BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000506
(1458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 100/205 (48%), Gaps = 18/205 (8%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARV 942
+L+DV+ F G + ++G +G+GKTTL+ +LAG G+I + G P + +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA---GEIFLDGSPADPFLLRKN 82
Query: 943 SGYCEQN-DIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVG 1001
GY QN TV E + FS L + +S+ RK + +V++LV + G
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFS--LEIMGLDESEMRKR-IKKVLELV-------GLSG 132
Query: 1002 LPGVD--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
L D LS Q++RL IA L + + +DEP S LD + + + + + + G+
Sbjct: 133 LAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKG 192
Query: 1060 VVCTIHQPSIDIFEAFDELLLMKRG 1084
++ H+ ++ + D +L + G
Sbjct: 193 IILVTHE--LEYLDDMDFILHISNG 215
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 102/249 (40%), Gaps = 47/249 (18%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTXXXXXXXXXXXXXXXXXXIKYCGHEFKEFVPQR 244
+LKDV+ + ++ +++G G+GKTT I G F+ ++
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGE----IFLDGSPADPFLLRK 81
Query: 245 TCAYISQN-DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYM 303
Y+ QN TV E + FS +G+ +E+ +R K+
Sbjct: 82 NVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDE-----SEMRKRIKK------------- 123
Query: 304 KATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVL 363
VL+L+GL A D + +SGGQK+R+ ML + L
Sbjct: 124 ----------------VLELVGLSGLA---AADPLN--LSGGQKQRLAIASMLARDTRFL 162
Query: 364 LMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVY 423
+DE + LD + +I + ++ + + E I+ L+ E D D I+ +S G I +
Sbjct: 163 ALDEPVSMLDPPSQREIFQVLESLKN--EGKGII-LVTHELEYLDDMDFILHISNGTIDF 219
Query: 424 QGPREKVLE 432
G E+ +E
Sbjct: 220 CGSWEEFVE 228
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 23/164 (14%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG---YTEGDISISGYPKNQAT 938
L +++ + G AL+G SG+GK+TL+ +AG + T G + E D++ PK+
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVT-ELPPKD--- 74
Query: 939 FARVSGYCEQNDIHSPHVTVYESLLFSAWLRLS--SDIDSKTRKMFVDEVMDLVELEPLT 996
R G QN PH+TVY+++ F LR + +ID K R EV ++ ++ L
Sbjct: 75 --RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVR-----EVAKMLHIDKLL 127
Query: 997 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
N LS Q++R+ IA LV P ++ +DEP S LDA
Sbjct: 128 NRYPW-----QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQ 401
+SGGQ++RV LV +VLL+DE + LD+ ++ +K++ L ITT V +
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT-VYVTH 192
Query: 402 PAPEAYDLFDNIILLSEGQIVYQGPREKV 430
EA + D I ++ EG+I+ G ++V
Sbjct: 193 DQAEALAMADRIAVIREGEILQVGTPDEV 221
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 119/244 (48%), Gaps = 34/244 (13%)
Query: 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLA 915
L+ HV+++ D D Q+LRD+S +P + A G SG GK+T+ +L
Sbjct: 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL- 48
Query: 916 GRKTGGYTEGDISISGYPKNQATFAR---VSGYCEQNDIHSPHVTVYESLLFSAWLRLSS 972
+ T G+I+I G P + + G+ Q D T+ E+L + +
Sbjct: 49 -ERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQ-DSAIMAGTIRENLTYGLEGDYTD 106
Query: 973 D-----IDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPS 1027
+ +D + FV+ + D + N VG GV +S QR+RL IA + NP
Sbjct: 107 EDLWQVLDLAFARSFVENMPDQL------NTEVGERGVK-ISGGQRQRLAIARAFLRNPK 159
Query: 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087
I+ +DE T+ LD+ + ++V + + +++ GRT + H+ S I +A D++ +++ GQ+
Sbjct: 160 ILMLDEATASLDSESESMVQKAL-DSLMKGRTTLVIAHRLST-IVDA-DKIYFIEK-GQI 215
Query: 1088 IYAG 1091
+G
Sbjct: 216 TGSG 219
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 331 DTMVGDQMRRGV--SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMV 388
+T VG+ RGV SGGQ++R+ + K+L++DE + LDS + + K + ++
Sbjct: 130 NTEVGE---RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM 186
Query: 389 HVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVL 431
I L +A D I + +GQI G +++
Sbjct: 187 KGRTTLVIAHRLSTIVDA----DKIYFIEKGQITGSGKHNELV 225
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 106/217 (48%), Gaps = 36/217 (16%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQAT---F 939
+L +++ + G + ++G SG+GK+TL ++ ++ G + I G+ A
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 77
Query: 940 ARVSGYCEQNDI------------HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVM 987
R G Q+++ +P ++V E ++++A L + D S+ R+ +
Sbjct: 78 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREGY----- 131
Query: 988 DLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
N +VG G GLS QR+R+ IA LV NP I+ DE TS LD + ++M
Sbjct: 132 ---------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1048 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
R + + + GRTV+ H+ S + D +++M++G
Sbjct: 182 RNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 13/138 (9%)
Query: 294 KPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTG 353
P ++ + A LAG A D++ +L +T+VG+Q G+SGGQ++R+
Sbjct: 103 NPGMSVEKVIYAAKLAG-----AHDFISELRE---GYNTIVGEQGA-GLSGGQRQRIAIA 153
Query: 354 EMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413
LV K+L+ DE ++ LD + I + M ++ + I L A D I
Sbjct: 154 RALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA----DRI 209
Query: 414 ILLSEGQIVYQGPREKVL 431
I++ +G+IV QG +++L
Sbjct: 210 IVMEKGKIVEQGKHKELL 227
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 106/217 (48%), Gaps = 36/217 (16%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQAT---F 939
+L +++ + G + ++G SG+GK+TL ++ ++ G + I G+ A
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 75
Query: 940 ARVSGYCEQNDI------------HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVM 987
R G Q+++ +P ++V E ++++A L + D S+ R+ +
Sbjct: 76 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREGY----- 129
Query: 988 DLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
N +VG G GLS QR+R+ IA LV NP I+ DE TS LD + ++M
Sbjct: 130 ---------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1048 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
R + + + GRTV+ H+ S + D +++M++G
Sbjct: 180 RNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 13/138 (9%)
Query: 294 KPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTG 353
P ++ + A LAG A D++ +L +T+VG+Q G+SGGQ++R+
Sbjct: 101 NPGMSVEKVIYAAKLAG-----AHDFISELRE---GYNTIVGEQGA-GLSGGQRQRIAIA 151
Query: 354 EMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413
LV K+L+ DE ++ LD + I + M ++ + I L A D I
Sbjct: 152 RALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA----DRI 207
Query: 414 ILLSEGQIVYQGPREKVL 431
I++ +G+IV QG +++L
Sbjct: 208 IVMEKGKIVEQGKHKELL 225
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 106/217 (48%), Gaps = 36/217 (16%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQAT---F 939
+L +++ + G + ++G SG+GK+TL ++ ++ G + I G+ A
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 81
Query: 940 ARVSGYCEQNDI------------HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVM 987
R G Q+++ +P ++V E ++++A L + D S+ R+ +
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREGY----- 135
Query: 988 DLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
N +VG G GLS QR+R+ IA LV NP I+ DE TS LD + ++M
Sbjct: 136 ---------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1048 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
R + + + GRTV+ H+ S + D +++M++G
Sbjct: 186 RNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 13/138 (9%)
Query: 294 KPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTG 353
P ++ + A LAG A D++ +L +T+VG+Q G+SGGQ++R+
Sbjct: 107 NPGMSVEKVIYAAKLAG-----AHDFISELRE---GYNTIVGEQGA-GLSGGQRQRIAIA 157
Query: 354 EMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413
LV K+L+ DE ++ LD + I + M ++ + I L A D I
Sbjct: 158 RALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA----DRI 213
Query: 414 ILLSEGQIVYQGPREKVL 431
I++ +G+IV QG +++L
Sbjct: 214 IVMEKGKIVEQGKHKELL 231
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 99/212 (46%), Gaps = 15/212 (7%)
Query: 885 RDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFA-RVS 943
+D++ G +G SG GK+TL+ ++AG +T T GD+ I N A R
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGV 77
Query: 944 GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLP 1003
G Q+ PH++V E++ F L + + V++V ++++L L +
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKL---AGAKKEVINQRVNQVAEVLQLAHLLDRKP--- 131
Query: 1004 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVV 1061
LS QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++
Sbjct: 132 --KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMI 188
Query: 1062 CTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093
H ++ D+++++ G PL
Sbjct: 189 YVTHD-QVEAMTLADKIVVLDAGRVAQVGKPL 219
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITT 395
D+ + +SGGQ++RV G LV V L+DE + LD++ Q+ + ++ H T
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRL-HKRLGRT 186
Query: 396 IVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFL 451
++ + EA L D I++L G++ G K LE + Y P + VA F+
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVG---KPLELYHY-----PADRFVAGFI 234
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 99/212 (46%), Gaps = 15/212 (7%)
Query: 885 RDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFA-RVS 943
+D++ G +G SG GK+TL+ ++AG +T T GD+ I N A R
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGV 77
Query: 944 GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLP 1003
G Q+ PH++V E++ F L + + V++V ++++L L +
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKL---AGAKKEVINQRVNQVAEVLQLAHLLDRKP--- 131
Query: 1004 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVV 1061
LS QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++
Sbjct: 132 --KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMI 188
Query: 1062 CTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093
H ++ D+++++ G PL
Sbjct: 189 YVTHD-QVEAMTLADKIVVLDAGRVAQVGKPL 219
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITT 395
D+ + +SGGQ++RV G LV V L+DE + LD++ Q+ + ++ H T
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRL-HKRLGRT 186
Query: 396 IVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFL 451
++ + EA L D I++L G++ G K LE + Y P + VA F+
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVG---KPLELYHY-----PADRFVAGFI 234
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 106/217 (48%), Gaps = 36/217 (16%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQAT---F 939
+L +++ + G + ++G +G+GK+TL ++ ++ G + I G+ A
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 77
Query: 940 ARVSGYCEQNDI------------HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVM 987
R G Q+++ +P ++V E ++++A L + D S+ R+ +
Sbjct: 78 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREGY----- 131
Query: 988 DLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
N +VG G GLS QR+R+ IA LV NP I+ DE TS LD + ++M
Sbjct: 132 ---------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1048 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
R + + + GRTV+ H+ S + D +++M++G
Sbjct: 182 RNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 13/138 (9%)
Query: 294 KPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTG 353
P ++ + A LAG A D++ +L +T+VG+Q G+SGGQ++R+
Sbjct: 103 NPGMSVEKVIYAAKLAG-----AHDFISELRE---GYNTIVGEQGA-GLSGGQRQRIAIA 153
Query: 354 EMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413
LV K+L+ DE ++ LD + I + M ++ + I L A D I
Sbjct: 154 RALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA----DRI 209
Query: 414 ILLSEGQIVYQGPREKVL 431
I++ +G+IV QG +++L
Sbjct: 210 IVMEKGKIVEQGKHKELL 227
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 128/263 (48%), Gaps = 44/263 (16%)
Query: 883 LLRDVSGVFRPGVLTAL---------------MGVSGAGKTTLMDVLAG---RKTGG-YT 923
++++VS VF+ G + AL +G SGAGKTT M ++AG TG Y
Sbjct: 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64
Query: 924 EGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFS-AWLRLSSDIDSKTRKMF 982
+ + S R G Q P++T +E++ F +++S + + RK
Sbjct: 65 DDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE---EIRKR- 120
Query: 983 VDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR- 1041
V+EV ++++ + N P LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 121 VEEVAKILDIHHVLNH---FP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
Query: 1042 --AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV-------IYAGP 1092
+A +++ V++ + G T++ H P+ DIF D + ++ +G V +Y P
Sbjct: 176 RDSARALVKEVQSRL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232
Query: 1093 LGRQSQKLVEYFEAVPGVPRITN 1115
+ Q L+ + G ++TN
Sbjct: 233 VSIQVASLIGEINELEG--KVTN 253
Score = 37.4 bits (85), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSL 399
R +SG Q++RV LV +LL+DE + LD+ +K++ L +T +V
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 400 LQPAPEAYDLFDNIILLSEGQIVYQGPRE 428
PA + + + D + +L +G++V G E
Sbjct: 199 HDPA-DIFAIADRVGVLVKGKLVQVGKPE 226
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 106/217 (48%), Gaps = 36/217 (16%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQAT---F 939
+L +++ + G + ++G SG+GK+TL ++ ++ G + I G+ A
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 81
Query: 940 ARVSGYCEQNDI------------HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVM 987
R G Q+++ +P ++V E ++++A L + D S+ R+ +
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREGY----- 135
Query: 988 DLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
N +VG G GLS QR+R+ IA LV NP I+ D+ TS LD + ++M
Sbjct: 136 ---------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 1048 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
R + + + GRTV+ H+ S + D +++M++G
Sbjct: 186 RNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 13/138 (9%)
Query: 294 KPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTG 353
P ++ + A LAG A D++ +L +T+VG+Q G+SGGQ++R+
Sbjct: 107 NPGMSVEKVIYAAKLAG-----AHDFISELRE---GYNTIVGEQGA-GLSGGQRQRIAIA 157
Query: 354 EMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413
LV K+L+ D+ ++ LD + I + M ++ + I L A D I
Sbjct: 158 RALVNNPKILIFDQATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA----DRI 213
Query: 414 ILLSEGQIVYQGPREKVL 431
I++ +G+IV QG +++L
Sbjct: 214 IVMEKGKIVEQGKHKELL 231
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 19/199 (9%)
Query: 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYTEGDISISGYPKNQATFARVSGYCE 947
+ G L+G SG GKTT + ++AG + G GD ++ P + V
Sbjct: 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF---- 89
Query: 948 QNDIHSPHVTVYESLLFSAWLRL--SSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGV 1005
Q+ PH+TVYE++ F ++ +ID + R +L+++E L N
Sbjct: 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRW-----AAELLQIEELLNRYPA---- 140
Query: 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ + +
Sbjct: 141 -QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 199
Query: 1066 QPSIDIFEAFDELLLMKRG 1084
++ D + +M RG
Sbjct: 200 HDQVEAMTMGDRIAVMNRG 218
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQ 401
+SGGQ++RV +V VLLMDE + LD+ + +K++ L++TTI +
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI-YVTH 200
Query: 402 PAPEAYDLFDNIILLSEGQIVYQG 425
EA + D I +++ GQ++ G
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIG 224
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 19/199 (9%)
Query: 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYTEGDISISGYPKNQATFARVSGYCE 947
+ G L+G SG GKTT + ++AG + G GD ++ P + V
Sbjct: 35 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF---- 90
Query: 948 QNDIHSPHVTVYESLLFSAWLRL--SSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGV 1005
Q+ PH+TVYE++ F ++ +ID + R +L+++E L N
Sbjct: 91 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRW-----AAELLQIEELLNRYPA---- 141
Query: 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ + +
Sbjct: 142 -QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 200
Query: 1066 QPSIDIFEAFDELLLMKRG 1084
++ D + +M RG
Sbjct: 201 HDQVEAMTMGDRIAVMNRG 219
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQ 401
+SGGQ++RV +V VLLMDE + LD+ + +K++ L++TTI +
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI-YVTH 201
Query: 402 PAPEAYDLFDNIILLSEGQIVYQG 425
EA + D I +++ GQ++ G
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIG 225
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 128/263 (48%), Gaps = 44/263 (16%)
Query: 883 LLRDVSGVFRPGVLTAL---------------MGVSGAGKTTLMDVLAG---RKTGG-YT 923
++++VS VF+ G + AL +G SGAGKTT M ++AG TG Y
Sbjct: 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64
Query: 924 EGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFS-AWLRLSSDIDSKTRKMF 982
+ + S R G Q P++T +E++ F +++S + + RK
Sbjct: 65 DDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE---EIRKR- 120
Query: 983 VDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR- 1041
V+EV ++++ + N P LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 121 VEEVAKILDIHHVLNH---FP--RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
Query: 1042 --AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV-------IYAGP 1092
+A +++ V++ + G T++ H P+ DIF D + ++ +G V +Y P
Sbjct: 176 RDSARALVKEVQSRL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232
Query: 1093 LGRQSQKLVEYFEAVPGVPRITN 1115
+ Q L+ + G ++TN
Sbjct: 233 VSIQVASLIGEINELEG--KVTN 253
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSL 399
R +SGGQ++RV LV +LL+DE + LD+ +K++ L +T +V
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 400 LQPAPEAYDLFDNIILLSEGQIVYQGPRE 428
PA + + + D + +L +G++V G E
Sbjct: 199 HDPA-DIFAIADRVGVLVKGKLVQVGKPE 226
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 15/212 (7%)
Query: 885 RDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFA-RVS 943
+D++ G +G SG GK+TL+ ++AG +T T GD+ I N A R
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGV 77
Query: 944 GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLP 1003
G Q+ PH++V E++ F L + + V++V ++++L L +
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKL---AGAKKEVINQRVNQVAEVLQLAHLLDRKP--- 131
Query: 1004 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVV 1061
LS QR+R+ I LVA PS+ +D+P S LDA A + MR R GRT++
Sbjct: 132 --KALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGRTMI 188
Query: 1062 CTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093
H ++ D+++++ G PL
Sbjct: 189 YVTHD-QVEAMTLADKIVVLDAGRVAQVGKPL 219
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITT 395
D+ + +SGGQ++RV G LV V L+D+ + LD++ Q+ + ++ H T
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRL-HKRLGRT 186
Query: 396 IVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFL 451
++ + EA L D I++L G++ G K LE + Y P + VA F+
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVG---KPLELYHY-----PADRFVAGFI 234
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 28/196 (14%)
Query: 880 RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTE-GDISISGYPKNQ 936
+++ + VS + G AL+G SG GKTT + +LAG + T G D+ ++ P
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK- 73
Query: 937 ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLR-LSSDIDSK-----TRKMFVDEVMDLV 990
R G QN PH+TV+E++ F R +S D K RK+ +D ++D
Sbjct: 74 ---YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRK 130
Query: 991 ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
+ LS Q++R+ +A LV P ++ DEP S LDA I+ +
Sbjct: 131 PTQ--------------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEI 176
Query: 1051 RN-TVDTGRTVVCTIH 1065
++ + G T V H
Sbjct: 177 KHLQQELGITSVYVTH 192
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 117/302 (38%), Gaps = 46/302 (15%)
Query: 170 LGSLRILPSKKR--KIQILKDVSGLVKPSRMTLLLGPPGAGKTTXXXXXXXXXXXXXXXX 227
+ S+R++ KK K++ + VS VK LLGP G GKTT
Sbjct: 1 MPSIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE- 59
Query: 228 XXIKYCGHEFKEFVPQ-RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISR 286
I + + P+ R + QN + MTV E + F R + E+ +
Sbjct: 60 --IYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISK-----DEVEK 112
Query: 287 REKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQ 346
R E K L D +L D+ +SGGQ
Sbjct: 113 RVVEIARK--------------------LLIDNLL--------------DRKPTQLSGGQ 138
Query: 347 KKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEA 406
++RV LV KVLL DE + LD++ + +K + L IT+ V + EA
Sbjct: 139 QQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITS-VYVTHDQAEA 197
Query: 407 YDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFR 466
+ I + ++G++V G ++V + + M +FL++ + + +Q +
Sbjct: 198 MTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIGNPPTNFLRDFSVSVENKQTILK 257
Query: 467 KD 468
+D
Sbjct: 258 RD 259
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 17/212 (8%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
L++V+ + G ++MG SG+GK+T+++++ TEG++ I N ++
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC--LDKPTEGEVYIDNIKTNDLDDDELT 78
Query: 944 -------GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLT 996
G+ Q P +T E++ + + + R+ E + + ELE
Sbjct: 79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE--- 135
Query: 997 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVD 1055
+ LS Q++R+ IA L NP II D+PT LD++ +M+ ++ +
Sbjct: 136 -ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEE 194
Query: 1056 TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087
G+TVV H ++ F E ++ + G+V
Sbjct: 195 DGKTVVVVTHDINV---ARFGERIIYLKDGEV 223
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQM 387
+SGGQ++RV L ++L D+ + LDS T +I + +K++
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL 191
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 17/213 (7%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP-KNQATFARV 942
+R VS R G + L+G SG+GKTT++ ++AG + T+GD+ I G + R
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQKRN 88
Query: 943 SGYCEQNDIHSPHVTVYESLLFSAWLRL--SSDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000
G QN H+TVY+++ F + ++D++ R E++ + LE N
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVR-----ELLRFMRLESYANRF- 142
Query: 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 1059
LS Q++R+ +A L P ++ DEP + +D + + VR D G T
Sbjct: 143 ----PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVT 198
Query: 1060 VVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
V H + E D +L++ G + P
Sbjct: 199 SVFVTHDQE-EALEVADRVLVLHEGNVEQFGTP 230
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 107/264 (40%), Gaps = 47/264 (17%)
Query: 170 LGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTXXXXXXXXXXXXXXXXXX 229
+G +I P R + + VS ++ M LLGP G+GKTT
Sbjct: 18 VGVEKIYPGGARSV---RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGD--- 71
Query: 230 IKYCGHEFKEFVPQ-RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRRE 288
+ G + PQ R + QN F MTV + + F RE
Sbjct: 72 VWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFG-----------------LRE 114
Query: 289 KEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKK 348
K P E+DA ++ +L+ + L+ A+ + +SGGQ++
Sbjct: 115 KRV---PKDEMDARVRE--------------LLRFMRLESYANRFPHE-----LSGGQQQ 152
Query: 349 RVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYD 408
RV L +VLL DE +D+ ++ +++Q+ + +T++ + EA +
Sbjct: 153 RVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF-VTHDQEEALE 211
Query: 409 LFDNIILLSEGQIVYQGPREKVLE 432
+ D +++L EG + G E+V E
Sbjct: 212 VADRVLVLHEGNVEQFGTPEEVYE 235
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 26/221 (11%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGY-----PKN 935
L++L+ ++ R G + ++G SG+GK+T + L + + EG+I I G N
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDTN 73
Query: 936 QATFARVSGYCEQNDIHSPHVTVYESLLFS-----AWLRLSSDIDSKTRKMFVDEVMDLV 990
G Q PH+TV ++ + W R ++ + E++D V
Sbjct: 74 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAM-------ELLDKV 126
Query: 991 ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
L+ +A D LS Q +R+ IA L P I+ DEPTS LD V+ +
Sbjct: 127 GLKDKAHAYP-----DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVM 181
Query: 1051 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
+ + G T+V H+ E D +L M GG +I G
Sbjct: 182 KQLANEGMTMVVVTHEMGF-AREVGDRVLFMD-GGYIIEEG 220
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQ 401
+SGGQ +RV L K++L DE ++ LD ++ MKQ+ + E T+V +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN--EGMTMVVVTH 196
Query: 402 PAPEAYDLFDNIILLSEGQIVYQGPREKVLE 432
A ++ D ++ + G I+ +G E + +
Sbjct: 197 EMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 227
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 26/221 (11%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGY-----PKN 935
L++L+ ++ R G + ++G SG+GK+T + L + + EG+I I G N
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDTN 94
Query: 936 QATFARVSGYCEQNDIHSPHVTVYESLLFS-----AWLRLSSDIDSKTRKMFVDEVMDLV 990
G Q PH+TV ++ + W R ++ + E++D V
Sbjct: 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAM-------ELLDKV 147
Query: 991 ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
L+ +A D LS Q +R+ IA L P I+ DEPTS LD V+ +
Sbjct: 148 GLKDKAHAYP-----DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVM 202
Query: 1051 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
+ + G T+V H+ E D +L M GG +I G
Sbjct: 203 KQLANEGMTMVVVTHEMGF-AREVGDRVLFMD-GGYIIEEG 241
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQ 401
+SGGQ +RV L K++L DE ++ LD ++ MKQ+ + E T+V +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN--EGMTMVVVTH 217
Query: 402 PAPEAYDLFDNIILLSEGQIVYQGPREKVLE 432
A ++ D ++ + G I+ +G E + +
Sbjct: 218 EMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 105/217 (48%), Gaps = 36/217 (16%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQAT---F 939
+L +++ + G + ++G SG+GK+TL ++ ++ G + I G+ A
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 75
Query: 940 ARVSGYCEQNDI------------HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVM 987
R G Q+++ +P ++V E ++++A L + D S+ R+ +
Sbjct: 76 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREGY----- 129
Query: 988 DLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
N +VG G GLS QR+R+ IA LV NP I+ DE TS LD + ++M
Sbjct: 130 ---------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1048 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
R + + + GRTV+ I + + D +++M++G
Sbjct: 180 RNM-HKICKGRTVI--IIAARLSTVKNADRIIVMEKG 213
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 13/138 (9%)
Query: 294 KPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTG 353
P ++ + A LAG A D++ +L +T+VG+Q G+SGGQ++R+
Sbjct: 101 NPGMSVEKVIYAAKLAG-----AHDFISELRE---GYNTIVGEQGA-GLSGGQRQRIAIA 151
Query: 354 EMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413
LV K+L+ DE ++ LD + I + M ++ + I + L A D I
Sbjct: 152 RALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAARLSTVKNA----DRI 207
Query: 414 ILLSEGQIVYQGPREKVL 431
I++ +G+IV QG +++L
Sbjct: 208 IVMEKGKIVEQGKHKELL 225
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 105/217 (48%), Gaps = 36/217 (16%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQAT---F 939
+L +++ + G + ++G SG+GK+TL ++ ++ G + I G+ A
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWL 81
Query: 940 ARVSGYCEQNDI------------HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVM 987
R G Q+++ +P ++V E ++++A L + D S+ R+ +
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREGY----- 135
Query: 988 DLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
N +VG G GLS QR+R+ IA LV NP I+ DE TS LD + ++M
Sbjct: 136 ---------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1048 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
R + + + GRTV+ I + + D +++M++G
Sbjct: 186 RNM-HKICKGRTVI--IIAARLSTVKNADRIIVMEKG 219
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 13/138 (9%)
Query: 294 KPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTG 353
P ++ + A LAG A D++ +L +T+VG+Q G+SGGQ++R+
Sbjct: 107 NPGMSVEKVIYAAKLAG-----AHDFISELRE---GYNTIVGEQGA-GLSGGQRQRIAIA 157
Query: 354 EMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413
LV K+L+ DE ++ LD + I + M ++ + I + L A D I
Sbjct: 158 RALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAARLSTVKNA----DRI 213
Query: 414 ILLSEGQIVYQGPREKVL 431
I++ +G+IV QG +++L
Sbjct: 214 IVMEKGKIVEQGKHKELL 231
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 17/212 (8%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
L++V+ + G ++MG SG+GK+T+++++ TEG++ I N ++
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC--LDKPTEGEVYIDNIKTNDLDDDELT 78
Query: 944 -------GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLT 996
G+ Q P +T E++ + + + R+ E + + ELE
Sbjct: 79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE--- 135
Query: 997 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVD 1055
+ LS Q++R+ IA L NP II D+PT LD++ +M+ ++ +
Sbjct: 136 -ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE 194
Query: 1056 TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087
G+TVV H ++ F E ++ + G+V
Sbjct: 195 DGKTVVVVTHDINV---ARFGERIIYLKDGEV 223
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQM 387
+SGGQ++RV L ++L D+ + LDS T +I + +K++
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKL 191
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 103/224 (45%), Gaps = 37/224 (16%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKT-GGYTEGDISISGYPK 934
+LR ++ G AL+G SG GK+T++ DVL G+ T G DI++ K
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRK 492
Query: 935 NQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLR--LSSDIDSKTRKMFVDEV-MDLVE 991
N A ++ E LF+ + +S + TR+ V M E
Sbjct: 493 NVAVVSQ------------------EPALFNCTIEENISLGKEGITREEMVAACKMANAE 534
Query: 992 --LEPLTNAMVGLPGVDG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
++ L N L G G LS Q++R+ IA LV NP I+ +DE TS LDA + IV
Sbjct: 535 KFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQ 594
Query: 1048 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
+ + + GRT + H+ S I A +L++ + GQV+ G
Sbjct: 595 QAL-DKAAKGRTTIIIAHRLST-IRNA--DLIISCKNGQVVEVG 634
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 20/199 (10%)
Query: 877 EEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936
E +++L+ +S PG AL+G SG GK+T++ +L + G+I I G
Sbjct: 1088 ERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALL--ERFYDTLGGEIFIDG----- 1140
Query: 937 ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLT 996
+ + ++ + E LF + + + + +V + L +
Sbjct: 1141 ---SEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIH 1197
Query: 997 NAMVGLP-------GVDG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
N + LP G G LS Q++R+ IA LV NP I+ +DE TS LD + +V
Sbjct: 1198 NFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQ 1257
Query: 1048 RTVRNTVDTGRTVVCTIHQ 1066
+ + GRT + H+
Sbjct: 1258 EAL-DRAREGRTCIVIAHR 1275
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 111/267 (41%), Gaps = 45/267 (16%)
Query: 169 VLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTXXXXXXXXXXXXXXXXX 228
+ ++R ++ +I+ILK +S V+P + L+GP G GK+T
Sbjct: 1078 IFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGE-- 1135
Query: 229 XIKYCGHEFKEFVPQRT---CAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEIS 285
I G E K P+ T A +SQ F + ++ E + + G+ +A++
Sbjct: 1136 -IFIDGSEIKTLNPEHTRSQIAIVSQEPTLF-DCSIAENIIY-----GLDPSSVTMAQVE 1188
Query: 286 RREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKL-LGLDICADTMVGDQMRRGVSG 344
+ A I +++ +L G + T VGD+ + +SG
Sbjct: 1189 EAARLANIH-----------------------NFIAELPEGFE----TRVGDRGTQ-LSG 1220
Query: 345 GQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAP 404
GQK+R+ LV K+LL+DE ++ LD+ + + + + + I L
Sbjct: 1221 GQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVM 1280
Query: 405 EAYDLFDNIILLSEGQIVYQGPREKVL 431
A D I ++S G I+ +G +++
Sbjct: 1281 NA----DCIAVVSNGTIIEKGTHTQLM 1303
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 331 DTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHV 390
+T+VGD+ + +SGGQK+R+ LV K+LL+DE ++ LD+ + + + + +
Sbjct: 545 NTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKG 603
Query: 391 LEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVL 431
I L A D II GQ+V G ++
Sbjct: 604 RTTIIIAHRLSTIRNA----DLIISCKNGQVVEVGDHRALM 640
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 101/221 (45%), Gaps = 18/221 (8%)
Query: 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISISGYPKNQ 936
D L+ ++ + G +TA++G +G GK+TL G + + G D Y +
Sbjct: 19 DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKG 78
Query: 937 ATFARVS-GYCEQN-DIHSPHVTVYESLLFSAW-LRLSSDIDSKTRKMFVDEVMDLVELE 993
R S G Q+ D +VY+ + F A ++L D + RK VD + +E
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPED---EIRKR-VDNALKRTGIE 134
Query: 994 PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRN 1052
L + LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ V
Sbjct: 135 HLKDKPTHC-----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEM 189
Query: 1053 TVDTGRTVVCTIHQPSIDIFEAF-DELLLMKRGGQVIYAGP 1092
+ G T++ H IDI + D + +MK G ++ P
Sbjct: 190 QKELGITIIIATH--DIDIVPLYCDNVFVMKEGRVILQGNP 228
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 16/131 (12%)
Query: 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITT 395
D+ +S GQKKRV +LV KVL++DE + GLD +I K + +M L IT
Sbjct: 138 DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITI 197
Query: 396 IVSLLQPAPEAYDLF----DNIILLSEGQIVYQGPREKVL---EFFEYMGFKCPDRKGVA 448
I+ A D+ DN+ ++ EG+++ QG ++V E + + P R G
Sbjct: 198 II-----ATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLP-RIG-- 249
Query: 449 DFLQEVTSKKD 459
L E+ +KD
Sbjct: 250 -HLMEILKEKD 259
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 100/215 (46%), Gaps = 16/215 (7%)
Query: 880 RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGY---PKNQ 936
+Q+L+ ++ + G AL+G SG GK+T + ++ ++ +G +SI G N
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINV 459
Query: 937 ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLV-ELEPL 995
+ G Q + T+ E++ + R +D + + D + +L
Sbjct: 460 RYLREIIGVVSQEPVLFA-TTIAENIRYG---REDVTMDEIEKAVKEANAYDFIMKLPHQ 515
Query: 996 TNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
+ +VG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + +
Sbjct: 516 FDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKAR 573
Query: 1056 TGRTVVCTIHQPSI----DIFEAFDELLLMKRGGQ 1086
GRT + H+ S D+ FD +++++G
Sbjct: 574 EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNH 608
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 12/191 (6%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARV 942
+L+ +S + G AL+G SG GK+T++ +L + G + + G Q +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 943 S---GYCEQNDIHSPHVTVYESLLFSAWLRLSS--DIDSKTRKMFVDEVMDLVELEPLTN 997
G Q I ++ E++ + R+ S +I ++ + + +D L N
Sbjct: 1106 RAQLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFID--SLPDKYN 1162
Query: 998 AMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1057
VG G LS Q++R+ IA LV P I+ +DE TS LD + +V + + G
Sbjct: 1163 TRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DKAREG 1220
Query: 1058 RTVVCTIHQPS 1068
RT + H+ S
Sbjct: 1221 RTCIVIAHRLS 1231
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 112/271 (41%), Gaps = 46/271 (16%)
Query: 167 ENVLGSLRI------LPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTXXXXXXXXX 220
+N+ G+L PS+K ++QILK ++ VK + L+G G GK+T
Sbjct: 382 DNIQGNLEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ--- 437
Query: 221 XXXXXXXXXIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEM 280
+ + P I D+ + VR + +GV ++ +
Sbjct: 438 -----------------RLYDPLDGMVSIDGQDIR--TINVR----YLREIIGVVSQEPV 474
Query: 281 LAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR 340
L + E + D +D KA K + A D+++KL DT+VG++ +
Sbjct: 475 LFATTIAENIRYGREDVTMDEIEKAV-----KEANAYDFIMKL---PHQFDTLVGERGAQ 526
Query: 341 GVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLL 400
+SGGQK+R+ LV K+LL+DE ++ LD+ + + + + I L
Sbjct: 527 -LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRL 585
Query: 401 QPAPEAYDLFDNIILLSEGQIVYQGPREKVL 431
A D I G IV QG ++++
Sbjct: 586 STVRNA----DVIAGFDGGVIVEQGNHDELM 612
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 331 DTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHV 390
+T VGD+ + +SGGQK+R+ LV +LL+DE ++ LD+ + + + + +
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREG 1220
Query: 391 LEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVL 431
I L A D I+++ G++ G +++L
Sbjct: 1221 RTCIVIAHRLSTIQNA----DLIVVIQNGKVKEHGTHQQLL 1257
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 100/215 (46%), Gaps = 16/215 (7%)
Query: 880 RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGY---PKNQ 936
+Q+L+ ++ + G AL+G SG GK+T + ++ ++ +G +SI G N
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINV 459
Query: 937 ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLV-ELEPL 995
+ G Q + T+ E++ + R +D + + D + +L
Sbjct: 460 RYLREIIGVVSQEPVLFA-TTIAENIRYG---REDVTMDEIEKAVKEANAYDFIMKLPHQ 515
Query: 996 TNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
+ +VG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + +
Sbjct: 516 FDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKAR 573
Query: 1056 TGRTVVCTIHQPSI----DIFEAFDELLLMKRGGQ 1086
GRT + H+ S D+ FD +++++G
Sbjct: 574 EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNH 608
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 12/191 (6%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARV 942
+L+ +S + G AL+G SG GK+T++ +L + G + + G Q +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 943 S---GYCEQNDIHSPHVTVYESLLFSAWLRLSS--DIDSKTRKMFVDEVMDLVELEPLTN 997
G Q I ++ E++ + R+ S +I ++ + + +D L N
Sbjct: 1106 RAQLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFID--SLPDKYN 1162
Query: 998 AMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1057
VG G LS Q++R+ IA LV P I+ +DE TS LD + +V + + G
Sbjct: 1163 TRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DKAREG 1220
Query: 1058 RTVVCTIHQPS 1068
RT + H+ S
Sbjct: 1221 RTCIVIAHRLS 1231
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 112/271 (41%), Gaps = 46/271 (16%)
Query: 167 ENVLGSLRI------LPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTXXXXXXXXX 220
+N+ G+L PS+K ++QILK ++ VK + L+G G GK+T
Sbjct: 382 DNIQGNLEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ--- 437
Query: 221 XXXXXXXXXIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEM 280
+ + P I D+ + VR + +GV ++ +
Sbjct: 438 -----------------RLYDPLDGMVSIDGQDIR--TINVR----YLREIIGVVSQEPV 474
Query: 281 LAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR 340
L + E + D +D KA K + A D+++KL DT+VG++ +
Sbjct: 475 LFATTIAENIRYGREDVTMDEIEKAV-----KEANAYDFIMKL---PHQFDTLVGERGAQ 526
Query: 341 GVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLL 400
+SGGQK+R+ LV K+LL+DE ++ LD+ + + + + I L
Sbjct: 527 -LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRL 585
Query: 401 QPAPEAYDLFDNIILLSEGQIVYQGPREKVL 431
A D I G IV QG ++++
Sbjct: 586 STVRNA----DVIAGFDGGVIVEQGNHDELM 612
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 331 DTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHV 390
+T VGD+ + +SGGQK+R+ LV +LL+DE ++ LD+ + + + + +
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREG 1220
Query: 391 LEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVL 431
I L A D I+++ G++ G +++L
Sbjct: 1221 RTCIVIAHRLSTIQNA----DLIVVIQNGKVKEHGTHQQLL 1257
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 11/191 (5%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQAT---- 938
+ +D S G +TAL+G SG+GK+T++ +L + G IS+ G+ Q
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWL 416
Query: 939 FARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLT-N 997
+++ ++ + S ++ E++ + A S + R V + + P N
Sbjct: 417 RSKIGTVSQEPILFS--CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFN 474
Query: 998 AMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1057
+VG GV LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +D G
Sbjct: 475 TVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-G 532
Query: 1058 RTVVCTIHQPS 1068
RTV+ H+ S
Sbjct: 533 RTVLVIAHRLS 543
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 102/255 (40%), Gaps = 46/255 (18%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTXXXXXXXXXXXXXXXXXXIKYCGHEFKEFV 241
++ I +D S + +T L+GP G+GK+T I GH+ ++
Sbjct: 356 EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGT---ISLDGHDIRQLN 412
Query: 242 P---QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPE 298
P + +SQ + F ++ E + + DP
Sbjct: 413 PVWLRSKIGTVSQEPILF-SCSIAENIAYGA-------------------------DDPS 446
Query: 299 IDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV--SGGQKKRVTTGEML 356
TA Q+ + + V + +T+VG+ +GV SGGQK+R+ L
Sbjct: 447 -----SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGE---KGVLLSGGQKQRIAIARAL 498
Query: 357 VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416
+ K+LL+DE ++ LD+ + + + + +++ + I L A + + +L
Sbjct: 499 LKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNA----NMVAVL 554
Query: 417 SEGQIVYQGPREKVL 431
+G+I G E++L
Sbjct: 555 DQGKITEYGKHEELL 569
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 11/191 (5%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQAT---- 938
+ +D S G +TAL+G SG+GK+T++ +L + G IS+ G+ Q
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWL 447
Query: 939 FARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLT-N 997
+++ ++ + S ++ E++ + A S + R V + + P N
Sbjct: 448 RSKIGTVSQEPILFS--CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFN 505
Query: 998 AMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1057
+VG GV LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +D G
Sbjct: 506 TVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-G 563
Query: 1058 RTVVCTIHQPS 1068
RTV+ H S
Sbjct: 564 RTVLVIAHHLS 574
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 102/255 (40%), Gaps = 46/255 (18%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTXXXXXXXXXXXXXXXXXXIKYCGHEFKEFV 241
++ I +D S + +T L+GP G+GK+T I GH+ ++
Sbjct: 387 EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGT---ISLDGHDIRQLN 443
Query: 242 P---QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPE 298
P + +SQ + F ++ E + + DP
Sbjct: 444 PVWLRSKIGTVSQEPILF-SCSIAENIAYGA-------------------------DDPS 477
Query: 299 IDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV--SGGQKKRVTTGEML 356
TA Q+ + + V + +T+VG+ +GV SGGQK+R+ L
Sbjct: 478 -----SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGE---KGVLLSGGQKQRIAIARAL 529
Query: 357 VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416
+ K+LL+DE ++ LD+ + + + + +++ + I L A + + +L
Sbjct: 530 LKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNA----NMVAVL 585
Query: 417 SEGQIVYQGPREKVL 431
+G+I G E++L
Sbjct: 586 DQGKITEYGKHEELL 600
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 113/245 (46%), Gaps = 28/245 (11%)
Query: 851 FQPLSLAFHHVNYSVDMP-AEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTT 909
+ SL H + V++ +++ ++ + L+ ++ G AL+G +G+GK+T
Sbjct: 2 LESFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKST 61
Query: 910 LMDVLAGRKTGGY----TEGDISISGYPKNQATFARVS-----GYCEQNDIHSPHVTVYE 960
+ +L Y EGDI I G KN + R S G Q+ I Y
Sbjct: 62 IAKLL-------YRFYDAEGDIKIGG--KNVNKYNRNSIRSIIGIVPQDTILFNETIKY- 111
Query: 961 SLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLT-NAMVGLPGVDGLSTEQRKRLTIA 1019
++L+ ++ T+ ++ D +E P + +VG G+ LS +R+R+ IA
Sbjct: 112 NILYGKLDATDEEVIKATKSA---QLYDFIEALPKKWDTIVGNKGMK-LSGGERQRIAIA 167
Query: 1020 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1079
L+ +P I+ DE TS LD++ + + V + + RT++ H+ S + + ++
Sbjct: 168 RCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRLS--TISSAESII 224
Query: 1080 LMKRG 1084
L+ +G
Sbjct: 225 LLNKG 229
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Query: 331 DTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHV 390
DT+VG++ + +SGG+++R+ L+ K+++ DE ++ LDS T + K ++ +
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN 204
Query: 391 LEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEF 433
+ I L A ++IILL++G+IV +G + +L+
Sbjct: 205 RTLIIIAHRLSTISSA----ESIILLNKGKIVEKGTHKDLLKL 243
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 125/281 (44%), Gaps = 59/281 (20%)
Query: 842 GPKKGMVLPFQPLSLAFHHVN---------YSVD-----MPAEMKAQGIEEDRLQ----- 882
GP + +V F L+ +F ++ Y + P E+K I+ D +
Sbjct: 292 GPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYND 351
Query: 883 ----LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ-- 936
+L+D++ G A +G+SG GK+TL++++ + T G I I G+
Sbjct: 352 NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSGQILIDGHNIKDFL 409
Query: 937 -ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL 995
+ G +Q++I TV E++L R DE ++VE +
Sbjct: 410 TGSLRNQIGLVQQDNILFSD-TVKENILLG-------------RPTATDE--EVVEAAKM 453
Query: 996 TNA---MVGLP-GVD--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043
NA ++ LP G D LS Q++RL+IA + NP I+ +DE TS LD +
Sbjct: 454 ANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESE 513
Query: 1044 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
+I+ + + + RT + H+ S I A D++++++ G
Sbjct: 514 SIIQEAL-DVLSKDRTTLIVAHRLS-TITHA-DKIVVIENG 551
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 100/252 (39%), Gaps = 49/252 (19%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTXXXXXXXXXXXXXXXXXXIKYCGHEFKEFVP-- 242
ILKD++ ++ +G G GK+T I GH K+F+
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ---ILIDGHNIKDFLTGS 412
Query: 243 -QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
+ + Q+++ F + TV+E + LG +P +
Sbjct: 413 LRNQIGLVQQDNILFSD-TVKENI-----LLG--------------------RPTATDEE 446
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV--SGGQKKRVTTGEMLVGP 359
++A +A A D+++ L DT VG+ RGV SGGQK+R++ + +
Sbjct: 447 VVEAAKMAN-----AHDFIMNLPQ---GYDTEVGE---RGVKLSGGQKQRLSIARIFLNN 495
Query: 360 AKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEG 419
+L++DE ++ LD + I + + + + L A D I+++ G
Sbjct: 496 PPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHA----DKIVVIENG 551
Query: 420 QIVYQGPREKVL 431
IV G +++
Sbjct: 552 HIVETGTHRELI 563
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 94/215 (43%), Gaps = 31/215 (14%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYTEGDISISGY-------P 933
+R++S + G L+G SG GKTT + ++AG + G GD ++ P
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 934 KNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRL--SSDIDSKTRKMFVDEVMDLVE 991
K++ Y PH+TVY+++ F LR +ID + R EV +L+
Sbjct: 79 KDRDIAMVFQSYA-----LYPHMTVYDNIAFPLKLRKVPRQEIDQRVR-----EVAELLG 128
Query: 992 LEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
L L N LS QR+R+ + +V P + MDEP S LDA+ + MR
Sbjct: 129 LTELLNRKP-----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK-LRVRMRAEL 182
Query: 1052 NTVDT--GRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
+ G T + H ++ D + +M RG
Sbjct: 183 KKLQRQLGVTTIYVTHD-QVEAMTMGDRIAVMNRG 216
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 104/257 (40%), Gaps = 52/257 (20%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTXXXXXXXXXXXXXXXXXXIKYCGHEFKE-- 239
++ ++++S VK +LLGP G GKTT Y G +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI----YIGDKLVADP 70
Query: 240 ----FVP--QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGI 293
FVP R A + Q+ + MTV + + F + V
Sbjct: 71 EKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV------------------- 111
Query: 294 KPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTG 353
P EID ++ A +LLGL T + ++ R +SGGQ++RV G
Sbjct: 112 -PRQEIDQRVREVA--------------ELLGL-----TELLNRKPRELSGGQRQRVALG 151
Query: 354 EMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413
+V +V LMDE + LD+ ++ +K++ L +TTI + EA + D I
Sbjct: 152 RAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTI-YVTHDQVEAMTMGDRI 210
Query: 414 ILLSEGQIVYQGPREKV 430
+++ G + G ++V
Sbjct: 211 AVMNRGVLQQVGSPDEV 227
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 100/238 (42%), Gaps = 43/238 (18%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG---YPKNQ--A 937
+L D+S PG + ++G SG GKTTL+ LAG + G+IS+SG + KN
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP--DSGEISLSGKTIFSKNTNLP 76
Query: 938 TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTN 997
R GY Q + PH+TVY ++ + + R
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQR----------------IE 120
Query: 998 AMVGLPGVDGLSTEQRKRLT--------IAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
AM+ L G+ L+ L+ +A L +P +I +DEP S LD + + R
Sbjct: 121 AMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ----LRRQ 176
Query: 1050 VRNTV-----DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP--LGRQSQKL 1100
+R + G++ V H + + D + +MK+G + A P L RQ L
Sbjct: 177 IREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTASPHELYRQPADL 233
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 51/218 (23%), Positives = 95/218 (43%), Gaps = 17/218 (7%)
Query: 878 EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA 937
E+ + L++V+ + G ++ G SG+GK+T ++++ TEG++ I N
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKP--TEGEVYIDNIKTNDL 72
Query: 938 TFARVS-------GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLV 990
++ G+ Q P +T E++ + + R+ E +
Sbjct: 73 DDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXA 132
Query: 991 ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
ELE + LS Q++R+ IA L NP II DEPT LD++ + + +
Sbjct: 133 ELE----ERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLL 188
Query: 1051 RN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087
+ + G+TVV H ++ F E ++ + G+V
Sbjct: 189 KKLNEEDGKTVVVVTHDINV---ARFGERIIYLKDGEV 223
Score = 34.7 bits (78), Expect = 0.37, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQM 387
+SGGQ++RV L ++L DE + LDS T +I + +K++
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKL 191
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 112/254 (44%), Gaps = 41/254 (16%)
Query: 840 GHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTAL 899
G GP L FQ + F +V++S D + L+DVS PG AL
Sbjct: 43 GAGP-----LRFQKGRIEFENVHFSY------------ADGRETLQDVSFTVMPGQTLAL 85
Query: 900 MGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVY 959
+G SGAGK+T++ +L + + G I I G +Q T A + + V
Sbjct: 86 VGPSGAGKSTILRLLF--RFYDISSGCIRIDGQDISQVTQASLRSHI--------GVVPQ 135
Query: 960 ESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLP-------GVDG--LST 1010
+++LF+ ++ +I DEV + + +A++ P G G LS
Sbjct: 136 DTVLFNDT--IADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSG 193
Query: 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1070
+++R+ IA ++ P II +DE TS LD + ++ V RT + H+ S
Sbjct: 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-VCANRTTIVVAHRLSTV 252
Query: 1071 IFEAFDELLLMKRG 1084
+ D++L++K G
Sbjct: 253 V--NADQILVIKDG 264
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 19/107 (17%)
Query: 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSS-------TTFQICKYM 384
T VG++ + +SGG+K+RV ++ ++L+DE ++ LD+S + ++C
Sbjct: 182 TQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANR 240
Query: 385 KQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVL 431
+V ++T+V+ D I+++ +G IV +G E +L
Sbjct: 241 TTIVVAHRLSTVVNA-----------DQILVIKDGCIVERGRHEALL 276
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTT 211
+ L+DVS V P + L+GP GAGK+T
Sbjct: 68 ETLQDVSFTVMPGQTLALVGPSGAGKST 95
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 53.9 bits (128), Expect = 7e-07, Method: Composition-based stats.
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 35/174 (20%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG-----------Y 932
++D+S + G L+G SG GKTT + +AG + T G I I
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEP--TRGQIYIEDNLVADPEKGVFV 79
Query: 933 PKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRL--SSDIDSKTRKMFVDEVMDLV 990
P + A V Q+ PH TVY+++ F LR +ID + R+ V E + L
Sbjct: 80 PPKERDVAXVF----QSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVRE--VAEXLGLT 133
Query: 991 EL---EPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
EL +P LS QR+R+ + ++ P + DEP S LDA+
Sbjct: 134 ELLNRKPRE-----------LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 61/252 (24%), Positives = 99/252 (39%), Gaps = 44/252 (17%)
Query: 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTXXXXXXXXXXXXXXXXXXIK--YCGHEFKEF 240
+ +KD+S +K +LLGP G GKTT E F
Sbjct: 19 VTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVF 78
Query: 241 VP--QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPE 298
VP +R A + Q+ + TV + + F + V P E
Sbjct: 79 VPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKV--------------------PKQE 118
Query: 299 IDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVG 358
ID ++ A + LGL T + ++ R +SGGQ++RV G ++
Sbjct: 119 IDKRVREVA--------------EXLGL-----TELLNRKPRELSGGQRQRVALGRAIIR 159
Query: 359 PAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418
KV L DE + LD+ + +K++ L +TTI + EA D I + ++
Sbjct: 160 RPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIY-VTHDQVEAXTXGDRIAVXNK 218
Query: 419 GQIVYQGPREKV 430
G++ G ++V
Sbjct: 219 GELQQVGTPDEV 230
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 100/206 (48%), Gaps = 15/206 (7%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
LR+++ G AL+G SG+GK+T+ ++ + EG+I + G+ + T A +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLR 416
Query: 944 GYCE--QNDIHSPHVTVYESLLFSAWLRLSSD-IDSKTRKMFVDEVMDLVELEPLTNAMV 1000
++H + TV ++ ++ + S + I+ R + MD + + N +
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYA---MDFIN--KMDNGLD 471
Query: 1001 GLPGVDG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
+ G +G LS QR+R+ IA L+ + I+ +DE TS LD + + + + + R
Sbjct: 472 TVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNR 530
Query: 1059 TVVCTIHQPSIDIFEAFDELLLMKRG 1084
T + H+ S E DE+++++ G
Sbjct: 531 TSLVIAHRLS--TIEKADEIVVVEDG 554
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 107/257 (41%), Gaps = 48/257 (18%)
Query: 181 RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTXXXXXXXXXXXXXXXXXXIKYCGHEFKEF 240
R + L++++ + + L+G G+GK+T I GH+ +E+
Sbjct: 354 RDVPALRNINLKIPAGKTVALVGRSGSGKST---IASLITRFYDIDEGEILMDGHDLREY 410
Query: 241 V---PQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297
+ A +SQN +H TV + ++ R E + SR + E
Sbjct: 411 TLASLRNQVALVSQN-VHLFNDTVANNIAYA--------RTE---QYSREQIE------- 451
Query: 298 EIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV--SGGQKKRVTTGEM 355
+ + A D++ K +D DT++G+ GV SGGQ++R+
Sbjct: 452 -----------EAARMAYAMDFINK---MDNGLDTVIGEN---GVLLSGGQRQRIAIARA 494
Query: 356 LVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415
L+ + +L++DE ++ LD+ + I + ++ I L +A D I++
Sbjct: 495 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKA----DEIVV 550
Query: 416 LSEGQIVYQGPREKVLE 432
+ +G IV +G +LE
Sbjct: 551 VEDGVIVERGTHNDLLE 567
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 91/220 (41%), Gaps = 11/220 (5%)
Query: 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG------Y 932
D +L+ V+ V G + ALMG +GAGK+TL +LAG G+I + G
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73
Query: 933 PKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVEL 992
P +A + Q + P VT+ L + +L ++ F +V +EL
Sbjct: 74 PDERARKGLFLAF--QYPVEVPGVTIANFLRLALQAKLGREVGVAE---FWTKVKKALEL 128
Query: 993 EPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
+ + +G S ++KR I LV P+ +DE SGLD A +V R V
Sbjct: 129 LDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNA 188
Query: 1053 TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
+ H I + D++ +M G V GP
Sbjct: 189 MRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 16/110 (14%)
Query: 338 MRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQM-------VHV 390
+ G SGG+KKR ++LV ++DE +GLD + + + M + +
Sbjct: 140 LNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVI 199
Query: 391 LEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFK 440
I++ +QP D + ++ +G++V G E LE E G++
Sbjct: 200 THYQRILNYIQP--------DKVHVMMDGRVVATGGPELALE-LEAKGYE 240
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 100/234 (42%), Gaps = 46/234 (19%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISISGYPKNQAT 938
+Q+L+ ++ PG +TAL+G +G+GK+T+ +L + TG G + + G P
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEP----- 82
Query: 939 FARVSGYCEQNDIHSPHVTV----YESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP 994
Q D H H V E LLF R + TR ++E+ +
Sbjct: 83 -------LVQYDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESG 134
Query: 995 LTNAMVGLP-GVDG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
+ + G P G D LS QR+ + +A L+ P ++ +D+ TS LDA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLR 194
Query: 1046 VMRTVRNTVD-TGRTVVCTIHQPSI-------------DIFEAFDELLLMKRGG 1085
V R + + + RTV+ HQ S+ + E L LM+RGG
Sbjct: 195 VQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 106/256 (41%), Gaps = 46/256 (17%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTXXXXXXXXXXXXXXXXXXIKYCGHEFKEFV 241
+Q+L+ ++ + P ++T L+GP G+GK+T ++
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHY 90
Query: 242 PQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
A + Q L FG + RE + + G+ TR + EI+ E+G
Sbjct: 91 LHTQVAAVGQEPLLFGR-SFRENIAY-----GL-TRTPTMEEITAVAMESG--------- 134
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAK 361
A D++ G DT VG+ + +SGGQ++ V L+ +
Sbjct: 135 --------------AHDFIS---GFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPR 176
Query: 362 VLLMDEISTGLDSSTTFQICKYMKQMVH-----VLEITTIVSLLQPAPEAYDLFDNIILL 416
+L++D+ ++ LD+ ++ + + + VL IT +SL + A +I+ L
Sbjct: 177 LLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERA-------HHILFL 229
Query: 417 SEGQIVYQGPREKVLE 432
EG + QG +++E
Sbjct: 230 KEGSVCEQGTHLQLME 245
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 98/206 (47%), Gaps = 15/206 (7%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
LR+++ G AL+G SG+GK+T+ ++ + EG I + G+ + T A +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYTLASLR 416
Query: 944 GYCE--QNDIHSPHVTVYESLLFSAWLRLSSD-IDSKTRKMFVDEVMDLVELEPLTNAMV 1000
++H + TV ++ ++ S + I+ R + MD + + N +
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA---MDFIN--KMDNGLD 471
Query: 1001 GLPGVDG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
+ G +G LS QR+R+ IA L+ + I+ +DE TS LD + + + + + R
Sbjct: 472 TIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNR 530
Query: 1059 TVVCTIHQPSIDIFEAFDELLLMKRG 1084
T + H+ S E DE+++++ G
Sbjct: 531 TSLVIAHRLS--TIEQADEIVVVEDG 554
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 108/256 (42%), Gaps = 48/256 (18%)
Query: 181 RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTXXXXXXXXXXXXXXXXXXIKYCGHEFKEF 240
R++ L++++ + + L+G G+GK+T I GH+ +E+
Sbjct: 354 REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH---ILMDGHDLREY 410
Query: 241 VP---QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297
+ A +SQN +H TV + ++ R E E SR + E
Sbjct: 411 TLASLRNQVALVSQN-VHLFNDTVANNIAYA--------RTE---EYSREQIEEA----- 453
Query: 298 EIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV--SGGQKKRVTTGEM 355
+ + A D++ K+ D DT++G+ GV SGGQ++R+
Sbjct: 454 -------------ARMAYAMDFINKM---DNGLDTIIGEN---GVLLSGGQRQRIAIARA 494
Query: 356 LVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415
L+ + +L++DE ++ LD+ + I + ++ I L +A D I++
Sbjct: 495 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQA----DEIVV 550
Query: 416 LSEGQIVYQGPREKVL 431
+ +G IV +G ++L
Sbjct: 551 VEDGIIVERGTHSELL 566
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 90/205 (43%), Gaps = 21/205 (10%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISISGYPKNQATFA 940
L + ++ G + A++G +G GK+TL+D+L G R G E SI P+ F+
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQ---FFS 76
Query: 941 RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000
Y S+L + S+ I++ + D + + L+ L +
Sbjct: 77 SPFAY---------------SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHL 121
Query: 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 1059
LS QR+ + IA + + +I +DEPTS LD IV+ + + + T
Sbjct: 122 AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMT 181
Query: 1060 VVCTIHQPSIDIFEAFDELLLMKRG 1084
VV T HQP+ + A LLL K+
Sbjct: 182 VVFTTHQPNQVVAIANKTLLLNKQN 206
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 308 LAGQKTSLAT-------DYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPA 360
L G+ T + T DY + + LD T + + +SGGQ++ + +
Sbjct: 88 LMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASEC 147
Query: 361 KVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQP 402
K++L+DE ++ LD + + + + +T + + QP
Sbjct: 148 KLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP 189
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 116/294 (39%), Gaps = 51/294 (17%)
Query: 818 GQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIE 877
G+PG + + + G K + F+P + F ++ VD+ E +
Sbjct: 303 GEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVE--- 359
Query: 878 EDRLQLLRDVS--------GVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDI 927
+L++D G R G + ++G +G GKTT + +LAG T G E D+
Sbjct: 360 --YPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL 417
Query: 928 SISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDID-SKTRKMFVDEV 986
+++ P Q A G TVYE L S ID SK F
Sbjct: 418 TVAYKP--QYIKAEYEG------------TVYE---------LLSKIDSSKLNSNFYKTE 454
Query: 987 MDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
+ L+PL + V+ LS + +R+ IA L+ + I +DEP++ LD V
Sbjct: 455 L----LKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 510
Query: 1047 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKL 1100
R +R+ ++ + + I D L +++ G GR + L
Sbjct: 511 SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL--------IVFEGEPGRHGRAL 556
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 20/189 (10%)
Query: 890 VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDIS----ISGYPKN--QATFARVS 943
+ + G++ ++G +G GKTT + +LAG+ E + S I + N Q F R+
Sbjct: 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL- 171
Query: 944 GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMF--VDEVMDLVELEPLTNAMVG 1001
+ +I Y LL A + K R++ VDEV E+
Sbjct: 172 ---KNGEIRPVVKPQYVDLLPKA-------VKGKVRELLKKVDEVGKFEEVVKELELENV 221
Query: 1002 LP-GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
L + LS + +R+ IA L+ F DEP+S LD R V R +R + G+ V
Sbjct: 222 LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAV 281
Query: 1061 VCTIHQPSI 1069
+ H ++
Sbjct: 282 LVVEHDLAV 290
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 320 VLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQ 379
+LK LG+ D V D +SGG+ +RV L+ A + L+DE S LD
Sbjct: 455 LLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLA 509
Query: 380 ICKYMKQMVHVLEITTIV 397
+ + ++ ++ E T +V
Sbjct: 510 VSRAIRHLMEKNEKTALV 527
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 116/294 (39%), Gaps = 51/294 (17%)
Query: 818 GQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIE 877
G+PG + + + G K + F+P + F ++ VD+ E +
Sbjct: 289 GEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVE--- 345
Query: 878 EDRLQLLRDVS--------GVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDI 927
+L++D G R G + ++G +G GKTT + +LAG T G E D+
Sbjct: 346 --YPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL 403
Query: 928 SISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDID-SKTRKMFVDEV 986
+++ P Q A G TVYE L S ID SK F
Sbjct: 404 TVAYKP--QYIKAEYEG------------TVYE---------LLSKIDSSKLNSNFYKTE 440
Query: 987 MDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
+ L+PL + V+ LS + +R+ IA L+ + I +DEP++ LD V
Sbjct: 441 L----LKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 496
Query: 1047 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKL 1100
R +R+ ++ + + I D L +++ G GR + L
Sbjct: 497 SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL--------IVFEGEPGRHGRAL 542
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 20/189 (10%)
Query: 890 VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDIS----ISGYPKN--QATFARVS 943
+ + G++ ++G +G GKTT + +LAG+ E + S I + N Q F R+
Sbjct: 99 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLK 158
Query: 944 GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMF--VDEVMDLVELEPLTNAMVG 1001
E + P Y LL A + K R++ VDEV E+
Sbjct: 159 N-GEIRPVVKPQ---YVDLLPKA-------VKGKVRELLKKVDEVGKFEEVVKELELENV 207
Query: 1002 LP-GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
L + LS + +R+ IA L+ F DEP+S LD R V R +R + G+ V
Sbjct: 208 LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAV 267
Query: 1061 VCTIHQPSI 1069
+ H ++
Sbjct: 268 LVVEHDLAV 276
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 320 VLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQ 379
+LK LG+ D V D +SGG+ +RV L+ A + L+DE S LD
Sbjct: 441 LLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLA 495
Query: 380 ICKYMKQMVHVLEITTIV 397
+ + ++ ++ E T +V
Sbjct: 496 VSRAIRHLMEKNEKTALV 513
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 91/216 (42%), Gaps = 29/216 (13%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFAR 941
+ L +VS V G + G +G+GK+TL+ ++AG T GD+ G K R
Sbjct: 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIRR 78
Query: 942 VSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVG 1001
G Q Y F A R+ ++ + + D D V PL +
Sbjct: 79 NIGIAFQ----------YPEDQFFAE-RVFDEVAFAVKNFYPDR--DPV---PLVKKAME 122
Query: 1002 LPGVDG----------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
G+D LS +++R+ IA +V P I+ +DEP GLD ++R V
Sbjct: 123 FVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVE 182
Query: 1052 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087
G+TV+ H + D ++++++G +V
Sbjct: 183 KWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKV 217
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQ 401
+SGG+K+RV ++V +L++DE GLD + + +++ + + ++S
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS--H 196
Query: 402 PAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFE 435
+ D +++L +G+ V+ G R + LE ++
Sbjct: 197 DIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 230
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 91/216 (42%), Gaps = 29/216 (13%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFAR 941
+ L +VS V G + G +G+GK+TL+ ++AG T GD+ G K R
Sbjct: 23 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIRR 80
Query: 942 VSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVG 1001
G Q Y F A R+ ++ + + D D V PL +
Sbjct: 81 NIGIAFQ----------YPEDQFFAE-RVFDEVAFAVKNFYPDR--DPV---PLVKKAME 124
Query: 1002 LPGVDG----------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
G+D LS +++R+ IA +V P I+ +DEP GLD ++R V
Sbjct: 125 FVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVE 184
Query: 1052 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087
G+TV+ H + D ++++++G +V
Sbjct: 185 KWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKV 219
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQ 401
+SGG+K+RV ++V +L++DE GLD + + +++ + + ++S
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS--H 198
Query: 402 PAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFE 435
+ D +++L +G+ V+ G R + LE ++
Sbjct: 199 DIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 232
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 57/236 (24%), Positives = 107/236 (45%), Gaps = 32/236 (13%)
Query: 867 MPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGD 926
M M+ Q + E L +SG R G + L+G +GAGK+TL+ +AG +G +G
Sbjct: 1 MSIVMQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGS 55
Query: 927 ISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSA--WLRLSSDIDSKTRKMFVD 984
I +G P + +++ +H +++ ++ F+ W L+ KTR ++
Sbjct: 56 IQFAGQPLEAWSATKLA-------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN 108
Query: 985 EVMDLVELEP----LTNAMVGLPGVDGLSTEQRKRLTIAVELV---ANPS--IIFMDEPT 1035
+V + L+ TN + G QR RL V + ANP+ ++ +D+P
Sbjct: 109 DVAGALALDDKLGRSTNQLSG-------GEWQRVRLAAVVLQITPQANPAGQLLLLDQPM 161
Query: 1036 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
+ LD + + + + G +V + H + + A LL +GG+++ +G
Sbjct: 162 NSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASG 215
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 101/225 (44%), Gaps = 11/225 (4%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP--KNQATFA 940
+L+D++ +PG AL+G +G+GKTT++++L + G I + G K + +
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM--RFYDVDRGQILVDGIDIRKIKRSSL 427
Query: 941 RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000
R S D TV E+L + +I + D ++ P V
Sbjct: 428 RSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDH---FIKHLPEGYETV 484
Query: 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
+ LS QR+ L I +ANP I+ +DE TS +D + + + ++ G+T
Sbjct: 485 LTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-GKTS 543
Query: 1061 VCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFE 1105
+ H+ ++ + D L+++ R G+++ G QK Y+E
Sbjct: 544 IIIAHR--LNTIKNAD-LIIVLRDGEIVEMGKHDELIQKRGFYYE 585
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 101/256 (39%), Gaps = 41/256 (16%)
Query: 178 SKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTXXXXXXXXXXXXXXXXXXIKYCGHEF 237
S +K +LKD++ +KP + L+GP G+GKTT +
Sbjct: 363 SYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKI 422
Query: 238 KEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISR-REKEAGIKPD 296
K + + + Q+ + F TV+E + + G E + E ++ + IK
Sbjct: 423 KRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP----GATDEEIKEAAKLTHSDHFIKHL 477
Query: 297 PEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEML 356
PE G +T L + G D+ S GQ++ +
Sbjct: 478 PE-----------GYETVLTDN------GEDL--------------SQGQRQLLAITRAF 506
Query: 357 VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416
+ K+L++DE ++ +D+ T I M +++ I L A D II+L
Sbjct: 507 LANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNA----DLIIVL 562
Query: 417 SEGQIVYQGPREKVLE 432
+G+IV G +++++
Sbjct: 563 RDGEIVEMGKHDELIQ 578
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 54/219 (24%), Positives = 99/219 (45%), Gaps = 30/219 (13%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
L +SG R G + L+G +GAGK+TL+ AG +G +G I +G P + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 944 GYCEQNDIHSPHVTVYESLLFSA--WLRLSSDIDSKTRKMFVDEVMDLVELEP----LTN 997
+H +++ ++ F+ W L+ KTR +++V + L+ TN
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN 125
Query: 998 AMVGLPGVDGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRTVRN 1052
+ G QR RL V + ANP+ ++ +DEP + LD + + + +
Sbjct: 126 QLSG-------GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSA 178
Query: 1053 TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
G +V + H + + A LL +GG+ + +G
Sbjct: 179 LCQQGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 92/199 (46%), Gaps = 18/199 (9%)
Query: 878 EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYTE--GDISISG 931
ED+ +LR +S PG + A+MG +G+GK+TL LAGR+ TGG E G ++
Sbjct: 12 EDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL 70
Query: 932 YPKNQATFARVSGYCEQNDIHSPHVT----VYESLLFSAWLRLSSDIDSKTRKMFVDEVM 987
P+++A + Q + P V+ + +L R +D + ++E +
Sbjct: 71 SPEDRAGEGIFMAF--QYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKI 128
Query: 988 DLVEL-EPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
L+++ E L V + G S ++KR I V P + +DE SGLD A +V
Sbjct: 129 ALLKMPEDLLTRSVNV----GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVV 184
Query: 1047 MRTVRNTVDTGRTVVCTIH 1065
V + D R+ + H
Sbjct: 185 ADGVNSLRDGKRSFIIVTH 203
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 50.8 bits (120), Expect = 6e-06, Method: Composition-based stats.
Identities = 57/236 (24%), Positives = 106/236 (44%), Gaps = 32/236 (13%)
Query: 867 MPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGD 926
M M+ Q + E L +SG R G + L+G +GAGK+TL+ +AG +G +G
Sbjct: 1 MSIVMQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGS 55
Query: 927 ISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSA--WLRLSSDIDSKTRKMFVD 984
I +G P + +++ +H +++ ++ F+ W L+ KTR ++
Sbjct: 56 IQFAGQPLEAWSATKLA-------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN 108
Query: 985 EVMDLVELEP----LTNAMVGLPGVDGLSTEQRKRLTIAVELV---ANPS--IIFMDEPT 1035
+V + L+ TN + G QR RL V + ANP+ ++ +D+P
Sbjct: 109 DVAGALALDDKLGRSTNQLSG-------GEWQRVRLAAVVLQITPQANPAGQLLLLDQPM 161
Query: 1036 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
LD + + + + G +V + H + + A LL +GG+++ +G
Sbjct: 162 CSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASG 215
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
Length = 267
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 92/199 (46%), Gaps = 18/199 (9%)
Query: 878 EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYTE--GDISISG 931
ED+ +LR +S PG + A+MG +G+GK+TL LAGR+ TGG E G ++
Sbjct: 31 EDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL 89
Query: 932 YPKNQATFARVSGYCEQNDIHSPHVT----VYESLLFSAWLRLSSDIDSKTRKMFVDEVM 987
P+++A + Q + P V+ + +L R +D + ++E +
Sbjct: 90 SPEDRAGEGIFMAF--QYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKI 147
Query: 988 DLVEL-EPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
L+++ E L V + G S ++KR I V P + +DE SGLD A +V
Sbjct: 148 ALLKMPEDLLTRSVNV----GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVV 203
Query: 1047 MRTVRNTVDTGRTVVCTIH 1065
V + D R+ + H
Sbjct: 204 ADGVNSLRDGKRSFIIVTH 222
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 50.4 bits (119), Expect = 7e-06, Method: Composition-based stats.
Identities = 54/219 (24%), Positives = 99/219 (45%), Gaps = 30/219 (13%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
L +SG R G + L+G +GAGK+TL+ AG +G +G I +G P + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 944 GYCEQNDIHSPHVTVYESLLFSA--WLRLSSDIDSKTRKMFVDEVMDLVELEP----LTN 997
+H +++ ++ F+ W L+ KTR +++V + L+ TN
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN 125
Query: 998 AMVGLPGVDGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRTVRN 1052
+ G QR RL V + ANP+ ++ +DEP + LD + + + +
Sbjct: 126 QLSG-------GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSA 178
Query: 1053 TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
G +V + H + + A LL +GG+ + +G
Sbjct: 179 LSQQGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 95/209 (45%), Gaps = 7/209 (3%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFA 940
+Q L +VS G + ++G SGAGK+TL+ + + TEG + + G + +
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELTTLSES 75
Query: 941 RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000
++ Q + H + S + L ++D+ + V +L+ L L +
Sbjct: 76 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD 135
Query: 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 1059
P LS Q++R+ IA L +NP ++ DE TS LD ++ +++ G T
Sbjct: 136 SYPS--NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLT 193
Query: 1060 VVCTIHQPSIDIFEAFDELLLMKRGGQVI 1088
++ H+ +D+ + + + + G++I
Sbjct: 194 ILLITHE--MDVVKRICDCVAVISNGELI 220
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITT 395
D +SGGQK+RV L KVLL DE ++ LD +TT I + +K + L + T
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL-T 193
Query: 396 IVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEY 436
I+ + + D + ++S G+++ Q + V E F +
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQ---DTVSEVFSH 231
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/190 (23%), Positives = 84/190 (44%), Gaps = 5/190 (2%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFA 940
+Q L +VS G + ++G SGAGK+TL+ + + TEG + + G + +
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELTTLSES 98
Query: 941 RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000
++ Q H + S + L ++D+ + V +L+ L L +
Sbjct: 99 ELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD 158
Query: 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 1059
P LS Q++R+ IA L +NP ++ D+ TS LD ++ +++ G T
Sbjct: 159 SYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLT 216
Query: 1060 VVCTIHQPSI 1069
++ H+ +
Sbjct: 217 ILLITHEXDV 226
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITT 395
D +SGGQK+RV L KVLL D+ ++ LD +TT I + +K + L + T
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL-T 216
Query: 396 IVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEY 436
I+ + + D + ++S G+++ Q + V E F +
Sbjct: 217 ILLITHEXDVVKRICDCVAVISNGELIEQ---DTVSEVFSH 254
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 14/186 (7%)
Query: 890 VFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYTEGDISISGYPKN--QATFARVS 943
V + G + ++G +G GK+T + +LAG+ G D I + N Q F ++
Sbjct: 43 VVKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102
Query: 944 GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLP 1003
+ + +V + + + L D + ++EV+ +ELE + +
Sbjct: 103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGK---LEEVVKALELENVLEREI--- 156
Query: 1004 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1063
LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+
Sbjct: 157 --QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVV 214
Query: 1064 IHQPSI 1069
H ++
Sbjct: 215 EHDLAV 220
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 28/196 (14%)
Query: 889 GVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISISGYPKNQATFARVSGYC 946
G + G + ++G +G GKTT + LAG T G E D++++ P Q A G
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKP--QYIKADYEG-- 362
Query: 947 EQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVD 1006
TVYE L +L+S+ KT + ++DL + E V+
Sbjct: 363 ----------TVYELLSKIDASKLNSNF-YKTELLKPLGIIDLYDRE-----------VN 400
Query: 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1066
LS + +R+ IA L+ + I +DEP++ LD V R +R+ + +
Sbjct: 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Query: 1067 PSIDIFEAFDELLLMK 1082
+ I D L + +
Sbjct: 461 DVLXIDYVSDRLXVFE 476
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 320 VLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQ 379
+LK LG+ D V + +SGG+ +RV L+ A + L+DE S LD
Sbjct: 385 LLKPLGIIDLYDREVNE-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLA 439
Query: 380 ICKYMKQMVHVLEITTIV 397
+ + ++ + E T +V
Sbjct: 440 VSRAIRHLXEKNEKTALV 457
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 98/234 (41%), Gaps = 46/234 (19%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISISGYPKNQAT 938
+Q+L+ ++ PG +TAL+G +G+GK+T+ +L + TGG + + G P
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG----KVLLDGEP----- 82
Query: 939 FARVSGYCEQNDIHSPHVTV----YESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP 994
Q D H H V E LLF R + TR ++E+ +
Sbjct: 83 -------LVQYDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESG 134
Query: 995 LTNAMVGLP-GVDG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
+ + G P G D LS QR+ + +A L+ P ++ +D TS LDA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLR 194
Query: 1046 VMRTVRNTVD-TGRTVVCTIHQPSI-------------DIFEAFDELLLMKRGG 1085
V R + + + RTV+ Q S+ + E L LM+RGG
Sbjct: 195 VQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 105/256 (41%), Gaps = 46/256 (17%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTXXXXXXXXXXXXXXXXXXIKYCGHEFKEFV 241
+Q+L+ ++ + P ++T L+GP G+GK+T ++
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHY 90
Query: 242 PQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
A + Q L FG + RE + + G+ TR + EI+ E+G
Sbjct: 91 LHTQVAAVGQEPLLFGR-SFRENIAY-----GL-TRTPTMEEITAVAMESG--------- 134
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAK 361
A D++ G DT VG+ + +SGGQ++ V L+ +
Sbjct: 135 --------------AHDFIS---GFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPR 176
Query: 362 VLLMDEISTGLDSSTTFQICKYMKQMVH-----VLEITTIVSLLQPAPEAYDLFDNIILL 416
+L++D ++ LD+ ++ + + + VL IT +SL + A +I+ L
Sbjct: 177 LLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERA-------HHILFL 229
Query: 417 SEGQIVYQGPREKVLE 432
EG + QG +++E
Sbjct: 230 KEGSVCEQGTHLQLME 245
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 31/174 (17%)
Query: 899 LMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS-GYCEQNDIHSPHVT 957
++G +GAGKT ++++AG G I + G + + + QN PH+
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMN 88
Query: 958 VYESLLFSAWLRLSSD---IDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRK 1014
V ++L F ++ D + R + ++ ++D PLT LS +++
Sbjct: 89 VKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDR---NPLT-----------LSGGEQQ 134
Query: 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1068
R+ +A LV NP I+ +DEP S LD R T + R ++ +H+ +
Sbjct: 135 RVALARALVTNPKILLLDEPLSALDPR-----------TQENAREMLSVLHKKN 177
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 326 LDICADTMVGDQMRRG---VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICK 382
LD D + + R +SGG+++RV LV K+LL+DE + LD T + +
Sbjct: 109 LDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQ-ENAR 167
Query: 383 YMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLE 432
M ++H T++ + EA + D I ++ +G+++ G E++ E
Sbjct: 168 EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 94/221 (42%), Gaps = 13/221 (5%)
Query: 880 RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATF 939
+ L VS G +T ++G +G+GK+TL++V+ G EG +
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDITNKEP 76
Query: 940 ARVSGYCEQNDIHSPH----VTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVE---- 991
A + Y +P +TV E+LL S ++S K ++ + ++VE
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFK 136
Query: 992 -LEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
LE L + + LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 137 ILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHV 196
Query: 1051 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
G T + H+ +DI + + L + GQ+I G
Sbjct: 197 LELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEG 235
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 320 VLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQ 379
+L+ L L D G+ +SGGQ K V G L+ K+++MDE G+
Sbjct: 137 ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 380 ICKYMKQMVHVLEIT----TIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREK 429
I HVLE+ T + + + D++ ++ GQI+ +G E+
Sbjct: 192 IFN------HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1066
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQ 401
+SGGQ++RV+ L VLL DE ++ LD ++ + M+Q+ E T+V +
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTH 211
Query: 402 PAPEAYDLFDNIILLSEGQIVYQGPREKV 430
A + ++I L +G+I +G E+V
Sbjct: 212 EMGFARHVSSHVIFLHQGKIEEEGDPEQV 240
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 98/234 (41%), Gaps = 46/234 (19%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISISGYPKNQAT 938
+Q+L+ ++ PG +TAL+G +G+GK+T+ +L + TG G + + G P
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEP----- 82
Query: 939 FARVSGYCEQNDIHSPHVTV----YESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP 994
Q D H H V E LLF R + TR ++E+ +
Sbjct: 83 -------LVQYDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESG 134
Query: 995 LTNAMVGLP-GVDG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
+ + G P G D L+ QR+ + +A L+ P ++ +D TS LDA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLR 194
Query: 1046 VMRTVRNTVD-TGRTVVCTIHQPSI-------------DIFEAFDELLLMKRGG 1085
V R + + + RTV+ Q S+ + E L LM+RGG
Sbjct: 195 VQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 104/256 (40%), Gaps = 46/256 (17%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTXXXXXXXXXXXXXXXXXXIKYCGHEFKEFV 241
+Q+L+ ++ + P ++T L+GP G+GK+T ++
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHY 90
Query: 242 PQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
A + Q L FG + RE + + G+ TR + EI+ E+G
Sbjct: 91 LHTQVAAVGQEPLLFGR-SFRENIAY-----GL-TRTPTMEEITAVAMESG--------- 134
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAK 361
A D++ G DT VG+ + ++ GQ++ V L+ +
Sbjct: 135 --------------AHDFIS---GFPQGYDTEVGETGNQ-LAVGQRQAVALARALIRKPR 176
Query: 362 VLLMDEISTGLDSSTTFQICKYMKQMVH-----VLEITTIVSLLQPAPEAYDLFDNIILL 416
+L++D ++ LD+ ++ + + + VL IT +SL + A +I+ L
Sbjct: 177 LLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERA-------HHILFL 229
Query: 417 SEGQIVYQGPREKVLE 432
EG + QG +++E
Sbjct: 230 KEGSVCEQGTHLQLME 245
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 95/209 (45%), Gaps = 7/209 (3%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFA 940
+Q L +VS G + ++G SGAGK+TL+ + + TEG + + G + +
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELTTLSES 98
Query: 941 RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000
++ Q + H + S + L ++D+ + V +L+ L L +
Sbjct: 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD 158
Query: 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 1059
P LS Q++R+ IA L +NP ++ D+ TS LD ++ +++ G T
Sbjct: 159 SYPS--NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLT 216
Query: 1060 VVCTIHQPSIDIFEAFDELLLMKRGGQVI 1088
++ H+ +D+ + + + + G++I
Sbjct: 217 ILLITHE--MDVVKRICDCVAVISNGELI 243
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITT 395
D +SGGQK+RV L KVLL D+ ++ LD +TT I + +K + L + T
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL-T 216
Query: 396 IVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEY 436
I+ + + D + ++S G+++ Q + V E F +
Sbjct: 217 ILLITHEMDVVKRICDCVAVISNGELIEQ---DTVSEVFSH 254
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 19/213 (8%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFAR 941
++L+ +S + G +++G SG+GK+TL+ +L TEG + + G +
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILG--LLDAPTEGKVFLEGKEVDYTNEKE 75
Query: 942 VS-------GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP 994
+S G+ Q P +T E+++ ++K R ++ L EL
Sbjct: 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL-----LSELG- 129
Query: 995 LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
L + + P LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 130 LGDKLSRKPY--ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187
Query: 1055 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087
+ G ++V H+ ++ E L MK G V
Sbjct: 188 EGGTSIVMVTHER--ELAELTHRTLEMKDGKVV 218
Score = 35.0 bits (79), Expect = 0.31, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 14/108 (12%)
Query: 318 DYVLKLLGLDICADTMVGDQMRRG---VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDS 374
+Y+L LGL GD++ R +SGG+++RV L +L DE + LDS
Sbjct: 122 EYLLSELGL--------GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDS 173
Query: 375 STTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIV 422
+ T ++ M + + E T + ++ E +L + + +G++V
Sbjct: 174 ANTKRV---MDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVV 218
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 58/246 (23%), Positives = 104/246 (42%), Gaps = 45/246 (18%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFAR 941
++L+ +S G + L+G +GAGKTT + + IS K +
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRI---------------ISTLIKPSSGIVT 73
Query: 942 VSGYCEQNDIHSPH------------VTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDL 989
V G +N + PH Y ++ +LR + + + E+ ++
Sbjct: 74 VFG---KNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS----EIEEM 126
Query: 990 VELEPLTNAMVGLPGVDGLSTEQR---KRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
VE A +G D +ST + ++L IA L+ NP + +DEPTSGLD A V
Sbjct: 127 VE-RATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 185
Query: 1047 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGR-----QSQKLV 1101
+ ++ G T++ + H +++ D + L+ G ++ G + ++Q +
Sbjct: 186 RKILKQASQEGLTILVSSHN-MLEVEFLCDRIALI-HNGTIVETGTVEELKERYKAQNIE 243
Query: 1102 EYFEAV 1107
E FE V
Sbjct: 244 EVFEEV 249
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 60/268 (22%), Positives = 107/268 (39%), Gaps = 44/268 (16%)
Query: 170 LGSLRILPSKKR--KIQILKDVSGLVKPSRMTLLLGPPGAGKTTXXXXXXXXXXXXXXXX 227
+G++ + +KR K +ILK +S ++ + L+GP GAGKTT
Sbjct: 13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTT----------TLRIIS 62
Query: 228 XXIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRR 287
IK P + FG+ V E +E+ IS
Sbjct: 63 TLIK----------PSSGIVTV------FGKNVVEEP-------------HEVRKLISYL 93
Query: 288 EKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQK 347
+EAG + + Y++ A +S + +++ + D++ G +
Sbjct: 94 PEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVR 153
Query: 348 KRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAY 407
K + ++V P ++ ++DE ++GLD ++ K +KQ E TI+ E
Sbjct: 154 KLLIARALMVNP-RLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILVSSHNMLEVE 210
Query: 408 DLFDNIILLSEGQIVYQGPREKVLEFFE 435
L D I L+ G IV G E++ E ++
Sbjct: 211 FLCDRIALIHNGTIVETGTVEELKERYK 238
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 94/206 (45%), Gaps = 15/206 (7%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ---ATFA 940
L VS G AL+G SG+GK+T+ ++ + G I + G+
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFT--RFYDVDSGSICLDGHDVRDYKLTNLR 416
Query: 941 RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSD-IDSKTRKMFVDEVMDLVELEPL-TNA 998
R QN +H + T+ ++ ++A + + I+ R+ M+ +E P +
Sbjct: 417 RHFALVSQN-VHLFNDTIANNIAYAAEGEYTREQIEQAARQA---HAMEFIENMPQGLDT 472
Query: 999 MVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
++G G LS QR+R+ IA L+ + ++ +DE TS LD + + + + + +
Sbjct: 473 VIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL-DELQKNK 530
Query: 1059 TVVCTIHQPSIDIFEAFDELLLMKRG 1084
TV+ H+ S E DE+L++ G
Sbjct: 531 TVLVIAHRLS--TIEQADEILVVDEG 554
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 331 DTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHV 390
DT++G+ +SGGQ++RV L+ A VL++DE ++ LD+ + I + ++
Sbjct: 471 DTVIGEN-GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN 529
Query: 391 LEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVL 431
+ I L +A D I+++ EG+I+ +G +L
Sbjct: 530 KTVLVIAHRLSTIEQA----DEILVVDEGEIIERGRHADLL 566
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 47.0 bits (110), Expect = 8e-05, Method: Composition-based stats.
Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 31/217 (14%)
Query: 899 LMGVSGAGKTTLMDVLAG---RKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPH 955
L+G +GAGK+ ++++AG G I+ P + R G+ Q+ PH
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFPH 84
Query: 956 VTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKR 1015
++VY ++ + LR ++ R + E + + L A LS +R+R
Sbjct: 85 LSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPAR--------LSGGERQR 134
Query: 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA- 1074
+ +A LV P ++ +DEP S +D + ++M +R R I + D+ EA
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRF---VQREFDVPILHVTHDLIEAA 191
Query: 1075 --FDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPG 1109
DE+ +M G+++ G KL E F A G
Sbjct: 192 MLADEVAVM-LNGRIVEKG-------KLKELFSAKNG 220
Score = 34.3 bits (77), Expect = 0.58, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQ 401
+SGG+++RV LV ++LL+DE + +D T + + ++ + ++ I+ +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV-PILHVTH 185
Query: 402 PAPEAYDLFDNIILLSEGQIVYQGPREKVLEFF 434
EA L D + ++ G+IV +G K+ E F
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKG---KLKELF 215
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSL 399
R SGGQK+R++ LV KVL++D+ ++ +D T +I +K+ + TT + +
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKR--YTKGCTTFI-I 534
Query: 400 LQPAPEAYDLFDNIILLSEGQIVYQGPREKVLE 432
Q P A L D I++L EG++ G +++LE
Sbjct: 535 TQKIPTAL-LADKILVLHEGKVAGFGTHKELLE 566
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 79/171 (46%), Gaps = 21/171 (12%)
Query: 878 EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA 937
E+ +L V+ +PG L A++G +G+GK+TLM+++ + G + +
Sbjct: 353 ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP--RLIDPERGRVEVDELDVRTV 410
Query: 938 TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTN 997
+ G+ P E++LFS ++ ++ DE+++ ++ + +
Sbjct: 411 KLKDLRGHISA----VPQ----ETVLFSGTIK--ENLKWGREDATDDEIVEAAKIAQIHD 460
Query: 998 AMVGLP---------GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
++ LP G S Q++RL+IA LV P ++ +D+ TS +D
Sbjct: 461 FIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 90/213 (42%), Gaps = 32/213 (15%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFA-- 940
+L ++S PG L+G +G+GK+TL+ TEG+I I G + T
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQW 92
Query: 941 -RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAM 999
+ G Q + +FS R + D ++ + +V D V L +
Sbjct: 93 RKAFGVIPQ-----------KVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQ- 140
Query: 1000 VGLPG------VDG---LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
PG VDG LS ++ + +A +++ I+ +DEP++ LD I+ RT+
Sbjct: 141 --FPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTL 198
Query: 1051 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1083
+ ++C + I+ D+ L+++
Sbjct: 199 KQAFADCTVILC---EARIEAMLECDQFLVIEE 228
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 12/110 (10%)
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQ 401
+S G K+ + ++ AK+LL+DE S LD T I + +KQ V L +
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF----ADCTVILCE 211
Query: 402 PAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFL 451
EA D +++ E ++ + +LE + Y P + VA F+
Sbjct: 212 ARIEAMLECDQFLVIEENKVRQ---YDSILELYHY-----PADRFVAGFI 253
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 13/207 (6%)
Query: 894 GVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHS 953
G +T ++G +G+GK+TL++V+ G EG + A + Y +
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDITNKEPAELYHYGIVRTFQT 90
Query: 954 PH----VTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVE-----LEPLTNAMVGLPG 1004
P +TV E+LL S ++S K ++ + ++VE LE L + +
Sbjct: 91 PQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK 150
Query: 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1064
LS Q K + I L+ NP +I MDEP +G+ A + V G T +
Sbjct: 151 AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIE 210
Query: 1065 HQPSIDIFEAFDELLLMKRGGQVIYAG 1091
H+ +DI + + L + GQ+I G
Sbjct: 211 HR--LDIVLNYIDHLYVMFNGQIIAEG 235
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 320 VLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQ 379
+L+ L L D G+ +SGGQ K V G L+ K+++MDE G+
Sbjct: 137 ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 380 ICKYMKQMVHVLEIT----TIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREK 429
I HVLE+ T + + + D++ ++ GQI+ +G E+
Sbjct: 192 IFN------HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette
From An Abc Transporter
Length = 257
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 56/220 (25%), Positives = 94/220 (42%), Gaps = 13/220 (5%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFA 940
+ L VS G +T ++G +G+GK+TL++V+ G EG + A
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDITNKEPA 77
Query: 941 RVSGYCEQNDIHSPH----VTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVE----- 991
+ Y +P +TV E+LL S ++S K ++ + ++VE
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 992 LEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
LE L + + LS Q K + I L+ NP +I MD+P +G+ A + V
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVL 197
Query: 1052 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
G T + H+ +DI + + L + GQ+I G
Sbjct: 198 ELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEG 235
Score = 31.2 bits (69), Expect = 4.4, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 320 VLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQ 379
+L+ L L D G+ +SGGQ K V G L+ K+++MD+ G+
Sbjct: 137 ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHD 191
Query: 380 ICKYMKQMVHVLEIT----TIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREK 429
I HVLE+ T + + + D++ ++ GQI+ +G E+
Sbjct: 192 IFN------HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 59/252 (23%), Positives = 110/252 (43%), Gaps = 25/252 (9%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARV 942
+L+ +S G L G++GAGKTTL+++L + T G +++ G + ++
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKXPGKVGYSAE 93
Query: 943 S-----GYCEQNDIHSPH-----VTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVEL 992
+ G+ + + + V S F + + + DID + R +++ LV
Sbjct: 94 TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKS-IGVYQDIDDEIRNE-AHQLLKLVGX 151
Query: 993 EPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD--ARAAAIVMRTV 1050
+G LST +++R+ IA L P ++ +DEP +GLD AR + + +
Sbjct: 152 SAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDS 206
Query: 1051 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGR--QSQKLVEYFEAVP 1108
+ + H +I F ++LL+K GQ I G + S+ +F+
Sbjct: 207 LSDSYPTLAXIYVTHFIE-EITANFSKILLLK-DGQSIQQGAVEDILTSENXSRFFQKNV 264
Query: 1109 GVPRITNGYNPA 1120
V R N ++ A
Sbjct: 265 AVQRWNNRFSXA 276
Score = 40.4 bits (93), Expect = 0.007, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 320 VLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQ 379
+LKL+G A +G +S G+K+RV L G +VL++DE + GLD
Sbjct: 145 LLKLVGXSAKAQQYIG-----YLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARES 199
Query: 380 ICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVL 431
+ + + + + E F I+LL +GQ + QG E +L
Sbjct: 200 LLSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
Length = 538
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 104/241 (43%), Gaps = 29/241 (12%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDI 951
+ + ++G +G GKTT++ +LAG + + + + G + F Y ++
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV-GKDEVLKRFRGKEIYNYFKEL 81
Query: 952 HSPHVTVYESLLF----SAWLR-----LSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGL 1002
+S + + + + S +L+ + + ID + +K DEV +L+ + L N +
Sbjct: 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKK---DEVKELLNMTNLWNKDANI 138
Query: 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1062
GL +RL +A L+ + D+P+S LD R + + +R + + V+
Sbjct: 139 LSGGGL-----QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-KNKYVIV 192
Query: 1063 TIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATW 1122
H + + + +L+ + G +Y GR S+ + A G+ GY PA
Sbjct: 193 VDH--DLIVLDYLTDLIHIIYGESSVY----GRVSKS----YAARVGINNFLKGYLPAEN 242
Query: 1123 M 1123
M
Sbjct: 243 M 243
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 102/253 (40%), Gaps = 38/253 (15%)
Query: 840 GHGPKKGMVLPFQPLSLAFHHV---NYSVDMPAEMKAQGIEED--RLQLLRDVSGVFRPG 894
G+ P + M + + V + S D+ +MK I + QL+ D +G + G
Sbjct: 236 GYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVD-NGEAKEG 294
Query: 895 VLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDIS----ISGYPKNQATFARVSGYCEQND 950
+ ++G +G GKTT +L G T EG ++ I Y K Q F G +Q
Sbjct: 295 EIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEKQILSY-KPQRIFPNYDGTVQQ-- 349
Query: 951 IHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLST 1010
+L +S T F +EV + L L + V+ LS
Sbjct: 350 ----------------YLENASKDALSTSSWFFEEVTKRLNLHRLLES-----NVNDLSG 388
Query: 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI-HQPSI 1069
+ ++L IA L + +D+P+S LD IV + ++ + V I H SI
Sbjct: 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSI 448
Query: 1070 DIFEAFDELLLMK 1082
+ A D +++ K
Sbjct: 449 HDYIA-DRIIVFK 460
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
Length = 266
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 28/243 (11%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTE----GDISISGYPKNQAT 938
L+ DVS G + A++G +GAGK+TL+ +L G + + E G S PK
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPK---A 82
Query: 939 FARVSGYCEQNDIHSPHVTVYESL-LFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTN 997
AR Q + +V E + + A S D + + M + + L + +
Sbjct: 83 LARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRV- 141
Query: 998 AMVGLPGVDGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVR 1051
LS +++R+ +A L P +F+DEPTS LD +R +R
Sbjct: 142 ----------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLR 191
Query: 1052 N-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLG-RQSQKLVEYFEAVPG 1109
T V C +H ++ A D ++L+ +G V P ++ L ++++A G
Sbjct: 192 QLTRQEPLAVCCVLHDLNLAALYA-DRIMLLAQGKLVACGTPEEVLNAETLTQWYQADLG 250
Query: 1110 VPR 1112
V R
Sbjct: 251 VSR 253
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 52/255 (20%), Positives = 105/255 (41%), Gaps = 46/255 (18%)
Query: 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTXXXXXXXXXXXXXXXXXXIKYCGHEFKEFVP 242
+ +L+ ++ ++P +T L+GP G+GK+T +++
Sbjct: 30 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 89
Query: 243 QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAY 302
R A + Q FG +++E + + G+ P ++
Sbjct: 90 HRQVAAVGQEPQVFGR-SLQENIAY------------------------GLTQKPTMEEI 124
Query: 303 MKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKV 362
A +G + ++ GL DT V D+ +SGGQ++ V L+ V
Sbjct: 125 TAAAVKSGAHSFIS--------GLPQGYDTEV-DEAGSQLSGGQRQAVALARALIRKPCV 175
Query: 363 LLMDEISTGLDSSTTFQICKYMKQMVH-----VLEITTIVSLLQPAPEAYDLFDNIILLS 417
L++D+ ++ LD+++ Q+ + + + VL IT +SL++ A D+I+ L
Sbjct: 176 LILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQA-------DHILFLE 228
Query: 418 EGQIVYQGPREKVLE 432
G I G ++++E
Sbjct: 229 GGAIREGGTHQQLME 243
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 27/215 (12%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISISGYPKNQATFA 940
+L+ ++ RPG +TAL+G +G+GK+T+ +L + TG G + + G P Q
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG----GQLLLDGKPLPQY--- 84
Query: 941 RVSGYCEQNDIHSPHVTV-YESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAM 999
E +H V E +F L+ + T+K ++E+ + +
Sbjct: 85 ------EHRYLHRQVAAVGQEPQVFGRSLQ-ENIAYGLTQKPTMEEITAAAVKSGAHSFI 137
Query: 1000 VGLP-GVDG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
GLP G D LS QR+ + +A L+ P ++ +D+ TS LDA + V + +
Sbjct: 138 SGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLL 197
Query: 1051 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085
+ + V I Q + + E D +L ++ G
Sbjct: 198 YESPERYSRSVLLITQ-HLSLVEQADHILFLEGGA 231
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 14/172 (8%)
Query: 894 GVLTALMGVSGAGKTTLMDVLAG---RKTGGYTEGDISISGYPKNQATFARVSGYCEQND 950
G + L+G +GAGKTT + +AG + G I+ P + ++ E
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 951 IHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-LTNAMVGLPGVDGLS 1009
I P +TVYE+L A+ R K ++ ++ + L P L + L G LS
Sbjct: 92 IF-PELTVYENLXXGAYNR-------KDKEGIKRDLEWIFSLFPRLKERLKQLGGT--LS 141
Query: 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
+++ L I L + P ++ DEP+ GL + V ++ G T++
Sbjct: 142 GGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Score = 37.0 bits (84), Expect = 0.072, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 337 QMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDS---STTFQICKYMKQMVHVLEI 393
Q+ +SGG+++ + G L K+L DE S GL S F++ + + Q E
Sbjct: 135 QLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQ-----EG 189
Query: 394 TTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLE 432
TTI+ + Q A A + +L GQIV +G ++L+
Sbjct: 190 TTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 97/217 (44%), Gaps = 25/217 (11%)
Query: 877 EEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936
EE +L+D++ G L A+ G +GAGKT+L+ ++ G +EG I SG
Sbjct: 29 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG----- 81
Query: 937 ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSD---IDSKTRKMFVDEVMDLVELE 993
R+S +C Q P T+ E+++F +S D S + ++E D+ +
Sbjct: 82 ----RIS-FCSQFSWIMPG-TIKENIIFG----VSYDEYRYRSVIKACQLEE--DISKFA 129
Query: 994 PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
N ++G G+ LS QR R+++A + + + +D P LD + +
Sbjct: 130 EKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 188
Query: 1054 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090
+ +T + + ++ + D++L++ G Y
Sbjct: 189 LMANKTRILVTSK--MEHLKKADKILILHEGSSYFYG 223
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 96/210 (45%), Gaps = 24/210 (11%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARV 942
+L+D++ G L A+ G +GAGKT+L+ ++ G +EG I SG R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG---------RI 101
Query: 943 SGYCEQNDIHSPHVTVYESLLFSAW--LRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000
S +C QN P T+ E+++ ++ R S I + ++E D+ + N ++
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSYDEYRYRSVI----KACQLEE--DISKFAEKDNIVL 153
Query: 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
G G+ LS QR R+++A + + + +D P LD + + + +T
Sbjct: 154 GEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 1061 VCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090
+ + ++ + D++L++ G Y
Sbjct: 213 ILVTSK--MEHLKKADKILILHEGSSYFYG 240
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQI-----CKYMKQMVHVLEITTI 396
+SGGQ+ R++ + A + L+D LD T +I CK M +L +T+
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL-VTSK 218
Query: 397 VSLLQPAPEAYDLFDNIILLSEGQIVYQG 425
+ L+ A D I++L EG + G
Sbjct: 219 MEHLKKA-------DKILILHEGSSYFYG 240
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 96/210 (45%), Gaps = 24/210 (11%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARV 942
+L+D++ G L A+ G +GAGKT+L+ ++ G +EG I SG R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG---------RI 101
Query: 943 SGYCEQNDIHSPHVTVYESLLFSAW--LRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000
S +C QN P T+ E+++ ++ R S I + ++E D+ + N ++
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSYDEYRYRSVI----KACQLEE--DISKFAEKDNIVL 153
Query: 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
G G+ LS QR R+++A + + + +D P LD + + + +T
Sbjct: 154 GEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 1061 VCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090
+ + ++ + D++L++ G Y
Sbjct: 213 ILVTSK--MEHLKKADKILILHEGSSYFYG 240
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQI-----CKYMKQMVHVLEITTI 396
+SGGQ+ R++ + A + L+D LD T +I CK M +L +T+
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL-VTSK 218
Query: 397 VSLLQPAPEAYDLFDNIILLSEGQIVYQG 425
+ L+ A D I++L EG + G
Sbjct: 219 MEHLKKA-------DKILILHEGSSYFYG 240
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 97/217 (44%), Gaps = 25/217 (11%)
Query: 877 EEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936
EE +L+D++ G L A+ G +GAGKT+L+ ++ G +EG I SG
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG----- 69
Query: 937 ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSD---IDSKTRKMFVDEVMDLVELE 993
R+S +C Q P T+ E+++F +S D S + ++E D+ +
Sbjct: 70 ----RIS-FCSQFSWIMPG-TIKENIIFG----VSYDEYRYRSVIKACQLEE--DISKFA 117
Query: 994 PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
N ++G G+ LS QR R+++A + + + +D P LD + +
Sbjct: 118 EKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 176
Query: 1054 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090
+ +T + + ++ + D++L++ G Y
Sbjct: 177 LMANKTRILVTSK--MEHLKKADKILILHEGSSYFYG 211
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 29/163 (17%)
Query: 894 GVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG---YPKNQATFARVSGYCEQND 950
G L A++G G GK++L+ L EG ++I G Y QA QND
Sbjct: 31 GALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKGSVAYVPQQAWI--------QND 80
Query: 951 IHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNA---MVGLPGVDG 1007
++ E++LF L + + + L +LE L + +G GV+
Sbjct: 81 ------SLRENILFGCQL------EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVN- 127
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 90/211 (42%), Gaps = 25/211 (11%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARV 942
+L++++ G + A+ G +G+GKT+L+ ++ G +EG I SG RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA--SEGIIKHSG---------RV 101
Query: 943 SGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEV---MDLVELEPLTNAM 999
S +C Q P T+ E+++F D K V D+ + N +
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGV------SYDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
+G GV LS QR R+++A + + + +D P LD V + + +T
Sbjct: 154 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 1060 VVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090
+ + ++ D++L++ +G Y
Sbjct: 213 RILVTSK--MEHLRKADKILILHQGSSYFYG 241
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 90/211 (42%), Gaps = 25/211 (11%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARV 942
+L++++ G + A+ G +G+GKT+L+ ++ G +EG I SG RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA--SEGIIKHSG---------RV 101
Query: 943 SGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEV---MDLVELEPLTNAM 999
S +C Q P T+ E+++F D K V D+ + N +
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGV------SYDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
+G GV LS QR R+++A + + + +D P LD V + + +T
Sbjct: 154 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 1060 VVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090
+ + ++ D++L++ +G Y
Sbjct: 213 RILVTSK--MEHLRKADKILILHQGSSYFYG 241
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 97/216 (44%), Gaps = 24/216 (11%)
Query: 877 EEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936
EE +L+D++ G L A+ G +GAGKT+L+ ++ G +EG I SG
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG----- 69
Query: 937 ATFARVSGYCEQNDIHSPHVTVYESLLFSAW--LRLSSDIDSKTRKMFVDEVMDLVELEP 994
R+S +C Q P T+ E+++ ++ R S I + ++E D+ +
Sbjct: 70 ----RIS-FCSQFSWIMPG-TIKENIIGVSYDEYRYRSVI----KACQLEE--DISKFAE 117
Query: 995 LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
N ++G G+ LS QR R+++A + + + +D P LD + + +
Sbjct: 118 KDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 176
Query: 1055 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090
+T + + ++ + D++L++ G Y
Sbjct: 177 MANKTRILVTSK--MEHLKKADKILILHEGSSYFYG 210
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 1008 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1064
LS + +R+ +A EL ++ +DEPT+GL A ++ + VD G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 1065 HQPSIDIFEAFDELLLM-----KRGGQVIYAG 1091
H ++D+ + D ++ + RGGQ++ G
Sbjct: 906 H--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1071
QR RL + + +DEP+ GL R ++ T+++ D G T++ H D
Sbjct: 511 QRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE--DT 568
Query: 1072 FEAFDELLLMK-----RGGQVIYAG 1091
A D L+ + GG+V+ AG
Sbjct: 569 MLAADYLIDIGPGAGIHGGEVVAAG 593
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 1008 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1064
LS + +R+ +A EL ++ +DEPT+GL A ++ + VD G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 1065 HQPSIDIFEAFDELLLM-----KRGGQVIYAG 1091
H ++D+ + D ++ + RGGQ++ G
Sbjct: 906 H--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1071
QR RL + + +DEP+ GL R ++ T+++ D G T++ H D
Sbjct: 511 QRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEHDE--DT 568
Query: 1072 FEAFDELLLMK-----RGGQVIYAG 1091
A D L+ + GG+V+ AG
Sbjct: 569 XLAADYLIDIGPGAGIHGGEVVAAG 593
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 1008 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1064
LS + +R+ +A EL ++ +DEPT+GL A ++ + VD G TV+
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 1065 HQPSIDIFEAFDELLLM-----KRGGQVIYAG 1091
H ++D+ + D ++ + RGGQ++ G
Sbjct: 604 H--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 633
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1071
QR RL + + +DEP+ GL R ++ T+++ D G T++ H D
Sbjct: 209 QRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE--DT 266
Query: 1072 FEAFDELLLMK-----RGGQVIYAG 1091
A D L+ + GG+V+ AG
Sbjct: 267 MLAADYLIDIGPGAGIHGGEVVAAG 291
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 37.7 bits (86), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 31/196 (15%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQN-- 949
RPG + L+G +G GK+T + +LAG++ D P+ Q G QN
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFD----DPPEWQEIIKYFRGSELQNYF 156
Query: 950 ------DIHS----------PHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE 993
DI + P L+L + + K ++ +++LE
Sbjct: 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIK----ILQLE 212
Query: 994 PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
+ ++ LS + +R I + V + DEP+S LD + + +R+
Sbjct: 213 NVLKR-----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL 267
Query: 1054 VDTGRTVVCTIHQPSI 1069
+ + V+C H S+
Sbjct: 268 LAPTKYVICVEHDLSV 283
Score = 36.6 bits (83), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 36/225 (16%)
Query: 835 NVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQ------LLRDVS 888
N+ GH P + L F+ +L F + + D+ + ++ L+ +L
Sbjct: 315 NIFLDGHIPAEN--LRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEE 372
Query: 889 GVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISISGYPKNQATFARVSGYC 946
G F + +MG +G GKTTL+ +LAG + G +++S P Q + G
Sbjct: 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKP--QKIAPKFPGTV 430
Query: 947 EQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVD 1006
Q L F K R F++ ++PL + V
Sbjct: 431 RQ-------------LFF-----------KKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQ 466
Query: 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
LS + +R+ I + L I +DEP++ LD+ I + +R
Sbjct: 467 HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 37.4 bits (85), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 85/209 (40%), Gaps = 21/209 (10%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARV 942
+L+D++ G L A+ G +GAGKT+L+ ++ G +EG I SG + F+ +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSGRISFCSQFSWI 110
Query: 943 -SGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVG 1001
G ++N I Y +L DI K N ++G
Sbjct: 111 MPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEK---------------DNIVLG 155
Query: 1002 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
G+ LS QR R+++A + + + +D P LD + + + +T +
Sbjct: 156 EGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 214
Query: 1062 CTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090
+ ++ + D++L++ G Y
Sbjct: 215 LVTSK--MEHLKKADKILILHEGSSYFYG 241
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQI-----CKYMKQMVHVLEITTI 396
+SGGQ+ R++ + A + L+D LD T +I CK M +L +T+
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL-VTSK 219
Query: 397 VSLLQPAPEAYDLFDNIILLSEGQIVYQG 425
+ L+ A D I++L EG + G
Sbjct: 220 MEHLKKA-------DKILILHEGSSYFYG 241
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 37.0 bits (84), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 91/211 (43%), Gaps = 26/211 (12%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARV 942
+L++++ G + A+ G +G+GKT+L+ ++ G +EG I SG RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA--SEGIIKHSG---------RV 101
Query: 943 SGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEV---MDLVELEPLTNAM 999
S +C Q P T+ E+++ ++ D K V D+ + N +
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIGVSY-------DEYRYKSVVKACQLQQDITKFAEQDNTV 152
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
+G GV LS QR R+++A + + + +D P LD V + + +T
Sbjct: 153 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 211
Query: 1060 VVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090
+ + ++ D++L++ +G Y
Sbjct: 212 RILVTSK--MEHLRKADKILILHQGSSYFYG 240
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 89/211 (42%), Gaps = 25/211 (11%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARV 942
+L++++ G + A+ G +G+GKT+L+ ++ G +EG I SG RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA--SEGIIKHSG---------RV 101
Query: 943 SGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEV---MDLVELEPLTNAM 999
S +C Q P T+ E+++ D K V D+ + N +
Sbjct: 102 S-FCSQFSWIMPG-TIKENIISGV------SYDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
+G GV LS QR R+++A + + + +D P LD V + + +T
Sbjct: 154 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 1060 VVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090
+ + ++ D++L++ +G Y
Sbjct: 213 RILVTSK--MEHLRKADKILILHQGSSYFYG 241
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 95/211 (45%), Gaps = 25/211 (11%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARV 942
+L+D++ G L A+ G +GAGKT+L+ ++ G +EG I SG R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG---------RI 101
Query: 943 SGYCEQNDIHSPHVTVYESLLFSAWLRLSSD---IDSKTRKMFVDEVMDLVELEPLTNAM 999
S +C Q P T+ E+++F +S D S + ++E D+ + N +
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFG----VSYDEYRYRSVIKACQLEE--DISKFAEKDNIV 153
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
+G G+ LS Q+ ++++A + + + +D P LD + + + +T
Sbjct: 154 LGEGGIT-LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 212
Query: 1060 VVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090
+ + ++ + D++L++ G Y
Sbjct: 213 RILVTSK--MEHLKKADKILILHEGSSYFYG 241
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 89/211 (42%), Gaps = 25/211 (11%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARV 942
+L++++ G + A+ G +G+GKT+L+ ++ G +EG I SG RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA--SEGIIKHSG---------RV 101
Query: 943 SGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEV---MDLVELEPLTNAM 999
S +C Q P T+ E+++ D K V D+ + N +
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIRGV------SYDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
+G GV LS QR R+++A + + + +D P LD V + + +T
Sbjct: 154 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 1060 VVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090
+ + ++ D++L++ +G Y
Sbjct: 213 RILVTSK--MEHLRKADKILILHQGSSYFYG 241
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMD-- 912
S+ + SVD ++ G E L+ + DVS F GVLT++ GVSG+GK+TL++
Sbjct: 632 SIEIPAIRRSVDPRRQLTVVGAREHNLRGI-DVS--FPLGVLTSVTGVSGSGKSTLVNDI 688
Query: 913 ---VLAGRKTG 920
VLA R G
Sbjct: 689 LAAVLANRLNG 699
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 1008 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1064
LS + +R+ +A EL ++ +DEPT+GL ++ + VD G TV+
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 1065 HQPSIDIFEAFD 1076
H ++D+ + D
Sbjct: 924 H--NLDVIKTSD 933
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 1008 LSTEQRKRLTIAVELVAN--PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
LS + +R+ +A ++ + + +DEP+ GL R ++ T+ D G T++ H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 1066 QPSIDIFEAFDELLLM-----KRGGQVIYAGP 1092
D E D ++ + + GG+++++GP
Sbjct: 582 DE--DTIEHADWIVDIGPGAGEHGGRIVHSGP 611
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 1008 LSTEQRKRLTIAVELVAN--PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
LS + +RL +A +L +N + +DEP++GL ++ + N G ++ H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
Query: 1066 QPSIDIFEAFDELLLM-----KRGGQVIYAGPL--------GRQSQKLVEYFEAVPGVPR 1112
+D+ D L+ + ++GG+++Y+GP + Q L P PR
Sbjct: 440 --DLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHVPESQTGQYLFADRHTEPHTPR 497
Query: 1113 ITNGYNPATWMLEISTPTAEAQLNVD 1138
PA W LE++ T N+D
Sbjct: 498 -----EPAGW-LELNGVTRNNLDNLD 517
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANP---SIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
+G P + LS + +R+ +A EL + ++ +DEPT+GL + R + VD
Sbjct: 724 LGQPATE-LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782
Query: 1057 GRTVVCTIHQPSIDIFEAFDELLLM-----KRGGQVIYAG 1091
G TV+ H+ + + A D +L + + GG+++ G
Sbjct: 783 GNTVIAVEHK--MQVVAASDWVLDIGPGAGEDGGRLVAQG 820
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 28/143 (19%)
Query: 898 ALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHV- 956
+ G +G GK+TLM +A + + G+P + + Y E DI H
Sbjct: 465 GICGPNGCGKSTLMRAIANGQ----------VDGFPTQEECR---TVYVEH-DIDGTHSD 510
Query: 957 TVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRL 1016
T +F + + I K L+E T+ M+ +P + LS + +L
Sbjct: 511 TSVLDFVFESGVGTKEAIKDK-----------LIEF-GFTDEMIAMP-ISALSGGWKMKL 557
Query: 1017 TIAVELVANPSIIFMDEPTSGLD 1039
+A ++ N I+ +DEPT+ LD
Sbjct: 558 ALARAVLRNADILLLDEPTNHLD 580
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 978 TRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037
TRK ++E ++ L+P +V + GLS Q+ +L +A P +I +DEPT+
Sbjct: 876 TRKE-IEEHCSMLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931
Query: 1038 LD 1039
LD
Sbjct: 932 LD 933
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 920
L+ +S + +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 28 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 64
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
LS ++R+ IA+ L+ +P ++ +DEPTS LD A +++
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With
Atp
Length = 290
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 95/210 (45%), Gaps = 24/210 (11%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARV 942
+L+D++ G L A+ G +GAGKT+L+ ++ G +EG I SG R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG---------RI 101
Query: 943 SGYCEQNDIHSPHVTVYESLLFSAW--LRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000
S +C Q P T+ E+++ ++ R S I + ++E D+ + N ++
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIGVSYDEYRYRSVI----KACQLEE--DISKFAEKDNIVL 153
Query: 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
G G+ LS Q+ ++++A + + + +D P LD + + + +T
Sbjct: 154 GEGGIT-LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 1061 VCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090
+ + ++ + D++L++ G Y
Sbjct: 213 ILVTSK--MEHLKKADKILILHEGSSYFYG 240
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 164 NIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKT 210
++A+ L + ILPS + ++ +GL P++ LL GPPG GKT
Sbjct: 27 DVAKQALQEMVILPSVRPEL-----FTGLRAPAKGLLLFGPPGNGKT 68
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 1008 LSTEQRKRLTIAVELVANPS---IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1064
LS + +R+ +A EL + + +DEPT GL ++ + VD G TV+
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865
Query: 1065 HQPSIDIFEAFDELLLM-----KRGGQVIYAG 1091
H ++D+ + D ++ + K GG ++ G
Sbjct: 866 H--NLDVIKNADHIIDLGPEGGKEGGYIVATG 895
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1069
QR RL + I +DEPT GL R +++T++ D G TV+ H +
Sbjct: 471 QRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate Regulatory
Protein (Bt4638) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 33.5 bits (75), Expect = 0.83, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 1031 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1083
MD+ G+++ A IV+ R ++G+ + IH+ +I+I +A DEL ++
Sbjct: 103 MDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDELETFRK 155
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 33.5 bits (75), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 164 NIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKT 210
++A+ L + ILPS + ++ +GL P+R LL GPPG GKT
Sbjct: 121 DLAKQALQEIVILPSLRPEL-----FTGLRAPARGLLLFGPPGNGKT 162
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 33.5 bits (75), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 920
+ L+ +S + +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 37 EALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 75
>pdb|3CYJ|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Rubrobacter
Xylanophilus
pdb|3CYJ|B Chain B, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Rubrobacter
Xylanophilus
pdb|3CYJ|C Chain C, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Rubrobacter
Xylanophilus
pdb|3CYJ|D Chain D, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Rubrobacter
Xylanophilus
Length = 372
Score = 32.0 bits (71), Expect = 2.8, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 23/108 (21%)
Query: 908 TTLMDVLA---GRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLF 964
TT++ V A GRK GYT GD+S+ + + ++++G E +D SP
Sbjct: 34 TTMILVEAHGGGRKGLGYTYGDVSVGRFVE-----SKLAGVAEGSDALSPP--------- 79
Query: 965 SAWLRLSSDIDSKTR----KMFVDEVMDLVELEPLTNAMVGLPGVDGL 1008
+ W R+ + I + R M V V + L L ++GLP D L
Sbjct: 80 AVWARMQAAIRNAGRPGVGAMAVSAVD--IALWDLKARLLGLPLADAL 125
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 30.4 bits (67), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 978 TRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037
TRK ++E + L+P +V + GLS Q+ +L +A P +I +DEPT+
Sbjct: 876 TRKE-IEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931
Query: 1038 LD 1039
LD
Sbjct: 932 LD 933
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 978 TRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037
TRK ++E + L+P +V + GLS Q+ +L +A P +I +DEPT+
Sbjct: 870 TRKE-IEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 925
Query: 1038 LD 1039
LD
Sbjct: 926 LD 927
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,917,884
Number of Sequences: 62578
Number of extensions: 1627287
Number of successful extensions: 3998
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 3601
Number of HSP's gapped (non-prelim): 343
length of query: 1458
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1347
effective length of database: 8,027,179
effective search space: 10812610113
effective search space used: 10812610113
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)