 Uniprot:P52431
Length = 1105
Score = 291 (107.5 bits), Expect = 1.4e-30, Sum P(4) = 1.4e-30
Identities = 97/337 (28%), Positives = 159/337 (47%)
Query: 1121 GRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASG 1180
GR + + + GR+ +++ +++ E KL YT+ AV+ L + + ++T +G
Sbjct: 440 GRRDSKVISMVGRVQMDMLQVLLREHKLRSYTLNAVSFHFLGEQKEDVQHSIITD-LQNG 498
Query: 1181 PGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLL 1240
+ R R Y + A L L ++ +L ++ E+ARV G+ +L+RG Q +V S LL
Sbjct: 499 NEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLGYLLTRGQQVKVVSQLL 558
Query: 1241 RLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNL 1300
R A Q L P S+ V+EP G+Y P+ LDF SLYPS+M+A+NL
Sbjct: 559 RQAMRQGLLM--PVVKTEGSEDYTGAT--VIEPLKGYYDVPIATLDFSSLYPSIMMAHNL 614
Query: 1301 CFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLE 1360
C+ T L P LG+ +PD E + P G +V VRKG+LP++LE
Sbjct: 615 CYTTLLR---PGAAQKLGL---KPD---------EFIKTPTGDEFVKSSVRKGLLPQILE 659
Query: 1361 EILSTRIMVKQAI-KKLAP-SQQILHRIFNARQLALKLIANVTYGYTAA--GFSGRMPCA 1416
+LS R K + ++ P +Q+L A +++ + T
Sbjct: 660 NLLSARKRAKAELAQETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVT 719
Query: 1417 ELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
+++ + +E + N + AKV+YGDTD
Sbjct: 720 GFGRQMIEKTKQLVESKYTVENGYDA-NAKVVYGDTD 755
Score = 96 (38.9 bits), Expect = 1.4e-30, Sum P(4) = 1.4e-30
Identities = 22/60 (36%), Positives = 29/60 (48%)
Query: 16 VSIDHYM--APPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPYLYVP 73
+ IDHY+ APP+P + N VP++R +G T G C HI PY Y P
Sbjct: 97 LEIDHYVGSAPPLPEGPL-------PSRNSVPILRAFGVTDEGFSVCCHIQGFAPYFYTP 149
Score = 87 (35.7 bits), Expect = 1.4e-30, Sum P(4) = 1.4e-30
Identities = 35/142 (24%), Positives = 60/142 (42%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDS-INVVALAFE-NDSDHAVEIYVLLYCKSESHQRSLV 1014
L +LS +++ R + P+P D I + +L + + + + + L R
Sbjct: 308 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL--------RPCA 359
Query: 1015 GIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDI 1074
I KV +E L + + + DPD++ G++IQ L +L RA L + +
Sbjct: 360 PILGAKVQSYEREEDLLQAWADFILAMDPDVITGYNIQNFDLPYLISRAQALKVDRFPFL 419
Query: 1075 SR-TPLESKIAAGDSEISERGI 1095
R T L S I DS R +
Sbjct: 420 GRVTGLRSNIR--DSSFQSRQV 439
Score = 58 (25.5 bits), Expect = 1.4e-30, Sum P(4) = 1.4e-30
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 131 SLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKF 164
S P+E+++ F ++F+VD ++ G L L K+
Sbjct: 238 SFAPYEANVDFEIRFMVDADIVGCNWLELPAGKY 271
Score = 40 (19.1 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 27/95 (28%), Positives = 43/95 (45%)
Query: 1156 VAETVLRR---KIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRT 1212
+AE + +R PS+ RV + G A Y E + + +L I Q + +
Sbjct: 901 LAERMRKRDPGSAPSLGDRVPYVIIGAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQL 960
Query: 1213 SE-LARVFGIDFFSVLSRGSQYRVESMLLRLAHTQ 1246
++ L R+F +L G R ES+LLR HT+
Sbjct: 961 AKPLLRIFE----PILGEG---RAESVLLRGDHTR 988
>UNIPROTKB|Q755K6 [details] [associations]
symbol:AGOS_AFL189W "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 GO:GO:0043625 OrthoDB:EOG4B01XB EMBL:AE016819
GenomeReviews:AE016819_GR RefSeq:NP_985361.2 STRING:Q755K6
EnsemblFungi:AAS53185 GeneID:4621586 KEGG:ago:AGOS_AFL189W
Uniprot:Q755K6
Length = 1092
Score = 349 (127.9 bits), Expect = 4.9e-30, Sum P(5) = 4.9e-30
Identities = 103/357 (28%), Positives = 173/357 (48%)
Query: 1104 VVAESLLAKDAIIEDE-WGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLR 1162
+V + K+ + + G + +++ GR+ L++++ +R E +L YT+ +V+ L
Sbjct: 424 LVNSKQVIKETVFSSKAHGTRESKSINIEGRLQLDIFQFVRREYQLRSYTLNSVSAHFLG 483
Query: 1163 RKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGID 1222
+ + ++ G R R Y + A L L ++ +L + +E+ARV G+
Sbjct: 484 EQKEDVHHSIIAS-LHRGDSETRRRLAVYCLKDAYLPLRLLEKLMALVNYTEMARVTGVP 542
Query: 1223 FFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPV 1282
F +++RG Q +V S L R + I P H S + V+EP G+Y P+
Sbjct: 543 FPYLITRGQQIKVISQLYRKCLQID--TIIPNMHGNHSDDQYQGAT-VIEPIRGYYDIPI 599
Query: 1283 VVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNG 1342
LDF SLYPS+M+A+NLC+ T K + L++ +D +I PNG
Sbjct: 600 ATLDFNSLYPSIMMAHNLCYTTLCNKATVQRLQ-------------LKENED-YIITPNG 645
Query: 1343 VMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTY 1402
+V K R+G+LP +LEE+++ R K +KK + + N RQLALK+ AN Y
Sbjct: 646 DYFVTSKKRRGILPIILEELIAARQRAKGELKK--ETDPFKKDVLNGRQLALKISANSVY 703
Query: 1403 GYTAA--G----FSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
G+T A G S ++++ + +E+ + N K A V+YGDTD
Sbjct: 704 GFTGATVGKLPCLSISSSVTAYGRTMIETTKRAVEEKYTIKN-GYKHDAIVVYGDTD 759
Score = 87 (35.7 bits), Expect = 4.9e-30, Sum P(5) = 4.9e-30
Identities = 28/116 (24%), Positives = 52/116 (44%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDSI----NVVALAFENDSDHAVEIYVLLYCKSESHQRS 1012
L +LS +++ R + P+P D + NVV++A E+ ++ + C
Sbjct: 310 LRILSFDIECAGRVGVFPEPEVDPVIQIANVVSIAGES-KPFIRNVFTVDTCAP------ 362
Query: 1013 LVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGI 1068
I ++F E + H+ L DPD+++G++ L +L RAA L +
Sbjct: 363 ---ITGSQIFEHETEEAMLKHWRDFLVEVDPDVIIGYNTTNFDLPYLINRAAALNV 415
Score = 48 (22.0 bits), Expect = 4.9e-30, Sum P(5) = 4.9e-30
Identities = 17/75 (22%), Positives = 33/75 (44%)
Query: 46 VIRVYGSTPAGQKTCLHIHRALPYLYVPC-------ADIPV---QLRQEDDGYMHAISLA 95
V+R +G T G + Y+YVP D+PV L DG + ++ +
Sbjct: 132 VVRFFGVTEQGHSVLCSVTGFKHYMYVPAPANFDARTDVPVLVDYLNDMFDGVVDSVEVC 191
Query: 96 LEKALKVKGSAGSKR 110
+++ + G +G ++
Sbjct: 192 QKQS--IWGYSGDQK 204
Score = 42 (19.8 bits), Expect = 4.9e-30, Sum P(5) = 4.9e-30
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 138 HIPFLLQFLVDYNLYGMGHLHLSKLKF 164
+I + L+ ++D + GM + L K K+
Sbjct: 246 NIAYTLRLMIDCGIVGMSWITLPKGKY 272
Score = 40 (19.1 bits), Expect = 4.9e-30, Sum P(5) = 4.9e-30
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 2 ADSQPDSNIFSVRIVSIDHYMAPPIPGY 29
A S+P S S+ IV D Y + GY
Sbjct: 29 AGSEPVS---SIEIVPTDRYTKQNVQGY 53
>UNIPROTKB|Q8TSB3 [details] [associations]
symbol:MA_0885 "DNA polymerase" species:188937
"Methanosarcina acetivorans C2A" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005694
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0003887 GO:GO:0006297 EMBL:AE010299
GenomeReviews:AE010299_GR eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 OMA:RSFRPYF HSSP:Q56366
KO:K02319 RefSeq:NP_615844.1 ProteinModelPortal:Q8TSB3
GeneID:1472777 KEGG:mac:MA0885 ProtClustDB:CLSK568782
BioCyc:MACE188937:GI2O-954-MONOMER Uniprot:Q8TSB3
Length = 937
Score = 198 (74.8 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 56/185 (30%), Positives = 103/185 (55%)
Query: 1132 GRIVLNVWRLMRGEVKLNMYTVEAVAETVL-RRKIPSIPFRVLTKWFASGPGRARYRCVE 1190
GR+V++ L+R L YT+ AV++ +L R K+ P + W SG ++ V+
Sbjct: 325 GRVVVDALPLVRRAFSLKQYTLRAVSKELLSREKLDVPPLEMEEHWNDSGDKFRKF--VD 382
Query: 1191 YVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLA 1250
Y ++L LE++ +L ++++ LA+V G ++ G VE++LLR ++ +
Sbjct: 383 YARRDSELALELVLELRLLDKYIALAQVSGSLLQEIVDGGQTSMVETLLLREFGLKDRVI 442
Query: 1251 I-SPGNHQVASQPAMEC-LP--LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCL 1306
+ PG+ A + M L V+EP+ G + V++LD++SLYP++M+A+NLC+ T +
Sbjct: 443 LPKPGDELSAERYDMSSDLKGGEVLEPKKGLLEN-VLILDYKSLYPTIMMAHNLCYTTVV 501
Query: 1307 GKILP 1311
+ P
Sbjct: 502 TRDRP 506
Score = 172 (65.6 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 39/113 (34%), Positives = 68/113 (60%)
Query: 1328 VLRDLKDELLI-PPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRI 1386
V RD D I PP+G +VPP+V +G++P +LE++L+ R K+ +K+ + + HR+
Sbjct: 501 VTRDRPDGKTIKPPSGGEFVPPEVFRGIVPSILEDLLNKRGDTKKRMKRTSDENE--HRV 558
Query: 1387 FNARQLALKLIANVTYGYTAAGFS-GRMPCAELADSIVQCGRSTLEKAISFVN 1438
+A QLA+K++ N YGY+ G++ R+ LA+++ GRS + +N
Sbjct: 559 LDATQLAIKILLNSFYGYS--GYARARLYSLTLANAVTSFGRSNILNTRDLIN 609
Score = 90 (36.7 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 27/111 (24%), Positives = 51/111 (45%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDSINVVALAFEND-SDHAVEIYVLLYCKSESHQRSLVG 1015
L L+ +++ P P I +++ +FE + H ++L K + G
Sbjct: 192 LKYLAFDIECLPLDGGMPSPDVSPIIMISFSFEPEYKGHKT---LILLAKPAA------G 242
Query: 1016 IPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHL 1066
+ D V C E + + F +I+C +DPDI+ G++ Q + ++ ER L
Sbjct: 243 M-DGDVLSCMDETEMLNKFFEIICEYDPDIVAGYNHQDFDIPYITERVKAL 292
Score = 63 (27.2 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 31/128 (24%), Positives = 55/128 (42%)
Query: 41 VNEV-PVIRVYGSTPAGQKTCLHIHRALPYLYVPCA-DIPVQLRQEDDGYMHAISLALEK 98
VN+ PVIR++G G+ C + PY Y+ + D+ R D + + + +
Sbjct: 15 VNDSGPVIRLFGRGADGKSVCCFVPDFEPYFYLKASGDLHAVARLIKDTFEQVKKVEIVE 74
Query: 99 ALKVKGSAGSKRQHVHECSLVRAKKGGAVFDKSL------------QPHESHIPFLLQFL 146
+ G +K++ + + + K + D+ L Q +ES I F +FL
Sbjct: 75 KFEPVGYQKTKKEMLRVTTRL-PKDVPEIRDEILKIRDVLRAEGDWQVYESDILFRNRFL 133
Query: 147 VDYNLYGM 154
+D L GM
Sbjct: 134 IDRALGGM 141
>ASPGD|ASPL0000065466 [details] [associations]
symbol:AN7325 species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0010972 "negative regulation of G2/M transition of mitotic cell
cycle" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 EMBL:BN001304 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 EMBL:AACD01000127 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 OrthoDB:EOG4B01XB RefSeq:XP_680594.1 STRING:Q5AWK5
EnsemblFungi:CADANIAT00000110 GeneID:2870046 KEGG:ani:AN7325.2
Uniprot:Q5AWK5
Length = 1044
Score = 300 (110.7 bits), Expect = 7.9e-29, Sum P(4) = 7.9e-29
Identities = 105/354 (29%), Positives = 175/354 (49%)
Query: 1111 AKDAIIED-EWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIP 1169
AKD + G + GR+ L++ +L++ + L YT+ +V+ L + +
Sbjct: 426 AKDTNFSSKQMGNRDTKATNTNGRLQLDLLQLVQRDHNLRSYTLNSVSYEFLGEQKEDVH 485
Query: 1170 FRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSR 1229
++T+ + P +R R Y + A L +M++L + +E+ARV G+ F +LSR
Sbjct: 486 HTMITELYNGTPD-SRRRLAVYCLKDAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLLSR 544
Query: 1230 GSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQS 1289
G Q + S L R A Q L I P N + + E V+EP +Y P+ LDF S
Sbjct: 545 GQQVKFLSQLYRKA-LQQQLVI-P-NMKSTDEQDYEGAT-VIEPIRDYYDVPIATLDFAS 600
Query: 1290 LYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPK 1349
LYPS++ A+NLC+ T L K N+ V+ + D ++ ++ PNG M+ PK
Sbjct: 601 LYPSIIQAHNLCYTTLLNK------NS--VAGMKKD--------EDYIVTPNGDMFCTPK 644
Query: 1350 VRKGVLPRLLEEILSTRIMVKQAI-KKLAPSQQ-ILHRIFNARQLALKLIANVTYGYTAA 1407
VRKG+L ++LEE+LS R K+ + ++ P ++ +L+ A +++ + +T G T
Sbjct: 645 VRKGLLSQILEELLSARKKAKKELAQETDPFKKAVLNGRQLALKVSANSVYGLT-GATV- 702
Query: 1408 GFSGRMPCAELADS----IVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTV 1457
G + A S +++ + +E + N AKVIYGDTD V
Sbjct: 703 GKLPCLAIASSTTSYGRQMIEKTKQEVEARYTIAN-GYSHDAKVIYGDTDSVMV 755
Score = 86 (35.3 bits), Expect = 7.9e-29, Sum P(4) = 7.9e-29
Identities = 25/73 (34%), Positives = 34/73 (46%)
Query: 24 PPIPGYD-----ICYSSLQG--GKVNEVPVIRVYGSTPAGQKTCLHIHRALPYLYVPCAD 76
PP+ +D IC+ + G P IR++G T AGQ LH+ YLY+
Sbjct: 92 PPLGEFDPTKDNICFQQIDAEEGTTMGKPAIRLFGVTEAGQSVLLHVTGFQHYLYIAA-- 149
Query: 77 IPVQLRQED-DGY 88
PV +ED D Y
Sbjct: 150 -PVGFTKEDCDPY 161
Score = 80 (33.2 bits), Expect = 7.9e-29, Sum P(4) = 7.9e-29
Identities = 26/114 (22%), Positives = 52/114 (45%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDSI----NVVALAFENDSDHAVEIYVLLYCKSESHQRS 1012
L +LS +++ R + P+P +D + NVV + ++V+ C S
Sbjct: 305 LRILSFDIECAGRKGIFPEPNHDPVIQIANVVT-RYGESKPFIRNVFVMNTC-------S 356
Query: 1013 LVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHL 1066
L I + ++ +E + + + DPD+++G++I +L +RA HL
Sbjct: 357 L--IVNTQILEFQQEEKMLMAWRDFIQKVDPDVIIGYNIANFDFPYLLDRAKHL 408
Score = 47 (21.6 bits), Expect = 7.9e-29, Sum P(4) = 7.9e-29
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 101 KVKGSAGSKRQHVHECSLVRAKKGGAV-FDKSLQPHESHIPFLLQFLVDYNLYGMGHLHL 159
K++ + +K Q V+ L GG + FD +I +LL+F++D ++ GM +
Sbjct: 211 KLRSALETKAQTVNYKGLWTNADGGILTFD--------NIQYLLRFMIDTDIQGMSWVEA 262
Query: 160 SKLKFRHPVP 169
K+ P
Sbjct: 263 PAGKYELIAP 272
>UNIPROTKB|Q5AWK5 [details] [associations]
symbol:AN7325.2 "DNA polymerase" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000084 "S phase of mitotic cell
cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0003677
EMBL:BN001304 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
EMBL:AACD01000127 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625
OrthoDB:EOG4B01XB RefSeq:XP_680594.1 STRING:Q5AWK5
EnsemblFungi:CADANIAT00000110 GeneID:2870046 KEGG:ani:AN7325.2
Uniprot:Q5AWK5
Length = 1044
Score = 300 (110.7 bits), Expect = 7.9e-29, Sum P(4) = 7.9e-29
Identities = 105/354 (29%), Positives = 175/354 (49%)
Query: 1111 AKDAIIED-EWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIP 1169
AKD + G + GR+ L++ +L++ + L YT+ +V+ L + +
Sbjct: 426 AKDTNFSSKQMGNRDTKATNTNGRLQLDLLQLVQRDHNLRSYTLNSVSYEFLGEQKEDVH 485
Query: 1170 FRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSR 1229
++T+ + P +R R Y + A L +M++L + +E+ARV G+ F +LSR
Sbjct: 486 HTMITELYNGTPD-SRRRLAVYCLKDAYLPQRLMDKLMCLVNYTEMARVTGVPFNFLLSR 544
Query: 1230 GSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQS 1289
G Q + S L R A Q L I P N + + E V+EP +Y P+ LDF S
Sbjct: 545 GQQVKFLSQLYRKA-LQQQLVI-P-NMKSTDEQDYEGAT-VIEPIRDYYDVPIATLDFAS 600
Query: 1290 LYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPK 1349
LYPS++ A+NLC+ T L K N+ V+ + D ++ ++ PNG M+ PK
Sbjct: 601 LYPSIIQAHNLCYTTLLNK------NS--VAGMKKD--------EDYIVTPNGDMFCTPK 644
Query: 1350 VRKGVLPRLLEEILSTRIMVKQAI-KKLAPSQQ-ILHRIFNARQLALKLIANVTYGYTAA 1407
VRKG+L ++LEE+LS R K+ + ++ P ++ +L+ A +++ + +T G T
Sbjct: 645 VRKGLLSQILEELLSARKKAKKELAQETDPFKKAVLNGRQLALKVSANSVYGLT-GATV- 702
Query: 1408 GFSGRMPCAELADS----IVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTV 1457
G + A S +++ + +E + N AKVIYGDTD V
Sbjct: 703 GKLPCLAIASSTTSYGRQMIEKTKQEVEARYTIAN-GYSHDAKVIYGDTDSVMV 755
Score = 86 (35.3 bits), Expect = 7.9e-29, Sum P(4) = 7.9e-29
Identities = 25/73 (34%), Positives = 34/73 (46%)
Query: 24 PPIPGYD-----ICYSSLQG--GKVNEVPVIRVYGSTPAGQKTCLHIHRALPYLYVPCAD 76
PP+ +D IC+ + G P IR++G T AGQ LH+ YLY+
Sbjct: 92 PPLGEFDPTKDNICFQQIDAEEGTTMGKPAIRLFGVTEAGQSVLLHVTGFQHYLYIAA-- 149
Query: 77 IPVQLRQED-DGY 88
PV +ED D Y
Sbjct: 150 -PVGFTKEDCDPY 161
Score = 80 (33.2 bits), Expect = 7.9e-29, Sum P(4) = 7.9e-29
Identities = 26/114 (22%), Positives = 52/114 (45%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDSI----NVVALAFENDSDHAVEIYVLLYCKSESHQRS 1012
L +LS +++ R + P+P +D + NVV + ++V+ C S
Sbjct: 305 LRILSFDIECAGRKGIFPEPNHDPVIQIANVVT-RYGESKPFIRNVFVMNTC-------S 356
Query: 1013 LVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHL 1066
L I + ++ +E + + + DPD+++G++I +L +RA HL
Sbjct: 357 L--IVNTQILEFQQEEKMLMAWRDFIQKVDPDVIIGYNIANFDFPYLLDRAKHL 408
Score = 47 (21.6 bits), Expect = 7.9e-29, Sum P(4) = 7.9e-29
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 101 KVKGSAGSKRQHVHECSLVRAKKGGAV-FDKSLQPHESHIPFLLQFLVDYNLYGMGHLHL 159
K++ + +K Q V+ L GG + FD +I +LL+F++D ++ GM +
Sbjct: 211 KLRSALETKAQTVNYKGLWTNADGGILTFD--------NIQYLLRFMIDTDIQGMSWVEA 262
Query: 160 SKLKFRHPVP 169
K+ P
Sbjct: 263 PAGKYELIAP 272
>UNIPROTKB|Q9LRE6 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:39947 "Oryza sativa Japonica Group" [GO:0000084 "S phase of
mitotic cell cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0006287 "base-excision repair, gap-filling"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 EMBL:DP000010 EMBL:AP008217 GO:GO:0051539
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0043137
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 EMBL:AB037899
EMBL:AC128644 EMBL:AC134047 RefSeq:NP_001067405.1 UniGene:Os.3738
ProteinModelPortal:Q9LRE6 STRING:Q9LRE6 PRIDE:Q9LRE6
EnsemblPlants:LOC_Os11g08330.1 GeneID:4349968
KEGG:dosa:Os11t0186400-00 KEGG:osa:4349968 Gramene:Q9LRE6
ProtClustDB:CLSN2698457 Uniprot:Q9LRE6
Length = 1105
Score = 305 (112.4 bits), Expect = 9.5e-29, Sum P(3) = 9.5e-29
Identities = 98/344 (28%), Positives = 165/344 (47%)
Query: 1119 EWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFA 1178
++G + + V GR+ ++ + M+ + KL+ Y++ +V+ L + + +++
Sbjct: 444 QYGMRESKDVAVEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLGEQKEDVHHSIISD-LQ 502
Query: 1179 SGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESM 1238
+G R R Y + A L ++++L I E+ARV G+ +LSRG +V S
Sbjct: 503 NGNSETRRRLAVYCLKDAYLPQRLLDKLMYIYNYVEMARVTGVPISFLLSRGQSIKVLSQ 562
Query: 1239 LLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAY 1298
LLR A +N L I Q + Q E V+E +GFY P+ LDF SLYPS+M+AY
Sbjct: 563 LLRKAKQKN-LVIPNIKGQASGQDTFEGAT-VLEARAGFYEKPIATLDFASLYPSIMMAY 620
Query: 1299 NLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRL 1358
NLC+CT + P L + P V + P+G +V P V+KG+LP +
Sbjct: 621 NLCYCTL---VPPEDARKLNL----PPESVNKT--------PSGETFVKPDVQKGILPEI 665
Query: 1359 LEEILSTRIMVKQAIKKLA-PSQQ-ILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCA 1416
LEE+L+ R K +K+ P ++ +L A +++ + T G T +
Sbjct: 666 LEELLAARKRAKADLKEAKDPFERAVLDGRQLALKISANSVYGFT-GATVGQLPCLEISS 724
Query: 1417 ELAD---SIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTV 1457
+ +++ + +E + + E A+VIYGDTD V
Sbjct: 725 SVTSYGRQMIEHTKKLVEDKFTTLGGYEH-NAEVIYGDTDSVMV 767
Score = 83 (34.3 bits), Expect = 9.5e-29, Sum P(3) = 9.5e-29
Identities = 35/136 (25%), Positives = 63/136 (46%)
Query: 959 LLSIEVQAESRGDLRPDPRYDSINVVALAFENDSDHAVEIYVLLYCKSESHQRSLVGIPD 1018
+LS +++ R P+P +D + +A + + ++ KS S +VG+ D
Sbjct: 316 ILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEGQPFVRNVMTLKSCS---PIVGV-D 371
Query: 1019 CKVFVCSKEIHL-FSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRT 1077
F +++ L + FI+ DPDI++G++I L +L ERA L I + R
Sbjct: 372 VMSFDTERDVLLAWRDFIR---EVDPDIIIGYNICKFDLPYLIERAEVLKIVEFPILGRI 428
Query: 1078 PLESKIAAGDSEISER 1093
S++ D+ S R
Sbjct: 429 R-NSRVRVRDTTFSSR 443
Score = 79 (32.9 bits), Expect = 9.5e-29, Sum P(3) = 9.5e-29
Identities = 25/97 (25%), Positives = 41/97 (42%)
Query: 46 VIRVYGSTPAGQKTCLHIHRALPYLYVPCADIPVQLRQEDDGYMHAISLALEKALKVKGS 105
++R++G T G C +H PY Y+ C P+ + +D H LE +K
Sbjct: 131 ILRIFGVTREGHSVCCQVHGFEPYFYISC---PMGMGPDDISRFHQ---TLEGRMKDSNR 184
Query: 106 AGSKRQHVHECSLVRAKKGGAVFDKSLQPHESHIPFL 142
+ + V LV+ + + QP +S PFL
Sbjct: 185 NSNVPRFVKRIELVQKQ---TIMH--YQPQQSQ-PFL 215
Score = 57 (25.1 bits), Expect = 1.8e-26, Sum P(3) = 1.8e-26
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 130 KSLQPHESHIPFLLQFLVDYNLYG 153
KS +ES+I F L+F++D N+ G
Sbjct: 244 KSFLTYESNILFALRFMIDCNIVG 267
Score = 39 (18.8 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 480 EDLNSDDELLHETILS 495
ED+ +D L ETIL+
Sbjct: 49 EDMMDEDVFLDETILA 64
>UNIPROTKB|Q7RSZ8 [details] [associations]
symbol:PY00203 "DNA polymerase" species:73239 "Plasmodium
yoelii yoelii" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
GO:GO:0043625 EMBL:AABL01000054 RefSeq:XP_729844.1
ProteinModelPortal:Q7RSZ8 STRING:Q7RSZ8 PRIDE:Q7RSZ8 GeneID:3807142
KEGG:pyo:PY00203 EuPathDB:PlasmoDB:PY00203 Uniprot:Q7RSZ8
Length = 1097
Score = 303 (111.7 bits), Expect = 3.5e-27, Sum P(4) = 3.5e-27
Identities = 77/196 (39%), Positives = 107/196 (54%)
Query: 1270 VMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVL 1329
V+EP G+Y +P+ LDF SLYPS+MIA+NLC+ T + +N +S DL+
Sbjct: 585 VLEPIKGYYIEPISTLDFASLYPSIMIAHNLCYSTLI-------KNNDEIS----DLN-- 631
Query: 1330 RDLKDELLIPP--NGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIF 1387
K+++ P N +V V++GVLP ++EE++ R VK +K I +
Sbjct: 632 ---KNDITTVPGKNNFKFVKGNVKRGVLPLIVEELIRARKNVKAMMKN--EQNPITKMVL 686
Query: 1388 NARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFV------NENE 1441
N RQLALK+ AN YGYT A G++PC E+A SI GRS +EK V N
Sbjct: 687 NGRQLALKISANSVYGYTGAAAGGQLPCLEIATSITTFGRSMIEKTKETVEAYYCKNNGF 746
Query: 1442 KWKAKVIYGDTDRYTV 1457
+ A V+YGDTD V
Sbjct: 747 EHNATVVYGDTDSVMV 762
Score = 252 (93.8 bits), Expect = 2.2e-21, Sum P(5) = 2.2e-21
Identities = 64/199 (32%), Positives = 105/199 (52%)
Query: 1110 LAKDAIIEDEWGRTHASG-LHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSI 1168
L KDA + TH + +++ GRI +V+ L++ + +L YT+ V+ L+ + +
Sbjct: 427 LVKDANFSSKQFGTHETKEININGRIQFDVYDLIKRDYRLKSYTLNYVSFEFLKEQKEDV 486
Query: 1169 PFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLS 1228
+ ++ + +R R Y + L L ++++L I E+ARV G F +L+
Sbjct: 487 HYSIMND-LQNENSESRKRIATYCIKDGLLPLRLIDKLLFIYNYVEMARVTGTPFVYLLT 545
Query: 1229 RGSQYRVESMLLRLAHTQNYLAISPGNH-QVASQPAMECLPLVMEPESGFYADPVVVLDF 1287
RG Q +V S L R NY I P + +V + E V+EP G+Y +P+ LDF
Sbjct: 546 RGQQIKVTSQLYRKCKELNY--IIPSTYIKVNNNDKFEGAT-VLEPIKGYYIEPISTLDF 602
Query: 1288 QSLYPSMMIAYNLCFCTCL 1306
SLYPS+MIA+NLC+ T +
Sbjct: 603 ASLYPSIMIAHNLCYSTLI 621
Score = 79 (32.9 bits), Expect = 3.5e-27, Sum P(4) = 3.5e-27
Identities = 26/98 (26%), Positives = 45/98 (45%)
Query: 33 YSSLQGGKVN--EVPVIRVYGSTPAGQKTCLHIHRALPYLYVPCADIPVQLRQEDDGYMH 90
Y + G + N VP+IR+Y T G +++H PY YV + P +D +
Sbjct: 106 YKIILGKEKNFISVPIIRIYSITNCGYSVVVNVHNFFPYFYV---EKPNGFNNDDMIKLE 162
Query: 91 AI---SLALEKALKVKGSAGSKRQHVHECSLVRAKKGG 125
++ +L+L K+ + K + V S++ KK G
Sbjct: 163 SMLNETLSLNNQFKMYENKILKIETVKTESIMYFKKSG 200
Score = 65 (27.9 bits), Expect = 3.5e-27, Sum P(4) = 3.5e-27
Identities = 28/126 (22%), Positives = 54/126 (42%)
Query: 956 QLTLLSIEVQA---ESRG--DLRPDPRYDSINVVALAFENDSDHAVEIYVLLYCKSESHQ 1010
+L +LS +++ + +G + + DP +++ L + + A I+ LL C S
Sbjct: 304 KLRILSFDIECIKLDGKGFPEAKTDPIIQISSILYLQGDPIENCAKFIFTLLECAS---- 359
Query: 1011 RSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGL 1070
IP V + E + + + + DPD L G++I + ++ R L +
Sbjct: 360 -----IPGSNVIWFNDEKTMLEAWNEFVIRIDPDFLTGYNIINFDIPYILNRGTALNLKK 414
Query: 1071 LNDISR 1076
L I R
Sbjct: 415 LKYIGR 420
Score = 51 (23.0 bits), Expect = 3.5e-27, Sum P(4) = 3.5e-27
Identities = 7/27 (25%), Positives = 18/27 (66%)
Query: 135 HESHIPFLLQFLVDYNLYGMGHLHLSK 161
+E+++PF+L++++D + G + K
Sbjct: 238 YEANLPFILRYIIDKKITGSSWIKCEK 264
Score = 40 (19.1 bits), Expect = 2.2e-21, Sum P(5) = 2.2e-21
Identities = 14/76 (18%), Positives = 35/76 (46%)
Query: 1354 VLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRM 1413
++ +++E +L+ ++ K + ++ + + + + L+ VT A + R+
Sbjct: 839 LIQQMMETVLNKLLIEKDLNSAIEYTKSKIKDLLT-NNIDMSLLV-VTKSLGKAEYETRL 896
Query: 1414 PCAELADSIVQCGRST 1429
P ELA + Q +T
Sbjct: 897 PHVELAKKLKQRDSAT 912
>GENEDB_PFALCIPARUM|PF10_0165 [details] [associations]
symbol:PF10_0165 "DNA polymerase delta
catalytic subunit" species:5833 "Plasmodium falciparum" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0043625
"delta DNA polymerase complex" evidence=ISS] [GO:0008310
"single-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=ISS] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE014185 GO:GO:0003887
Gene3D:3.90.1600.10 InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 ProtClustDB:PTZ00166 GO:GO:0008310
RefSeq:XP_001347450.1 ProteinModelPortal:Q7KQL4
EnsemblProtists:PF10_0165:mRNA GeneID:810323 KEGG:pfa:PF10_0165
EuPathDB:PlasmoDB:PF3D7_1017000 Uniprot:Q7KQL4
Length = 1094
Score = 305 (112.4 bits), Expect = 8.9e-27, Sum P(5) = 8.9e-27
Identities = 78/194 (40%), Positives = 108/194 (55%)
Query: 1270 VMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVL 1329
V+EP G+Y +P+ LDF SLYPS+MIA+NLC+ T + K N VS + D
Sbjct: 582 VLEPIKGYYIEPISTLDFASLYPSIMIAHNLCYSTLI------KSNH-EVSDLQND---- 630
Query: 1330 RDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNA 1389
D+ + N + +V V+KG+LP ++EE++ R VK IK I + N
Sbjct: 631 -DITT--IQGKNNLKFVKKNVKKGILPLIVEELIEARKKVKLLIKN--EKNNITKMVLNG 685
Query: 1390 RQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAI----SFVNENEKWK- 1444
RQLALK+ AN YGYT A G++PC E+A SI GRS +EK SF ++ ++
Sbjct: 686 RQLALKISANSVYGYTGASSGGQLPCLEVAVSITTLGRSMIEKTKERVESFYCKSNGYEH 745
Query: 1445 -AKVIYGDTDRYTV 1457
+ VIYGDTD V
Sbjct: 746 NSTVIYGDTDSVMV 759
Score = 70 (29.7 bits), Expect = 8.9e-27, Sum P(5) = 8.9e-27
Identities = 31/126 (24%), Positives = 56/126 (44%)
Query: 956 QLTLLSIEVQA-ESRGDLRPDPRYDSINVVA--LAFENDS-DHAVE-IYVLLYCKSESHQ 1010
+L +LS +++ + G P+ + D I ++ L F+ + D+ + I+ LL C S
Sbjct: 301 KLRILSFDIECIKLDGKGFPEAKNDPIIQISSILYFQGEPIDNCTKFIFTLLECAS---- 356
Query: 1011 RSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGL 1070
IP V + E L + + + DPD L G++I L ++ R L +
Sbjct: 357 -----IPGSNVIWFNDEKTLLEAWNEFIIRIDPDFLTGYNIINFDLPYILNRGTALNLKK 411
Query: 1071 LNDISR 1076
L + R
Sbjct: 412 LKFLGR 417
Score = 67 (28.6 bits), Expect = 8.9e-27, Sum P(5) = 8.9e-27
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 44 VPVIRVYGSTPAGQKTCLHIHRALPYLYVPCAD 76
VP+IR+Y G +++H PY YV D
Sbjct: 116 VPIIRIYSLRKDGCSVLINVHNFFPYFYVEKPD 148
Score = 57 (25.1 bits), Expect = 8.9e-27, Sum P(5) = 8.9e-27
Identities = 7/27 (25%), Positives = 20/27 (74%)
Query: 135 HESHIPFLLQFLVDYNLYGMGHLHLSK 161
+E+++PF+L++++D+ + G ++ K
Sbjct: 235 YEANLPFILRYIIDHKITGSSWINCKK 261
Score = 40 (19.1 bits), Expect = 9.4e-24, Sum P(5) = 9.4e-24
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 1025 SKEIHLFSHF-IKILCSFDPDI-LMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESK 1082
+KEI++F + D L + + S FL E+ + ++ND+ ES+
Sbjct: 440 TKEINIFGRIQFDVYDLIKRDYKLKSYTLNYVSFEFLKEQKEDVHYSIMNDLQNESPESR 499
Score = 38 (18.4 bits), Expect = 8.9e-27, Sum P(5) = 8.9e-27
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 26 IPGYDICYSSLQGGKVNEVP 45
IP Y + Y L+ K N+VP
Sbjct: 13 IP-YGLLYDKLKKEKNNDVP 31
>UNIPROTKB|Q7KQL4 [details] [associations]
symbol:PF10_0165 "DNA polymerase" species:36329 "Plasmodium
falciparum 3D7" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=ISS] [GO:0043625 "delta DNA
polymerase complex" evidence=ISS] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE014185
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 ProtClustDB:PTZ00166
GO:GO:0008310 RefSeq:XP_001347450.1 ProteinModelPortal:Q7KQL4
EnsemblProtists:PF10_0165:mRNA GeneID:810323 KEGG:pfa:PF10_0165
EuPathDB:PlasmoDB:PF3D7_1017000 Uniprot:Q7KQL4
Length = 1094
Score = 305 (112.4 bits), Expect = 8.9e-27, Sum P(5) = 8.9e-27
Identities = 78/194 (40%), Positives = 108/194 (55%)
Query: 1270 VMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHVL 1329
V+EP G+Y +P+ LDF SLYPS+MIA+NLC+ T + K N VS + D
Sbjct: 582 VLEPIKGYYIEPISTLDFASLYPSIMIAHNLCYSTLI------KSNH-EVSDLQND---- 630
Query: 1330 RDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNA 1389
D+ + N + +V V+KG+LP ++EE++ R VK IK I + N
Sbjct: 631 -DITT--IQGKNNLKFVKKNVKKGILPLIVEELIEARKKVKLLIKN--EKNNITKMVLNG 685
Query: 1390 RQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAI----SFVNENEKWK- 1444
RQLALK+ AN YGYT A G++PC E+A SI GRS +EK SF ++ ++
Sbjct: 686 RQLALKISANSVYGYTGASSGGQLPCLEVAVSITTLGRSMIEKTKERVESFYCKSNGYEH 745
Query: 1445 -AKVIYGDTDRYTV 1457
+ VIYGDTD V
Sbjct: 746 NSTVIYGDTDSVMV 759
Score = 70 (29.7 bits), Expect = 8.9e-27, Sum P(5) = 8.9e-27
Identities = 31/126 (24%), Positives = 56/126 (44%)
Query: 956 QLTLLSIEVQA-ESRGDLRPDPRYDSINVVA--LAFENDS-DHAVE-IYVLLYCKSESHQ 1010
+L +LS +++ + G P+ + D I ++ L F+ + D+ + I+ LL C S
Sbjct: 301 KLRILSFDIECIKLDGKGFPEAKNDPIIQISSILYFQGEPIDNCTKFIFTLLECAS---- 356
Query: 1011 RSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGL 1070
IP V + E L + + + DPD L G++I L ++ R L +
Sbjct: 357 -----IPGSNVIWFNDEKTLLEAWNEFIIRIDPDFLTGYNIINFDLPYILNRGTALNLKK 411
Query: 1071 LNDISR 1076
L + R
Sbjct: 412 LKFLGR 417
Score = 67 (28.6 bits), Expect = 8.9e-27, Sum P(5) = 8.9e-27
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 44 VPVIRVYGSTPAGQKTCLHIHRALPYLYVPCAD 76
VP+IR+Y G +++H PY YV D
Sbjct: 116 VPIIRIYSLRKDGCSVLINVHNFFPYFYVEKPD 148
Score = 57 (25.1 bits), Expect = 8.9e-27, Sum P(5) = 8.9e-27
Identities = 7/27 (25%), Positives = 20/27 (74%)
Query: 135 HESHIPFLLQFLVDYNLYGMGHLHLSK 161
+E+++PF+L++++D+ + G ++ K
Sbjct: 235 YEANLPFILRYIIDHKITGSSWINCKK 261
Score = 40 (19.1 bits), Expect = 9.4e-24, Sum P(5) = 9.4e-24
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 1025 SKEIHLFSHF-IKILCSFDPDI-LMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESK 1082
+KEI++F + D L + + S FL E+ + ++ND+ ES+
Sbjct: 440 TKEINIFGRIQFDVYDLIKRDYKLKSYTLNYVSFEFLKEQKEDVHYSIMNDLQNESPESR 499
Score = 38 (18.4 bits), Expect = 8.9e-27, Sum P(5) = 8.9e-27
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 26 IPGYDICYSSLQGGKVNEVP 45
IP Y + Y L+ K N+VP
Sbjct: 13 IP-YGLLYDKLKKEKNNDVP 31
>UNIPROTKB|Q0D7U2 [details] [associations]
symbol:Os07g0209500 "Os07g0209500 protein" species:39947
"Oryza sativa Japonica Group" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0016035
"zeta DNA polymerase complex" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA]
InterPro:IPR012337 GO:GO:0005634 GO:GO:0005694 GO:GO:0003676
SUPFAM:SSF53098 EMBL:AP008213 GO:GO:0003887 eggNOG:COG0417
GO:GO:0019985 GO:GO:0016035 RefSeq:NP_001059167.2 UniGene:Os.25087
GeneID:4342704 KEGG:osa:4342704 Gramene:Q0D7U2 Uniprot:Q0D7U2
Length = 107
Score = 291 (107.5 bits), Expect = 3.4e-24, P = 3.4e-24
Identities = 50/80 (62%), Positives = 64/80 (80%)
Query: 1113 DAIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRV 1172
D E W THASG+HV GRI+LN+WRLMR E+KLN Y++EAVA+ VLR K+P +P ++
Sbjct: 27 DDASESNWSHTHASGIHVDGRIILNLWRLMRAEIKLNNYSLEAVADEVLR-KVPLVPTKI 85
Query: 1173 LTKWFASGPGRARYRCVEYV 1192
L +WFA+GPGR RYRC+EYV
Sbjct: 86 LNRWFATGPGRGRYRCIEYV 105
>UNIPROTKB|F1RZP3 [details] [associations]
symbol:F1RZP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR006134 InterPro:IPR017964 Pfam:PF00136
PROSITE:PS00116 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 GeneTree:ENSGT00550000074640
EMBL:CU915528 Ensembl:ENSSSCT00000004881 Uniprot:F1RZP3
Length = 440
Score = 304 (112.1 bits), Expect = 3.7e-24, P = 3.7e-24
Identities = 61/102 (59%), Positives = 75/102 (73%)
Query: 1358 LLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAE 1417
+LEEIL TR+MVKQ++K + L R+ ARQL LKLIANVT+GYTAA FSGRMPC E
Sbjct: 1 MLEEILKTRLMVKQSMKAYK-QDRALSRMLEARQLGLKLIANVTFGYTAANFSGRMPCIE 59
Query: 1418 LADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI 1459
+ DSIV R TLE+AI VN+ +KW A+V+YGDTD V +
Sbjct: 60 VGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLL 101
>UNIPROTKB|A8IZI7 [details] [associations]
symbol:CHLREDRAFT_117850 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000084 "S phase of mitotic cell
cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR012337 GO:GO:0007346 GO:GO:0003676 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 GO:GO:0006287
GO:GO:0043625 KO:K02350 EMBL:DS496129 RefSeq:XP_001694422.1
EnsemblPlants:EDP02417 GeneID:5720007 KEGG:cre:CHLREDRAFT_117850
ProtClustDB:CLSN2696999 Uniprot:A8IZI7
Length = 135
Score = 281 (104.0 bits), Expect = 3.9e-23, P = 3.9e-23
Identities = 56/113 (49%), Positives = 76/113 (67%)
Query: 11 FSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPYL 70
F++RIVS+D+YMAPPIP D C+SSL+G V++VPVIR++GSTPAGQK C+H+HRA PY
Sbjct: 9 FTIRIVSLDYYMAPPIPHLDFCFSSLEGTTVDQVPVIRIFGSTPAGQKACVHVHRAFPYF 68
Query: 71 YVPCAD-IPVQLRQEDDGYMHAISLALEKALKVKGSAGSKRQHVHECSLVRAK 122
YVP + P + + A+ L AL ++ +A RQ VH LVR +
Sbjct: 69 YVPYDESFPTTPNEGEWAMCSAVCLR-RMALAIEAAA--PRQVVHALQLVRGR 118
>DICTYBASE|DDB_G0285381 [details] [associations]
symbol:polD1 "DNA polymerase delta subunit 1"
species:44689 "Dictyostelium discoideum" [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA;ISS;IBA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0043625 "delta DNA polymerase complex" evidence=ISS;IBA]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IBA] [GO:0005634 "nucleus" evidence=IEA;IBA]
[GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0285381 GO:GO:0007346
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
EMBL:AAFI02000079 GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 OMA:MIEQTKQ GO:GO:0043625 RefSeq:XP_638283.1
HSSP:P26811 STRING:Q54N97 EnsemblProtists:DDB0232268 GeneID:8625091
KEGG:ddi:DDB_G0285381 ProtClustDB:PTZ00166 Uniprot:Q54N97
Length = 1104
Score = 225 (84.3 bits), Expect = 2.2e-22, Sum P(4) = 2.2e-22
Identities = 92/346 (26%), Positives = 162/346 (46%)
Query: 1121 GRTHASGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASG 1180
G + + + GR ++ + ++ + KL Y++ V+ L+ + + F +++ +G
Sbjct: 447 GTRESKEISMPGRTQFDLMQAIQRDHKLTSYSLNNVSAHFLKEQKEDVHFSIISD-LQNG 505
Query: 1181 PGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLL 1240
R R Y + A L + ++++L ++ +E+ARV G+ +L RG +V S L
Sbjct: 506 TDDDRRRLAVYCIKDAVLPMRLLDKLMILINYTEMARVTGVPLSYLLGRGEGIKVLSQLY 565
Query: 1241 RLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNL 1300
R A +N+L P ++V + +V+EP GFY P+ LDF SLYPS+M+A+NL
Sbjct: 566 RKAMVENFLI--P-TYKVTGKGEKFQGAIVIEPTPGFYDTPIATLDFTSLYPSIMMAHNL 622
Query: 1301 CFCTCLG----KILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLP 1356
C+ T L K LP + T + F D + D K LL P ++ RK
Sbjct: 623 CYSTLLSAEEAKKLPPEIYT--TTPFG-DHFIKSDTKKGLL--PR-ILEELLSARK---- 672
Query: 1357 RLLEEILSTRIMVKQAI---KKLAP--SQQILHRIFNARQLALKLIANVTYGYTAAGFSG 1411
+ +E+ + + K+A+ ++LA S ++ AR L + ++ T+ G
Sbjct: 673 KAKDELKNEKDPFKRAVLDGRQLALKISANSVYGFTGARVGKLPCL-EISRSVTSFG--- 728
Query: 1412 RMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTV 1457
E+ D + +E+ + N K A +IYGDTD V
Sbjct: 729 ----REMLDKT----KKIVEERYTIAN-GYKHDAVIIYGDTDSVMV 765
Score = 91 (37.1 bits), Expect = 2.2e-22, Sum P(4) = 2.2e-22
Identities = 32/122 (26%), Positives = 55/122 (45%)
Query: 959 LLSIEVQAESRGDLRPDPRYDSINVVALAFENDSDHAVEIYVLLYCKSESHQRSLVGIPD 1018
+LS +++ R + P+P D + ++ +N+ D I + K S S+VG
Sbjct: 317 ILSFDIECAGRKGVFPEPEKDPVIQISNIVKNNGDAEPFIKNIFTLKGCS---SIVG--- 370
Query: 1019 CKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGI---GLLNDIS 1075
V +E L + K + DPD+++G++I + +L RA L I LL I
Sbjct: 371 AHVIPHKREEDLLREWRKFVIKVDPDVIIGYNIVNFDIPYLISRARQLKIPEFALLGRIK 430
Query: 1076 RT 1077
T
Sbjct: 431 TT 432
Score = 85 (35.0 bits), Expect = 2.2e-22, Sum P(4) = 2.2e-22
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 25 PIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPYLYVPC 74
P+PG + G KV +P IR++G T G +H LPY ++ C
Sbjct: 115 PVPG-------MPGPKVGPLPAIRLFGVTKEGNSVLCKVHGFLPYFFISC 157
Score = 54 (24.1 bits), Expect = 2.2e-22, Sum P(4) = 2.2e-22
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 130 KSLQPHESHIPFLLQFLVDYNLYGMGHLHL 159
+ Q +ES+I F L+FL+D + G + L
Sbjct: 248 RQYQTYESNILFALRFLIDKGITGCSWIEL 277
Score = 43 (20.2 bits), Expect = 0.00094, Sum P(4) = 0.00094
Identities = 18/87 (20%), Positives = 40/87 (45%)
Query: 1309 ILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLL--EEILSTR 1366
+L +K+ G+ +PD+H D+K ++ + + V V +L ++L +++ S
Sbjct: 806 LLMAKKKYAGLYWTKPDIHDRMDVKGLEMVRRDTCLLVR-NVVSTILKKILIEKDLKSAE 864
Query: 1367 IMVKQAIKKLAPSQQILHRIFNARQLA 1393
K I L ++ L + + L+
Sbjct: 865 EYTKSVISDLLQNRLDLSMLVITKALS 891
Score = 38 (18.4 bits), Expect = 9.5e-21, Sum P(4) = 9.5e-21
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 604 WTNAASKCNVKKKLWGSLPFSVSEQFNKDIETVSCNI 640
+T A K ++K L S+ S ++ KDIE + +I
Sbjct: 161 FTEADCK-SLKHDLNESMKMSSNQSNEKDIENIVVSI 196
>UNIPROTKB|A8HPJ0 [details] [associations]
symbol:POLD1 "DNA polymerase" species:3055 "Chlamydomonas
reinhardtii" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 EMBL:DS496108 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GO:GO:0043625 ProtClustDB:CLSN2698457
RefSeq:XP_001689909.1 UniGene:Cre.7835 STRING:A8HPJ0
EnsemblPlants:EDP09647 GeneID:5715105 KEGG:cre:CHLREDRAFT_189721
BioCyc:CHLAMY:CHLREDRAFT_189721-MONOMER Uniprot:A8HPJ0
Length = 1091
Score = 219 (82.2 bits), Expect = 3.0e-21, Sum P(4) = 3.0e-21
Identities = 87/342 (25%), Positives = 151/342 (44%)
Query: 1123 THA-SGLHVGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGP 1181
TH + + GR+ ++ ++ + KL+ Y++ +V+ L + + + +G
Sbjct: 426 THEYKDITIEGRVQFDLLTAIQRDHKLSSYSLNSVSAHFLGEQKEDVHHSAIAD-LQAGN 484
Query: 1182 GRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLR 1241
R R Y + A L ++++L E+ARV G+ +L+RG +V S LLR
Sbjct: 485 EETRRRLAVYCLKDAYLPQRLLDKLMYTYNYIEMARVTGVPLSYLLTRGQSIKVFSQLLR 544
Query: 1242 LAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMIAYNLC 1301
A + + + P N +V P+ G+ + VLD + + +A L
Sbjct: 545 KAAAKGF--VIP-NIKVQG-------PVAGADGVGY--EGATVLDPKIGFYDRPVA-TLD 591
Query: 1302 FCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEE 1361
F + I+ + + L+++ E P+G +V ++G+LP +LEE
Sbjct: 592 FASLYPSIMMAHNLCYTTLLTKDQLNIVPPEDREQ--SPSGDWFVRNSRQRGLLPEILEE 649
Query: 1362 ILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADS 1421
+L+ R K +K A + + RQLALK+ AN YG+T A G+MPC ++ S
Sbjct: 650 LLAARKRAKNDLK--AEKDPFKRAVLDGRQLALKVSANSVYGFTGATV-GKMPCLAISAS 706
Query: 1422 IVQCGRSTLEKAISFVNENE------KWKAKVIYGDTDRYTV 1457
GR + V E+ + +VIYGDTD V
Sbjct: 707 TTSYGREMIMTTRQLVQEHYTRANGYETDCEVIYGDTDSVMV 748
Score = 97 (39.2 bits), Expect = 3.0e-21, Sum P(4) = 3.0e-21
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 1 MADSQPDSNIFSVRIVSIDHYMAPPIPGYDICYSSLQGGKVNEVPVIRVYGSTPAGQKTC 60
+AD P S + + +D+Y+A P G D +V +VPV+R++G AG C
Sbjct: 64 VADFDPASTAIVFQQLEVDYYLAEPRAGVDTVPV-----EVKQVPVLRLFGVNAAGNSVC 118
Query: 61 LHIHRALPYLYV 72
+H PY +
Sbjct: 119 ALVHGFEPYFLI 130
Score = 84 (34.6 bits), Expect = 3.0e-21, Sum P(4) = 3.0e-21
Identities = 31/117 (26%), Positives = 56/117 (47%)
Query: 957 LTLLSIEVQAESRGDLRPDPRYDSI----NVVALAFENDSDHAVEIYVLLYCKSESHQRS 1012
L ++SI+++ R P+ + D + ++V+++ + D I L C S
Sbjct: 291 LRIMSIDIECCGRKGCFPEAKIDPVIQIASMVSVSGKMDGPVVKNIMTLGSCAS------ 344
Query: 1013 LVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIG 1069
+VG +V + E + + +L DPDI++G++I L +L ERA L IG
Sbjct: 345 IVG---AEVMSFNDEAEMLLRWRDLLVESDPDIIIGYNILNFDLPYLYERADALKIG 398
Score = 44 (20.5 bits), Expect = 3.0e-21, Sum P(4) = 3.0e-21
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 135 HESHIPFLLQFLVDYNLYG 153
+ES++ F L+F+VD + G
Sbjct: 225 YESNVLFTLRFMVDCKVVG 243
>UNIPROTKB|O48653 [details] [associations]
symbol:LOC_Os01g64820 "DNA polymerase alpha catalytic
subunit" species:39947 "Oryza sativa Japonica Group" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS;IDA]
[GO:0003896 "DNA primase activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006269 "DNA replication, synthesis of
RNA primer" evidence=IDA] [GO:0006270 "DNA replication initiation"
evidence=IEP] [GO:0006273 "lagging strand elongation" evidence=IEP]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0051539
GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0003896
GO:GO:0003887 GO:GO:0006273 eggNOG:COG0417 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 OMA:CASIQGT EMBL:AB004461 EMBL:AP003286
STRING:O48653 Gramene:O48653 Uniprot:O48653
Length = 1534
Score = 140 (54.3 bits), Expect = 2.9e-16, Sum P(5) = 2.9e-16
Identities = 41/109 (37%), Positives = 55/109 (50%)
Query: 1346 VPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYT 1405
+P GVLP LL+ ++ R MVK +K + + + F+ +Q ALKL AN YG
Sbjct: 956 LPASKTTGVLPELLKSLVERRRMVKSWLKT---ASGLKRQQFDIQQQALKLTANSMYG-- 1010
Query: 1406 AAGFSG-RMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
GFS R LA+ I GR L+ + V N +VIYGDTD
Sbjct: 1011 CLGFSNSRFYAKPLAELITLQGREILQNTVDLVQNN--LNLEVIYGDTD 1057
Score = 110 (43.8 bits), Expect = 2.9e-16, Sum P(5) = 2.9e-16
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 1269 LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCT 1304
LV+EP+ G Y V++LDF SLYPS++ YN+CF T
Sbjct: 909 LVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTT 944
Score = 100 (40.3 bits), Expect = 2.9e-16, Sum P(5) = 2.9e-16
Identities = 32/121 (26%), Positives = 59/121 (48%)
Query: 1130 VGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSI-PFRVLTKWFASGPGRARYRC 1188
+ GR++ + + R +K Y++ +AET L+++ + P + + +SG A +
Sbjct: 736 IAGRLLCDTYLCSRDLLKEVSYSLTQLAETQLKKERKEVSPHDIPPMFQSSG---ALLKL 792
Query: 1189 VEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNY 1248
VEY A L LE+M L ++ T +L + G + L RVE +LL H + +
Sbjct: 793 VEYGETDACLALELMFHLSVLPLTRQLTNISGNLWGKTLQGSRAQRVEYLLLHAFHARKF 852
Query: 1249 L 1249
+
Sbjct: 853 I 853
Score = 50 (22.7 bits), Expect = 2.9e-16, Sum P(5) = 2.9e-16
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 1025 SKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERA 1063
S E L + + L D D+L+G +I G L L RA
Sbjct: 655 SSERALLNRLMIELSKLDCDVLVGHNISGFDLDVLLHRA 693
Score = 50 (22.7 bits), Expect = 2.9e-16, Sum P(5) = 2.9e-16
Identities = 23/93 (24%), Positives = 38/93 (40%)
Query: 476 SQAAEDLNSDDELLHETILSPLLPETTIDKVLEKANTDYERESQKECQDILDSIEDEVNV 535
S AA L++ ++ + LS + + V K +D R+S I+D + E
Sbjct: 132 SAAAASLSAAAAMMGKQRLSSMFTSS----VFRKPGSDRGRDSSLAADSIVDDVIAEFAP 187
Query: 536 DG--LEERN---SSTVDPSNHPETSSHKKIPQI 563
D EER P+ P T++H K +
Sbjct: 188 DDNDREERRRRVGRVCAPAPAPTTTAHIKAENV 220
Score = 44 (20.5 bits), Expect = 1.1e-15, Sum P(5) = 1.1e-15
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 375 EENLIKLGPANYDYKDPEYLTCLKEGKILSAL 406
E+ ++K+ NY YKDP T L+ G+ AL
Sbjct: 476 EQYVLKI---NYPYKDPALPTDLR-GQHFHAL 503
Score = 39 (18.8 bits), Expect = 3.5e-15, Sum P(5) = 3.5e-15
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 641 SSLCVTEVKDHGATGSLVGNE-LGKSFDALEREDADAHDIKEATAVTGGSVRDLMRRKRS 699
++L KD GA +V ++ LG + D RE+ H +++ G D RKR
Sbjct: 64 AALVARRRKDAGAF--IVDDDGLGYADDG--REEDWTHRTIHSSSDEGSDGEDGAPRKRK 119
Query: 700 YRESSECEPPR 710
PP+
Sbjct: 120 QPRPQSKRPPQ 130
>UNIPROTKB|Q0JHE4 [details] [associations]
symbol:Os01g0868300 "DNA polymerase" species:39947 "Oryza
sativa Japonica Group" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005658 "alpha DNA polymerase:primase complex" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 EMBL:AP008207 GO:GO:0008408 GO:GO:0006303
GO:GO:0003887 KO:K02320 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0005658 TIGRFAMs:TIGR00592
RefSeq:NP_001044920.1 UniGene:Os.47313 STRING:Q0JHE4 GeneID:4325052
KEGG:osa:4325052 Gramene:Q0JHE4 ProtClustDB:CLSN2686901
Uniprot:Q0JHE4
Length = 1244
Score = 140 (54.3 bits), Expect = 3.7e-16, Sum P(5) = 3.7e-16
Identities = 41/109 (37%), Positives = 55/109 (50%)
Query: 1346 VPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYT 1405
+P GVLP LL+ ++ R MVK +K + + + F+ +Q ALKL AN YG
Sbjct: 666 LPASKTTGVLPELLKSLVERRRMVKSWLKT---ASGLKRQQFDIQQQALKLTANSMYG-- 720
Query: 1406 AAGFSG-RMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
GFS R LA+ I GR L+ + V N +VIYGDTD
Sbjct: 721 CLGFSNSRFYAKPLAELITLQGREILQNTVDLVQNN--LNLEVIYGDTD 767
Score = 110 (43.8 bits), Expect = 3.7e-16, Sum P(5) = 3.7e-16
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 1269 LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCT 1304
LV+EP+ G Y V++LDF SLYPS++ YN+CF T
Sbjct: 619 LVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTT 654
Score = 100 (40.3 bits), Expect = 3.7e-16, Sum P(5) = 3.7e-16
Identities = 32/121 (26%), Positives = 59/121 (48%)
Query: 1130 VGGRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSI-PFRVLTKWFASGPGRARYRC 1188
+ GR++ + + R +K Y++ +AET L+++ + P + + +SG A +
Sbjct: 446 IAGRLLCDTYLCSRDLLKEVSYSLTQLAETQLKKERKEVSPHDIPPMFQSSG---ALLKL 502
Query: 1189 VEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNY 1248
VEY A L LE+M L ++ T +L + G + L RVE +LL H + +
Sbjct: 503 VEYGETDACLALELMFHLSVLPLTRQLTNISGNLWGKTLQGSRAQRVEYLLLHAFHARKF 562
Query: 1249 L 1249
+
Sbjct: 563 I 563
Score = 50 (22.7 bits), Expect = 3.7e-16, Sum P(5) = 3.7e-16
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 1025 SKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERA 1063
S E L + + L D D+L+G +I G L L RA
Sbjct: 365 SSERALLNRLMIELSKLDCDVLVGHNISGFDLDVLLHRA 403
Score = 44 (20.5 bits), Expect = 3.7e-16, Sum P(5) = 3.7e-16
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 375 EENLIKLGPANYDYKDPEYLTCLKEGKILSAL 406
E+ ++K+ NY YKDP T L+ G+ AL
Sbjct: 186 EQYVLKI---NYPYKDPALPTDLR-GQHFHAL 213
>UNIPROTKB|A8IXV5 [details] [associations]
symbol:CHLREDRAFT_172920 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000084 "S phase of mitotic cell
cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
Pfam:PF00136 PRINTS:PR00106 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417
GO:GO:0045004 GO:GO:0006287 GO:GO:0043625 EMBL:DS496126
RefSeq:XP_001693242.1 EnsemblPlants:EDP03268 GeneID:5718970
KEGG:cre:CHLREDRAFT_172920 ProtClustDB:CLSN2921640 Uniprot:A8IXV5
Length = 350
Score = 153 (58.9 bits), Expect = 9.0e-13, Sum P(2) = 9.0e-13
Identities = 38/108 (35%), Positives = 56/108 (51%)
Query: 1198 LNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNHQ 1257
++ ++M +L + E+ARV G+ VL + S+L R AH QNY+ G +
Sbjct: 100 ISCDLMERLATLPEMLEMARVTGLTLTQVLYNAQMIKTWSLLHRNAHRQNYIV--GGARE 157
Query: 1258 VASQPAMECLPLVMEPES-GFYADPVVVLDFQSLYPSMMIAYNLCFCT 1304
S L +E ++ G Y PV LDF SLYPS+ A+NLC+ T
Sbjct: 158 AGSLTESPYLLHPIENKTAGLYRGPVATLDFASLYPSLFRAHNLCYTT 205
Score = 99 (39.9 bits), Expect = 9.0e-13, Sum P(2) = 9.0e-13
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 1347 PPKVRKGVLPRLLEEILSTRIMVKQAIKKL----APSQQILHR------IFNARQLALKL 1396
P VR G+LP +L +++ R + AIK L + + LH + + RQ ALK+
Sbjct: 209 PDDVRLGILPTILAALMTARAATRAAIKALGGGGSGAATDLHAAAAAAMVLDGRQKALKV 268
Query: 1397 IANVTYGYTAAGFSGRMPCAELA 1419
AN YG+T R+P A A
Sbjct: 269 TANALYGFTGGWKRRRLPAAAAA 291
>UNIPROTKB|Q7RBM5 [details] [associations]
symbol:PY06115 "DNA polymerase" species:73239 "Plasmodium
yoelii yoelii" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IBA] [GO:0008408
"3'-5' exonuclease activity" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] InterPro:IPR004578
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 TIGRFAMs:TIGR00592 EMBL:AABL01002033
RefSeq:XP_726706.1 ProteinModelPortal:Q7RBM5 STRING:Q7RBM5
GeneID:3792046 KEGG:pyo:PY06115 EuPathDB:PlasmoDB:PY06115
Uniprot:Q7RBM5
Length = 906
Score = 208 (78.3 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 77/271 (28%), Positives = 129/271 (47%)
Query: 1202 IMNQLDMINRTSELARVFGIDFF-SVLSRGSQYRVESMLLRLAHTQNYLAI-----SPG- 1254
+ N L ++ ++ +L ++ G + S+LS S+ VE LL H + Y+ P
Sbjct: 45 VCNVLQLVEKSRDLTKLSGYIWARSLLSYTSEC-VEYFLLHEYHKKKYITPLVAKKKPKI 103
Query: 1255 -NHQVASQPAMECLP-LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGK---- 1308
N S+ + L LV+EP G+Y V+ LDF SLYPS++I YN+CF T K
Sbjct: 104 ENDSNKSKNTAKYLGGLVLEPLCGYYDTYVLYLDFNSLYPSIIIEYNICFSTFNMKNYLA 163
Query: 1309 ILPSKENTLGVSSFRPDLHVLRDL------KDELLIPPNGVMYVPPKVRKGVLPRLLEEI 1362
+ S + + + ++ D KD+ + + + Y K + G+LP +L+++
Sbjct: 164 LSGSTSEEIQEETGKRNIIDYNDSDVNNLDKDDQVGDISNIDYFD-KTKPGILPSILKQL 222
Query: 1363 LSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSI 1422
+ R +K+ I ++ + + L++KLI+N YG R +A I
Sbjct: 223 VEKRAFIKKLIASEKNKEK--KELLLVQSLSIKLISNSIYG-CLGNTHNRFYAKYIASYI 279
Query: 1423 VQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
Q GR+ L+ F E E + KV+YGDTD
Sbjct: 280 TQKGRNLLQHT-KFKVEKE-FNLKVVYGDTD 308
>UNIPROTKB|F1NR19 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9031 "Gallus gallus"
[GO:0001882 "nucleoside binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000785 "chromatin" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003896 "DNA primase activity"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006270
"DNA replication initiation" evidence=IEA] [GO:0006272 "leading
strand elongation" evidence=IEA] [GO:0006273 "lagging strand
elongation" evidence=IEA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 GO:GO:0003677 GO:GO:0008283 GO:GO:0000785
GO:GO:0003682 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0016363 GO:GO:0000084 GO:GO:0006303 GO:GO:0003896
GO:GO:0003887 GO:GO:0006273 GO:GO:0006269 GO:GO:0006272
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658 OMA:GSGTDME
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:AADN02011218 EMBL:AADN02011219
EMBL:AADN02011220 EMBL:AADN02011221 EMBL:AADN02011222
EMBL:AADN02011223 IPI:IPI00588123 Ensembl:ENSGALT00000026316
Uniprot:F1NR19
Length = 1462
Score = 128 (50.1 bits), Expect = 3.8e-12, Sum P(6) = 3.8e-12
Identities = 40/109 (36%), Positives = 55/109 (50%)
Query: 1348 PKVRKGVLPRLLEEILSTRIMVKQAIKK--LAPSQQILHRIFNARQLALKLIANVTYGYT 1405
P + G+LP+ + +++ R VKQ +K+ L P L+ ++ RQ ALKL AN YG
Sbjct: 894 PSLEMGILPKEIRKLVERRRQVKQLMKQPDLNPD---LYLQYDIRQKALKLTANSMYG-- 948
Query: 1406 AAGFS-GRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
GFS R LA + GR L V +K +VIYGDTD
Sbjct: 949 CLGFSYSRFYAKPLAALVTHKGREILMHTKEMV---QKMNLEVIYGDTD 994
Score = 105 (42.0 bits), Expect = 3.8e-12, Sum P(6) = 3.8e-12
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 1269 LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCT 1304
LV++P+ GFY +++LDF SLYPS++ +N+CF T
Sbjct: 833 LVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 868
Score = 61 (26.5 bits), Expect = 3.8e-12, Sum P(6) = 3.8e-12
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 1018 DCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAER 1062
+ K+ + + E L F+ + DPD+++G +I G L L +R
Sbjct: 597 NAKIEIAATERTLLGFFLAKIHKIDPDVVVGHNIYGFDLEVLLQR 641
Score = 60 (26.2 bits), Expect = 3.8e-12, Sum P(6) = 3.8e-12
Identities = 26/98 (26%), Positives = 45/98 (45%)
Query: 482 LNSDDELLHETILSPLL---PET--TI--DKVLEKANTDYERESQKECQDILDSIEDEVN 534
++ DDE E + + L+ PET T+ DK +EK + +KE + S+ D
Sbjct: 237 MDFDDEDFDEPMEAELMGAVPETAETLKRDKEVEKKEMEQLESKKKEASALSHSLPDISC 296
Query: 535 VDGLEERNSSTVDPSNHPETSSHKKIPQIDGSSDDLYL 572
D +EE + V + + +P ++G +DD L
Sbjct: 297 WDKVEEDEADLVATDVQLDPNL---LPLVNGENDDQVL 331
Score = 56 (24.8 bits), Expect = 3.8e-12, Sum P(6) = 3.8e-12
Identities = 29/143 (20%), Positives = 63/143 (44%)
Query: 1132 GRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEY 1191
GR++ +V + ++ Y + + +L+ + +I + ++ P + +E
Sbjct: 678 GRMICDVEISAKELIRCKSYHLSELVHQILKTERVTILPEEIRNLYSDSP-HLLFM-LEN 735
Query: 1192 VVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAI 1251
AK L+IM +L+++ ++ + G + G R E +LL + ++Y+
Sbjct: 736 TWTDAKFILQIMCELNVLPLALQITNISGNVMSRTMMGGRSERNEFLLLHAFYEKDYIV- 794
Query: 1252 SPGNHQVASQPAMECLPLVMEPE 1274
P + QV +P + LV E E
Sbjct: 795 -P-DKQVFKKPLQK---LVDEDE 812
Score = 42 (19.8 bits), Expect = 1.3e-10, Sum P(5) = 1.3e-10
Identities = 19/62 (30%), Positives = 25/62 (40%)
Query: 622 PFSVSEQFNKDIETVSCNISSLCVTEVKDHGATGSLVGNELGKSFDALEREDADAHDIKE 681
PFSV Q K I VS E + + N KS A E E+ D +++
Sbjct: 155 PFSVQRQSPKVITPVSKKAPVQLRKEARPPASFHPKHPNYTAKSVTASE-ENEDTKYVQK 213
Query: 682 AT 683
AT
Sbjct: 214 AT 215
Score = 40 (19.1 bits), Expect = 3.8e-12, Sum P(6) = 3.8e-12
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 169 PDAFFPRKFNYSSKQASA 186
P +F P+ NY++K +A
Sbjct: 184 PASFHPKHPNYTAKSVTA 201
>MGI|MGI:99660 [details] [associations]
symbol:Pola1 "polymerase (DNA directed), alpha 1"
species:10090 "Mus musculus" [GO:0000084 "S phase of mitotic cell
cycle" evidence=ISO] [GO:0000166 "nucleotide binding" evidence=ISO]
[GO:0001882 "nucleoside binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005635 "nuclear envelope" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISO;IDA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0006260 "DNA
replication" evidence=ISO;IMP;IDA] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=ISO] [GO:0006270 "DNA replication
initiation" evidence=ISO] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISO] [GO:0006272 "leading
strand elongation" evidence=ISO] [GO:0006273 "lagging strand
elongation" evidence=ISO] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISO;IBA] [GO:0008283 "cell
proliferation" evidence=ISO] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] [GO:0016363 "nuclear matrix" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0017076 "purine
nucleotide binding" evidence=ISO] [GO:0019103 "pyrimidine
nucleotide binding" evidence=ISO] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
MGI:MGI:99660 GO:GO:0005737 GO:GO:0005635 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008283 GO:GO:0000785 GO:GO:0003682 GO:GO:0051539
GO:GO:0006270 GO:GO:0003690 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0016363 GO:GO:0000084 GO:GO:0008408 GO:GO:0017076
GO:GO:0006303 GO:GO:0003896 GO:GO:0003887 KO:K02320 GO:GO:0006273
GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891 CTD:5422
HOVERGEN:HBG080008 GO:GO:0019103 EMBL:D13543 EMBL:D17384
IPI:IPI00114051 PIR:S45628 RefSeq:NP_032918.1 UniGene:Mm.1923
ProteinModelPortal:P33609 SMR:P33609 IntAct:P33609 STRING:P33609
PhosphoSite:P33609 PaxDb:P33609 PRIDE:P33609
Ensembl:ENSMUST00000006856 GeneID:18968 KEGG:mmu:18968
InParanoid:P33609 OrthoDB:EOG43XV2M BindingDB:P33609
ChEMBL:CHEMBL2797 NextBio:295308 Bgee:P33609 CleanEx:MM_POLA1
Genevestigator:P33609 GermOnline:ENSMUSG00000006678 Uniprot:P33609
Length = 1465
Score = 129 (50.5 bits), Expect = 4.8e-12, Sum P(4) = 4.8e-12
Identities = 38/107 (35%), Positives = 55/107 (51%)
Query: 1348 PKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAA 1407
P + G+LPR + +++ R VKQ +K+ + ++ + ++ RQ ALKL AN YG
Sbjct: 908 PNLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQ-YDIRQKALKLTANSMYG--CL 964
Query: 1408 GFS-GRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
GFS R LA + GR L V +K +VIYGDTD
Sbjct: 965 GFSYSRFYAKPLAALVTYKGREILMHTKDMV---QKMNLEVIYGDTD 1008
Score = 105 (42.0 bits), Expect = 4.8e-12, Sum P(4) = 4.8e-12
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 1269 LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCT 1304
LV++P+ GFY +++LDF SLYPS++ +N+CF T
Sbjct: 847 LVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 882
Score = 65 (27.9 bits), Expect = 4.8e-12, Sum P(4) = 4.8e-12
Identities = 23/118 (19%), Positives = 52/118 (44%)
Query: 1132 GRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEY 1191
GR++ +V + + Y + + + +L+ + IP + ++ Y +E+
Sbjct: 691 GRMICDVEISAKELIHCKSYHLSELVQQILKTERIVIPTENIRNMYSES-SYLLY-LLEH 748
Query: 1192 VVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYL 1249
+ A+ L+IM +L+++ ++ + G L G R E +LL + NY+
Sbjct: 749 IWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYI 806
Score = 63 (27.2 bits), Expect = 4.8e-12, Sum P(4) = 4.8e-12
Identities = 25/103 (24%), Positives = 44/103 (42%)
Query: 1011 RSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGL 1070
+ ++ + KV + + E L F+ + DPDIL+G +I L L +R +
Sbjct: 603 KEVISKKNMKVEIAATERTLIGFFLAKVHKIDPDILVGHNICSFELEVLLQRINECKVPY 662
Query: 1071 LNDISRTPLESKIAAGD-SEISERGIT-DNMLAE-PVVAESLL 1110
+ I R + G S ER T M+ + + A+ L+
Sbjct: 663 WSKIGRLRRSNMPKLGSRSGFGERNATCGRMICDVEISAKELI 705
>ZFIN|ZDB-GENE-030114-9 [details] [associations]
symbol:pola1 "polymerase (DNA directed), alpha 1"
species:7955 "Danio rerio" [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;IBA] [GO:0006260 "DNA replication"
evidence=IEA;IBA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IBA] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IBA] [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IBA] [GO:0008408
"3'-5' exonuclease activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
ZFIN:ZDB-GENE-030114-9 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303
GO:GO:0003887 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:BX470095 IPI:IPI00898449
Ensembl:ENSDART00000128595 ArrayExpress:E7FB68 Bgee:E7FB68
Uniprot:E7FB68
Length = 1468
Score = 119 (46.9 bits), Expect = 5.9e-12, Sum P(5) = 5.9e-12
Identities = 37/103 (35%), Positives = 52/103 (50%)
Query: 1353 GVLPRLLEEILSTRIMVKQAIKK--LAPSQQILHRIFNARQLALKLIANVTYGYTAAGFS 1410
G+LP+ + +++ R VKQ +K+ L P L+ ++ RQ ALKL AN YG FS
Sbjct: 916 GILPKEIRKLVERRRQVKQLMKEPDLNPD---LYLQYDIRQKALKLTANSMYGCLGFSFS 972
Query: 1411 GRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
R LA + GR L V ++ +VIYGDTD
Sbjct: 973 -RFYAKPLAALVTHKGREILMHTKEMV---QRMNLEVIYGDTD 1011
Score = 105 (42.0 bits), Expect = 5.9e-12, Sum P(5) = 5.9e-12
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 1269 LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCT 1304
LV++P+ GFY +++LDF SLYPS++ +N+CF T
Sbjct: 851 LVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 886
Score = 76 (31.8 bits), Expect = 5.9e-12, Sum P(5) = 5.9e-12
Identities = 24/118 (20%), Positives = 54/118 (45%)
Query: 1132 GRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEY 1191
GR+V ++ + ++ Y + + +L+ + P +P + +++ Y +E
Sbjct: 696 GRLVCDIEISAKELIRCKSYNLTELVSQILKAERPVVPPENIRNFYSDST-HLLY-LLEL 753
Query: 1192 VVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYL 1249
AKL L+IM +L+++ ++ + G L G R E +LL H ++++
Sbjct: 754 TWMDAKLILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEYLLLHAFHERDFI 811
Score = 61 (26.5 bits), Expect = 5.9e-12, Sum P(5) = 5.9e-12
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 1021 VFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAER 1062
V + E L F+ + DPD+L+G DI G L L +R
Sbjct: 618 VEIAGTERALLGFFLAKMHKIDPDVLVGHDIFGFDLEVLLQR 659
Score = 45 (20.9 bits), Expect = 5.9e-12, Sum P(5) = 5.9e-12
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 614 KKKLWGSL--PFSVSEQFNKDIETVSCNISSLCVTEV 648
KKK GS PFSV Q K++ V + VT V
Sbjct: 190 KKKTLGSPMNPFSVKPQMPKELPEVHVSKPRPVVTRV 226
Score = 38 (18.4 bits), Expect = 0.00036, Sum P(5) = 0.00036
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 1440 NEKWKAKVIYGDTDRYTVC 1458
N + KV GDT Y +C
Sbjct: 1169 NSQGGKKVKAGDTVSYVIC 1187
>UNIPROTKB|Q59J88 [details] [associations]
symbol:Q59J88 "DNA polymerase" species:8517 "Iguana iguana"
[GO:0000084 "S phase of mitotic cell cycle" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005635
"nuclear envelope" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=ISS] [GO:0006270 "DNA replication
initiation" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] [GO:0006272 "leading
strand elongation" evidence=ISS] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISS] [GO:0008283 "cell
proliferation" evidence=ISS] [GO:0016363 "nuclear matrix"
evidence=ISS] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0000785
"chromatin" evidence=ISS] [GO:0003896 "DNA primase activity"
evidence=ISS] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005635 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
GO:GO:0003677 GO:GO:0008283 GO:GO:0003682 GO:GO:0006270
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084
GO:GO:0006303 GO:GO:0003887 GO:GO:0006273 GO:GO:0006269
GO:GO:0006272 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
HOVERGEN:HBG080008 EMBL:AB178527 Uniprot:Q59J88
Length = 1441
Score = 120 (47.3 bits), Expect = 7.6e-12, Sum P(4) = 7.6e-12
Identities = 38/102 (37%), Positives = 52/102 (50%)
Query: 1353 GVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFS-G 1411
G+LP+ + +++ R VKQ +K+ + L+ ++ RQ ALKL AN YG GFS
Sbjct: 880 GILPKEIRKLVERRRQVKQLMKQPDLNSD-LYLQYDIRQKALKLTANSMYG--CLGFSYS 936
Query: 1412 RMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
R LA + GR L V EK +VIYGDTD
Sbjct: 937 RFYAKPLAALVTFKGREILMHTKEMV---EKMNLEVIYGDTD 975
Score = 108 (43.1 bits), Expect = 7.6e-12, Sum P(4) = 7.6e-12
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 1269 LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCT 1304
LV+EP+ GFY +++LDF SLYPS++ +N+CF T
Sbjct: 814 LVLEPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 849
Score = 66 (28.3 bits), Expect = 7.6e-12, Sum P(4) = 7.6e-12
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 1011 RSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAER 1062
+ +V + K+ + + E L F+ + DPD+++G +I G L L +R
Sbjct: 571 KEIVKTKNAKIEIATTERTLLGFFLAKVHKIDPDVIVGHNIYGFDLELLLQR 622
Score = 66 (28.3 bits), Expect = 7.6e-12, Sum P(4) = 7.6e-12
Identities = 25/118 (21%), Positives = 53/118 (44%)
Query: 1132 GRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEY 1191
GR++ +V + ++ Y + + +L+ + ++P + + S P + Y VE
Sbjct: 659 GRMICDVEISAKELIRCKSYHLTELVNQILKVERITVPPEEIRNMY-SDPRQLLYM-VEN 716
Query: 1192 VVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYL 1249
AK L+IM L+++ ++ + G L G R E +LL + +N++
Sbjct: 717 TWTDAKYILQIMCDLNVLPLALQITNIAGNVMSRTLMGGRAERNEYLLLHAFYEKNFI 774
Score = 40 (19.1 bits), Expect = 0.00052, Sum P(4) = 0.00052
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 1436 FVNENEKWKAKVIYGDTDRYTVC 1458
++N E K K GDT Y +C
Sbjct: 1131 WINSQEGRKLKA--GDTVSYVIC 1151
>UNIPROTKB|I3LIH4 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9823 "Sus scrofa"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
Ensembl:ENSSSCT00000027952 OMA:ESHETTT Uniprot:I3LIH4
Length = 497
Score = 126 (49.4 bits), Expect = 8.9e-12, Sum P(3) = 8.9e-12
Identities = 38/107 (35%), Positives = 55/107 (51%)
Query: 1348 PKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAA 1407
P + G+LPR + +++ R VKQ +K+ + ++ + ++ RQ ALKL AN YG
Sbjct: 216 PGLEMGILPREIRKLVERRRQVKQLMKQPDLNPDLVLQ-YDIRQKALKLTANSMYG--CL 272
Query: 1408 GFS-GRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
GFS R LA + GR L V +K +VIYGDTD
Sbjct: 273 GFSYSRFYAKPLAALVTYKGREILMHTKEMV---QKMNLEVIYGDTD 316
Score = 105 (42.0 bits), Expect = 8.9e-12, Sum P(3) = 8.9e-12
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 1269 LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCT 1304
LV++P+ GFY +++LDF SLYPS++ +N+CF T
Sbjct: 155 LVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 190
Score = 64 (27.6 bits), Expect = 8.9e-12, Sum P(3) = 8.9e-12
Identities = 21/104 (20%), Positives = 45/104 (43%)
Query: 1146 VKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQ 1205
++ Y + + + +L+ + IP + ++ Y +E+ AK L+IM +
Sbjct: 13 IRCKSYHLSELVQHILKTERVVIPMENVRNMYSES-SHLLY-LLEHTWKDAKFILQIMCE 70
Query: 1206 LDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYL 1249
L+++ ++ + G L G R E +LL + NY+
Sbjct: 71 LNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYI 114
>SGD|S000005046 [details] [associations]
symbol:POL1 "Catalytic subunit of the DNA polymerase I
alpha-primase complex" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001882
"nucleoside binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IMP] [GO:0006270 "DNA replication
initiation" evidence=IC] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;IDA] [GO:0006278 "RNA-dependent DNA
replication" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA;IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0000076
"DNA replication checkpoint" evidence=IBA] [GO:0000084 "S phase of
mitotic cell cycle" evidence=IBA] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=IBA] [GO:0000734 "gene conversion
at mating-type locus, DNA repair synthesis" evidence=IBA]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=IBA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IDA] [GO:0006279 "premeiotic DNA
replication" evidence=IMP] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IDA] [GO:0006273 "lagging
strand elongation" evidence=IC] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 SGD:S000005046 GO:GO:0005739
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 EMBL:BK006947
GO:GO:0051539 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0006278 EMBL:Z50161 GO:GO:0000084 GO:GO:0000076 PDB:3OIQ
PDBsum:3OIQ GO:GO:0006279 GO:GO:0003887 RefSeq:NP_014297.3
GeneID:855621 KEGG:sce:YNL102W KO:K02320 GO:GO:0006273
GO:GO:0006269 eggNOG:COG0417 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 PDB:3FLO PDBsum:3FLO HOGENOM:HOG000163524
OrthoDB:EOG4K0TWK GO:GO:0000734 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 EMBL:J03268 EMBL:Z71378 EMBL:Z12126 PIR:S58250
RefSeq:NP_014303.3 ProteinModelPortal:P13382 SMR:P13382
DIP:DIP-2526N IntAct:P13382 MINT:MINT-421899 STRING:P13382
PaxDb:P13382 PeptideAtlas:P13382 PRIDE:P13382 EnsemblFungi:YNL102W
GeneID:855628 KEGG:sce:YNL096C CYGD:YNL102w
GeneTree:ENSGT00550000074891 KO:K02993 OMA:CASIQGT
EvolutionaryTrace:P13382 NextBio:979813 ArrayExpress:P13382
Genevestigator:P13382 GermOnline:YNL102W Uniprot:P13382
Length = 1468
Score = 118 (46.6 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
Identities = 41/111 (36%), Positives = 55/111 (49%)
Query: 1346 VPP-KVRKGVLPRLLEEILSTRIMVKQAIK-KLAPSQQILHRIFNARQLALKLIANVTYG 1403
VPP +V +GVLPRLL ++ R VK+ +K + P +++ I RQ ALKL AN YG
Sbjct: 896 VPPSEVDQGVLPRLLANLVDRRREVKKVMKTETDPHKRVQCDI---RQQALKLTANSMYG 952
Query: 1404 YTAAGF-SGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
G+ + R LA + GR L E V+YGDTD
Sbjct: 953 --CLGYVNSRFYAKPLAMLVTNKGREILMNTRQLA---ESMNLLVVYGDTD 998
Score = 107 (42.7 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 1269 LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCT 1304
LV EPE G + + V+V+DF SLYPS++ +N+CF T
Sbjct: 847 LVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTT 882
Score = 68 (29.0 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
Identities = 24/99 (24%), Positives = 46/99 (46%)
Query: 482 LNSDDELLHETILSPLL---PETTIDKVLEKANTDYERESQK-----ECQDILDSIEDEV 533
+N +DE H+ +S + P+++ DK LE ++ + +S+K + QD+LD +E+
Sbjct: 182 VNGNDESSHDAGISKKVKIDPDSSTDKYLEIESSPLKLQSRKLRYANDVQDLLDDVENSP 241
Query: 534 NVDGLEERNSSTVDPSNHPETSSHKKIPQIDGSSDDLYL 572
V + +N P S + S +D+ L
Sbjct: 242 VVATKRQNVLQDTLLANPPSAQSLADEEDDEDSDEDIIL 280
Score = 66 (28.3 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
Identities = 23/81 (28%), Positives = 38/81 (46%)
Query: 1020 KVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPL 1079
+V + + E + S F +L DPD+++G +Q L LA R L I + I R
Sbjct: 609 RVRLFNNEKAMLSCFCAMLKVEDPDVIIGHRLQNVYLDVLAHRMHDLNIPTFSSIGRRLR 668
Query: 1080 ES---KIAAGDSEISERGITD 1097
+ K G+S ++ I+D
Sbjct: 669 RTWPEKFGRGNSNMNHFFISD 689
Score = 39 (18.8 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 1070 LLNDISRTPLESKIAAGDSEISERGITDNMLAEPVVAESL 1109
LL+D+ +P+ +A + + D +LA P A+SL
Sbjct: 233 LLDDVENSPV---VATKRQNV----LQDTLLANPPSAQSL 265
Score = 37 (18.1 bits), Expect = 9.9e-07, Sum P(3) = 9.9e-07
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 383 PANYDYKDPEY 393
P + DY++P+Y
Sbjct: 730 PLDIDYQNPQY 740
>ASPGD|ASPL0000000737 [details] [associations]
symbol:AN10755 species:162425 "Emericella nidulans"
[GO:0033314 "mitotic DNA replication checkpoint" evidence=IEA]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0000734 "gene conversion at mating-type locus,
DNA repair synthesis" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0003688 "DNA replication origin
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 EMBL:BN001301 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 OMA:GSGTDME InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 EnsemblFungi:CADANIAT00007097 Uniprot:C8V3I8
Length = 1459
Score = 122 (48.0 bits), Expect = 3.9e-11, Sum P(4) = 3.9e-11
Identities = 42/113 (37%), Positives = 58/113 (51%)
Query: 1346 VPPK-VRKGVLPRLLEEILSTRIMVKQAIK-KLAPSQQILHRIFNARQLALKLIANVTYG 1403
VP +G+LPRL+ ++ R VK+ +K K A +Q+ +++ +QLA KL AN YG
Sbjct: 897 VPASDAEQGILPRLIATLVGRRREVKKLMKDKRATPEQLA--LWDTKQLAFKLTANSMYG 954
Query: 1404 ---YTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
YT + F R P A L GR L V E + +VIYGDTD
Sbjct: 955 CLGYTQSRFYAR-PLAMLTTFK---GREILRSTKELV---ESKQLRVIYGDTD 1000
Score = 111 (44.1 bits), Expect = 3.9e-11, Sum P(4) = 3.9e-11
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 1269 LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCT 1304
LV EPE G Y V+V+DF SLYPS++ YN+CF T
Sbjct: 844 LVFEPERGLYDRYVLVMDFNSLYPSIIQEYNICFTT 879
Score = 68 (29.0 bits), Expect = 3.9e-11, Sum P(4) = 3.9e-11
Identities = 26/106 (24%), Positives = 40/106 (37%)
Query: 1030 LFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHL---GIGLLNDISRTPLESKIAAG 1086
L S F+ + DPD+LMG +Q L L R G L + R G
Sbjct: 616 LLSKFLALFERMDPDVLMGHQLQEVDLSILLSRLKEKKTPGWHRLGRLKRGEWPKNFNKG 675
Query: 1087 DSEISERGITDNMLAEPVVAESLLAKDAIIE-DEWGRTHASGLHVG 1131
+ER + L V + + K +++ W T L++G
Sbjct: 676 GGFFTERHLVAGRLVCDVAND--MGKSLMMKCQSWSLTEMCDLYLG 719
Score = 52 (23.4 bits), Expect = 3.9e-11, Sum P(4) = 3.9e-11
Identities = 25/106 (23%), Positives = 43/106 (40%)
Query: 878 PVLEEMHQEADEMISTEPTPDLNGVTAIMHNEGHIAEPNACADCLQDISQISGPDGRSKP 937
PV + + +++ +I EP D + + ++ GH A A + P + +P
Sbjct: 230 PVTKAVERKSAVLIKEEPEDDDDNMMEVVQATGH---DEAKAPSVNISGSRPPPKIKKQP 286
Query: 938 --TPLSQIGFQDPASAGAG-----EQLTLLSIEVQAESR--GDLRP 974
TP S + A A +L +L+ E+R G LRP
Sbjct: 287 YATPASSSPVKSAADVNASWNDVRNKLNVLNSPASTETRAFGKLRP 332
Score = 38 (18.4 bits), Expect = 9.4e-10, Sum P(4) = 9.4e-10
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 868 HSSLKGSDIRPVLEEMHQEADEMIS 892
H + +D +E+++ E D+M+S
Sbjct: 393 HKGGRETDEEVDMEDVYHEVDQMMS 417
>UNIPROTKB|Q5B0J8 [details] [associations]
symbol:AN5932.2 "DNA polymerase" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000734 "gene conversion at
mating-type locus, DNA repair synthesis" evidence=IBA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004399 InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 GO:GO:0001882 SUPFAM:SSF53098 EMBL:AACD01000101
GO:GO:0009228 GO:GO:0008408 GO:GO:0006303 InterPro:IPR013749
Pfam:PF08543 GO:GO:0003887 KO:K02320 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 OrthoDB:EOG4K0TWK GO:GO:0000734
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
Gene3D:1.20.910.10 InterPro:IPR016084 SUPFAM:SSF48613
InterPro:IPR004305 Pfam:PF03070 GO:GO:0008972 TIGRFAMs:TIGR00097
RefSeq:XP_663536.1 ProteinModelPortal:Q5B0J8 STRING:Q5B0J8
GeneID:2871177 KEGG:ani:AN5932.2 Uniprot:Q5B0J8
Length = 2019
Score = 122 (48.0 bits), Expect = 1.5e-10, Sum P(4) = 1.5e-10
Identities = 42/113 (37%), Positives = 58/113 (51%)
Query: 1346 VPPK-VRKGVLPRLLEEILSTRIMVKQAIK-KLAPSQQILHRIFNARQLALKLIANVTYG 1403
VP +G+LPRL+ ++ R VK+ +K K A +Q+ +++ +QLA KL AN YG
Sbjct: 897 VPASDAEQGILPRLIATLVGRRREVKKLMKDKRATPEQLA--LWDTKQLAFKLTANSMYG 954
Query: 1404 ---YTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
YT + F R P A L GR L V E + +VIYGDTD
Sbjct: 955 CLGYTQSRFYAR-PLAMLTTFK---GREILRSTKELV---ESKQLRVIYGDTD 1000
Score = 111 (44.1 bits), Expect = 1.5e-10, Sum P(4) = 1.5e-10
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 1269 LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCT 1304
LV EPE G Y V+V+DF SLYPS++ YN+CF T
Sbjct: 844 LVFEPERGLYDRYVLVMDFNSLYPSIIQEYNICFTT 879
Score = 68 (29.0 bits), Expect = 1.5e-10, Sum P(4) = 1.5e-10
Identities = 26/106 (24%), Positives = 40/106 (37%)
Query: 1030 LFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHL---GIGLLNDISRTPLESKIAAG 1086
L S F+ + DPD+LMG +Q L L R G L + R G
Sbjct: 616 LLSKFLALFERMDPDVLMGHQLQEVDLSILLSRLKEKKTPGWHRLGRLKRGEWPKNFNKG 675
Query: 1087 DSEISERGITDNMLAEPVVAESLLAKDAIIE-DEWGRTHASGLHVG 1131
+ER + L V + + K +++ W T L++G
Sbjct: 676 GGFFTERHLVAGRLVCDVAND--MGKSLMMKCQSWSLTEMCDLYLG 719
Score = 52 (23.4 bits), Expect = 1.5e-10, Sum P(4) = 1.5e-10
Identities = 25/106 (23%), Positives = 43/106 (40%)
Query: 878 PVLEEMHQEADEMISTEPTPDLNGVTAIMHNEGHIAEPNACADCLQDISQISGPDGRSKP 937
PV + + +++ +I EP D + + ++ GH A A + P + +P
Sbjct: 230 PVTKAVERKSAVLIKEEPEDDDDNMMEVVQATGH---DEAKAPSVNISGSRPPPKIKKQP 286
Query: 938 --TPLSQIGFQDPASAGAG-----EQLTLLSIEVQAESR--GDLRP 974
TP S + A A +L +L+ E+R G LRP
Sbjct: 287 YATPASSSPVKSAADVNASWNDVRNKLNVLNSPASTETRAFGKLRP 332
Score = 38 (18.4 bits), Expect = 3.6e-09, Sum P(4) = 3.6e-09
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 868 HSSLKGSDIRPVLEEMHQEADEMIS 892
H + +D +E+++ E D+M+S
Sbjct: 393 HKGGRETDEEVDMEDVYHEVDQMMS 417
>UNIPROTKB|Q7SBT9 [details] [associations]
symbol:NCU07870 "DNA polymerase" species:367110 "Neurospora
crassa OR74A" [GO:0000734 "gene conversion at mating-type locus,
DNA repair synthesis" evidence=IBA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 HOGENOM:HOG000163524 OrthoDB:EOG4K0TWK GO:GO:0000734
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 OMA:CASIQGT
EMBL:AABX02000040 RefSeq:XP_963131.2 STRING:Q7SBT9
EnsemblFungi:EFNCRT00000007540 GeneID:3879279 KEGG:ncr:NCU07870
Uniprot:Q7SBT9
Length = 1479
Score = 128 (50.1 bits), Expect = 4.8e-10, Sum P(4) = 4.8e-10
Identities = 42/117 (35%), Positives = 59/117 (50%)
Query: 1341 NGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIK-KLAPSQQILHRIFNARQLALKLIAN 1399
+ V VP + +G+LP+L+ ++S R VK +K K A +++ ++ +QLALKL AN
Sbjct: 900 DAVPEVPKEQAQGILPKLIATLVSRRRQVKSLMKDKNATPEELA--TWDIKQLALKLTAN 957
Query: 1400 VTYG---YTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
YG YT + F R P A L GR L N +VIYGDTD
Sbjct: 958 SMYGCLGYTKSRFYAR-PLAVLT---TYKGREILRSTKELAESNS---LQVIYGDTD 1007
Score = 112 (44.5 bits), Expect = 4.8e-10, Sum P(4) = 4.8e-10
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 1269 LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCT 1304
LV EPE G Y V+V+DF SLYPS++ YN+CF T
Sbjct: 854 LVFEPEKGLYDKFVLVMDFNSLYPSIIQEYNICFTT 889
Score = 58 (25.5 bits), Expect = 4.8e-10, Sum P(4) = 4.8e-10
Identities = 24/97 (24%), Positives = 42/97 (43%)
Query: 1042 DPDILMGWDIQGGS----LGFLAERAAHLGIGLLNDISRTPLESKIAA-GDSEISERGIT 1096
DPD+++G ++G L L E+ H L + R+ S I G + +ER I
Sbjct: 637 DPDVILGHQLEGVDYSILLNRLHEKKTHQW-SRLGRLRRSQWPSSIVKMGGNVFAERQIM 695
Query: 1097 DNMLAEPVVAESLLAKDAIIEDE-WGRTHASGLHVGG 1132
L + ++ K + + + W T L++GG
Sbjct: 696 SGRLLCDLANDA--GKSVMTKCQTWSLTEMCSLYLGG 730
Score = 44 (20.5 bits), Expect = 4.8e-10, Sum P(4) = 4.8e-10
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 653 ATGSLVGNELGKSFDALEREDADAHDIKEATAVTGGSVRDLMRRKRSYRESSECEP 708
AT G K + E ED D ++ AVT SV + R ++ + EP
Sbjct: 242 ATRRTFGRPEPKKNEDDEDEDEDMMEVAHTGAVTAASVN--ISASRQIKKILKTEP 295
>UNIPROTKB|Q9DE46 [details] [associations]
symbol:pola1 "DNA polymerase alpha catalytic subunit"
species:8355 "Xenopus laevis" [GO:0000084 "S phase of mitotic cell
cycle" evidence=ISS] [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005635 "nuclear envelope" evidence=ISS] [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] [GO:0006272 "leading strand elongation"
evidence=ISS] [GO:0006273 "lagging strand elongation" evidence=ISS]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0016363 "nuclear matrix" evidence=ISS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0000785 "chromatin"
evidence=ISS] [GO:0003896 "DNA primase activity" evidence=ISS]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005635
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0008283 GO:GO:0003682 GO:GO:0051539
GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0016363
GO:GO:0000084 GO:GO:0006303 GO:GO:0003887 KO:K02320 GO:GO:0006273
GO:GO:0006269 GO:GO:0006272 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
CTD:5422 HOVERGEN:HBG080008 EMBL:AF202992 RefSeq:NP_001082055.1
UniGene:Xl.7596 ProteinModelPortal:Q9DE46 SMR:Q9DE46
MINT:MINT-7386218 GeneID:398200 KEGG:xla:398200
Xenbase:XB-GENE-1000552 Uniprot:Q9DE46
Length = 1458
Score = 121 (47.7 bits), Expect = 6.5e-10, Sum P(5) = 6.5e-10
Identities = 40/104 (38%), Positives = 53/104 (50%)
Query: 1353 GVLPRLLEEILSTRIMVKQAIKK--LAPSQQILHRIFNARQLALKLIANVTYGYTAAGFS 1410
G+LPR + +++ R VKQ +K+ L P L+ ++ RQ ALKL AN YG GFS
Sbjct: 905 GILPREIRKLVERRRHVKQLMKQPDLNPD---LYLQYDIRQKALKLTANSMYG--CLGFS 959
Query: 1411 -GRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
R LA + GR L V +K +VIYGDTD
Sbjct: 960 YSRFYAKPLAALVTHQGREILLHTKEMV---QKMNLEVIYGDTD 1000
Score = 112 (44.5 bits), Expect = 6.5e-10, Sum P(5) = 6.5e-10
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 1269 LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCT 1304
LV+EP+ GFY +++LDF SLYPS++ YN+CF T
Sbjct: 842 LVLEPKVGFYDKFILLLDFNSLYPSIIQEYNICFTT 877
Score = 60 (26.2 bits), Expect = 6.5e-10, Sum P(5) = 6.5e-10
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 1018 DCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISR 1076
+ + + E L F+ + DPD+++G DI G L L +R + + I R
Sbjct: 606 NANIEIALTERTLLGFFLAKIHKIDPDVIVGHDIYGFDLEVLLQRINSCKVPFWSKIGR 664
Score = 50 (22.7 bits), Expect = 6.5e-10, Sum P(5) = 6.5e-10
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 1196 AKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQN 1247
AK L+IM +L+++ ++ + G L G R E +LL A T+N
Sbjct: 749 AKFILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEYLLLH-AFTEN 799
Score = 42 (19.8 bits), Expect = 6.5e-10, Sum P(5) = 6.5e-10
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 170 DAFFPRKFNYSSKQASADFQV 190
D FP +N + KQ +A+ ++
Sbjct: 591 DCIFPYDYNEAVKQKNANIEI 611
>UNIPROTKB|Q23AJ0 [details] [associations]
symbol:TTHERM_00424700 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
TIGRFAMs:TIGR00592 EMBL:GG662724 RefSeq:XP_001013747.2
UniGene:Tth.5627 ProteinModelPortal:Q23AJ0 EnsemblProtists:EAR93502
GeneID:7845641 KEGG:tet:TTHERM_00424700 ProtClustDB:CLSZ2848284
Uniprot:Q23AJ0
Length = 1396
Score = 170 (64.9 bits), Expect = 7.5e-10, Sum P(3) = 7.5e-10
Identities = 63/205 (30%), Positives = 95/205 (46%)
Query: 1270 VMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKE-------NTLGVSSF 1322
V EPE G Y + +V+LDF SLYPS++ +N+CF TC+ +P + N +
Sbjct: 799 VFEPEKGLYNEYIVLLDFNSLYPSIIQEFNVCFTTCVRDPIPLEMQMAPFLGNKKAAIQY 858
Query: 1323 RPDLHVLR---------DLKDELLIPPNGVMYVPP-KVRKGVLPRLLEEILSTRIMVKQA 1372
+ + D ++E ++ + V+ P +V KG+ P L IL + ++
Sbjct: 859 SKNQNTKENKMQDEDEEDNENEQIVQTHDVL--PTIEVIKGIAP--LPSILQYLVEQRKV 914
Query: 1373 IKKLAPSQ---QILHRIFNARQLALKLIANVTYGYTAAGFSG-RMPCAELADSIVQCGRS 1428
+K Q Q++ + + +Q A KL+AN YG GFS R LA I GR
Sbjct: 915 VKNQIKGQKDPQVIETL-DIKQKAFKLVANSMYG--CLGFSSSRFYAMPLASFITAKGRH 971
Query: 1429 TLEKAISFVNENEKWKAKVIYGDTD 1453
L + V E VIYGDTD
Sbjct: 972 ILFDSKKIV---EDMGYSVIYGDTD 993
Score = 78 (32.5 bits), Expect = 7.5e-10, Sum P(3) = 7.5e-10
Identities = 39/169 (23%), Positives = 75/169 (44%)
Query: 1088 SEISERGITD-NMLAEPVVAESLLAKDAIIEDEWGRTHASGLHVGGRIVLNVWRLMRGEV 1146
+ I E+GI N+L++ + ++ + D I T + + + GR++++ + V
Sbjct: 594 TRIREKGIRKWNLLSKLI---NIGSSD--IPKYGSSTFKTKMAMKGRLLVDTLLSSQEFV 648
Query: 1147 KLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEYVVGRAKLNLEIMNQL 1206
YT+EA+A+ + + +IP I + + FA+ + V+ L IM L
Sbjct: 649 NCVEYTLEALAQKLFKIEIPRIDAKAYQQKFATY--KLLNSLVDDTYQDIDYALRIMYHL 706
Query: 1207 DMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGN 1255
++ T +L + G + L R E +LL + NY + P N
Sbjct: 707 QIVPLTKQLTSICGNIWMGSLQNQRAERNEMLLLHKFNQLNY--VYPDN 753
Score = 65 (27.9 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 21/79 (26%), Positives = 34/79 (43%)
Query: 1016 IPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDIS 1075
+P+ F C E++L F+ DPDI++ D+ + R GI N +S
Sbjct: 550 LPETTKF-CLNELNLLEQFLVHFNEIDPDIVVAHDLYSTVFEIILTRIREKGIRKWNLLS 608
Query: 1076 RTPLESKIAAGDSEISERG 1094
+ I G S+I + G
Sbjct: 609 KL-----INIGSSDIPKYG 622
Score = 43 (20.2 bits), Expect = 7.5e-10, Sum P(3) = 7.5e-10
Identities = 13/57 (22%), Positives = 31/57 (54%)
Query: 515 ERESQKECQDILDS-IEDEVNVDGLEERNSSTVDPSNHPETSSHKK------IPQID 564
+++ +E +D D IE+E ++ ++ ++ ++ +N +++KK IP ID
Sbjct: 76 DKKKYREIEDEFDQEIEEEEELNKKKKTKNTILNYTNTTAVTNNKKKAISKQIPDID 132
Score = 37 (18.1 bits), Expect = 3.0e-09, Sum P(3) = 3.0e-09
Identities = 7/39 (17%), Positives = 24/39 (61%)
Query: 504 DKV--LEKANTDYERESQKECQDILDSIEDEVNVDGLEE 540
DK+ LE+ N + +++++ + + +D+++++ E+
Sbjct: 3 DKLTRLERLNKEVKKQNKLKQHSKNNRFDDDMDIEAYED 41
>UNIPROTKB|I3LKI3 [details] [associations]
symbol:I3LKI3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006133
InterPro:IPR012337 Pfam:PF03104 GO:GO:0006260 GO:GO:0003676
SUPFAM:SSF53098 GO:GO:0003887 GeneTree:ENSGT00550000074640
EMBL:CT997815 EMBL:CU915528 Ensembl:ENSSSCT00000025331
Uniprot:I3LKI3
Length = 296
Score = 145 (56.1 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 116 CSLVRAKKGGAVFDKSLQPHESHIPFLLQFLVDYNLYGMGHLHLSKLKFR 165
C L+++ GA+ +K QPHE+HIP+LLQ +DYNLYGM ++L+ +KFR
Sbjct: 59 CELLQS---GAIMNKFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFR 105
Score = 54 (24.1 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 21/82 (25%), Positives = 34/82 (41%)
Query: 485 DDELLHETILSPLLPETTIDKVLEKANTDYERESQKECQ----DILDSI-EDEVNVDGLE 539
DDE+ IL + P++T + ++ D E Q L +I EDE
Sbjct: 139 DDEIPSSLILEGVEPQSTCELEVDAVAADILNRLDIEAQIGGNPGLQAIWEDEKQ----R 194
Query: 540 ERNSSTVDPSNHPETSSHKKIP 561
RN + +HPE+ + +P
Sbjct: 195 RRNRNETSQISHPESQDRRFVP 216
Score = 46 (21.3 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 92 ISLALEKALKVK-GSAGSKRQHVHECSLV 119
++ ++++AL V G S QHV + SLV
Sbjct: 1 MAFSIDRALNVALGKPSSTAQHVFKVSLV 29
Score = 45 (20.9 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 512 TDYERESQKECQDILDSIEDEVNVDGLEERNSSTVDPSNHPETSSHKKI--PQI 563
T+ E++ QK Q+IL + V + G + + + + S E + H +I P+I
Sbjct: 218 TESEKKFQKRLQEILKQNDFSVTLSGSVDYSDGSQEFS--AELTLHSEILSPEI 269
Score = 38 (18.4 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 489 LHETILSPLLPETTIDKVLEKANTDYERESQK 520
LH ILSP + + T +LE + D E K
Sbjct: 260 LHSEILSPEILQCTPANMLE-VHKDTELSKGK 290
>DICTYBASE|DDB_G0282191 [details] [associations]
symbol:polA1 "DNA polymerase alpha catalytic subunit"
species:44689 "Dictyostelium discoideum" [GO:0006260 "DNA
replication" evidence=IEA;IBA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA;IBA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0001882 "nucleoside binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0003896 "DNA
primase activity" evidence=ISS] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006272 "leading strand elongation"
evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=ISS;IBA] [GO:0000731 "DNA synthesis involved in
DNA repair" evidence=ISS] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0005634 "nucleus"
evidence=IEA;IBA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0282191 GO:GO:0000166
GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0051539
GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098 EMBL:AAFI02000046
GO:GO:0008408 GO:GO:0006303 GO:GO:0000731 GO:GO:0003887 KO:K02320
GO:GO:0006273 GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
TIGRFAMs:TIGR00592 OMA:CASIQGT RefSeq:XP_640277.1
ProteinModelPortal:Q54SV8 STRING:Q54SV8 EnsemblProtists:DDB0232274
GeneID:8623451 KEGG:ddi:DDB_G0282191 Uniprot:Q54SV8
Length = 1509
Score = 153 (58.9 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 40/108 (37%), Positives = 61/108 (56%)
Query: 1347 PPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTA 1406
P + KG+LP++L ++S R +K+ +++ +I+ ++ +Q A+KLIAN YG
Sbjct: 946 PSSIEKGILPKVLHGLVSKRREIKKRMEQ--EKNKIIKAQYDIQQQAVKLIANSMYG--C 1001
Query: 1407 AGFS-GRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
GFS R LA+ + + GR L+K S VN K VIYGDTD
Sbjct: 1002 LGFSHSRFYALPLAELVTRKGRENLQKGASIVN---KMCYDVIYGDTD 1046
Score = 120 (47.3 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 62/285 (21%), Positives = 127/285 (44%)
Query: 1129 HVGGRIVLNVWRLMRGEV-KLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYR 1187
H+ GR++ + + + + + K Y++ +++ L P I + + +F + +
Sbjct: 743 HISGRLICDSYLVCKEFLPKEKNYSLVELSKNQLSINKPEINYLSIEPYFETTKKLNIF- 801
Query: 1188 CVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQN 1247
+E + ++ +L + T +L + G + L R+E +LL H +
Sbjct: 802 -IEINENDCYIIFLLIFKLLVFPLTKQLTNLAGNQWDKSLKSNRAERIEYLLLHNFHEKK 860
Query: 1248 YL--------AISPGNHQVASQP---AMECLPLVMEPESGFYADPVVVLDFQSLYPSMMI 1296
YL + S G A A LV++P+ FY VV+LDF SLYPS++
Sbjct: 861 YLLPDKIYQKSSSSGGGGGAKDKDNHAAYSGGLVLDPKIDFYDRYVVLLDFNSLYPSIIQ 920
Query: 1297 AYNLCFCTCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVPPKVRKGVLP 1356
YN+CF T + ++ +++ + P + + + ++L +G++ +++K +
Sbjct: 921 EYNVCFTT-INRV--KRDDGKWEEAMPPPSSIEKGILPKVL---HGLVSKRREIKKRMEQ 974
Query: 1357 RLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVT 1401
+ I + + +QA+K +A S ++R AL L VT
Sbjct: 975 EKNKIIKAQYDIQQQAVKLIANSMYGCLGFSHSRFYALPLAELVT 1019
Score = 68 (29.0 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 1021 VFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGI 1068
V +C+ E +L S F + + + DPD+ G +I G + + +R L +
Sbjct: 677 VTICTSERNLLSFFCETVLNADPDVFAGHNIIGYDIEVILDRLEKLKV 724
Score = 50 (22.7 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 673 DADAHDIKEATAVTGGSVRDLMRRKRSYRESSECEPPRVK--RVNVTGEQKNAL 724
D + +D + A+ G + +K+S ++ E P+VK RV T E+KN +
Sbjct: 111 DGENNDSDQEEAIEVGRKKKRQVKKKSKKD--ENGEPKVKTPRVKKTKEKKNEI 162
Score = 42 (19.8 bits), Expect = 7.0e-07, Sum P(3) = 7.0e-07
Identities = 14/69 (20%), Positives = 30/69 (43%)
Query: 719 EQKNALSMCEKQLEFDTLQNDECEKCPLKGGTGISTVCKENMESPSPFDTKKEDASVSVG 778
E+K + E++ EFD + + ++G +G +E ++ + + +D S
Sbjct: 42 ERKRLEQLKEQETEFDKEERKRKNRDFIEGDSGY----RETSDNEDEDEDEDDDGDNSDD 97
Query: 779 DWKADNCKE 787
D+ D E
Sbjct: 98 DYSLDEDDE 106
>UNIPROTKB|Q755Y6 [details] [associations]
symbol:AER381C "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000734 "gene conversion at mating-type
locus, DNA repair synthesis" evidence=IBA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 EMBL:AE016818
GenomeReviews:AE016818_GR GO:GO:0003887 KO:K02320 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 OrthoDB:EOG4K0TWK GO:GO:0000734
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 OMA:CASIQGT
RefSeq:NP_985237.1 ProteinModelPortal:Q755Y6 STRING:Q755Y6
EnsemblFungi:AAS53061 GeneID:4621453 KEGG:ago:AGOS_AER381C
PhylomeDB:Q755Y6 Uniprot:Q755Y6
Length = 1435
Score = 111 (44.1 bits), Expect = 5.3e-07, Sum P(4) = 5.3e-07
Identities = 38/111 (34%), Positives = 51/111 (45%)
Query: 1346 VPPKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNA--RQLALKLIANVTYG 1403
VP + + GVLPRLL ++ R + +KKL ++ H+ RQ ALKL AN YG
Sbjct: 871 VPTEAKPGVLPRLLANLVERR----REVKKLMNAETDAHKKAECDIRQQALKLTANSMYG 926
Query: 1404 YTAAGF-SGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
G+ + R LA + GR L E V+YGDTD
Sbjct: 927 --CLGYVNSRFYAKPLAMLVTNKGREILMNTRQLA---ESLGLAVVYGDTD 972
Score = 100 (40.3 bits), Expect = 5.3e-07, Sum P(4) = 5.3e-07
Identities = 16/36 (44%), Positives = 27/36 (75%)
Query: 1269 LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCT 1304
LV +P+ G + + ++V+DF SLYPS++ +N+CF T
Sbjct: 822 LVFDPDKGLHKNYILVMDFNSLYPSIIQEFNICFTT 857
Score = 59 (25.8 bits), Expect = 5.3e-07, Sum P(4) = 5.3e-07
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 1030 LFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISR 1076
L + F ++ DPD+L+G ++ SL L RA L I + R
Sbjct: 588 LLNCFCAMMKRSDPDVLIGHRLENISLDVLCHRALQLRIPTFSSFGR 634
Score = 41 (19.5 bits), Expect = 5.3e-07, Sum P(4) = 5.3e-07
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 296 IYPLVNFTTFQEEYERTGINEAVMAPDPGK 325
+Y LV FQE+ R + + + D G+
Sbjct: 38 VYDLVGEEQFQEQRRRELLRDDFVVDDDGQ 67
>UNIPROTKB|P09884 [details] [associations]
symbol:POLA1 "DNA polymerase alpha catalytic subunit"
species:9606 "Homo sapiens" [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP;IDA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0016363 "nuclear matrix" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IDA;TAS] [GO:0000166 "nucleotide binding"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0006272
"leading strand elongation" evidence=IDA] [GO:0006273 "lagging
strand elongation" evidence=IDA] [GO:0005635 "nuclear envelope"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IMP] [GO:0008283 "cell proliferation" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA;NAS] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=IMP;TAS] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IDA;TAS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003896 "DNA primase activity" evidence=IDA] [GO:0006270 "DNA
replication initiation" evidence=IDA;TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000083
"regulation of transcription involved in G1/S phase of mitotic cell
cycle" evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell
cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=IDA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005737 GO:GO:0005635 Reactome:REACT_115566 GO:GO:0019048
GO:GO:0005654 Reactome:REACT_21300 GO:GO:0005730 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0003682
GO:GO:0051539 GO:GO:0006270 GO:GO:0003690 GO:GO:0001882
DrugBank:DB01073 SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000216
GO:GO:0000084 GO:GO:0008408 GO:GO:0017076 GO:GO:0006303
GO:GO:0000722 GO:GO:0000083 Reactome:REACT_383 GO:GO:0003887
KO:K02320 DrugBank:DB00631 GO:GO:0032201 GO:GO:0006273
GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 EMBL:X06745 EMBL:AY275833 EMBL:M64481
IPI:IPI00220317 PIR:S00257 RefSeq:NP_058633.2 UniGene:Hs.567319
PDB:1K0P PDB:1K18 PDB:1N5G PDBsum:1K0P PDBsum:1K18 PDBsum:1N5G
ProteinModelPortal:P09884 SMR:P09884 IntAct:P09884
MINT:MINT-1517478 STRING:P09884 PhosphoSite:P09884 DMDM:60392197
PaxDb:P09884 PRIDE:P09884 Ensembl:ENST00000379059 GeneID:5422
KEGG:hsa:5422 UCSC:uc004dbl.3 CTD:5422 GeneCards:GC0XP024712
H-InvDB:HIX0028476 HGNC:HGNC:9173 HPA:CAB012274 HPA:HPA002947
MIM:312040 neXtProt:NX_P09884 PharmGKB:PA162399856
HOVERGEN:HBG080008 PhylomeDB:P09884 BindingDB:P09884
ChEMBL:CHEMBL1828 ChiTaRS:POLA1 EvolutionaryTrace:P09884
GenomeRNAi:5422 NextBio:20977 ArrayExpress:P09884 Bgee:P09884
CleanEx:HS_POLA1 Genevestigator:P09884 GO:GO:0019103 Uniprot:P09884
Length = 1462
Score = 130 (50.8 bits), Expect = 6.1e-07, Sum P(4) = 6.1e-07
Identities = 38/107 (35%), Positives = 55/107 (51%)
Query: 1348 PKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAA 1407
P + G+LPR + +++ R VKQ +K+ + ++ + ++ RQ ALKL AN YG
Sbjct: 904 PSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQ-YDIRQKALKLTANSMYG--CL 960
Query: 1408 GFS-GRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
GFS R LA + GR L V +K +VIYGDTD
Sbjct: 961 GFSYSRFYAKPLAALVTYKGREILMHTKEMV---QKMNLEVIYGDTD 1004
Score = 108 (43.1 bits), Expect = 0.00028, Sum P(5) = 0.00028
Identities = 30/109 (27%), Positives = 60/109 (55%)
Query: 1269 LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHV 1328
LV++P+ GFY +++LDF SLYPS++ +N+CF T + + S+ + + +
Sbjct: 843 LVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTV--QRVASEAQKVTEDGEQEQIPE 900
Query: 1329 LRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLA 1377
L D E+ I P + + + RK V + ++ L+ ++++ I++ A
Sbjct: 901 LPDPSLEMGILPREIRKLVER-RKQVKQLMKQQDLNPDLILQYDIRQKA 948
Score = 74 (31.1 bits), Expect = 6.1e-07, Sum P(4) = 6.1e-07
Identities = 24/118 (20%), Positives = 53/118 (44%)
Query: 1132 GRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEY 1191
GR++ +V + ++ Y + + + +L+ + IP + ++ + Y +E+
Sbjct: 687 GRMICDVEISAKELIRCKSYHLSELVQQILKTERVVIPMENIQNMYSES-SQLLY-LLEH 744
Query: 1192 VVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYL 1249
AK L+IM +L+++ ++ + G L G R E +LL + NY+
Sbjct: 745 TWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYI 802
Score = 63 (27.2 bits), Expect = 6.1e-07, Sum P(4) = 6.1e-07
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 1020 KVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAER 1062
KV V + E L F+ + DPDI++G +I G L L +R
Sbjct: 608 KVEVAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQR 650
Score = 43 (20.2 bits), Expect = 6.1e-07, Sum P(4) = 6.1e-07
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 3 DSQPDSNIFSVRIVSIDHYMAPPIPGYD 30
D + DS+ FSV+ V +D P + G D
Sbjct: 310 DQEGDSS-FSVQEVQVDSSHLPLVKGAD 336
Score = 38 (18.4 bits), Expect = 0.00028, Sum P(5) = 0.00028
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 1440 NEKWKAKVIYGDTDRYTVC 1458
N + KV GDT Y +C
Sbjct: 1162 NSQGGRKVKAGDTVSYVIC 1180
>UNIPROTKB|A6NMQ1 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001882
"nucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 HOGENOM:HOG000163524 OMA:GSGTDME
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 HGNC:HGNC:9173
HOVERGEN:HBG080008 ChiTaRS:POLA1 OrthoDB:EOG43XV2M EMBL:AC002504
EMBL:AC004655 EMBL:AC079375 EMBL:AC135280 IPI:IPI00647655
ProteinModelPortal:A6NMQ1 SMR:A6NMQ1 STRING:A6NMQ1 PRIDE:A6NMQ1
Ensembl:ENST00000379068 ArrayExpress:A6NMQ1 Bgee:A6NMQ1
Uniprot:A6NMQ1
Length = 1468
Score = 130 (50.8 bits), Expect = 6.2e-07, Sum P(4) = 6.2e-07
Identities = 38/107 (35%), Positives = 55/107 (51%)
Query: 1348 PKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAA 1407
P + G+LPR + +++ R VKQ +K+ + ++ + ++ RQ ALKL AN YG
Sbjct: 910 PSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQ-YDIRQKALKLTANSMYG--CL 966
Query: 1408 GFS-GRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
GFS R LA + GR L V +K +VIYGDTD
Sbjct: 967 GFSYSRFYAKPLAALVTYKGREILMHTKEMV---QKMNLEVIYGDTD 1010
Score = 108 (43.1 bits), Expect = 0.00028, Sum P(5) = 0.00028
Identities = 30/109 (27%), Positives = 60/109 (55%)
Query: 1269 LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHV 1328
LV++P+ GFY +++LDF SLYPS++ +N+CF T + + S+ + + +
Sbjct: 849 LVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTV--QRVASEAQKVTEDGEQEQIPE 906
Query: 1329 LRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLA 1377
L D E+ I P + + + RK V + ++ L+ ++++ I++ A
Sbjct: 907 LPDPSLEMGILPREIRKLVER-RKQVKQLMKQQDLNPDLILQYDIRQKA 954
Score = 74 (31.1 bits), Expect = 6.2e-07, Sum P(4) = 6.2e-07
Identities = 24/118 (20%), Positives = 53/118 (44%)
Query: 1132 GRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEY 1191
GR++ +V + ++ Y + + + +L+ + IP + ++ + Y +E+
Sbjct: 693 GRMICDVEISAKELIRCKSYHLSELVQQILKTERVVIPMENIQNMYSES-SQLLY-LLEH 750
Query: 1192 VVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYL 1249
AK L+IM +L+++ ++ + G L G R E +LL + NY+
Sbjct: 751 TWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYI 808
Score = 63 (27.2 bits), Expect = 6.2e-07, Sum P(4) = 6.2e-07
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 1020 KVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAER 1062
KV V + E L F+ + DPDI++G +I G L L +R
Sbjct: 614 KVEVAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQR 656
Score = 43 (20.2 bits), Expect = 6.2e-07, Sum P(4) = 6.2e-07
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 3 DSQPDSNIFSVRIVSIDHYMAPPIPGYD 30
D + DS+ FSV+ V +D P + G D
Sbjct: 316 DQEGDSS-FSVQEVQVDSSHLPLVKGAD 342
Score = 38 (18.4 bits), Expect = 0.00028, Sum P(5) = 0.00028
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 1440 NEKWKAKVIYGDTDRYTVC 1458
N + KV GDT Y +C
Sbjct: 1168 NSQGGRKVKAGDTVSYVIC 1186
>UNIPROTKB|A8J9T2 [details] [associations]
symbol:POLA1 "DNA polymerase" species:3055 "Chlamydomonas
reinhardtii" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IBA] [GO:0008408
"3'-5' exonuclease activity" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 Pfam:PF00136 Pfam:PF03104 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 EMBL:DS496147
RefSeq:XP_001698708.1 ProteinModelPortal:A8J9T2
EnsemblPlants:EDO99390 GeneID:5724235 KEGG:cre:CHLREDRAFT_177262
BioCyc:CHLAMY:CHLREDRAFT_177262-MONOMER Uniprot:A8J9T2
Length = 1114
Score = 159 (61.0 bits), Expect = 8.8e-07, Sum P(4) = 8.8e-07
Identities = 56/205 (27%), Positives = 96/205 (46%)
Query: 1130 VGGRIVLNVWRLMRGEVKLNMYTVEAVAETVL--RRKIPSIPFRV-----LTKWFASGPG 1182
V GR++ + + R VK +T+ +A+++L +R P L F S G
Sbjct: 455 VAGRLMCDTYLSARELVKSVDFTLGTLAQSLLGQQRSDPLAGSNAGNNSGLGACFGSAEG 514
Query: 1183 RARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRL 1242
R + + A L L IM L ++ T +L+ + G + L+ R+E +LL
Sbjct: 515 VLRL--LRHGESDAWLALGIMFHLSVLPLTKQLSALSGQLWSRTLAGQRAGRIEMLLLHE 572
Query: 1243 AHTQNYLAISPGNHQVASQPAME----CLPLVMEPESGFYADPVVVLDFQSLYPSMMIAY 1298
H++ ++ +++ + P+ LV+EP+ G Y V++LDF SLYPS++ Y
Sbjct: 573 FHSRKFIVPDKQSYKSKAAPSGNGPKYAGGLVLEPKKGLYDKIVIILDFNSLYPSIIQEY 632
Query: 1299 NLCFCTCLGKILPSKENTLGVSSFR 1323
N+CF T + S LG + R
Sbjct: 633 NICFTTAIKLTANSMYGCLGFGASR 657
Score = 57 (25.1 bits), Expect = 8.8e-07, Sum P(4) = 8.8e-07
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 1393 ALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAI 1434
A+KL AN YG G S R LA+ I GRS L +
Sbjct: 639 AIKLTANSMYGCLGFGAS-RFYAQPLAELITAQGRSILSSTV 679
Score = 49 (22.3 bits), Expect = 8.8e-07, Sum P(4) = 8.8e-07
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 1027 EIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISR 1076
E L + + L S D D+L+G ++ L L R H + L + I R
Sbjct: 378 ERSLLTCLLARLQSLDADVLVGHNVAAFDLTTLLSRMQHHKVPLWSRIGR 427
Score = 37 (18.1 bits), Expect = 8.8e-07, Sum P(4) = 8.8e-07
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 680 KEATAVTGGSVRDLMRRKRSYRESSECEPPRVKRVNVT 717
K A+ G + L RR + C P RV+ N T
Sbjct: 251 KTYCAIFGANQSTLERRIKGPGWMGICSPTRVEYGNQT 288
>UNIPROTKB|Q9NAH1 [details] [associations]
symbol:Y47D3A.29 "DNA polymerase" species:6239
"Caenorhabditis elegans" [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0008340 GO:GO:0009792 GO:GO:0035046 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 EMBL:AL117202
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891 HSSP:Q56366
GeneID:176544 KEGG:cel:CELE_Y47D3A.29 CTD:176544
RefSeq:NP_001255109.1 ProteinModelPortal:Q9NAH1 SMR:Q9NAH1
IntAct:Q9NAH1 MINT:MINT-6669806 STRING:Q9NAH1
EnsemblMetazoa:Y47D3A.29a UCSC:Y47D3A.29 WormBase:Y47D3A.29a
InParanoid:Q9NAH1 NextBio:893018 ArrayExpress:Q9NAH1 Uniprot:Q9NAH1
Length = 1428
Score = 111 (44.1 bits), Expect = 1.1e-06, Sum P(5) = 1.1e-06
Identities = 35/102 (34%), Positives = 50/102 (49%)
Query: 1352 KGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSG 1411
+GVLPR + +++ R VK +K + + + + RQ+ALKL AN YG +S
Sbjct: 876 EGVLPREIRKLVECRRDVKSLMK--SERNEAKKKQMDIRQMALKLTANSMYGCLGFQYS- 932
Query: 1412 RMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
R LA + GR L + V EK V+YGDTD
Sbjct: 933 RFYAKPLAALVTAKGREILMHSKDLV---EKMGYSVVYGDTD 971
Score = 107 (42.7 bits), Expect = 1.1e-06, Sum P(5) = 1.1e-06
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 1269 LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCT 1304
LV+EP+ G Y +++LDF SLYPS++ YN+C+ T
Sbjct: 821 LVLEPKKGLYETLILLLDFNSLYPSIIQEYNICYTT 856
Score = 52 (23.4 bits), Expect = 1.1e-06, Sum P(5) = 1.1e-06
Identities = 22/93 (23%), Positives = 46/93 (49%)
Query: 1025 SKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESKIA 1084
+ E L + F+ ++ +PD+++G D+ ++ L R L + + ISR L+ I
Sbjct: 599 ANEKALLTLFLAMINEDEPDMIVGHDLSA-TIALLVSRLEKLKLPNWSRISR--LKRSIN 655
Query: 1085 AGDSEISERGITDNMLAEPVVAESLLAKDAIIE 1117
G S+ G + + A ++ +S LA +++
Sbjct: 656 IGKIGHSKSGQWE-LTAGRMMLDSKLAAMELVK 687
Score = 43 (20.2 bits), Expect = 1.1e-06, Sum P(5) = 1.1e-06
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 610 KCNVKKKLWGSLPFSVSEQFNKD 632
KC V K GSLP+ + ++ +
Sbjct: 567 KCLVTKPPGGSLPYDIQKRLETE 589
Score = 42 (19.8 bits), Expect = 1.3e-06, Sum P(5) = 1.3e-06
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 696 RKRSYRESSECEPPRVK 712
R Y ESS+ PP +K
Sbjct: 507 RNIKYLESSDAPPPTIK 523
Score = 38 (18.4 bits), Expect = 1.1e-06, Sum P(5) = 1.1e-06
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 280 WEVCSHPIYKLFNIQYIYPLV-NFTTFQE 307
WE CS + + Y P N +T +E
Sbjct: 357 WETCSIVVKNICRKVYFMPRTKNLSTGEE 385
>WB|WBGene00012936 [details] [associations]
symbol:Y47D3A.29a species:6239 "Caenorhabditis elegans"
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0001882 "nucleoside binding" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0035046 "pronuclear migration" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0005634 "nucleus" evidence=ISS] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0008340 GO:GO:0009792
GO:GO:0035046 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303
GO:GO:0003887 EMBL:AL117202 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 OMA:GSGTDME InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
RefSeq:NP_001255108.1 ProteinModelPortal:C7IVS4 SMR:C7IVS4
STRING:C7IVS4 PaxDb:C7IVS4 EnsemblMetazoa:Y47D3A.29b GeneID:176544
KEGG:cel:CELE_Y47D3A.29 CTD:176544 WormBase:Y47D3A.29b
ArrayExpress:C7IVS4 Uniprot:C7IVS4
Length = 1456
Score = 111 (44.1 bits), Expect = 1.2e-06, Sum P(5) = 1.2e-06
Identities = 35/102 (34%), Positives = 50/102 (49%)
Query: 1352 KGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSG 1411
+GVLPR + +++ R VK +K + + + + RQ+ALKL AN YG +S
Sbjct: 876 EGVLPREIRKLVECRRDVKSLMK--SERNEAKKKQMDIRQMALKLTANSMYGCLGFQYS- 932
Query: 1412 RMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
R LA + GR L + V EK V+YGDTD
Sbjct: 933 RFYAKPLAALVTAKGREILMHSKDLV---EKMGYSVVYGDTD 971
Score = 107 (42.7 bits), Expect = 1.2e-06, Sum P(5) = 1.2e-06
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 1269 LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCT 1304
LV+EP+ G Y +++LDF SLYPS++ YN+C+ T
Sbjct: 821 LVLEPKKGLYETLILLLDFNSLYPSIIQEYNICYTT 856
Score = 52 (23.4 bits), Expect = 1.2e-06, Sum P(5) = 1.2e-06
Identities = 22/93 (23%), Positives = 46/93 (49%)
Query: 1025 SKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESKIA 1084
+ E L + F+ ++ +PD+++G D+ ++ L R L + + ISR L+ I
Sbjct: 599 ANEKALLTLFLAMINEDEPDMIVGHDLSA-TIALLVSRLEKLKLPNWSRISR--LKRSIN 655
Query: 1085 AGDSEISERGITDNMLAEPVVAESLLAKDAIIE 1117
G S+ G + + A ++ +S LA +++
Sbjct: 656 IGKIGHSKSGQWE-LTAGRMMLDSKLAAMELVK 687
Score = 43 (20.2 bits), Expect = 1.2e-06, Sum P(5) = 1.2e-06
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 610 KCNVKKKLWGSLPFSVSEQFNKD 632
KC V K GSLP+ + ++ +
Sbjct: 567 KCLVTKPPGGSLPYDIQKRLETE 589
Score = 42 (19.8 bits), Expect = 1.5e-06, Sum P(5) = 1.5e-06
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 696 RKRSYRESSECEPPRVK 712
R Y ESS+ PP +K
Sbjct: 507 RNIKYLESSDAPPPTIK 523
Score = 38 (18.4 bits), Expect = 1.2e-06, Sum P(5) = 1.2e-06
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 280 WEVCSHPIYKLFNIQYIYPLV-NFTTFQE 307
WE CS + + Y P N +T +E
Sbjct: 357 WETCSIVVKNICRKVYFMPRTKNLSTGEE 385
>UNIPROTKB|C7IVS4 [details] [associations]
symbol:Y47D3A.29 "DNA polymerase" species:6239
"Caenorhabditis elegans" [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0008340 GO:GO:0009792 GO:GO:0035046 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 EMBL:AL117202
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 HOGENOM:HOG000163524 OMA:GSGTDME InterPro:IPR024647
Pfam:PF12254 TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
RefSeq:NP_001255108.1 ProteinModelPortal:C7IVS4 SMR:C7IVS4
STRING:C7IVS4 PaxDb:C7IVS4 EnsemblMetazoa:Y47D3A.29b GeneID:176544
KEGG:cel:CELE_Y47D3A.29 CTD:176544 WormBase:Y47D3A.29b
ArrayExpress:C7IVS4 Uniprot:C7IVS4
Length = 1456
Score = 111 (44.1 bits), Expect = 1.2e-06, Sum P(5) = 1.2e-06
Identities = 35/102 (34%), Positives = 50/102 (49%)
Query: 1352 KGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFSG 1411
+GVLPR + +++ R VK +K + + + + RQ+ALKL AN YG +S
Sbjct: 876 EGVLPREIRKLVECRRDVKSLMK--SERNEAKKKQMDIRQMALKLTANSMYGCLGFQYS- 932
Query: 1412 RMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
R LA + GR L + V EK V+YGDTD
Sbjct: 933 RFYAKPLAALVTAKGREILMHSKDLV---EKMGYSVVYGDTD 971
Score = 107 (42.7 bits), Expect = 1.2e-06, Sum P(5) = 1.2e-06
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 1269 LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCT 1304
LV+EP+ G Y +++LDF SLYPS++ YN+C+ T
Sbjct: 821 LVLEPKKGLYETLILLLDFNSLYPSIIQEYNICYTT 856
Score = 52 (23.4 bits), Expect = 1.2e-06, Sum P(5) = 1.2e-06
Identities = 22/93 (23%), Positives = 46/93 (49%)
Query: 1025 SKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPLESKIA 1084
+ E L + F+ ++ +PD+++G D+ ++ L R L + + ISR L+ I
Sbjct: 599 ANEKALLTLFLAMINEDEPDMIVGHDLSA-TIALLVSRLEKLKLPNWSRISR--LKRSIN 655
Query: 1085 AGDSEISERGITDNMLAEPVVAESLLAKDAIIE 1117
G S+ G + + A ++ +S LA +++
Sbjct: 656 IGKIGHSKSGQWE-LTAGRMMLDSKLAAMELVK 687
Score = 43 (20.2 bits), Expect = 1.2e-06, Sum P(5) = 1.2e-06
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 610 KCNVKKKLWGSLPFSVSEQFNKD 632
KC V K GSLP+ + ++ +
Sbjct: 567 KCLVTKPPGGSLPYDIQKRLETE 589
Score = 42 (19.8 bits), Expect = 1.5e-06, Sum P(5) = 1.5e-06
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 696 RKRSYRESSECEPPRVK 712
R Y ESS+ PP +K
Sbjct: 507 RNIKYLESSDAPPPTIK 523
Score = 38 (18.4 bits), Expect = 1.2e-06, Sum P(5) = 1.2e-06
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 280 WEVCSHPIYKLFNIQYIYPLV-NFTTFQE 307
WE CS + + Y P N +T +E
Sbjct: 357 WETCSIVVKNICRKVYFMPRTKNLSTGEE 385
>UNIPROTKB|E2QVU2 [details] [associations]
symbol:POLA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0001882 "nucleoside
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 Ensembl:ENSCAFT00000021463 Uniprot:E2QVU2
Length = 1357
Score = 127 (49.8 bits), Expect = 1.4e-06, Sum P(5) = 1.4e-06
Identities = 38/107 (35%), Positives = 55/107 (51%)
Query: 1348 PKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAA 1407
P + G+LPR + +++ R VKQ +K+ + ++ + ++ RQ ALKL AN YG
Sbjct: 911 PGLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQ-YDIRQKALKLTANSMYG--CL 967
Query: 1408 GFS-GRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
GFS R LA + GR L V +K +VIYGDTD
Sbjct: 968 GFSYSRFYAKPLAALVTYKGREILMHTKEMV---QKMNLEVIYGDTD 1011
Score = 100 (40.3 bits), Expect = 0.00060, Sum P(5) = 0.00059
Identities = 30/110 (27%), Positives = 61/110 (55%)
Query: 1269 LVMEPES-GFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLH 1327
LV++P++ GFY +++LDF SLYPS++ +N+CF T + + S+ + + +
Sbjct: 849 LVLDPKAAGFYDKFILLLDFNSLYPSIIQEFNICFTTV--QRVASETQKVTEDGEQEQIP 906
Query: 1328 VLRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLA 1377
L D E+ I P + + + RK V + ++ L+ ++++ I++ A
Sbjct: 907 ELPDPGLEMGILPREIRKLVER-RKQVKQLMKQQDLNPDLVLQYDIRQKA 955
Score = 72 (30.4 bits), Expect = 1.4e-06, Sum P(5) = 1.4e-06
Identities = 24/118 (20%), Positives = 52/118 (44%)
Query: 1132 GRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEY 1191
GR++ +V + ++ Y + + + +LR + IP + ++ Y +E+
Sbjct: 693 GRMICDVEISAKELIRCKSYHLSELVQQILRTERVVIPMENVRNMYSES-SHLLY-LLEH 750
Query: 1192 VVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYL 1249
A+ L+IM +L+++ ++ + G L G R E +LL + NY+
Sbjct: 751 TWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYI 808
Score = 63 (27.2 bits), Expect = 1.4e-06, Sum P(5) = 1.4e-06
Identities = 26/95 (27%), Positives = 43/95 (45%)
Query: 1020 KVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPL 1079
KV + + E L F+ + DPDI++G +I G L L +R + + I R
Sbjct: 614 KVEIAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKVPHWSKIGRLKR 673
Query: 1080 ES--KIAAGDSEISERGIT-DNMLAE-PVVAESLL 1110
+ K+ G S ER T M+ + + A+ L+
Sbjct: 674 SNMPKLG-GRSGFGERNATCGRMICDVEISAKELI 707
Score = 49 (22.3 bits), Expect = 1.4e-06, Sum P(5) = 1.4e-06
Identities = 18/91 (19%), Positives = 39/91 (42%)
Query: 480 EDLNSDDELLHETI-LSPLLPETTIDKVLEKANTDYERESQKECQDILDSIEDEVNVDGL 538
ED + D+ + E + + P+ +T + YE + K L S +V+ +
Sbjct: 256 EDGDFDEPMEAEEVDVEPVAVKTWHQESEPAEGVKYEADPGKGTTSYLGSFLPDVSCWDI 315
Query: 539 EERNSSTVDPSNHPETSSHKKIPQIDGSSDD 569
++ + S+ SSH +P + G+ ++
Sbjct: 316 DQEDDSSFSAQEVQVDSSH--LPLVKGTDEE 344
Score = 40 (19.1 bits), Expect = 9.7e-06, Sum P(5) = 9.7e-06
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 640 ISSLCVTEVKDHGATGSLVGNELGKSFDALEREDADAHDIKEAT 683
+ +LC+ + +D GA + E G + +E E+ D + T
Sbjct: 239 VPALCIDDKEDSGA----MDFEDGDFDEPMEAEEVDVEPVAVKT 278
Score = 37 (18.1 bits), Expect = 1.4e-06, Sum P(5) = 1.4e-06
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 294 QYIYPLVNFTTFQEEYERTGINEAVMA 320
+Y Y + +FT+ EE + ++ V A
Sbjct: 52 KYKYEVEDFTSVYEEVDEEQYSKLVQA 78
>CGD|CAL0002431 [details] [associations]
symbol:POL1 species:5476 "Candida albicans" [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003688 "DNA replication origin
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006279 "premeiotic DNA replication"
evidence=IEA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IEA] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0000734 "gene conversion at mating-type locus,
DNA repair synthesis" evidence=IEA] [GO:0006278 "RNA-dependent DNA
replication" evidence=IEA] [GO:0000723 "telomere maintenance"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
CGD:CAL0002431 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 EMBL:AACQ01000003 EMBL:AACQ01000004
GO:GO:0003887 KO:K02320 eggNOG:COG0417 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 RefSeq:XP_722942.1 RefSeq:XP_723089.1
STRING:Q5ANM8 GeneID:3635144 GeneID:3635340 KEGG:cal:CaO19.13294
KEGG:cal:CaO19.5873 Uniprot:Q5ANM8
Length = 1470
Score = 113 (44.8 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 39/104 (37%), Positives = 51/104 (49%)
Query: 1353 GVLPRLLEEILSTRIMVKQAIK--KLAPSQQILHRIFNARQLALKLIANVTYGYTAAGF- 1409
GVLPRLL ++S R VK+ +K K P Q+ + I +Q ALKL AN YG G+
Sbjct: 905 GVLPRLLNTLVSRRREVKKLLKDPKNTPFQKAQYDI---KQQALKLTANSMYG--CLGYV 959
Query: 1410 SGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
+ R LA + GR L E +V+YGDTD
Sbjct: 960 NSRFYAKPLAMLVTNKGREILMDTRQLA---ESSSLRVVYGDTD 1000
Score = 107 (42.7 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 1269 LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCT 1304
LV EPE G + + V+V+DF SLYPS++ +N+CF T
Sbjct: 843 LVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTT 878
Score = 48 (22.0 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 1024 CSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAER 1062
C E L + + S DPD+ +G ++ SL L R
Sbjct: 602 CPSEKVLLNALAAKIKSLDPDVFIGHRLENISLDVLVHR 640
Score = 38 (18.4 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 13/66 (19%), Positives = 29/66 (43%)
Query: 771 EDASVSVGDWKADNCKESKFDATSVEPRELQSDHPNNNDSNLNQGSLTGVPTLYLNDGSC 830
ED S K++ E++ + +++P ++ N ++S NQ + +D
Sbjct: 211 EDQPSSPFKLKSEVTPEAETEKENIDPEPTKNVFENPSESLKNQEKVNDNDDEDDSDDDI 270
Query: 831 LYMLRP 836
+Y +P
Sbjct: 271 VYSRKP 276
>UNIPROTKB|F6Y1C9 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0001882 "nucleoside
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 OMA:GSGTDME InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
Ensembl:ENSCAFT00000021463 EMBL:AAEX03026211 Uniprot:F6Y1C9
Length = 1467
Score = 127 (49.8 bits), Expect = 2.0e-06, Sum P(5) = 2.0e-06
Identities = 38/107 (35%), Positives = 55/107 (51%)
Query: 1348 PKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAA 1407
P + G+LPR + +++ R VKQ +K+ + ++ + ++ RQ ALKL AN YG
Sbjct: 910 PGLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQ-YDIRQKALKLTANSMYG--CL 966
Query: 1408 GFS-GRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
GFS R LA + GR L V +K +VIYGDTD
Sbjct: 967 GFSYSRFYAKPLAALVTYKGREILMHTKEMV---QKMNLEVIYGDTD 1010
Score = 109 (43.4 bits), Expect = 0.00012, Sum P(5) = 0.00012
Identities = 30/109 (27%), Positives = 61/109 (55%)
Query: 1269 LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHV 1328
LV++P++GFY +++LDF SLYPS++ +N+CF T + + S+ + + +
Sbjct: 849 LVLDPKAGFYDKFILLLDFNSLYPSIIQEFNICFTTV--QRVASETQKVTEDGEQEQIPE 906
Query: 1329 LRDLKDELLIPPNGVMYVPPKVRKGVLPRLLEEILSTRIMVKQAIKKLA 1377
L D E+ I P + + + RK V + ++ L+ ++++ I++ A
Sbjct: 907 LPDPGLEMGILPREIRKLVER-RKQVKQLMKQQDLNPDLVLQYDIRQKA 954
Score = 72 (30.4 bits), Expect = 2.0e-06, Sum P(5) = 2.0e-06
Identities = 24/118 (20%), Positives = 52/118 (44%)
Query: 1132 GRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEY 1191
GR++ +V + ++ Y + + + +LR + IP + ++ Y +E+
Sbjct: 693 GRMICDVEISAKELIRCKSYHLSELVQQILRTERVVIPMENVRNMYSES-SHLLY-LLEH 750
Query: 1192 VVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYL 1249
A+ L+IM +L+++ ++ + G L G R E +LL + NY+
Sbjct: 751 TWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYI 808
Score = 63 (27.2 bits), Expect = 2.0e-06, Sum P(5) = 2.0e-06
Identities = 26/95 (27%), Positives = 43/95 (45%)
Query: 1020 KVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPL 1079
KV + + E L F+ + DPDI++G +I G L L +R + + I R
Sbjct: 614 KVEIAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKVPHWSKIGRLKR 673
Query: 1080 ES--KIAAGDSEISERGIT-DNMLAE-PVVAESLL 1110
+ K+ G S ER T M+ + + A+ L+
Sbjct: 674 SNMPKLG-GRSGFGERNATCGRMICDVEISAKELI 707
Score = 49 (22.3 bits), Expect = 2.0e-06, Sum P(5) = 2.0e-06
Identities = 18/91 (19%), Positives = 39/91 (42%)
Query: 480 EDLNSDDELLHETI-LSPLLPETTIDKVLEKANTDYERESQKECQDILDSIEDEVNVDGL 538
ED + D+ + E + + P+ +T + YE + K L S +V+ +
Sbjct: 256 EDGDFDEPMEAEEVDVEPVAVKTWHQESEPAEGVKYEADPGKGTTSYLGSFLPDVSCWDI 315
Query: 539 EERNSSTVDPSNHPETSSHKKIPQIDGSSDD 569
++ + S+ SSH +P + G+ ++
Sbjct: 316 DQEDDSSFSAQEVQVDSSH--LPLVKGTDEE 344
Score = 40 (19.1 bits), Expect = 1.4e-05, Sum P(5) = 1.4e-05
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 640 ISSLCVTEVKDHGATGSLVGNELGKSFDALEREDADAHDIKEAT 683
+ +LC+ + +D GA + E G + +E E+ D + T
Sbjct: 239 VPALCIDDKEDSGA----MDFEDGDFDEPMEAEEVDVEPVAVKT 278
Score = 37 (18.1 bits), Expect = 2.0e-06, Sum P(5) = 2.0e-06
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 294 QYIYPLVNFTTFQEEYERTGINEAVMA 320
+Y Y + +FT+ EE + ++ V A
Sbjct: 52 KYKYEVEDFTSVYEEVDEEQYSKLVQA 78
>RGD|621816 [details] [associations]
symbol:Pola1 "polymerase (DNA directed), alpha 1, catalytic
subunit" species:10116 "Rattus norvegicus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=ISO;ISS] [GO:0000166 "nucleotide
binding" evidence=IEA;ISO;ISS] [GO:0000731 "DNA synthesis involved
in DNA repair" evidence=ISO;ISS] [GO:0000785 "chromatin"
evidence=ISO;ISS] [GO:0001882 "nucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;ISO;ISS] [GO:0003682
"chromatin binding" evidence=ISO;ISS] [GO:0003690 "double-stranded
DNA binding" evidence=IDA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;ISO;ISS;IDA;IMP] [GO:0003896 "DNA primase
activity" evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;ISS]
[GO:0005635 "nuclear envelope" evidence=ISO;ISS] [GO:0005654
"nucleoplasm" evidence=ISO;ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IC;ISO;ISS;IDA] [GO:0005730
"nucleolus" evidence=ISO;ISS] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA;ISO;ISS;IMP] [GO:0006269
"DNA replication, synthesis of RNA primer" evidence=ISO;ISS]
[GO:0006270 "DNA replication initiation" evidence=ISO;ISS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=ISO;ISS] [GO:0006272 "leading strand elongation"
evidence=ISO;ISS] [GO:0006273 "lagging strand elongation"
evidence=ISO;ISS] [GO:0006281 "DNA repair" evidence=ISO;ISS]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISO;ISS;IBA] [GO:0008283 "cell
proliferation" evidence=ISO;ISS] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] [GO:0016363 "nuclear matrix"
evidence=ISO;ISS] [GO:0017076 "purine nucleotide binding"
evidence=IMP] [GO:0019103 "pyrimidine nucleotide binding"
evidence=IMP] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=ISO]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:621816
GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0008283 GO:GO:0000785 GO:GO:0003682
GO:GO:0051539 GO:GO:0006270 GO:GO:0003690 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084 GO:GO:0008408
GO:GO:0017076 GO:GO:0006303 GO:GO:0003896 GO:GO:0003887 KO:K02320
GO:GO:0006273 GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 CTD:5422 HOVERGEN:HBG080008 GO:GO:0019103
OrthoDB:EOG43XV2M EMBL:AJ011605 IPI:IPI00764174 RefSeq:NP_445931.1
UniGene:Rn.187125 UniGene:Rn.92345 ProteinModelPortal:O89042
SMR:O89042 STRING:O89042 PhosphoSite:O89042 PRIDE:O89042
GeneID:85241 KEGG:rno:85241 InParanoid:O89042 NextBio:617296
ArrayExpress:O89042 Genevestigator:O89042
GermOnline:ENSRNOG00000013322 Uniprot:O89042
Length = 1451
Score = 154 (59.3 bits), Expect = 2.4e-06, Sum P(4) = 2.4e-06
Identities = 79/332 (23%), Positives = 141/332 (42%)
Query: 1132 GRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEY 1191
GR++ +V ++ + Y + + + +L+ + IP + + S P Y +E+
Sbjct: 694 GRMICDVEISVKELIHCKSYHLSELVQQILKTERIVIPTENIRNMY-SEPSHLLY-LLEH 751
Query: 1192 VVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAI 1251
+ A+ L+IM +L+++ ++ + G L G R E +LL + NY+
Sbjct: 752 IWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVP 811
Query: 1252 SPGNHQVASQ-PAMECLPLVMEP-------ESGFYADPVVVLDFQSLYPSMMIAYNLCFC 1303
+ Q P E + + + YA +V+ Y ++ L F
Sbjct: 812 DKQIFRKPQQKPGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILL--LDFN 869
Query: 1304 TCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVP-PKVRKGVLPRLLEEI 1362
+ I+ + N + R L+ +DE + +P P + G+LPR + ++
Sbjct: 870 SLYPSII-QEFNICFTTVQRVASETLKATEDE---EQEQIPELPDPNLDMGILPREIRKL 925
Query: 1363 LSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFS-GRMPCAELADS 1421
+ R VKQ +K+ + ++ + ++ RQ ALKL AN YG GFS R LA
Sbjct: 926 VERRKQVKQLMKQQDLNPDLVLQ-YDIRQKALKLTANSMYG--CLGFSYSRFYAKPLAAL 982
Query: 1422 IVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
+ GR L V +K +VIYGDTD
Sbjct: 983 VTYKGREILMHTKEMV---QKMNLEVIYGDTD 1011
Score = 64 (27.6 bits), Expect = 2.4e-06, Sum P(4) = 2.4e-06
Identities = 23/78 (29%), Positives = 33/78 (42%)
Query: 1020 KVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPL 1079
+V V + E L F+ + DPDIL+G +I G L L +R + + I R
Sbjct: 615 EVEVAATERTLLGFFLAKVHKLDPDILVGHNICGFELEVLLQRINECKVPFWSKIGRLRR 674
Query: 1080 ESKIAAGD-SEISERGIT 1096
+ G S ER T
Sbjct: 675 SNMPKLGSRSGFGERNAT 692
Score = 47 (21.6 bits), Expect = 2.4e-06, Sum P(4) = 2.4e-06
Identities = 56/300 (18%), Positives = 120/300 (40%)
Query: 294 QYIYPLVNFTTFQEEYERTGINEAVMA-PDPGKPRPQDVLRTLSLGLE-FENVL----ME 347
+Y Y + + T+ EE + ++ V A D D + + G E F++ L ++
Sbjct: 52 KYKYEVEDLTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGREIFDDDLEDDALD 111
Query: 348 MCGEGQETVSSFGNDFEVLKSVACATDEENLIKLGPANYDYKDPEYLTCLKEGKILSALA 407
CGEG + + D + +K + T N+ + A+ K + L + +L +
Sbjct: 112 TCGEGSDG-KAHRKDRKDVKKPS-VTKPNNIKAMFIASAGKKTTDKTVDLSKDDLLGDIL 169
Query: 408 PQGLVHQEKIS----LMPSKGKDT-CPELPFGGEIHS-----SEMVGAP-GQKEPLIFGI 456
+I+ L+P K + T PF +H+ S + +P +KEP + +
Sbjct: 170 QDLNTETPQIAPPPVLIPKKKRSTGASPNPFS--VHTATAVPSGKIASPVSRKEPPLTPV 227
Query: 457 DIPQATDTEALGLLKWLATSQAA-----EDLNSDDELLHETI--LSPLLPETTIDKVLEK 509
+ +A L + Q + ED + D+ + E + P+ + +
Sbjct: 228 PLKRAEFAGDLAQPECPEDEQESGVIEFEDGDFDEPMDTEEVDEEEPVTAKIWDQESEPV 287
Query: 510 ANTDYERESQKECQDILDSIEDEVNVDGLEERNSSTVDPSNHPETSSHKKIPQIDGSSDD 569
+E + + LDS +V+ +++++ ++ S+H +P + G+ D+
Sbjct: 288 EGVKHEADPETGTTSFLDSFLPDVSCWDIDQKDENSFLLQEVQVDSNH--LPLVKGADDE 345
Score = 40 (19.1 bits), Expect = 1.1e-05, Sum P(4) = 1.1e-05
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 5 QPDSNIFSVRIVSIDHYMAPPIPGYD 30
Q D N F ++ V +D P + G D
Sbjct: 318 QKDENSFLLQEVQVDSNHLPLVKGAD 343
Score = 38 (18.4 bits), Expect = 2.4e-06, Sum P(4) = 2.4e-06
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 1440 NEKWKAKVIYGDTDRYTVC 1458
N + KV GDT Y +C
Sbjct: 1169 NSQGGRKVKAGDTVSYVIC 1187
>UNIPROTKB|O89042 [details] [associations]
symbol:Pola1 "DNA polymerase alpha catalytic subunit"
species:10116 "Rattus norvegicus" [GO:0001882 "nucleoside binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
RGD:621816 GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0008283 GO:GO:0000785 GO:GO:0003682
GO:GO:0051539 GO:GO:0006270 GO:GO:0003690 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084 GO:GO:0008408
GO:GO:0017076 GO:GO:0006303 GO:GO:0003896 GO:GO:0003887 KO:K02320
GO:GO:0006273 GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 CTD:5422 HOVERGEN:HBG080008 GO:GO:0019103
OrthoDB:EOG43XV2M EMBL:AJ011605 IPI:IPI00764174 RefSeq:NP_445931.1
UniGene:Rn.187125 UniGene:Rn.92345 ProteinModelPortal:O89042
SMR:O89042 STRING:O89042 PhosphoSite:O89042 PRIDE:O89042
GeneID:85241 KEGG:rno:85241 InParanoid:O89042 NextBio:617296
ArrayExpress:O89042 Genevestigator:O89042
GermOnline:ENSRNOG00000013322 Uniprot:O89042
Length = 1451
Score = 154 (59.3 bits), Expect = 2.4e-06, Sum P(4) = 2.4e-06
Identities = 79/332 (23%), Positives = 141/332 (42%)
Query: 1132 GRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEY 1191
GR++ +V ++ + Y + + + +L+ + IP + + S P Y +E+
Sbjct: 694 GRMICDVEISVKELIHCKSYHLSELVQQILKTERIVIPTENIRNMY-SEPSHLLY-LLEH 751
Query: 1192 VVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAI 1251
+ A+ L+IM +L+++ ++ + G L G R E +LL + NY+
Sbjct: 752 IWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVP 811
Query: 1252 SPGNHQVASQ-PAMECLPLVMEP-------ESGFYADPVVVLDFQSLYPSMMIAYNLCFC 1303
+ Q P E + + + YA +V+ Y ++ L F
Sbjct: 812 DKQIFRKPQQKPGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILL--LDFN 869
Query: 1304 TCLGKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMYVP-PKVRKGVLPRLLEEI 1362
+ I+ + N + R L+ +DE + +P P + G+LPR + ++
Sbjct: 870 SLYPSII-QEFNICFTTVQRVASETLKATEDE---EQEQIPELPDPNLDMGILPREIRKL 925
Query: 1363 LSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAAGFS-GRMPCAELADS 1421
+ R VKQ +K+ + ++ + ++ RQ ALKL AN YG GFS R LA
Sbjct: 926 VERRKQVKQLMKQQDLNPDLVLQ-YDIRQKALKLTANSMYG--CLGFSYSRFYAKPLAAL 982
Query: 1422 IVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
+ GR L V +K +VIYGDTD
Sbjct: 983 VTYKGREILMHTKEMV---QKMNLEVIYGDTD 1011
Score = 64 (27.6 bits), Expect = 2.4e-06, Sum P(4) = 2.4e-06
Identities = 23/78 (29%), Positives = 33/78 (42%)
Query: 1020 KVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPL 1079
+V V + E L F+ + DPDIL+G +I G L L +R + + I R
Sbjct: 615 EVEVAATERTLLGFFLAKVHKLDPDILVGHNICGFELEVLLQRINECKVPFWSKIGRLRR 674
Query: 1080 ESKIAAGD-SEISERGIT 1096
+ G S ER T
Sbjct: 675 SNMPKLGSRSGFGERNAT 692
Score = 47 (21.6 bits), Expect = 2.4e-06, Sum P(4) = 2.4e-06
Identities = 56/300 (18%), Positives = 120/300 (40%)
Query: 294 QYIYPLVNFTTFQEEYERTGINEAVMA-PDPGKPRPQDVLRTLSLGLE-FENVL----ME 347
+Y Y + + T+ EE + ++ V A D D + + G E F++ L ++
Sbjct: 52 KYKYEVEDLTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGREIFDDDLEDDALD 111
Query: 348 MCGEGQETVSSFGNDFEVLKSVACATDEENLIKLGPANYDYKDPEYLTCLKEGKILSALA 407
CGEG + + D + +K + T N+ + A+ K + L + +L +
Sbjct: 112 TCGEGSDG-KAHRKDRKDVKKPS-VTKPNNIKAMFIASAGKKTTDKTVDLSKDDLLGDIL 169
Query: 408 PQGLVHQEKIS----LMPSKGKDT-CPELPFGGEIHS-----SEMVGAP-GQKEPLIFGI 456
+I+ L+P K + T PF +H+ S + +P +KEP + +
Sbjct: 170 QDLNTETPQIAPPPVLIPKKKRSTGASPNPFS--VHTATAVPSGKIASPVSRKEPPLTPV 227
Query: 457 DIPQATDTEALGLLKWLATSQAA-----EDLNSDDELLHETI--LSPLLPETTIDKVLEK 509
+ +A L + Q + ED + D+ + E + P+ + +
Sbjct: 228 PLKRAEFAGDLAQPECPEDEQESGVIEFEDGDFDEPMDTEEVDEEEPVTAKIWDQESEPV 287
Query: 510 ANTDYERESQKECQDILDSIEDEVNVDGLEERNSSTVDPSNHPETSSHKKIPQIDGSSDD 569
+E + + LDS +V+ +++++ ++ S+H +P + G+ D+
Sbjct: 288 EGVKHEADPETGTTSFLDSFLPDVSCWDIDQKDENSFLLQEVQVDSNH--LPLVKGADDE 345
Score = 40 (19.1 bits), Expect = 1.1e-05, Sum P(4) = 1.1e-05
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 5 QPDSNIFSVRIVSIDHYMAPPIPGYD 30
Q D N F ++ V +D P + G D
Sbjct: 318 QKDENSFLLQEVQVDSNHLPLVKGAD 343
Score = 38 (18.4 bits), Expect = 2.4e-06, Sum P(4) = 2.4e-06
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 1440 NEKWKAKVIYGDTDRYTVC 1458
N + KV GDT Y +C
Sbjct: 1169 NSQGGRKVKAGDTVSYVIC 1187
>POMBASE|SPAC3H5.06c [details] [associations]
symbol:pol1 "DNA polymerase alpha catalytic subunit"
species:4896 "Schizosaccharomyces pombe" [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0000734 "gene conversion at
mating-type locus, DNA repair synthesis" evidence=IMP] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IGI] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IGI] [GO:0006270
"DNA replication initiation" evidence=IMP] [GO:0033314 "mitotic DNA
replication checkpoint" evidence=IMP] [GO:0043596 "nuclear
replication fork" evidence=IGI] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
PomBase:SPAC3H5.06c EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0051539 GO:GO:0003688
GO:GO:0000790 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0000723 GO:GO:0033314 GO:GO:0003887 KO:K02320 GO:GO:0006269
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658 EMBL:X58299
EMBL:X69673 EMBL:AB027936 PIR:S15993 RefSeq:NP_594186.1
ProteinModelPortal:P28040 IntAct:P28040 STRING:P28040
EnsemblFungi:SPAC3H5.06c.1 GeneID:2543629 KEGG:spo:SPAC3H5.06c
HOGENOM:HOG000163524 OMA:GSGTDME OrthoDB:EOG4K0TWK NextBio:20804635
GO:GO:0000734 InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
Uniprot:P28040
Length = 1405
Score = 110 (43.8 bits), Expect = 3.0e-06, Sum P(5) = 3.0e-06
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 1269 LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCT 1304
LV EP+ G Y ++V+DF SLYPS++ YN+CF T
Sbjct: 829 LVFEPQKGLYETCILVMDFNSLYPSIIQEYNICFTT 864
Score = 104 (41.7 bits), Expect = 3.0e-06, Sum P(5) = 3.0e-06
Identities = 36/107 (33%), Positives = 53/107 (49%)
Query: 1352 KGVLPRLLEEILSTRIMVKQAIK--KLAPSQQILHRIFNARQLALKLIANVTYG---YTA 1406
+G+ PRL+ ++ R +K +K P+Q++ ++ +Q ALKL AN YG YT
Sbjct: 888 QGIFPRLIANLVERRRQIKGLLKDNSATPTQRLQ---WDIQQQALKLTANSMYGCLGYTK 944
Query: 1407 AGFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
+ F R P A L I GR L ++ +VIYGDTD
Sbjct: 945 SRFYAR-PLAVL---ITYKGREALMNTKELADQ---MGLQVIYGDTD 984
Score = 58 (25.5 bits), Expect = 3.0e-06, Sum P(5) = 3.0e-06
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 1021 VFVCSKEIHLFSHFIKILCSFDPDILMGWDIQ---GGSLGFLAERAAH 1065
+F E+ L ++F+ + ++DPD+ G D + L L ER H
Sbjct: 596 IFCERSEVSLLNNFLNKVRTYDPDVYFGHDFEMCYSVLLSRLKERKIH 643
Score = 38 (18.4 bits), Expect = 8.9e-06, Sum P(3) = 8.9e-06
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 359 FGNDFEVLKSVACATDEENLI 379
FG+DFE+ SV + +E I
Sbjct: 622 FGHDFEMCYSVLLSRLKERKI 642
Score = 37 (18.1 bits), Expect = 3.0e-06, Sum P(5) = 3.0e-06
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 993 DHAVEIYVLLYCKSESHQRSLVGIP 1017
D A + YV + K + RSL +P
Sbjct: 352 DKATKQYVSCFLKVDGIMRSLYFLP 376
Score = 37 (18.1 bits), Expect = 3.0e-06, Sum P(5) = 3.0e-06
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 450 EP-LIFGIDIPQATDTEALGLLKWLATSQAAEDLNSDDELLHETILSPLLP 499
EP L G D P E++ + ++ Q + + + + LSP+ P
Sbjct: 234 EPELPVGSDAPIIDVEESIAMKPLMSHDQVDDTASLSKATISQQPLSPMTP 284
Score = 37 (18.1 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 173 FPRKFNYSSKQ 183
+PR FN SS+Q
Sbjct: 656 WPRSFNRSSQQ 666
>UNIPROTKB|A6V6S5 [details] [associations]
symbol:polB "DNA polymerase" species:381754 "Pseudomonas
aeruginosa PA7" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 EMBL:CP000744 GenomeReviews:CP000744_GR
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 HOGENOM:HOG000221829 KO:K02336 ProtClustDB:PRK05762
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
RefSeq:YP_001348760.1 ProteinModelPortal:A6V6S5 SMR:A6V6S5
STRING:A6V6S5 GeneID:5354072 KEGG:pap:PSPA7_3400 PATRIC:19828452
OMA:SATWSFP BioCyc:PAER381754:GHMY-3442-MONOMER Uniprot:A6V6S5
Length = 788
Score = 104 (41.7 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 50/190 (26%), Positives = 86/190 (45%)
Query: 1118 DEWG-RTHAS-GLH----VGGRIVLNVWRLMRGEV-KLNMYTVEAVAETVLRR-KIPSIP 1169
DE G R H S H GR++++ +R +++E VA T+L K P
Sbjct: 254 DEMGWREHGSRNNHYFAAAAGRLIIDGIEALRSATWSFPSFSLENVARTLLGEGKAIDNP 313
Query: 1170 FR---VLTKWFASG-PGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFS 1225
++ + + FA P ARY + +L I + ++++ E A V G+ +
Sbjct: 314 YQRMDEIDRMFAEDKPALARYNLKD-----CELVTRIFARTELLDFLLERATVTGLP--A 366
Query: 1226 VLSRGSQYRVESMLLRLAHTQNYLAISPGNHQVASQPAMECLPLVMEPESGFYADPVVVL 1285
S GS + + L H ++A + G + + P VM+ G Y + V+VL
Sbjct: 367 DRSGGSVAAFTHLYMPLMHRAGFVAPNLGEKRPEASPG----GFVMDSRPGLY-ESVLVL 421
Query: 1286 DFQSLYPSMM 1295
D++SLYPS++
Sbjct: 422 DYKSLYPSII 431
Score = 69 (29.3 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 25/62 (40%), Positives = 30/62 (48%)
Query: 1393 ALKLIANVTYGYTAAGFSG-RMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGD 1451
ALK+I N YG G SG R LA SI G + + + E E + VIYGD
Sbjct: 494 ALKIIMNAFYG--VLGSSGCRFFDPRLASSITLRGHRIMRRTRELI-EAEGYT--VIYGD 548
Query: 1452 TD 1453
TD
Sbjct: 549 TD 550
Score = 67 (28.6 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 29/124 (23%), Positives = 51/124 (41%)
Query: 960 LSIEVQAESRGDL-----RPDPRY-DSINVVALAFENDSDHAVEIYVLLYCKSESHQRSL 1013
+S+E E+ G L +P P Y + +V+L E ++ ++Y + Q +
Sbjct: 126 VSLEASVEADGSLLARRLKPAPDYRPRLRLVSLDIETNARG--DLYSIALEGCGQRQVYM 183
Query: 1014 VG-------IPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHL 1066
+G D ++ C L + L DPD ++GW++ L L E A L
Sbjct: 184 LGPANGDASAVDFRLDYCDSRAGLLERLNQWLAEHDPDAIIGWNLVQFDLRVLHEHAQRL 243
Query: 1067 GIGL 1070
+ L
Sbjct: 244 KVPL 247
>UNIPROTKB|Q59J90 [details] [associations]
symbol:Q59J90 "DNA polymerase" species:8296 "Ambystoma
mexicanum" [GO:0000084 "S phase of mitotic cell cycle"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005635 "nuclear envelope" evidence=ISS] [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] [GO:0006272 "leading strand elongation"
evidence=ISS] [GO:0006273 "lagging strand elongation" evidence=ISS]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0016363 "nuclear matrix" evidence=ISS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0000785 "chromatin"
evidence=ISS] [GO:0003896 "DNA primase activity" evidence=ISS]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005635
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 GO:GO:0003677
GO:GO:0008283 GO:GO:0003682 GO:GO:0006270 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084 GO:GO:0006303
GO:GO:0003887 GO:GO:0006273 GO:GO:0006269 GO:GO:0006272
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
TIGRFAMs:TIGR00592 HOVERGEN:HBG080008 EMBL:AB178525 Uniprot:Q59J90
Length = 1409
Score = 130 (50.8 bits), Expect = 2.9e-05, Sum P(4) = 2.9e-05
Identities = 38/106 (35%), Positives = 53/106 (50%)
Query: 1348 PKVRKGVLPRLLEEILSTRIMVKQAIKKLAPSQQILHRIFNARQLALKLIANVTYGYTAA 1407
P + G+LPR + +++ R VKQ +K+ + L+ ++ RQ ALKL AN YG
Sbjct: 851 PDLELGILPREIRKLVERRRQVKQLMKQ-SDLNPDLYMQYDIRQKALKLTANSMYGCLGF 909
Query: 1408 GFSGRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
FS R LA + GR L V +K +VIYGDTD
Sbjct: 910 SFS-RFYAKPLAALVTHKGREILLHTRDMV---QKMNLEVIYGDTD 951
Score = 69 (29.3 bits), Expect = 2.9e-05, Sum P(4) = 2.9e-05
Identities = 23/118 (19%), Positives = 53/118 (44%)
Query: 1132 GRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEY 1191
GR++ +V + ++ Y + + +L+ + IP + +++ P + Y +E+
Sbjct: 634 GRMICDVQISAKELIRCKSYHLSELVHQILKTERLIIPGENIRNYYSDSP-QLLYM-LEH 691
Query: 1192 VVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYL 1249
K L+IM +L+++ ++ + G L G R E +LL + N++
Sbjct: 692 TWLDTKFILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEYLLLHAFYENNFI 749
Score = 54 (24.1 bits), Expect = 2.9e-05, Sum P(4) = 2.9e-05
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 1018 DCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAER 1062
+ + V E L + + DPD+++G DI G L L +R
Sbjct: 553 NANIEVALTERTLLGFLLAKIHKIDPDVIVGHDIYGFDLEVLLQR 597
Score = 39 (18.8 bits), Expect = 2.9e-05, Sum P(4) = 2.9e-05
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 863 KASVEHSSL-KGSDIRPVLEEM 883
K EH S + +++PV EEM
Sbjct: 220 KKEEEHKSEERAKELKPVKEEM 241
Score = 37 (18.1 bits), Expect = 4.5e-05, Sum P(4) = 4.5e-05
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 805 PNNNDSNLNQGSLTGVPTLYLN 826
P +L+ G TG P +N
Sbjct: 338 PRETQVDLSSGKETGTPVSMMN 359
>UNIPROTKB|E1BJF4 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9913 "Bos taurus"
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IEA] [GO:0006273
"lagging strand elongation" evidence=IEA] [GO:0006272 "leading
strand elongation" evidence=IEA] [GO:0006270 "DNA replication
initiation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0003896 "DNA primase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000785 "chromatin" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000084 "S phase of mitotic
cell cycle" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0001882 "nucleoside binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 GO:GO:0003677 GO:GO:0008283 GO:GO:0000785
GO:GO:0003682 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0016363 GO:GO:0000084 GO:GO:0006303 GO:GO:0003896
GO:GO:0003887 GO:GO:0006273 GO:GO:0006269 GO:GO:0006272
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658 OMA:GSGTDME
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:DAAA02074352 IPI:IPI00717665
Ensembl:ENSBTAT00000010742 Uniprot:E1BJF4
Length = 1351
Score = 112 (44.5 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 39/111 (35%), Positives = 54/111 (48%)
Query: 1348 PKVRKGVLPRLLEEILSTRIMVKQAIKK-LAPSQQILHRI---FNARQLALKLIANVTYG 1403
P + G+LPR + +++ R ++ I+K L P +L ++ RQ ALKL AN YG
Sbjct: 910 PSLEMGILPREIRKLVERR---RETIQKHLMPQICLLSLCGLQYDIRQKALKLTANSMYG 966
Query: 1404 YTAAGFS-GRMPCAELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
GFS R LA + GR L V +K +VIYGDTD
Sbjct: 967 --CLGFSYSRFYAKPLAALVTYKGREILMHTKEMV---QKMNLEVIYGDTD 1012
Score = 112 (44.5 bits), Expect = 0.00028, Sum P(5) = 0.00028
Identities = 39/140 (27%), Positives = 71/140 (50%)
Query: 1269 LVMEPESGFYADPVVVLDFQSLYPSMMIAYNLCFCTCLGKILPSKENTLGVSSFRPDLHV 1328
LV++P+ GFY +++LDF SLYPS++ +N+CF T + + S+ + + +
Sbjct: 849 LVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTV--QRVASEAQKVVEDGEQEQIPE 906
Query: 1329 LRDLKDELLIPPNGVMYVPPK----VRKGVLPRL-LEEILSTRIMVKQ-AIKKLAPSQQI 1382
L D E+ I P + + + ++K ++P++ L + + ++Q A+K A S
Sbjct: 907 LPDPSLEMGILPREIRKLVERRRETIQKHLMPQICLLSLCGLQYDIRQKALKLTANSMYG 966
Query: 1383 LHRIFNARQLALKLIANVTY 1402
+R A L A VTY
Sbjct: 967 CLGFSYSRFYAKPLAALVTY 986
Score = 73 (30.8 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 24/118 (20%), Positives = 52/118 (44%)
Query: 1132 GRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEY 1191
GR++ +V + ++ Y + + + +L+ + IP + + S Y +E+
Sbjct: 693 GRMICDVEISAKELIRCKSYHLSELVQQILKTERIVIPIETIRNMY-SDSSHLLY-LLEH 750
Query: 1192 VVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYL 1249
A+ L+IM +L+++ ++ + G L G R E +LL + NY+
Sbjct: 751 TWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYI 808
Score = 64 (27.6 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 26/95 (27%), Positives = 43/95 (45%)
Query: 1020 KVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAAHLGIGLLNDISRTPL 1079
KV V + E L F+ + DPDI++G +I G L L +R + + I R
Sbjct: 614 KVEVAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKVPFWSKIGRLKR 673
Query: 1080 ES--KIAAGDSEISERGIT-DNMLAE-PVVAESLL 1110
+ K+ G S E+ T M+ + + A+ L+
Sbjct: 674 SNMPKLG-GRSGFGEKNATCGRMICDVEISAKELI 707
Score = 38 (18.4 bits), Expect = 0.00028, Sum P(5) = 0.00028
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 1440 NEKWKAKVIYGDTDRYTVC 1458
N + KV GDT Y +C
Sbjct: 1170 NSQGGRKVKAGDTVSYVIC 1188
Score = 37 (18.1 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 294 QYIYPLVNFTTFQEEYERTGINEAVMA 320
+Y Y + +FT+ EE + ++ V A
Sbjct: 52 KYKYEVEDFTSVYEEVDEEQYSKLVQA 78
>UNIPROTKB|Q9KSP4 [details] [associations]
symbol:VC_1212 "DNA polymerase" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR SUPFAM:SSF53098
GO:GO:0003887 KO:K02336 OMA:VLDGIDW ProtClustDB:PRK05762
Gene3D:3.90.1600.10 InterPro:IPR023211 HSSP:P21189 PIR:E82227
RefSeq:NP_230857.1 ProteinModelPortal:Q9KSP4 DNASU:2614645
GeneID:2614645 KEGG:vch:VC1212 PATRIC:20081512 Uniprot:Q9KSP4
Length = 787
Score = 98 (39.6 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 48/185 (25%), Positives = 91/185 (49%)
Query: 1122 RTHASGLHVGGRIVLN-VWRLMRGEVKLNMYTVEAVAETVLR--RKIPSIPFRV--LTKW 1176
+T + + GR+VL+ + L +++E+V++ +L + I ++ R+ + +
Sbjct: 261 QTQQGFISIPGRVVLDGIDTLKTATYHFRSWSLESVSQELLGEGKAIHNVHDRMDEINQM 320
Query: 1177 FASG-PGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRV 1235
F P ARY + V+ +N +I +++ + +R+ G++ + GS
Sbjct: 321 FRHDKPSLARYNLQDCVL----VN-KIFAATHLLDFAIQRSRLTGVELDRI--GGSVAAF 373
Query: 1236 ESMLLRLAHTQNYLA--ISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPS 1293
++ L H Y+A + P N VAS P VM+ G Y D V+VLDF+SLYPS
Sbjct: 374 TNLYLPQLHRAGYVAPNLQPENW-VAS-PG----GYVMDSIPGLY-DSVLVLDFKSLYPS 426
Query: 1294 MMIAY 1298
++ ++
Sbjct: 427 IIRSF 431
Score = 71 (30.1 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 31/97 (31%), Positives = 43/97 (44%)
Query: 1365 TRIMVKQAIKKL-APSQQILHRIFNARQLALKLIANVTYGYTAAGFSG-RMPCAELADSI 1422
T+ + + I+KL A + A A+K+I N YG G SG R A LA SI
Sbjct: 465 TKHFLPEMIEKLWAARDEAKRNQEKAFSQAIKIIMNSFYG--VLGSSGCRFFDARLASSI 522
Query: 1423 VQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI 1459
G + + + E +VIYGDTD V +
Sbjct: 523 TMRGHEIMIQTKRLI---EARGYQVIYGDTDSTFVAL 556
Score = 59 (25.8 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 37/143 (25%), Positives = 58/143 (40%)
Query: 965 QAESR-GDLRPDPRYDSINVVALAFENDSDHAVEIYVLLYCKSESHQRSLVGIPD---CK 1020
QA+ R GD P ++N+V+L E S+ + + L +S ++G P+
Sbjct: 143 QAKCRQGDYLP-----TLNMVSLDIEC-SEKGLLYSIGLDSPMDSRV-IMIGQPEPAETP 195
Query: 1021 VFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAA-H---LGIGLLNDISR 1076
+ E L I FDPD+++GW + L +RA H L IG S
Sbjct: 196 IQWVEDEYQLLKALIAWFEQFDPDVIIGWSVVDFDFRLLHKRAEFHKLKLTIGRAQQPSF 255
Query: 1077 TPLESKIAAGDSEISERGITDNM 1099
S+ G I R + D +
Sbjct: 256 FRTASQTQQGFISIPGRVVLDGI 278
>TIGR_CMR|VC_1212 [details] [associations]
symbol:VC_1212 "DNA polymerase II" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
SUPFAM:SSF53098 GO:GO:0003887 KO:K02336 OMA:VLDGIDW
ProtClustDB:PRK05762 Gene3D:3.90.1600.10 InterPro:IPR023211
HSSP:P21189 PIR:E82227 RefSeq:NP_230857.1 ProteinModelPortal:Q9KSP4
DNASU:2614645 GeneID:2614645 KEGG:vch:VC1212 PATRIC:20081512
Uniprot:Q9KSP4
Length = 787
Score = 98 (39.6 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 48/185 (25%), Positives = 91/185 (49%)
Query: 1122 RTHASGLHVGGRIVLN-VWRLMRGEVKLNMYTVEAVAETVLR--RKIPSIPFRV--LTKW 1176
+T + + GR+VL+ + L +++E+V++ +L + I ++ R+ + +
Sbjct: 261 QTQQGFISIPGRVVLDGIDTLKTATYHFRSWSLESVSQELLGEGKAIHNVHDRMDEINQM 320
Query: 1177 FASG-PGRARYRCVEYVVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRV 1235
F P ARY + V+ +N +I +++ + +R+ G++ + GS
Sbjct: 321 FRHDKPSLARYNLQDCVL----VN-KIFAATHLLDFAIQRSRLTGVELDRI--GGSVAAF 373
Query: 1236 ESMLLRLAHTQNYLA--ISPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPS 1293
++ L H Y+A + P N VAS P VM+ G Y D V+VLDF+SLYPS
Sbjct: 374 TNLYLPQLHRAGYVAPNLQPENW-VAS-PG----GYVMDSIPGLY-DSVLVLDFKSLYPS 426
Query: 1294 MMIAY 1298
++ ++
Sbjct: 427 IIRSF 431
Score = 71 (30.1 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 31/97 (31%), Positives = 43/97 (44%)
Query: 1365 TRIMVKQAIKKL-APSQQILHRIFNARQLALKLIANVTYGYTAAGFSG-RMPCAELADSI 1422
T+ + + I+KL A + A A+K+I N YG G SG R A LA SI
Sbjct: 465 TKHFLPEMIEKLWAARDEAKRNQEKAFSQAIKIIMNSFYG--VLGSSGCRFFDARLASSI 522
Query: 1423 VQCGRSTLEKAISFVNENEKWKAKVIYGDTDRYTVCI 1459
G + + + E +VIYGDTD V +
Sbjct: 523 TMRGHEIMIQTKRLI---EARGYQVIYGDTDSTFVAL 556
Score = 59 (25.8 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 37/143 (25%), Positives = 58/143 (40%)
Query: 965 QAESR-GDLRPDPRYDSINVVALAFENDSDHAVEIYVLLYCKSESHQRSLVGIPD---CK 1020
QA+ R GD P ++N+V+L E S+ + + L +S ++G P+
Sbjct: 143 QAKCRQGDYLP-----TLNMVSLDIEC-SEKGLLYSIGLDSPMDSRV-IMIGQPEPAETP 195
Query: 1021 VFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAERAA-H---LGIGLLNDISR 1076
+ E L I FDPD+++GW + L +RA H L IG S
Sbjct: 196 IQWVEDEYQLLKALIAWFEQFDPDVIIGWSVVDFDFRLLHKRAEFHKLKLTIGRAQQPSF 255
Query: 1077 TPLESKIAAGDSEISERGITDNM 1099
S+ G I R + D +
Sbjct: 256 FRTASQTQQGFISIPGRVVLDGI 278
>UNIPROTKB|Q59J89 [details] [associations]
symbol:Q59J89 "DNA polymerase" species:34903 "Trachemys
scripta" [GO:0000084 "S phase of mitotic cell cycle" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005635
"nuclear envelope" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=ISS] [GO:0006270 "DNA replication
initiation" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] [GO:0006272 "leading
strand elongation" evidence=ISS] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISS] [GO:0008283 "cell
proliferation" evidence=ISS] [GO:0016363 "nuclear matrix"
evidence=ISS] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0000785
"chromatin" evidence=ISS] [GO:0003896 "DNA primase activity"
evidence=ISS] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005635 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
GO:GO:0003677 GO:GO:0008283 GO:GO:0003682 GO:GO:0006270
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084
GO:GO:0006303 GO:GO:0003887 GO:GO:0006273 GO:GO:0006269
GO:GO:0006272 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
HOVERGEN:HBG080008 EMBL:AB178526 Uniprot:Q59J89
Length = 1441
Score = 140 (54.3 bits), Expect = 0.00041, Sum P(4) = 0.00041
Identities = 82/337 (24%), Positives = 142/337 (42%)
Query: 1132 GRIVLNVWRLMRGEVKLNMYTVEAVAETVLRRKIPSIPFRVLTKWFASGPGRARYRCVEY 1191
GR++ +V + ++ Y + + +L+ + +IP + + S Y +E
Sbjct: 657 GRMICDVEISAKELIRCKSYHLSELVHQILKTERITIPPEEIRNMY-SDSSHLLYM-LEN 714
Query: 1192 VVGRAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAI 1251
A+ L+IM +L+++ ++ + G + G R E +LL + ++Y+
Sbjct: 715 TWTDARFILQIMCELNVLPLALQITNISGNVMSRTMMGGRSERNEFLLLHAFYERDYIV- 773
Query: 1252 SPGNHQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMMI-----AYNLCFCTCL 1306
P + QV +P + LV E E + + ++ Y ++ + F L
Sbjct: 774 -P-DKQVFKKPQQK---LVDEDEGVEDQNKSKIGRKKAAYAGGLVLDPKVGFYDTFILLL 828
Query: 1307 --GKILPSKENTLGVSSFRPDLHVLRDLKDELLIPPNGVMY-VP----PKVRKGVLPRLL 1359
+ PS + F V R+ D +GV +P P + G+LP+ +
Sbjct: 829 DFNSLYPSIIQEFNIC-FTT---VQRESSDAQKRAEDGVQEEIPELPDPSLEMGILPKEI 884
Query: 1360 EEILSTRIMVKQAIKK--LAPSQQILHRIFNARQLALKLIANVTYGYTAAGFS-GRMPCA 1416
+++ R VKQ +K+ L P L+ ++ RQ ALKL AN YG GFS R
Sbjct: 885 RKLVERRRQVKQLMKQPDLNPD---LYLQYDIRQKALKLTANSMYG--CLGFSYSRFYAK 939
Query: 1417 ELADSIVQCGRSTLEKAISFVNENEKWKAKVIYGDTD 1453
LA + GR L V +K +VIYGDTD
Sbjct: 940 PLAALVTHKGREILMHTKEMV---QKMNLEVIYGDTD 973
Score = 59 (25.8 bits), Expect = 0.00041, Sum P(4) = 0.00041
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 1011 RSLVGIPDCKVFVCSKEIHLFSHFIKILCSFDPDILMGWDIQGGSLGFLAER 1062
+ ++ + V + + E L F+ + DPDI++G +I G L L +R
Sbjct: 569 KEIIKSKNSNVEIAATERTLLGFFLAKVHKIDPDIIVGHNIYGFDLEVLLQR 620
Score = 41 (19.5 bits), Expect = 0.00041, Sum P(4) = 0.00041
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 1436 FVNENEKWKAKVIYGDTDRYTVC 1458
++N E K K GDT Y +C
Sbjct: 1129 WINSQEGRKVKA--GDTVSYVIC 1149
Score = 40 (19.1 bits), Expect = 0.00041, Sum P(4) = 0.00041
Identities = 16/58 (27%), Positives = 22/58 (37%)
Query: 457 DIPQATDT-EALGLLKWLATSQAAEDLNSDDELLHETILSPLLPETTIDKVLEKANTD 513
D P D E G LK + E D + LS LP+ + ++K TD
Sbjct: 229 DEPMEADIPETAGALKKEQKLEKKETQQVDSVKEDASFLSSFLPDMSCWTRMDKDETD 286
Score = 40 (19.1 bits), Expect = 0.00041, Sum P(4) = 0.00041
Identities = 27/106 (25%), Positives = 39/106 (36%)
Query: 144 QFLVDYNLYGMGHLHLSKLKFRHPVPDAFFPRKFNYSSKQASADF-------------QV 190
Q V Y + + K + +PD P K +Y + SA+F V
Sbjct: 390 QIAVKYKIMKFRSKKVEK-NYAFEIPDV--PAKSDYLEVRYSAEFPRLPQDLKGETFSHV 446
Query: 191 IGCG--SYPMHLMGHQIKTLSGLNIKVFLSLKEMLQWMVCLIHCSA 234
G S + LM +IK S L IK L + W C + +A
Sbjct: 447 FGTNTSSLELLLMSRKIKGPSWLEIKNPQPLSHPVSW--CKVEATA 490
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1459 1440 0.00093 124 3 11 22 0.41 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 91
No. of states in DFA: 633 (67 KB)
Total size of DFA: 634 KB (2279 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 137.45u 0.10s 137.55t Elapsed: 00:00:22
Total cpu time: 137.50u 0.11s 137.61t Elapsed: 00:00:22
Start: Tue May 21 12:01:08 2013 End: Tue May 21 12:01:30 2013