BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000509
(1456 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60306|AQR_HUMAN Intron-binding protein aquarius OS=Homo sapiens GN=AQR PE=1 SV=4
Length = 1485
Score = 1231 bits (3186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 657/1386 (47%), Positives = 884/1386 (63%), Gaps = 158/1386 (11%)
Query: 46 TLSEIQRDRLTKIASENW---LKTEKPFDAELVKEIYRTELTVKEGRKTVPLHRVMILEV 102
T+S+I + +T++A + W +K + PFD +++++IY E+ + + ++M+LE
Sbjct: 14 TVSQINAEFVTQLACKYWAPHIKKKSPFDIKVIEDIYEKEIV----KSRFAIRKIMLLEF 69
Query: 103 SQYLENYLWPNFDAETAS-----------------------------------FEHVMSM 127
SQYLENYLW N+ E +S F+H++
Sbjct: 70 SQYLENYLWMNYSPEVSSKAYLMSICCMVNEKFRENVPAWEIFKKKPDHFPFFFKHILKA 129
Query: 128 ILMVNE-------------------KSLEDEIVSKTVLRLASLQSWHSLSYGRFQMELCL 168
L + SLE +++ V +L SL W L R ++EL
Sbjct: 130 ALAETDGEFSLHEQTVLLLFLDHCFNSLEVDLIRSQVQQLISLPMWMGLQLARLELELKK 189
Query: 169 NPDLIKKWKRMVKREFKEAMKRGEPFDP----SAMLEVKFLRNFIEEFLEVLENEVFVQR 224
P L K W + K + E DP A E +FL I++F+ VL++ +
Sbjct: 190 TPKLRKFWNLIKKND--------EKMDPEAREQAYQERRFLSQLIQKFISVLKSVPLSEP 241
Query: 225 HHVNNEDDHADANSFLQPNDACVLYCERFMEFLIDLLSQLPTRRYLRPLVADLAIVAKCH 284
++ V YCERF+E +IDL + LPTRR+ ++ D ++ C+
Sbjct: 242 VTMDK-----------------VHYCERFIELMIDLEALLPTRRWFNTILDDSHLLVHCY 284
Query: 285 LSTLYRHEK-GKLFAQLVDLLQFYEKFEINDHVGKQLTDDEVLQSHYDRFQSFQLLAFKK 343
LS L R E+ G LF+QL+D+L+FY FEIND G LT++E+ HYDR S Q AF
Sbjct: 285 LSNLVRREEDGHLFSQLLDMLKFYTGFEINDQTGNALTENEMTTIHYDRITSLQRAAFAH 344
Query: 344 IPKLQELALANIGSIHKRADLSKRLSVLS---LKELQDLVCCKLKLLSSKDPWLDSYDFL 400
P+L + AL+N+ + R L K LS L ++ +C L ++D D +FL
Sbjct: 345 FPELYDFALSNVAEVDTRESLVKFFGPLSSNTLHQVASYLCLLPTLPKNEDTTFDK-EFL 403
Query: 401 VEVIVSFFEKQQSQKEAINALPLYPNEQIMWDESLVPSINYSGEGCLALPKLNLQFLTLH 460
+E++VS E++ SQ + +N +PLYP E+I+WDE++VP+ YSGEGCLALPKLNLQFLTLH
Sbjct: 404 LELLVSRHERRISQIQQLNQMPLYPTEKIIWDENIVPTEYYSGEGCLALPKLNLQFLTLH 463
Query: 461 DYLLRNFNLFRLESTYEIREDIQEAVPHLLAYINNEGEAAFRGWSRMAVPIKEFKITEVK 520
DYLLRNFNLFRLESTYEIR+DI+++V + + + G F GW+RMA PI F + EV
Sbjct: 464 DYLLRNFNLFRLESTYEIRQDIEDSVSRMKPWQSEYGGVVFGGWARMAQPIVAFTVVEVA 523
Query: 521 QPNIGEVKPSSVTAAITFSISSYKAHVRSEWNALKEHDVLFLLSIRPSFEPLSAEEAAKA 580
+PNIGE P+ V A +T +++ + H++ EW L++HDV FL+++RP+ +P + +
Sbjct: 524 KPNIGENWPTRVRADVTINLN-VRDHIKDEWEGLRKHDVCFLITVRPT-KPYGTKFDRRR 581
Query: 581 SVPQKLGLQCVRGCEIIEIRDEDGTLMNDFTGRIKRDEWKPP-KGELRTVTVALDTAQYH 639
+++GL VRGCEI + D+ G ++ D E +P +GE RT V LD QY
Sbjct: 582 PFIEQVGLVYVRGCEIQGMLDDKGRVIED------GPEPRPNLRGESRTFRVFLDPNQYQ 635
Query: 640 MDVTDIAEKGAEDAYGTFNVLMRRKPKENNFKAILESIRDLMNEYCIVPDWLHNIFLGYG 699
D+T+ + GAED Y TFN++MRRKPKENNFKA+LE+IR+LMN C+VPDWLH+I LGYG
Sbjct: 636 QDMTNTIQNGAEDVYETFNIIMRRKPKENNFKAVLETIRNLMNTDCVVPDWLHDIILGYG 695
Query: 700 NPSAAQWTNMPDFLEVVDFKDTFIDTAHLEECFSDYEVSFVHPDGTENLDPRPPFRIRLP 759
+PS+A ++ MP+ + +DF DTF+ HL+ F + V D + PPFRI P
Sbjct: 696 DPSSAHYSKMPNQIATLDFNDTFLSIEHLKASFPGHNVKVTVEDPALQI---PPFRITFP 752
Query: 760 RTLKGTSRALPGNKKLTSDSMQVVNMVDASDGKDQLIVEAYTPPDPGPYPQDQPRQNSVR 819
R+ G K+ +D V D + K LIVE + P+ GPYP +QP++N+++
Sbjct: 753 ------VRSGKGKKRKDAD----VEDEDTEEAKT-LIVEPHVIPNRGPYPYNQPKRNTIQ 801
Query: 820 FTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALND 879
FT TQ+ AI +G+QPGLTMVVGPPGTGKTD AVQI++ +YHN P QRTLI+THSNQALN
Sbjct: 802 FTHTQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQIISNIYHNFPEQRTLIVTHSNQALNQ 861
Query: 880 LFEKIMQRDVPARYLLRLGQGEQELATDLDFSRQGRVNAMLVRRLELLSEVERLARSLQL 939
LFEKIM D+ R+LLRLG GE+EL T+ DFSR GRVN +L RR+ELL EV+RL +SL +
Sbjct: 862 LFEKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQKSLGV 921
Query: 940 PEDVGYTCETAGYFWLLHVYSRWEQFLAACADNEGKP----TFVRDRFPFKEFFSNTPQP 995
P D YTCETAGYF+L V SRWE++++ N+G T V FPF E+F+N PQP
Sbjct: 922 PGDASYTCETAGYFFLYQVMSRWEEYISK-VKNKGSTLPDVTEVSTFFPFHEYFANAPQP 980
Query: 996 IFTGDSFEKDMRAAKGCFRHLQTLFQELEECRAFELLKSTADRANYLMTKQAKIVAMTCT 1055
IF G S+E+DM A+GCFRH++ +F +LEE RA ELL+S DR+ YL+ K+AKI+AMTCT
Sbjct: 981 IFKGRSYEEDMEIAEGCFRHIKKIFTQLEEFRASELLRSGLDRSKYLLVKEAKIIAMTCT 1040
Query: 1056 HAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPMLL----------------NDRRML 1099
HAALKR D ++LGFKYDN+LMEE+AQILEIETFIP+LL D L
Sbjct: 1041 HAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLKRWIMIGDHHQL 1100
Query: 1100 PPVVKNMAFQKYSHMDQSLFTRFVRLGIPYIELNAQGRARPSIAQLYNWRYRDLGDLPF- 1158
PPV+KNMAFQKYS+M+QSLFTRFVR+G+P ++L+AQGRAR S+ LYNWRY++LG+LP
Sbjct: 1101 PPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRARASLCNLYNWRYKNLGNLPHV 1160
Query: 1159 ------------------LVDVPDYNGRGESAPSPWFYQNEGEAEYVVSVYIYMRLLGYP 1200
L++V D+ G GES P+P+FYQN GEAEYVV++++YM LLGYP
Sbjct: 1161 QLLPEFSTANAGLLYDFQLINVEDFQGVGESEPNPYFYQNLGEAEYVVALFMYMCLLGYP 1220
Query: 1201 ANKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRTRF 1260
A+KISILTTYNGQK LIRD+INR+C P IG P+KVTTVD+FQGQQND+ILLSLVRTR
Sbjct: 1221 ADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQGQQNDYILLSLVRTRA 1280
Query: 1261 VGHLRDVRRLVVAMSRARLGLYVFCRRSLFEQCYELQPTFRLLLQRPDKLALTMNEKTSY 1320
VGHLRDVRRLVVAMSRARLGLY+F R SLF+ C+EL P F L RP L + E
Sbjct: 1281 VGHLRDVRRLVVAMSRARLGLYIFARVSLFQNCFELTPAFSQLTARPLHLHIIPTEPFPT 1340
Query: 1321 TDRHVE 1326
T ++ E
Sbjct: 1341 TRKNGE 1346
>sp|Q8CFQ3|AQR_MOUSE Intron-binding protein aquarius OS=Mus musculus GN=Aqr PE=2 SV=2
Length = 1481
Score = 1223 bits (3164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 652/1380 (47%), Positives = 878/1380 (63%), Gaps = 162/1380 (11%)
Query: 46 TLSEIQRDRLTKIASENW---LKTEKPFDAELVKEIYRTELTVKEGRKTVPLHRVMILEV 102
T+S+I + +T++A + W +K + PFD ++++EIY E+ + + ++M+LE
Sbjct: 14 TVSQINAEFVTQLACKYWAPHIKKKSPFDIKVIEEIYEKEIV----KSRFAIRKIMLLEF 69
Query: 103 SQYLENYLWPNF------------------------------------------------ 114
SQYLENYLW N+
Sbjct: 70 SQYLENYLWMNYSPEVSSKAYLMSICCMVNEKFRENVPAWETFKKKPDHFPFFFKCILKA 129
Query: 115 -----DAETASFEHVMSMILMVNE-KSLEDEIVSKTVLRLASLQSWHSLSYGRFQMELCL 168
D E + E + ++ + + SLE +++ V +L SL W L R ++EL
Sbjct: 130 ALAETDGEFSLHEQTLLLLFLDHCFNSLEVDLIRSQVQQLISLPMWMGLQPARLELELKK 189
Query: 169 NPDLIKKWKRMVKREFKEAMKRGEPFDP----SAMLEVKFLRNFIEEFLEVLENEVFVQR 224
P L K W + K + E DP A E +FL I++F+ VL++ +
Sbjct: 190 TPKLRKFWNLIKKND--------EKMDPEAREQAYQERRFLSRLIQKFISVLKSIPLSEP 241
Query: 225 HHVNNEDDHADANSFLQPNDACVLYCERFMEFLIDLLSQLPTRRYLRPLVADLAIVAKCH 284
++ V YCERF+E +IDL + LPTRR+ ++ D ++ C+
Sbjct: 242 VTMDK-----------------VHYCERFIELMIDLEALLPTRRWFNTILDDSHLLVHCY 284
Query: 285 LSTL-YRHEKGKLFAQLVDLLQFYEKFEINDHVGKQLTDDEVLQSHYDRFQSFQLLAFKK 343
LS+L +R E G LF+QL+D+L+FY FEIND G LT++E+ HYDR S Q AF
Sbjct: 285 LSSLVHREEDGHLFSQLLDMLKFYTGFEINDQTGNALTENEMTTIHYDRITSLQRAAFAH 344
Query: 344 IPKLQELALANIGSIHKRADLSKRLSVLS---LKELQDLVCCKLKLLSSKDPWLDSYDFL 400
P+L + AL+N+ + R L K LS L ++ +C L ++D D +FL
Sbjct: 345 FPELYDFALSNVAEVDARDSLVKFFGPLSSNTLHQVASYLCLLPTLPKNEDTTFDK-EFL 403
Query: 401 VEVIVSFFEKQQSQKEAINALPLYPNEQIMWDESLVPSINYSGEGCLALPKLNLQFLTLH 460
+E++VS E++ SQ + +N +PLYP E+I+WDE++VP+ YSGEGCLALPKLNLQFLTLH
Sbjct: 404 LELLVSRHERRISQIQQLNQMPLYPTEKIIWDENIVPTEYYSGEGCLALPKLNLQFLTLH 463
Query: 461 DYLLRNFNLFRLESTYEIREDIQEAVPHLLAYINNEGEAAFRGWSRMAVPIKEFKITEVK 520
DYLLRNFNLFRLESTYEIR+DI+++V + + + G F GW+RMA PI F + EV
Sbjct: 464 DYLLRNFNLFRLESTYEIRQDIEDSVSRMKPWQSEYGGVVFGGWARMAQPIVAFTVVEVA 523
Query: 521 QPNIGEVKPSSVTAAITFSISSYKAHVRSEWNALKEHDVLFLLSIRPSFEPLSAEEAAKA 580
+PNIGE P+ V A +T +++ + H++ EW L++HDV FL+++RP+ +P + +
Sbjct: 524 KPNIGENWPTRVRADVTINLN-VRDHIKDEWEGLRKHDVCFLITVRPT-KPYGTKFDRRR 581
Query: 581 SVPQKLGLQCVRGCEIIEIRDEDGTLMNDFTGRIKRDEWKPP-KGELRTVTVALDTAQYH 639
+++GL VRGCEI + D+ G ++ D E +P +GE RT V LD QY
Sbjct: 582 PFIEQVGLVYVRGCEIQGMLDDKGRVIED------GPEPRPNLRGESRTFRVFLDPNQYQ 635
Query: 640 MDVTDIAEKGAEDAYGTFNVLMRRKPKENNFKAILESIRDLMNEYCIVPDWLHNIFLGYG 699
D+T+ + GAED Y TFNV+MRRKPKENNFKA+LE+IR+LMN C+VPDWLH+I LGYG
Sbjct: 636 QDMTNTIQNGAEDVYDTFNVIMRRKPKENNFKAVLETIRNLMNTDCVVPDWLHDIILGYG 695
Query: 700 NPSAAQWTNMPDFLEVVDFKDTFIDTAHLEECFSDYEVSFVHPDGTENLDPRPPFRIRLP 759
+PS+A ++ MP+ + +DF DTF+ HL+ F + V D + PPFRI P
Sbjct: 696 DPSSAHYSKMPNQIATLDFNDTFLSIEHLKASFPGHNVKVTVSDPALQI---PPFRITFP 752
Query: 760 RTLKGTSRALPGNKKLTSDSMQVVNMVDASDGKDQLIVEAYTPPDPGPYPQDQPRQNSVR 819
R+ G K+ +D + D ++ LIVE + P+ GPYP +QP++N+++
Sbjct: 753 ------VRSGKGKKRKDADGEE-----DDTEEAKTLIVEPHVIPNRGPYPYNQPKRNTIQ 801
Query: 820 FTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALND 879
FT TQ+ AI +G+QPGLTMVVGPPGTGKTD AVQI++ +YHN P QRTLI+THSNQALN
Sbjct: 802 FTHTQIEAIRAGMQPGLTMVVGPPGTGKTDVAVQIISNIYHNFPEQRTLIVTHSNQALNQ 861
Query: 880 LFEKIMQRDVPARYLLRLGQGEQELATDLDFSRQGRVNAMLVRRLELLSEVERLARSLQL 939
LFEKIM D+ R+LLRLG GE+EL T+ DFSR GRVN +L RR+ELL EV+RL +SL +
Sbjct: 862 LFEKIMALDIDERHLLRLGHGEEELETEKDFSRYGRVNYVLARRIELLEEVKRLQKSLGV 921
Query: 940 PEDVGYTCETAGYFWLLHVYSRWEQFLAACADNEGKPTF--------VRDRFPFKEFFSN 991
P D YTCETAGYF+L V SRWE++++ N G V FPF E+F+N
Sbjct: 922 PGDASYTCETAGYFFLYQVMSRWEEYMSR-VKNSGTACPDAAPDAAQVATFFPFHEYFAN 980
Query: 992 TPQPIFTGDSFEKDMRAAKGCFRHLQTLFQELEECRAFELLKSTADRANYLMTKQAKIVA 1051
PQPIF G S+E+DM A+GCFRH++ +F +LEE RA ELL+S DR+ YL+ K+AKI+A
Sbjct: 981 APQPIFKGRSYEEDMEIAEGCFRHIKKIFTQLEEFRASELLRSGLDRSKYLLVKEAKIIA 1040
Query: 1052 MTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPMLL----------------ND 1095
MTCTHAALKR D ++LGFKYDN+LMEE+AQILEIETFIP+LL D
Sbjct: 1041 MTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLKRWIMIGD 1100
Query: 1096 RRMLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYIELNAQGRARPSIAQLYNWRYRDLGD 1155
LPPV+KNMAFQKYS+M+QSLFTRFVR+G+P ++L+AQGRAR S+ LYNWRY++LG+
Sbjct: 1101 HHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRARASLCNLYNWRYKNLGN 1160
Query: 1156 LPF-------------------LVDVPDYNGRGESAPSPWFYQNEGEAEYVVSVYIYMRL 1196
LP L++V D+ G GES P+P+FYQN GEAEYVV++++YM L
Sbjct: 1161 LPHVQLLPEFSTANAGLLYDFQLINVEDFQGVGESEPNPYFYQNLGEAEYVVALFMYMCL 1220
Query: 1197 LGYPANKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLV 1256
LGYPA+KISILTTYNGQK LIRD+INR+C P IG P+KVTTVD+FQGQQND+ILLSLV
Sbjct: 1221 LGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQGQQNDYILLSLV 1280
Query: 1257 RTRFVGHLRDVRRLVVAMSRARLGLYVFCRRSLFEQCYELQPTFRLLLQRPDKLALTMNE 1316
RTR VGHLRDVRRLVVAMSRARLGLY+F R SLF+ C+EL P F L RP L + E
Sbjct: 1281 RTRAVGHLRDVRRLVVAMSRARLGLYIFARVSLFQNCFELTPAFSQLTARPLHLHIIPTE 1340
>sp|O94508|CWF11_SCHPO Pre-mRNA-splicing factor cwf11 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf11 PE=1 SV=1
Length = 1284
Score = 256 bits (654), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 279/1115 (25%), Positives = 473/1115 (42%), Gaps = 158/1115 (14%)
Query: 260 LLSQLPTRRYLRPLVADLAIVAKCHLSTLYRHEKGKLFAQLVDLLQFYEKFEINDHVGKQ 319
LLS PTRR+ P++ D +S Y + +LF ++ D L + KF ++ G +
Sbjct: 232 LLSAFPTRRFAHPVIEDSCFYTALRMSLYY--DSNELFKKMTDDLNYVLKFPFDNTRGNE 289
Query: 320 LTDDEVLQSHYDRFQSFQLLAFKKIPK-LQELALANIGSIHKRADLSKRLSVLSLKELQD 378
++ +++ + QL F K L +L S+ +R L + S LS L+
Sbjct: 290 YEKEQKIRNDELVYYHLQLTLFSDFQKELGDLVFCTQTSLQQRQKLEEITSFLSFNSLKS 349
Query: 379 LVCCKLKLLSS---KDPWLDSYDFLVEVIVSFFEKQQSQKEAINALPLYPNEQIMWDESL 435
L C K L +S K ++FL V ++ +++ + + +DE
Sbjct: 350 L-CSKCYLRTSFPEKYAIKVDFEFLKNVFINTYDRTRLVND--------------YDEI- 393
Query: 436 VPSINYSGEGCLALPKLNLQFLTLHDY-LLRNFNLFRLESTYEIREDIQEAVPHLLAYIN 494
IN++ + L + Q +L +Y LL+N + L ++ +R+ + LL +
Sbjct: 394 ---INFTLKDVLGERSVMDQENSLTNYFLLQNTAIQYLSISFFMRQQSKAYKKLLLRSLY 450
Query: 495 NEGEAAFRGWSRMAV-------------PIKEFKITEVKQPNIGEVKPSSVTAAITFSIS 541
E + R+++ + FK+T V P IG+V P V + S
Sbjct: 451 AELLNFSEQYRRLSIKNATKNLTKDNFFSLNNFKVTSVAPPQIGQVLPQFVKCQMGLSRP 510
Query: 542 S-YKAHVRSEWNALKEHDVLFLLSIRPSFEPLSAEEAAKASVPQKLGLQCVRGCEIIEIR 600
+ + +R N++K L L+ I E + L + G I
Sbjct: 511 GPFHSALRDLKNSIKS-PFLCLIYISKDME---------YKLLHGNALDPLEGVTDFTI- 559
Query: 601 DEDGTLMNDFTGRIKRDEWKPPKGELRTVTVALDTAQYHMDVTDIAEKGAEDAYGTFNVL 660
T+ ND G + D + +++ V L YH + + E + FN
Sbjct: 560 ---ATICNDDVGMFQSD--MQSDSDNKSINVYLSPFYYH-SLAGLGEYRPKQL--KFNFA 611
Query: 661 MRRKPKENNFKAILESIRDLMNEYCIVPDWLHNIFLGYGNPSAAQWTNMPDFLEVVDFKD 720
+ P+ N + L + L+N P W ++FLG+G P ++ F +
Sbjct: 612 LVLSPEANKYWLDLNILVSLLNRAKEFPKWFEDLFLGFGTP------------DICAFPN 659
Query: 721 TFIDTAHLEECFSDYEVSFVHPDGTENLDPRPPFRIRLPRTLKGTSRALPGNKKLTSDSM 780
+++ + F + E L P +P L S + K ++
Sbjct: 660 AGLNSIYARNLF----------NTVEQLQSVLP-NCHVPSNLSTESLLI----KFYTNQN 704
Query: 781 QVVNMVDASDGKDQLIVEAYTPPDPGPYPQDQPRQNSVRFTPTQVGAIISGIQPGLTMVV 840
++ V ASD L P + Q+ +I+ G QPGLTMV
Sbjct: 705 KISADVTASDRHFLL-----------------PSNRLYTYNDKQLESILRGSQPGLTMVN 747
Query: 841 GPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ-RDVPARYLLRLG- 898
GP GK ++L VL P+ RT++++ SN ++N LF + + R +LL L
Sbjct: 748 GPTRCGKHVLVCKLLEVLQDTSPNDRTVVLSDSNFSMNTLFTLLEKARCFHQGHLLYLSD 807
Query: 899 QGEQELATDLDFSRQGRVNAMLVRRLELLSEVERLARSLQLPEDVGYTCETAGYFWLLHV 958
+G+ E R G +++ + + LL E+ RLA S+Q P + +TA YF ++
Sbjct: 808 EGKDE-----TLERYGTLSSWISKLPGLLREIGRLAASIQAPGSHDASPDTALYFRDAYI 862
Query: 959 YSRWEQFLAACADNEGKPTFVRDRFPFKEFFSN-TPQPIFTGDSFEKD--MRAAKGCFRH 1015
WE++L D + + +RFPF +F + + +PI +++ KD A +
Sbjct: 863 KRLWEKYLNTVDDKDSVDAY--NRFPFHSYFGDKSKRPI---ETYNKDNFFDYATKLYGE 917
Query: 1016 LQTLFQELEECRAFELLKSTADRANYLMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLL 1075
L+ +FQ+LEE R F LL+ D+ Y + +Q++I+ T T + + + GF ++NL+
Sbjct: 918 LEYMFQQLEEIRPFGLLRYYEDQELYALCQQSRIIGCTWTSLSTRLGTLKEKGFCFNNLI 977
Query: 1076 MEESAQILEIETFIPMLLN------DRRMLPPVVKNMAFQKYSHMDQ--------SLFTR 1121
+ S I E +L N DR +L + Q + +Q SLF R
Sbjct: 978 VMNSQNISESSITSILLSNCEPTGFDRLVL------LGNQYLTSGNQDINNTSNGSLFKR 1031
Query: 1122 FVRLGIPYIELNAQGRARPSIAQLYNWRY--------------RDLGDLPF-----LVDV 1162
L I+LN Q R SI+ L + Y D G+ F ++V
Sbjct: 1032 LRYLKSRIIDLNTQYNVRESISSLCSSIYPLDIKTVDSSPNKRLDYGNSGFAHEVQFINV 1091
Query: 1163 PDYNGRGESAPSPWFYQNEGEAEYVVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVIN 1222
+ G E+ P + QN GEAEY V+++ YMR+LGYP N+I I T Y Q L+ ++I+
Sbjct: 1092 GAFKGSQETEPVSGYKQNLGEAEYAVALFQYMRMLGYPTNEIVICTLYESQVSLLNEIIS 1151
Query: 1223 RQCVPYPFIGPPSKVTTVDKF-QGQQNDFILLSLVRTRFVGHLRDVRRLVVAMSRARLGL 1281
+C F G P+ V TV+K ++ +F++ + V ++ + + A S GL
Sbjct: 1152 VRCSHNSFFGQPAFVGTVEKLPSDKRVNFVIFTTVESKEASDHWNPKTFYKAFSACSYGL 1211
Query: 1282 YVFCRRSLFEQCYELQPTFRLLLQRPDKLALTMNE 1316
YV C R LF L+ + + + PDKL LT E
Sbjct: 1212 YVLCNRDLFRSTRGLEKLWNEIEKTPDKLLLTTGE 1246
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 120 bits (301), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 136/264 (51%), Gaps = 32/264 (12%)
Query: 1045 KQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPM--------LLNDR 1096
K A++V MT T AA R+ Q+ + +++EE+A++LE T + L+ D
Sbjct: 969 KDAEVVGMTTTGAAKYRQILQQVEPRI--VIVEEAAEVLEAHTIATLSKACQHLILIGDH 1026
Query: 1097 RMLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYIELNAQGRARPSIAQLYNWR-YRDLGD 1155
+ L P K +++ SLF R V++ IP++ LN Q R RP IA+L Y+DL +
Sbjct: 1027 QQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMRPEIARLLTPHIYQDLEN 1086
Query: 1156 LPFLVDVPDYNGRG------------ESAPSPWFYQNEGEAEYVVSVYIYMRLLGYPANK 1203
P ++ G + +QN+ EA +VV + Y+ Y ++
Sbjct: 1087 HPSVLKYEQIKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCQYLLCQEYLPSQ 1146
Query: 1204 ISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRTR---F 1260
I+ILTTY GQ +R ++ + F G KV VDK+QG++ND ILLSLVR+
Sbjct: 1147 ITILTTYTGQLFCLRKLMPVK----TFAG--IKVHVVDKYQGEENDIILLSLVRSNQEGK 1200
Query: 1261 VGHLRDVRRLVVAMSRARLGLYVF 1284
VG L+ R+ VA+SRA+ G+Y
Sbjct: 1201 VGFLQIPNRICVALSRAKKGMYCI 1224
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 813 PRQNSVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQR------ 866
P + +++ +Q+ A+ + L ++ GPPGTGKT ++I+ L N +
Sbjct: 584 PSKEALKLDDSQMEALQFALTKELAIIQGPPGTGKTYVGLKIVQALLTNKSVWQINTQTF 643
Query: 867 -TLIITHSNQALNDLFEKI 884
L++ ++N AL+ E I
Sbjct: 644 PILVVCYTNHALDQFLEGI 662
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 135/266 (50%), Gaps = 32/266 (12%)
Query: 1043 MTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPM--------LLN 1094
+ K A++V MT T AA R+ ++ + +++EE+A++LE T + L+
Sbjct: 974 ILKDAQVVGMTTTGAAKYRQILQKVEPRI--VIVEEAAEVLEAHTIATLSKACQHLILIG 1031
Query: 1095 DRRMLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYIELNAQGRARPSIAQLYNWR-YRDL 1153
D + L P K +++ SLF R V++ IP++ LN Q R P IA+L Y+DL
Sbjct: 1032 DHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLTPHIYQDL 1091
Query: 1154 GDLPFLVDVPDYNGRG------------ESAPSPWFYQNEGEAEYVVSVYIYMRLLGYPA 1201
+ P ++ G + +QN+ EA +VV + Y Y
Sbjct: 1092 ENHPSVLKYEKIKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCKYFLCQEYLP 1151
Query: 1202 NKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRTR-- 1259
++I+ILTTY GQ +R ++ + F G +V VDK+QG++ND ILLSLVR+
Sbjct: 1152 SQITILTTYTGQLFCLRKLMPAK----TFAG--VRVHVVDKYQGEENDIILLSLVRSNQE 1205
Query: 1260 -FVGHLRDVRRLVVAMSRARLGLYVF 1284
VG L+ R+ VA+SRA+ G+Y
Sbjct: 1206 GKVGFLQISNRICVALSRAKKGMYCI 1231
Score = 41.2 bits (95), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 804 DPGPYPQDQPRQNSVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCP 863
DPG +P + +++ +Q+ A+ + L ++ GPPGTGKT ++I+ L N
Sbjct: 586 DPGQWPSKE----ALKLDDSQMEALQFALTRELAIIQGPPGTGKTYVGLKIVQALLTNES 641
Query: 864 SQR-------TLIITHSNQALNDLFEKI 884
+ L++ ++N AL+ E I
Sbjct: 642 VWQISLQKFPILVVCYTNHALDQFLEGI 669
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 140/309 (45%), Gaps = 43/309 (13%)
Query: 1027 RAFELLKSTADRANYLMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIE 1086
+ ++ LK +R +T+ A ++ TC AA D F++ +L++ES Q E E
Sbjct: 613 KKYKNLKRATERE---ITQSADVICCTCVGAA----DLRLSNFRFRQVLIDESTQATEPE 665
Query: 1087 TFIPMLLN--------DRRMLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYIELNAQGRA 1138
IP++L D L PV+ + + + QSLF R V LGI I L Q R
Sbjct: 666 CLIPLVLGVKQVVLVGDHCQLGPVIMCKKAAR-AGLAQSLFERLVTLGIKPIRLQVQYRM 724
Query: 1139 RPSIAQLYNWRY-------------RDLGDLPFLVDVPDYN-------GRGESAPSPWFY 1178
P++++ + + R + F VP+ G+ E + S Y
Sbjct: 725 HPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWPVPNRPMFFYVQLGQEEISASGTSY 784
Query: 1179 QNEGEAEYVVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVT 1238
N EA V + G ++I ++T Y GQ+ I + + R + +V
Sbjct: 785 LNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVA 844
Query: 1239 TVDKFQGQQNDFILLSLVRT---RFVGHLRDVRRLVVAMSRARLGLYVFCRRSLFEQCYE 1295
+VD FQG++ D+I+LS VR+ + +G L D RRL VA++RAR G+ + + +
Sbjct: 845 SVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSK--- 901
Query: 1296 LQPTFRLLL 1304
QP + LL
Sbjct: 902 -QPLWNGLL 909
Score = 41.6 bits (96), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 813 PRQNSVRFTP----TQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTL 868
PR+ V P +QV A+ S +Q ++++ GPPGTGKT T+ I+ + Q L
Sbjct: 478 PRRFGVPGLPELNASQVNAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQ-VL 536
Query: 869 IITHSNQALNDLFEKI 884
+ SN A++ L EKI
Sbjct: 537 VCAPSNVAVDQLAEKI 552
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 /
FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 133/303 (43%), Gaps = 45/303 (14%)
Query: 1027 RAFELLKSTADRANYLMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIE 1086
+ F+ L A+R + + A +V TC A R + K+ N+L++ES Q E E
Sbjct: 578 KRFKQLTRQAERE---ILQNADVVCCTCVGAGDPRLSKM----KFRNVLIDESTQSAEPE 630
Query: 1087 TFIPMLLN--------DRRMLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYIELNAQGRA 1138
IP++L D + L PV+ N K + ++QSLF R V+L I L Q R
Sbjct: 631 CMIPLVLGCKQVVLVGDHKQLGPVIMNKKAAK-AGLNQSLFERLVKLQFTPIRLKVQYRM 689
Query: 1139 RPSIAQL-YNWRY------------RDLGDLPFLVDVPDYN-------GRGESAPSPWFY 1178
P +++ N Y R D+ F VP+ G E + S Y
Sbjct: 690 HPCLSEFPSNMFYEGSLQNGVTAAERLRKDVDFPWPVPETPMMFWSNLGNEEISASGTSY 749
Query: 1179 QNEGEAEYVVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVT 1238
N EA V + G I ++T Y GQ+ I + + +V
Sbjct: 750 LNRTEAANVEKIVTRFFKAGVKPADIGVITPYEGQRSYIVNTMQNTGTFKKESYREVEVA 809
Query: 1239 TVDKFQGQQNDFILLSLVRT---RFVGHLRDVRRLVVAMSRARLGLY------VFCRRSL 1289
+VD FQG++ DFI+LS VR+ + +G L D RRL VA++RA+ GL V C+ L
Sbjct: 810 SVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALTRAKYGLVIIGNPKVLCKHEL 869
Query: 1290 FEQ 1292
+
Sbjct: 870 WHH 872
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 823 TQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFE 882
+Q+ AI + L+++ GPPGTGKT T+ I+ L SQ L+ SN A++ L E
Sbjct: 459 SQIAAIKQVLSNPLSLIQGPPGTGKTVTSATIIYHLAKMSNSQ-VLVCAPSNVAVDQLCE 517
Query: 883 KI 884
+I
Sbjct: 518 RI 519
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1 SV=2
Length = 1124
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 132/289 (45%), Gaps = 41/289 (14%)
Query: 1027 RAFELLKSTADRANYLMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIE 1086
+ + LK TA+R LM A ++ TC A R +Q + ++L++ES Q E E
Sbjct: 599 KRYRALKRTAER-ELLMN--ADVICCTCVGAGDPRLAKMQ----FRSILIDESTQATEPE 651
Query: 1087 TFIPMLLNDRRM--------LPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYIELNAQGRA 1138
+P++L +++ L PVV K + + QSLF R V LGI I L Q R
Sbjct: 652 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAK-AGLSQSLFERLVVLGIRPIRLQVQYRM 710
Query: 1139 RPSIAQLYNWRYRDLGDLPFLVDVPD---------------------YNGRGESAPSPWF 1177
P+++ + + + G L V D G+ E A S
Sbjct: 711 HPALSAFPSNIFYE-GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTS 769
Query: 1178 YQNEGEAEYVVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKV 1237
Y N EA V + + G ++I I+T Y GQ+ + + + + ++
Sbjct: 770 YLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEI 829
Query: 1238 TTVDKFQGQQNDFILLSLVRT---RFVGHLRDVRRLVVAMSRARLGLYV 1283
+VD FQG++ DFI+LS VR + +G L D RRL VA++RAR G+ +
Sbjct: 830 ASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVII 878
Score = 41.2 bits (95), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 11/69 (15%)
Query: 823 TQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYH-----NCPSQRTLIITHSNQAL 877
+QV A+ + +Q L+++ GPPGTGKT T+ I +YH N P L+ SN A+
Sbjct: 480 SQVYAVKTVLQRPLSLIQGPPGTGKTVTSATI---VYHLARQGNGP---VLVCAPSNIAV 533
Query: 878 NDLFEKIMQ 886
+ L EKI Q
Sbjct: 534 DQLTEKIHQ 542
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2
Length = 1129
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 131/289 (45%), Gaps = 41/289 (14%)
Query: 1027 RAFELLKSTADRANYLMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIE 1086
+ + LK TA+R + A ++ TC A R +Q + ++L++ES Q E E
Sbjct: 604 KRYRALKRTAERE---LLMNADVICCTCVGAGDPRLAKMQ----FRSILIDESTQATEPE 656
Query: 1087 TFIPMLLNDRRM--------LPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYIELNAQGRA 1138
+P++L +++ L PVV K + + QSLF R V LGI I L Q R
Sbjct: 657 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAK-AGLSQSLFERLVVLGIRPIRLQVQYRM 715
Query: 1139 RPSIAQLYNWRYRDLGDLPFLVDVPD---------------------YNGRGESAPSPWF 1177
P+++ + + + G L V D G+ E A S
Sbjct: 716 HPALSAFPSNIFYE-GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTS 774
Query: 1178 YQNEGEAEYVVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKV 1237
Y N EA V + + G ++I I+T Y GQ+ + + + + ++
Sbjct: 775 YLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEI 834
Query: 1238 TTVDKFQGQQNDFILLSLVRT---RFVGHLRDVRRLVVAMSRARLGLYV 1283
+VD FQG++ DFI+LS VR + +G L D RRL VA++RAR G+ +
Sbjct: 835 ASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVII 883
Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 11/69 (15%)
Query: 823 TQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYH-----NCPSQRTLIITHSNQAL 877
+QV A+ + +Q L+++ GPPGTGKT T+ I +YH N P L+ SN A+
Sbjct: 485 SQVYAVKTVLQRPLSLIQGPPGTGKTVTSATI---VYHLARQGNGP---VLVCAPSNIAV 538
Query: 878 NDLFEKIMQ 886
+ L EKI Q
Sbjct: 539 DQLTEKIHQ 547
>sp|O74465|HRR1_SCHPO Helicase required for RNAi-mediated heterochromatin assembly 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrr1 PE=1 SV=2
Length = 999
Score = 90.5 bits (223), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 124/280 (44%), Gaps = 37/280 (13%)
Query: 1042 LMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILE---IETFIP-----MLL 1093
++ + A ++ MT T R ++ K +EE+A +LE I P +L+
Sbjct: 678 ILLRGANVIGMTTTGLNKYRDILERINPKI--CFIEEAADVLEGPIIPAVFPSLEQLVLI 735
Query: 1094 NDRRMLPPVVKNMAF-QKYSHMDQSLFTRFVRLGIPYIELNAQGRARPSIAQLYNWRYRD 1152
D + L P A Q ++ S+F R V + Y L Q R P I +L + Y D
Sbjct: 736 GDHKQLRPGCSTYALRQDPFNLSISMFERLVENDMEYTRLTMQRRMHPQIRRLVSSVYED 795
Query: 1153 LGDLPFLVDVPDYNGRGESA----PSPWFYQNEG--------EAEYVVSVYIYMRLLGYP 1200
L D P G GE N+G EA+ +V +Y+ G
Sbjct: 796 LSDYEITKYWPSIPGMGEIRRFFLTHSRIEDNDGFASKINLFEAQMLVQFAVYLINNGVE 855
Query: 1201 ANKISILTTYNGQKLLIR----DVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLV 1256
KI+ LT Y QK LI + +NR+ FI KV TVD +QG++ND +LLSLV
Sbjct: 856 PQKITCLTFYAAQKDLIERLLSESLNRE---KHFI----KVATVDGYQGEENDVVLLSLV 908
Query: 1257 RTR---FVGHLRDVRRLVVAMSRARLGLYVFCRRSLFEQC 1293
R VG L R+ V++SRAR GL++F L +
Sbjct: 909 RNNDRTEVGFLSSPHRVCVSLSRARRGLFIFGNAQLVAES 948
Score = 42.4 bits (98), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 15/107 (14%)
Query: 794 QLIVEAYTPPDPGPYPQDQPRQNSVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQ 853
Q IV A P PG Y D +Q+ A S + L+++ GPPGTGK+ ++
Sbjct: 356 QKIVNALEPFGPGEYILDS----------SQLKAYQSMLTKRLSIIQGPPGTGKSFVTLK 405
Query: 854 ILNVLYHNCPSQR--TLIITHSNQALNDLFEKIMQRDVPARYLLRLG 898
+ L N S L+ +N A++ + +++ + ++RLG
Sbjct: 406 AIETLLENTHSHVLPILVACQTNHAVDQILIRLLHQGAS---VMRLG 449
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 134/311 (43%), Gaps = 50/311 (16%)
Query: 1011 GCFRHLQTLFQEL--EECRAFELLKSTADRANYLMTKQAKIVAMTCTHAALKRKDFLQLG 1068
G R L+ F L E+ + + L+ + A + ++A ++ TC A R
Sbjct: 645 GKLRKLKEAFGSLSNEDEKRYIYLRRMMEMA---ILRKADVICATCVGAGDPRLS----Q 697
Query: 1069 FKYDNLLMEESAQILEIETFIPM--------LLNDRRMLPPVVKNMAFQKYSHMDQSLFT 1120
F++ ++L++ES Q E E IP+ L+ D R L PV+ + + QSLF
Sbjct: 698 FRFPHILIDESTQASEPECLIPLMMGAKQVILVGDHRQLGPVLLCKKVVD-AGLSQSLFE 756
Query: 1121 RFVRLGIPYIELNAQGRARPSIAQL-YNWRYRDLGDLPFLVDVPDYNGRGESAPSPW--- 1176
R + LG L Q R PS+ + N Y LV + R + PW
Sbjct: 757 RLISLGHHPERLTIQYRMHPSLTEFPSNTSYEGQ-----LVSELSHTDRDSQSKFPWPQP 811
Query: 1177 -----FYQNEGEAEYVVSVYIYMRL---------------LGYPANKISILTTYNGQKLL 1216
F+ G E S ++ LG +I I+T Y GQ+
Sbjct: 812 KDPMFFFNCTGSEEISSSGTSFINTTEASICEKIVTKFLELGSLPGQIGIITPYEGQRAY 871
Query: 1217 IRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRT---RFVGHLRDVRRLVVA 1273
I + + + +V +VD FQG++ D+I+LS VR+ + +G L+D RRL VA
Sbjct: 872 ITSHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQDPRRLNVA 931
Query: 1274 MSRARLGLYVF 1284
++RAR GL +
Sbjct: 932 LTRARFGLIIL 942
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 815 QNSVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQ-RTLIITHS 873
+N R +Q+ A+ + L+++ GPPGTGKT + I++ L + L+ T S
Sbjct: 532 KNLPRLNESQISAVNKVLTAPLSLIQGPPGTGKTVISSFIIHHLVKYVKGNDKVLVCTPS 591
Query: 874 NQALNDLFEKIMQ 886
N A++ L K+ +
Sbjct: 592 NVAIDQLTGKLHE 604
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 133/312 (42%), Gaps = 41/312 (13%)
Query: 1007 RAAKGCFRHLQTLFQELEECRAFELLK--STADRANYLMTKQAKIVAMTCTHAALKRKDF 1064
R AKG ++L L E+ E A + + + + +A +V TC A KR D
Sbjct: 505 RGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGDKRLDT 564
Query: 1065 LQLGFKYDNLLMEESAQILEIETFIPM--------LLNDRRMLPPVVKNMAFQKYSHMDQ 1116
K+ +L++ES Q E E IP+ L+ D + L PV+ + + Q
Sbjct: 565 -----KFRTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVILERKAAD-AGLKQ 618
Query: 1117 SLFTRFVRLGIPYIELNAQGRARPSIAQLYNWRYRDLGDLPFLVDVPDYNGRGESAPSP- 1175
SLF R + LG I L Q R P +++ + + + G L V + P P
Sbjct: 619 SLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYE-GSLQNGVTIEQRTVPNSKFPWPI 677
Query: 1176 -----WFYQNEGEAEYVVSVYIYMRLL---------------GYPANKISILTTYNGQKL 1215
F+ N G E + ++ + G +I ++T Y GQ+
Sbjct: 678 RGIPMMFWANYGREEISANGTSFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRA 737
Query: 1216 LIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRT---RFVGHLRDVRRLVV 1272
I + + +V +VD FQG++ D+I+LS VR + +G LRD RRL V
Sbjct: 738 YILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNV 797
Query: 1273 AMSRARLGLYVF 1284
++RA+ GL +
Sbjct: 798 GLTRAKYGLVIL 809
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 807 PYPQDQPRQNSVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYH--NCPS 864
P P++ N + +Q A+ +Q L+++ GPPGTGKT T+ I +YH
Sbjct: 396 PLPKEFSIPNFAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATI---VYHLSKIHK 452
Query: 865 QRTLIITHSNQALNDLFEKI 884
R L+ SN A++ L K+
Sbjct: 453 DRILVCAPSNVAVDHLAAKL 472
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 125/275 (45%), Gaps = 40/275 (14%)
Query: 1043 MTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPM--------LLN 1094
+ + A ++ TC A +R +K+ ++L++E+ Q E E IP+ L+
Sbjct: 534 LLRAAHVICCTCVGAGDRRIS----KYKFRSVLIDEATQASEPECMIPLVLGAKQVVLVG 589
Query: 1095 DRRMLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYIELNAQGRARPSIAQLYNWRYRDLG 1154
D + L PVV N S + QSLF R + LG L Q R P +++ + + + G
Sbjct: 590 DHQQLGPVVMNKKVALAS-LSQSLFERLIILGNSPFRLVVQYRMHPCLSEFPSNTFYE-G 647
Query: 1155 DLPFLVDVPDYNGRGESAP-----SP-WFYQNEGEAEYVVS----------------VYI 1192
L V + R P SP FY N G+ E S V
Sbjct: 648 TLQNGVTTSERIARHVDFPWIQPDSPLMFYANFGQEELSASGTSFLNRTEASTCEKIVTT 707
Query: 1193 YMRLLGYPANKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFIL 1252
++R P +I I+T Y+GQ+ I + + +V +VD FQG++ DFI+
Sbjct: 708 FLRSNVLP-EQIGIVTPYDGQRSYIVQYMQNNGSMQKDLYKAVEVASVDAFQGREKDFII 766
Query: 1253 LSLVRT---RFVGHLRDVRRLVVAMSRARLGLYVF 1284
LS VR+ + +G + D RRL VA++RA+ G+ V
Sbjct: 767 LSCVRSSEHQGIGFVNDPRRLNVALTRAKYGVIVL 801
Score = 40.8 bits (94), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 773 KKLTSDSMQVVNMVDASDGK-------DQLIVEAYTPPDPGP-YPQDQPRQNSVRFTPTQ 824
K + D MQ + A+DG +L+ P P P D N + +Q
Sbjct: 338 KSTSFDRMQTALRLFATDGSRLSSFLYHKLLGHDIPPSFLKPKLPSDLSVPNLPKLNASQ 397
Query: 825 VGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQR--------TLIITHSNQA 876
A+ + + L+++ GPPGTGKT T+ +V+YH Q L+ SN A
Sbjct: 398 SEAVRAVLSKPLSLIQGPPGTGKTVTSA---SVVYHLATMQSRKRKSHSPVLVCAPSNVA 454
Query: 877 LNDLFEKIMQRDVPARYLLRLGQGEQELATDLDF------SRQGRVNAMLVRRLELLSEV 930
++ L EKI + + R + + +++ + + F + + N L R L+L SE
Sbjct: 455 VDQLAEKIHRTGL--RVVRVAAKSREDIESSVSFLSLHEQIKNYKFNPELQRLLKLRSEN 512
Query: 931 ERLA 934
L+
Sbjct: 513 NELS 516
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 126/270 (46%), Gaps = 53/270 (19%)
Query: 1066 QLGFKYDNLLMEESAQILEIETFIPM--------LLNDRRMLPPVVKNMAFQKYSHMDQS 1117
Q G + ++++E+ Q EIET P+ L+ D + LPP V +M Q+Y + DQS
Sbjct: 2170 QGGVPFSCVIVDEAGQSCEIETLTPLIHRCNKLILVGDPKQLPPTVISMKAQEYGY-DQS 2228
Query: 1118 LFTRFVRL-----------GIPYIELNAQGRARPSIAQL-YNWRY-------------RD 1152
+ RF RL +P ++L Q R P I N+ Y R
Sbjct: 2229 MMARFCRLLEENVEHNMISRLPILQLTVQYRMHPDICLFPSNYVYNRNLKTNRQTEAIRC 2288
Query: 1153 LGDLPF----LVDVPDYNGRGESAPSPWFYQNEGEAEYVVSVY--IYMRLLGYPANKISI 1206
D PF + DV D + R ++ Y N E + V+ + I + I I
Sbjct: 2289 SSDWPFQPYLVFDVGDGSERRDNDS----YINVQEIKLVMEIIKLIKDKRKDVSFRNIGI 2344
Query: 1207 LTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRTR----FVG 1262
+T Y QK +I+ ++++ + GP ++V TVD FQG+Q D ++++ VR +G
Sbjct: 2345 ITHYKAQKTMIQKDLDKE---FDRKGP-AEVDTVDAFQGRQKDCVIVTCVRANSIQGSIG 2400
Query: 1263 HLRDVRRLVVAMSRARLGLYVFCR-RSLFE 1291
L ++RL V ++RA+ L++ R+L E
Sbjct: 2401 FLASLQRLNVTITRAKYSLFILGHLRTLME 2430
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 130/293 (44%), Gaps = 52/293 (17%)
Query: 1034 STADRANYLMTKQAK---------IVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILE 1084
S+AD Y K+A ++ TC A R + K+ ++L++ES Q E
Sbjct: 569 SSADEKRYRNLKRAAENQLLEAADVICCTCVGAGDGRLSRV----KFTSILIDESMQSTE 624
Query: 1085 IETFIPMLLNDRRM--------LPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYIELNAQG 1136
E +P++L +++ L PVV + + + QSLF R V LGI L Q
Sbjct: 625 PECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAR-AGLSQSLFERLVVLGIRPFRLEVQY 683
Query: 1137 RARPSIAQL-YNWRY------------RDLG-DLP---------FLVDVPDYNGRGESAP 1173
R P ++Q N+ Y R L D P FLV G+ E A
Sbjct: 684 RMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQPERPMFFLVT----QGQEEIAG 739
Query: 1174 SPWFYQNEGEAEYVVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRQCVPYPFIGP 1233
S + N EA V + G +I I+T Y GQ+ + + Q + +
Sbjct: 740 SGTSFLNRTEAANVEKITTRFLKAGIKPEQIGIITPYEGQRAYLVQYMQYQGSLHSRLYQ 799
Query: 1234 PSKVTTVDKFQGQQNDFILLSLVRT---RFVGHLRDVRRLVVAMSRARLGLYV 1283
++ +VD FQG++ D I++S VR+ + +G L D RRL VA++RA+ G+ +
Sbjct: 800 EIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLNVALTRAKFGIII 852
Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 823 TQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFE 882
+QV A+ +Q L+++ GPPGTGKT T+ I+ L L+ SN A++ L E
Sbjct: 455 SQVYAVKHALQRPLSLIQGPPGTGKTVTSATIVYQLV-KLHGGTVLVCAPSNTAVDQLTE 513
Query: 883 KIMQRDVPARYLLRLGQGEQELATDLDFSRQGRVNAMLVRRLELLSEVERLARSLQLPED 942
KI + ++ ++R+ +E A D S N +R +E SE+++L QL ++
Sbjct: 514 KIHRTNLK---VVRVCAKSRE-AIDSPVSFLALHNQ--IRNMETNSELKKLQ---QLKDE 564
Query: 943 VG 944
G
Sbjct: 565 TG 566
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 124/267 (46%), Gaps = 27/267 (10%)
Query: 1039 ANYLMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPM------- 1091
N + KQ ++V +TC + L K+ ++++E +QI E + +P+
Sbjct: 597 TNRTLLKQVRVVGVTCAACPFPCMNDL----KFPVVVLDECSQITEPASLLPIARFECEK 652
Query: 1092 --LLNDRRMLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYIELNAQGRARPSIAQLYNWR 1149
L+ D + LPP ++ + ++Q+LF R +G I L Q R P+I+ + N
Sbjct: 653 LILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLCLMGHKPILLRTQYRCHPAISAIANDL 712
Query: 1150 Y---------RDLGDLPFLVDVPD---YNGRG-ESAPSPWFYQNEGEAEYVVSVYIYMRL 1196
+ ++ P L +P YN +G E + N EA + + + +
Sbjct: 713 FYKGALMNGVTEIERSPLLEWLPTLCFYNVKGLEQIERDNSFHNVAEATFTLKLIQSLIA 772
Query: 1197 LGYPANKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLV 1256
G + I ++T Y Q + +++ +P I +V+TVD FQG + + I+LS V
Sbjct: 773 SGIAGSMIGVITLYKSQMYKLCHLLSAVDFHHPDI-KTVQVSTVDAFQGAEKEIIILSCV 831
Query: 1257 RTRFVGHLRDVRRLVVAMSRARLGLYV 1283
RTR VG + +R+ VA++R + L +
Sbjct: 832 RTRQVGFIDSEKRMNVALTRGKRHLLI 858
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 139/311 (44%), Gaps = 54/311 (17%)
Query: 1022 ELEECRAFELLKSTADRANYLMTKQAKIVAMT---CTHAALKRKDFL-QLGFKYDNLLME 1077
E+ E + DR N QA I+A++ C+ + D L +G K+D ++++
Sbjct: 1535 EMREKNSVNYRNRDLDRRN----AQAHILAVSDIICSTLSGSAHDVLATMGIKFDTVIID 1590
Query: 1078 ESAQILEIETFIPM--------LLNDRRMLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPY 1129
E+ Q E+ + IP+ ++ D LPP V + A + + +QSLF R + PY
Sbjct: 1591 EACQCTELSSIIPLRYGGKRCIMVGDPNQLPPTVLSGAASNFKY-NQSLFVRMEKNSSPY 1649
Query: 1130 IELNAQGRARPSI-----AQLYNWRYRDLGDLPFLVDVPDY--------------NGRGE 1170
+ L+ Q R PSI ++ Y R +D + L P + +GR E
Sbjct: 1650 L-LDVQYRMHPSISKFPSSEFYQGRLKDGPGMDILNKRPWHQLEPLAPYKFFDIISGRQE 1708
Query: 1171 SAPSPWFYQNEGEAEYVVSV--YIYMRLLGYP--ANKISILTTYNGQKLLIRDVINRQCV 1226
Y N E + + Y++ + KI I++ Y Q +R R
Sbjct: 1709 QNAKTMSYTNMEEIRVAIELVDYLFRKFDNKIDFTGKIGIISPYREQMQKMRKEFARY-- 1766
Query: 1227 PYPFIGPPSK---VTTVDKFQGQQNDFILLSLVRT----RFVGHLRDVRRLVVAMSRARL 1279
F G +K T+D FQGQ+ + IL+S VR VG L+D RR+ VA++RA+
Sbjct: 1767 ---FGGMINKSIDFNTIDGFQGQEKEIILISCVRADDTKSSVGFLKDFRRMNVALTRAKT 1823
Query: 1280 GLYVFC-RRSL 1289
++V +RSL
Sbjct: 1824 SIWVLGHQRSL 1834
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 794 QLIVEAYTPPDPGPYPQDQPRQNSVRFTPTQVGAIISGI-QPGLTMVVGPPGTGKTDTAV 852
Q++ +PP + + + S + +Q AI++ + + G +++ GPPGTGKT T +
Sbjct: 1309 QILQAKPSPPVNVDAAEIETVKKSYKLNTSQAEAIVNSVSKEGFSLIQGPPGTGKTKTIL 1368
Query: 853 QIL 855
I+
Sbjct: 1369 GII 1371
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 137/519 (26%), Positives = 214/519 (41%), Gaps = 98/519 (18%)
Query: 824 QVGAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVL------YH-NCPSQRT-------- 867
Q AI+ + G T++ GPPGTGKT T + I++ L YH P+Q++
Sbjct: 1134 QAKAIMCALDNNGFTLIQGPPGTGKTKTIIGIISALLVDLSRYHITRPNQQSKSTESKQQ 1193
Query: 868 -LIITHSNQALNDLFEKIMQRDVPARYLLRLGQGEQELATDLDFSRQGRVNAMLVRRLEL 926
L+ SN A++++ ++ R L L GE+ + + +N VR L L
Sbjct: 1194 ILLCAPSNAAVDEVLLRL------KRGFL-LENGEKYIPRVVRIGNPETINVS-VRDLSL 1245
Query: 927 LSEVER-LARSLQLPEDVGYTCETAGYFWLLHVYSRWEQFLAACADN----EGKPTFVRD 981
+ E+ L Q D+G L +RW C E + RD
Sbjct: 1246 EYQTEKQLLEVNQGAIDLGS----------LQELTRWRDTFYDCIQKIEELEKQIDVARD 1295
Query: 982 RFPFKEFFSNTPQPIFTGDSFEKDMRAAKGCFRHLQTLFQELEECRAFELLKSTADRANY 1041
+ Q EK++ K LQ+ Q + + +LL+ A +A
Sbjct: 1296 VAEDTKSLGKELQNKIN----EKNLAEQK--VEELQS--QSFTKNKEVDLLRKKAQKA-- 1345
Query: 1042 LMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPM--------LL 1093
+ KQA +V T + + L F ++++E+AQ +E++T IP+ L+
Sbjct: 1346 -ILKQADVVCATLSGSGHDLVAHSSLNF--STVIIDEAAQAVELDTIIPLRYGAKKCILV 1402
Query: 1094 NDRRMLPPVV--KNMAFQKYSHMDQSLFTRFVR-LGIPYIELNAQGRARPSIA-----QL 1145
D LPP V K A YS QSLF R + L+ Q R P I+ +
Sbjct: 1403 GDPNQLPPTVLSKKAASLNYS---QSLFVRIQKNFSNQMCLLSIQYRMHPDISHFPSKKF 1459
Query: 1146 YNWRYRDLGDL-----------PFLVDVPDYNGRG-ESAPSPWFYQNEGEAEYVVSVYIY 1193
Y+ R D ++ P ++ RG E + N E EY+V++
Sbjct: 1460 YDSRLEDGDNMAEKTQQVWHVNPKFTQYRLFDVRGKERTSNTMSTYNLEEVEYLVNMVDE 1519
Query: 1194 MRLLGYP----ANKISILTTYNGQKLLIRDVINRQCVPY--PFIGPPSKVTTVDKFQGQQ 1247
+ L +P +I ++T Y Q +R V Y F+ + TVD FQGQ+
Sbjct: 1520 L-LNKFPDVNFTGRIGVITPYRSQLHELRRAFK---VKYGKSFMSTID-IQTVDGFQGQE 1574
Query: 1248 NDFILLSLVRT---RFVGHLRDVRRLVVAMSRARLGLYV 1283
D I S V++ +G LRD RRL VA++RAR L +
Sbjct: 1575 KDIIFFSCVKSYSKHGIGFLRDFRRLNVALTRARSSLLI 1613
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 128/277 (46%), Gaps = 55/277 (19%)
Query: 1066 QLGFKYDNLLMEESAQILEIETFIPM--------LLNDRRMLPPVVKNMAFQKYSHMDQS 1117
Q G + ++++E+ Q E+ET P+ L+ D + LPP V +M Q+Y + DQS
Sbjct: 2146 QGGVPFSCVIVDEAGQSCEVETLSPLIHRCNKLILVGDPKQLPPTVISMKAQEYGY-DQS 2204
Query: 1118 LFTRFVRL-----------GIPYIELNAQGRARPSIAQL-YNWRY-------------RD 1152
+ RF +L +P ++L Q R P I N+ Y R
Sbjct: 2205 MMARFCKLLEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVYNKNLKTNRLTESIRC 2264
Query: 1153 LGDLPF----LVDVPDYNGRGESAPSPWFYQNEGEAEYVVSVY--IYMRLLGYPANKISI 1206
+ PF + DV D + R ++ Y N E + V+ + I + I I
Sbjct: 2265 SSEWPFQPYLVFDVGDGSERRDNDS----YINVQEIKLVMEIIKLIKEKRKDISFRNIGI 2320
Query: 1207 LTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRTRFV----G 1262
+T Y QK +I+ + ++ + GP ++V TVD FQG+Q D I+++ VR V G
Sbjct: 2321 ITHYKAQKTMIQKDLEKE---FDKKGP-AEVDTVDAFQGRQKDCIIVTCVRASAVQGSIG 2376
Query: 1263 HLRDVRRLVVAMSRARLGLYVFCR-RSLFE--QCYEL 1296
L ++RL V ++RA+ L++ R+L E YEL
Sbjct: 2377 FLASLQRLNVTITRAKYSLFILGHLRTLMENQHWYEL 2413
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1 SV=1
Length = 683
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 124/278 (44%), Gaps = 65/278 (23%)
Query: 1071 YDNLLMEESAQILEIETFIPM-----------LLNDRRMLPPVVKNMAFQKYSH-MDQSL 1118
+D L+++E +Q +E + +IP+ L D + LPP +K + H ++ +L
Sbjct: 389 FDTLIIDEVSQAMEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTIKTEDDKNVIHNLETTL 448
Query: 1119 FTRFVRLGIPYIE----LNAQGRARPSIAQ-----LYNWRY--------RDLGDLPFLVD 1161
F R +++ P + LN Q R I + +YN + R L DLP +
Sbjct: 449 FDRIIKI-FPKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKLLADATVANRLLIDLPTVDA 507
Query: 1162 VPDYNGRGESAPSPWF------YQ-------------NEGEAEYVVSVYIYMRLLGYPAN 1202
P + P W+ +Q NEGE V +R P N
Sbjct: 508 TPSEDDDDTKIPLIWYDTQGDEFQETADEATILGSKYNEGEIAIVKEHIENLRSFNVPEN 567
Query: 1203 KISILTTYNGQ----KLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRT 1258
I +++ YN Q K LI D + + +++TVD FQG++ D I+LSLVR+
Sbjct: 568 SIGVISPYNAQVSHLKKLIHDELKLTDI---------EISTVDGFQGREKDVIILSLVRS 618
Query: 1259 --RF-VGHLRDVRRLVVAMSRARLGLYVFCRRSLFEQC 1293
+F VG L++ RRL VAM+R R L V + ++C
Sbjct: 619 NEKFEVGFLKEERRLNVAMTRPRRQLVVVGNIEVLQRC 656
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 823 TQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFE 882
+Q AI I LT++ GPPGTGKT T ++++ L P +R LI SN +++ + E
Sbjct: 211 SQKTAINFAINNDLTIIHGPPGTGKTFTLIELIQQLLIKNPEERILICGPSNISVDTILE 270
Query: 883 KIMQRDVPARYLLRLGQ 899
++ VP LLR+G
Sbjct: 271 RLTPL-VPNNLLLRIGH 286
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 143/341 (41%), Gaps = 61/341 (17%)
Query: 1016 LQTLFQELEECRAFELLKSTADRANYLMTKQAK---------IVAMTCTHAALKRKDFLQ 1066
LQ L Q +E E D Y+ K+ K ++ TC+ AA R +
Sbjct: 548 LQKLIQLKDEAGELEF----KDDLRYMQLKRVKEHELLAAADVICCTCSSAADARLSKI- 602
Query: 1067 LGFKYDNLLMEESAQILEIETFIPM--------LLNDRRMLPPVV--KNMAFQKYSHMDQ 1116
+ +L++ES Q E E + + L+ D L PVV K A + + Q
Sbjct: 603 ---RTRTVLIDESTQATEPEILVSIMRGVRQLVLVGDHCQLGPVVICKKAAI---AGLSQ 656
Query: 1117 SLFTRFVRLGIPYIELNAQGRARPSIAQLYNWRYRDLGDLPFLVDVPD------------ 1164
SLF R V LGI L Q R P +++ + + D G L V D
Sbjct: 657 SLFERLVLLGIRPFRLQVQYRMHPVLSEFPSNVFYD-GSLQNGVTENDRHMTGVDWHWPK 715
Query: 1165 ---------YNGRGESAPSPWFYQNEGEAEYVVSVYIYMRLLGYPANKISILTTYNGQKL 1215
+G E + S + N EA V + + G ++I ++T+Y GQ+
Sbjct: 716 PNKPAFFWHCSGSEELSASGTSFLNRTEAANVEKLVSKLIKAGVQPHQIGVITSYEGQRS 775
Query: 1216 LIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRTR---FVGHLRDVRRLVV 1272
I + ++ Q + ++ +VD FQG++ D+I+++ VR+ +G L D RRL V
Sbjct: 776 FIVNYMHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNV 835
Query: 1273 AMSRARLGLY------VFCRRSLFEQCYELQPTFRLLLQRP 1307
A++RA+ GL V R L+ + + +L + P
Sbjct: 836 AITRAKYGLVLVGNAKVLARHDLWHELINHYKSKEMLYEGP 876
Score = 39.3 bits (90), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 6/139 (4%)
Query: 811 DQPRQNSVRFTP----TQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQR 866
D PR+ SV P +Q+ A+ + L+++ GPPGTGKT + I+ L
Sbjct: 433 DLPRRLSVAGLPELNSSQMQAVKQVLTRPLSLIQGPPGTGKTVVSATIVYHLVQKTEGN- 491
Query: 867 TLIITHSNQALNDLFEKIMQRDVPARYLLRLGQGEQELATDLDFSRQGRVNAMLVRRLEL 926
L+ + SN A++ L EKI + + L + E + Q ++ M L+
Sbjct: 492 VLVCSPSNIAVDHLAEKIHKTGLKVVRLCARSREHSETTVPY-LTLQHQLKVMGGAELQK 550
Query: 927 LSEVERLARSLQLPEDVGY 945
L +++ A L+ +D+ Y
Sbjct: 551 LIQLKDEAGELEFKDDLRY 569
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 133/293 (45%), Gaps = 51/293 (17%)
Query: 1027 RAFELLKSTADRANYLMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIE 1086
+ + LK TA+R + A ++ TC A R +Q + ++L++ES Q E +
Sbjct: 575 KRYRALKRTAERE---LLMNADVIWCTCVRAGDPRLAKMQ----FRSILIDESTQATEPK 627
Query: 1087 TFIPMLLNDRRM-LPPVVKNMAF-----QKYSHMDQSLFTRFVRLGIPYIELNAQGRARP 1140
P+ L +++ L + + + + + QSLF R V LGI I L Q R P
Sbjct: 628 CIGPVELGAKQLILGEITASWSCVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHP 687
Query: 1141 SIAQLYNWRYRDLGDLPFLVDVPDYNGRG--ESAPSP----WFYQNEGEAEYVVSVYIYM 1194
+++ + + + G L V D +G P P +FY +G+ E S Y+
Sbjct: 688 ALSAFPSNIFYE-GSLQNGVTAGDRIKKGFDFQWPQPEKPMFFYVTQGQEEIASSGTSYL 746
Query: 1195 -------------RLL--GYPANKISILTTYNGQKLLIRDVINRQCVPYPFIGP------ 1233
RLL G ++I I+T Y GQ+ + + F G
Sbjct: 747 NRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYMQ-------FSGSLHTKLY 799
Query: 1234 PSKVTTVDKFQGQQNDFILLSLVRT---RFVGHLRDVRRLVVAMSRARLGLYV 1283
++ +VD FQG++ DFI+LS VR + +G L D RRL VA++RA+ G+ +
Sbjct: 800 QVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYGVII 852
Score = 39.7 bits (91), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 11/67 (16%)
Query: 823 TQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYH-----NCPSQRTLIITHSNQAL 877
+QV A+ + +Q L+++ GPPGTGKT T+ I +YH N P L+ SN A+
Sbjct: 456 SQVYAVKTVLQRPLSLIQGPPGTGKTVTSATI---VYHLSRQGNGP---VLVCAPSNIAV 509
Query: 878 NDLFEKI 884
+ L EKI
Sbjct: 510 DQLTEKI 516
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 127/276 (46%), Gaps = 43/276 (15%)
Query: 1043 MTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPM--------LLN 1094
+ ++A IV T + + + L G + ++++E+AQ +E+ + IP+ ++
Sbjct: 1484 LLQEADIVCATLSASG--HELLLNAGLTFRTVIIDEAAQAVELSSIIPLKYGCESCVMVG 1541
Query: 1095 DRRMLPPVVKNMAFQKYSHMDQSLFTR-FVRLGIPYIELNAQGRARPSIAQL-----YNW 1148
D LPP V + K+ + QSL+ R F + L+ Q R P I++ YN
Sbjct: 1542 DPNQLPPTVLSKTSAKFGY-SQSLYVRMFKQHNESACLLSIQYRMNPEISRFPSKFFYNS 1600
Query: 1149 RYRDLGDLPFLVDVP-------------DYNGRGESAPSPWFYQNEGEAEYVVSVYIYMR 1195
+ D ++ + P + +G + S Y N EA +++ +Y R
Sbjct: 1601 KLLDGPNMSAVTSRPWHEDPQLGIYRFFNVHGTEAFSNSKSLY-NVEEASFIL--LLYER 1657
Query: 1196 LLGYPAN-----KISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDF 1250
L+ N KI ++T Y Q +R R+ F + TVD FQGQ+ D
Sbjct: 1658 LIQCYLNIDFEGKIGVVTPYRSQVQQLRSQFQRKYGSIIF--KHLDIHTVDGFQGQEKDI 1715
Query: 1251 ILLSLVRTRF---VGHLRDVRRLVVAMSRARLGLYV 1283
I+ S VR+ +G L+D+RRL VA++RA+ LY+
Sbjct: 1716 IIFSCVRSSMSGGIGFLQDLRRLNVALTRAKSSLYI 1751
Score = 40.4 bits (93), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 32/111 (28%)
Query: 789 SDGKDQLIVEAYTPPDPGPYPQDQPRQNSVRFTPTQVGAIISGIQPGLTMVVGPPGTGKT 848
+D K Q I+++Y +P Y S + G T++ GPPGTGKT
Sbjct: 1258 TDDKKQKIMKSYGVNEPQAY-----------------AIYASSVNDGFTLIQGPPGTGKT 1300
Query: 849 DTAVQILNV--------LYHNCPSQ-------RTLIITHSNQALNDLFEKI 884
T + ++ L N P Q + LI SN A++++ +I
Sbjct: 1301 KTILGMIGAVLTSSSQGLQFNVPGQTRKTSKNKILICAPSNAAIDEILLRI 1351
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 113/503 (22%), Positives = 207/503 (41%), Gaps = 112/503 (22%)
Query: 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYLL 895
L ++ GPPGTGKT T +++ V + L SN A +++ E ++++ P ++
Sbjct: 202 LYLIHGPPGTGKTRTITEVI-VQEVKFNKHKVLATADSNIAADNILEYLIKK-YPDLKVV 259
Query: 896 RLGQGEQELATDLDFSRQGRVNAMLVRRL--ELLSEVERLARSLQLPEDVGYTCETAGYF 953
R+G R++ L++ L+ E+ L L E + E F
Sbjct: 260 RVGH-------------PTRISKDLIQHSLPYLIENHEKYQEILALREKIKEIKEQRDKF 306
Query: 954 WLLHVYSRWEQFLAACADNEGKPTFVRDRFPFKEFFSNTPQPIFTGDSFEKDMRAAKGCF 1013
L RW + +D + R K+ + P+ EK + A+
Sbjct: 307 --LKPSPRWRR---GMSDEQILKVAKR-----KKSYRGIPK--------EKIVSMAEWII 348
Query: 1014 RH--LQTLFQELEECRAFELLKSTADRANYLMTKQAKIVAMTCTHAALKRKDFLQLGFKY 1071
R+ ++ + L+E T N ++ + IVA + + L+ G+++
Sbjct: 349 RNKKIKRIINNLDEI--------TEKIMNEILAEADVIVATNSMAGS----EILK-GWEF 395
Query: 1072 DNLLMEESAQILEIETFIPM-------LLNDRRMLPPVVKNMAFQKYSHMDQSLFTRFVR 1124
D ++++E +Q +E IP+ + D + LPP V + + ++LF R ++
Sbjct: 396 DVIVIDEGSQAMEPSCLIPIVKGRKLIMAGDHKQLPPTV----LSENEELKKTLFERLIK 451
Query: 1125 LGIPYIE----LNAQGRARPSIAQLYNWRY-----------------------------R 1151
Y E L Q R I + N + R
Sbjct: 452 ---KYPEFSSILEIQYRMNEKIMEFPNKMFYNNKLKADESVKNITLLDLVKEEEIDEVDR 508
Query: 1152 DL-GDLPF-LVDVPDYNGRGESAPSPWFYQNEGEAEYVVSVYIYMRLLGYPANKISILTT 1209
D+ ++P ++V + + +PS Y N EAE V+ + + P N ++T
Sbjct: 509 DIINEIPVQFINVEGIERKDKESPS---YYNIEEAEKVLEIVKKLVKYKIPTN---VITP 562
Query: 1210 YNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRTRFVGHLRDVRR 1269
Y+ Q +R + + +V TVD FQG++N+ I++S VRT+ G L+D+RR
Sbjct: 563 YDAQVRYLRRLFEEHNIDI-------EVNTVDGFQGRENEAIVISFVRTKNFGFLKDLRR 615
Query: 1270 LVVAMSRARLGLYVFCRRSLFEQ 1292
L VA++RA+ L + +L +Q
Sbjct: 616 LNVAITRAKRKLILIGNENLLKQ 638
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 136/295 (46%), Gaps = 63/295 (21%)
Query: 1033 KSTADRANY--LMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIP 1090
+ST D ++ L+ +A IVA T + + + GF D ++++E+AQ +E T IP
Sbjct: 547 RSTQDTSSIRTLVLDEADIVATTLSFSGASLLTKMAGGF--DIVIIDEAAQAVETSTLIP 604
Query: 1091 M--------LLNDRRMLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYIELNAQGRARPSI 1142
+ L+ D + LP + + KY + DQSLF R P++ L Q R S+
Sbjct: 605 IQHGCKKVVLVGDPKQLPATIISPLAIKYKY-DQSLFQRLQEKNSPHM-LTTQYRMH-SL 661
Query: 1143 AQLYNWR--YRDLGDLPFLVDVPDYNGRG---------------------ESAPSPWFYQ 1179
+ + R Y+DL L+D P+ R E+ P
Sbjct: 662 IRAFPSRHFYQDL-----LLDGPNIPSRATHYHSNPFFGPLVFYDLSWSTETKPGGGSVF 716
Query: 1180 NEGEAEYVVSVY-IYMRLLGYP----ANKISILTTYNGQKLLIRDVINRQCVPYPFIGPP 1234
NE E + + ++ ++ ++ YP A++I I++ Y Q L +R++ YP I
Sbjct: 717 NEHECKMAMYLFQLFTKV--YPDEDFASRIGIISPYRQQVLALREIFKN----YPGIS-- 768
Query: 1235 SKVTTVDKFQGQQNDFILLSLVRTRF-----VGHLRDVRRLVVAMSRARLGLYVF 1284
+ TVD FQG++ + I+ S VR +G L DVRR+ VA++R R L +
Sbjct: 769 --IDTVDGFQGREREIIIFSCVRAPVEEGAGIGFLSDVRRMNVALTRPRSSLLIL 821
Score = 38.5 bits (88), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 777 SDSMQVVNMVDASDGKDQLIVEAYTPPDPGPYPQDQPRQNSVRFTPTQVGAIISGIQP-G 835
S+ M+ + M D DG+D ++++ P DQ S + +Q+ A+ S ++
Sbjct: 302 SNFMKTLMMRD-DDGEDGIVMKI------PPLLHDQ---FSSTYNDSQLNALTSALEGNA 351
Query: 836 LTMVVGPPGTGKTDTAVQILNVLYHNC 862
+T++ GPPGTGKT + +++VL H+
Sbjct: 352 ITLIQGPPGTGKTHVILGLISVLLHST 378
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus
norvegicus GN=Dna2 PE=3 SV=1
Length = 1059
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 126/320 (39%), Gaps = 73/320 (22%)
Query: 1020 FQELEECRAFELLKSTADRANYL-MTKQAKIVAMTC---THAALKRKDFLQLGFKYDNLL 1075
F E E CR L+S A A+ + +VA TC +H RK F D +
Sbjct: 712 FTEEEMCR----LRSIASLAHLEELYNSHPVVATTCMGISHPMFSRKTF-------DFCI 760
Query: 1076 MEESAQILEIETFIPM-------LLNDRRMLPPVVKNMAFQKYSHMDQSLFTRFVRLGIP 1128
++E++QI + P+ L+ D + LPP+V N + M +SLF R R
Sbjct: 761 VDEASQISQPICLGPLFFSRRFVLVGDHKQLPPLVLNREARALG-MSESLFKRLERNESA 819
Query: 1129 YIELNAQGRARPSIAQLYNWR------------------------------YRDLGDLPF 1158
++L Q R I L N Y D D P+
Sbjct: 820 VVQLTIQYRMNRKIMSLSNKLTYEGKLECGSDRVANAVITLPNLKDVRLEFYADYSDNPW 879
Query: 1159 LVDV-----PDYNGRGESAPSPWFYQNEG-----EAEYVVSVYIYMRLLGYPANKISILT 1208
L V P + P+P +N G EA +V + G + I I+
Sbjct: 880 LAGVFEPDNPVCFLNTDKVPAPEQIENGGVSNVTEARLIVFLTSTFIKAGCSPSDIGIIA 939
Query: 1209 TYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRTRFVGH----L 1264
Y Q I D++ R V +V TVDK+QG+ IL+S VR+ G L
Sbjct: 940 PYRQQLRTITDLLARSSVGM------VEVNTVDKYQGRDKSLILVSFVRSNEDGTLGELL 993
Query: 1265 RDVRRLVVAMSRARLGLYVF 1284
+D RRL VA++RA+ L +
Sbjct: 994 KDWRRLNVAITRAKHKLILL 1013
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus musculus
GN=Dna2 PE=2 SV=2
Length = 1062
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 127/322 (39%), Gaps = 75/322 (23%)
Query: 1020 FQELEECRAFELLKSTADRANYL-MTKQAKIVAMTC---THAALKRKDFLQLGFKYDNLL 1075
F E E CR+ +S A A+ + IVA TC H RK F D +
Sbjct: 713 FTEEEICRS----RSIASLAHLEELYNSHPIVATTCMGINHPIFSRKTF-------DFCI 761
Query: 1076 MEESAQILEIETFIPM-------LLNDRRMLPPVVKNMAFQKYSHMDQSLFTRFVRLGIP 1128
++E++QI + P+ L+ D + LPP+V N + M +SLF R R
Sbjct: 762 VDEASQISQPVCLGPLFFSRRFVLVGDHQQLPPLVVNREARALG-MSESLFKRLERNESA 820
Query: 1129 YIELNAQGRARPSIAQLYN--------------------------------WRYRDLGDL 1156
++L Q R I L N Y D D
Sbjct: 821 VVQLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALPNLKDARLSLQLYADYSDS 880
Query: 1157 PFLVDVPDYNG-----RGESAPSPWFYQNEG-----EAEYVVSVYIYMRLLGYPANKISI 1206
P+L V + + + P+P +N G EA +V + G + I +
Sbjct: 881 PWLAGVLEPDNPVCFLNTDKVPAPEQVENGGVSNVTEARLIVFLTSTFIKAGCSPSDIGV 940
Query: 1207 LTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRTRFVGH--- 1263
+ Y Q +I D++ R V +V TVDK+QG+ IL+S VR+ G
Sbjct: 941 IAPYRQQLRIISDLLARSSVGM------VEVNTVDKYQGRDKSLILVSFVRSNEDGTLGE 994
Query: 1264 -LRDVRRLVVAMSRARLGLYVF 1284
L+D RRL VA++RA+ L +
Sbjct: 995 LLKDWRRLNVALTRAKHKLILL 1016
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 129/311 (41%), Gaps = 89/311 (28%)
Query: 1048 KIVAMTCTHAALKRKDFLQLGF---KYDNLLMEESAQILEIETFIPMLL----------- 1093
+I TCT +FLQLGF + ++L +E+ Q E ET +P+++
Sbjct: 920 RITISTCTTLG----NFLQLGFPAGHFTHVLFDEAGQCTEPETMVPIVMLTKKRSQVVLS 975
Query: 1094 NDRRMLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPY------------------IELNAQ 1135
D R L +V + K S R + PY +L
Sbjct: 976 GDPRQLQSIVTSRIASKMG-FSISFLERLLERS-PYRKDLQRFPESSGYNPLVLTKLLYN 1033
Query: 1136 GRARPSIAQLYNWRYRDLGDLPFLV---------------------DVPDYNGR------ 1168
RA PSI +Y+ + D +P L D+P +G
Sbjct: 1034 YRALPSIMSIYSRLFYDDELIPVLSEKDSRESRLLSKLRCVFESEKDIPQAHGTFFYGII 1093
Query: 1169 GES-----APSPWFYQNEGEAEYVVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINR 1223
GE+ +PS WF E +++++ +Y A++I I+T Y Q ++R +
Sbjct: 1094 GENRQNNDSPS-WFNPQEVREVFLMTIALYR--ANVTADQIGIITPYQKQVKMLRSMFIG 1150
Query: 1224 QCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRT---------RF-VGHLRDVRRLVVA 1273
V P IG +V++FQGQ+ D IL+S VR+ RF +G +R +RL VA
Sbjct: 1151 TDVVMPKIG------SVEEFQGQERDIILISTVRSSEEILRMDARFSLGFVRCSKRLNVA 1204
Query: 1274 MSRARLGLYVF 1284
+SRAR + +F
Sbjct: 1205 VSRARAMMIIF 1215
Score = 37.4 bits (85), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 838 MVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYLLR 896
++ GPPG+GKT T ++ L L N P R L+ T SN + DL + +R + ++ LL+
Sbjct: 806 VLFGPPGSGKTMTLIETLLQLVRNLPGARILVGTPSNSSA-DL---VTKRLIDSKALLQ 860
>sp|P38859|DNA2_YEAST DNA replication ATP-dependent helicase/nuclease DNA2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DNA2 PE=1 SV=1
Length = 1522
Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 131/318 (41%), Gaps = 76/318 (23%)
Query: 1049 IVAMTCTHA-----ALKRKDFLQLGFKYDNLLMEESAQILEIETFIPM-------LLNDR 1096
+VA TC L KDF D ++++E++QI P+ ++ D
Sbjct: 1160 VVATTCLGINDILFTLNEKDF-------DYVILDEASQISMPVALGPLRYGNRFIMVGDH 1212
Query: 1097 RMLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYI-ELNAQGRARPSIAQLYNWRYRD--- 1152
LPP+VKN A + +++SLF F + EL Q R I L N+ D
Sbjct: 1213 YQLPPLVKNDA-ARLGGLEESLFKTFCEKHPESVAELTLQYRMCGDIVTLSNFLIYDNKL 1271
Query: 1153 -LGD---------LPFLVDVPDYNGRGESAPSPWFYQ----------------------- 1179
G+ LP + Y R ESA S + +
Sbjct: 1272 KCGNNEVFAQSLELPMPEALSRY--RNESANSKQWLEDILEPTRKVVFLNYDNCPDIIEQ 1329
Query: 1180 -------NEGEAEYVVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRQCVPYPFIG 1232
N GEAE + M L G P I ++T Y Q L++ + N+ Y +
Sbjct: 1330 SEKDNITNHGEAELTLQCVEGMLLSGVPCEDIGVMTLYRAQLRLLKKIFNKNV--YDGL- 1386
Query: 1233 PPSKVTTVDKFQGQQNDFILLSLVR--TRFVGH--LRDVRRLVVAMSRARLGLYVFCRRS 1288
++ T D+FQG+ I++S+VR ++ G L+++RR+ VAM+RA+ L + +S
Sbjct: 1387 ---EILTADQFQGRDKKCIIISMVRRNSQLNGGALLKELRRVNVAMTRAKSKLIIIGSKS 1443
Query: 1289 LFEQCYELQPTFRLLLQR 1306
E++ LL +R
Sbjct: 1444 TIGSVPEIKSFVNLLEER 1461
Score = 35.0 bits (79), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 838 MVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYLLRL 897
+++G PGTGKT +I+ +L +R L+ ++++ A++++ K+ ++ ++RL
Sbjct: 1071 LILGMPGTGKTTVIAEIIKILVS--EGKRVLLTSYTHSAVDNILIKLRNTNIS---IMRL 1125
Query: 898 G 898
G
Sbjct: 1126 G 1126
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo sapiens
GN=DNA2 PE=1 SV=3
Length = 1060
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 135/332 (40%), Gaps = 77/332 (23%)
Query: 1020 FQELEECRAFELLKSTADRANYLMTKQAKIVAMTC---THAALKRKDFLQLGFKYDNLLM 1076
F E E CR+ + +KS A L Q IVA TC H RK F D ++
Sbjct: 712 FTEQEICRS-KSIKSLA-LLEELYNSQL-IVATTCMGINHPIFSRKIF-------DFCIV 761
Query: 1077 EESAQILEIETFIPM-------LLNDRRMLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPY 1129
+E++QI + P+ L+ D + LPP+V N + M +SLF R +
Sbjct: 762 DEASQISQPICLGPLFFSRRFVLVGDHQQLPPLVLNREARALG-MSESLFKRLEQNKSAV 820
Query: 1130 IELNAQGRARPSIAQLYNWR--------------------------------YRDLGDLP 1157
++L Q R I L N Y D D P
Sbjct: 821 VQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNP 880
Query: 1158 FLVDVPDYNG-----RGESAPSPWFYQNEG-----EAEYVVSVYIYMRLLGYPANKISIL 1207
+L+ V + N + P+P + G EA+ +V + G + I I+
Sbjct: 881 WLMGVFEPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSPSDIGII 940
Query: 1208 TTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRTRFVGH---- 1263
Y Q +I D++ R IG +V TVDK+QG+ +L+S VR+ G
Sbjct: 941 APYRQQLKIINDLLARS------IGM-VEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGEL 993
Query: 1264 LRDVRRLVVAMSRARLGLYVF-CRRSLFEQCY 1294
L+D RRL VA++RA+ L + C SL CY
Sbjct: 994 LKDWRRLNVAITRAKHKLILLGCVPSL--NCY 1023
Score = 42.0 bits (97), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 837 TMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYLLR 896
T++VG PGTGKT T ++ +LY S L+ ++++ A++++ K+ + + LR
Sbjct: 644 TLIVGMPGTGKTTTICTLVRILYACGFS--VLLTSYTHSAVDNILLKLAKFKIG---FLR 698
Query: 897 LGQGEQELATDLDFSRQGRVNAMLVRRLELLSEV 930
LGQ ++ F+ Q + ++ L LL E+
Sbjct: 699 LGQIQKVHPAIQQFTEQEICRSKSIKSLALLEEL 732
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 116/253 (45%), Gaps = 47/253 (18%)
Query: 1071 YDNLLMEESAQILEIETFIPML-------LNDRRMLPPV-VKNMAFQKYSHMDQSLFTRF 1122
+D ++++E AQ LE +IP+L D R LPP V + A + + +SL R
Sbjct: 368 FDVVVVDECAQALEASCWIPLLKAPKCILAGDHRQLPPTTVSHRA--ALAGLSRSLMERL 425
Query: 1123 V-RLGIPYIE-LNAQGRARPSI-----AQLYNWRYRD--------LGDLPFLVD-----V 1162
+ G + L Q R +I +Y+ ++ L DLP + D V
Sbjct: 426 AEKHGAGVVRMLTVQYRMHQAIMCWASEAMYHGQFTSHPSVAGHLLKDLPGVTDTEETRV 485
Query: 1163 P----DYNGRGESAPSPWFYQNEGEAEYVVSVYIYMRLL---GYPANKISILTTYNGQKL 1215
P D G G Q++G V V ++++ L G A I+++ YN Q
Sbjct: 486 PLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVD 545
Query: 1216 LIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRTRF---VGHLRDVRRLVV 1272
L+R ++ + P ++ +VD FQG++ + +LL+ VR+ VG L + RR+ V
Sbjct: 546 LLRQSLSNK-------HPELEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINV 598
Query: 1273 AMSRARLGLYVFC 1285
A++RAR + V C
Sbjct: 599 AVTRARRHVAVIC 611
Score = 38.1 bits (87), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 833 QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPAR 892
Q L ++ GPPGTGKT T V+I +L + L SN A+++L E++ + +
Sbjct: 205 QKELAIIHGPPGTGKTTTVVEI--ILQAVKQGLKVLCCAPSNIAVDNLVERLA---LCKK 259
Query: 893 YLLRLGQ 899
+LRLG
Sbjct: 260 RILRLGH 266
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1 SV=6
Length = 2649
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 133/539 (24%), Positives = 206/539 (38%), Gaps = 119/539 (22%)
Query: 819 RFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALN 878
+ P+Q A+ ++ T++ GPPGTGKT + I+ +H SNQ
Sbjct: 2152 KLNPSQNVAVREALEKPFTVIQGPPGTGKTIVGLHIV-FWFHK-----------SNQ--- 2196
Query: 879 DLFEKIMQRDVPARYLLRLGQGEQELATDLDFSRQGRVNAMLVRRLELLSEVERLARSLQ 938
+ +Q P R RLG G L + +L+RR+EL
Sbjct: 2197 ----EQVQPGGPPRGEKRLG-GPCILYCGPSNKSVDVLAGLLLRRMELK----------- 2240
Query: 939 LPEDVGYTCETAGYFWLLHVYSRWEQFLAACADNEGKPTFVRDRFPFKEFFSNTPQPIFT 998
P V A F + V SR L + EG+P P P ++
Sbjct: 2241 -PLRVYSEQAEASEFPVPRVGSR---KLLRKSPREGRPNQSLRSITLHHRIRQAPNP-YS 2295
Query: 999 GDSFEKDMRAAKGCFRHLQTLF---QELEECRAFELLKSTADRANYLMTKQAKIVAMTCT 1055
+ D R +G + L + L E R FEL DR +++ TC+
Sbjct: 2296 SEIKAFDTRLQRGELFSREDLVWYKKVLWEARKFEL-----DRH--------EVILCTCS 2342
Query: 1056 HAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPM----------LLNDRRMLPPVVKN 1105
AA L + +L++E+ E ET IP+ LL D + L PVVKN
Sbjct: 2343 CAASASLKILDV----RQILVDEAGMATEPETLIPLVQFPQAEKVVLLGDHKQLRPVVKN 2398
Query: 1106 MAFQKYSHMDQSLFTRF---VRLGIPYIELNAQGRARPSIAQLYNWRYRDLGDLPFLVDV 1162
Q +D+SLF R+ + ++ A PS+A Y + + L V
Sbjct: 2399 ERLQNLG-LDRSLFERYHEDAHMLDTQYRMHEGICAFPSVA-FYKSKLKTWQGLRRPPSV 2456
Query: 1163 PDYNGRGESAPSPWFYQNEGEAEYVVS------------------VYIYMRL-LGYPA-- 1201
+ G+ ES P + + E +VS V I +L LG
Sbjct: 2457 LGHAGK-ESCPVIFGHVQGHERSLLVSTDEGNENSKANLEEVAEVVRITKQLTLGRTVEP 2515
Query: 1202 NKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRT--- 1258
I++LT YN Q I + R+ + V+++ K QG + ++L+S VRT
Sbjct: 2516 QDIAVLTPYNAQASEISKALRREGIAG------VAVSSITKSQGSEWRYVLVSTVRTCAK 2569
Query: 1259 -------------RFVGHLRDVRRLVVAMSRARLGLYVFCRRSLFEQCYELQPTFRLLL 1304
+F+G + D ++ VA++RA+ GL + L C P +R LL
Sbjct: 2570 SDLDQRPTKSWLKKFLGFVVDPNQVNVAVTRAQEGLCLIGDHLLLRCC----PLWRSLL 2624
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ECM32 PE=1 SV=1
Length = 1121
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 117/281 (41%), Gaps = 63/281 (22%)
Query: 1074 LLMEESAQILEIETFIPMLLNDRRMLPPVVKNMAFQKYSHMDQ---SLFTRFVRLGI--- 1127
++M+E+ Q E T +P+ L R V +S++ Q SLF R + G
Sbjct: 817 VIMDEATQSSEASTLVPLSLPGIRNFVFVGDEKQLSSFSNIPQLETSLFERVLSNGTYKN 876
Query: 1128 PYIELNAQGRARPSIAQ-----LYNWRYRD-LGD------------LPFLVDV-PDYNGR 1168
P + L+ Q R P I++ +YN +D + D + D+ P+ R
Sbjct: 877 PLM-LDTQYRMHPKISEFPIKKIYNGELKDGVTDEQKAWPGVQHPLFFYQCDLGPESRVR 935
Query: 1169 GESAPSPWF-YQNEGEA-EYVVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRQCV 1226
F Y+N+ E E V + I M P +I ++T Y+ Q+ L+ D++ + V
Sbjct: 936 STQRDIVGFTYENKHECVEIVKIIQILMLDKKVPLEEIGVITPYSAQRDLLSDILTKNVV 995
Query: 1227 PYP--------------FIGPPSK------------------VTTVDKFQGQQNDFILLS 1254
P F S+ V TVD FQG + FI+ S
Sbjct: 996 INPKQISMQQEYDEIELFNAAGSQGTAGSLQNNVINIINGLHVATVDSFQGHEKSFIIFS 1055
Query: 1255 LVRTRF---VGHLRDVRRLVVAMSRARLGLYVFCRRSLFEQ 1292
VR +G LRD RRL VA++RA+ GL V +++ +
Sbjct: 1056 CVRNNTENKIGFLRDKRRLNVALTRAKHGLIVVGNKNVLRK 1096
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 22/133 (16%)
Query: 817 SVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVL---YHNCPSQRTLIITHS 873
S + +Q A+ + +T++ GPPGTGKT T +I+ + +H P L + S
Sbjct: 646 SDKLNRSQKTAVEHVLNNSITILQGPPGTGKTSTIEEIIIQVIERFHAFP---ILCVAAS 702
Query: 874 NQALNDLFEKIMQRDVPARYLLRL--GQGEQELATD-------------LDFSRQGRVNA 918
N A++++ EKIM+ + P +LR+ + EQ+ + D + S +V A
Sbjct: 703 NIAIDNIAEKIME-NRPQIKILRILSKKKEQQYSDDHPLGEICLHNIVYKNLSPDMQVVA 761
Query: 919 MLVRRLELLSEVE 931
RR E++S+ E
Sbjct: 762 NKTRRGEMISKSE 774
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 111/255 (43%), Gaps = 53/255 (20%)
Query: 1071 YDNLLMEESAQILEIETFIPM--------LLNDRRMLPPVVKNMAFQKYSHMDQSLFTRF 1122
+D ++++E+AQ +E T IP+ L+ D + LP V + Q S S+F R
Sbjct: 484 FDVVIIDEAAQAVEPATLIPLATRCKQVFLVGDPKQLPATVISTVAQD-SGYGTSMFERL 542
Query: 1123 VRLGIPYIELNAQGRARPSI-----AQLY----------------NW-RYRDLGDLPFLV 1160
+ G P L Q R P I Q Y +W +YR G F
Sbjct: 543 QKAGYPVKMLKTQYRMHPEIRSFPSKQFYEGALEDGSDIEAQTTRDWHKYRCFGPFCFF- 601
Query: 1161 DVPDYNGRGESAPSPWFYQ-NEGEAEYVVSVYIYMRLLG-YP----ANKISILTTYNGQK 1214
D+ + G+ P + N E E+V+ IY RL+ YP +++++I++ YN Q
Sbjct: 602 DI--HEGKESQHPGATGSRVNLDEVEFVL--LIYHRLVTMYPELKSSSQLAIISPYNYQV 657
Query: 1215 LLIRDVINRQCVPYPFIGPPSKVT---TVDKFQGQQNDFILLSLVRTR---FVGHLRDVR 1268
+D F KV TVD FQG++ D + S VR +G L + R
Sbjct: 658 KTFKDRFKEM-----FGTEAEKVVDINTVDGFQGREKDVAIFSCVRANENGQIGFLSNSR 712
Query: 1269 RLVVAMSRARLGLYV 1283
R+ V ++RA+ + V
Sbjct: 713 RMNVGITRAKSSVLV 727
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 823 TQVGAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQ 865
+Q AI G+ + ++ GPPGTGKT T + IL + H P++
Sbjct: 261 SQKEAIDVGLSRKSFVLIQGPPGTGKTQTILSILGAIMHATPAR 304
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 115/252 (45%), Gaps = 45/252 (17%)
Query: 1071 YDNLLMEESAQILEIETFIPML-------LNDRRMLPPVVKNMAFQKYSHMDQSLFTRFV 1123
+D ++++E AQ LE +IP+L D R LPP + + + +SL R V
Sbjct: 368 FDVVVVDECAQALEASCWIPLLKAPKCILAGDHRQLPPTTISHKA-ALAGLSRSLMERLV 426
Query: 1124 -RLGIPYIE-LNAQGRARPSIAQ-----LYNWRYRD--------LGDLPFLVD-----VP 1163
+ G + L Q R +I + +Y+ + L DLP + D VP
Sbjct: 427 EKHGAGAVRMLTVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADTEETSVP 486
Query: 1164 ----DYNGRGESAPSPWFYQNEGEAEYVVSVYIYMRLL---GYPANKISILTTYNGQKLL 1216
D G G Q++G V V ++++ L G A I+++ YN Q L
Sbjct: 487 LLLIDTAGCGLLELDEEDSQSKGNPGEVRLVTLHIQALVDAGVHAGDIAVIAPYNLQVDL 546
Query: 1217 IRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRTRF---VGHLRDVRRLVVA 1273
+R ++ + P ++ +VD FQG++ + ++L+ VR+ VG L + RR+ VA
Sbjct: 547 LRQSLSNK-------HPELEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVA 599
Query: 1274 MSRARLGLYVFC 1285
++RAR + V C
Sbjct: 600 VTRARRHVAVIC 611
Score = 38.9 bits (89), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 822 PTQVGAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDL 880
P+Q A+ + Q + ++ GPPGTGKT T V+I +L + L SN A+++L
Sbjct: 193 PSQKEAVSFALAQKEVAIIHGPPGTGKTTTVVEI--ILQAVKQGLKILCCAPSNVAVDNL 250
Query: 881 FEKIMQRDVPARYLLRLGQGEQELATDLDFSRQGRVNAMLVR 922
E++ + + +LRLG A L+ ++Q ++A+L R
Sbjct: 251 VERLA---LCKKRILRLGHP----ARLLESAQQHSLDAVLAR 285
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=hcs1 PE=3 SV=1
Length = 660
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 141/320 (44%), Gaps = 75/320 (23%)
Query: 1014 RHLQTLFQELEECRAFELLKSTADRANYLMTKQAKIVAMT----CT-HAALKRKDFLQL- 1067
R + +++ + E R D Y A IV+ + CT H A R QL
Sbjct: 332 RERREIYKNIRELRK--------DYRKYEAKTVANIVSASKVVFCTLHGAGSR----QLK 379
Query: 1068 GFKYDNLLMEESAQILEIETFIPM-------LLNDRRMLPPVVKNMAFQKYSHMDQSLFT 1120
G ++D ++++E++Q LE + +IP+ L D L P V++ K ++ S+F
Sbjct: 380 GQRFDAVIIDEASQALEPQCWIPLLGMNKVILAGDHMQLSPNVQS----KRPYI--SMFE 433
Query: 1121 RFVRLGIPYIE--LNAQGRARPSIAQ------------------------LYNWRYRDLG 1154
R V+ ++ LN Q R I++ L N +L
Sbjct: 434 RLVKSQGDLVKCFLNIQYRMHELISKFPSDTFYDSKLVPAEEVKKRLLMDLENVEETELT 493
Query: 1155 DLP--FLVDVPDYNGRGESAPSPWFYQ----NEGEAEYVVSVYIYMRL-LGYPANKISIL 1207
D P F + +Y S FYQ N EA+ +VS +I L G A I+++
Sbjct: 494 DSPIYFYDTLGNYQEDDRSEDMQNFYQDSKSNHWEAQ-IVSYHISGLLEAGLEAKDIAVV 552
Query: 1208 TTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRT---RFVGHL 1264
T YN Q LIR ++ + G ++ +VDK QG++ + I+ SLVR+ R VG L
Sbjct: 553 TPYNAQVALIRQLLKEK-------GIEVEMGSVDKVQGREKEAIIFSLVRSNDVREVGFL 605
Query: 1265 RDVRRLVVAMSRARLGLYVF 1284
+ RRL VA++R + L V
Sbjct: 606 AEKRRLNVAITRPKRHLCVI 625
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYLL 895
L+++ GPPGTGKT T V+I+ L ++R L+ SN A++++ +++ +P ++
Sbjct: 227 LSLIHGPPGTGKTHTLVEIIQQLV--LRNKRILVCGASNLAVDNIVDRLSSSGIP---MV 281
Query: 896 RLGQGEQELATDLDFS 911
RLG + L + LD S
Sbjct: 282 RLGHPARLLPSILDHS 297
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1 SV=1
Length = 988
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 113/264 (42%), Gaps = 69/264 (26%)
Query: 1071 YDNLLMEESAQILEIETFIPML-------LNDRRMLPP---------------------- 1101
+D ++++E AQ LE +IP+L D + LPP
Sbjct: 368 FDVVVVDECAQALEASCWIPLLKAPKCILAGDHKQLPPTTVSHKAALAGLSRSLMERLAE 427
Query: 1102 -----VVKNMAFQKYSHMDQSLFTRFVRLGIPYIELNAQGRARPSIAQLYNWRYRDLGDL 1156
VV+ +A Q H TR+ + + +L A PS+A L DL
Sbjct: 428 KHGAAVVRMLAVQYRMHQ---AITRWASEAMYHGQLTAH----PSVAGHL------LKDL 474
Query: 1157 PFLVD-----VP----DYNGRGESAPSPWFYQNEGEAEYVVSVYIYMRLL---GYPANKI 1204
P + D VP D G G Q++G V V ++++ L G A I
Sbjct: 475 PGVADTEETSVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDI 534
Query: 1205 SILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRTRF---V 1261
+++ YN Q L+R ++ + P ++ +VD FQG++ + ++L+ VR+ V
Sbjct: 535 AVIAPYNLQVDLLRQSLSNK-------HPELEIKSVDGFQGREKEAVILTFVRSNRKGEV 587
Query: 1262 GHLRDVRRLVVAMSRARLGLYVFC 1285
G L + RR+ VA++RAR + V C
Sbjct: 588 GFLAEDRRINVAVTRARRHVAVIC 611
Score = 38.1 bits (87), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 822 PTQVGAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDL 880
P+Q A+ + Q + ++ GPPGTGKT T V+I +L + L SN A+++L
Sbjct: 193 PSQKEAVSFALAQKEVAIIHGPPGTGKTTTVVEI--ILQAVKQGLKVLCCAPSNIAVDNL 250
Query: 881 FEKIMQRDVPARYLLRLGQGEQELATDLDFSRQGRVNAMLVR 922
E++ + + +LRLG A L+ +Q ++A+L R
Sbjct: 251 VERLA---LCKKQILRLGHP----ARLLESVQQHSLDAVLAR 285
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 140/333 (42%), Gaps = 66/333 (19%)
Query: 996 IFTGDSFEKDMRAAKGCFRHLQTLFQELEECRAFELLKSTADRANYLMTKQAKIVAMTCT 1055
+F + +D R ++ L +EL+E +L+S A +V T T
Sbjct: 303 VFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTS---------ANVVLATNT 353
Query: 1056 HAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPML-------LNDRRMLPP------- 1101
A+ L +D ++++E AQ LE +IP+L D + LPP
Sbjct: 354 GASADGPLKLLPESYFDVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKA 413
Query: 1102 VVKNMAFQKYSHMDQSLFTRFVR-LGIPYIELNA------------QGRARPSIAQLYNW 1148
+ ++ + + R VR L + Y A Q A S+A+
Sbjct: 414 ALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHL-- 471
Query: 1149 RYRDLGDLPFLV-----DVP----DYNGRGESAPSPWFYQNEGEAEYVVSVYIYMRLL-- 1197
L DLP + VP D G G Q++G V V ++++ L
Sbjct: 472 ----LRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVD 527
Query: 1198 -GYPANKISILTTYNGQKLLIR-DVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSL 1255
G PA I++++ YN Q L+R +++R P ++ +VD FQG++ + ++LS
Sbjct: 528 AGVPARDIAVVSPYNLQVDLLRQSLVHRH--------PELEIKSVDGFQGREKEAVILSF 579
Query: 1256 VRTRF---VGHLRDVRRLVVAMSRARLGLYVFC 1285
VR+ VG L + RR+ VA++RAR + V C
Sbjct: 580 VRSNRKGEVGFLAEDRRINVAVTRARRHVAVIC 612
Score = 37.7 bits (86), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 833 QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPAR 892
Q L ++ GPPGTGKT T V+I +L + L SN A+++L E++ + +
Sbjct: 206 QKELAIIHGPPGTGKTTTVVEI--ILQAVKQGLKVLCCAPSNIAVDNLVERLA---LCKQ 260
Query: 893 YLLRLGQGEQELATDLDFSRQGRVNAMLVR 922
+LRLG A L+ +Q ++A+L R
Sbjct: 261 RILRLGHP----ARLLESIQQHSLDAVLAR 286
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus
GN=DNA2 PE=3 SV=3
Length = 1061
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 85/327 (25%), Positives = 130/327 (39%), Gaps = 74/327 (22%)
Query: 1020 FQELEECRAFELLKSTADRANYLMTKQAKIVAMTC---THAALKRKDFLQLGFKYDNLLM 1076
F E E CR+ + +KS A L Q IVA TC H RK F D ++
Sbjct: 712 FTEEEICRS-KSIKSLA-LLEELYNSQL-IVATTCMGINHPIFSRKTF-------DFCIV 761
Query: 1077 EESAQILEIETFIPM-------LLNDRRMLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPY 1129
+E++QI + P+ L+ D + LPP+V N + M +SLF R +
Sbjct: 762 DEASQISQPVCLGPLFFSRRFVLVGDHQQLPPLVLNREARALG-MSESLFKRLEQNKNAV 820
Query: 1130 IELNAQGRARPSIAQLYNWR--------------------------------YRDLGDLP 1157
++L Q R I L N Y D + P
Sbjct: 821 VQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLPNFKDVKLELEFYADYSENP 880
Query: 1158 FLVDVPDYNG-----RGESAPSPWFYQNEG-----EAEYVVSVYIYMRLLGYPANKISIL 1207
+L+ + N P+P + G EA+ VV + G + I I+
Sbjct: 881 WLIAAFEPNNPVCFLNTHKVPAPEQVEKGGVSNIMEAKLVVFLTSVFIKAGCKPSDIGII 940
Query: 1208 TTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRTRFVGH---- 1263
Y Q +I D++ + V +V TVD++QG+ +++S VR+ G
Sbjct: 941 APYRQQLKVISDLLAQSSVGM------VEVNTVDRYQGRDKSIVVVSFVRSNEDGTLGEL 994
Query: 1264 LRDVRRLVVAMSRARLGLYVF-CRRSL 1289
L+D RRL VA++RA+ L + C SL
Sbjct: 995 LKDWRRLNVAITRAKHKLILLGCVPSL 1021
Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 837 TMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYLLR 896
T++VG PGTGKT T ++ +LY S L+ ++++ A++++ K+ + + LR
Sbjct: 644 TLIVGMPGTGKTTTICTLVRILYACGFS--VLLTSYTHSAVDNILLKLAKFKIG---FLR 698
Query: 897 LGQGEQELATDLDFSRQGRVNAMLVRRLELLSEV 930
LGQ ++ F+ + + ++ L LL E+
Sbjct: 699 LGQIQKVHPDIQKFTEEEICRSKSIKSLALLEEL 732
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
laevis GN=dna2 PE=1 SV=1
Length = 1053
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 106/460 (23%), Positives = 183/460 (39%), Gaps = 101/460 (21%)
Query: 837 TMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYLLR 896
T++VG PGTGKT T ++ +LY S L+ ++++ A++++ K+ + V LR
Sbjct: 645 TLIVGMPGTGKTTTICTLVRILYACGFS--VLLTSYTHSAVDNILLKLKKFQVG---FLR 699
Query: 897 LGQGEQELATDL-DFSRQGRVNAMLVRRLELLSEVERLARSLQLPEDVGYTCETAGYFWL 955
LG+ Q+L D+ +FS + A + ++ LS +E L S + V TC +
Sbjct: 700 LGR-TQKLHPDVQEFSEEEICKA---KSIKSLSALEELYNSQPV---VATTCMGVNH--- 749
Query: 956 LHVYSRWEQFLAACADNEGKPTFVRDRFPF--KEFFSNTPQPIFTGDSFEKDMRAAKGCF 1013
P F R RF F + S QPI G F D G
Sbjct: 750 --------------------PIFTRRRFDFCIVDEASQISQPICLGPLFFADRFVLVGDH 789
Query: 1014 RHLQTLFQELEECRAFELLKSTADRANYLMTKQAKIVAMTCTHAALKRKDFLQLGFKYDN 1073
+ L L + E R + +S R L Q +V +T + ++ ++
Sbjct: 790 QQLPPLVKS-AEARELGMSESLFKR---LERNQEAVVQLT-------------VQYRMNS 832
Query: 1074 LLMEESAQIL---EIETFIPMLLNDRRMLPPVVKNMAFQKYSHMDQSLFTRFV-RLGIPY 1129
+M S +++ +E + N LP + + ++ +S++ + V P
Sbjct: 833 KIMALSNKLVYEGRLECASDRVSNAVVQLPHIKTLLLELEFRESQESMWIKDVLEPSNPV 892
Query: 1130 IELNAQGRARPSIAQLYNWRYRDLGDLPFLVDVPDYNGRGESAPSPWFYQNEGEAEYVVS 1189
LN + +P + S W EA+ V
Sbjct: 893 CFLNTE-------------------------KIPALETEEKGGISNWI-----EAKLVFH 922
Query: 1190 VY-IYMRLLGYPANKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQN 1248
+ +Y++ P++ I I+ Y Q +I + N +V TVDK+QG+
Sbjct: 923 LTKLYLKAGCRPSD-IGIIAPYRQQLKMISNYFN------SLSASAVEVNTVDKYQGRDK 975
Query: 1249 DFILLSLVRTRFVGH----LRDVRRLVVAMSRARLGLYVF 1284
I++S VR+ G L+D RRL VA++RA+ L +
Sbjct: 976 SVIIVSFVRSNIDGKLGDLLKDWRRLNVALTRAKHKLIML 1015
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus gallus
GN=DNA2 PE=2 SV=2
Length = 992
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 123/291 (42%), Gaps = 36/291 (12%)
Query: 1020 FQELEECRAFELLKSTADRANYLMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEES 1079
F E E CR+ + +KS D + +VA C + F+Q F D +++E+
Sbjct: 681 FTEEEICRS-KSIKSVTDLEE--LYNSQPVVATACM--GINHPIFVQKQF--DFCIVDEA 733
Query: 1080 AQILEIETFIPM-------LLNDRRMLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYIEL 1132
+QI + P+ L+ D + LPP+V+N + M +SLF R + ++L
Sbjct: 734 SQISQPICLGPLFCSKRFVLVGDHQQLPPLVQNSEARDLG-MSESLFKRLEQNQNAVVQL 792
Query: 1133 NAQGRARPSIAQLYNWRYRDLGDLPF--------LVDVPDYNG-RGESAPSPWFYQNEGE 1183
Q R I L N + G L ++P+ + E A + + E
Sbjct: 793 TVQYRMNSKIMSLSNKLVYE-GKLECGSEKVSNATANLPNLKMLKLEFADASKTWLKEVL 851
Query: 1184 AEYVVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKF 1243
++ G + I I++ Y Q +I D++ R +V T+DK+
Sbjct: 852 EPDKPVCFLNTEKAGCRPSDIGIISPYRHQLKVITDLMAR------LKENRVEVNTIDKY 905
Query: 1244 QGQQNDFILLSLVRT----RFVGHLRDVRRLVVAMSRARLGL-YVFCRRSL 1289
QG+ I++S VR L+D RRL VA++RA+ L V C SL
Sbjct: 906 QGRDKSIIIVSFVRNSNDENLGALLKDWRRLNVAITRAKHKLIMVGCVPSL 956
>sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nuclease dna2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dna2 PE=1 SV=2
Length = 1397
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 14/123 (11%)
Query: 1198 GYPANKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVR 1257
G + I I++ Y Q +++++ + I ++ TVD++QG+ D IL+S VR
Sbjct: 1232 GVKQSSIGIISIYKSQV----ELLSKNLKSFTEI----EINTVDRYQGRDKDIILISFVR 1283
Query: 1258 TR---FVGHL-RDVRRLVVAMSRARLGLYVFCRRSLFEQCYELQPTFRLLLQRPDKLALT 1313
+ VG L RD RL VA+SRA++ +F S + +LL +K T
Sbjct: 1284 SNSKNLVGELLRDWHRLNVALSRAKVKCIMFGSLSTLSSSNIVSHLLKLL--EKNKWIFT 1341
Query: 1314 MNE 1316
+NE
Sbjct: 1342 LNE 1344
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 823 TQVGAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLF 881
T V I++G +P +V GPPGTGKT T V+ + + N R L SN A + L
Sbjct: 531 TAVCNIVAGTSKPAPYLVFGPPGTGKTVTIVEAIKQVEKNTGGARILACAPSNSAADQLG 590
Query: 882 EK-IMQRDVPARYLLRL 897
EK I + V AR + R+
Sbjct: 591 EKLITSQHVDARNIYRI 607
>sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio GN=mov10b.2 PE=3 SV=1
Length = 1015
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 823 TQVGAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLF 881
+ V I++G +P +V GPPGTGKT T V+ + + N P L SN A + L
Sbjct: 536 SAVCNIVAGTSKPAPYLVFGPPGTGKTVTIVEAIKQVEKNIPDAYILACAPSNSAADQLC 595
Query: 882 EKIMQRD-VPARYLLRL 897
EK++ + V A + RL
Sbjct: 596 EKLITSEHVDAHKIYRL 612
Score = 35.4 bits (80), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 23/136 (16%)
Query: 1162 VPDYNGRGESAPSPWFYQNEGEAEYVVSVYIYMRLLGYPANKIS--------ILTTYNGQ 1213
VP + R ++PS + N E +V Y+ LL P IS I+ Y Q
Sbjct: 808 VPGKDERESNSPS---FFNIYEINILVD-YLKKLLLTQPKKGISRIFPKDIGIIAPYRKQ 863
Query: 1214 KLLIRDVINRQCVPYPFIGPPS-KVTTVDKFQGQQNDFILLSLVRTRF----------VG 1262
I+ I+ ++G + KV +V++FQGQ+ I++S VR+ +G
Sbjct: 864 VEKIKRAIDADKDFQDYMGIDNLKVGSVEEFQGQERKVIMVSTVRSSVKYISLDETFNIG 923
Query: 1263 HLRDVRRLVVAMSRAR 1278
L++ +R VA++RA+
Sbjct: 924 FLKNEKRFNVAVTRAK 939
>sp|F6QXW0|DNA2_XENTR DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
tropicalis GN=dna2 PE=3 SV=1
Length = 1048
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 15/127 (11%)
Query: 1162 VPDYNGRGESAPSPWFYQNEGEAEYVVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVI 1221
+P + S W EA+ V + G + I I+ Y Q +I +
Sbjct: 895 IPALETEEKGGISNWI-----EAKLVFCLTKLFLKAGCRPSDIGIIAPYRQQLKVISNYF 949
Query: 1222 NRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRTRFVGH----LRDVRRLVVAMSRA 1277
N +V TVDK+QG+ I++S VR+ G L+D RRL VA++RA
Sbjct: 950 N------SLSASAVEVNTVDKYQGRDKSVIIVSFVRSNIDGKLGDLLKDWRRLNVALTRA 1003
Query: 1278 RLGLYVF 1284
+ L +
Sbjct: 1004 KHKLIML 1010
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1
Length = 1211
Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 119/309 (38%), Gaps = 92/309 (29%)
Query: 1048 KIVAMTCTHAALKRKDFLQLGFK---YDNLLMEESAQILEIETFIPM-----------LL 1093
+I+ TC+ + L F Q+G + + ++ ++E+ Q E E IP+ L
Sbjct: 858 RIIITTCSSSGL----FYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMSDISGQIVLA 913
Query: 1094 NDRRMLPPVVKNM--------------------------AFQKYSHMDQSLFTRFVR--- 1124
D L PV+K+ AF + L T+ V+
Sbjct: 914 GDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYR 973
Query: 1125 -----LGIP---YIELNAQGRARPSIA-QLYNWRYRDLGDLPFLV-DVPDYNGRGESAPS 1174
L +P + + A P++ L W P + V R +PS
Sbjct: 974 SHEALLMLPSRLFYHRELEVCADPTVVTSLLGWEKLPKKGFPLIFHGVRGSEAREGKSPS 1033
Query: 1175 PWFYQNEGEAEYVVSVYIYMRLLGYP------ANKISILTTYNGQ----KLLIRDVINRQ 1224
WF N EA V V Y LL + A+ I ++T Y Q ++L+R+V
Sbjct: 1034 -WF--NPAEA---VQVLRYCCLLAHSISSQVSASDIGVITPYRKQVEKIRILLRNVDLMD 1087
Query: 1225 CVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRTR---------FVGHLRDVRRLVVAMS 1275
KV +V++FQGQ+ I++S VR+ F+G L + +R VA++
Sbjct: 1088 I----------KVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAIT 1137
Query: 1276 RARLGLYVF 1284
R + L V
Sbjct: 1138 RPKALLIVL 1146
Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 825 VGAIISG-IQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQA 876
V I+SG +P ++ GPPGTGKT T ++ + ++ P R L+ SN A
Sbjct: 753 VKRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNSA 805
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 825 VGAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEK 883
V I++G+ +P ++ GPPGTGKT T V+ + ++ R L SN A + L ++
Sbjct: 499 VKHIVTGMSRPAPYLIFGPPGTGKTVTLVEAIKQVWSCFKDARILACAPSNSAADLLCQR 558
Query: 884 IMQRDVPARYLLRL 897
++ P RY+ R+
Sbjct: 559 LLTNIAP-RYIYRI 571
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 65/135 (48%), Gaps = 28/135 (20%)
Query: 1172 APSPWFYQNEGEAEYVVSVYIYMRLL-------GYPA---NKISILTTYNGQKLLIRDVI 1221
A SP F+ N E E VV Y++ L G P +I I++ Y Q IR I
Sbjct: 786 AKSPSFF-NTAEIEVVVQ---YLQKLLQSQGRRGCPTISPKEIGIISPYRKQVEKIRLAI 841
Query: 1222 NRQ---CVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVR----------TRFVGHLRDVR 1268
+ P IG KV +V++FQGQ+ IL+S VR T +G L++ +
Sbjct: 842 TSKDPVLRALPDIGQ-LKVGSVEEFQGQERRVILISTVRSCSEYLQLDQTFRLGFLKNPK 900
Query: 1269 RLVVAMSRARLGLYV 1283
RL VA++RA+ L V
Sbjct: 901 RLNVALTRAKALLIV 915
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1 SV=1
Length = 1002
Score = 40.8 bits (94), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 16/84 (19%)
Query: 1204 ISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRTRF--- 1260
I ++T Y Q + I++V++R + KV +V++FQGQ+ I++S VR+
Sbjct: 709 IGVITPYRQQVMKIKEVLDRLDMT------EVKVGSVEQFQGQEKQVIIISTVRSTIKHN 762
Query: 1261 -------VGHLRDVRRLVVAMSRA 1277
+G L + RR VA++RA
Sbjct: 763 EFDRAYCLGFLSNPRRFNVAITRA 786
Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 838 MVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIM 885
++ GPPGTGKT T V+ + LY + R L+ SN A + + EK++
Sbjct: 418 VIHGPPGTGKTMTLVEAIVQLYTTQRNARVLVCAPSNSAADHILEKLL 465
>sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemic diarrhea virus (strain
CV777) GN=rep PE=3 SV=1
Length = 6781
Score = 40.4 bits (93), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 1236 KVTTVDKFQGQQNDFILLSLVRTRFVGHLRDVRRLVVAMSRARLG-LYVFCRRSLFE 1291
++ TVD QG + D+++ + +T H +V R VA++RA+ G L + C RSLF+
Sbjct: 5557 QIQTVDSSQGSEYDYVIYA--QTSDTAHASNVNRFNVAITRAKKGILCIMCDRSLFD 5611
>sp|P38036|CAS3_ECOLI CRISPR-associated endonuclease/helicase Cas3 OS=Escherichia coli
(strain K12) GN=ygcB PE=1 SV=2
Length = 888
Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 31/101 (30%)
Query: 820 FTPTQVGAIISG--IQPGLTMVVGPPGTGKTDTAV---------QILNVLYHNCPSQRT- 867
+ P Q+ ++ + PGLT++ P G+GKT+TA+ QI + + P+Q T
Sbjct: 291 YQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATA 350
Query: 868 -------------------LIITHSNQALNDLFEKIMQRDV 889
LI+ H N N LF+ I R +
Sbjct: 351 NAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAI 391
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,621,781
Number of Sequences: 539616
Number of extensions: 24111934
Number of successful extensions: 63251
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 63002
Number of HSP's gapped (non-prelim): 241
length of query: 1456
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1326
effective length of database: 121,419,379
effective search space: 161002096554
effective search space used: 161002096554
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)