Query 000507
Match_columns 1458
No_of_seqs 193 out of 206
Neff 3.9
Searched_HMMs 46136
Date Mon Apr 1 17:12:07 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000507.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000507hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0196 Tyrosine kinase, EPH ( 96.0 0.006 1.3E-07 77.0 4.6 61 807-880 261-331 (996)
2 PF07699 GCC2_GCC3: GCC2 and G 95.8 0.0048 1E-07 53.1 1.8 27 816-844 9-35 (48)
3 PF10256 Erf4: Golgin subfamil 93.9 0.23 4.9E-06 50.0 8.1 67 980-1046 21-91 (118)
4 cd00185 TNFR Tumor necrosis fa 91.2 0.29 6.3E-06 48.0 4.6 65 804-874 12-86 (98)
5 PF07562 NCD3G: Nine Cysteines 90.3 0.07 1.5E-06 47.5 -0.5 36 806-843 6-51 (54)
6 PHA02637 TNF-alpha-receptor-li 89.0 0.35 7.5E-06 50.3 3.3 57 808-869 31-92 (127)
7 PHA02637 TNF-alpha-receptor-li 85.4 0.61 1.3E-05 48.6 2.7 41 800-841 38-87 (127)
8 KOG0921 Dosage compensation co 85.2 2.1 4.6E-05 55.9 7.6 37 66-113 1048-1088(1282)
9 PF07699 GCC2_GCC3: GCC2 and G 82.6 1 2.2E-05 39.0 2.5 33 801-833 6-43 (48)
10 PTZ00382 Variant-specific surf 69.8 2.5 5.5E-05 42.1 1.6 26 816-844 4-29 (96)
11 KOG0921 Dosage compensation co 62.7 18 0.00039 48.0 7.4 17 566-582 1135-1151(1282)
12 PF10256 Erf4: Golgin subfamil 59.0 17 0.00038 36.7 5.3 64 1128-1195 26-114 (118)
13 cd00185 TNFR Tumor necrosis fa 56.0 12 0.00025 36.9 3.4 32 815-846 11-44 (98)
14 PF07354 Sp38: Zona-pellucida- 54.7 10 0.00023 44.0 3.2 35 805-842 218-261 (271)
15 KOG4289 Cadherin EGF LAG seven 50.6 11 0.00023 51.7 2.8 87 1298-1395 2170-2257(2531)
16 KOG3973 Uncharacterized conser 50.1 56 0.0012 39.6 8.0 6 218-223 412-417 (465)
17 KOG4611 Uncharacterized conser 50.0 20 0.00042 43.1 4.5 65 817-885 51-126 (747)
18 KOG1836 Extracellular matrix g 46.6 18 0.00039 51.3 4.0 43 801-843 794-838 (1705)
19 smart00180 EGF_Lam Laminin-typ 46.0 12 0.00026 32.4 1.5 24 801-827 17-40 (46)
20 cd00055 EGF_Lam Laminin-type e 44.1 13 0.00029 32.5 1.5 27 800-829 17-43 (50)
21 PF12273 RCR: Chitin synthesis 42.4 21 0.00045 37.0 2.9 21 892-912 2-23 (130)
22 PF14946 DUF4501: Domain of un 38.4 1.3E+02 0.0027 33.4 7.9 38 887-924 83-122 (180)
23 PF15496 DUF4646: Domain of un 38.4 41 0.00088 35.1 4.2 72 983-1055 41-120 (123)
24 KOG4069 Uncharacterized conser 38.2 92 0.002 33.3 6.6 70 979-1052 45-125 (154)
25 KOG3973 Uncharacterized conser 37.7 1.2E+02 0.0026 37.0 8.2 6 361-366 153-158 (465)
26 PF00053 Laminin_EGF: Laminin 31.3 23 0.0005 30.6 0.9 21 809-829 22-42 (49)
27 PF15496 DUF4646: Domain of un 30.8 61 0.0013 33.8 4.0 24 1130-1153 45-68 (123)
28 PF05268 GP38: Phage tail fibr 28.1 1.1E+02 0.0024 35.3 5.7 38 218-256 113-152 (260)
29 cd00064 FU Furin-like repeats. 24.7 45 0.00096 28.8 1.6 20 808-827 19-41 (49)
30 KOG3915 Transcription regulato 23.5 1.2E+02 0.0026 38.1 5.3 32 161-192 63-94 (641)
31 PF05268 GP38: Phage tail fibr 22.9 1.4E+02 0.003 34.5 5.3 13 119-131 72-84 (260)
32 KOG4258 Insulin/growth factor 21.6 63 0.0014 43.1 2.6 23 954-976 411-433 (1025)
33 KOG4260 Uncharacterized conser 20.3 66 0.0014 38.0 2.2 28 809-838 132-159 (350)
No 1
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=96.01 E-value=0.006 Score=77.04 Aligned_cols=61 Identities=36% Similarity=0.805 Sum_probs=44.6
Q ss_pred cCCCCCcc----cccceeCCCCccccccCCCCCCcccCCCCCCCCcceEEeecCCccCCCCCccccCCCccC------Cc
Q 000507 807 KACPKGLY----GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHM------PH 876 (1458)
Q Consensus 807 k~CP~Gly----G~fC~eCP~GtYK~~sGs~~~lC~pCp~~~~p~ra~~iy~~gG~~~~~CpY~C~sdk~~~------p~ 876 (1458)
=-|-+||. +.-|+.||.||||...+ ...|.+||.+.... ....+.|. |..++|+. --
T Consensus 261 C~C~aGye~~~~~~~C~aCp~G~yK~~~~--~~~C~~CP~~S~s~---------~ega~~C~--C~~gyyRA~~Dp~~mp 327 (996)
T KOG0196|consen 261 CVCKAGYEEAENGKACQACPPGTYKASQG--DSLCLPCPPNSHSS---------SEGATSCT--CENGYYRADSDPPSMP 327 (996)
T ss_pred eeecCCCCcccCCCcceeCCCCcccCCCC--CCCCCCCCCCCCCC---------CCCCCccc--ccCCcccCCCCCCCCC
Confidence 45888883 77899999999999765 47899999754221 12347786 99999964 24
Q ss_pred ccch
Q 000507 877 CYTA 880 (1458)
Q Consensus 877 Cltp 880 (1458)
|.+|
T Consensus 328 CT~P 331 (996)
T KOG0196|consen 328 CTRP 331 (996)
T ss_pred CCCC
Confidence 7655
No 2
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=95.80 E-value=0.0048 Score=53.10 Aligned_cols=27 Identities=41% Similarity=1.057 Sum_probs=23.1
Q ss_pred ccceeCCCCccccccCCCCCCcccCCCCC
Q 000507 816 IFCEECPVGTYKNVTGSDKSLCHQCPPQE 844 (1458)
Q Consensus 816 ~fC~eCP~GtYK~~sGs~~~lC~pCp~~~ 844 (1458)
.-|++||.||||+..|. ..|.+||.+.
T Consensus 9 ~~C~~Cp~GtYq~~~g~--~~C~~Cp~g~ 35 (48)
T PF07699_consen 9 NKCQPCPKGTYQDEEGQ--TSCTPCPPGS 35 (48)
T ss_pred CccCCCCCCccCCccCC--ccCccCcCCC
Confidence 45999999999999885 5799999754
No 3
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=93.91 E-value=0.23 Score=49.96 Aligned_cols=67 Identities=22% Similarity=0.386 Sum_probs=46.6
Q ss_pred CCcchhhhhhchHHHHHHHHHHHhhhh--hhh--hhhHHHHhhHhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 000507 980 TPPEQIKEIVYEGAFNSFVDEINAIAT--YHW--WEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVR 1046 (1458)
Q Consensus 980 spP~~i~~IVyed~Fn~Fad~IN~laa--y~~--We~~iy~ILsvl~YPlaw~~lq~rRrkk~~rL~efv~ 1046 (1458)
.-|.++...+.+++|++++++||+..+ |.. |.-++-.+|.++..=+...+.....||++++|.+|+.
T Consensus 21 ~~P~~L~~~is~~ef~~iI~~IN~~l~~a~~~~~~~~~~~~~l~~lt~~l~~~~~~~~~~~~~~~le~~l~ 91 (118)
T PF10256_consen 21 EYPGELSGYISPEEFEEIINTINQILKEAFEPISWRNIIENILGCLTLGLSSLCFKTHYKRKLRELEKYLE 91 (118)
T ss_pred cCCHhhcCCCCHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467779999999999999999999873 222 4455555566654222222234556778899999997
No 4
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=91.17 E-value=0.29 Score=47.98 Aligned_cols=65 Identities=26% Similarity=0.571 Sum_probs=40.9
Q ss_pred EEccCCCCCcc---------cccceeCCCCccccccCCCCCCcccCCCCCCCCcceEEeecC-CccCCCCCccccCCCcc
Q 000507 804 TTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRG-GIAETPCPYRCISERYH 873 (1458)
Q Consensus 804 i~gk~CP~Gly---------G~fC~eCP~GtYK~~sGs~~~lC~pCp~~~~p~ra~~iy~~g-G~~~~~CpY~C~sdk~~ 873 (1458)
.-=+.||+|++ ...|++||.|+|...... ...|.+|+. .+ .+..+-... ..+.+.|- |.+++|-
T Consensus 12 ~cC~~C~pG~~~~~~C~~~~~t~C~~C~~g~ys~~~~~-~~~C~~c~~--C~-~g~~~~~~ct~t~dt~C~--C~~G~y~ 85 (98)
T cd00185 12 LCCDQCPPGTYLSKDCTPGSDTVCEPCPPGTYTDSWNH-LPKCLSCRT--CD-SGLVEKAPCTATRNTVCG--CKPGFYC 85 (98)
T ss_pred CCCCCCCCCccCCCcCCCCCCCeecCCCCCCcccCCCC-CCcCCcCcc--CC-CCCEEEccCCCCCCCeEe--CCCCCEe
Confidence 44578999986 356999999999886542 246777764 33 233332222 13334685 8888884
Q ss_pred C
Q 000507 874 M 874 (1458)
Q Consensus 874 ~ 874 (1458)
.
T Consensus 86 ~ 86 (98)
T cd00185 86 L 86 (98)
T ss_pred c
Confidence 4
No 5
>PF07562 NCD3G: Nine Cysteines Domain of family 3 GPCR; InterPro: IPR011500 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents a conserved sequence, found in the extracellular region, that contains several highly-conserved Cys residues that are predicted to form disulphide bridges.; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 2E4X_B 2E4Y_A 2E4U_B 2E4V_B 2E4W_A.
Probab=90.32 E-value=0.07 Score=47.47 Aligned_cols=36 Identities=33% Similarity=0.769 Sum_probs=19.9
Q ss_pred ccCCCCCccc----------ccceeCCCCccccccCCCCCCcccCCCC
Q 000507 806 GKACPKGLYG----------IFCEECPVGTYKNVTGSDKSLCHQCPPQ 843 (1458)
Q Consensus 806 gk~CP~GlyG----------~fC~eCP~GtYK~~sGs~~~lC~pCp~~ 843 (1458)
..+|++|++. +-|++||.|+|.+.+. ...|.+||.+
T Consensus 6 S~~C~pG~~k~~~~~~~~CCw~C~~C~~~~is~~~~--~~~C~~C~~~ 51 (54)
T PF07562_consen 6 SEPCPPGQRKKIQKGQPSCCWDCVPCPEGEISNQTD--STSCTKCPEG 51 (54)
T ss_dssp S----TTTEEEE--SSS-S--EEEE--TTEEEE--E--TTEEEE--TT
T ss_pred CCCCCCCCEECccCCCcceEEEeecCCCCcEECCCC--ccccccCCCc
Confidence 4689999862 3499999999999764 4789999974
No 6
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=89.03 E-value=0.35 Score=50.31 Aligned_cols=57 Identities=26% Similarity=0.578 Sum_probs=37.3
Q ss_pred CCCCCcc---cccceeCCCCccccccCC--CCCCcccCCCCCCCCcceEEeecCCccCCCCCccccC
Q 000507 808 ACPKGLY---GIFCEECPVGTYKNVTGS--DKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCIS 869 (1458)
Q Consensus 808 ~CP~Gly---G~fC~eCP~GtYK~~sGs--~~~lC~pCp~~~~p~ra~~iy~~gG~~~~~CpY~C~s 869 (1458)
.|..+-| +.-|.+||.|+|...-.+ ....|.|||.+++....++. -....|.-.|++
T Consensus 31 ~C~e~EY~~~~~CC~kCPPGt~v~~~Ct~~t~T~C~PCp~GTYTe~~N~~-----~~C~~C~~~Cd~ 92 (127)
T PHA02637 31 KCKDNEYKRHNLCCLSCPPGTYASRLCDIKTNTQCTPCGSGTFTSHNNHL-----PACLSCNGRCDR 92 (127)
T ss_pred CCCCCcCcCCCeEcCCCCCCCEEeCcCCCCCCcccccCCCCCeeccCCCC-----CcccccCCccCc
Confidence 6887755 344999999998874332 13579999987765544433 134567767765
No 7
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=85.44 E-value=0.61 Score=48.59 Aligned_cols=41 Identities=24% Similarity=0.617 Sum_probs=30.6
Q ss_pred CCceEEccCCCCCcc---------cccceeCCCCccccccCCCCCCcccCC
Q 000507 800 ENGTTTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCP 841 (1458)
Q Consensus 800 ~nGTi~gk~CP~Gly---------G~fC~eCP~GtYK~~sGs~~~lC~pCp 841 (1458)
..+..-=+.||+|++ ..-|.+||.|||...... ...|.+|.
T Consensus 38 ~~~~~CC~kCPPGt~v~~~Ct~~t~T~C~PCp~GTYTe~~N~-~~~C~~C~ 87 (127)
T PHA02637 38 KRHNLCCLSCPPGTYASRLCDIKTNTQCTPCGSGTFTSHNNH-LPACLSCN 87 (127)
T ss_pred cCCCeEcCCCCCCCEEeCcCCCCCCcccccCCCCCeeccCCC-CCcccccC
Confidence 446667789999985 667999999999875442 24577776
No 8
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=85.23 E-value=2.1 Score=55.95 Aligned_cols=37 Identities=27% Similarity=0.467 Sum_probs=19.5
Q ss_pred CCcccccccCCCccCCCCeEEEeeeeec----CCCeEEEeeeEEEEecCceE
Q 000507 66 PPSVSCTDDLDGIGTLDSTCQIVNDLNL----TRDVYICGKGNFEILTGVKF 113 (1458)
Q Consensus 66 ~~s~~C~~dl~g~Gs~~t~C~l~~~~~l----~~~~~i~G~G~l~i~~~v~l 113 (1458)
-.++||.. -.+.+++.| .+-|-..|.|-+.+++=.+|
T Consensus 1048 TRAIS~K~-----------MslVsPLQLLLF~SrKVqsdgq~IV~VDdWIkl 1088 (1282)
T KOG0921|consen 1048 TRAISCKQ-----------MSLVSPLQLLLFGSRKVQSDGQGIVRVDDWIKL 1088 (1282)
T ss_pred hheecccC-----------ccccChHHHhhhhhhhccccCcceEEeeceeeE
Confidence 34777771 234555444 33455556655555555444
No 9
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=82.61 E-value=1 Score=38.97 Aligned_cols=33 Identities=39% Similarity=0.910 Sum_probs=25.5
Q ss_pred CceEEccCCCCCcc----c-ccceeCCCCccccccCCC
Q 000507 801 NGTTTGKACPKGLY----G-IFCEECPVGTYKNVTGSD 833 (1458)
Q Consensus 801 nGTi~gk~CP~Gly----G-~fC~eCP~GtYK~~sGs~ 833 (1458)
.+.-.=.+||.|+| | ..|++||.|+|....|+.
T Consensus 6 ~~~~~C~~Cp~GtYq~~~g~~~C~~Cp~g~~T~~~Gs~ 43 (48)
T PF07699_consen 6 SGNNKCQPCPKGTYQDEEGQTSCTPCPPGSTTSSEGST 43 (48)
T ss_pred CCCCccCCCCCCccCCccCCccCccCcCCCccCCcCCc
Confidence 34445589999987 3 449999999998877764
No 10
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=69.77 E-value=2.5 Score=42.06 Aligned_cols=26 Identities=27% Similarity=0.547 Sum_probs=18.5
Q ss_pred ccceeCCCCccccccCCCCCCcccCCCCC
Q 000507 816 IFCEECPVGTYKNVTGSDKSLCHQCPPQE 844 (1458)
Q Consensus 816 ~fC~eCP~GtYK~~sGs~~~lC~pCp~~~ 844 (1458)
..|++|..|+|++..+ ..|.+|+.++
T Consensus 4 ~~Ct~C~~g~~~~~~~---~~C~~C~~~~ 29 (96)
T PTZ00382 4 AVCTSCDSDKKPNKDG---SGCVLCSVGN 29 (96)
T ss_pred cccCcCCCCCccCCCC---CcCCcCCCCC
Confidence 3688999998887433 5688888533
No 11
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=62.66 E-value=18 Score=48.00 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=10.3
Q ss_pred EEEEEEeEEeeeEEEec
Q 000507 566 QICRVEDIVVDGLVEGS 582 (1458)
Q Consensus 566 qi~rVedi~v~g~i~GS 582 (1458)
||||-+-..|+..|.-|
T Consensus 1135 dIs~pSAa~inLmig~~ 1151 (1282)
T KOG0921|consen 1135 DISRPSAADINLMIGDS 1151 (1282)
T ss_pred HhcccccccccceeccC
Confidence 46666666666666555
No 12
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=59.01 E-value=17 Score=36.67 Aligned_cols=64 Identities=16% Similarity=0.314 Sum_probs=46.0
Q ss_pred hcccCChhHHHHHHHHHHHHHHhh-hcc------------------------ccchhHHHHHHHHHHccCcccccCCeEE
Q 000507 1128 MSQLVPPTICYRLVAGLNAQLRLV-RRG------------------------RLRATFRPVLRWLETHANPTLQLHGLRV 1182 (1458)
Q Consensus 1128 ~~q~v~~~~w~rfVa~LN~qlR~v-~~g------------------------~lr~~l~~v~~~l~~h~n~~l~~~Gvrv 1182 (1458)
++..++++.|.++|..+|..|+.- ..- .-+..+..+-+||++.|++.++.+|+++
T Consensus 26 L~~~is~~ef~~iI~~IN~~l~~a~~~~~~~~~~~~~l~~lt~~l~~~~~~~~~~~~~~~le~~l~~~N~~~~~~~gi~i 105 (118)
T PF10256_consen 26 LSGYISPEEFEEIINTINQILKEAFEPISWRNIIENILGCLTLGLSSLCFKTHYKRKLRELEKYLEQLNEELFKPRGIKI 105 (118)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcEE
Confidence 566789999999999999999877 321 1223444567789888888999999865
Q ss_pred EEEEEEeecceeE
Q 000507 1183 DLAWFQATACGYC 1195 (1458)
Q Consensus 1183 ~L~~fqata~gy~ 1195 (1458)
-. .-.+||-
T Consensus 106 i~----pr~~g~l 114 (118)
T PF10256_consen 106 IS----PRRSGYL 114 (118)
T ss_pred Ec----hhHceEE
Confidence 32 3355554
No 13
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=55.96 E-value=12 Score=36.94 Aligned_cols=32 Identities=34% Similarity=1.062 Sum_probs=23.4
Q ss_pred cccceeCCCCccccccCC--CCCCcccCCCCCCC
Q 000507 815 GIFCEECPVGTYKNVTGS--DKSLCHQCPPQEFP 846 (1458)
Q Consensus 815 G~fC~eCP~GtYK~~sGs--~~~lC~pCp~~~~p 846 (1458)
+.-|..||+|+|-..... ....|.+|+.+.+.
T Consensus 11 ~~cC~~C~pG~~~~~~C~~~~~t~C~~C~~g~ys 44 (98)
T cd00185 11 GLCCDQCPPGTYLSKDCTPGSDTVCEPCPPGTYT 44 (98)
T ss_pred CCCCCCCCCCccCCCcCCCCCCCeecCCCCCCcc
Confidence 455999999999775432 23579999986643
No 14
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=54.72 E-value=10 Score=44.04 Aligned_cols=35 Identities=29% Similarity=0.590 Sum_probs=26.5
Q ss_pred EccCCCCCcc---------cccceeCCCCccccccCCCCCCcccCCC
Q 000507 805 TGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPP 842 (1458)
Q Consensus 805 ~gk~CP~Gly---------G~fC~eCP~GtYK~~sGs~~~lC~pCp~ 842 (1458)
+=..|+|||+ -.=|+-|++|||....+ ..|++|..
T Consensus 218 ~idsC~PGfG~N~~~h~~C~~CCVvCsPgTysp~~~---~~C~~C~~ 261 (271)
T PF07354_consen 218 RIDSCRPGFGKNDILHSDCPSCCVVCSPGTYSPDDD---VHCQQCNS 261 (271)
T ss_pred EeeccCCCCCcCcccCCCCCCeeEECCCcccCCCCC---ceEEecCc
Confidence 3356777775 12499999999998655 68999995
No 15
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=50.63 E-value=11 Score=51.65 Aligned_cols=87 Identities=24% Similarity=0.186 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHHHHHhcccccccCcccchhhhhcCCCCcc-ccccchhhhhhhhhH
Q 000507 1298 QDLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLVLFILPLGILLPFPAGINALFSHGPRRS-VGLARVYALWNVTSL 1376 (1458)
Q Consensus 1298 ~~~~~l~i~~lll~d~~l~ll~llq~y~is~~~~~~vl~~lpl~~~~p~~ag~nalfs~~~rrs-~~~~r~yalwn~~s~ 1376 (1458)
...|++.+..|||+=+.++++-.|---+.++..-|++-|-+ | +-+|.||.-+. +-++-+-+|--.+++
T Consensus 2170 ~a~~gvslaal~lt~~llls~RsLksn~~~I~~~l~~Al~l---------~--~L~Fv~gi~~nq~~CtvvailLhf~~~ 2238 (2531)
T KOG4289|consen 2170 YAAVGVSLAALLLTFLLLLSLRSLKSNSHGIHFNLAAALGL---------A--QLVFVLGINQNQFYCTVVAILLHFTYL 2238 (2531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhH---------H--HHHhhhhcccCchhhHHHHHHHHHHHh
Confidence 45677777777777777777777776666666544432211 2 22666666554 345566677788888
Q ss_pred HHHHHHhhhheeccccCCC
Q 000507 1377 INVGVAFLCGYVHYSSGSS 1395 (1458)
Q Consensus 1377 ~n~~~a~~~g~~~~~~~~~ 1395 (1458)
.-..=+|+.|+--|-|-..
T Consensus 2239 stFaWlfl~gLhlYRml~e 2257 (2531)
T KOG4289|consen 2239 STFAWLFLEGLHLYRMLTE 2257 (2531)
T ss_pred hhHHHHHHHHHHHHHHHhc
Confidence 8888889999877876543
No 16
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=50.06 E-value=56 Score=39.58 Aligned_cols=6 Identities=50% Similarity=1.016 Sum_probs=3.0
Q ss_pred cccCCC
Q 000507 218 WSYGSR 223 (1458)
Q Consensus 218 ~~~GSG 223 (1458)
|.-|||
T Consensus 412 ~~sgsg 417 (465)
T KOG3973|consen 412 WISGSG 417 (465)
T ss_pred eeeccc
Confidence 444554
No 17
>KOG4611 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.01 E-value=20 Score=43.11 Aligned_cols=65 Identities=31% Similarity=0.620 Sum_probs=42.7
Q ss_pred cceeCCCCccccccCCCCCCcccCCCCCC--CCcceEEeec-CC---ccCCCCCccccCCCccC-----CcccchHHHHH
Q 000507 817 FCEECPVGTYKNVTGSDKSLCHQCPPQEF--PHRAVYISVR-GG---IAETPCPYRCISERYHM-----PHCYTALEELI 885 (1458)
Q Consensus 817 fC~eCP~GtYK~~sGs~~~lC~pCp~~~~--p~ra~~iy~~-gG---~~~~~CpY~C~sdk~~~-----p~CltpleelI 885 (1458)
-|++||.||-.. .+..-|..|.++++ |.+..-++-. .| .....|- .|-+++|+. ..|-|+..|.-
T Consensus 51 tceecpegtlss---pdqtgclncnngtchcpsqstlifrdasgnlltndafcg-ncasgfyrndngyctkcetscsemn 126 (747)
T KOG4611|consen 51 TCEECPEGTLSS---PDQTGCLNCNNGTCHCPSQSTLIFRDASGNLLTNDAFCG-NCASGFYRNDNGYCTKCETSCSEMN 126 (747)
T ss_pred ccccCCCcccCC---CccCCceecCCCccCCCCcceEEEEcCCCCeeccccccc-cccccceECCCcccccccccHhhhc
Confidence 399999999754 34456999988764 5555555543 22 1223564 688999964 66777776653
No 18
>KOG1836 consensus Extracellular matrix glycoprotein Laminin subunits alpha and gamma [Extracellular structures]
Probab=46.62 E-value=18 Score=51.25 Aligned_cols=43 Identities=35% Similarity=0.688 Sum_probs=35.8
Q ss_pred CceEEccCCCCCcccccceeCCCCccccccCCC--CCCcccCCCC
Q 000507 801 NGTTTGKACPKGLYGIFCEECPVGTYKNVTGSD--KSLCHQCPPQ 843 (1458)
Q Consensus 801 nGTi~gk~CP~GlyG~fC~eCP~GtYK~~sGs~--~~lC~pCp~~ 843 (1458)
.-++.-|.||+||.|..|++|.-|+|=+..+-+ ...|++|+-+
T Consensus 794 ~~~~iCk~Cp~gytG~rCe~c~dgyfg~p~~~~~~~~~c~~c~c~ 838 (1705)
T KOG1836|consen 794 ILEVVCKNCPPGYTGLRCEECADGYFGNPLGHDGDVRPCQSCQCN 838 (1705)
T ss_pred ccceecCCCCCCCcccccccCCCccccCCCCCCCCcccCccceec
Confidence 667778999999999999999999998866532 2589999964
No 19
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=46.04 E-value=12 Score=32.41 Aligned_cols=24 Identities=29% Similarity=0.753 Sum_probs=20.1
Q ss_pred CceEEccCCCCCcccccceeCCCCccc
Q 000507 801 NGTTTGKACPKGLYGIFCEECPVGTYK 827 (1458)
Q Consensus 801 nGTi~gk~CP~GlyG~fC~eCP~GtYK 827 (1458)
+|.- .|++++.|..|.+|+.|+|-
T Consensus 17 ~G~C---~C~~~~~G~~C~~C~~g~~g 40 (46)
T smart00180 17 TGQC---ECKPNVTGRRCDRCAPGYYG 40 (46)
T ss_pred CCEE---ECCCCCCCCCCCcCCCCcCC
Confidence 4554 39999999999999999996
No 20
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=44.08 E-value=13 Score=32.47 Aligned_cols=27 Identities=26% Similarity=0.562 Sum_probs=22.1
Q ss_pred CCceEEccCCCCCcccccceeCCCCccccc
Q 000507 800 ENGTTTGKACPKGLYGIFCEECPVGTYKNV 829 (1458)
Q Consensus 800 ~nGTi~gk~CP~GlyG~fC~eCP~GtYK~~ 829 (1458)
.+|.- .|++++.|..|.+|+.|+|...
T Consensus 17 ~~G~C---~C~~~~~G~~C~~C~~g~~~~~ 43 (50)
T cd00055 17 GTGQC---ECKPNTTGRRCDRCAPGYYGLP 43 (50)
T ss_pred CCCEE---eCCCcCCCCCCCCCCCCCccCC
Confidence 45555 3999999999999999999653
No 21
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=42.36 E-value=21 Score=36.95 Aligned_cols=21 Identities=29% Similarity=0.809 Sum_probs=8.7
Q ss_pred ch-hhHHHHHHHHHHHHHHHHh
Q 000507 892 WL-FCLLLVGLLILLALVLSVA 912 (1458)
Q Consensus 892 ~~-F~lll~~lliLlalvls~~ 912 (1458)
|. |+||+++++++|+++....
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHH
Confidence 53 4344444444444444333
No 22
>PF14946 DUF4501: Domain of unknown function (DUF4501)
Probab=38.40 E-value=1.3e+02 Score=33.42 Aligned_cols=38 Identities=34% Similarity=0.509 Sum_probs=24.1
Q ss_pred HhCCcchhhHHHH-HHHHHHHHHHHHhhhe-ecccCCCCC
Q 000507 887 TFGGPWLFCLLLV-GLLILLALVLSVARMK-FVGVDELPG 924 (1458)
Q Consensus 887 tfGGp~~F~lll~-~lliLlalvls~~R~k-~~~~d~l~~ 924 (1458)
.+|||+..+=+++ .|+|-++++++++-.- ++...++|.
T Consensus 83 ~~g~P~vAASL~LgTffIS~~LilSvA~FFYLKrs~kLP~ 122 (180)
T PF14946_consen 83 HTGGPQVAASLFLGTFFISLGLILSVASFFYLKRSSKLPH 122 (180)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHhhheeecccccCCc
Confidence 4699985544444 6677788888877543 344455654
No 23
>PF15496 DUF4646: Domain of unknown function (DUF4646)
Probab=38.38 E-value=41 Score=35.06 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=49.2
Q ss_pred chhhhhhchHHHHHHHHHHHhhhhhhhhhhHHHHhhH--------hhhchhhHHHHHHHHHHHHHHHHHHHHhhcCchhh
Q 000507 983 EQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILA--------ILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACL 1054 (1458)
Q Consensus 983 ~~i~~IVyed~Fn~Fad~IN~laay~~We~~iy~ILs--------vl~YPlaw~~lq~rRrkk~~rL~efv~seydh~cl 1054 (1458)
+=...=|.++++.+|.++++.-++.+-+|.++-...- +..|=.++.....+.+||-..+.++|. ..++.+|
T Consensus 41 ~l~~~DVs~eDW~~F~~dl~~aa~ls~~~~~~~~~~~~~~~v~~Gi~~~~v~~~~~~~~~~~k~~~v~~~i~-~WN~~FF 119 (123)
T PF15496_consen 41 PLASHDVSEEDWTRFLNDLSEAASLSPSQSIVAGVGPIVMGVGFGIPAYLVAKAIRKAMKEKKRGEVESTID-QWNEGFF 119 (123)
T ss_pred hhhhcCCCHHHHHHHHHHHHHHHhcCcccceeeeeccccccccccchhhhhhHhhhhcccccchHHHHHHHH-HHHHHhc
Confidence 3344557889999999999999888877754333211 234444555666777778888889887 4666665
Q ss_pred c
Q 000507 1055 R 1055 (1458)
Q Consensus 1055 r 1055 (1458)
+
T Consensus 120 ~ 120 (123)
T PF15496_consen 120 R 120 (123)
T ss_pred c
Confidence 4
No 24
>KOG4069 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.18 E-value=92 Score=33.31 Aligned_cols=70 Identities=20% Similarity=0.399 Sum_probs=48.3
Q ss_pred CCCcchhhhhhchHHHHHHHHHHHhhhhh-------hhhhhHHHHhhHhhhchhhHHHHHHHHHHHHHHHHHHHHhh---
Q 000507 979 HTPPEQIKEIVYEGAFNSFVDEINAIATY-------HWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSE--- 1048 (1458)
Q Consensus 979 ~spP~~i~~IVyed~Fn~Fad~IN~laay-------~~We~~iy~ILsvl~YPlaw~~lq~rRrkk~~rL~efv~se--- 1048 (1458)
...|..+++.|..+.|+.=+..+|++-|= +.+|+.+- ++.+|-.|.--.. --+||+++|+||+.++
T Consensus 45 ~~~pa~le~~i~R~vfE~Ti~rlN~~yAeAE~~~~qty~Egclg---C~TaY~iy~ctet-hYek~L~klskfl~~qNe~ 120 (154)
T KOG4069|consen 45 AEYPARLEEKIPRDVFENTIVRLNRIYAEAEAITPQTYFEGCLG---CFTAYAIYACTET-HYEKKLDKLSKFLNRQNEE 120 (154)
T ss_pred ecCcHHHhccCcHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhh
Confidence 35789999999999999999999998432 13555443 4555555443333 2357899999999843
Q ss_pred -cCch
Q 000507 1049 -YDHA 1052 (1458)
Q Consensus 1049 -ydh~ 1052 (1458)
|.|.
T Consensus 121 IY~~~ 125 (154)
T KOG4069|consen 121 IYHHV 125 (154)
T ss_pred hcccc
Confidence 6654
No 25
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=37.70 E-value=1.2e+02 Score=36.99 Aligned_cols=6 Identities=67% Similarity=1.475 Sum_probs=3.1
Q ss_pred cCCCCc
Q 000507 361 EFPNQP 366 (1458)
Q Consensus 361 ~fp~~p 366 (1458)
.||.+|
T Consensus 153 ~~~k~p 158 (465)
T KOG3973|consen 153 NFPKQP 158 (465)
T ss_pred CCCCCC
Confidence 455555
No 26
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=31.26 E-value=23 Score=30.64 Aligned_cols=21 Identities=29% Similarity=0.689 Sum_probs=17.4
Q ss_pred CCCCcccccceeCCCCccccc
Q 000507 809 CPKGLYGIFCEECPVGTYKNV 829 (1458)
Q Consensus 809 CP~GlyG~fC~eCP~GtYK~~ 829 (1458)
|++++.|..|.+|..|+|...
T Consensus 22 C~~~~~G~~C~~C~~g~~~~~ 42 (49)
T PF00053_consen 22 CKPGTTGPRCDQCKPGYFGLP 42 (49)
T ss_dssp BSTTEESTTS-EE-TTEECST
T ss_pred ccccccCCcCcCCCCcccccc
Confidence 999999999999999999764
No 27
>PF15496 DUF4646: Domain of unknown function (DUF4646)
Probab=30.81 E-value=61 Score=33.82 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=19.1
Q ss_pred ccCChhHHHHHHHHHHHHHHhhhc
Q 000507 1130 QLVPPTICYRLVAGLNAQLRLVRR 1153 (1458)
Q Consensus 1130 q~v~~~~w~rfVa~LN~qlR~v~~ 1153 (1458)
-.|..+.|.||+.+|+.--++-..
T Consensus 45 ~DVs~eDW~~F~~dl~~aa~ls~~ 68 (123)
T PF15496_consen 45 HDVSEEDWTRFLNDLSEAASLSPS 68 (123)
T ss_pred cCCCHHHHHHHHHHHHHHHhcCcc
Confidence 369999999999999998444443
No 28
>PF05268 GP38: Phage tail fibre adhesin Gp38; InterPro: IPR007932 This entry is represented by Bacteriophage T2, Gp38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains several Gp38 proteins from T-even-like phages. Gp38, together with a second phage protein, Gp57, catalyses the organisation of Gp37 but is absent from the phage particle. Gp37 is responsible for receptor recognition [].
Probab=28.14 E-value=1.1e+02 Score=35.27 Aligned_cols=38 Identities=29% Similarity=0.432 Sum_probs=21.7
Q ss_pred cccCCCCCCCCCCCCCCcCCccEEEEEEeeeEee--ccEEE
Q 000507 218 WSYGSRGGTTSQEFDYGGGGGGRIKMVIDEYVVL--DGSIS 256 (1458)
Q Consensus 218 ~~~GSGGG~g~~~~~~GGaGGG~I~i~a~~~l~l--~G~i~ 256 (1458)
..+|.||- ++.+...+.+||=+|+=.....|.+ +|.|.
T Consensus 113 t~yGRGGn-Gs~~~~~g~~GG~~I~N~iG~rLRI~N~GaIA 152 (260)
T PF05268_consen 113 TMYGRGGN-GSGSNSAGAAGGHAIQNDIGGRLRINNNGAIA 152 (260)
T ss_pred EEEecCCC-CCCCCCCccccceeeecCCcceEEEecCCEEe
Confidence 34566553 3445567888888887444444443 55554
No 29
>cd00064 FU Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
Probab=24.69 E-value=45 Score=28.75 Aligned_cols=20 Identities=50% Similarity=1.080 Sum_probs=9.1
Q ss_pred CCCCCc--ccccce-eCCCCccc
Q 000507 808 ACPKGL--YGIFCE-ECPVGTYK 827 (1458)
Q Consensus 808 ~CP~Gl--yG~fC~-eCP~GtYK 827 (1458)
.|++++ .+..|+ +||.++|.
T Consensus 19 ~C~~~~~~~~~~Cv~~C~~~~~~ 41 (49)
T cd00064 19 SCRHGFYLDGGTCVSECPEGTYA 41 (49)
T ss_pred cCcCccCCCCCcccccCCCCcee
Confidence 444444 233444 45555444
No 30
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=23.51 E-value=1.2e+02 Score=38.07 Aligned_cols=32 Identities=41% Similarity=0.740 Sum_probs=15.7
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 000507 161 TGLAGAPPPQTSGTPQGIEGGGGGHGGRGACC 192 (1458)
Q Consensus 161 SGlG~~pg~g~gG~~~~~~G~GGGHGG~GG~g 192 (1458)
++-|+.++.-++|..+...|++++|+|+|-.|
T Consensus 63 ~~~g~~g~~s~~g~~s~~~gg~~~~~g~gssc 94 (641)
T KOG3915|consen 63 TGGGGGGGGSGGGGGSSGNGGGGGGGGGGSSC 94 (641)
T ss_pred ccCCCCCCCCCCCccccCCCCCCCCCCCcccc
Confidence 44443333322333344455666666666666
No 31
>PF05268 GP38: Phage tail fibre adhesin Gp38; InterPro: IPR007932 This entry is represented by Bacteriophage T2, Gp38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains several Gp38 proteins from T-even-like phages. Gp38, together with a second phage protein, Gp57, catalyses the organisation of Gp37 but is absent from the phage particle. Gp37 is responsible for receptor recognition [].
Probab=22.95 E-value=1.4e+02 Score=34.48 Aligned_cols=13 Identities=38% Similarity=0.698 Sum_probs=7.2
Q ss_pred CceEEEEeeeeEE
Q 000507 119 GCSIAVNISGNFT 131 (1458)
Q Consensus 119 gC~i~vN~Sg~ft 131 (1458)
.-||.+|+++++-
T Consensus 72 saPiV~~ITG~lV 84 (260)
T PF05268_consen 72 SAPIVFNITGNLV 84 (260)
T ss_pred CCCEEEEecccee
Confidence 3456666655543
No 32
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=21.64 E-value=63 Score=43.07 Aligned_cols=23 Identities=13% Similarity=0.358 Sum_probs=13.0
Q ss_pred cccccceEeEEEecCCCCCCCcc
Q 000507 954 EESHSHVHRMYFMGPNTFSQPWH 976 (1458)
Q Consensus 954 EDL~~Hv~RmYf~G~NT~~~PW~ 976 (1458)
+.|-.--+-+|+.=|-..++=|-
T Consensus 411 d~l~~~~Ys~yv~dN~nL~qLwd 433 (1025)
T KOG4258|consen 411 DPLEEGNYSFYVLDNQNLQQLWD 433 (1025)
T ss_pred chhhcCceEEEEecCcCHHhcCC
Confidence 45555566666666555555443
No 33
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.31 E-value=66 Score=37.98 Aligned_cols=28 Identities=43% Similarity=1.030 Sum_probs=0.0
Q ss_pred CCCCcccccceeCCCCccccccCCCCCCcc
Q 000507 809 CPKGLYGIFCEECPVGTYKNVTGSDKSLCH 838 (1458)
Q Consensus 809 CP~GlyG~fC~eCP~GtYK~~sGs~~~lC~ 838 (1458)
||+|.||.-|.+||-|+=+.-.| .+.|+
T Consensus 132 Cp~gtyGpdCl~Cpggser~C~G--nG~C~ 159 (350)
T KOG4260|consen 132 CPDGTYGPDCLQCPGGSERPCFG--NGSCH 159 (350)
T ss_pred cCCCCcCCccccCCCCCcCCcCC--CCccc
Done!