Query 000507
Match_columns 1458
No_of_seqs 202 out of 206
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 16:34:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000507.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_281-285//hhsearch_pdb/000507hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fl7_A Ephrin receptor; ATP-bi 1.0 1 1 44.1 3.5 36 807-844 265-302 (536)
2 2e4u_A Metabotropic glutamate 1.0 1 1 37.9 0.5 40 804-847 484-532 (555)
3 3u3p_A Tumor necrosis factor r 1.0 1 1 36.0 3.7 35 806-841 26-69 (313)
4 1jma_B Herpesvirus entry media 1.0 1 1 35.1 4.2 64 805-873 15-89 (167)
5 2uwi_A CRME protein; receptor, 1.0 1 1 33.9 3.9 64 804-873 15-89 (142)
6 2hey_R Tumor necrosis factor r 1.0 1 1 33.8 3.2 62 806-873 19-91 (146)
7 3me4_A Tumor necrosis factor r 1.0 1 1 33.7 3.8 68 801-873 41-119 (216)
8 3alq_R Tumor necrosis factor r 1.0 1 1 33.4 3.8 65 804-873 20-94 (173)
9 1du3_A Death receptor 5; trail 1.0 1 1 33.3 4.2 67 802-874 21-93 (130)
10 1ext_A Tumor necrosis factor r 1.0 1 1 32.9 3.6 65 805-873 19-94 (162)
No 1
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=1.00 E-value=1 Score=44.11 Aligned_cols=36 Identities=28% Similarity=0.630 Sum_probs=29.5
Q ss_pred CCCCCCCC--CCCCEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68999866--644211899841254699998741289999
Q 000507 807 KACPKGLY--GIFCEECPVGTYKNVTGSDKSLCHQCPPQE 844 (1458)
Q Consensus 807 k~CP~Gly--G~fC~eCP~GtYK~~sGs~~~lC~pCp~~~ 844 (1458)
=.|.+||. +..|+.||.|+||...+ ...|.+||.+.
T Consensus 265 C~C~~G~e~~~~~C~aC~~g~~k~~~~--~~~C~~CP~~S 302 (536)
T 3fl7_A 265 CLCQAGYEKVEDACQACSPGFFKFEAS--ESPCLECPEHT 302 (536)
T ss_dssp CEECTTEEEETTEEEECCTTEECCSCC--SSCCEECCSSE
T ss_pred EECCCCCCCCCCEEEECCCCCCCCCCC--CCCCCCCCCCC
T ss_conf 766676446996554258998766678--98500688877
No 2
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=1.00 E-value=1 Score=37.93 Aligned_cols=40 Identities=23% Similarity=0.571 Sum_probs=29.8
Q ss_pred EECCCCCCCCCC---------CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 985689998666---------44211899841254699998741289999888
Q 000507 804 TTGKACPKGLYG---------IFCEECPVGTYKNVTGSDKSLCHQCPPQEFPH 847 (1458)
Q Consensus 804 i~gk~CP~GlyG---------~fC~eCP~GtYK~~sGs~~~lC~pCp~~~lp~ 847 (1458)
+-...||||+.+ +-|++||.|.+. + |...|.+||.+..|+
T Consensus 484 ~CS~~C~pG~rk~~~~g~~CC~~C~~C~~~~~~--t--d~~~C~~Cp~~~wpn 532 (555)
T 2e4u_A 484 QCSDPCAPNEMKNMQPGDVCCWICIPCEPYEYL--V--DEFTCMDCGPGQWPT 532 (555)
T ss_dssp CSSCCCCTTTEEEECCSSSSCCEEEECCTTEEE--E--ETTEEEECCTTEEEC
T ss_pred EECCCCCCCEEEEECCCCEEEEECCCCCCCEEC--C--CCCCCEECCCCCCCC
T ss_conf 317977998055405897368978657775003--7--786644688323769
No 3
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=1.00 E-value=1 Score=36.00 Aligned_cols=35 Identities=37% Similarity=0.922 Sum_probs=19.1
Q ss_pred CCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 568999866---------644211899841254699998741289
Q 000507 806 GKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCP 841 (1458)
Q Consensus 806 gk~CP~Gly---------G~fC~eCP~GtYK~~sGs~~~lC~pCp 841 (1458)
=..||+|.| ...|++||.|+|+.... ....|.+|.
T Consensus 26 C~~CpPGtyv~~~Ct~~~dt~C~pCp~GtYt~~~N-~~~~C~~C~ 69 (313)
T 3u3p_A 26 CDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHEN-GIEKCHDCS 69 (313)
T ss_dssp EECBCTTEEEEECCBTTBCCEEEECCTTEECCSCB-CCSSCEECC
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCC-CCCCCCCCC
T ss_conf 88979993266767899997431699985602688-788081446
No 4
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=1.00 E-value=1 Score=35.05 Aligned_cols=64 Identities=27% Similarity=0.529 Sum_probs=39.6
Q ss_pred ECCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEEC-CCCCCCCCCCCCCCCCCC
Q ss_conf 8568999866---------6442118998412546999987412899998886-1378622-884588887422378756
Q 000507 805 TGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHR-AVYISVR-GGIAETPCPYRCISERYH 873 (1458)
Q Consensus 805 ~gk~CP~Gly---------G~fC~eCP~GtYK~~sGs~~~lC~pCp~~~lp~r-a~~iy~~-gG~~~~~CpY~C~sdk~~ 873 (1458)
.=+.||+|+| ...|++||.|+|+...+. ...|.+|+. -+.. +.+.... .....+.| .|.+++|.
T Consensus 15 ~C~~CppG~~~~~~C~~~~~t~C~~Cp~GtY~~~~n~-~~~C~~C~~--C~~~~g~~~~~~Ct~t~~t~C--~C~~G~y~ 89 (167)
T 1jma_B 15 CCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNG-LSKCLQCQM--CDPAMGLRASRNCSRTENAVC--GCSPGHFC 89 (167)
T ss_dssp CCBCBCTTEEEEECCCSSSCCEEEECCTTEECSSCBC-SSCCEECCC--CCTTTTEEEEECCCSSSCCEE--EECTTEEE
T ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC--CCCCCCEEEECCCCCCCCCCC--CCCCCCEE
T ss_conf 8888899987656789999985772989951366676-763648744--566788688556788888700--38999652
No 5
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=1.00 E-value=1 Score=33.94 Aligned_cols=64 Identities=25% Similarity=0.585 Sum_probs=40.3
Q ss_pred EECCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC--CCCCCCCCCCCCCCCCC
Q ss_conf 98568999866---------64421189984125469999874128999988861378622--88458888742237875
Q 000507 804 TTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVR--GGIAETPCPYRCISERY 872 (1458)
Q Consensus 804 i~gk~CP~Gly---------G~fC~eCP~GtYK~~sGs~~~lC~pCp~~~lp~ra~~iy~~--gG~~~~~CpY~C~sdk~ 872 (1458)
.-=+.||||.+ ...|++||.|+|...... ...|.+|..-. + ...+-++ -....+.| .|.+++|
T Consensus 15 ~cC~~CppG~~~~~~C~~~~~t~C~pC~~gty~~~~n~-~~~C~~C~~C~-~--~~~~~~~~Ct~t~dtvC--~C~~G~y 88 (142)
T 2uwi_A 15 KCCKLCKPGTYSDHRCDKYSDTICGHCPSDTFTSIYNR-SPWCHSCRGPC-G--TNRVEVTPCTPTTNRIC--HCDSNSY 88 (142)
T ss_dssp EEEECBCTTEEEEECCCSSCCCEEEECCTTEECCSSBC-CSSCEECCCCC-C--TTEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC-C--CCEEEEECCCCCCCCEE--ECCCCCE
T ss_conf 88878988974676688998975675899977456898-98467876705-6--88567615989879981--1899968
Q ss_pred C
Q ss_conf 6
Q 000507 873 H 873 (1458)
Q Consensus 873 ~ 873 (1458)
.
T Consensus 89 c 89 (142)
T 2uwi_A 89 C 89 (142)
T ss_dssp E
T ss_pred E
T ss_conf 5
No 6
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=1.00 E-value=1 Score=33.75 Aligned_cols=62 Identities=24% Similarity=0.440 Sum_probs=38.3
Q ss_pred CCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEEC-CCCCCCCCCCCCCCCCCC
Q ss_conf 568999866---------6442118998412546999987412899998886-1378622-884588887422378756
Q 000507 806 GKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHR-AVYISVR-GGIAETPCPYRCISERYH 873 (1458)
Q Consensus 806 gk~CP~Gly---------G~fC~eCP~GtYK~~sGs~~~lC~pCp~~~lp~r-a~~iy~~-gG~~~~~CpY~C~sdk~~ 873 (1458)
=+.||+|.| ...|++||.|+|....+. ..|.+|+. -+.. +.++... .....+.| .|.+++|.
T Consensus 19 C~~C~pG~~~~~~Ct~~~~t~C~~C~~gty~~~~~~--~~C~~C~~--C~~~~g~~~~~~Ct~t~dt~C--~C~~G~y~ 91 (146)
T 2hey_R 19 CHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSS--KPCKPCTW--CNLRSGSERKQLCTATQDTVC--RCRAGTQP 91 (146)
T ss_dssp EECBCTTEEEEECCCSSCCCEEEECCTTEECCSCBS--SCCEECCC--CCGGGTEEEEECCBTTBCCEE--EECTTEEE
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCCC--CCCCCCCC--CCCCCCCEEECCCCCCCCCCC--CCCCCEEE
T ss_conf 989898970405578998987554999888788888--74866687--887778367616766778644--47787060
No 7
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=1.00 E-value=1 Score=33.68 Aligned_cols=68 Identities=18% Similarity=0.320 Sum_probs=40.9
Q ss_pred CCEEECCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC--CCCCCCCCCCCC
Q ss_conf 96198568999866---------6442118998412546999987412899998886137862288--458888742237
Q 000507 801 NGTTTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG--IAETPCPYRCIS 869 (1458)
Q Consensus 801 nGTi~gk~CP~Gly---------G~fC~eCP~GtYK~~sGs~~~lC~pCp~~~lp~ra~~iy~~gG--~~~~~CpY~C~s 869 (1458)
.+..-=+.||+|+| ...|++||.|+|+...+. ...|.+|+. -........++.. ...+.| .|.+
T Consensus 41 ~~~~CC~~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n~-~~~C~~C~~--C~~~~~~~~~~~Ct~t~dtvC--~C~~ 115 (216)
T 3me4_A 41 HLGRCCSRCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWNE-EDKCLLHKV--CDAGKALVAVDPGNHTAPRRC--ACTA 115 (216)
T ss_dssp ETTEEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSSBC-CSSCEECCC--CCGGGTEEEESTTCSSSCCEE--EECT
T ss_pred CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCCC-CCCCCCCCC--CCCCCCEEEEECCCCCCCCCC--CCCC
T ss_conf 67888689998955635689999982032899976257898-876978888--788757688724778888502--5879
Q ss_pred CCCC
Q ss_conf 8756
Q 000507 870 ERYH 873 (1458)
Q Consensus 870 dk~~ 873 (1458)
|+|.
T Consensus 116 G~y~ 119 (216)
T 3me4_A 116 GYHW 119 (216)
T ss_dssp TEEE
T ss_pred CEEC
T ss_conf 9470
No 8
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=33.40 Aligned_cols=65 Identities=17% Similarity=0.352 Sum_probs=39.0
Q ss_pred EECCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC-CCCCCCCCCCCCCCCCCC
Q ss_conf 98568999866---------64421189984125469999874128999988861378622-884588887422378756
Q 000507 804 TTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVR-GGIAETPCPYRCISERYH 873 (1458)
Q Consensus 804 i~gk~CP~Gly---------G~fC~eCP~GtYK~~sGs~~~lC~pCp~~~lp~ra~~iy~~-gG~~~~~CpY~C~sdk~~ 873 (1458)
.-=+.||+|+| ...|++||.|+|+...+. ...|.+|... -+. +.+.... .....+.| .|.+++|.
T Consensus 20 ~cC~~C~pG~~~~~~C~~~~~t~C~~C~~gty~~~~n~-~~~C~~C~~~-C~~-g~~~~~~Ct~t~d~~C--~C~~G~y~ 94 (173)
T 3alq_R 20 MCCSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNW-VPECLSCGSR-CSS-DQVETQACTREQNRIC--TCRPGWYC 94 (173)
T ss_dssp EEEECBCTTEEEEECCCSSCCCEEEECCTTEECCSSBC-CSSCEECCCC-CCT-TEEEEECCCSSSCCEE--EECTTEEE
T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC-CCC-CCEEECCCCCCCCCEE--ECCCCEEE
T ss_conf 68988987985566688999880776999964167998-9805889884-799-9788447889879946--77898574
No 9
>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R 1d4v_A
Probab=1.00 E-value=1 Score=33.29 Aligned_cols=67 Identities=19% Similarity=0.400 Sum_probs=42.7
Q ss_pred CEEECCCCCCCCC----CCCCEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 6198568999866----6442118998-4125469999874128999988861378622-8845888874223787568
Q 000507 802 GTTTGKACPKGLY----GIFCEECPVG-TYKNVTGSDKSLCHQCPPQEFPHRAVYISVR-GGIAETPCPYRCISERYHM 874 (1458)
Q Consensus 802 GTi~gk~CP~Gly----G~fC~eCP~G-tYK~~sGs~~~lC~pCp~~~lp~ra~~iy~~-gG~~~~~CpY~C~sdk~~~ 874 (1458)
....-..||+|.| ...|++||.| +|...... ...|.+|.. -+. +.++-.. .....+.|. |.+|+|..
T Consensus 21 ~~~~C~~CppG~~~~~~~t~C~pC~~g~ty~~~~n~-~~~C~~C~~--C~~-g~~~~~~Ct~t~dtvC~--C~~G~y~~ 93 (130)
T 1du3_A 21 SSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWND-LLFCLRCTR--CDS-GEVELSPCTTTRNTVCQ--CEEGTFRE 93 (130)
T ss_dssp CCCBTTBBCTTEEECSSSSCEEECCTTTEECCSSBC-CSSCEECCC--CCT-TEEEEECCCSSSCCEEE--ECTTCEEE
T ss_pred CCCCCCCCCCCCEECCCCCCCCCCCCCCEEECCCCC-CCCCCCCCC--CCC-CEEEECCCCCCCCCEEC--CCCCEEEC
T ss_conf 797058889986144899867209896987388998-771867777--885-20565367788899851--99996879
No 10
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Probab=1.00 E-value=1 Score=32.94 Aligned_cols=65 Identities=22% Similarity=0.446 Sum_probs=37.0
Q ss_pred ECCCCCCCCC----------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC-CCCCCCCCCCCCCCCCCC
Q ss_conf 8568999866----------64421189984125469999874128999988861378622-884588887422378756
Q 000507 805 TGKACPKGLY----------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVR-GGIAETPCPYRCISERYH 873 (1458)
Q Consensus 805 ~gk~CP~Gly----------G~fC~eCP~GtYK~~sGs~~~lC~pCp~~~lp~ra~~iy~~-gG~~~~~CpY~C~sdk~~ 873 (1458)
-=+.||+|+| ...|++||.|+|....++ ...|.+|..=. +..+.+.-.. .....+.| .|.+++|.
T Consensus 19 CC~~CppG~~~~~~Ct~~~~~t~C~~C~~gty~~~~n~-~~~C~~C~~C~-~~~~~~~~~~Ct~t~dt~C--~C~~G~y~ 94 (162)
T 1ext_A 19 CCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENH-LRHCLSCSKCR-KEMGQVEISSCTVDRDTVC--GCRKNQYR 94 (162)
T ss_dssp EEECBCTTEEEEECCSSTTSCCEEEECCTTEECCSSBC-CSSCEECCCCC-GGGTCEEEECCBTTBCCEE--ECCTTEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC-CCCCEEEEECCCCCCCCCC--CCCCCCEE
T ss_conf 99889998604566678888961333989865146677-77552437887-7789788713668888786--59898524
Done!