BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000505
(1458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 179 bits (455), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 116/165 (70%), Gaps = 3/165 (1%)
Query: 646 EIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEM 705
E+ ++ G + + G AYVPQ +WIQ ++RENILFG + + +Y V++ CAL D+E+
Sbjct: 54 EMDKVEGH-VAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEI 112
Query: 706 WADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL- 764
GD + +GE+G+NLSGGQKQR+ LARAVYSN+D+Y+FDDP SAVDAH G H+F+ +
Sbjct: 113 LPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIG 172
Query: 765 -MGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
G+L KT + TH + +L D+++VM GKI + G Y++L+A
Sbjct: 173 PKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA 217
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 101/245 (41%), Gaps = 27/245 (11%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I + N + + P L GIT + P + VVG+ G GKS+L+ AL ++ G +
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHL---A 1324
I G ++ +PQ + ++R N+ Q + VI C L
Sbjct: 64 IKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDL 110
Query: 1325 EIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQ 1384
EI+ R + E G N S GQ+Q V D+ +++D I
Sbjct: 111 EILPSGDR---TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF 167
Query: 1385 QTI---REETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1441
+ + + T I V H + + D+++V+ GK+ E S ++LL + +
Sbjct: 168 ENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGA-----F 222
Query: 1442 AEFLR 1446
AEFLR
Sbjct: 223 AEFLR 227
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 150 bits (378), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 141/256 (55%), Gaps = 6/256 (2%)
Query: 1192 VIKNSRPSPE--WPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKS 1249
+I+NS + WPS G++ +++L +Y +L+ I+ + +++G++GRTGSGKS
Sbjct: 2 LIENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKS 61
Query: 1250 TLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQH 1309
TL+ A R++ + G I IDGV I L+ R +IPQ +F GT R NLDP H
Sbjct: 62 TLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH 120
Query: 1310 SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXD 1369
SDQEIW+V ++ L ++ Q LD + + G S G +QL+C D
Sbjct: 121 SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD 180
Query: 1370 EATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQL 1429
E +A +D T +I++T+++ + CTVI RI +++ D LV++E KV +YDS +
Sbjct: 181 EPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDS---I 237
Query: 1430 LEDNSSSFSKLVAEFL 1445
LE + VA F+
Sbjct: 238 LELYHYPADRFVAGFI 253
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 3/142 (2%)
Query: 660 KKAY--VPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717
+KA+ +PQ +I +GT R+N+ +V + L IE + V+ +
Sbjct: 93 RKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152
Query: 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTT 777
G LS G KQ + LAR+V S + + + D+P + +D T + ++ L + TV+
Sbjct: 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT-YQIIRRTLKQAFADCTVILCE 211
Query: 778 HQLEFLDAADLVLVMKDGKIEQ 799
++E + D LV+++ K+ Q
Sbjct: 212 ARIEAMLECDQFLVIEENKVRQ 233
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 133/259 (51%), Gaps = 6/259 (2%)
Query: 1175 SVERILQFTNIPSEAPLVIKNSRPSPEWPS-SGKIELENLLVQYNPTLPMVLKGITCTFP 1233
S +R+L+ N E P I+ + + P+ G + EN+ +Y VL G+ +
Sbjct: 312 SAKRVLEVLN---EKP-AIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVK 367
Query: 1234 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPM 1293
+ V+G TGSGKSTL+ + R+++P GR+ +D +D+ + L+DLR +S +PQ+ +
Sbjct: 368 PGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETV 427
Query: 1294 LFQGTVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352
LF GT++ NL E +D EI E + + + D+ V G N+S GQ+Q
Sbjct: 428 LFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQR 487
Query: 1353 VCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLV 1412
+ D+ T+S+D T+ I ++ T CT + +IPT + D +
Sbjct: 488 LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKI 547
Query: 1413 LVLDEGKVLEYDSPRQLLE 1431
LVL EGKV + + ++LLE
Sbjct: 548 LVLHEGKVAGFGTHKELLE 566
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 12/157 (7%)
Query: 657 VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD---IEMWADGDLSV 713
+ G + VPQ + + +GTI+EN+ +G++ + +E++E + Q I +G S
Sbjct: 415 LRGHISAVPQETVLFSGTIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSR 472
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-- 771
V G N SGGQKQR+ +ARA+ V I DD S+VD T K+ L GL
Sbjct: 473 VERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITE----KRILDGLKRYTKG 528
Query: 772 -TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLI 807
T T ++ AD +LV+ +GK+ G +++L+
Sbjct: 529 CTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELL 565
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 129 bits (325), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 145/280 (51%), Gaps = 12/280 (4%)
Query: 1169 VENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPS-SGKIELENLLVQYNPTLPMVLKG 1227
++ + S ERI + ++ E K+ + E G+IE +N+ Y+ P VLK
Sbjct: 320 IQMALASAERIFEILDLEEE-----KDDPDAVELREVRGEIEFKNVWFSYDKKKP-VLKD 373
Query: 1228 ITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287
IT +K+ +VG TGSGK+T++ L R + G+IL+DG+DI I LRS + I
Sbjct: 374 ITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGI 433
Query: 1288 IPQDPMLFQGTVRTNL---DPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGEN 1344
+ QD +LF TV+ NL +P +D+EI E H ++ + + ++GE+
Sbjct: 434 VLQDTILFSTTVKENLKYGNP--GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGED 491
Query: 1345 WSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETSRCTVITVAHRIP 1404
S GQRQL+ DEAT+++DT T+ IQ + + T I +AHR+
Sbjct: 492 LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLN 551
Query: 1405 TVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEF 1444
T+ + DL++VL +G+++E +L++ + +++
Sbjct: 552 TIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQY 591
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/369 (21%), Positives = 154/369 (41%), Gaps = 32/369 (8%)
Query: 459 ETLKSMRVLKLLSWEQEFXXXXXXXXEIER-DSLKKYLYTCSAIAFLFWAS-PTLVSVIT 516
E + + V+KL + E++ E+E+ D + + L A +F P L++++
Sbjct: 221 EDISGLTVIKLFTREEK---------EMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVN 271
Query: 517 ---------FGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQ 567
FG + LK +T G + + + R P+ L +MI S RI
Sbjct: 272 NLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIF 331
Query: 568 EFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMXXXXXX 627
E + + +K + I+ + +++D ++ K T + K+
Sbjct: 332 EILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTG 391
Query: 628 XXXXXXXXXXXXXXXXXXEIPRISGAAIK------VHGKKAYVPQSSWIQTGTIRENILF 681
+ G I+ + V Q + + + T++EN+ +
Sbjct: 392 SGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKY 451
Query: 682 GKDMRQSFYEEVLEGCALNQD---IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738
G EE+ E L I+ +G +V+ + G +LS GQ+Q + + RA +N
Sbjct: 452 GNPGATD--EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN 509
Query: 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798
+ I D+ S VD T + + + L+ KT + H+L + ADL++V++DG+I
Sbjct: 510 PKILILDEATSNVDTKTEKSI-QAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIV 568
Query: 799 QSGKYEDLI 807
+ GK+++LI
Sbjct: 569 EMGKHDELI 577
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 96/156 (61%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q SWI GTI+ENI+FG + Y+ V++ C L QDI +A+ D
Sbjct: 91 SEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQD 150
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+V+GE G+ LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F+ C+ L++
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 210
Query: 771 KTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806
KT + T ++E L AD +L++ G G + +L
Sbjct: 211 KTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 86/223 (38%), Gaps = 18/223 (8%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+ +L + NP VLK I + + + G TGSGK++L+ + +E S G I
Sbjct: 41 VSFSHLCLVGNP----VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK 96
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIV 1327
G R+S Q + GT++ N+ + + V+ C L + +
Sbjct: 97 HSG-------------RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDI 143
Query: 1328 RQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTAT-DNVIQQT 1386
+ + + E G S GQR + D +D T + V +
Sbjct: 144 TKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 1387 IREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQL 1429
+ + + T I V ++ + D +L+L +G Y + +L
Sbjct: 204 VCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 96/156 (61%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q SWI GTI+ENI+FG + Y+ V++ C L QDI +A+ D
Sbjct: 91 SEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQD 150
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+V+GE G+ LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F+ C+ L++
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 210
Query: 771 KTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806
KT + T ++E L AD +L++ G G + +L
Sbjct: 211 KTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 100/263 (38%), Gaps = 41/263 (15%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+ +L + NP VLK I + + + G TGSGK++L+ + +E S G I
Sbjct: 41 VSFSHLCLVGNP----VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK 96
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIV 1327
G R+S Q + GT++ N+ + + V+ C L + +
Sbjct: 97 HSG-------------RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDI 143
Query: 1328 RQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTAT-DNVIQQT 1386
+ + + E G S GQR + D +D T + V +
Sbjct: 144 TKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 1387 IREETSRCTVITVAHRIPTVIDNDLVLVLDEG--------------------KVLEYDSP 1426
+ + + T I V ++ + D +L+L +G K++ YD+
Sbjct: 204 VCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTF 263
Query: 1427 RQLLEDNSSSFSKLVAEFLRRTS 1449
Q E+ SS ++ E LRR S
Sbjct: 264 DQFTEERRSS---ILTETLRRFS 283
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 95/156 (60%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q SWI GTI+ENI+FG + Y V++ C L +DI +A+ D
Sbjct: 61 SEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKD 120
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
V+GE GI LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F+ C+ L++
Sbjct: 121 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 180
Query: 771 KTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806
KT + T ++E L AD +L++ +G G + +L
Sbjct: 181 KTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 216
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 14/224 (6%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
++ +EN+ + VLK I + + V G TG+GK++L+ + +EPS G+I
Sbjct: 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 65
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEI 1326
G R+S Q + GT++ N+ + + VI C L E
Sbjct: 66 KHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED 112
Query: 1327 VRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDN-VIQQ 1385
+ + + + E G S GQR + D +D T+ + +
Sbjct: 113 ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 172
Query: 1386 TIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQL 1429
+ + + T I V ++ + D +L+L EG Y + +L
Sbjct: 173 CVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 216
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 95/156 (60%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q SWI GTI+ENI+FG + Y V++ C L +DI +A+ D
Sbjct: 73 SEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKD 132
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
V+GE GI LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F+ C+ L++
Sbjct: 133 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 192
Query: 771 KTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806
KT + T ++E L AD +L++ +G G + +L
Sbjct: 193 KTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 228
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 14/221 (6%)
Query: 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1269
+EN+ + VLK I + + V G TG+GK++L+ + +EPS G+I
Sbjct: 21 MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 80
Query: 1270 GVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQ 1329
G R+S Q + GT++ N+ + + VI C L E + +
Sbjct: 81 G-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISK 127
Query: 1330 DQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDN-VIQQTIR 1388
+ + E G S GQR + D +D T+ + + +
Sbjct: 128 FAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVC 187
Query: 1389 EETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQL 1429
+ + T I V ++ + D +L+L EG Y + +L
Sbjct: 188 KLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 228
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 95/156 (60%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q SWI GTI+ENI+ G + Y+ V++ C L QDI +A+ D
Sbjct: 91 SEGIIKHSGRVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQD 150
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+V+GE G+ LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F+ C+ L++
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 210
Query: 771 KTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806
KT + T ++E L AD +L++ G G + +L
Sbjct: 211 KTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 100/263 (38%), Gaps = 41/263 (15%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+ +L + NP VLK I + + + G TGSGK++L+ + +E S G I
Sbjct: 41 VSFSHLCLVGNP----VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK 96
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIV 1327
G R+S Q + GT++ N+ + + V+ C L + +
Sbjct: 97 HSG-------------RVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQDI 143
Query: 1328 RQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTAT-DNVIQQT 1386
+ + + E G S GQR + D +D T + V +
Sbjct: 144 TKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 1387 IREETSRCTVITVAHRIPTVIDNDLVLVLDEG--------------------KVLEYDSP 1426
+ + + T I V ++ + D +L+L +G K++ YD+
Sbjct: 204 VCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTF 263
Query: 1427 RQLLEDNSSSFSKLVAEFLRRTS 1449
Q E+ SS ++ E LRR S
Sbjct: 264 DQFTEERRSS---ILTETLRRFS 283
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 95/156 (60%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q SWI GTI+ENI+ G + Y+ V++ C L QDI +A+ D
Sbjct: 91 SEGIIKHSGRVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQD 150
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+V+GE G+ LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F+ C+ L++
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 210
Query: 771 KTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806
KT + T ++E L AD +L++ G G + +L
Sbjct: 211 KTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 100/263 (38%), Gaps = 41/263 (15%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+ +L + NP VLK I + + + G TGSGK++L+ + +E S G I
Sbjct: 41 VSFSHLCLVGNP----VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK 96
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIV 1327
G R+S Q + GT++ N+ + + V+ C L + +
Sbjct: 97 HSG-------------RVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDI 143
Query: 1328 RQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTAT-DNVIQQT 1386
+ + + E G S GQR + D +D T + V +
Sbjct: 144 TKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 1387 IREETSRCTVITVAHRIPTVIDNDLVLVLDEG--------------------KVLEYDSP 1426
+ + + T I V ++ + D +L+L +G K++ YD+
Sbjct: 204 VCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTF 263
Query: 1427 RQLLEDNSSSFSKLVAEFLRRTS 1449
Q E+ SS ++ E LRR S
Sbjct: 264 DQFTEERRSS---ILTETLRRFS 283
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 94/156 (60%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q SWI GTI+ENI+ G + Y V++ C L +DI +A+ D
Sbjct: 91 SEGKIKHSGRISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKD 150
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
V+GE GI LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F+ C+ L++
Sbjct: 151 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 210
Query: 771 KTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806
KT + T ++E L AD +L++ +G G + +L
Sbjct: 211 KTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 246
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 82/207 (39%), Gaps = 14/207 (6%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
VLK I + + V G TG+GK++L+ + +EPS G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1284 RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGE 1343
R+S Q + GT++ N+ + + VI C L E + + + + E G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 159
Query: 1344 NWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDN-VIQQTIREETSRCTVITVAHR 1402
S GQR + D +D T+ + + + + + T I V +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 219
Query: 1403 IPTVIDNDLVLVLDEGKVLEYDSPRQL 1429
+ + D +L+L EG Y + +L
Sbjct: 220 MEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 123 bits (308), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 94/156 (60%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q SWI GTI+ENI+FG + Y V++ C L +DI +A+ D
Sbjct: 91 SEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKD 150
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
V+GE GI LS GQ+ +I LARAVY ++D+Y+ D PF +D T +F+ C+ L++
Sbjct: 151 NIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 210
Query: 771 KTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806
KT + T ++E L AD +L++ +G G + +L
Sbjct: 211 KTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 246
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 82/207 (39%), Gaps = 14/207 (6%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
VLK I + + V G TG+GK++L+ + +EPS G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1284 RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGE 1343
R+S Q + GT++ N+ + + VI C L E + + + + E G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 159
Query: 1344 NWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDN-VIQQTIREETSRCTVITVAHR 1402
S GQ+ + D +D T+ + + + + + T I V +
Sbjct: 160 TLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 219
Query: 1403 IPTVIDNDLVLVLDEGKVLEYDSPRQL 1429
+ + D +L+L EG Y + +L
Sbjct: 220 MEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 95/156 (60%), Gaps = 1/156 (0%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q+SWI GTI+ENI+ G + Y V++ C L +DI +A+ D
Sbjct: 91 SEGKIKHSGRISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKD 149
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
V+GE GI LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F+ C+ L++
Sbjct: 150 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 209
Query: 771 KTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806
KT + T ++E L AD +L++ +G G + +L
Sbjct: 210 KTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 15/207 (7%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
VLK I + + V G TG+GK++L+ + +EPS G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1284 RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGE 1343
R+S Q+ + GT++ N+ + + + VI C L E + + + + E G
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 158
Query: 1344 NWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDN-VIQQTIREETSRCTVITVAHR 1402
S GQR + D +D T+ + + + + + T I V +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 218
Query: 1403 IPTVIDNDLVLVLDEGKVLEYDSPRQL 1429
+ + D +L+L EG Y + +L
Sbjct: 219 MEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 95/156 (60%), Gaps = 1/156 (0%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q+SWI GTI+ENI+ G + Y V++ C L +DI +A+ D
Sbjct: 91 SEGKIKHSGRISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKD 149
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
V+GE GI LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F+ C+ L++
Sbjct: 150 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 209
Query: 771 KTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806
KT + T ++E L AD +L++ +G G + +L
Sbjct: 210 KTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 15/207 (7%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
VLK I + + V G TG+GK++L+ + +EPS G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1284 RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGE 1343
R+S Q+ + GT++ N+ + + + VI C L E + + + + E G
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 158
Query: 1344 NWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDN-VIQQTIREETSRCTVITVAHR 1402
S GQR + D +D T+ + + + + + T I V +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 218
Query: 1403 IPTVIDNDLVLVLDEGKVLEYDSPRQL 1429
+ + D +L+L EG Y + +L
Sbjct: 219 MEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 95/156 (60%), Gaps = 1/156 (0%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q SWI GTI+ENI+ G + Y+ V++ C L QDI +A+ D
Sbjct: 91 SEGIIKHSGRVSFCSQFSWIMPGTIKENII-GVSYDEYRYKSVVKACQLQQDITKFAEQD 149
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+V+GE G+ LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F+ C+ L++
Sbjct: 150 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 209
Query: 771 KTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806
KT + T ++E L AD +L++ G G + +L
Sbjct: 210 KTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 245
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 101/263 (38%), Gaps = 42/263 (15%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+ +L + NP VLK I + + + G TGSGK++L+ + +E S G I
Sbjct: 41 VSFSHLCLVGNP----VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK 96
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIV 1327
G R+S Q + GT++ N+ + + + V+ C L + +
Sbjct: 97 HSG-------------RVSFCSQFSWIMPGTIKENIIGV-SYDEYRYKSVVKACQLQQDI 142
Query: 1328 RQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTAT-DNVIQQT 1386
+ + + E G S GQR + D +D T + V +
Sbjct: 143 TKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 202
Query: 1387 IREETSRCTVITVAHRIPTVIDNDLVLVLDEG--------------------KVLEYDSP 1426
+ + + T I V ++ + D +L+L +G K++ YD+
Sbjct: 203 VCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTF 262
Query: 1427 RQLLEDNSSSFSKLVAEFLRRTS 1449
Q E+ SS ++ E LRR S
Sbjct: 263 DQFTEERRSS---ILTETLRRFS 282
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 94/156 (60%), Gaps = 1/156 (0%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q SWI GTI+ENI+ G + Y V++ C L +DI +A+ D
Sbjct: 61 SEGKIKHSGRISFCSQFSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKD 119
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
V+GE GI LSGGQ+ RI LARAVY ++D+Y+ D PF +D T +F+ C+ L++
Sbjct: 120 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 179
Query: 771 KTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806
KT + T ++E L AD +L++ +G G + +L
Sbjct: 180 KTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 215
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 15/224 (6%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
++ +EN+ + VLK I + + V G TG+GK++L+ + +EPS G+I
Sbjct: 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 65
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEI 1326
G R+S Q + GT++ N+ + + + VI C L E
Sbjct: 66 KHSG-------------RISFCSQFSWIMPGTIKENIIGV-SYDEYRYRSVIKACQLEED 111
Query: 1327 VRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDN-VIQQ 1385
+ + + + E G S GQR + D +D T+ + +
Sbjct: 112 ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 171
Query: 1386 TIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQL 1429
+ + + T I V ++ + D +L+L EG Y + +L
Sbjct: 172 CVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 215
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 126/238 (52%), Gaps = 6/238 (2%)
Query: 1206 GKIELENLLVQY--NPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
G ++ ++ Y P++P VL+G++ + + +VG +G GKST++Q L R +P
Sbjct: 1029 GNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL---DPLEQHSDQEIWEVINK 1320
G + +DG +I + +Q LR++L I+ Q+P+LF ++ N+ D S +EI +
Sbjct: 1088 GSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKE 1147
Query: 1321 CHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATD 1380
++ + + + V + G S GQ+Q + DEAT+++DT ++
Sbjct: 1148 ANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESE 1207
Query: 1381 NVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFS 1438
V+Q+ + + T I +AHR+ T+ + DL++V+ GKV E+ + +QLL FS
Sbjct: 1208 KVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFS 1265
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 121/239 (50%), Gaps = 5/239 (2%)
Query: 1206 GKIELENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
G +E +N+ Y P+ +LKG+ + + +VG +G GKST +Q + R+ +P
Sbjct: 386 GNLEFKNIHFSY-PSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWEVINKCH 1322
G + IDG DI I ++ LR + ++ Q+P+LF T+ N+ E + EI + + + +
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEAN 504
Query: 1323 LAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNV 1382
+ + + D V E G S GQ+Q + DEAT+++DT ++ V
Sbjct: 505 AYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 1383 IQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1441
+Q + + T I +AHR+ TV + D++ D G ++E + +L+ + F KLV
Sbjct: 565 VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYF-KLV 622
Score = 80.1 bits (196), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Query: 674 TIRENILFGKDMRQSFYEEVLEGCA---LNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730
+I ENI +G + R YEE++ ++Q I+ D + VG++G LSGGQKQRI
Sbjct: 1122 SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA 1181
Query: 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVL 790
+ARA+ + + D+ SA+D + + ++ L +T + H+L + ADL++
Sbjct: 1182 IARALVRQPHILLLDEATSALDTES-EKVVQEALDKAREGRTCIVIAHRLSTIQNADLIV 1240
Query: 791 VMKDGKIEQSGKYEDLIADQN 811
V+++GK+++ G ++ L+A +
Sbjct: 1241 VIQNGKVKEHGTHQQLLAQKG 1261
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 664 VPQSSWIQTGTIRENILFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721
V Q + TI ENI +G++ + V E A + +++ D ++VGERG L
Sbjct: 469 VSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFD-TLVGERGAQL 527
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
SGGQKQRI +ARA+ N + + D+ SA+D + + + L +T + H+L
Sbjct: 528 SGGQKQRIAIARALVRNPKILLLDEATSALDTES-EAVVQAALDKAREGRTTIVIAHRLS 586
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDLIADQN 811
+ AD++ G I + G +++L+ ++
Sbjct: 587 TVRNADVIAGFDGGVIVEQGNHDELMREKG 616
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 126/238 (52%), Gaps = 6/238 (2%)
Query: 1206 GKIELENLLVQY--NPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
G ++ ++ Y P++P VL+G++ + + +VG +G GKST++Q L R +P
Sbjct: 1029 GNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL---DPLEQHSDQEIWEVINK 1320
G + +DG +I + +Q LR++L I+ Q+P+LF ++ N+ D S +EI +
Sbjct: 1088 GSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKE 1147
Query: 1321 CHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATD 1380
++ + + + V + G S GQ+Q + DEAT+++DT ++
Sbjct: 1148 ANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESE 1207
Query: 1381 NVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFS 1438
V+Q+ + + T I +AHR+ T+ + DL++V+ GKV E+ + +QLL FS
Sbjct: 1208 KVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFS 1265
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 121/239 (50%), Gaps = 5/239 (2%)
Query: 1206 GKIELENLLVQYNPTLP--MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
G +E +N+ Y P+ +LKG+ + + +VG +G GKST +Q + R+ +P
Sbjct: 386 GNLEFKNIHFSY-PSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD-PLEQHSDQEIWEVINKCH 1322
G + IDG DI I ++ LR + ++ Q+P+LF T+ N+ E + EI + + + +
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEAN 504
Query: 1323 LAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNV 1382
+ + + D V E G S GQ+Q + DEAT+++DT ++ V
Sbjct: 505 AYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 1383 IQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1441
+Q + + T I +AHR+ TV + D++ D G ++E + +L+ + F KLV
Sbjct: 565 VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYF-KLV 622
Score = 80.1 bits (196), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Query: 674 TIRENILFGKDMRQSFYEEVLEGCA---LNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730
+I ENI +G + R YEE++ ++Q I+ D + VG++G LSGGQKQRI
Sbjct: 1122 SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA 1181
Query: 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVL 790
+ARA+ + + D+ SA+D + + ++ L +T + H+L + ADL++
Sbjct: 1182 IARALVRQPHILLLDEATSALDTES-EKVVQEALDKAREGRTCIVIAHRLSTIQNADLIV 1240
Query: 791 VMKDGKIEQSGKYEDLIADQN 811
V+++GK+++ G ++ L+A +
Sbjct: 1241 VIQNGKVKEHGTHQQLLAQKG 1261
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 664 VPQSSWIQTGTIRENILFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721
V Q + TI ENI +G++ + V E A + +++ D ++VGERG L
Sbjct: 469 VSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFD-TLVGERGAQL 527
Query: 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLE 781
SGGQKQRI +ARA+ N + + D+ SA+D + + + L +T + H+L
Sbjct: 528 SGGQKQRIAIARALVRNPKILLLDEATSALDTES-EAVVQAALDKAREGRTTIVIAHRLS 586
Query: 782 FLDAADLVLVMKDGKIEQSGKYEDLIADQN 811
+ AD++ G I + G +++L+ ++
Sbjct: 587 TVRNADVIAGFDGGVIVEQGNHDELMREKG 616
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 119/233 (51%), Gaps = 2/233 (0%)
Query: 1205 SGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGG 1264
+G+++++++ Y L ++ + P K + +VGR+GSGKST+ R + G
Sbjct: 339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSG 398
Query: 1265 RILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQ--HSDQEIWEVINKCH 1322
I +DG D+ L +LR +++ Q+ LF T+ N+ + ++ ++I + + H
Sbjct: 399 SICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAH 458
Query: 1323 LAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNV 1382
E + + LD + E+G + S GQRQ V DEAT+++DT ++
Sbjct: 459 AMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERA 518
Query: 1383 IQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSS 1435
IQ + E TV+ +AHR+ T+ D +LV+DEG+++E LL + +
Sbjct: 519 IQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGA 571
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 85/154 (55%), Gaps = 5/154 (3%)
Query: 662 AYVPQSSWIQTGTIRENILF---GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718
A V Q+ + TI NI + G+ R+ + + A+ + IE G +V+GE G
Sbjct: 420 ALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAM-EFIENMPQGLDTVIGENG 478
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTH 778
+LSGGQ+QR+ +ARA+ ++ V I D+ SA+D + + L L KTVL H
Sbjct: 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES-ERAIQAALDELQKNKTVLVIAH 537
Query: 779 QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNS 812
+L ++ AD +LV+ +G+I + G++ DL+A +
Sbjct: 538 RLSTIEQADEILVVDEGEIIERGRHADLLAQDGA 571
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 114/531 (21%), Positives = 207/531 (38%), Gaps = 68/531 (12%)
Query: 947 RAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLA 1006
R L+ T + RL ++ +S+ R ++FFD T + ++NR S+D + + + L+
Sbjct: 82 RVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLS 141
Query: 1007 GXXXXXXXXXXXXXXXXXXXWQVFPLFLVILG----ISIWYQAYYITTARELARMVGTRK 1062
+ L ++ I++ Y Y R+L ++
Sbjct: 142 DGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYL----RKLTKVTQDSL 197
Query: 1063 APILHHFSESIAGATTIRCFNQENRFLLRSHSLIDD---------YSCVTFHNCGTMEWL 1113
A E I T+R F +E + + S +D ++ F +
Sbjct: 198 AQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGN 257
Query: 1114 CXXXXXXXXXXXXXXXXXXXXXPRSA-------IDPSLAGLAATYGLNLNVLQAWV-IWN 1165
S+ + S+ GL++ Y + L A +W
Sbjct: 258 LIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWE 317
Query: 1166 LCNVENKM----------ISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLV 1215
L E K+ S + L+F N+ P PE P
Sbjct: 318 LLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYP-------ARPEVP------------ 358
Query: 1216 QYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM 1275
+ + + + P +VG +GSGKST++ L R+ +P+ G I +DG DI
Sbjct: 359 --------IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQ 410
Query: 1276 IGLQDLRSRLSIIPQDPMLFQGTVRTNL-----DPLEQHSDQEIWEVINKCHLAEIVRQD 1330
+ LRS++ + Q+P+LF ++ N+ DP + +EI V + +R
Sbjct: 411 LNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDP-SSVTAEEIQRVAEVANAVAFIRNF 469
Query: 1331 QRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREE 1390
+ + V E G S GQ+Q + DEAT+++D + ++Q+ +
Sbjct: 470 PQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL 529
Query: 1391 TSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLV 1441
TV+ +AHR+ T+ + ++V VLD+GK+ EY +LL + + KL+
Sbjct: 530 MDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLM 580
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 5/157 (3%)
Query: 660 KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD----IEMWADGDLSVVG 715
K V Q + + +I ENI +G D S E ++ A + I + G +VVG
Sbjct: 419 KIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVG 478
Query: 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLY 775
E+G+ LSGGQKQRI +ARA+ N + + D+ SA+DA +L ++ L L+ +TVL
Sbjct: 479 EKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN-EYLVQEALDRLMDGRTVLV 537
Query: 776 TTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNS 812
H+L + A++V V+ GKI + GK+E+L++ N
Sbjct: 538 IAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNG 574
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 93/156 (59%), Gaps = 1/156 (0%)
Query: 651 SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710
S IK G+ ++ Q SWI GTI+ENI+ G + Y V++ C L +DI +A+ D
Sbjct: 91 SEGKIKHSGRISFCSQFSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKD 149
Query: 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
V+GE GI LS GQ+ +I LARAVY ++D+Y+ D PF +D T +F+ C+ L++
Sbjct: 150 NIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 209
Query: 771 KTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806
KT + T ++E L AD +L++ +G G + +L
Sbjct: 210 KTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 15/207 (7%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
VLK I + + V G TG+GK++L+ + +EPS G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1284 RLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGE 1343
R+S Q + GT++ N+ + + + VI C L E + + + + E G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 158
Query: 1344 NWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDN-VIQQTIREETSRCTVITVAHR 1402
S GQ+ + D +D T+ + + + + + T I V +
Sbjct: 159 TLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 218
Query: 1403 IPTVIDNDLVLVLDEGKVLEYDSPRQL 1429
+ + D +L+L EG Y + +L
Sbjct: 219 MEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 2/230 (0%)
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
++G +E N+ Y L+ I P K + +VGR+GSGKST+ + R +
Sbjct: 338 ATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLD--PLEQHSDQEIWEVINKC 1321
G IL+DG D+ L LR++++++ Q+ LF TV N+ EQ+S ++I E
Sbjct: 398 GEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMA 457
Query: 1322 HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDN 1381
+ + + + LD + E+G S GQRQ + DEAT+++DT ++
Sbjct: 458 YAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER 517
Query: 1382 VIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLE 1431
IQ + E T + +AHR+ T+ D ++V+++G ++E + LLE
Sbjct: 518 AIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLE 567
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 5/149 (3%)
Query: 662 AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGC--ALNQD-IEMWADGDLSVVGERG 718
A V Q+ + T+ NI + + Q E++ E A D I +G +V+GE G
Sbjct: 420 ALVSQNVHLFNDTVANNIAYART-EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENG 478
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTH 778
+ LSGGQ+QRI +ARA+ +S + I D+ SA+D + + L L +T L H
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTES-ERAIQAALDELQKNRTSLVIAH 537
Query: 779 QLEFLDAADLVLVMKDGKIEQSGKYEDLI 807
+L ++ AD ++V++DG I + G + DL+
Sbjct: 538 RLSTIEKADEIVVVEDGVIVERGTHNDLL 566
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 5/236 (2%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I N+ +Y P P++L I + + IG+VGR+GSGKSTL + + R P G++L
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLA--- 1324
IDG D+++ LR ++ ++ QD +L ++ N+ + + +VI LA
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL--ANPGMSVEKVIYAAKLAGAH 121
Query: 1325 EIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQ 1384
+ + + + + V E G S GQRQ + DEAT+++D +++VI
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1385 QTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKL 1440
+ + + TVI +AHR+ TV + D ++V+++GK++E ++LL + S +S L
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767
+G ++VGE+G LSGGQ+QRI +ARA+ +N + IFD+ SA+D + H+ + + +
Sbjct: 129 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKI 187
Query: 768 LSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNS 812
+TV+ H+L + AD ++VM+ GKI + GK+++L+++ S
Sbjct: 188 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPES 232
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 5/236 (2%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I N+ +Y P P++L I + + IG+VGR+GSGKSTL + + R P G++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLA--- 1324
IDG D+++ LR ++ ++ QD +L ++ N+ + + +VI LA
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL--ANPGMSVEKVIYAAKLAGAH 119
Query: 1325 EIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQ 1384
+ + + + + V E G S GQRQ + DEAT+++D +++VI
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1385 QTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKL 1440
+ + + TVI +AHR+ TV + D ++V+++GK++E ++LL + S +S L
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767
+G ++VGE+G LSGGQ+QRI +ARA+ +N + IFD+ SA+D + H+ + + +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKI 185
Query: 768 LSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNS 812
+TV+ H+L + AD ++VM+ GKI + GK+++L+++ S
Sbjct: 186 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPES 230
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 5/236 (2%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I N+ +Y P P++L I + + IG+VGR+GSGKSTL + + R P G++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLA--- 1324
IDG D+++ LR ++ ++ QD +L ++ N+ + + +VI LA
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL--ANPGMSVEKVIYAAKLAGAH 125
Query: 1325 EIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQ 1384
+ + + + + V E G S GQRQ + DEAT+++D +++VI
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1385 QTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKL 1440
+ + + TVI +AHR+ TV + D ++V+++GK++E ++LL + S +S L
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767
+G ++VGE+G LSGGQ+QRI +ARA+ +N + IFD+ SA+D + H+ + + +
Sbjct: 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKI 191
Query: 768 LSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNS 812
+TV+ H+L + AD ++VM+ GKI + GK+++L+++ S
Sbjct: 192 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPES 236
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 124/236 (52%), Gaps = 5/236 (2%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I N+ +Y P P++L I + + IG+VGR GSGKSTL + + R P G++L
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLA--- 1324
IDG D+++ LR ++ ++ QD +L ++ N+ + + +VI LA
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL--ANPGMSVEKVIYAAKLAGAH 121
Query: 1325 EIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQ 1384
+ + + + + V E G S GQRQ + DEAT+++D +++VI
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1385 QTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKL 1440
+ + + TVI +AHR+ TV + D ++V+++GK++E ++LL + S +S L
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767
+G ++VGE+G LSGGQ+QRI +ARA+ +N + IFD+ SA+D + H+ + + +
Sbjct: 129 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKI 187
Query: 768 LSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNS 812
+TV+ H+L + AD ++VM+ GKI + GK+++L+++ S
Sbjct: 188 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPES 232
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 117/229 (51%), Gaps = 2/229 (0%)
Query: 1204 SSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
++G +E N+ Y L+ I P K + +VGR+GSGKST+ + R +
Sbjct: 338 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL--DPLEQHSDQEIWEVINKC 1321
G IL+DG D+ L LR++++++ Q+ LF TV N+ E++S ++I E
Sbjct: 398 GHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMA 457
Query: 1322 HLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDN 1381
+ + + + LD + E+G S GQRQ + DEAT+++DT ++
Sbjct: 458 YAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER 517
Query: 1382 VIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLL 1430
IQ + E T + +AHR+ T+ D ++V+++G ++E + +LL
Sbjct: 518 AIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 566
Score = 70.5 bits (171), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 662 AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGC--ALNQD-IEMWADGDLSVVGERG 718
A V Q+ + T+ NI + + S E++ E A D I +G +++GE G
Sbjct: 420 ALVSQNVHLFNDTVANNIAYARTEEYS-REQIEEAARMAYAMDFINKMDNGLDTIIGENG 478
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTH 778
+ LSGGQ+QRI +ARA+ +S + I D+ SA+D + + L L +T L H
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTES-ERAIQAALDELQKNRTSLVIAH 537
Query: 779 QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQN 811
+L ++ AD ++V++DG I + G + +L+A
Sbjct: 538 RLSTIEQADEIVVVEDGIIVERGTHSELLAQHG 570
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 119/230 (51%), Gaps = 8/230 (3%)
Query: 1206 GKIELENLLVQY--NPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
G I +EN+ Y P +P +L+G+ + + +VG +G GKST+I L R +
Sbjct: 414 GDITVENVHFTYPSRPDVP-ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLK 472
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHL 1323
G+I IDGVD+ I L+ LR ++++ Q+P LF T+ N+ ++ +E E++ C +
Sbjct: 473 GKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITRE--EMVAACKM 530
Query: 1324 A---EIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATD 1380
A + ++ + V + G S GQ+Q + DEAT+++D ++
Sbjct: 531 ANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESE 590
Query: 1381 NVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLL 1430
++QQ + + T I +AHR+ T+ + DL++ G+V+E R L+
Sbjct: 591 GIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALM 640
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 120/238 (50%), Gaps = 8/238 (3%)
Query: 1206 GKIELENLLVQYNPTLPMV--LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
GK+ +N+ Y P P + LKG++ + + + +VG +G GKST++ L R + G
Sbjct: 1075 GKVIFKNVRFAY-PERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLG 1133
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTN----LDPLEQHSDQEIWEVIN 1319
G I IDG +I + + RS+++I+ Q+P LF ++ N LDP + ++ E
Sbjct: 1134 GEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP-SSVTMAQVEEAAR 1192
Query: 1320 KCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTAT 1379
++ + + + V + G S GQ+Q + DEAT+++DT +
Sbjct: 1193 LANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252
Query: 1380 DNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSF 1437
+ V+Q+ + T I +AHR+ TV++ D + V+ G ++E + QL+ + + +
Sbjct: 1253 EKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYY 1310
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 100/200 (50%), Gaps = 10/200 (5%)
Query: 662 AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL---NQDIEMWADGDLSVVGERG 718
A V Q + TI ENI GK+ EE++ C + + I+ +G ++VG+RG
Sbjct: 495 AVVSQEPALFNCTIEENISLGKEGITR--EEMVAACKMANAEKFIKTLPNGYNTLVGDRG 552
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTH 778
LSGGQKQRI +ARA+ N + + D+ SA+DA + + +Q L +T + H
Sbjct: 553 TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES-EGIVQQALDKAAKGRTTIIIAH 611
Query: 779 QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLS 838
+L + ADL++ K+G++ + G + L+A Q L + + D V+ E K S
Sbjct: 612 RLSTIRNADLIISCKNGQVVEVGDHRALMAQQG--LYYDLVTAQTFTDAVDSAAEGK-FS 668
Query: 839 RVPCQMSQITE-ERFARPIS 857
R Q +E E +R S
Sbjct: 669 RENSVARQTSEHEGLSRQAS 688
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Query: 662 AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCAL---NQDIEMWADGDLSVVGERG 718
A V Q + +I ENI++G D +V E L + I +G + VG+RG
Sbjct: 1156 AIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRG 1215
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTH 778
LSGGQKQRI +ARA+ N + + D+ SA+D + + ++ L +T + H
Sbjct: 1216 TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES-EKVVQEALDRAREGRTCIVIAH 1274
Query: 779 QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNS 812
+L + AD + V+ +G I + G + L++++ +
Sbjct: 1275 RLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGA 1308
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 5/236 (2%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I N+ +Y P P++L I + + IG+VGR+GSGKSTL + + R P G++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLA--- 1324
IDG D+++ LR ++ ++ QD +L ++ N+ + + +VI LA
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL--ANPGMSVEKVIYAAKLAGAH 125
Query: 1325 EIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQ 1384
+ + + + + V E G S GQRQ + D+AT+++D +++VI
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 1385 QTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKL 1440
+ + + TVI +AHR+ TV + D ++V+++GK++E ++LL + S +S L
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767
+G ++VGE+G LSGGQ+QRI +ARA+ +N + IFD SA+D + H+ + + +
Sbjct: 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALD-YESEHVIMRNMHKI 191
Query: 768 LSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNS 812
+TV+ H+L + AD ++VM+ GKI + GK+++L+++ S
Sbjct: 192 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPES 236
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 131/258 (50%), Gaps = 6/258 (2%)
Query: 1175 SVERILQFTNIPSEAPLVIKNS-RPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFP 1233
S++R+ Q + + IKN P G+I+++++ QYN +LK I +
Sbjct: 310 SMDRVFQLIDEDYD----IKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIE 365
Query: 1234 GEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPM 1293
+ + VG +G GKSTLI + R + + G+ILIDG +I LR+++ ++ QD +
Sbjct: 366 KGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNI 425
Query: 1294 LFQGTVRTN-LDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQL 1352
LF TV+ N L +D+E+ E + + + + D V E G S GQ+Q
Sbjct: 426 LFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQR 485
Query: 1353 VCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTVIDNDLV 1412
+ DEAT+++D ++++IQ+ + + T + VAHR+ T+ D +
Sbjct: 486 LSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKI 545
Query: 1413 LVLDEGKVLEYDSPRQLL 1430
+V++ G ++E + R+L+
Sbjct: 546 VVIENGHIVETGTHRELI 563
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 130/554 (23%), Positives = 230/554 (41%), Gaps = 55/554 (9%)
Query: 295 PFLITNFVSFLSGKH----DHSSYHYGLVLA-SVFLFAKT---VESLTQRQWYFGANRIG 346
P LI + + H D +H + + ++F+F +E + Q + +N+I
Sbjct: 34 PLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKIL 93
Query: 347 IRVRSALTVLIYKRSMAIK---FAGPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQV 402
+R L Y A+ +A G +I+ + DVE+ DF L + IWL + +
Sbjct: 94 YDIRKKL----YNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITI 149
Query: 403 FLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLK 462
+AL I++ L AALF F +++ R + +A E ++
Sbjct: 150 IIALSIMFF-LDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQ 208
Query: 463 SMRVLKLLSWE-QEFXXXXXXXXEIERDSLKKY---LYTCSAIAFLFWASPTLVSVITFG 518
+ V+K + E E +LK Y+ +AI + P +V I G
Sbjct: 209 GISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIV--IGVG 266
Query: 519 VCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKED-NQKK 577
+ + +T G + + + +L P+ L + + Q+ S+ R+ + I ED + K
Sbjct: 267 AYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKN 326
Query: 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTDKMKIMXXXXXXXXXXXXXXXX 637
+ + IDI+ + ++ E P +K I
Sbjct: 327 GVGAQPIEIKQGRIDIDHVSFQYNDNE----APILK-----DINLSIEKGETVAFVGMSG 377
Query: 638 XXXXXXXXEIPR----------ISGAAIK------VHGKKAYVPQSSWIQTGTIRENILF 681
IPR I G IK + + V Q + + + T++ENIL
Sbjct: 378 GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL 437
Query: 682 GKDMRQSFYEEVLEGCAL---NQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738
G+ EEV+E + + I G + VGERG+ LSGGQKQR+ +AR +N
Sbjct: 438 GRPTATD--EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 495
Query: 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798
+ I D+ SA+D + + + ++ L L +T L H+L + AD ++V+++G I
Sbjct: 496 PPILILDEATSALDLESES-IIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIV 554
Query: 799 QSGKYEDLIADQNS 812
++G + +LIA Q +
Sbjct: 555 ETGTHRELIAKQGA 568
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 121/242 (50%), Gaps = 7/242 (2%)
Query: 1206 GKIELENLLVQY--NPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSG 1263
G +E +N+ Y P +P + + + + P +VG +GSGKST++ L R+ +P+
Sbjct: 371 GALEFKNVHFAYPARPEVP-IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPAS 429
Query: 1264 GRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL----DPLEQHSDQEIWEVIN 1319
G I +DG DI + LRS++ + Q+P+LF ++ N+ D + +EI V
Sbjct: 430 GTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAE 489
Query: 1320 KCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTAT 1379
+ +R + + V E G S GQ+Q + DEAT+++D
Sbjct: 490 VANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN 549
Query: 1380 DNVIQQTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1439
+ ++Q+ + TV+ +AH + T+ + ++V VLD+GK+ EY +LL + + K
Sbjct: 550 EYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRK 609
Query: 1440 LV 1441
L+
Sbjct: 610 LM 611
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 5/157 (3%)
Query: 660 KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD----IEMWADGDLSVVG 715
K V Q + + +I ENI +G D S E ++ A + I + G +VVG
Sbjct: 450 KIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVG 509
Query: 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLY 775
E+G+ LSGGQKQRI +ARA+ N + + D+ SA+DA +L ++ L L+ +TVL
Sbjct: 510 EKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN-EYLVQEALDRLMDGRTVLV 568
Query: 776 TTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNS 812
H L + A++V V+ GKI + GK+E+L++ N
Sbjct: 569 IAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNG 605
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 947 RAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLA 1006
R L+ T + RL ++ +S+ R ++FFD T + ++NR S+D + + + L+
Sbjct: 113 RVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLS 172
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 124/236 (52%), Gaps = 5/236 (2%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I N+ +Y P P++L I + + IG+VGR+GSGKSTL + + R P G++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLA--- 1324
IDG D+++ LR ++ ++ QD +L ++ N+ + + +VI LA
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL--ANPGMSVEKVIYAAKLAGAH 119
Query: 1325 EIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQ 1384
+ + + + + V E G S GQRQ + DEAT+++D +++VI
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1385 QTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKL 1440
+ + + TVI +A R+ TV + D ++V+++GK++E ++LL + S +S L
Sbjct: 180 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767
+G ++VGE+G LSGGQ+QRI +ARA+ +N + IFD+ SA+D + H+ + + +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKI 185
Query: 768 LSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNS 812
+TV+ +L + AD ++VM+ GKI + GK+++L+++ S
Sbjct: 186 CKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPES 230
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 124/236 (52%), Gaps = 5/236 (2%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
I N+ +Y P P++L I + + IG+VGR+GSGKSTL + + R P G++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 1268 IDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLA--- 1324
IDG D+++ LR ++ ++ QD +L ++ N+ + + +VI LA
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL--ANPGMSVEKVIYAAKLAGAH 125
Query: 1325 EIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQ 1384
+ + + + + V E G S GQRQ + DEAT+++D +++VI
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1385 QTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKL 1440
+ + + TVI +A R+ TV + D ++V+++GK++E ++LL + S +S L
Sbjct: 186 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767
+G ++VGE+G LSGGQ+QRI +ARA+ +N + IFD+ SA+D + H+ + + +
Sbjct: 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKI 191
Query: 768 LSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNS 812
+TV+ +L + AD ++VM+ GKI + GK+++L+++ S
Sbjct: 192 CKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPES 236
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 104/199 (52%), Gaps = 2/199 (1%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
+L+ I+ I G +G GKST+ L R +P+ G I IDG I I L++ RS
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 1284 RLSIIPQDPMLFQGTVRTNLD-PLE-QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAED 1341
++ + QD + GT+R NL LE ++D+++W+V++ V L+ V E
Sbjct: 77 QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGER 136
Query: 1342 GENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETSRCTVITVAH 1401
G S GQRQ + DEATAS+D+ +++++Q+ + T + +AH
Sbjct: 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAH 196
Query: 1402 RIPTVIDNDLVLVLDEGKV 1420
R+ T++D D + +++G++
Sbjct: 197 RLSTIVDADKIYFIEKGQI 215
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
Query: 662 AYVPQSSWIQTGTIRENILFG--KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719
+V Q S I GTIREN+ +G D +VL+ +E D + VGERG+
Sbjct: 79 GFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGV 138
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ 779
+SGGQ+QR+ +ARA N + + D+ +++D+ + + + ++ L L+ +T L H+
Sbjct: 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES-MVQKALDSLMKGRTTLVIAHR 197
Query: 780 LEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
L + AD + ++ G+I SGK+ +L+A
Sbjct: 198 LSTIVDADKIYFIEKGQITGSGKHNELVA 226
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 103 bits (256), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 124/264 (46%), Gaps = 12/264 (4%)
Query: 1168 NVENKMISVERILQFTNIPSEAPLVIKNSRPSPEWPSSGKIELENLLVQYNPTLPMVLKG 1227
++EN ++ + ++P PL + G+IE EN+ Y +
Sbjct: 24 DMENMFDLLKEETEVKDLPGAGPLRFQK----------GRIEFENVHFSYADGRETLQDV 73
Query: 1228 ITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSI 1287
PG+ + +VG +G+GKST+++ LFR + S G I IDG DIS + LRS + +
Sbjct: 74 SFTVMPGQT-LALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGV 132
Query: 1288 IPQDPMLFQGTVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWS 1346
+PQD +LF T+ N+ + E+ + + + V E G S
Sbjct: 133 VPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLS 192
Query: 1347 VGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETSRCTVITVAHRIPTV 1406
G++Q V DEAT+++DT+ + IQ ++ + + T I VAHR+ TV
Sbjct: 193 GGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTV 252
Query: 1407 IDNDLVLVLDEGKVLEYDSPRQLL 1430
++ D +LV+ +G ++E LL
Sbjct: 253 VNADQILVIKDGCIVERGRHEALL 276
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 646 EIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIE 704
+I +++ A+++ H VPQ + + TI +NI +G+ E + ++ I
Sbjct: 117 DISQVTQASLRSH--IGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIM 174
Query: 705 MWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL 764
+ +G + VGERG+ LSGG+KQR+ +AR + + + D+ SA+D + + L
Sbjct: 175 AFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDT-SNERAIQASL 233
Query: 765 MGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808
+ + +T + H+L + AD +LV+KDG I + G++E L++
Sbjct: 234 AKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLS 277
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 115/230 (50%), Gaps = 5/230 (2%)
Query: 1208 IELENLLVQY-NPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
IE ++ Y T LK I P +VG TGSGKST+ + L+R + G I
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEG-DI 76
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL--DPLEQHSDQEIWEVINKCHLA 1324
I G +++ +RS + I+PQD +LF T++ N+ L+ +D+E+ + L
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDA-TDEEVIKATKSAQLY 135
Query: 1325 EIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQ 1384
+ + + D V G S G+RQ + DEAT+S+D+ T+ + Q
Sbjct: 136 DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 1385 QTIREETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNS 1434
+ + + T+I +AHR+ T+ + +++L++GK++E + + LL+ N
Sbjct: 196 KAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNG 245
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 87/147 (59%), Gaps = 6/147 (4%)
Query: 664 VPQSSWIQTGTIRENILFGKDMRQSFYEEVLEG---CALNQDIEMWADGDLSVVGERGIN 720
VPQ + + TI+ NIL+GK + EEV++ L IE ++VG +G+
Sbjct: 98 VPQDTILFNETIKYNILYGK--LDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMK 155
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGG++QRI +AR + + + IFD+ S++D+ T +LF++ + L +T++ H+L
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT-EYLFQKAVEDLRKNRTLIIIAHRL 214
Query: 781 EFLDAADLVLVMKDGKIEQSGKYEDLI 807
+ +A+ ++++ GKI + G ++DL+
Sbjct: 215 STISSAESIILLNKGKIVEKGTHKDLL 241
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 113/233 (48%), Gaps = 9/233 (3%)
Query: 1206 GKIELENLLVQYNPTLP--MVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1262
G ++ +++ Y P P VL+G+T T +PG K +VG GSGKST+ L + +P+
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPG-KVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 1263 GGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL--DPLEQHSDQEIWEVINK 1320
GG++L+DG + L ++++ + Q+P+LF + R N+ + +EI V +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 1321 CHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATD 1380
+ + + D V E G S GQRQ V D+AT+++D
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQ 192
Query: 1381 NVIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLE 1431
+Q+ + E E + TV+ + H++ +L L EG V E + QL+E
Sbjct: 193 LRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 11/158 (6%)
Query: 657 VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEV----LEGCALNQDIEMWADGDLS 712
+H + A V Q + + RENI +G R EE+ +E A + I + G +
Sbjct: 91 LHTQVAAVGQEPLLFGRSFRENIAYGLT-RTPTMEEITAVAMESGA-HDFISGFPQGYDT 148
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLM---GLLS 769
VGE G LSGGQ+Q + LARA+ + I D SA+DA G L Q L+ +
Sbjct: 149 EVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDA--GNQLRVQRLLYESPEWA 206
Query: 770 QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLI 807
+TVL THQL + A +L +K+G + + G + L+
Sbjct: 207 SRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLM 244
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 112/233 (48%), Gaps = 9/233 (3%)
Query: 1206 GKIELENLLVQYNPTLP--MVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1262
G ++ +++ Y P P VL+G+T T +PG K +VG GSGKST+ L + +P+
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPG-KVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 1263 GGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL--DPLEQHSDQEIWEVINK 1320
GG++L+DG + L ++++ + Q+P+LF + R N+ + +EI V +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 1321 CHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATD 1380
+ + + D V E G +VGQRQ V D AT+++D
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 1381 NVIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLE 1431
+Q+ + E E + TV+ + ++ +L L EG V E + QL+E
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 11/158 (6%)
Query: 657 VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEV----LEGCALNQDIEMWADGDLS 712
+H + A V Q + + RENI +G R EE+ +E A + I + G +
Sbjct: 91 LHTQVAAVGQEPLLFGRSFRENIAYGLT-RTPTMEEITAVAMESGA-HDFISGFPQGYDT 148
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLM---GLLS 769
VGE G L+ GQ+Q + LARA+ + I D+ SA+DA G L Q L+ +
Sbjct: 149 EVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDA--GNQLRVQRLLYESPEWA 206
Query: 770 QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLI 807
+TVL T QL + A +L +K+G + + G + L+
Sbjct: 207 SRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLM 244
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 80.5 bits (197), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 111/233 (47%), Gaps = 9/233 (3%)
Query: 1206 GKIELENLLVQYNPTLP--MVLKGITCT-FPGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1262
G ++ +++ Y P P VL+G+T T +PG K +VG GSGKST+ L + +P+
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPG-KVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 1263 GGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL--DPLEQHSDQEIWEVINK 1320
GG++L+DG + L ++++ + Q+P+LF + R N+ + +EI V +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 1321 CHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATD 1380
+ + + D V E G S GQRQ V D AT+++D
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 1381 NVIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLE 1431
+Q+ + E E + TV+ + ++ +L L EG V E + QL+E
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 11/158 (6%)
Query: 657 VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEV----LEGCALNQDIEMWADGDLS 712
+H + A V Q + + RENI +G R EE+ +E A + I + G +
Sbjct: 91 LHTQVAAVGQEPLLFGRSFRENIAYGLT-RTPTMEEITAVAMESGA-HDFISGFPQGYDT 148
Query: 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLM---GLLS 769
VGE G LSGGQ+Q + LARA+ + I D+ SA+DA G L Q L+ +
Sbjct: 149 EVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDA--GNQLRVQRLLYESPEWA 206
Query: 770 QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLI 807
+TVL T QL + A +L +K+G + + G + L+
Sbjct: 207 SRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLM 244
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 77.8 bits (190), Expect = 4e-14, Method: Composition-based stats.
Identities = 62/233 (26%), Positives = 114/233 (48%), Gaps = 9/233 (3%)
Query: 1206 GKIELENLLVQYNPTLP--MVLKGITCTF-PGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1262
G ++ +++ Y P P +VL+G+T T PGE +VG GSGKST+ L + +P+
Sbjct: 13 GLVQFQDVSFAY-PNRPDVLVLQGLTFTLRPGEVT-ALVGPNGSGKSTVAALLQNLYQPT 70
Query: 1263 GGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNL--DPLEQHSDQEIWEVINK 1320
GG++L+DG + + L +++ + Q+P +F +++ N+ ++ + +EI K
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 1321 CHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATD 1380
+ + D V E G S GQRQ V D+AT+++D +
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 1381 NVIQQTIREETSRC--TVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLE 1431
++Q + E R +V+ + + V D +L L+ G + E + +QL+E
Sbjct: 191 LQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME 243
Score = 59.3 bits (142), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 657 VHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGC---ALNQDIEMWADGDLSV 713
+H + A V Q + +++ENI +G + + EE+ + I G +
Sbjct: 89 LHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTM-EEITAAAVKSGAHSFISGLPQGYDTE 147
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--K 771
V E G LSGGQ+Q + LARA+ V I DD SA+DA++ + +Q L + +
Sbjct: 148 VDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV-EQLLYESPERYSR 206
Query: 772 TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLI 807
+VL T L ++ AD +L ++ G I + G ++ L+
Sbjct: 207 SVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLM 242
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 64.3 bits (155), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHL--FKQCLMGLLSQKTVLYTTH 778
LSGGQ+QR+ LARA+ V +FD+PF+A+D L F + + + +V T
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD 205
Query: 779 QLEFLDAADLVLVMKDGKIEQSGKYEDL 806
Q E L+ AD VLV+ +G +EQ G E++
Sbjct: 206 QEEALEVADRVLVLHEGNVEQFGTPEEV 233
Score = 47.0 bits (110), Expect = 8e-05, Method: Composition-based stats.
Identities = 55/228 (24%), Positives = 104/228 (45%), Gaps = 19/228 (8%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1284
++G++ + +G++G +GSGK+T+++ + + P+ G + I G ++ + Q +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQ--KRN 88
Query: 1285 LSIIPQDPMLFQG-TVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRL--LDAPVAE 1340
+ ++ Q+ LFQ TV N+ L + + K + VR+ R L++
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFGLREKR-------VPKDEMDARVRELLRFMRLESYANR 141
Query: 1341 DGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIRE--ETSRCTVIT 1398
S GQ+Q V DE A+IDT ++ +R+ + T +
Sbjct: 142 FPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF 201
Query: 1399 VAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1445
V H ++ D VLVL EG V ++ +P ++ E + F VA F+
Sbjct: 202 VTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF---VASFI 246
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 13/137 (9%)
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733
+++N+ FG M++ + + A + IE D + LSGG++QR+ LAR
Sbjct: 88 NVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-------RNPLTLSGGEQQRVALAR 140
Query: 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTTH-QLEFLDAADLV 789
A+ +N + + D+P SA+D T + + ++ +L +K TVL+ TH Q E AD +
Sbjct: 141 ALVTNPKILLLDEPLSALDPRTQEN--AREMLSVLHKKNKLTVLHITHDQTEARIMADRI 198
Query: 790 LVMKDGKIEQSGKYEDL 806
V+ DGK+ Q GK E++
Sbjct: 199 AVVMDGKLIQVGKPEEI 215
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 92/198 (46%), Gaps = 17/198 (8%)
Query: 1240 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF-QGT 1298
++G TG+GK+ ++ + P GRIL+DG D++ L + ++ + Q+ LF
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMN 88
Query: 1299 VRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLD-APVAEDGENWSVGQRQLVCXX 1356
V+ NL+ + ++ V++ +I + LLD P+ G G++Q V
Sbjct: 89 VKKNLEFGMRMKKIKDPKRVLDTARDLKI----EHLLDRNPLTLSG-----GEQQRVALA 139
Query: 1357 XXXXXXXXXXXXDEATASIDTATDNVIQQ--TIREETSRCTVITVAH-RIPTVIDNDLVL 1413
DE +++D T ++ ++ + ++ TV+ + H + I D +
Sbjct: 140 RALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIA 199
Query: 1414 VLDEGKVLEYDSPRQLLE 1431
V+ +GK+++ P ++ E
Sbjct: 200 VVMDGKLIQVGKPEEIFE 217
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 63.5 bits (153), Expect = 8e-10, Method: Composition-based stats.
Identities = 62/221 (28%), Positives = 94/221 (42%), Gaps = 23/221 (10%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG--VDISMIGLQDLR 1282
LKGI + ++G G GKSTL Q +++PS GRIL D +D S G+ LR
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 1283 SRLSIIPQDP--MLFQGTVRTNLD----PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDA 1336
+ I+ QDP LF +V ++ ++ D+ V N I + L D
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGI----EHLKDK 139
Query: 1337 PVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETSR--C 1394
P S GQ++ V DE TA +D + I + + E
Sbjct: 140 PT----HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI 195
Query: 1395 TVITVAHRI---PTVIDNDLVLVLDEGKVLEYDSPRQLLED 1432
T+I H I P DN V V+ EG+V+ +P+++ +
Sbjct: 196 TIIIATHDIDIVPLYCDN--VFVMKEGRVILQGNPKEVFAE 234
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 56/104 (53%), Gaps = 12/104 (11%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFK-----QCLMGLLSQKTVLY 775
LS GQK+R+ +A + V I D+P + +D + + K Q +G+ T++
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI----TIII 199
Query: 776 TTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818
TH ++ + D V VMK+G++ G +++ A++ E++R++
Sbjct: 200 ATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK--EVIRKV 241
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTT 777
+NLSGGQKQR+ +A + ++ D+P S +D + +F Q L L ++ K ++ T
Sbjct: 139 LNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIF-QVLESLKNEGKGIILVT 197
Query: 778 HQLEFLDAADLVLVMKDGKIEQSGKYEDLI 807
H+LE+LD D +L + +G I+ G +E+ +
Sbjct: 198 HELEYLDDMDFILHISNGTIDFCGSWEEFV 227
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 93/231 (40%), Gaps = 41/231 (17%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+IEL ++ +YN VLK + F K VVG+ GSGK+TL++ L ++ + G I
Sbjct: 11 RIELNSVSFRYNGD--YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEI 67
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLA-- 1324
+DG P DP L +R N+ + Q+ +I + +A
Sbjct: 68 FLDGS-----------------PADPFL----LRKNVGYVFQNPSSQIIGATVEEDVAFS 106
Query: 1325 -EIVRQDQ-----RL--------LDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDE 1370
EI+ D+ R+ L A D N S GQ+Q + DE
Sbjct: 107 LEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDE 166
Query: 1371 ATASIDTATDNVIQQTIRE-ETSRCTVITVAHRIPTVIDNDLVLVLDEGKV 1420
+ +D + I Q + + +I V H + + D D +L + G +
Sbjct: 167 PVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTI 217
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS 769
D G+ ++LSGGQ+QR+ +ARA+ DV +FD+P SA+D + + +M L+
Sbjct: 143 DERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR--IMQQLA 200
Query: 770 Q--KTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ-MKAHRKSL 825
+ KT++ TH++ F + V+ + GKIE+ G E + + S ++Q +K K L
Sbjct: 201 EEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSLKKL 260
Query: 826 DQ 827
+
Sbjct: 261 EH 262
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 57.8 bits (138), Expect = 5e-08, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTT 777
LSGG++QR+ LARA+ + + D+P SAVD T L ++ + + ++ +L+ T
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEE--LRFVQREFDVPILHVT 184
Query: 778 HQL-EFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKA 820
H L E AD V VM +G+I + GK ++L + +N E+ + A
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSA 228
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 53/218 (24%), Positives = 92/218 (42%), Gaps = 32/218 (14%)
Query: 1240 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLFQGT- 1298
++G TG+GKS ++ + +V+P G + ++G DI+ L R + +PQD LF
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGFVPQDYALFPHLS 86
Query: 1299 --------VRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQR 1350
+R +E+ E + HL + R+ RL S G+R
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD--RKPARL------------SGGER 132
Query: 1351 QLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIR--EETSRCTVITVAHR-IPTVI 1407
Q V DE +++D T V+ + +R + ++ V H I +
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAM 192
Query: 1408 DNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1445
D V V+ G+++E ++L S+ + VAEFL
Sbjct: 193 LADEVAVMLNGRIVEKGKLKELF----SAKNGEVAEFL 226
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 110/237 (46%), Gaps = 26/237 (10%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL--- 1281
L ++ P + GV+G +G+GKSTLI+ + + P+ G +L+DG +++ + +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 1282 RSRLSIIPQD-PMLFQGTVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVA 1339
R ++ +I Q +L TV N+ PLE ++ E+ R+ LL
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLE----------LDNTPKDEVKRRVTELLSLVGL 130
Query: 1340 EDGE-----NWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETSR- 1393
D N S GQ+Q V DEAT+++D AT I + +++ R
Sbjct: 131 GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL 190
Query: 1394 -CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRT 1448
T++ + H + V D V V+ G+++E D+ ++ S + L +F++ T
Sbjct: 191 GLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF---SHPKTPLAQKFIQST 244
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 101/215 (46%), Gaps = 27/215 (12%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYT 776
NLSGGQKQR+ +ARA+ SN V + D+ SA+D T + + L+ ++++ T+L
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE--LLKDINRRLGLTILLI 197
Query: 777 THQLEFLD-AADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDK 835
TH+++ + D V V+ +G++ + ++ + + L ++ LD QE
Sbjct: 198 THEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQE-- 255
Query: 836 CLSRVPCQMSQITEERFAR--PISCGEFSGRSQDED--TELGRVKWTVYSAFIT--LVYK 889
++ E F P+ EF+G+S D +E R ++ V + I+ + Y
Sbjct: 256 ----------RLQAEPFTDCVPMLRLEFTGQSVDAPLLSETAR-RFNVNNNIISAQMDYA 304
Query: 890 GALVPVILLCQVLFQALQMGSNYWIAWATDEKRKV 924
G + I+L + Q + IAW + KV
Sbjct: 305 GGVKFGIMLTE--MHGTQQDTQAAIAWLQEHHVKV 337
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 57.0 bits (136), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH 778
LSGGQ+QR+ +ARA+ +N + + D+P A+D+ TG + Q L L + KTV+ TH
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKI-XQLLKKLNEEDGKTVVVVTH 204
Query: 779 QLEFLDAADLVLVMKDGKIEQSGK 802
+ + ++ +KDG++E+ K
Sbjct: 205 DINVARFGERIIYLKDGEVEREEK 228
Score = 38.9 bits (89), Expect = 0.023, Method: Composition-based stats.
Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 23/229 (10%)
Query: 1208 IELENLLVQYNPTLPMV--LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
I+L+N+ Y ++ LK + + + + G +GSGKST + + + +P+ G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPM--LFQGTVRTNLDPLEQHSDQEIWEVINKCHL 1323
+ ID + + L D L+ I +D + +FQ + NL PL + +I K
Sbjct: 62 VYIDNIKTN--DLDD--DELTKIRRDKIGFVFQ---QFNLIPLLTALENVELPLIFKYRG 114
Query: 1324 AEIVRQDQR-----LLDAPVAEDGEN-----WSVGQRQLVCXXXXXXXXXXXXXXDEATA 1373
A + ++ L A + E N S GQ+Q V DE T
Sbjct: 115 AXSGEERRKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTG 174
Query: 1374 SIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEGKV 1420
++D+ T I Q +++ E TV+ V H I + ++ L +G+V
Sbjct: 175 ALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 56.6 bits (135), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ---KTVLYTT 777
LSGGQ+QR+ +ARA+ +N + + D P A+D+ TG + + L+ L++ KTV+ T
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQ--LLKKLNEEDGKTVVVVT 203
Query: 778 HQLEFLDAADLVLVMKDGKIEQSGK 802
H + + ++ +KDG++E+ K
Sbjct: 204 HDINVARFGERIIYLKDGEVEREEK 228
Score = 39.7 bits (91), Expect = 0.013, Method: Composition-based stats.
Identities = 55/229 (24%), Positives = 102/229 (44%), Gaps = 23/229 (10%)
Query: 1208 IELENLLVQYNPTLPMV--LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGR 1265
I+L+N+ Y ++ LK + + + ++G +GSGKST++ + + +P+ G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1266 ILIDGVDISMIGLQDLRSRLSIIPQDPM--LFQGTVRTNLDPLEQHSDQEIWEVINKCH- 1322
+ ID + + L D L+ I +D + +FQ + NL PL + +I K
Sbjct: 62 VYIDNIKTN--DLDD--DELTKIRRDKIGFVFQ---QFNLIPLLTALENVELPLIFKYRG 114
Query: 1323 -LAEIVRQDQRLLDAPVAEDGENW--------SVGQRQLVCXXXXXXXXXXXXXXDEATA 1373
++ R+ + L +AE E + S GQ+Q V D+ T
Sbjct: 115 AMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTG 174
Query: 1374 SIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVIDNDLVLVLDEGKV 1420
++D+ T I Q +++ E TV+ V H I + ++ L +G+V
Sbjct: 175 ALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 12/138 (8%)
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD--GDLSVVGERGINLSGGQKQRIQL 731
T+ +NI F +R+ +E+ +Q + A+ G ++ + LSGGQ+QR+ L
Sbjct: 97 TVYDNIAFPLKLRKVPRQEI------DQRVREVAELLGLTELLNRKPRELSGGQRQRVAL 150
Query: 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH-QLEFLDAADL 788
RA+ V++ D+P S +DA + + L L Q T +Y TH Q+E + D
Sbjct: 151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE-LKKLQRQLGVTTIYVTHDQVEAMTMGDR 209
Query: 789 VLVMKDGKIEQSGKYEDL 806
+ VM G ++Q G +++
Sbjct: 210 IAVMNRGVLQQVGSPDEV 227
Score = 39.7 bits (91), Expect = 0.013, Method: Composition-based stats.
Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 39/226 (17%)
Query: 1240 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQD---PMLFQ 1296
++G +G GK+T ++ + + EPS G+I I ++ D + + P+D M+FQ
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVA-----DPEKGIFVPPKDRDIAMVFQ 88
Query: 1297 G-------TVRTNLD-PLE------QHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDG 1342
TV N+ PL+ Q DQ + EV L E++ + R L
Sbjct: 89 SYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPREL-------- 140
Query: 1343 ENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETSR--CTVITVA 1400
S GQRQ V DE +++D ++ +++ + T I V
Sbjct: 141 ---SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVT 197
Query: 1401 H-RIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1445
H ++ + D + V++ G + + SP ++ + +++F VA F+
Sbjct: 198 HDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF---VAGFI 240
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 110/237 (46%), Gaps = 26/237 (10%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL--- 1281
L ++ P + GV+G +G+GKSTLI+ + + P+ G +L+DG +++ + +L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1282 RSRLSIIPQD-PMLFQGTVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVA 1339
R ++ +I Q +L TV N+ PLE ++ E+ R+ LL
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLE----------LDNTPKDEVKRRVTELLSLVGL 153
Query: 1340 EDGE-----NWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETSR- 1393
D N S GQ+Q V D+AT+++D AT I + +++ R
Sbjct: 154 GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL 213
Query: 1394 -CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRT 1448
T++ + H + V D V V+ G+++E D+ ++ S + L +F++ T
Sbjct: 214 GLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF---SHPKTPLAQKFIQST 267
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 100/215 (46%), Gaps = 27/215 (12%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYT 776
NLSGGQKQR+ +ARA+ SN V + D SA+D T + + L+ ++++ T+L
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE--LLKDINRRLGLTILLI 220
Query: 777 THQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDK 835
TH+++ + D V V+ +G++ + ++ + + L ++ LD QE
Sbjct: 221 THEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQE-- 278
Query: 836 CLSRVPCQMSQITEERFAR--PISCGEFSGRSQDED--TELGRVKWTVYSAFIT--LVYK 889
++ E F P+ EF+G+S D +E R ++ V + I+ + Y
Sbjct: 279 ----------RLQAEPFTDCVPMLRLEFTGQSVDAPLLSETAR-RFNVNNNIISAQMDYA 327
Query: 890 GALVPVILLCQVLFQALQMGSNYWIAWATDEKRKV 924
G + I+L + Q + IAW + KV
Sbjct: 328 GGVKFGIMLTE--MHGTQQDTQAAIAWLQEHHVKV 360
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH 778
LSGGQ+QR+ +ARA+ +N + + D P A+D+ TG + Q L L + KTV+ TH
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIM-QLLKKLNEEDGKTVVVVTH 204
Query: 779 QLEFLDAADLVLVMKDGKIEQSGK 802
+ + ++ +KDG++E+ K
Sbjct: 205 DINVARFGERIIYLKDGEVEREEK 228
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 93/210 (44%), Gaps = 21/210 (10%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1284
LK + + + ++G +GSGKST++ + + +P+ G + ID +I L D
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID--NIKTNDLDD--DE 76
Query: 1285 LSIIPQDPM--LFQGTVRTNLDPLEQHSDQEIWEVINKCH--LAEIVRQDQRLLDAPVAE 1340
L+ I +D + +FQ + NL PL + +I K ++ R+ + L +AE
Sbjct: 77 LTKIRRDKIGFVFQ---QFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE 133
Query: 1341 DGENW--------SVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIRE--E 1390
E + S GQ+Q V D+ T ++D+ T I Q +++ E
Sbjct: 134 LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNE 193
Query: 1391 TSRCTVITVAHRIPTVIDNDLVLVLDEGKV 1420
TV+ V H I + ++ L +G+V
Sbjct: 194 EDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTT 777
LSGGQ+QR+ +ARA+ DV + D+P S +DA + + + L QK T +Y T
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAM--RAEIKKLQQKLKVTTIYVT 199
Query: 778 H-QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
H Q+E + D + VM G++ Q G ++ NS V
Sbjct: 200 HDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 238
Score = 37.0 bits (84), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 99/211 (46%), Gaps = 15/211 (7%)
Query: 1240 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF-QGT 1298
++G +G GK+T ++ + + EP+ GRI D++ + +D +S++ Q ++ T
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD--RNISMVFQSYAVWPHMT 99
Query: 1299 VRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXX 1357
V N+ PL+ + E+ + A + Q + LL+ A+ S GQRQ V
Sbjct: 100 VYENIAFPLKIKKFPK-DEIDKRVRWAAELLQIEELLNRYPAQ----LSGGQRQRVAVAR 154
Query: 1358 XXXXXXXXXXXDEATASIDTATDNVIQQTIR--EETSRCTVITVAH-RIPTVIDNDLVLV 1414
DE +++D ++ I+ ++ + T I V H ++ + D + V
Sbjct: 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAV 214
Query: 1415 LDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1445
++ G++L+ SP ++ +S F VA F+
Sbjct: 215 MNRGQLLQIGSPTEVYLRPNSVF---VATFI 242
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTT 777
LSGGQ+QR+ +ARA+ DV + D+P S +DA + + + L QK T +Y T
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAM--RAEIKKLQQKLKVTTIYVT 200
Query: 778 H-QLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815
H Q+E + D + VM G++ Q G ++ NS V
Sbjct: 201 HDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 239
Score = 37.0 bits (84), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 99/211 (46%), Gaps = 15/211 (7%)
Query: 1240 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF-QGT 1298
++G +G GK+T ++ + + EP+ GRI D++ + +D +S++ Q ++ T
Sbjct: 43 LLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD--RNISMVFQSYAVWPHMT 100
Query: 1299 VRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXX 1357
V N+ PL+ + E+ + A + Q + LL+ A+ S GQRQ V
Sbjct: 101 VYENIAFPLKIKKFPK-DEIDKRVRWAAELLQIEELLNRYPAQ----LSGGQRQRVAVAR 155
Query: 1358 XXXXXXXXXXXDEATASIDTATDNVIQQTIR--EETSRCTVITVAH-RIPTVIDNDLVLV 1414
DE +++D ++ I+ ++ + T I V H ++ + D + V
Sbjct: 156 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAV 215
Query: 1415 LDEGKVLEYDSPRQLLEDNSSSFSKLVAEFL 1445
++ G++L+ SP ++ +S F VA F+
Sbjct: 216 MNRGQLLQIGSPTEVYLRPNSVF---VATFI 243
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 53.9 bits (128), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTT 777
+LSGGQ QR+ +ARA+ + +FD+P SA+D + +M L+ + T++ T
Sbjct: 138 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS--VMKQLANEGMTMVVVT 195
Query: 778 HQLEFL-DAADLVLVMKDGKIEQSGKYEDL 806
H++ F + D VL M G I + GK EDL
Sbjct: 196 HEMGFAREVGDRVLFMDGGYIIEEGKPEDL 225
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 54/221 (24%), Positives = 97/221 (43%), Gaps = 24/221 (10%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM--IGLQDL 1281
VLKGI + + V+G +GSGKST ++ L + + G I+IDG+++ L +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 1282 RSRLSIIPQDPMLF-QGTVRTN--LDPLE------QHSDQEIWEVINKCHLAEIVRQDQR 1332
R + ++ Q LF TV N L P++ + ++ + E+++K L +
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD------- 130
Query: 1333 LLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETS 1392
A D + S GQ Q V DE T+++D + +++ +
Sbjct: 131 --KAHAYPD--SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 186
Query: 1393 R-CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431
T++ V H + + D VL +D G ++E P L +
Sbjct: 187 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 227
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 53.9 bits (128), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTT 777
+LSGGQ QR+ +ARA+ + +FD+P SA+D + +M L+ + T++ T
Sbjct: 159 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS--VMKQLANEGMTMVVVT 216
Query: 778 HQLEFL-DAADLVLVMKDGKIEQSGKYEDL 806
H++ F + D VL M G I + GK EDL
Sbjct: 217 HEMGFAREVGDRVLFMDGGYIIEEGKPEDL 246
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 54/221 (24%), Positives = 97/221 (43%), Gaps = 24/221 (10%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISM--IGLQDL 1281
VLKGI + + V+G +GSGKST ++ L + + G I+IDG+++ L +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 1282 RSRLSIIPQDPMLF-QGTVRTN--LDPLE------QHSDQEIWEVINKCHLAEIVRQDQR 1332
R + ++ Q LF TV N L P++ + ++ + E+++K L +
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD------- 151
Query: 1333 LLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETS 1392
A D + S GQ Q V DE T+++D + +++ +
Sbjct: 152 --KAHAYPD--SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207
Query: 1393 R-CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLE 1431
T++ V H + + D VL +D G ++E P L +
Sbjct: 208 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 108/237 (45%), Gaps = 26/237 (10%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL--- 1281
L ++ P + GV+G +G+GKSTLI+ + + P+ G +L+DG +++ + +L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1282 RSRLSIIPQD-PMLFQGTVRTNLD-PLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAPVA 1339
R ++ I Q +L TV N+ PLE ++ E+ R+ LL
Sbjct: 104 RRQIGXIFQHFNLLSSRTVFGNVALPLE----------LDNTPKDEVKRRVTELLSLVGL 153
Query: 1340 EDGE-----NWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETSR- 1393
D N S GQ+Q V D+AT+++D AT I + +++ R
Sbjct: 154 GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL 213
Query: 1394 -CTVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRT 1448
T++ + H V D V V+ G+++E D+ ++ S + L +F++ T
Sbjct: 214 GLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVF---SHPKTPLAQKFIQST 267
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 7/85 (8%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYT 776
NLSGGQKQR+ +ARA+ SN V + D SA+D T + + L+ ++++ T+L
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE--LLKDINRRLGLTILLI 220
Query: 777 THQLEFLDA-ADLVLVMKDGK-IEQ 799
TH+ + + D V V+ +G+ IEQ
Sbjct: 221 THEXDVVKRICDCVAVISNGELIEQ 245
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 10/92 (10%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH---TGTHLFK--QCLMGLLSQKTVLY 775
LSGGQ+QR+ LARA+ + + + D+PFS +DA + L K Q +G+ T+L
Sbjct: 141 LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV----TLLV 196
Query: 776 TTHQ-LEFLDAADLVLVMKDGKIEQSGKYEDL 806
+H + AD V V+ GK+ Q GK EDL
Sbjct: 197 VSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 100/232 (43%), Gaps = 16/232 (6%)
Query: 1223 MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1282
+ L + ++ G++G +G+GK+T ++ + + PS G + D ++ G
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG----- 73
Query: 1283 SRLSIIPQD---PMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAP- 1337
+L + P+D M+FQ + NL E + ++K + + V + ++LD
Sbjct: 74 -KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 1338 -VAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETSR--C 1394
+ S GQ+Q V DE +++D + + ++E SR
Sbjct: 133 VLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV 192
Query: 1395 TVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSS-SFSKLVAEF 1444
T++ V+H + D V VL +GK+++ P L ++ S + L+ E
Sbjct: 193 TLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEI 244
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC--LMGLLSQKTVLYTTH 778
LSGGQ+QR+ + R + + V++ D+P S +DA + + L L +T++Y TH
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG-RTMIYVTH 192
Query: 779 -QLEFLDAADLVLVMKDGKIEQSGK 802
Q+E + AD ++V+ G++ Q GK
Sbjct: 193 DQVEAMTLADKIVVLDAGRVAQVGK 217
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC--LMGLLSQKTVLYTTH 778
LSGGQ+QR+ + R + + V++ D+P S +DA + + L L +T++Y TH
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG-RTMIYVTH 192
Query: 779 -QLEFLDAADLVLVMKDGKIEQSGK 802
Q+E + AD ++V+ G++ Q GK
Sbjct: 193 DQVEAMTLADKIVVLDAGRVAQVGK 217
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQC--LMGLLSQKTVLYTTH 778
LSGGQ+QR+ + R + + V++ D P S +DA + + L L +T++Y TH
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLG-RTMIYVTH 192
Query: 779 -QLEFLDAADLVLVMKDGKIEQSGK 802
Q+E + AD ++V+ G++ Q GK
Sbjct: 193 DQVEAMTLADKIVVLDAGRVAQVGK 217
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733
T+ ENI F R+ +EV E + ++ D +++ + LSGGQ+QR+ LAR
Sbjct: 91 TVFENIAFPLRARRISKDEV-EKRVVEIARKLLID---NLLDRKPTQLSGGQQQRVALAR 146
Query: 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK---TVLYTTH-QLEFLDAADLV 789
A+ V +FD+P S +DA+ + + + L Q+ T +Y TH Q E + A +
Sbjct: 147 ALVKQPKVLLFDEPLSNLDAN--LRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRI 204
Query: 790 LVMKDGKIEQSGKYEDL 806
V GK+ Q G +++
Sbjct: 205 AVFNQGKLVQYGTPDEV 221
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 99/228 (43%), Gaps = 20/228 (8%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSRLSIIPQDPMLF-Q 1296
+ ++G +G GK+T + L + +P+ G I D V ++ I + + ++ Q+ L+
Sbjct: 32 VALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGMVFQNYALYPH 89
Query: 1297 GTVRTNLD-PLEQH--SDQEIWEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLV 1353
TV N+ PL S E+ + + EI R + L+D + S GQ+Q V
Sbjct: 90 MTVFENIAFPLRARRISKDEVEK-----RVVEIAR--KLLIDNLLDRKPTQLSGGQQQRV 142
Query: 1354 CXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIR---EETSRCTVITVAHRIPTVIDND 1410
DE +++D +++ I+ +E +V + +
Sbjct: 143 ALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMAS 202
Query: 1411 LVLVLDEGKVLEYDSPRQLLEDNSSSFSKLVAEFLRRTSKSNRNRDLS 1458
+ V ++GK+++Y +P ++ + + F VA F+ +N RD S
Sbjct: 203 RIAVFNQGKLVQYGTPDEVYDSPKNMF---VASFI-GNPPTNFLRDFS 246
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 6/135 (4%)
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733
T+ +NI F ++R++ EE+ + +++ D ++ LSGGQ+QR+ +AR
Sbjct: 91 TVYKNIAFPLELRKAPREEIDKKV---REVAKMLHID-KLLNRYPWQLSGGQQQRVAIAR 146
Query: 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQC--LMGLLSQKTVLYTTHQLEFLDAADLVLV 791
A+ +V + D+P S +DA + + L L TV T Q E L AD + V
Sbjct: 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAV 206
Query: 792 MKDGKIEQSGKYEDL 806
+++G+I Q G +++
Sbjct: 207 IREGEILQVGTPDEV 221
Score = 46.6 bits (109), Expect = 9e-05, Method: Composition-based stats.
Identities = 55/238 (23%), Positives = 107/238 (44%), Gaps = 34/238 (14%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+I+LEN++ ++ L I + + ++G +GSGKSTL+ + + +P+ G+I
Sbjct: 3 EIKLENIVKKFGNF--TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQDPMLF-QGTVRTNLD-PLE------QHSDQEIWEVI 1318
D D++ + +D + ++ Q+ L+ TV N+ PLE + D+++ EV
Sbjct: 61 YFDEKDVTELPPKD--RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVA 118
Query: 1319 NKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTA 1378
H+ D+ L P G GQ+Q V DE +++D
Sbjct: 119 KMLHI------DKLLNRYPWQLSG-----GQQQRVAIARALVKEPEVLLLDEPLSNLDA- 166
Query: 1379 TDNVIQQTIREETSR------CTVITVAH-RIPTVIDNDLVLVLDEGKVLEYDSPRQL 1429
+++ +R E R T + V H + + D + V+ EG++L+ +P ++
Sbjct: 167 ---LLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 10/92 (10%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH---TGTHLFK--QCLMGLLSQKTVLY 775
LSG Q+QR+ LARA+ + + + D+PFS +DA + L K Q +G+ T+L
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV----TLLV 196
Query: 776 TTHQ-LEFLDAADLVLVMKDGKIEQSGKYEDL 806
+H + AD V V+ GK+ Q GK EDL
Sbjct: 197 VSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 16/232 (6%)
Query: 1223 MVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLR 1282
+ L + ++ G++G +G+GK+T ++ + + PS G + D ++ G
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG----- 73
Query: 1283 SRLSIIPQD---PMLFQG-TVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLLDAP- 1337
+L + P+D M+FQ + NL E + ++K + + V + ++LD
Sbjct: 74 -KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 1338 -VAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETSR--C 1394
+ S Q+Q V DE +++D + + ++E SR
Sbjct: 133 VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV 192
Query: 1395 TVITVAHRIPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSS-SFSKLVAEF 1444
T++ V+H + D V VL +GK+++ P L ++ S + L+ E
Sbjct: 193 TLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEI 244
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 12/138 (8%)
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD--GDLSVVGERGINLSGGQKQRIQL 731
T+ +NI F +R+ +E+ ++ + A+ G ++ + LSGGQ+QR+ L
Sbjct: 100 TVYDNIAFPLKLRKVPKQEI------DKRVREVAEXLGLTELLNRKPRELSGGQRQRVAL 153
Query: 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ--KTVLYTTH-QLEFLDAADL 788
RA+ V++ D+P S +DA + L L Q T +Y TH Q+E D
Sbjct: 154 GRAIIRRPKVFLXDEPLSNLDAKLRVKXRAE-LKKLQRQLGVTTIYVTHDQVEAXTXGDR 212
Query: 789 VLVMKDGKIEQSGKYEDL 806
+ V G+++Q G +++
Sbjct: 213 IAVXNKGELQQVGTPDEV 230
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 97/218 (44%), Gaps = 20/218 (9%)
Query: 1239 GVVGRTGSGKSTLIQALFRVVEPSG----GRILIDGVDISMIGLQDLR----SRLSIIPQ 1290
+VG + SGKST+I+A+ + + P+G GR+L G D+ + ++LR ++++PQ
Sbjct: 38 AIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIALVPQ 97
Query: 1291 DPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIVRQDQRLL------DAPVAEDGEN 1344
Q ++ + +E D + H I + ++L +A +
Sbjct: 98 ---AAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPEAVLNSYPLQ 154
Query: 1345 WSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQ--TIREETSRCTVITVAHR 1402
S G +Q V DE T+++D T I Q ++ + T+I V H
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHD 214
Query: 1403 IPTVID-NDLVLVLDEGKVLEYDSPRQLLEDNSSSFSK 1439
I + D V V+ G ++EY+S Q+ ++ +++
Sbjct: 215 IAVAAELADKVAVIYGGNLVEYNSTFQIFKNPLHPYTR 252
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 662 AYVPQSSWIQTGTIRENILFGKDMRQSF-----YEEVLEGCALNQDIEMWADGDLSVVGE 716
A VPQ++ + I KD ++ + E++E + + + M +V+
Sbjct: 93 ALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKAS--EKLRMVRLNPEAVLNS 150
Query: 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLY 775
+ LSGG KQR+ +A A+ + V I D+P SA+D T H+ + K T+++
Sbjct: 151 YPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIF 210
Query: 776 TTHQLEF-LDAADLVLVMKDGKI 797
TH + + AD V V+ G +
Sbjct: 211 VTHDIAVAAELADKVAVIYGGNL 233
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 714 VGERGINLSGGQKQRIQLA---RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+G+ LSGG+ QRI+LA R VY+ D+P + + L +Q + + +
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 771 KTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802
TV+ H+++ + A+D VL + G E G+
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPGAGEDGGR 815
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 1196 SRPSPEWPSSGKIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTL 1251
SRPSP++P G +++ Q+N LK I+ P + + G +GSGKS+L
Sbjct: 4 SRPSPDFPDGGFVQVRGAR-QHN------LKDISVKVPRDALVVFTGVSGSGKSSL 52
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 721 LSGGQKQRIQLARAVYSN--SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTT- 777
LS G+ QR++LA +YSN VY+ D+P + + T L L L+
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHP-ADTEALLSALENLKRGGNSLFVVE 438
Query: 778 HQLEFLDAADLVLVM------KDGKIEQSGKYEDL 806
H L+ + AD ++ + K G+I SG E L
Sbjct: 439 HDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGL 473
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGG+K+R+ +A + D+ I D+P +D T L + KTV+ +H +
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198
Query: 781 E-FLDAADLVLVMKDGK 796
E ++ D V+V++ GK
Sbjct: 199 ETVINHVDRVVVLEKGK 215
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 1240 VVGRTGSGKSTLIQALFRVVEPSGGRILIDG 1270
V G TGSGKSTL+Q + ++EP+ G +L DG
Sbjct: 38 VAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG 68
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGG+K+R+ +A + D+ I D+P +D T L + KTV+ +H +
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 200
Query: 781 E-FLDAADLVLVMKDGK 796
E ++ D V+V++ GK
Sbjct: 201 ETVINHVDRVVVLEKGK 217
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 1206 GKIELENLLVQYNPTLPM---VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS 1262
G+IE+ N+ ++ P+ L+ ++ + + V G TGSGKSTL+Q + ++EP+
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 1263 GGRILIDG 1270
G +L DG
Sbjct: 63 SGDVLYDG 70
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD--AHTGTHLFKQCLMGLLSQKTVLYTTH 778
LS G+KQR+ +ARA+ V I D+P + +D A L +Y TH
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTH 221
Query: 779 QLEFLDAA-DLVLVMKDGKIEQSGKYEDLIADQN 811
+E + A +L++KDG+ Q G ED++ +N
Sbjct: 222 FIEEITANFSKILLLKDGQSIQQGAVEDILTSEN 255
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 15/139 (10%)
Query: 655 IKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714
+K+ K YV +S GT+ E IL D R +EV E + +W + D ++
Sbjct: 86 LKIVHKIQYVEYASKFLKGTVNE-ILTKIDERGK-KDEVKELLNMTN---LW-NKDANI- 138
Query: 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVL 774
LSGG QR+ +A ++ +DVYIFD P S +D ++ K + LL K V+
Sbjct: 139 ------LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK-AIRELLKNKYVI 191
Query: 775 YTTHQLEFLD-AADLVLVM 792
H L LD DL+ ++
Sbjct: 192 VVDHDLIVLDYLTDLIHII 210
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 689 FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748
F+EEV + L++ +E + +LSGG+ Q++ +A + +D+Y+ D P
Sbjct: 365 FFEEVTKRLNLHRLLESNVN-----------DLSGGELQKLYIAATLAKEADLYVLDQPS 413
Query: 749 SAVDAHTGTHLFKQCLMGLLSQKTVLY-TTHQLEFLD-AADLVLVMKDGKIEQSG 801
S +D + K +K V + H L D AD ++V K G+ E++G
Sbjct: 414 SYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK-GEPEKAG 467
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGGQ + +++ RA+ +N + + D+P + V +F L T L H+L
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 213
Query: 781 EF-LDAADLVLVMKDGKIEQSGKYEDLIAD 809
+ L+ D + VM +G+I G+ E+ I +
Sbjct: 214 DIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
Score = 30.4 bits (67), Expect = 8.3, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 1240 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS 1274
++G GSGKSTLI + ++ GR+ + DI+
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDIT 72
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGGQ + +++ RA+ +N + + D+P + V +F L T L H+L
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 213
Query: 781 EF-LDAADLVLVMKDGKIEQSGKYEDLIAD 809
+ L+ D + VM +G+I G+ E+ I +
Sbjct: 214 DIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
Score = 30.4 bits (67), Expect = 8.3, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 1240 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS 1274
++G GSGKSTLI + ++ GR+ + DI+
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDIT 72
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGGQ + +++ RA+ +N + + D P + V +F L T L H+L
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 213
Query: 781 EF-LDAADLVLVMKDGKIEQSGKYEDLIAD 809
+ L+ D + VM +G+I G+ E+ I +
Sbjct: 214 DIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
Score = 30.4 bits (67), Expect = 8.3, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 1240 VVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDIS 1274
++G GSGKSTLI + ++ GR+ + DI+
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDIT 72
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIF-DDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ 779
LSGG++QR+ +ARA+ +N + +F D+P +D+ + L +++ TH+
Sbjct: 141 LSGGEQQRVAIARAL-ANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199
Query: 780 LEFLDAADLVLVMKDGKI 797
E + L MKDGK+
Sbjct: 200 RELAELTHRTLEMKDGKV 217
Score = 38.9 bits (89), Expect = 0.019, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 36/58 (62%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDL 1281
+LKGI+ + + + ++G +GSGKSTL+ L + P+ G++ ++G ++ ++L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKEL 76
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 710 DLSVVGERGI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768
+L V ER I +LSGG+ QR+ +A A+ N+ Y FD+P S +D + +
Sbjct: 147 ELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE 206
Query: 769 SQKTVLYTTHQLEFLDA-ADLVLVM 792
K+VL H L LD +D++ V+
Sbjct: 207 EGKSVLVVEHDLAVLDYLSDIIHVV 231
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 17/96 (17%)
Query: 716 ERGIN-LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTG-------THLFKQCLMGL 767
+R +N LSGG+ QR+ +A + ++D+Y+ D+P + +D HL ++
Sbjct: 396 DREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEK----- 450
Query: 768 LSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803
++KT L H + +D L + +G + GKY
Sbjct: 451 -NEKTALVVEHDVLXIDYVSDRLXVFEG---EPGKY 482
Score = 33.9 bits (76), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 1233 PGEKK----IGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
PGE K IG+VG G GK+T ++ L V EP+ G+I
Sbjct: 306 PGEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKI 343
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 39.7 bits (91), Expect = 0.012, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+E+++L V Y +KGI P + + ++G G+GK+T + A+ +V G+I+
Sbjct: 7 LEVQSLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 1268 IDGVDISMIGLQDL-RSRLSIIPQDPMLF-QGTVRTNL 1303
+G DI+ + R ++++P+ +F + TV NL
Sbjct: 65 FNGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENL 102
Score = 31.2 bits (69), Expect = 4.8, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 674 TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGER----GINLSGGQKQRI 729
T+ EN+ G R+ EG + +D+E W + ER G LSGG++Q +
Sbjct: 97 TVYENLXXGAYNRKD-----KEG--IKRDLE-WIFSLFPRLKERLKQLGGTLSGGEQQXL 148
Query: 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ--LEFLDAAD 787
+ RA+ S + D+P + + +F + + + + T + Q L L A
Sbjct: 149 AIGRALXSRPKLLXXDEPSLGLAPILVSEVF-EVIQKINQEGTTILLVEQNALGALKVAH 207
Query: 788 LVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
V++ G+I GK +L+ ++E VR+
Sbjct: 208 YGYVLETGQIVLEGKASELL---DNEXVRK 234
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 39.3 bits (90), Expect = 0.016, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTT-HQ 779
LS G +R+QLA + N+++Y+ DDP A+D + + K L L + V+ ++ +
Sbjct: 134 LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE 193
Query: 780 LEFLD 784
L + D
Sbjct: 194 LSYCD 198
Score = 35.8 bits (81), Expect = 0.17, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 1207 KIELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
K+E+ +L V Y+ VL+ IT T + G G GK+TL++ + ++P G I
Sbjct: 10 KLEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 1267 LIDGVDISMIGLQDLRSRLSIIPQD 1291
+ +GV I+ + + ++ +P++
Sbjct: 67 IYNGVPITKV-----KGKIFFLPEE 86
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSD---VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+G+ LSGG+ QR++LA ++ S+ +YI D+P + + L + +
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 771 KTVLYTTHQLEFLDAADLVLVM------KDGKIEQSGKYEDLIADQNSELVRQMK 819
TVL H L+ + AD ++ + + G+I G E++ + S R +K
Sbjct: 899 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 953
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 721 LSGGQKQRIQLARAVYS--NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTH 778
LSGG+ QRI+LA + S +Y+ D+P + L T++ H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 564
Query: 779 QLEFLDAADLVL------VMKDGKIEQSGKYEDLIADQNS 812
+ + AAD ++ + G++ +G E+++ D NS
Sbjct: 565 DEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNS 604
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSD---VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+G+ LSGG+ QR++LA ++ S+ +YI D+P + + L + +
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 771 KTVLYTTHQLEFLDAADLVLVM------KDGKIEQSGKYEDLIADQNSELVRQMK 819
TVL H L+ + AD ++ + + G+I G E++ + S R +K
Sbjct: 899 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 953
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK--TVLYTT 777
+LSGGQ+Q I +ARA+ S + + D+P SA+D + L+ L + TV++TT
Sbjct: 128 SLSGGQRQLILIARAIASECKLILLDEPTSALDL-ANQDIVLSLLIDLAQSQNMTVVFTT 186
Query: 778 HQ 779
HQ
Sbjct: 187 HQ 188
Score = 36.6 bits (83), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 26/178 (14%)
Query: 1238 IGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGL--QDLRSRLSIIPQDPMLF 1295
+ V+G+ G GKSTL+ L + P G+I + IG Q S + D +L
Sbjct: 34 LAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV----YQSIGFVPQFFSSPFAYSVLDIVLM 89
Query: 1296 QGTVRTNLDPLEQHSDQEI----WEVINKCHLAEIVRQDQRLLDAPVAEDGENWSVGQRQ 1351
+ N + D ++ + +N HLA+ + + S GQRQ
Sbjct: 90 GRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK--------------REFTSLSGGQRQ 135
Query: 1352 LVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIRE--ETSRCTVITVAHRIPTVI 1407
L+ DE T+++D A +++ + + ++ TV+ H+ V+
Sbjct: 136 LILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVV 193
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSD---VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+G+ LSGG+ QR++LA ++ S+ +YI D+P + + L + +
Sbjct: 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 596
Query: 771 KTVLYTTHQLEFLDAADLVLVM------KDGKIEQSGKYEDLIADQNSELVRQMK 819
TVL H L+ + AD ++ + + G+I G E++ + S R +K
Sbjct: 597 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 651
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 721 LSGGQKQRIQLARAVYS--NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTH 778
LSGG+ QRI+LA + S +Y+ D+P + L T++ H
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262
Query: 779 QLEFLDAADLVL------VMKDGKIEQSGKYEDLIADQNS 812
+ + AAD ++ + G++ +G E+++ D NS
Sbjct: 263 DEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNS 302
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 13/90 (14%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD-------AHTGTHLFKQCLMGLLSQKT 772
+LSGG+ QR+ +A + ++D+Y+ D+P + +D + HL ++ ++KT
Sbjct: 457 DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK------NEKT 510
Query: 773 VLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802
L H + +D L++ +G+ + G+
Sbjct: 511 ALVVEHDVLMIDYVSDRLIVFEGEPGRHGR 540
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGG+ QR+ +A A+ + Y FD+P S +D + + K VL H L
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 274
Query: 781 EFLD 784
LD
Sbjct: 275 AVLD 278
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 1233 PGEKK----IGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
PGE + IG+VG G GK+T ++ L V EP+ G++
Sbjct: 362 PGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 399
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 13/90 (14%)
Query: 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD-------AHTGTHLFKQCLMGLLSQKT 772
+LSGG+ QR+ +A + ++D+Y+ D+P + +D + HL ++ ++KT
Sbjct: 471 DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK------NEKT 524
Query: 773 VLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802
L H + +D L++ +G+ + G+
Sbjct: 525 ALVVEHDVLMIDYVSDRLIVFEGEPGRHGR 554
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGG+ QR+ +A A+ + Y FD+P S +D + + K VL H L
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 288
Query: 781 EFLD 784
LD
Sbjct: 289 AVLD 292
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 1233 PGEKK----IGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
PGE + IG+VG G GK+T ++ L V EP+ G++
Sbjct: 376 PGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 38.1 bits (87), Expect = 0.034, Method: Composition-based stats.
Identities = 57/231 (24%), Positives = 92/231 (39%), Gaps = 20/231 (8%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPS--GGRILIDGVDISMIGLQDL 1281
+LKG+ P + ++G G+GKSTL + L E + G IL+DG +I + D
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS-PDE 76
Query: 1282 RSR--LSIIPQDPMLFQGTVRTNLDPLEQHSD-------QEIWEVINKCHLAEIVRQDQR 1332
R+R L + Q P+ G N L + E W + K E++ D+
Sbjct: 77 RARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKA--LELLDWDES 134
Query: 1333 LLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQ---TIRE 1389
L + E +S G+++ DE + +D V+ + +R
Sbjct: 135 YLSRYL---NEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG 191
Query: 1390 ETSRCTVITVAHRIPTVIDNDLVLVLDEGKVLEYDSPRQLLEDNSSSFSKL 1440
VIT RI I D V V+ +G+V+ P LE + + L
Sbjct: 192 PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKGYEWL 242
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780
LSGG+ QR + + +DVY+FD+P S +D + + L K V+ H L
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL 281
Query: 781 EFLD-AADLVLVM 792
LD +D V ++
Sbjct: 282 SVLDYLSDFVCII 294
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 681 FGKDMRQSFYEEVLEGCALNQDIEMWADGDL---SVVGERGINLSGGQKQRIQLARAVYS 737
F +RQ F++++ G LN + L ++ + +LSGG+ QR+ + A+
Sbjct: 426 FPGTVRQLFFKKI-RGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGI 484
Query: 738 NSDVYIFDDPFSAVDAH 754
+D+Y+ D+P + +D+
Sbjct: 485 PADIYLIDEPSAYLDSE 501
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 38.1 bits (87), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLYTTH- 778
LSGGQ+QR LARA+ + ++ + D+PFSA+D + + + L + K+ ++ +H
Sbjct: 139 LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD 198
Query: 779 QLEFLDAADLVLVMKDGKIEQSGKYEDL 806
+ E L AD + VMK G+I Q+ +L
Sbjct: 199 REEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 37.0 bits (84), Expect = 0.088, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-- 771
+ +R S G +++ +ARA+ N + I D+P S +D + K ++ SQ+
Sbjct: 140 IKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRK--ILKQASQEGL 197
Query: 772 TVLYTTH---QLEFLDAADLVLVMKDGKIEQSGKYEDL 806
T+L ++H ++EFL D + ++ +G I ++G E+L
Sbjct: 198 TILVSSHNMLEVEFL--CDRIALIHNGTIVETGTVEEL 233
Score = 36.2 bits (82), Expect = 0.14, Method: Composition-based stats.
Identities = 40/219 (18%), Positives = 97/219 (44%), Gaps = 24/219 (10%)
Query: 1224 VLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRS 1283
+LKGI+ + G++G G+GK+T ++ + +++PS G + + G ++ + ++R
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV-VEEPHEVRK 88
Query: 1284 RLSIIPQDPMLFQGTVRTNLDPLE---------QHSDQEIWEVINKCHLAEIVRQDQRLL 1334
+S +P++ ++ N+ +E S EI E++ + EI +++
Sbjct: 89 LISYLPEEAGAYR-----NMQGIEYLRFVAGFYASSSSEIEEMVERA--TEIAGLGEKIK 141
Query: 1335 DAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETSR- 1393
D +S G + + DE T+ +D +++ +++ +
Sbjct: 142 DRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 196
Query: 1394 CTVITVAHRIPTV-IDNDLVLVLDEGKVLEYDSPRQLLE 1431
T++ +H + V D + ++ G ++E + +L E
Sbjct: 197 LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 36.6 bits (83), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
LSGG K ++ LARAV N+D+ + D+P + +D
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 36/155 (23%)
Query: 667 SSWIQTGTIREN---ILFGKDMRQSFY---------EEVLEGCA-LNQDIEMWADGDLSV 713
++WI G + E+ ++ DM+++ +E+ E C+ L D E+ + +
Sbjct: 842 NAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI-- 899
Query: 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS---- 769
RG LSGGQK ++ LA + + + D+P + +D + +G LS
Sbjct: 900 ---RG--LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS---------LGALSKALK 945
Query: 770 --QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSG 801
+ V+ TH EF + + V +KDG++ SG
Sbjct: 946 EFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRIL 1267
+++ N+ QY T + I +I V+G G+GKSTLI L + P+ G +
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Query: 1268 I-DGVDISMI---GLQDLRSRLSIIPQDPMLFQ---GTVRTNLDPLEQHSDQEIWEVINK 1320
+ I+ I + S L P + + ++ G R +D + ++ E +NK
Sbjct: 732 THENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNK 791
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
LSGG K ++ LARAV N+D+ + D+P + +D
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS------QKTVL 774
LSGGQK ++ LA + + + D+P + +D + +G LS + V+
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS---------LGALSKALKEFEGGVI 952
Query: 775 YTTHQLEFL-DAADLVLVMKDGKIEQSG 801
TH EF + + V +KDG+ SG
Sbjct: 953 IITHSAEFTKNLTEEVWAVKDGRXTPSG 980
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+++ N QY T + I +I V+G G+GKSTLI L + P+ G +
Sbjct: 672 VKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752
LSGG K ++ LARAV N+D+ + D+P + +D
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS------QKTVL 774
LSGGQK ++ LA + + + D+P + +D + +G LS + V+
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS---------LGALSKALKEFEGGVI 946
Query: 775 YTTHQLEFL-DAADLVLVMKDGKIEQSG 801
TH EF + + V +KDG+ SG
Sbjct: 947 IITHSAEFTKNLTEEVWAVKDGRXTPSG 974
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 1208 IELENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRI 1266
+++ N QY T + I +I V+G G+GKSTLI L + P+ G +
Sbjct: 666 VKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 36.2 bits (82), Expect = 0.13, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 15/107 (14%)
Query: 721 LSGGQKQRIQLARAVY-----SNSDVYIF-DDPFSAVDAHTGTHLFKQCLMGLLSQKTVL 774
LSGG++QR+QLAR + + ++F D+P SA+D + H + L+ L+++ L
Sbjct: 142 LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLR--LLRQLTRQEPL 199
Query: 775 YTTHQLEFLDA----ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817
L L+ AD ++++ GK+ G E+++ N+E + Q
Sbjct: 200 AVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL---NAETLTQ 243
Score = 34.7 bits (78), Expect = 0.36, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 98/232 (42%), Gaps = 18/232 (7%)
Query: 1210 LENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILID 1269
LE + Y+ ++ ++ + + ++G G+GKSTL++ L + PS G +
Sbjct: 12 LEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLL 71
Query: 1270 GVDISMIGLQDLRSRLSIIPQD-----PMLFQGTVRTNLDPLEQHSD-QEIWEVINKCHL 1323
G +++ + L +++ Q P ++ P D Q + +V+ +
Sbjct: 72 GQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDC 131
Query: 1324 AEIVRQDQRLLDAPVAEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASID----TAT 1379
+ ++D R+L GE V +++ DE T+++D T
Sbjct: 132 LALAQRDYRVLSG-----GEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHT 186
Query: 1380 DNVIQQTIREETSRCTVITVAHRIP-TVIDNDLVLVLDEGKVLEYDSPRQLL 1430
+++Q R+E V V H + + D +++L +GK++ +P ++L
Sbjct: 187 LRLLRQLTRQEP--LAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 35.8 bits (81), Expect = 0.16, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 714 VGERGINLSGGQKQRIQLARAVYS-------NSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766
+G LSGG+ QR++LA V + + D P +++D + L K ++
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDK--ILS 177
Query: 767 LLSQK--TVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQN 811
LSQ+ ++ ++H L L A ++K GK+ SG+ E+++ N
Sbjct: 178 ALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 225
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 721 LSGGQKQRIQLARAVYSN--SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTH 778
LSGG+ QRI+LA + S +Y+ D+P + L + T++ H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 779 QLEFLDAADLVLVM------KDGKIEQSGKYEDLIADQNS 812
+ ++ AD ++ + G+I SG Y++L+ +++S
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDS 621
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Query: 714 VGERGINLSGGQKQRIQLARAVYSNS---DVYIFDDPFSAVDAHTGTHL-----FKQCLM 765
+G+ LSGG+ QR++LA + S VYI D+P TG H +
Sbjct: 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPT------TGLHFDDIRKLLNVIN 910
Query: 766 GLLSQ-KTVLYTTHQLEFLDAADLVL 790
GL+ + TV+ H L+ + +D ++
Sbjct: 911 GLVDKGNTVIVIEHNLDVIKTSDWII 936
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 35.4 bits (80), Expect = 0.25, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 714 VGERGINLSGGQKQRIQLARAVYS-------NSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766
+G LSGG+ QR++LA V + + D P ++D + L K ++
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDK--ILS 177
Query: 767 LLSQK--TVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQN 811
LSQ+ ++ ++H L L A ++K GK+ SG+ E+++ N
Sbjct: 178 ALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 225
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 35.0 bits (79), Expect = 0.28, Method: Composition-based stats.
Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 24/180 (13%)
Query: 1225 LKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDISMIGLQDLRSR 1284
L+ I GEK I ++G GSGK+TL++A+ ++ P G I I+G+++ I R+
Sbjct: 21 LENINLEVNGEKVI-ILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI-----RNY 73
Query: 1285 LSIIPQDPMLFQGTVRTN-----LDPLEQHSDQEIWEVINKCHLA-EIVRQDQRLLDAPV 1338
+ P ++ V N + L+ E++ L EI+R+ L
Sbjct: 74 IRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKL---- 129
Query: 1339 AEDGENWSVGQRQLVCXXXXXXXXXXXXXXDEATASIDTATDNVIQQTIREETSRCTVIT 1398
S GQ LV DE ++D A +VI + I+E ++T
Sbjct: 130 -------SAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVT 182
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 34.7 bits (78), Expect = 0.37, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 714 VGERGINLSGGQKQRIQLARAVYS-------NSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766
+G LSGG+ QR++LA V + + D+P +++D + L K ++
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDK--ILS 177
Query: 767 LLSQK--TVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQN 811
LSQ+ ++ ++H L L A ++K GK SG+ E+++ N
Sbjct: 178 ALSQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPN 225
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Query: 714 VGERGINLSGGQKQRIQLA---RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ 770
+G+ LSGG+ QRI+LA R + +YI D+P + L + +
Sbjct: 799 LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG 858
Query: 771 KTVLYTTHQLEFLDAADLVLVM------KDGKIEQSGKYEDLIADQNSELVRQMK 819
TV+ H L+ + AD ++ + + G I +G E++ + +S R +K
Sbjct: 859 NTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRFLK 913
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 721 LSGGQKQRIQLARAVYSN--SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTH 778
LSGG+ QRI+LA + S +Y+ D+P + L K TV+ H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 779 QLEFLDAADLVL 790
E + AD ++
Sbjct: 525 DEEVIRNADHII 536
>pdb|2ZCN|A Chain A, Crystal Structure Of Icar, A Repressor Of The Tetr Family
pdb|2ZCN|B Chain B, Crystal Structure Of Icar, A Repressor Of The Tetr Family
pdb|2ZCN|C Chain C, Crystal Structure Of Icar, A Repressor Of The Tetr Family
pdb|2ZCN|D Chain D, Crystal Structure Of Icar, A Repressor Of The Tetr Family
Length = 192
Score = 33.9 bits (76), Expect = 0.78, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 1044 QAYYITTARELARMVGTRKAPILHHF--SESIAGATTIRCFNQENRFLLRSHSLIDDYS 1100
+ Y TT ++++ V +KA + +H+ E I + CFN FLLR+H D+YS
Sbjct: 23 KGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVENCFNYFIDFLLRNHD--DNYS 79
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 714 VGERGINLSGGQKQRIQLARAVYS-------NSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766
+G LSGG+ QR++LA V + + D+P +++D + L K ++
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDK--ILS 177
Query: 767 LLSQK--TVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQN 811
L Q+ ++ ++H L L A ++K GK SG+ E+++ N
Sbjct: 178 ALCQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPN 225
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals A
Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals A
Dimeric Gtpase
Length = 184
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 1237 KIGVVGRTGSGKSTLIQALFRVVEPS-GGRILIDGVDIS--MIGLQDLRSR 1284
K+ +VG TGSGK+TL+Q L + + G + G+D+ I ++D R R
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKR 54
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A
Dimeric Gtpase
Length = 171
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 1237 KIGVVGRTGSGKSTLIQALFRVVEPS-GGRILIDGVDIS--MIGLQDLRSR 1284
K+ +VG TGSGK+TL+Q L + + G + G+D+ I ++D R R
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKR 52
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 31.6 bits (70), Expect = 3.4, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 34/116 (29%)
Query: 1237 KIGVVGRTGSGKSTLIQALFR----VVEPSGG--------RILIDGVDISMIGLQDLRSR 1284
K+ +VGR GKSTL A+ +V P G + IDG + LR +
Sbjct: 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRK 241
Query: 1285 LSIIPQDPMLFQGTVRTNLDPLEQHSDQEIWEVINKCHLAEIV--------RQDQR 1332
+ P+ +E++S+ + + I K + IV RQDQR
Sbjct: 242 SRVEPRT--------------VEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQR 283
>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 753
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 1211 ENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG 1270
ENLLV N + +V + + T P + T S +QA F+++ P+GGR+ +
Sbjct: 242 ENLLVNLNESKELV-QDLLKTLP--QMFTKTLETQSALGPALQAAFKLMSPTGGRMSVFQ 298
Query: 1271 VDISMIGLQDLRSR 1284
+ +G+ L+ R
Sbjct: 299 TQLPTLGVGALKPR 312
>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 748
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 1211 ENLLVQYNPTLPMVLKGITCTFPGEKKIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDG 1270
ENLLV N + +V + + T P + T S +QA F+++ P+GGR+ +
Sbjct: 237 ENLLVNLNESKELV-QDLLKTLP--QMFTKTLETQSALGPALQAAFKLMSPTGGRMSVFQ 293
Query: 1271 VDISMIGLQDLRSR 1284
+ +G+ L+ R
Sbjct: 294 TQLPTLGVGALKPR 307
>pdb|2QM8|A Chain A, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
pdb|2QM8|B Chain B, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
Length = 337
Score = 30.4 bits (67), Expect = 7.4, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 1237 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDI-------SMIGLQDLRSRLSI 1287
++G+ G G GKST I AL ++ +G ++ + VD S++G + +RL+I
Sbjct: 57 RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRXARLAI 114
>pdb|2QM7|A Chain A, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
pdb|2QM7|B Chain B, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
Length = 337
Score = 30.4 bits (67), Expect = 8.5, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 1237 KIGVVGRTGSGKSTLIQALFRVVEPSGGRILIDGVDI-------SMIGLQDLRSRLSI 1287
++G+ G G GKST I AL ++ +G ++ + VD S++G + +RL+I
Sbjct: 57 RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAI 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,303,497
Number of Sequences: 62578
Number of extensions: 1341441
Number of successful extensions: 3334
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2986
Number of HSP's gapped (non-prelim): 258
length of query: 1458
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1347
effective length of database: 8,027,179
effective search space: 10812610113
effective search space used: 10812610113
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)