Query 000506
Match_columns 1458
No_of_seqs 521 out of 6050
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 15:58:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000506.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_281-285//hhsearch_pdb/000506hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 621.6 61.3 765 180-1093 428-1299(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 587.5 55.1 214 855-1093 1030-1253(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 470.3 38.5 436 184-1095 106-560 (607)
4 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 463.9 36.0 436 184-1095 36-490 (538)
5 2iw3_A Elongation factor 3A; a 1.0 1 1 461.0 39.0 427 183-1092 448-981 (986)
6 3ux8_A Excinuclease ABC, A sub 1.0 1 1 454.7 40.0 215 182-431 30-297 (670)
7 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 454.6 34.3 216 855-1107 269-486 (538)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 441.2 33.0 201 882-1107 361-568 (608)
9 3pih_A Uvrabc system protein A 1.0 1 1 352.1 35.6 198 882-1094 598-898 (916)
10 2r6f_A Excinuclease ABC subuni 1.0 1 1 341.5 35.4 195 883-1093 639-937 (972)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=621.62 Aligned_cols=765 Identities=19% Similarity=0.239 Sum_probs=385.7
Q ss_pred CCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCC---CCEEEEECCCCCCC
Q ss_conf 444426313056783883999985999968999999954989999964289997962577666---64089963789889
Q 000506 180 KRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQNDLHF 256 (1458)
Q Consensus 180 ~~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~ 256 (1458)
....++|+|+|+.++||++++|+||+|||||||+++|.|.++|. +|+|.++|+++++... ++.++||+|++++|
T Consensus 428 ~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf 504 (1321)
T 4f4c_A 428 RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEPALF 504 (1321)
T ss_dssp STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCC
T ss_pred CCCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCC---CCCCCCCCCCCHHCCHHHHHHCCCCCCCCCEEE
T ss_conf 99874333318862288278998058985778888754565164---486157996501125999850466658753320
Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999998645016771256779944998860999983299999999872000102799999990996434532368
Q 000506 257 GEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGD 336 (1458)
Q Consensus 257 ~~lTV~Etl~f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dt~vg~ 336 (1458)
.. ||+||+.|+.. +.+.+.+.+||..++.. |. +-.|++..||.||+
T Consensus 505 ~~-TI~eNI~~g~~-------------------------~~~~~~v~~a~~~a~l~-----~~---i~~lp~G~~T~vGe 550 (1321)
T 4f4c_A 505 NC-TIEENISLGKE-------------------------GITREEMVAACKMANAE-----KF---IKTLPNGYNTLVGD 550 (1321)
T ss_dssp SE-EHHHHHHTTCT-------------------------TCCHHHHHHHHHHTTCH-----HH---HHHSTTTTSSEESS
T ss_pred CC-CHHHHHHHHCC-------------------------CCHHHHHHHHHHHCCCH-----HH---HHCCCCCCCCEECC
T ss_conf 78-61678864155-------------------------22099999999875654-----68---87088888607558
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEE
Q ss_conf 66888995788999999998169959798579989999999999999999988469669999807933898105879997
Q 000506 337 QMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416 (1458)
Q Consensus 337 ~~~rGlSGGqkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i~lL 416 (1458)
.. ..||||||||++|||+++.+|+|++||||||+||+.+...+.+.++++.+ ++|+|+..|+.+ +...+|+|++|
T Consensus 551 ~G-~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrls--~i~~aD~Iivl 625 (1321)
T 4f4c_A 551 RG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRLS--TIRNADLIISC 625 (1321)
T ss_dssp SS-CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCTT--TTTTCSEEEEE
T ss_pred CC-CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEECCCHH--HHHHCCEEEEE
T ss_conf 98-87777787999999987259998998455446887899999999999847--988999736387--89868989996
Q ss_pred CCCEEEEECCHHHHHHHHHHCCCCCCCCCCH-HHHHHH--HCCCHHHHHH--HHCCCCCCC-----------CCCHHHHH
Q ss_conf 2982999739666999988659878999998-899987--2481002233--311699986-----------68977899
Q 000506 417 SEGQIVYQGPREKVLEFFEYMGFKCPDRKGV-ADFLQE--VTSKKDQEQY--WFRKDQPYR-----------YISVSDFV 480 (1458)
Q Consensus 417 ~~G~ivy~Gp~~~~~~~Fe~~Gf~cp~~~~~-adfl~e--v~s~~~~~~~--~~~~~~~~~-----------~~s~~ef~ 480 (1458)
.+|+++.+|+.+++.+ ..+. ++.... .....+.... ......... ....++..
T Consensus 626 ~~G~ive~Gth~eL~~-----------~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1321)
T 4f4c_A 626 KNGQVVEVGDHRALMA-----------QQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIM 694 (1321)
T ss_dssp ETTEEEEEECHHHHHT-----------TTCHHHHHHHHHHHHHHHHHHHCC-----------------------------
T ss_pred ECCEEECCCCHHHHHH-----------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 3996513689999998-----------53279999996221222233233443322321112222234222222211022
Q ss_pred HHHHCCHHHHHHHHHHCCCCCCCCCCCCC--------CCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH--
Q ss_conf 96500602245885413876776788633--------34687776569999999999999985174899999999999--
Q 000506 481 QGFSSFHVGQQLANDLAVPYDKSRTHPAA--------LVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITI-- 550 (1458)
Q Consensus 481 ~~f~~s~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~s~~~q~~~~~~R~~~~~~R~~~~~~~~~~~~~i-- 550 (1458)
...+.+.......... ...++.+..... ........+.+..++ .....+..++.-....++
T Consensus 695 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~i~~ 765 (1321)
T 4f4c_A 695 NRVRSSTIGSITNGPV-IDEKEERIGKDALSRLKQELEENNAQKTNLFEILY--------HARPHALSLFIGMSTATIGG 765 (1321)
T ss_dssp ----------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHH--------HTGGGHHHHHHHHHHHHHGG
T ss_pred HHHHCCCCCCCCCCCC-HHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHH--------HHHHHHHHHHHHHHHHHHHH
T ss_conf 1110132124567740-25777531540389999999970786310999999--------98778999999999999999
Q ss_pred -----HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHH--------CCCCHHHH--CCCCCCC
Q ss_conf -----999999977245799876565023687999999999--999999999984--------02401223--0137655
Q 000506 551 -----MSLIALTVFFRTEMPVGNVADGAKFYGALFFSLINL--MFNGLAELAFTV--------FRLPVFFK--QRDHLFY 613 (1458)
Q Consensus 551 -----~ali~gtif~~~~~~~~~~~~~~~~~g~lff~i~~~--~f~~~~~~~~~~--------~~~pvf~k--qr~~~~y 613 (1458)
.+++.+...-....+.........+...+|..+... .+.......... .+..+|.+ .....|+
T Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ff 845 (1321)
T 4f4c_A 766 FIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFF 845 (1321)
T ss_dssp GHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSST
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999999999999875179345566789999999999999999999999999999999999999999888734993332
Q ss_pred C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 7----343788899997109989899999999872085002999999999999999999999999987046457788999
Q 000506 614 P----PWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANTLG 689 (1458)
Q Consensus 614 ~----~~ay~la~~l~~iP~~i~~~~i~~~i~Y~~iG~~~~~~~ff~~~l~~~l~~~~~~~lfr~ia~~~~~~~vA~~~~ 689 (1458)
. +..-.+.....++.. +.. .+......++..++.++ .+. +..+.-+...+ +.
T Consensus 846 d~~~~~~G~i~~r~s~D~~~--i~~-----------~l~~~l~~~~~~~~~~i----~~~-----~~~~~~~~~l~--lv 901 (1321)
T 4f4c_A 846 DSPQNASGKISTRLATDVPN--LRT-----------AIDFRFSTVITTLVSMV----AGI-----GLAFFYGWQMA--LL 901 (1321)
T ss_dssp TSGGGCHHHHHHHHHTHHHH--HHT-----------TTSHHHHHHHHHHHHHH----HHH-----HHHHHHCHHHH--HH
T ss_pred CCCCCCHHHHHHCCHHHHHH--HHH-----------HHHHHHHHHHHHHHHHH----HHE-----EEEHHHHHHHH--HH
T ss_conf 16788848888502505999--999-----------99999999999865377----770-----22137868999--99
Q ss_pred HHHHHHHHHHHHEEC----CCCCC---HHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 999999998652001----68995---46899999880999999999998622787777888988766522455641058
Q 000506 690 TFTLLLVFVLGGFVI----AKDDI---EPFMIWGYYVSPMMYGQNAIVINEFLDERWSKPVSDPKIHEPTVGKLLLKSRG 762 (1458)
Q Consensus 690 ~~~~~~~~l~~Gf~i----~~~~i---p~~~~W~~~isPl~Ya~~al~~neF~~~~~~~~~~~~~~~~~~~G~~~L~~~g 762 (1458)
.+.+++++.+..++. ..... ...-.-.. +..++ ..|...++.++
T Consensus 902 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~e~-----------------------l~gi~tIra~~ 952 (1321)
T 4f4c_A 902 IIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGK------IAIEA-----------------------IENVRTVQALA 952 (1321)
T ss_dssp HHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHH------HHHHH-----------------------HHTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH-----------------------HHHHHHHHHCC
T ss_conf 99988899999999999999999999999888988------99999-----------------------96279888614
Q ss_pred CCC-------------------CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-------------------CC-CCCCC
Q ss_conf 543-------------------4315699999999999-99999999999940-------------------98-88999
Q 000506 763 FFT-------------------VNYWYWICIGALFGFT-ILFNILFIAAIQFL-------------------NP-LGKAK 802 (1458)
Q Consensus 763 ~~~-------------------~~~~~w~~ig~l~~~~-i~f~il~~~~l~~~-------------------~~-~~~~~ 802 (1458)
... ...+.+...+...... +...+.+.+..... .. .....
T Consensus 953 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1032 (1321)
T 4f4c_A 953 REDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLG 1032 (1321)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 14889999999999999999999999999999999999999999998757887537654214789999999987788999
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCHHHHHCCCCCCCCE
Q ss_conf 70210244100014899999877544346677778889999888545777708999522458625213420166533430
Q 000506 803 PTVIEEDGDKKKKASGQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQ 882 (1458)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~l~~~~l~y~~~~~~~~~~~~~~~~~~~ 882 (1458)
....................+.. ...+...........++.. -.++|+|+++.++.. ....
T Consensus 1033 ~~~~~~~~~~~~~~a~~ri~~~l-~~~~~~~~~~~~~~~~~~~--------g~I~f~nVsf~Y~~~----------~~~~ 1093 (1321)
T 4f4c_A 1033 FATSYFPEYAKATFAGGIIFGML-RKISKIDSLSLAGEKKKLY--------GKVIFKNVRFAYPER----------PEIE 1093 (1321)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHH-HCCCSSCTTCCCSBCCCCC--------CCEEEEEEEECCTTS----------CSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCC--------CEEEEEEEEEECCCC----------CCCC
T ss_conf 99999999999999999899986-0766577766778788888--------818999879857999----------9882
Q ss_pred ECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEECCC---CCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 111314678478099996579996447886050896798015599998950781---12234389971589889999989
Q 000506 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ---ATFARVSGYCEQNDIHSPHVTVY 959 (1458)
Q Consensus 883 iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~~yv~Q~d~~~~~lTV~ 959 (1458)
+|+|+|+.++|||++||+|+||||||||+++|.|... +.+|+|.+||.+... ..+++.++||+|++.++. -|++
T Consensus 1094 VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIr 1170 (1321)
T 4f4c_A 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-CSIA 1170 (1321)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS-EEHH
T ss_pred CCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEEC-CCHH
T ss_conf 1245169988989999989999819999999956863--899789999998654999999854599878997327-2399
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 9999987520599999889999999999983997-------532222469998878988989999999995199789993
Q 000506 960 ESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE-------PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMD 1032 (1458)
Q Consensus 960 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-------~~~~~~vg~~~~~glSgGqrkRl~ia~~Lv~~p~il~LD 1032 (1458)
||+.|+. -+.+.++ +.++++++..++. +-.|+.+|..|. .||||||||++|||+|+++|+||+||
T Consensus 1171 eNI~~gl---d~~~~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~-~LSgGQrQriaiARAllr~~~ILiLD 1242 (1321)
T 4f4c_A 1171 ENIIYGL---DPSSVTM----AQVEEAARLANIHNFIAELPEGFETRVGDRGT-QLSGGQKQRIAIARALVRNPKILLLD 1242 (1321)
T ss_dssp HHHSSSS---CTTTSCH----HHHHHHHHHTTCHHHHHTSTTTTCSEETTTSC-SSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred HHHHCCC---CCCCCCH----HHHHHHHHHHCCHHHHHCCCCCCCCEECCCCC-CCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9974549---9999999----99999999829849997176789998238891-56999999999999997179989996
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 9999999999999999999987579989999358509999863618899259399994799
Q 000506 1033 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1033 EPTsGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~ 1093 (1458)
||||+||+.+...|++.+++.. +|+|+|+++|+.+ ....+|++++|+ +|+++..|+.
T Consensus 1243 EaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld-~G~IvE~Gth 1299 (1321)
T 4f4c_A 1243 EATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVS-NGTIIEKGTH 1299 (1321)
T ss_dssp SCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEES-SSSEEEEECH
T ss_pred CCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHH--HHHHCCEEEEEE-CCEEEEECCH
T ss_conf 8111578999999999999973-9998999606899--999699999998-9899998888
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=587.49 Aligned_cols=214 Identities=24% Similarity=0.357 Sum_probs=172.4
Q ss_pred EEEEEEEEEEEECCHHHHHCCCCCCCCEECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEEC
Q ss_conf 89995224586252134201665334301113146784780999965799964478860508967980155999989507
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 934 (1458)
.++++|+++.++.. ....+|+|+|+.++|||++||+|+||||||||+++|+|..+ +.+|+|.+||.+.
T Consensus 1030 ~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i 1097 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEI 1097 (1284)
T ss_dssp CEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCT
T ss_pred CEEEEEEEEECCCC----------CCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 57999989977999----------98700203059976998899988999978999999946867--8997798999980
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCC
Q ss_conf 81---12234389971589889999989999998752059999988999999999998399-------753222246999
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVEL-------EPLTNAMVGLPG 1004 (1458)
Q Consensus 935 ~~---~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L-------~~~~~~~vg~~~ 1004 (1458)
.. ...++.++||+|++.++ ..||+|++.+.... ...+.++ +++.++..++ .+-.|+.+|..|
T Consensus 1098 ~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge~G 1169 (1284)
T 3g5u_A 1098 KQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGDKG 1169 (1284)
T ss_dssp TSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCSTTS
T ss_pred CCCCHHHHHHCEEEECCCCCCC-CCCHHHHHHCCCCC---CCCCHHH----HHHHHHHHCCHHHHHHCCCCCCCCCCCCC
T ss_conf 0078999970268987787406-66699997466877---8999999----99999983959999727042456117888
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECC
Q ss_conf 88789889899999999951997899939999999999999999999987579989999358509999863618899259
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1005 ~~glSgGqrkRl~ia~~Lv~~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~g 1084 (1458)
..||||||||++|||+|+.+|+||+|||||+|||..+...+++.+++. ..|+|+|+++|+++. + ..+|++++|. +
T Consensus 1170 -~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~-~ 1244 (1284)
T 3g5u_A 1170 -TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQ-N 1244 (1284)
T ss_dssp -CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEE-T
T ss_pred -CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHH-H-HCCCEEEEEE-C
T ss_conf -933899999999999997499999986875557999999999999986-799989999558799-9-8099899998-9
Q ss_pred CEEEEECCC
Q ss_conf 399994799
Q 000506 1085 GQVIYAGPL 1093 (1458)
Q Consensus 1085 G~~~y~G~~ 1093 (1458)
|+++..|+.
T Consensus 1245 G~i~~~g~~ 1253 (1284)
T 3g5u_A 1245 GKVKEHGTH 1253 (1284)
T ss_dssp BEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 989997789
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=470.34 Aligned_cols=436 Identities=22% Similarity=0.265 Sum_probs=314.7
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEE---------EECCEECCCC-----CCCCEEEEE
Q ss_conf 26313056783883999985999968999999954989999964289---------9979625776-----666408996
Q 000506 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKI---------KYCGHEFKEF-----VPQRTCAYI 249 (1458)
Q Consensus 184 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I---------~~nG~~~~~~-----~~~~~~~yv 249 (1458)
.+|+++| .+++||+++|+|||||||||||++|+|.+.|+ +|++ .++|.+.... ..+..++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred EEECCCC-CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHEECCEEHHHHHHHHHHHHCCEEEE
T ss_conf 4048989-88989999999999972999999985799878---7854666301331368776134323455653446886
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
Q ss_conf 37898899---999999999864501677125677994499886099998329999999987200010279999999099
Q 000506 250 SQNDLHFG---EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGL 326 (1458)
Q Consensus 250 ~Q~d~~~~---~lTV~Etl~f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lgL 326 (1458)
.|+....+ ..||.|++.... ....++.+++.+||
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~~-------------------------------------------~~~~~~~~L~~lgL 218 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKVD-------------------------------------------EVGKFEEVVKELEL 218 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHTC-------------------------------------------CSSCHHHHHHHTTC
T ss_pred ECHHHHCHHHCCCCHHHHHHHHH-------------------------------------------HHHHHHHHHHHCCC
T ss_conf 32043130220050999963167-------------------------------------------99999999997599
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHH
Q ss_conf 64345323686688899578899999999816995979857998999999999999999998846966999980793389
Q 000506 327 DICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEA 406 (1458)
Q Consensus 327 ~~~~dt~vg~~~~rGlSGGqkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~ 406 (1458)
++..|..+++ |||||||||+||++|+.+|++|+|||||+|||..++.++.+.|+++.+ . +.+++.++|+..++
T Consensus 219 ~~~~~~~~~~-----LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~-g~tvIivsHdl~~~ 291 (607)
T 3bk7_A 219 ENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-E-GKAVLVVEHDLAVL 291 (607)
T ss_dssp TTGGGSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCHHHH
T ss_pred CCHHCCCHHH-----CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHH
T ss_conf 7043798056-----999999999999998459999999797435899999999999999986-6-99899996485898
Q ss_pred HHCCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 81058799972982999739666999988659878999998899987248100223331169998668977899965006
Q 000506 407 YDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSF 486 (1458)
Q Consensus 407 ~~lfD~i~lL~~G~ivy~Gp~~~~~~~Fe~~Gf~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~s~~ef~~~f~~s 486 (1458)
..++|++++|.++...| |.. ..++
T Consensus 292 ~~~adri~vl~~~~~~~-g~~----------------------------------------~~~~--------------- 315 (607)
T 3bk7_A 292 DYLSDVIHVVYGEPGVY-GIF----------------------------------------SKPK--------------- 315 (607)
T ss_dssp HHHCSEEEEEESCTTTE-EEE----------------------------------------CCCE---------------
T ss_pred HHHCCEEEEECCCCCCC-CEE----------------------------------------CCCH---------------
T ss_conf 86589999977986445-212----------------------------------------2413---------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 02245885413876776788633346877765699999999999999851748999999999999999999772457998
Q 000506 487 HVGQQLANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPV 566 (1458)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~gtif~~~~~~~ 566 (1458)
+ .++... . +.
T Consensus 316 -------------------------------~---------~~~~i~------------------~------~~------ 325 (607)
T 3bk7_A 316 -------------------------------G---------TRNGIN------------------E------FL------ 325 (607)
T ss_dssp -------------------------------E---------HHHHHH------------------H------HH------
T ss_pred -------------------------------H---------HHHHHH------------------H------HH------
T ss_conf -------------------------------2---------799999------------------9------97------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 76565023687999999999999999999984024012230137655734378889999710998989999999987208
Q 000506 567 GNVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIG 646 (1458)
Q Consensus 567 ~~~~~~~~~~g~lff~i~~~~f~~~~~~~~~~~~~pvf~kqr~~~~y~~~ay~la~~l~~iP~~i~~~~i~~~i~Y~~iG 646 (1458)
T Consensus 326 -------------------------------------------------------------------------------- 325 (607)
T 3bk7_A 326 -------------------------------------------------------------------------------- 325 (607)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 50029999999999999999999999999870464577889999999999986520016899546899999880999999
Q 000506 647 FAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQ 726 (1458)
Q Consensus 647 ~~~~~~~ff~~~l~~~l~~~~~~~lfr~ia~~~~~~~vA~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isPl~Ya~ 726 (1458)
.|+.. .
T Consensus 326 -----------------------------------------------------~~~~~-~-------------------- 331 (607)
T 3bk7_A 326 -----------------------------------------------------QGYLK-D-------------------- 331 (607)
T ss_dssp -----------------------------------------------------HTEET-T--------------------
T ss_pred -----------------------------------------------------HHCCH-H--------------------
T ss_conf -----------------------------------------------------51013-4--------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 99999862278777788898876652245564105854343156999999999999999999999994098889997021
Q 000506 727 NAIVINEFLDERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVI 806 (1458)
Q Consensus 727 ~al~~neF~~~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~ig~l~~~~i~f~il~~~~l~~~~~~~~~~~~~~ 806 (1458)
.. .. + . ..
T Consensus 332 ------------------~~----~~----------~--------------------------------~----~~---- 339 (607)
T 3bk7_A 332 ------------------EN----VR----------F--------------------------------R----PY---- 339 (607)
T ss_dssp ------------------TT----EE----------C--------------------------------C----SS----
T ss_pred ------------------HH----HH----------C--------------------------------C----CC----
T ss_conf ------------------55----43----------0--------------------------------1----21----
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCHHHHHCCCCCCCCEECCC
Q ss_conf 02441000148999998775443466777788899998885457777089995224586252134201665334301113
Q 000506 807 EEDGDKKKKASGQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRD 886 (1458)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~ 886 (1458)
. ... ... .. . .. ......+.++|+++.+. . ..|++
T Consensus 340 --~-~~~--------------~~~-----~~-~--~~------~~~~~~l~~~~l~~~~~-------------~-~~l~~ 374 (607)
T 3bk7_A 340 --E-IRF--------------TKL-----SE-R--VD------VERETLVEYPRLVKDYG-------------S-FKLEV 374 (607)
T ss_dssp --C-CCC--------------CCS-----TT-S--CC------CCCCEEEEECCEEEECS-------------S-CEEEE
T ss_pred --C-CCC--------------CCC-----CC-C--CC------CCCCEEEEEECEEEEEC-------------C-EEEEE
T ss_conf --2-345--------------657-----77-5--44------46752899913098744-------------3-48993
Q ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 14678478099996579996447886050896798015599998950781122343899715898899999899999987
Q 000506 887 VSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSA 966 (1458)
Q Consensus 887 vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a 966 (1458)
+++.+++||++||+|+||||||||+++|+|..++ .+|+|.+ .+.++|++|+....+.+||.|.+....
T Consensus 375 ~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~ 442 (607)
T 3bk7_A 375 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----------DLTVAYKPQYIKAEYEGTVYELLSKID 442 (607)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHH
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----------EEEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 5153279989999999998999999999669888--8628999----------027999805766778984999997531
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 52059999988999999999998399753222246999887898898999999999519978999399999999999999
Q 000506 967 WLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046 (1458)
Q Consensus 967 ~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~Lv~~p~il~LDEPTsGLD~~sa~~i 1046 (1458)
.... ...+.++++++.+++.+..+..++ .||||||||+.||++|+.+|++|+|||||+|||..++..+
T Consensus 443 ~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l 510 (607)
T 3bk7_A 443 SSKL-------NSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 510 (607)
T ss_dssp HHHH-------HCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHH
T ss_pred CCCC-------CHHHHHHHHHHHCCCCHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
T ss_conf 2587-------789999999987699337549922-----3799999999999999748998999687447899999999
Q ss_pred HHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEECCCCC
Q ss_conf 999999875-7998999935850999986361889925-939999479974
Q 000506 1047 MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKR-GGQVIYAGPLGR 1095 (1458)
Q Consensus 1047 ~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~illl~~-gG~~~y~G~~~~ 1095 (1458)
+++++++++ .|.|||+++|+.. ++...+|++++|.. .|.....|++.+
T Consensus 511 ~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 511 SRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp HHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEECCCCCEEEECCCHHH
T ss_conf 99999999747989999909899-999869999999598306974289899
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=463.94 Aligned_cols=436 Identities=22% Similarity=0.254 Sum_probs=312.5
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEE---------EECCEECCCC-----CCCCEEEEE
Q ss_conf 26313056783883999985999968999999954989999964289---------9979625776-----666408996
Q 000506 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKI---------KYCGHEFKEF-----VPQRTCAYI 249 (1458)
Q Consensus 184 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I---------~~nG~~~~~~-----~~~~~~~yv 249 (1458)
.+|+|+| .+++||+++|+|||||||||||++|+|.++|+ +|++ .++|.+.... ..+..++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred CCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0026768-67999999999999997999999996799888---8866753145677618840777787888874446653
Q ss_pred CCCCCCCCC---CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
Q ss_conf 378988999---99999999864501677125677994499886099998329999999987200010279999999099
Q 000506 250 SQNDLHFGE---MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGL 326 (1458)
Q Consensus 250 ~Q~d~~~~~---lTV~Etl~f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lgL 326 (1458)
.|+....+. .||.|++.... ....++.+++.+||
T Consensus 112 ~q~~~~~~~~~~~~v~e~~~~~~-------------------------------------------~~~~~~~~l~~lgl 148 (538)
T 1yqt_A 112 PQYVDLIPKAVKGKVIELLKKAD-------------------------------------------ETGKLEEVVKALEL 148 (538)
T ss_dssp CSCGGGSGGGCCSBHHHHHHHHC-------------------------------------------SSSCHHHHHHHTTC
T ss_pred HHHHHHCCHHHHCCHHHHHHHHH-------------------------------------------HHHHHHHHHHHCCC
T ss_conf 22343210121121999974313-------------------------------------------99999999987699
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHH
Q ss_conf 64345323686688899578899999999816995979857998999999999999999998846966999980793389
Q 000506 327 DICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEA 406 (1458)
Q Consensus 327 ~~~~dt~vg~~~~rGlSGGqkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~ 406 (1458)
++..+..+++ |||||||||+||++|+.+|++|+|||||++||..++.++.+.|+++.+ . +.+++.++|+..++
T Consensus 149 ~~~~~~~~~~-----LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~-g~tvi~vsHd~~~~ 221 (538)
T 1yqt_A 149 ENVLEREIQH-----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-E-GKSVLVVEHDLAVL 221 (538)
T ss_dssp TTTTTSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCHHHH
T ss_pred CHHHHCCHHH-----CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHH
T ss_conf 7366098354-----899999999999998469999999897345798899999999999996-5-98799994788999
Q ss_pred HHCCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 81058799972982999739666999988659878999998899987248100223331169998668977899965006
Q 000506 407 YDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSF 486 (1458)
Q Consensus 407 ~~lfD~i~lL~~G~ivy~Gp~~~~~~~Fe~~Gf~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~s~~ef~~~f~~s 486 (1458)
..++|++++|.+|...|. .. ..++ +.
T Consensus 222 ~~~~dri~vl~~~~~~~~-~~----------------------------------------~~~~---~~---------- 247 (538)
T 1yqt_A 222 DYLSDIIHVVYGEPGVYG-IF----------------------------------------SQPK---GT---------- 247 (538)
T ss_dssp HHHCSEEEEEEEETTTEE-EE----------------------------------------CCCE---EH----------
T ss_pred HHHCCEEEEECCCCCCCC-CC----------------------------------------CCHH---HH----------
T ss_conf 976889999868632440-22----------------------------------------5535---58----------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 02245885413876776788633346877765699999999999999851748999999999999999999772457998
Q 000506 487 HVGQQLANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPV 566 (1458)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~gtif~~~~~~~ 566 (1458)
+..+ ..
T Consensus 248 ------------------------------------------~~~~----------~~---------------------- 253 (538)
T 1yqt_A 248 ------------------------------------------RNGI----------NE---------------------- 253 (538)
T ss_dssp ------------------------------------------HHHH----------HH----------------------
T ss_pred ------------------------------------------HHHH----------HH----------------------
T ss_conf ------------------------------------------9999----------98----------------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 76565023687999999999999999999984024012230137655734378889999710998989999999987208
Q 000506 567 GNVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIG 646 (1458)
Q Consensus 567 ~~~~~~~~~~g~lff~i~~~~f~~~~~~~~~~~~~pvf~kqr~~~~y~~~ay~la~~l~~iP~~i~~~~i~~~i~Y~~iG 646 (1458)
+ +.
T Consensus 254 --------~--------------------------------------------------------------------~~- 256 (538)
T 1yqt_A 254 --------F--------------------------------------------------------------------LR- 256 (538)
T ss_dssp --------H--------------------------------------------------------------------HH-
T ss_pred --------H--------------------------------------------------------------------HH-
T ss_conf --------7--------------------------------------------------------------------64-
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 50029999999999999999999999999870464577889999999999986520016899546899999880999999
Q 000506 647 FAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQ 726 (1458)
Q Consensus 647 ~~~~~~~ff~~~l~~~l~~~~~~~lfr~ia~~~~~~~vA~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isPl~Ya~ 726 (1458)
|+...
T Consensus 257 ------------------------------------------------------~~~~~--------------------- 261 (538)
T 1yqt_A 257 ------------------------------------------------------GYLKD--------------------- 261 (538)
T ss_dssp ------------------------------------------------------TEETT---------------------
T ss_pred ------------------------------------------------------HCCCH---------------------
T ss_conf ------------------------------------------------------02300---------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 99999862278777788898876652245564105854343156999999999999999999999994098889997021
Q 000506 727 NAIVINEFLDERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVI 806 (1458)
Q Consensus 727 ~al~~neF~~~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~ig~l~~~~i~f~il~~~~l~~~~~~~~~~~~~~ 806 (1458)
.. . . . .. ..
T Consensus 262 ------------------~~----~--~--------~--------------------------------~~--~~----- 270 (538)
T 1yqt_A 262 ------------------EN----V--R--------F--------------------------------RP--YE----- 270 (538)
T ss_dssp ------------------TT----E--E--------C--------------------------------SS--SC-----
T ss_pred ------------------HH----H--C--------C--------------------------------CC--CC-----
T ss_conf ------------------23----2--0--------3--------------------------------44--45-----
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCHHHHHCCCCCCCCEECCC
Q ss_conf 02441000148999998775443466777788899998885457777089995224586252134201665334301113
Q 000506 807 EEDGDKKKKASGQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRD 886 (1458)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~ 886 (1458)
... .... .. . . +.....+.++|+++.+. . ..|++
T Consensus 271 ----~~~--------------~~~~----~~-~---~------~~~~~~l~~~~l~~~~~-------------~-~~l~~ 304 (538)
T 1yqt_A 271 ----IKF--------------TKTG----ER-V---E------IERETLVTYPRLVKDYG-------------S-FRLEV 304 (538)
T ss_dssp ----CCC--------------CCSS----GG-G---S------SCCCEEEEECCEEEEET-------------T-EEEEE
T ss_pred ----CCC--------------CCCC----CC-C---C------CCCCEEEEEEEEEEEEC-------------C-EEEEE
T ss_conf ----554--------------5577----65-5---6------67871899930799989-------------9-89990
Q ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 14678478099996579996447886050896798015599998950781122343899715898899999899999987
Q 000506 887 VSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSA 966 (1458)
Q Consensus 887 vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a 966 (1458)
+++.+++||++||+|+||||||||+++|+|..++ ..|+|.+ ...++|++|+....+..||.|.+....
T Consensus 305 ~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~ 372 (538)
T 1yqt_A 305 EPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----------DLTVAYKPQYIKADYEGTVYELLSKID 372 (538)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHH
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----------CCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 7441289989999889999999999999679989--9718998----------746999826776788885999998640
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 52059999988999999999998399753222246999887898898999999999519978999399999999999999
Q 000506 967 WLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046 (1458)
Q Consensus 967 ~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~Lv~~p~il~LDEPTsGLD~~sa~~i 1046 (1458)
..... ..+.++++++.+++.+..+..++ .||||||||+.||++|+.+|++|+|||||+|||..+...+
T Consensus 373 ~~~~~-------~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i 440 (538)
T 1yqt_A 373 ASKLN-------SNFYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 440 (538)
T ss_dssp HHHHT-------CHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHH
T ss_pred CCCCC-------HHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
T ss_conf 36887-------89999999997499156539944-----4899999999999999728998999398010899999999
Q ss_pred HHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEECCCCC
Q ss_conf 999999875-7998999935850999986361889925-939999479974
Q 000506 1047 MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKR-GGQVIYAGPLGR 1095 (1458)
Q Consensus 1047 ~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~illl~~-gG~~~y~G~~~~ 1095 (1458)
++.++++++ .|.|||+++|+.. ++...+|++++|.. .|+++..|++.+
T Consensus 441 ~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 441 SRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHH
T ss_conf 99999999867989999939899-999968999999088315740489899
No 5
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=461.02 Aligned_cols=427 Identities=21% Similarity=0.308 Sum_probs=305.6
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCCCCEEEEECCC-CCCCCCCCH
Q ss_conf 4263130567838839999859999689999999549899999642899979625776666408996378-988999999
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQN-DLHFGEMTV 261 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~-d~~~~~lTV 261 (1458)
..+|+|+|+.+++|++++|+|||||||||||++|+| |+| +|.+... ...++|++|+ +..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC---------CCC--CCCCCCC---CEEEEEECCCCCCCCCCCCH
T ss_conf 876741269981897899999999879999999948---------986--7976635---41699973564324557809
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC-CCCCCCCCCCCCC
Q ss_conf 999998645016771256779944998860999983299999999872000102799999990996-4345323686688
Q 000506 262 RETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD-ICADTMVGDQMRR 340 (1458)
Q Consensus 262 ~Etl~f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lgL~-~~~dt~vg~~~~r 340 (1458)
.|++.+ ...+ . ++ .++.+++.+||. +..+..+++
T Consensus 514 ~e~l~~--~~~~--~----------~~---------------------------~v~~~L~~lgL~~~~~~~~~~~---- 548 (986)
T 2iw3_A 514 LDFVFE--SGVG--T----------KE---------------------------AIKDKLIEFGFTDEMIAMPISA---- 548 (986)
T ss_dssp HHHHHT--TCSS--C----------HH---------------------------HHHHHHHHTTCCHHHHHSBGGG----
T ss_pred HHHHHH--HHCC--H----------HH---------------------------HHHHHHHHCCCCHHHHCCCCCC----
T ss_conf 999998--6127--9----------99---------------------------9999999869984464398020----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEECCCE
Q ss_conf 89957889999999981699597985799899999999999999999884696699998079338981058799972982
Q 000506 341 GVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420 (1458)
Q Consensus 341 GlSGGqkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i~lL~~G~ 420 (1458)
|||||||||.||++|+.+|++|+|||||+|||..++.++.+.|++ . +.+++.++|+..++.+++|++++|.+|+
T Consensus 549 -LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~-g~tvIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 549 -LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----C-GITSITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----S-CSEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----C-CCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf -799999999999999649999999797667999999999999986----7-9989999798899998689999997994
Q ss_pred EE-EECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf 99-97396669999886598789999988999872481002233311699986689778999650060224588541387
Q 000506 421 IV-YQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAVP 499 (1458)
Q Consensus 421 iv-y~Gp~~~~~~~Fe~~Gf~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~s~~ef~~~f~~s~~~~~~~~~~~~~ 499 (1458)
++ +.|+.+++... .| . ...+
T Consensus 623 iv~~~G~~~e~~~~-------~~---------------~-~~~~------------------------------------ 643 (986)
T 2iw3_A 623 LRKYKGNFTEFVKK-------CP---------------A-AKAY------------------------------------ 643 (986)
T ss_dssp EEEEESCHHHHHHH-------CG---------------G-GGGS------------------------------------
T ss_pred EECCCCCHHHHHHH-------HH---------------H-HHHH------------------------------------
T ss_conf 42677999999861-------48---------------8-9999------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 67767886333468777656999999999999998517489999999999999999997724579987656502368799
Q 000506 500 YDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGAKFYGAL 579 (1458)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~s~~~q~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~gtif~~~~~~~~~~~~~~~~~g~l 579 (1458)
+... ....
T Consensus 644 ------------------------------------------------------------~~l~--~~~~---------- 651 (986)
T 2iw3_A 644 ------------------------------------------------------------EELS--NTDL---------- 651 (986)
T ss_dssp ------------------------------------------------------------SSTT--TCCC----------
T ss_pred ------------------------------------------------------------HHHH--HHHH----------
T ss_conf ------------------------------------------------------------8644--5443----------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999999999999999840240122301376557343788899997109989899999999872085002999999999
Q 000506 580 FFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYL 659 (1458)
Q Consensus 580 ff~i~~~~f~~~~~~~~~~~~~pvf~kqr~~~~y~~~ay~la~~l~~iP~~i~~~~i~~~i~Y~~iG~~~~~~~ff~~~l 659 (1458)
T Consensus 652 -------------------------------------------------------------------------------- 651 (986)
T 2iw3_A 652 -------------------------------------------------------------------------------- 651 (986)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999998704645778899999999999865200168995468999998809999999999986227877
Q 000506 660 AFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERW 739 (1458)
Q Consensus 660 ~~~l~~~~~~~lfr~ia~~~~~~~vA~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isPl~Ya~~al~~neF~~~~~ 739 (1458)
.+
T Consensus 652 ------------------------------------------------------------------------------~~ 653 (986)
T 2iw3_A 652 ------------------------------------------------------------------------------EF 653 (986)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------HC
T ss_conf ------------------------------------------------------------------------------20
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 77888988766522455641058543431569999999999999999999999940988899970210244100014899
Q 000506 740 SKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDGDKKKKASGQ 819 (1458)
Q Consensus 740 ~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~ig~l~~~~i~f~il~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1458)
. .+.. +. .
T Consensus 654 ~--~p~~----------------------------------------------------~~----------~-------- 661 (986)
T 2iw3_A 654 K--FPEP----------------------------------------------------GY----------L-------- 661 (986)
T ss_dssp C--CCCC----------------------------------------------------CC----------C--------
T ss_pred C--CCCC----------------------------------------------------CC----------C--------
T ss_conf 3--5655----------------------------------------------------54----------3--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCHHHHHCCCCCCCCEECCCCEEEEECCEEEEE
Q ss_conf 99987754434667777888999988854577770899952245862521342016653343011131467847809999
Q 000506 820 PGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTAL 899 (1458)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~ai 899 (1458)
. .. . ......+.++|+++.++. ..+.+|+|+|+.+++|++++|
T Consensus 662 ---~----~~-------------~------~~~~~mL~v~nLs~~Y~g-----------~~~~iL~dVSl~I~~GeivaI 704 (986)
T 2iw3_A 662 ---E----GV-------------K------TKQKAIVKVTNMEFQYPG-----------TSKPQITDINFQCSLSSRIAV 704 (986)
T ss_dssp ---T----TC-------------C------STTSEEEEEEEEEECCTT-----------CSSCSEEEEEEEEETTCEEEE
T ss_pred ---C----CC-------------C------CCCCCEEEEEEEEEEECC-----------CCCEEEECCEEEECCCCEEEE
T ss_conf ---3----45-------------6------678706999846998189-----------874134322799828978999
Q ss_pred ECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEECCCCCCCCEEEEECCCCCC----CCCCCHHHHHHHHHHHH------
Q ss_conf 65799964478860508967980155999989507811223438997158988----99999899999987520------
Q 000506 900 MGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIH----SPHVTVYESLLFSAWLR------ 969 (1458)
Q Consensus 900 ~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~~yv~Q~d~~----~~~lTV~E~l~f~a~lr------ 969 (1458)
+|+||||||||+++|+|...+ .+|+|.++|. ..++|++|+..+ ....|++|.+.+.-...
T Consensus 705 iGpNGSGKSTLLklLaGll~P--~sG~I~~~~~--------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~ 774 (986)
T 2iw3_A 705 IGPNGAGKSTLINVLTGELLP--TSGEVYTHEN--------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETM 774 (986)
T ss_dssp CSCCCHHHHHHHHHHTTSSCC--SEEEEEECTT--------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTT
T ss_pred ECCCCCCHHHHHHHHHCCCCC--CCEEEEECCC--------CCEEEECCCHHHHHHCCCCCCHHHHHHHHHHCCCHHHHH
T ss_conf 899998799999999579888--8608998686--------425763130243321001147999988775045025555
Q ss_pred ------CC----------------------------------------------------CCC-----------------
Q ss_conf ------59----------------------------------------------------999-----------------
Q 000506 970 ------LS----------------------------------------------------SDI----------------- 974 (1458)
Q Consensus 970 ------~~----------------------------------------------------~~~----------------- 974 (1458)
.. ...
T Consensus 775 ~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~ 854 (986)
T 2iw3_A 775 DRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESH 854 (986)
T ss_dssp TTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHH
T ss_pred HHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 43321034355544200011232012344445554312220021000255432000001234323443210167776667
Q ss_pred -----------------CHHHHHHHHHHHHHHCCCCC-C-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf -----------------98899999999999839975-3-2222469998878988989999999995199789993999
Q 000506 975 -----------------DSKTRKMFVDEVMDLVELEP-L-TNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPT 1035 (1458)
Q Consensus 975 -----------------~~~~~~~~v~~vl~~l~L~~-~-~~~~vg~~~~~glSgGqrkRl~ia~~Lv~~p~il~LDEPT 1035 (1458)
........++++++.+||.+ . .+..+ ..||||||||+.||++|+.+|++|+|||||
T Consensus 855 ~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT 929 (986)
T 2iw3_A 855 SKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPT 929 (986)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGG
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCCC-----CCCCHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 665544324555430223234799999999976998054448980-----423999999999999998399999997986
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECC
Q ss_conf 999999999999999998757998999935850999986361889925939999479
Q 000506 1036 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092 (1458)
Q Consensus 1036 sGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~ 1092 (1458)
+|||..+...+.+.++++ +.|||+++|++. .+...+|++++|.+ |+++..|+
T Consensus 930 ~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 930 NYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp GTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTCCEEECCBT-TBCCC---
T ss_pred CCCCHHHHHHHHHHHHHH---CCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 577999999999999974---997999979899-99985899999989-99998687
No 6
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=454.67 Aligned_cols=215 Identities=20% Similarity=0.261 Sum_probs=155.4
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHH---------------------HHHHCCCCCCCC----CCCEEEECCEE
Q ss_conf 44263130567838839999859999689999---------------------999549899999----64289997962
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLL---------------------MALAGKLDDDLK----LTGKIKYCGHE 236 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL---------------------~~LaG~l~~~~~----~~G~I~~nG~~ 236 (1458)
..++|+|+|+.+++||+++|+||||||||||+ +.+.|...|+.+ ..|.|.++|..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCH
T ss_conf 76402343899879989999899999988871510123211100011002445553034567756321356415744720
Q ss_pred CCCCCCCCEEEEECCCCC-------------------CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 577666640899637898-------------------8999999999998645016771256779944998860999983
Q 000506 237 FKEFVPQRTCAYISQNDL-------------------HFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297 (1458)
Q Consensus 237 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTV~Etl~f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~ 297 (1458)
.... +++.++|++|... .++.+||+|++.+......... ..+..
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~--------~~~~~-------- 172 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK--------EAQIA-------- 172 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred HHCC-CHHCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHH--------HHHHH--------
T ss_conf 1025-500004651125667777753111123444333457859999997520364314--------56778--------
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCCCCH
Q ss_conf 29999999987200010279999999099643-45323686688899578899999999816995--9798579989999
Q 000506 298 EIDAYMKATALAGQKTSLATDYVLKLLGLDIC-ADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAK--VLLMDEISTGLDS 374 (1458)
Q Consensus 298 ~id~~~~a~~~~~~~~~~~~d~il~~lgL~~~-~dt~vg~~~~rGlSGGqkkRvsia~~L~~~~~--illlDEptsGLDs 374 (1458)
+... .+.. ..-.+++.+||++. .|..+++ |||||||||.||++|+.+|+ +|+|||||+|||+
T Consensus 173 --~~~~-------~~~~-~~~~~l~~~gL~~~~~~~~~~~-----LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 173 --RLIL-------REIR-DRLGFLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CH-HHHHHHHHTTCTTCCTTCBGGG-----SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred --HHHH-------HHHH-HHHHHHHHCCCCHHHHCCCCCC-----CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf --8889-------9999-9998999759843441497001-----89999999999999962899878999798568999
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEE------CCCEEEEECCHHHHH
Q ss_conf 999999999999988469669999807933898105879997------298299973966699
Q 000506 375 STTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL------SEGQIVYQGPREKVL 431 (1458)
Q Consensus 375 ~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i~lL------~~G~ivy~Gp~~~~~ 431 (1458)
.++.++.+.|+++.. . +.+++.++|+...+ ..+|++++| .+|++++.|+++++.
T Consensus 238 ~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-L-GNTLIVVEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH-T-TCEEEEECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH-C-CCEEEEEECCHHHH-HHCCEEEEECCCCCCCCCEEEEECCHHHHH
T ss_conf 999999999999997-4-99899995787999-629989994466656698899740899986
No 7
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=454.61 Aligned_cols=216 Identities=21% Similarity=0.249 Sum_probs=169.6
Q ss_pred EEEEEEEEEEEECCHHHHHCCCCCCCCEECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEEC
Q ss_conf 89995224586252134201665334301113146784780999965799964478860508967980155999989507
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 934 (1458)
.+.+++++..+. ...|+.+++.+++||+++|+|+||||||||+++|+|..++ .+|+|.+++
T Consensus 269 ~l~~~~l~~~~~--------------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~--- 329 (538)
T 3ozx_A 269 KMKWTKIIKKLG--------------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEK--- 329 (538)
T ss_dssp EEEECCEEEEET--------------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSC---
T ss_pred EEEECCEEEEEC--------------CEEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECC---
T ss_conf 699823399979--------------8899826646889989999999999899999999578889--981899998---
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 81122343899715898899999899999987520599999889999999999983997532222469998878988989
Q 000506 935 NQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRK 1014 (1458)
Q Consensus 935 ~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrk 1014 (1458)
+.++|++|+.......||+|++.+...... . . ....++++++.++|.+..+..++ .|||||||
T Consensus 330 ------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~-~---~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~Q 392 (538)
T 3ozx_A 330 ------QILSYKPQRIFPNYDGTVQQYLENASKDAL--S-T---SSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQ 392 (538)
T ss_dssp ------CCEEEECSSCCCCCSSBHHHHHHHHCSSTT--C-T---TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHH
T ss_pred ------EEEEEECHHCCCCCCCCHHHHHHHHHHHCC--C-H---HHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHH
T ss_conf ------456761400034547779999987553112--1-1---69999999987599778628932-----27999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEECC-CEEEEECC
Q ss_conf 99999999519978999399999999999999999999875-79989999358509999863618899259-39999479
Q 000506 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRG-GQVIYAGP 1092 (1458)
Q Consensus 1015 Rl~ia~~Lv~~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~illl~~g-G~~~y~G~ 1092 (1458)
|+.||++|+.+|++|+|||||+|||..++..+++.++++++ .|.|||+++|+.. ++...+|++++|..+ |.....++
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCCCC
T ss_conf 9999999970899899969865799999999999999999738989999958899-999968999999698510116798
Q ss_pred CCCCHHHHHHHHHHC
Q ss_conf 974237899999839
Q 000506 1093 LGRQSQKLVEYFEAV 1107 (1458)
Q Consensus 1093 ~~~~~~~~~~yF~~~ 1107 (1458)
.......+..|+..+
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 477887888887416
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=441.16 Aligned_cols=201 Identities=19% Similarity=0.208 Sum_probs=158.0
Q ss_pred EECCCCEEEEECC-----EEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 0111314678478-----09999657999644788605089679801559999895078112234389971589889999
Q 000506 882 QLLRDVSGVFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHV 956 (1458)
Q Consensus 882 ~iL~~vs~~i~pG-----e~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~~yv~Q~d~~~~~l 956 (1458)
..++++++.+.+| |+++|+|+||||||||+++|+|..++ .+|+. . ....++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~----~~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------I----PKLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------C----CSCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC--CCCCC------C----CCCCEEEECCCCCCCCCC
T ss_conf 44686589970685146518999888898699999999657878--78858------6----677379860544445786
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 98999999875205999998899999999999839975322224699988789889899999999951997899939999
Q 000506 957 TVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036 (1458)
Q Consensus 957 TV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~Lv~~p~il~LDEPTs 1036 (1458)
||+|.+... .+. ... ....++++++.++|.+..+..++ .||||||||+.||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HHC--CCC---CHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--530--324---68999999987498346519932-----389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 999999999999999987-57998999935850999986361889925-939999479974237899999839
Q 000506 1037 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKR-GGQVIYAGPLGRQSQKLVEYFEAV 1107 (1458)
Q Consensus 1037 GLD~~sa~~i~~~l~~~~-~~g~tvi~t~Hqps~~i~~~fD~illl~~-gG~~~y~G~~~~~~~~~~~yF~~~ 1107 (1458)
|||..++..++++++++. +.|.|||+++|+.. ++...+|++++|.. .|+++..|++.+--.....+...+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 899999999999999999757998999968899-999868999999589873774298699863046899754
No 9
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=352.10 Aligned_cols=198 Identities=26% Similarity=0.401 Sum_probs=143.8
Q ss_pred EECCCCEEEEECCEEEEEECCCCCCHHHHH---------HHHCCCCC-CC---CE------EEEEEECCEECCCCC----
Q ss_conf 011131467847809999657999644788---------60508967-98---01------559999895078112----
Q 000506 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT-GG---YT------EGDISISGYPKNQAT---- 938 (1458)
Q Consensus 882 ~iL~~vs~~i~pGe~~ai~G~sGaGKTTLl---------~~L~g~~~-~~---~~------~G~i~i~G~~~~~~~---- 938 (1458)
..|+|||+.+++|++++|+|+||||||||+ +.+.+... .+ .. .+.+.++..+.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 43365312871895999992588881545777777899987403445666533335510114257631565566555564
Q ss_pred ----------------------------------------CCCEEEEECCCCCCCC------------------------
Q ss_conf ----------------------------------------2343899715898899------------------------
Q 000506 939 ----------------------------------------FARVSGYCEQNDIHSP------------------------ 954 (1458)
Q Consensus 939 ----------------------------------------~~~~~~yv~Q~d~~~~------------------------ 954 (1458)
..+..||+.++....|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHC
T ss_conf 30223678899986126687750455543111146664432367634877410167615632201464356665543015
Q ss_pred --------CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf --------999899999987520599999889999999999983997532222469998878988989999999995199
Q 000506 955 --------HVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANP 1026 (1458)
Q Consensus 955 --------~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~Lv~~p 1026 (1458)
.+||.|++.|.... .....+.++++.+||... ..|.+ ...||||||||+.||++|+.+|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~---~lgq~-~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYV---KLGQP-ATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGS---BTTCC-STTCCHHHHHHHHHHHHHTSCC
T ss_pred CCCHHHHHHCCHHHHHHHHHCC---------HHHHHHHHHHHHCCCCHH---HCCCC-CCCCCHHHHHHHHHHHHHHHCC
T ss_conf 6777877407799999987515---------058999999998188633---31687-1579999999999999996287
Q ss_pred ---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEE-----CCCEEEEECCCC
Q ss_conf ---78999399999999999999999999875799899993585099998636188992-----593999947997
Q 000506 1027 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK-----RGGQVIYAGPLG 1094 (1458)
Q Consensus 1027 ---~il~LDEPTsGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~-----~gG~~~y~G~~~ 1094 (1458)
+|++|||||+|||..+...+++.|+++++.|.|||+++|+++ ....+|++++|. +||+++..|++.
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEEEEECCCCCCCCCEEEEECCHH
T ss_conf 889789997988899999999999999999966998999937999--99729999996687777897899976999
No 10
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=1.00 E-value=1 Score=341.51 Aligned_cols=195 Identities=29% Similarity=0.391 Sum_probs=145.4
Q ss_pred ECCCCEEEEECCEEEEEECCCCCCHHHHHHHHC-C----C-----CCCC---CEEE------EEEECCEECCCC---C--
Q ss_conf 111314678478099996579996447886050-8----9-----6798---0155------999989507811---2--
Q 000506 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLA-G----R-----KTGG---YTEG------DISISGYPKNQA---T-- 938 (1458)
Q Consensus 883 iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~-g----~-----~~~~---~~~G------~i~i~G~~~~~~---~-- 938 (1458)
.|+|||+.+++|++++|+|+||||||||++.|. | . ...| ...| .|.+++.+.... .
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred CCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCH
T ss_conf 64662599868989999927999889999999999998762477778885014226434453899758444667555601
Q ss_pred -----------------CCCEEEEECCCCCCC----------------------C-------------------------
Q ss_conf -----------------234389971589889----------------------9-------------------------
Q 000506 939 -----------------FARVSGYCEQNDIHS----------------------P------------------------- 954 (1458)
Q Consensus 939 -----------------~~~~~~yv~Q~d~~~----------------------~------------------------- 954 (1458)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHCCCCCCCCCCCCCCCCCCCHHHHHHCCC
T ss_conf 22137899999861188988725454324435555655212466503410111665310021124643340223331067
Q ss_pred -------CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf -------9998999999875205999998899999999999839975-32222469998878988989999999995199
Q 000506 955 -------HVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-LTNAMVGLPGVDGLSTEQRKRLTIAVELVANP 1026 (1458)
Q Consensus 955 -------~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~~glSgGqrkRl~ia~~Lv~~p 1026 (1458)
.+||.|++.|.+. .. +...+.++++.++|.. ..+..+ ..||||||||+.||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~~---~~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------IP---KIKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------CH---HHHHHHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHHHCCHHHHHHHHHC------CH---HHHHHHHHHHHCCCCCCCCCCCH-----HHCCHHHHHHHHHHHHHHCCC
T ss_conf 77787650679999998751------33---68999999998599821102704-----019999999999999995388
Q ss_pred ---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEE-----CCCEEEEECCC
Q ss_conf ---78999399999999999999999999875799899993585099998636188992-----59399994799
Q 000506 1027 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK-----RGGQVIYAGPL 1093 (1458)
Q Consensus 1027 ---~il~LDEPTsGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~-----~gG~~~y~G~~ 1093 (1458)
++++|||||+|||..+...+++.++++++.|.|||+++|+.. ....+|++++|. ++|+++..|+.
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH--HHHHCCEEEEECCCCCCCCCEEEEECCH
T ss_conf 899889997987899999999999999999967998999868879--9984999999767777789889986599
Done!