Query 000509
Match_columns 1456
No_of_seqs 371 out of 1728
Neff 6.0
Searched_HMMs 46136
Date Mon Apr 1 17:16:20 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1806 DEAD box containing he 100.0 1E-229 3E-234 2044.3 54.4 1223 46-1356 1-1311(1320)
2 KOG1806 DEAD box containing he 100.0 1E-81 2.3E-86 761.5 4.5 939 42-1124 285-1310(1320)
3 KOG1802 RNA helicase nonsense 100.0 2.9E-64 6.3E-69 590.6 28.0 396 813-1311 404-835 (935)
4 KOG1803 DNA helicase [Replicat 100.0 1.1E-59 2.3E-64 555.9 24.3 406 818-1313 184-629 (649)
5 TIGR00376 DNA helicase, putati 100.0 5.3E-56 1.1E-60 557.2 38.7 429 819-1311 157-629 (637)
6 KOG1807 Helicases [Replication 100.0 3.1E-51 6.8E-56 487.1 33.6 260 1035-1305 687-969 (1025)
7 KOG1805 DNA replication helica 100.0 5E-52 1.1E-56 506.9 22.5 363 818-1317 668-1084(1100)
8 COG1112 Superfamily I DNA and 100.0 1.6E-33 3.4E-38 364.8 29.9 246 1043-1308 465-745 (767)
9 PF13087 AAA_12: AAA domain; P 100.0 2.6E-31 5.7E-36 289.2 9.2 171 1114-1288 1-200 (200)
10 KOG1801 tRNA-splicing endonucl 100.0 5.5E-30 1.2E-34 329.5 19.8 255 1046-1309 514-806 (827)
11 KOG1804 RNA helicase [RNA proc 100.0 1.4E-30 3.1E-35 323.7 10.3 264 1044-1319 417-726 (775)
12 PF13086 AAA_11: AAA domain; P 99.9 8.9E-27 1.9E-31 256.9 18.1 213 819-1105 1-235 (236)
13 PRK11054 helD DNA helicase IV; 99.9 6.6E-20 1.4E-24 232.7 34.5 208 1070-1305 430-675 (684)
14 PRK11773 uvrD DNA-dependent he 99.8 1.3E-19 2.7E-24 233.7 28.5 67 819-887 9-77 (721)
15 TIGR01075 uvrD DNA helicase II 99.8 3.1E-19 6.6E-24 230.2 27.3 67 819-887 4-72 (715)
16 TIGR01073 pcrA ATP-dependent D 99.8 1.4E-18 2.9E-23 224.7 29.4 67 819-887 4-72 (726)
17 PRK10919 ATP-dependent DNA hel 99.8 2.7E-18 5.8E-23 219.3 31.2 67 819-887 2-70 (672)
18 TIGR01448 recD_rel helicase, p 99.8 9.1E-18 2E-22 215.2 24.2 67 816-882 320-386 (720)
19 TIGR01447 recD exodeoxyribonuc 99.8 7.9E-18 1.7E-22 210.6 19.6 65 822-886 148-215 (586)
20 PRK10875 recD exonuclease V su 99.8 6.9E-17 1.5E-21 202.5 24.8 67 820-886 153-221 (615)
21 TIGR02768 TraA_Ti Ti-type conj 99.7 3.2E-16 7E-21 201.7 23.8 63 817-881 350-413 (744)
22 COG3973 Superfamily I DNA and 99.7 1E-14 2.2E-19 174.5 24.1 151 1127-1286 589-745 (747)
23 TIGR02785 addA_Gpos recombinat 99.6 4.2E-14 9E-19 191.3 32.3 66 819-886 1-67 (1232)
24 TIGR01074 rep ATP-dependent DN 99.6 6.5E-14 1.4E-18 180.0 26.5 67 819-887 1-69 (664)
25 PRK13826 Dtr system oriT relax 99.6 7.5E-14 1.6E-18 182.5 24.9 63 817-881 379-442 (1102)
26 TIGR00609 recB exodeoxyribonuc 99.6 5.7E-14 1.2E-18 188.0 24.3 54 834-887 9-65 (1087)
27 PRK13889 conjugal transfer rel 99.6 5.5E-14 1.2E-18 183.1 22.7 63 817-881 344-407 (988)
28 PRK13909 putative recombinatio 99.5 4.2E-13 9.1E-18 177.3 25.6 148 1067-1224 325-494 (910)
29 COG1074 RecB ATP-dependent exo 99.5 3.1E-12 6.7E-17 171.9 28.9 147 1069-1224 377-577 (1139)
30 PRK10876 recB exonuclease V su 99.5 6E-12 1.3E-16 169.3 29.6 150 1068-1226 375-576 (1181)
31 COG0210 UvrD Superfamily I DNA 99.4 3.4E-12 7.4E-17 163.9 22.4 156 1069-1228 212-376 (655)
32 PF13604 AAA_30: AAA domain; P 99.4 5.2E-13 1.1E-17 146.6 11.0 64 819-884 1-66 (196)
33 TIGR02784 addA_alphas double-s 99.4 1E-10 2.3E-15 158.5 29.1 52 835-886 11-63 (1141)
34 PRK13709 conjugal transfer nic 99.3 1.6E-10 3.5E-15 157.3 21.9 65 817-881 965-1033(1747)
35 PRK14712 conjugal transfer nic 99.3 9.3E-11 2E-15 157.7 18.9 64 818-881 834-901 (1623)
36 PF13245 AAA_19: Part of AAA d 99.2 5E-11 1.1E-15 111.4 7.2 59 826-884 1-62 (76)
37 PF00580 UvrD-helicase: UvrD/R 99.1 6.3E-10 1.4E-14 128.9 17.0 66 820-887 1-68 (315)
38 PF09848 DUF2075: Uncharacteri 99.1 3.7E-10 8E-15 134.9 13.7 52 835-886 2-53 (352)
39 PF01443 Viral_helicase1: Vira 99.1 7.4E-11 1.6E-15 131.8 5.0 49 1236-1284 184-233 (234)
40 TIGR02760 TraI_TIGR conjugativ 99.0 2.7E-09 5.9E-14 149.3 18.2 65 817-881 1017-1085(1960)
41 COG0507 RecD ATP-dependent exo 98.8 4.4E-08 9.5E-13 127.1 14.7 69 812-882 312-380 (696)
42 COG3972 Superfamily I DNA and 98.6 1.4E-07 3.1E-12 111.8 11.8 108 1180-1287 453-576 (660)
43 TIGR02760 TraI_TIGR conjugativ 98.5 1.9E-06 4.2E-11 121.4 19.5 67 815-883 425-493 (1960)
44 PF13361 UvrD_C: UvrD-like hel 98.4 4.5E-07 9.8E-12 106.3 8.5 95 1130-1226 1-102 (351)
45 KOG1804 RNA helicase [RNA proc 98.3 6.2E-07 1.3E-11 114.1 5.1 247 1047-1307 243-537 (775)
46 cd00046 DEXDc DEAD-like helica 98.3 5.5E-06 1.2E-10 82.9 10.8 51 837-887 3-53 (144)
47 PF02562 PhoH: PhoH-like prote 98.2 2.8E-06 6.1E-11 94.0 8.5 57 818-874 3-59 (205)
48 PRK11192 ATP-dependent RNA hel 98.2 7.8E-05 1.7E-09 91.8 20.9 69 819-887 23-96 (434)
49 smart00487 DEXDc DEAD-like hel 98.1 8.1E-06 1.7E-10 86.9 9.7 71 817-887 6-77 (201)
50 PRK11776 ATP-dependent RNA hel 98.1 0.00019 4.2E-09 89.1 23.1 70 818-887 25-95 (460)
51 PRK11634 ATP-dependent RNA hel 98.1 0.00016 3.4E-09 93.0 20.6 69 818-886 27-96 (629)
52 PRK10536 hypothetical protein; 98.0 5.7E-05 1.2E-09 86.0 14.5 58 817-875 57-114 (262)
53 PRK10590 ATP-dependent RNA hel 98.0 0.00027 5.9E-09 87.8 21.5 70 818-887 22-98 (456)
54 PHA02558 uvsW UvsW helicase; P 98.0 4.4E-05 9.6E-10 95.8 13.4 70 817-887 112-181 (501)
55 PTZ00424 helicase 45; Provisio 97.9 0.00022 4.8E-09 86.6 17.9 68 819-886 50-118 (401)
56 TIGR02773 addB_Gpos ATP-depend 97.9 0.0009 2E-08 92.1 25.6 146 1070-1226 196-362 (1158)
57 PF04851 ResIII: Type III rest 97.9 1.8E-05 4E-10 84.3 7.2 65 818-887 2-73 (184)
58 COG1061 SSL2 DNA or RNA helica 97.9 8E-05 1.7E-09 92.1 13.3 66 817-887 34-103 (442)
59 PRK04837 ATP-dependent RNA hel 97.8 0.0017 3.6E-08 80.0 22.9 69 819-887 30-106 (423)
60 PF00270 DEAD: DEAD/DEAH box h 97.8 7E-05 1.5E-09 79.1 9.4 67 821-887 1-67 (169)
61 PF13538 UvrD_C_2: UvrD-like h 97.7 2E-05 4.2E-10 77.4 3.3 50 1234-1284 55-104 (104)
62 PRK05580 primosome assembly pr 97.6 0.00052 1.1E-08 89.2 15.4 68 817-886 142-212 (679)
63 PRK04537 ATP-dependent RNA hel 97.6 0.0012 2.7E-08 84.2 18.0 70 818-887 30-107 (572)
64 PTZ00110 helicase; Provisional 97.6 0.0029 6.3E-08 80.5 20.7 70 818-887 151-226 (545)
65 PRK01172 ski2-like helicase; P 97.6 0.00038 8.3E-09 90.6 12.9 69 816-886 19-87 (674)
66 PLN00206 DEAD-box ATP-dependen 97.6 0.0028 6.1E-08 80.2 19.7 68 819-886 143-218 (518)
67 PRK13767 ATP-dependent helicas 97.5 0.002 4.2E-08 86.2 19.0 68 819-886 32-106 (876)
68 PF05970 PIF1: PIF1-like helic 97.5 0.00013 2.8E-09 88.1 6.8 60 819-880 1-66 (364)
69 PRK13766 Hef nuclease; Provisi 97.4 0.0014 2.9E-08 86.8 14.4 69 816-886 12-80 (773)
70 TIGR01054 rgy reverse gyrase. 97.4 0.0015 3.3E-08 89.0 14.8 70 816-887 75-144 (1171)
71 PRK09401 reverse gyrase; Revie 97.4 0.0011 2.5E-08 90.2 13.3 70 817-888 78-147 (1176)
72 cd00268 DEADc DEAD-box helicas 97.4 0.00069 1.5E-08 74.3 9.4 69 819-887 21-92 (203)
73 TIGR03117 cas_csf4 CRISPR-asso 97.3 0.0034 7.3E-08 80.4 16.3 62 826-887 7-69 (636)
74 PRK02362 ski2-like helicase; P 97.3 0.0013 2.8E-08 86.5 13.1 68 818-887 22-90 (737)
75 TIGR00614 recQ_fam ATP-depende 97.3 0.0029 6.2E-08 79.1 15.2 67 819-890 11-77 (470)
76 PRK01297 ATP-dependent RNA hel 97.3 0.0023 5.1E-08 79.9 13.7 70 818-887 108-185 (475)
77 PRK11664 ATP-dependent RNA hel 97.2 0.0018 3.9E-08 85.5 12.8 62 823-886 8-70 (812)
78 PRK00254 ski2-like helicase; P 97.2 0.0018 3.9E-08 85.0 12.8 67 818-886 22-90 (720)
79 COG1200 RecG RecG-like helicas 97.2 0.011 2.4E-07 74.7 18.6 259 817-1224 260-532 (677)
80 TIGR01970 DEAH_box_HrpB ATP-de 97.2 0.002 4.3E-08 85.0 12.7 61 824-886 6-67 (819)
81 TIGR03817 DECH_helic helicase/ 97.2 0.0047 1E-07 81.1 16.0 70 818-887 35-104 (742)
82 PRK14701 reverse gyrase; Provi 97.2 0.0034 7.3E-08 87.8 15.2 69 817-887 77-145 (1638)
83 cd01124 KaiC KaiC is a circadi 97.2 0.00044 9.5E-09 74.8 5.4 53 836-891 1-53 (187)
84 PF02399 Herpes_ori_bp: Origin 97.1 0.0078 1.7E-07 77.6 16.3 57 833-890 48-104 (824)
85 PRK05973 replicative DNA helic 96.9 0.0018 3.9E-08 73.6 6.8 62 827-891 56-118 (237)
86 KOG0354 DEAD-box like helicase 96.9 0.0049 1.1E-07 78.8 11.1 70 817-887 60-129 (746)
87 COG1111 MPH1 ERCC4-like helica 96.8 0.0062 1.3E-07 74.2 11.4 68 817-886 13-80 (542)
88 PRK10917 ATP-dependent DNA hel 96.8 0.0024 5.3E-08 83.2 8.7 69 817-887 259-333 (681)
89 COG0513 SrmB Superfamily II DN 96.8 0.06 1.3E-06 68.2 20.6 71 817-887 49-122 (513)
90 TIGR00643 recG ATP-dependent D 96.8 0.0024 5.2E-08 82.6 8.3 69 817-887 233-307 (630)
91 cd00009 AAA The AAA+ (ATPases 96.8 0.0031 6.7E-08 63.7 7.5 56 822-879 4-62 (151)
92 PRK11057 ATP-dependent DNA hel 96.8 0.016 3.4E-07 74.8 15.0 67 819-890 25-91 (607)
93 PF00448 SRP54: SRP54-type pro 96.7 0.0023 4.9E-08 70.9 6.0 55 834-890 1-58 (196)
94 PRK08074 bifunctional ATP-depe 96.7 0.045 9.6E-07 74.0 19.0 65 817-883 255-324 (928)
95 TIGR01389 recQ ATP-dependent D 96.7 0.022 4.9E-07 73.2 15.5 67 819-890 13-79 (591)
96 PRK08181 transposase; Validate 96.6 0.0046 1E-07 71.7 8.1 60 819-885 87-150 (269)
97 PRK07952 DNA replication prote 96.6 0.004 8.8E-08 71.2 6.9 58 821-885 78-143 (244)
98 TIGR01407 dinG_rel DnaQ family 96.6 0.055 1.2E-06 72.6 18.5 65 817-883 243-311 (850)
99 COG4889 Predicted helicase [Ge 96.5 0.037 8E-07 70.6 15.2 76 806-886 148-228 (1518)
100 TIGR00603 rad25 DNA repair hel 96.5 0.0089 1.9E-07 77.4 10.5 79 817-900 253-335 (732)
101 TIGR00595 priA primosomal prot 96.5 0.014 2.9E-07 73.7 11.2 47 838-886 1-47 (505)
102 smart00382 AAA ATPases associa 96.4 0.0023 4.9E-08 63.8 3.2 42 834-877 2-43 (148)
103 PRK12377 putative replication 96.4 0.0055 1.2E-07 70.3 6.6 36 835-872 102-137 (248)
104 PRK06526 transposase; Provisio 96.4 0.006 1.3E-07 70.2 7.0 52 819-872 80-134 (254)
105 TIGR01967 DEAH_box_HrpA ATP-de 96.4 0.011 2.5E-07 80.5 10.5 63 823-886 70-133 (1283)
106 PF01695 IstB_IS21: IstB-like 96.4 0.006 1.3E-07 66.5 6.5 45 835-886 48-92 (178)
107 PRK11448 hsdR type I restricti 96.4 0.0089 1.9E-07 81.4 9.4 71 818-888 412-487 (1123)
108 TIGR00580 mfd transcription-re 96.3 0.0091 2E-07 79.8 9.1 69 817-887 449-523 (926)
109 PRK13833 conjugal transfer pro 96.3 0.0062 1.3E-07 72.3 6.6 52 819-870 128-180 (323)
110 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.0063 1.4E-07 69.2 6.4 58 830-890 16-74 (237)
111 PRK07246 bifunctional ATP-depe 96.3 0.11 2.5E-06 69.1 18.8 64 817-883 243-310 (820)
112 PF06745 KaiC: KaiC; InterPro 96.3 0.007 1.5E-07 68.0 6.5 56 833-890 18-73 (226)
113 TIGR02525 plasmid_TraJ plasmid 96.3 0.0077 1.7E-07 72.9 7.2 56 813-870 130-185 (372)
114 PRK08116 hypothetical protein; 96.3 0.012 2.7E-07 68.2 8.6 34 836-871 116-149 (268)
115 PRK08533 flagellar accessory p 96.2 0.0075 1.6E-07 68.4 6.6 53 834-889 24-76 (230)
116 PRK14974 cell division protein 96.2 0.012 2.5E-07 70.5 8.0 56 833-890 139-197 (336)
117 PRK13894 conjugal transfer ATP 96.2 0.0082 1.8E-07 71.3 6.7 55 820-874 133-188 (319)
118 PRK10689 transcription-repair 96.1 0.012 2.6E-07 80.3 8.8 70 816-887 597-672 (1147)
119 PF00176 SNF2_N: SNF2 family N 96.1 0.025 5.5E-07 65.4 10.3 52 835-887 26-80 (299)
120 TIGR03878 thermo_KaiC_2 KaiC d 96.1 0.007 1.5E-07 69.8 5.4 39 834-874 36-74 (259)
121 COG1110 Reverse gyrase [DNA re 96.1 0.048 1E-06 71.2 13.1 69 817-887 80-148 (1187)
122 PRK06067 flagellar accessory p 96.0 0.012 2.5E-07 66.7 6.8 54 834-890 25-78 (234)
123 TIGR00064 ftsY signal recognit 96.0 0.014 2.9E-07 68.1 7.4 54 834-889 72-128 (272)
124 PF13401 AAA_22: AAA domain; P 96.0 0.0055 1.2E-07 62.1 3.7 53 834-886 4-60 (131)
125 TIGR03880 KaiC_arch_3 KaiC dom 96.0 0.013 2.8E-07 65.8 6.9 54 834-890 16-69 (224)
126 cd01120 RecA-like_NTPases RecA 96.0 0.011 2.4E-07 61.5 5.8 40 836-877 1-40 (165)
127 PRK06893 DNA replication initi 96.0 0.0081 1.8E-07 68.0 5.1 38 834-873 39-76 (229)
128 TIGR02782 TrbB_P P-type conjug 95.9 0.012 2.6E-07 69.4 6.6 54 819-872 116-170 (299)
129 KOG0922 DEAH-box RNA helicase 95.9 0.24 5.2E-06 62.7 17.9 57 827-886 58-117 (674)
130 PRK00771 signal recognition pa 95.9 0.015 3.3E-07 71.7 7.7 55 834-890 95-152 (437)
131 COG1204 Superfamily II helicas 95.9 0.029 6.4E-07 73.7 10.6 66 819-885 31-97 (766)
132 TIGR01650 PD_CobS cobaltochela 95.9 0.013 2.9E-07 69.3 6.8 42 817-858 46-88 (327)
133 PRK14722 flhF flagellar biosyn 95.9 0.017 3.7E-07 69.9 7.6 57 834-890 137-196 (374)
134 PRK09361 radB DNA repair and r 95.8 0.012 2.5E-07 66.2 5.7 42 830-873 18-60 (225)
135 PRK09183 transposase/IS protei 95.8 0.016 3.5E-07 67.0 6.9 50 820-871 85-137 (259)
136 PRK11131 ATP-dependent RNA hel 95.8 0.051 1.1E-06 74.2 12.5 62 824-886 78-140 (1294)
137 TIGR02655 circ_KaiC circadian 95.8 0.012 2.7E-07 73.8 6.4 54 834-890 263-316 (484)
138 PRK08084 DNA replication initi 95.8 0.016 3.5E-07 65.9 6.9 53 820-874 28-83 (235)
139 cd01129 PulE-GspE PulE/GspE Th 95.8 0.0097 2.1E-07 68.9 5.1 55 814-870 58-114 (264)
140 cd00984 DnaB_C DnaB helicase C 95.8 0.012 2.7E-07 66.5 5.9 54 830-885 8-62 (242)
141 PF00004 AAA: ATPase family as 95.8 0.0063 1.4E-07 61.5 3.1 22 837-858 1-22 (132)
142 TIGR00348 hsdR type I site-spe 95.8 0.017 3.6E-07 75.4 7.5 68 821-888 240-317 (667)
143 PRK04328 hypothetical protein; 95.8 0.017 3.7E-07 66.3 6.8 54 834-890 23-76 (249)
144 PF00308 Bac_DnaA: Bacterial d 95.8 0.018 3.9E-07 64.9 6.8 38 835-872 35-72 (219)
145 COG4098 comFA Superfamily II D 95.8 0.064 1.4E-06 62.8 11.1 66 819-886 97-166 (441)
146 TIGR01587 cas3_core CRISPR-ass 95.8 0.018 3.9E-07 69.1 7.2 51 837-887 2-52 (358)
147 PRK09694 helicase Cas3; Provis 95.7 0.028 6E-07 74.8 9.3 70 817-886 284-353 (878)
148 PRK10867 signal recognition pa 95.7 0.02 4.4E-07 70.5 7.6 56 834-890 100-158 (433)
149 PRK10416 signal recognition pa 95.7 0.02 4.4E-07 68.0 7.4 54 834-889 114-170 (318)
150 COG1484 DnaC DNA replication p 95.7 0.012 2.6E-07 67.8 5.1 38 833-872 104-141 (254)
151 TIGR03420 DnaA_homol_Hda DnaA 95.7 0.02 4.4E-07 63.9 6.8 41 833-875 37-77 (226)
152 PRK08727 hypothetical protein; 95.6 0.032 7E-07 63.4 8.1 40 833-874 40-79 (233)
153 smart00489 DEXDc3 DEAD-like he 95.6 0.041 8.9E-07 64.6 9.2 68 820-887 9-84 (289)
154 smart00488 DEXDc2 DEAD-like he 95.6 0.041 8.9E-07 64.6 9.2 68 820-887 9-84 (289)
155 KOG0744 AAA+-type ATPase [Post 95.6 0.016 3.5E-07 67.3 5.6 62 834-895 177-252 (423)
156 TIGR00959 ffh signal recogniti 95.6 0.025 5.5E-07 69.7 7.6 56 834-890 99-157 (428)
157 PRK04296 thymidine kinase; Pro 95.6 0.014 3.1E-07 64.1 5.0 35 836-872 4-38 (190)
158 TIGR02237 recomb_radB DNA repa 95.6 0.016 3.4E-07 64.2 5.3 39 834-874 12-50 (209)
159 cd03115 SRP The signal recogni 95.5 0.016 3.6E-07 62.2 5.2 34 836-871 2-35 (173)
160 TIGR01425 SRP54_euk signal rec 95.5 0.025 5.5E-07 69.5 7.3 47 834-882 100-149 (429)
161 PRK06835 DNA replication prote 95.5 0.028 6.1E-07 67.1 7.5 37 834-872 183-219 (329)
162 PF13191 AAA_16: AAA ATPase do 95.5 0.028 6.1E-07 60.3 6.8 40 822-861 6-51 (185)
163 COG0467 RAD55 RecA-superfamily 95.5 0.017 3.7E-07 66.5 5.4 57 830-889 18-75 (260)
164 PF13207 AAA_17: AAA domain; P 95.5 0.011 2.5E-07 59.2 3.5 22 837-858 2-23 (121)
165 COG0552 FtsY Signal recognitio 95.4 0.036 7.8E-07 65.3 7.8 56 833-890 138-196 (340)
166 cd01394 radB RadB. The archaea 95.4 0.019 4E-07 64.2 5.2 40 831-872 15-55 (218)
167 PF13481 AAA_25: AAA domain; P 95.4 0.026 5.7E-07 61.4 6.2 54 833-887 31-92 (193)
168 TIGR03499 FlhF flagellar biosy 95.3 0.035 7.5E-07 65.0 7.4 49 834-882 194-245 (282)
169 PF07652 Flavi_DEAD: Flaviviru 95.3 0.024 5.1E-07 59.6 5.3 51 835-887 5-56 (148)
170 TIGR02928 orc1/cdc6 family rep 95.3 0.02 4.3E-07 68.9 5.5 43 819-861 18-67 (365)
171 PRK12723 flagellar biosynthesi 95.3 0.036 7.8E-07 67.5 7.6 58 833-890 173-235 (388)
172 COG1198 PriA Primosomal protei 95.3 0.051 1.1E-06 70.6 9.3 73 813-887 192-268 (730)
173 PRK08903 DnaA regulatory inact 95.3 0.036 7.9E-07 62.3 7.1 50 821-872 25-78 (227)
174 TIGR02881 spore_V_K stage V sp 95.3 0.021 4.5E-07 65.9 5.2 26 836-861 44-69 (261)
175 TIGR03881 KaiC_arch_4 KaiC dom 95.2 0.031 6.8E-07 62.9 6.4 58 830-890 15-73 (229)
176 PF07728 AAA_5: AAA domain (dy 95.2 0.019 4.1E-07 59.3 4.2 41 837-881 2-42 (139)
177 PRK11889 flhF flagellar biosyn 95.2 0.038 8.2E-07 66.9 7.1 55 834-890 241-298 (436)
178 KOG0989 Replication factor C, 95.2 0.019 4E-07 66.6 4.3 27 834-860 57-83 (346)
179 TIGR02524 dot_icm_DotB Dot/Icm 95.2 0.038 8.1E-07 66.8 7.1 45 815-861 117-161 (358)
180 COG2805 PilT Tfp pilus assembl 95.1 0.032 7E-07 64.6 6.1 48 812-861 105-152 (353)
181 PF13671 AAA_33: AAA domain; P 95.1 0.013 2.9E-07 60.4 2.8 22 836-857 1-22 (143)
182 PF05729 NACHT: NACHT domain 95.1 0.03 6.5E-07 58.7 5.5 30 835-864 1-30 (166)
183 KOG2108 3'-5' DNA helicase [Re 95.1 0.017 3.7E-07 74.2 4.2 66 820-887 14-81 (853)
184 cd01131 PilT Pilus retraction 95.1 0.025 5.5E-07 62.6 5.0 38 834-872 1-38 (198)
185 TIGR02012 tigrfam_recA protein 95.1 0.037 8E-07 65.8 6.6 53 824-879 42-97 (321)
186 TIGR02533 type_II_gspE general 95.1 0.022 4.8E-07 71.5 5.0 46 813-858 219-266 (486)
187 PF13173 AAA_14: AAA domain 95.1 0.034 7.4E-07 57.0 5.6 43 834-879 2-44 (128)
188 TIGR02655 circ_KaiC circadian 95.1 0.035 7.6E-07 69.8 6.8 55 834-890 21-75 (484)
189 COG1643 HrpA HrpA-like helicas 95.1 0.1 2.2E-06 68.9 11.1 64 823-887 53-117 (845)
190 PRK10436 hypothetical protein; 95.1 0.024 5.3E-07 70.5 5.3 47 813-859 195-243 (462)
191 PRK05703 flhF flagellar biosyn 95.1 0.047 1E-06 67.5 7.6 56 834-889 221-279 (424)
192 COG2256 MGS1 ATPase related to 95.1 0.038 8.3E-07 66.2 6.5 42 836-882 50-91 (436)
193 PF05496 RuvB_N: Holliday junc 95.0 0.014 3.1E-07 65.5 2.9 24 835-858 51-74 (233)
194 PLN03025 replication factor C 95.0 0.043 9.3E-07 65.2 7.0 42 820-861 17-61 (319)
195 TIGR00604 rad3 DNA repair heli 95.0 0.048 1E-06 71.7 7.8 66 822-887 13-83 (705)
196 COG4096 HsdR Type I site-speci 95.0 0.092 2E-06 67.7 9.9 76 812-887 158-238 (875)
197 PRK00149 dnaA chromosomal repl 95.0 0.039 8.4E-07 68.8 6.6 48 835-883 149-196 (450)
198 PRK14088 dnaA chromosomal repl 94.9 0.043 9.4E-07 68.1 6.9 37 836-872 132-168 (440)
199 PRK12899 secA preprotein trans 94.9 0.091 2E-06 69.3 9.9 67 817-886 90-157 (970)
200 PRK00411 cdc6 cell division co 94.9 0.045 9.8E-07 66.6 7.0 41 822-862 36-83 (394)
201 PRK11823 DNA repair protein Ra 94.9 0.048 1E-06 67.8 7.1 58 830-890 75-133 (446)
202 TIGR01074 rep ATP-dependent DN 94.9 0.019 4.2E-07 74.8 3.8 55 1233-1287 550-613 (664)
203 cd00983 recA RecA is a bacter 94.8 0.047 1E-06 64.9 6.5 42 831-874 51-93 (325)
204 TIGR02538 type_IV_pilB type IV 94.8 0.04 8.7E-07 70.5 6.3 46 813-858 293-340 (564)
205 KOG0342 ATP-dependent RNA heli 94.8 1.6 3.5E-05 53.8 19.0 69 819-887 104-177 (543)
206 TIGR02640 gas_vesic_GvpN gas v 94.8 0.043 9.3E-07 63.5 5.9 24 833-856 20-43 (262)
207 PRK12402 replication factor C 94.8 0.04 8.6E-07 65.4 5.8 41 821-861 20-63 (337)
208 PRK06851 hypothetical protein; 94.7 0.022 4.8E-07 68.7 3.6 49 833-881 29-77 (367)
209 cd01121 Sms Sms (bacterial rad 94.7 0.059 1.3E-06 65.5 7.2 57 831-890 78-135 (372)
210 KOG0991 Replication factor C, 94.7 0.023 5E-07 63.4 3.3 27 834-860 48-74 (333)
211 TIGR00362 DnaA chromosomal rep 94.7 0.038 8.1E-07 67.9 5.6 38 835-872 137-174 (405)
212 PRK11331 5-methylcytosine-spec 94.7 0.047 1E-06 67.3 6.2 65 818-882 177-243 (459)
213 PHA00729 NTP-binding motif con 94.7 0.038 8.3E-07 62.4 5.1 24 836-859 19-42 (226)
214 PRK05642 DNA replication initi 94.7 0.042 9.1E-07 62.5 5.5 36 835-872 46-81 (234)
215 TIGR00416 sms DNA repair prote 94.6 0.061 1.3E-06 67.1 7.1 61 831-894 90-151 (454)
216 PHA03368 DNA packaging termina 94.6 0.23 5E-06 63.4 12.0 59 828-886 248-306 (738)
217 cd01122 GP4d_helicase GP4d_hel 94.6 0.06 1.3E-06 62.1 6.5 55 830-886 25-80 (271)
218 cd01130 VirB11-like_ATPase Typ 94.6 0.052 1.1E-06 59.4 5.7 49 819-870 9-58 (186)
219 PRK09302 circadian clock prote 94.6 0.058 1.3E-06 68.2 6.9 57 831-890 269-326 (509)
220 KOG0345 ATP-dependent RNA heli 94.6 0.26 5.6E-06 60.0 11.7 67 819-885 28-100 (567)
221 PRK08939 primosomal protein Dn 94.5 0.042 9.2E-07 65.0 5.2 35 836-872 158-192 (306)
222 PRK12726 flagellar biosynthesi 94.5 0.071 1.5E-06 64.4 7.0 55 834-890 206-263 (407)
223 COG0556 UvrB Helicase subunit 94.5 0.06 1.3E-06 66.2 6.3 60 823-887 16-80 (663)
224 TIGR02880 cbbX_cfxQ probable R 94.5 0.049 1.1E-06 63.8 5.5 26 836-861 60-85 (284)
225 PHA02653 RNA helicase NPH-II; 94.5 0.076 1.6E-06 69.0 7.6 70 817-886 158-244 (675)
226 TIGR03015 pepcterm_ATPase puta 94.4 0.069 1.5E-06 61.3 6.4 41 818-858 22-67 (269)
227 COG2804 PulE Type II secretory 94.4 0.055 1.2E-06 66.9 5.7 49 812-860 234-284 (500)
228 KOG0743 AAA+-type ATPase [Post 94.3 0.023 4.9E-07 69.1 2.4 22 837-858 238-259 (457)
229 PRK04914 ATP-dependent helicas 94.3 0.32 6.9E-06 65.5 13.2 59 817-875 150-210 (956)
230 PRK06921 hypothetical protein; 94.3 0.082 1.8E-06 61.4 6.8 38 834-872 117-154 (266)
231 PF13238 AAA_18: AAA domain; P 94.2 0.04 8.6E-07 55.4 3.5 22 837-858 1-22 (129)
232 TIGR00635 ruvB Holliday juncti 94.1 0.047 1E-06 64.1 4.5 25 834-858 30-54 (305)
233 PRK12608 transcription termina 94.1 0.066 1.4E-06 64.6 5.7 51 836-886 135-187 (380)
234 PRK14087 dnaA chromosomal repl 94.1 0.11 2.3E-06 64.9 7.6 38 835-872 142-179 (450)
235 PTZ00301 uridine kinase; Provi 94.1 0.064 1.4E-06 60.2 5.1 37 835-871 4-40 (210)
236 cd02019 NK Nucleoside/nucleoti 94.0 0.084 1.8E-06 48.5 5.0 22 837-858 2-23 (69)
237 PRK09354 recA recombinase A; P 94.0 0.086 1.9E-06 63.3 6.4 49 824-874 47-98 (349)
238 PRK12724 flagellar biosynthesi 94.0 0.11 2.3E-06 63.8 7.2 55 834-889 223-280 (432)
239 PRK09302 circadian clock prote 94.0 0.16 3.4E-06 64.4 9.0 58 831-890 27-85 (509)
240 TIGR03158 cas3_cyano CRISPR-as 94.0 0.14 3E-06 62.0 8.2 59 824-887 2-62 (357)
241 COG1702 PhoH Phosphate starvat 93.9 0.051 1.1E-06 64.2 4.1 55 818-872 127-181 (348)
242 PRK13768 GTPase; Provisional 93.9 0.063 1.4E-06 61.8 4.9 34 836-871 4-37 (253)
243 cd01393 recA_like RecA is a b 93.9 0.066 1.4E-06 59.9 4.9 44 831-874 15-63 (226)
244 TIGR01359 UMP_CMP_kin_fam UMP- 93.9 0.044 9.5E-07 59.3 3.3 23 836-858 1-23 (183)
245 KOG2028 ATPase related to the 93.9 0.065 1.4E-06 63.2 4.8 46 836-883 164-209 (554)
246 PF02492 cobW: CobW/HypB/UreG, 93.8 0.07 1.5E-06 58.1 4.7 35 835-872 1-35 (178)
247 PF03205 MobB: Molybdopterin g 93.8 0.075 1.6E-06 55.9 4.7 39 835-875 1-39 (140)
248 CHL00181 cbbX CbbX; Provisiona 93.8 0.05 1.1E-06 63.9 3.7 25 837-861 62-86 (287)
249 PRK12727 flagellar biosynthesi 93.7 0.12 2.6E-06 64.8 7.0 49 834-882 350-401 (559)
250 PF00437 T2SE: Type II/IV secr 93.7 0.07 1.5E-06 61.7 4.7 49 822-872 114-163 (270)
251 PRK04195 replication factor C 93.7 0.1 2.2E-06 65.7 6.5 52 817-873 15-73 (482)
252 COG1102 Cmk Cytidylate kinase 93.7 0.048 1E-06 58.2 3.0 22 837-858 3-24 (179)
253 PRK08233 hypothetical protein; 93.7 0.049 1.1E-06 58.6 3.1 25 834-858 3-27 (182)
254 PRK06995 flhF flagellar biosyn 93.6 0.084 1.8E-06 66.0 5.5 38 834-871 256-293 (484)
255 PRK00440 rfc replication facto 93.6 0.12 2.6E-06 60.7 6.6 41 821-861 22-65 (319)
256 PRK13342 recombination factor 93.5 0.16 3.4E-06 62.8 7.6 42 834-880 36-77 (413)
257 PRK08118 topology modulation p 93.5 0.058 1.3E-06 58.2 3.4 22 837-858 4-25 (167)
258 cd01983 Fer4_NifH The Fer4_Nif 93.5 0.11 2.5E-06 48.9 5.1 33 837-871 2-34 (99)
259 PRK14962 DNA polymerase III su 93.5 0.069 1.5E-06 66.8 4.5 25 835-859 37-61 (472)
260 TIGR01360 aden_kin_iso1 adenyl 93.5 0.06 1.3E-06 58.2 3.5 24 835-858 4-27 (188)
261 PF00910 RNA_helicase: RNA hel 93.5 0.068 1.5E-06 53.3 3.6 24 838-861 2-25 (107)
262 COG5192 BMS1 GTP-binding prote 93.4 0.093 2E-06 64.2 5.2 28 834-861 68-96 (1077)
263 COG1224 TIP49 DNA helicase TIP 93.4 0.082 1.8E-06 62.5 4.6 26 833-858 64-89 (450)
264 cd01123 Rad51_DMC1_radA Rad51_ 93.4 0.074 1.6E-06 59.9 4.2 44 831-874 15-63 (235)
265 PRK00080 ruvB Holliday junctio 93.4 0.062 1.3E-06 64.1 3.7 25 834-858 51-75 (328)
266 KOG0923 mRNA splicing factor A 93.4 0.59 1.3E-05 59.0 11.9 51 833-886 279-332 (902)
267 COG3854 SpoIIIAA ncharacterize 93.3 0.096 2.1E-06 58.7 4.7 39 837-875 140-181 (308)
268 COG1474 CDC6 Cdc6-related prot 93.3 0.21 4.4E-06 60.8 8.0 69 818-886 19-95 (366)
269 PHA02544 44 clamp loader, smal 93.3 0.13 2.9E-06 60.7 6.2 42 817-858 22-67 (316)
270 PRK03992 proteasome-activating 93.3 0.089 1.9E-06 64.4 4.9 24 835-858 166-189 (389)
271 cd01125 repA Hexameric Replica 93.2 0.099 2.2E-06 59.5 4.9 50 836-886 3-62 (239)
272 PRK13531 regulatory ATPase Rav 93.2 0.082 1.8E-06 65.7 4.4 30 830-859 35-64 (498)
273 TIGR03689 pup_AAA proteasome A 93.2 0.085 1.8E-06 66.4 4.6 25 835-859 217-241 (512)
274 TIGR01242 26Sp45 26S proteasom 93.1 0.078 1.7E-06 64.2 4.1 22 837-858 159-180 (364)
275 TIGR01420 pilT_fam pilus retra 93.1 0.15 3.1E-06 61.5 6.2 39 833-872 121-159 (343)
276 PRK06762 hypothetical protein; 93.1 0.077 1.7E-06 56.6 3.5 25 834-858 2-26 (166)
277 cd00544 CobU Adenosylcobinamid 93.1 0.12 2.6E-06 56.0 5.0 46 836-886 1-46 (169)
278 smart00763 AAA_PrkA PrkA AAA d 93.0 0.093 2E-06 63.1 4.4 25 834-858 78-102 (361)
279 cd02021 GntK Gluconate kinase 93.0 0.071 1.5E-06 55.8 3.1 22 836-857 1-22 (150)
280 TIGR00750 lao LAO/AO transport 93.0 0.12 2.7E-06 60.9 5.4 36 834-871 34-69 (300)
281 TIGR03600 phage_DnaB phage rep 93.0 0.21 4.7E-06 61.6 7.6 61 824-886 183-244 (421)
282 PRK12422 chromosomal replicati 92.9 0.18 3.8E-06 62.9 6.8 36 835-872 142-177 (445)
283 PF04665 Pox_A32: Poxvirus A32 92.9 0.11 2.3E-06 59.5 4.5 34 837-872 16-49 (241)
284 PF12846 AAA_10: AAA-like doma 92.9 0.13 2.7E-06 59.5 5.2 42 835-878 2-43 (304)
285 PRK00131 aroK shikimate kinase 92.9 0.092 2E-06 55.8 3.8 25 834-858 4-28 (175)
286 KOG0731 AAA+-type ATPase conta 92.9 0.077 1.7E-06 68.6 3.6 34 821-855 332-365 (774)
287 PRK04301 radA DNA repair and r 92.9 0.12 2.7E-06 61.4 5.2 59 830-888 97-161 (317)
288 PF06309 Torsin: Torsin; Inte 92.9 0.12 2.5E-06 53.5 4.2 24 839-862 58-81 (127)
289 PRK05541 adenylylsulfate kinas 92.8 0.15 3.3E-06 55.0 5.4 35 834-870 7-41 (176)
290 PLN03142 Probable chromatin-re 92.8 1.2 2.6E-05 60.6 14.6 63 813-875 163-230 (1033)
291 TIGR00176 mobB molybdopterin-g 92.8 0.16 3.4E-06 54.3 5.3 37 836-874 1-37 (155)
292 PRK14530 adenylate kinase; Pro 92.7 0.099 2.1E-06 58.5 3.9 24 835-858 4-27 (215)
293 PRK14086 dnaA chromosomal repl 92.7 0.19 4.2E-06 64.2 6.8 39 835-873 315-353 (617)
294 PRK14963 DNA polymerase III su 92.7 0.12 2.6E-06 65.2 5.0 25 836-860 38-62 (504)
295 PTZ00361 26 proteosome regulat 92.6 0.12 2.7E-06 64.0 4.9 24 835-858 218-241 (438)
296 PRK10751 molybdopterin-guanine 92.6 0.15 3.1E-06 55.7 4.8 41 833-875 5-45 (173)
297 PF01078 Mg_chelatase: Magnesi 92.6 0.17 3.6E-06 56.5 5.3 35 821-855 8-43 (206)
298 PTZ00112 origin recognition co 92.5 0.14 3E-06 67.0 5.1 44 817-860 756-807 (1164)
299 PRK03839 putative kinase; Prov 92.5 0.1 2.2E-06 56.6 3.5 22 837-858 3-24 (180)
300 cd02020 CMPK Cytidine monophos 92.4 0.11 2.3E-06 53.7 3.5 23 836-858 1-23 (147)
301 PF03029 ATP_bind_1: Conserved 92.4 0.096 2.1E-06 59.9 3.3 23 839-861 1-23 (238)
302 TIGR03574 selen_PSTK L-seryl-t 92.4 0.16 3.4E-06 58.3 5.0 33 836-870 1-33 (249)
303 COG0714 MoxR-like ATPases [Gen 92.4 0.12 2.7E-06 61.6 4.4 38 821-858 29-67 (329)
304 PF00931 NB-ARC: NB-ARC domain 92.4 0.1 2.2E-06 60.4 3.6 37 823-859 3-44 (287)
305 PRK14527 adenylate kinase; Pro 92.4 0.11 2.4E-06 56.9 3.7 26 833-858 5-30 (191)
306 cd03114 ArgK-like The function 92.4 0.18 3.9E-06 53.5 5.1 34 837-872 2-35 (148)
307 cd02025 PanK Pantothenate kina 92.4 0.17 3.7E-06 57.1 5.2 37 837-873 2-38 (220)
308 TIGR00665 DnaB replicative DNA 92.3 0.18 3.8E-06 62.6 5.8 58 827-886 187-245 (434)
309 PRK14723 flhF flagellar biosyn 92.3 0.24 5.3E-06 64.8 7.1 57 834-890 185-244 (767)
310 PRK07261 topology modulation p 92.3 0.11 2.3E-06 56.4 3.3 21 837-857 3-23 (171)
311 PF13555 AAA_29: P-loop contai 92.3 0.15 3.3E-06 46.3 3.7 26 836-861 25-50 (62)
312 PRK14961 DNA polymerase III su 92.3 0.13 2.8E-06 62.4 4.4 25 835-859 39-63 (363)
313 cd02028 UMPK_like Uridine mono 92.3 0.19 4E-06 55.0 5.2 34 836-871 1-34 (179)
314 cd02023 UMPK Uridine monophosp 92.3 0.17 3.7E-06 55.7 4.9 33 836-872 1-33 (198)
315 PRK06851 hypothetical protein; 92.3 0.15 3.3E-06 61.6 4.9 34 834-869 214-247 (367)
316 KOG0333 U5 snRNP-like RNA heli 92.3 1.4 3.1E-05 54.5 12.8 72 816-887 264-345 (673)
317 KOG4284 DEAD box protein [Tran 92.2 0.18 3.9E-06 63.1 5.4 70 819-888 47-117 (980)
318 PRK06620 hypothetical protein; 92.2 0.1 2.2E-06 58.6 3.2 20 835-854 45-64 (214)
319 PHA02244 ATPase-like protein 92.2 0.18 3.8E-06 60.9 5.3 31 827-857 111-142 (383)
320 PRK00889 adenylylsulfate kinas 92.2 0.19 4.1E-06 54.2 5.2 34 835-870 5-38 (175)
321 PF00406 ADK: Adenylate kinase 92.2 0.1 2.3E-06 54.9 3.0 20 839-858 1-20 (151)
322 COG1419 FlhF Flagellar GTP-bin 92.1 0.19 4E-06 61.1 5.4 39 834-872 203-241 (407)
323 TIGR02236 recomb_radA DNA repa 92.1 0.21 4.5E-06 59.1 5.8 48 827-874 87-139 (310)
324 KOG0952 DNA/RNA helicase MER3/ 92.1 0.36 7.8E-06 63.6 8.1 69 819-887 110-187 (1230)
325 PLN00020 ribulose bisphosphate 92.1 0.11 2.3E-06 62.5 3.3 25 834-858 148-172 (413)
326 PRK05480 uridine/cytidine kina 92.0 0.19 4E-06 55.9 5.0 35 834-872 6-40 (209)
327 PRK08506 replicative DNA helic 92.0 0.26 5.6E-06 61.9 6.6 57 827-886 184-241 (472)
328 TIGR01313 therm_gnt_kin carboh 92.0 0.11 2.3E-06 55.3 2.8 21 838-858 2-22 (163)
329 cd01428 ADK Adenylate kinase ( 92.0 0.12 2.6E-06 56.3 3.3 21 837-857 2-22 (194)
330 PRK14532 adenylate kinase; Pro 91.9 0.12 2.5E-06 56.5 3.1 21 837-857 3-23 (188)
331 PRK14531 adenylate kinase; Pro 91.9 0.13 2.8E-06 56.1 3.5 22 837-858 5-26 (183)
332 PRK04040 adenylate kinase; Pro 91.9 0.13 2.8E-06 56.7 3.4 24 835-858 3-26 (188)
333 PRK06696 uridine kinase; Valid 91.9 0.2 4.4E-06 56.4 5.1 36 834-871 22-57 (223)
334 KOG0727 26S proteasome regulat 91.9 0.17 3.8E-06 57.1 4.3 24 833-856 188-211 (408)
335 PLN02200 adenylate kinase fami 91.9 0.13 2.8E-06 58.7 3.5 25 834-858 43-67 (234)
336 PHA02542 41 41 helicase; Provi 91.8 0.21 4.6E-06 62.6 5.6 57 826-885 180-238 (473)
337 PRK13341 recombination factor 91.8 0.24 5.1E-06 65.1 6.1 24 835-858 53-76 (725)
338 PRK14956 DNA polymerase III su 91.8 0.15 3.3E-06 63.5 4.2 24 836-859 42-65 (484)
339 PF03308 ArgK: ArgK protein; 91.7 0.18 4E-06 57.9 4.5 32 838-871 33-64 (266)
340 PF07726 AAA_3: ATPase family 91.7 0.079 1.7E-06 54.9 1.4 22 837-858 2-23 (131)
341 PF03266 NTPase_1: NTPase; In 91.7 0.15 3.2E-06 55.4 3.5 25 837-861 2-26 (168)
342 TIGR02322 phosphon_PhnN phosph 91.7 0.14 3E-06 55.3 3.4 24 835-858 2-25 (179)
343 PRK11747 dinG ATP-dependent DN 91.6 0.41 8.9E-06 63.0 8.2 65 817-883 23-97 (697)
344 KOG1533 Predicted GTPase [Gene 91.6 0.15 3.3E-06 57.2 3.5 32 837-870 5-36 (290)
345 PRK09165 replicative DNA helic 91.6 0.3 6.6E-06 61.7 6.7 62 825-887 207-282 (497)
346 PRK13900 type IV secretion sys 91.6 0.25 5.5E-06 59.2 5.7 42 825-869 150-192 (332)
347 PTZ00454 26S protease regulato 91.5 0.14 3E-06 62.9 3.4 24 834-857 179-202 (398)
348 TIGR00041 DTMP_kinase thymidyl 91.5 0.27 5.8E-06 53.8 5.4 35 835-871 4-38 (195)
349 cd00227 CPT Chloramphenicol (C 91.5 0.17 3.7E-06 54.7 3.8 24 835-858 3-26 (175)
350 KOG0738 AAA+-type ATPase [Post 91.5 0.12 2.6E-06 61.7 2.7 19 837-855 248-266 (491)
351 PRK09376 rho transcription ter 91.5 0.28 6E-06 59.7 5.8 51 835-885 170-222 (416)
352 PF13476 AAA_23: AAA domain; P 91.4 0.15 3.3E-06 55.1 3.4 29 833-861 18-46 (202)
353 PRK06645 DNA polymerase III su 91.4 0.19 4.1E-06 63.5 4.6 26 834-859 43-68 (507)
354 PRK13851 type IV secretion sys 91.4 0.25 5.4E-06 59.5 5.4 48 821-871 148-196 (344)
355 PRK12678 transcription termina 91.4 0.21 4.6E-06 62.9 4.8 31 835-865 417-447 (672)
356 TIGR00631 uvrb excinuclease AB 91.4 0.44 9.6E-06 62.1 8.0 63 820-887 10-77 (655)
357 PRK07667 uridine kinase; Provi 91.4 0.26 5.7E-06 54.3 5.2 38 835-874 18-55 (193)
358 PRK05439 pantothenate kinase; 91.4 0.25 5.4E-06 58.7 5.2 37 836-872 88-124 (311)
359 PRK02496 adk adenylate kinase; 91.4 0.16 3.5E-06 55.2 3.5 22 837-858 4-25 (184)
360 KOG0651 26S proteasome regulat 91.3 0.14 3.1E-06 59.6 3.1 25 834-858 166-190 (388)
361 cd02027 APSK Adenosine 5'-phos 91.3 0.28 6E-06 51.9 5.1 26 836-861 1-26 (149)
362 PLN03187 meiotic recombination 91.3 0.29 6.3E-06 58.9 5.8 58 833-890 125-187 (344)
363 KOG0733 Nuclear AAA ATPase (VC 91.3 0.12 2.6E-06 64.6 2.6 53 835-887 224-281 (802)
364 COG0541 Ffh Signal recognition 91.3 0.48 1E-05 57.8 7.5 55 834-890 100-157 (451)
365 PRK09435 membrane ATPase/prote 91.3 0.25 5.5E-06 59.1 5.3 36 835-872 57-92 (332)
366 PRK13764 ATPase; Provisional 91.3 0.31 6.8E-06 62.5 6.3 26 834-859 257-282 (602)
367 PF03215 Rad17: Rad17 cell cyc 91.2 0.18 3.9E-06 63.8 4.1 25 834-858 45-69 (519)
368 PRK05748 replicative DNA helic 91.2 0.26 5.7E-06 61.4 5.6 60 824-885 192-252 (448)
369 COG0563 Adk Adenylate kinase a 91.2 0.17 3.7E-06 55.4 3.4 21 837-857 3-23 (178)
370 PF13521 AAA_28: AAA domain; P 91.2 0.13 2.9E-06 54.7 2.6 21 837-857 2-22 (163)
371 COG4088 Predicted nucleotide k 91.1 0.19 4.1E-06 55.7 3.6 27 835-861 2-28 (261)
372 PRK14528 adenylate kinase; Pro 91.1 0.18 3.8E-06 55.4 3.5 22 837-858 4-25 (186)
373 PF03796 DnaB_C: DnaB-like hel 91.1 0.4 8.7E-06 55.2 6.6 59 826-886 10-69 (259)
374 TIGR02238 recomb_DMC1 meiotic 91.0 0.29 6.4E-06 58.2 5.4 68 823-890 83-157 (313)
375 PF06068 TIP49: TIP49 C-termin 91.0 0.15 3.2E-06 61.2 2.8 26 833-858 49-74 (398)
376 CHL00195 ycf46 Ycf46; Provisio 91.0 0.22 4.8E-06 62.6 4.6 25 834-858 259-283 (489)
377 PRK13947 shikimate kinase; Pro 90.9 0.19 4.1E-06 53.8 3.4 22 837-858 4-25 (171)
378 cd02034 CooC The accessory pro 90.9 0.34 7.4E-06 49.3 5.1 44 837-885 2-45 (116)
379 COG1222 RPT1 ATP-dependent 26S 90.9 0.17 3.7E-06 60.1 3.1 20 836-855 187-206 (406)
380 PF00485 PRK: Phosphoribulokin 90.8 0.19 4.2E-06 55.3 3.5 26 836-861 1-26 (194)
381 COG2255 RuvB Holliday junction 90.8 0.25 5.5E-06 57.1 4.4 25 834-858 52-76 (332)
382 PF05673 DUF815: Protein of un 90.8 0.59 1.3E-05 53.5 7.3 72 822-897 33-112 (249)
383 cd00464 SK Shikimate kinase (S 90.8 0.21 4.5E-06 52.2 3.5 22 837-858 2-23 (154)
384 PRK14955 DNA polymerase III su 90.7 0.24 5.2E-06 60.9 4.5 37 823-859 23-63 (397)
385 PRK09751 putative ATP-dependen 90.7 1 2.3E-05 63.1 10.9 48 839-886 1-59 (1490)
386 PRK05800 cobU adenosylcobinami 90.7 0.24 5.2E-06 53.8 4.0 46 836-886 3-48 (170)
387 PRK14957 DNA polymerase III su 90.7 0.24 5.1E-06 63.0 4.5 24 836-859 40-63 (546)
388 COG1618 Predicted nucleotide k 90.7 0.26 5.7E-06 52.8 4.1 25 837-861 8-32 (179)
389 TIGR01351 adk adenylate kinase 90.7 0.19 4.1E-06 56.1 3.2 21 837-857 2-22 (210)
390 PRK08760 replicative DNA helic 90.7 0.6 1.3E-05 58.7 8.0 62 824-887 218-280 (476)
391 PF08433 KTI12: Chromatin asso 90.7 0.29 6.3E-06 57.1 4.8 35 835-871 2-36 (270)
392 COG1936 Predicted nucleotide k 90.6 0.17 3.7E-06 54.7 2.7 20 836-855 2-21 (180)
393 COG0593 DnaA ATPase involved i 90.6 0.39 8.4E-06 58.8 6.1 42 834-875 113-154 (408)
394 cd00550 ArsA_ATPase Oxyanion-t 90.6 0.29 6.4E-06 56.4 4.8 35 836-872 2-36 (254)
395 PRK05896 DNA polymerase III su 90.5 0.26 5.6E-06 63.1 4.6 37 823-859 23-63 (605)
396 COG4581 Superfamily II RNA hel 90.5 0.58 1.3E-05 62.8 7.9 70 816-887 116-185 (1041)
397 KOG0733 Nuclear AAA ATPase (VC 90.4 0.15 3.3E-06 63.7 2.3 65 822-887 534-603 (802)
398 PRK00279 adk adenylate kinase; 90.4 0.22 4.7E-06 55.8 3.5 21 837-857 3-23 (215)
399 TIGR00455 apsK adenylylsulfate 90.3 0.58 1.2E-05 51.0 6.6 40 829-870 13-52 (184)
400 COG0378 HypB Ni2+-binding GTPa 90.3 0.3 6.4E-06 53.9 4.2 33 836-871 15-47 (202)
401 KOG1970 Checkpoint RAD17-RFC c 90.3 0.22 4.9E-06 61.8 3.6 30 829-858 105-134 (634)
402 COG1201 Lhr Lhr-like helicases 90.3 0.81 1.7E-05 60.4 8.9 80 818-899 21-110 (814)
403 TIGR00554 panK_bact pantothena 90.3 0.37 7.9E-06 56.8 5.3 38 834-872 62-100 (290)
404 PF06414 Zeta_toxin: Zeta toxi 90.3 0.18 3.9E-06 55.8 2.6 27 832-858 13-39 (199)
405 TIGR00150 HI0065_YjeE ATPase, 90.3 0.38 8.3E-06 50.3 4.8 31 828-858 15-46 (133)
406 PHA02530 pseT polynucleotide k 90.2 0.19 4.2E-06 58.9 3.0 24 835-858 3-26 (300)
407 TIGR02397 dnaX_nterm DNA polym 90.2 0.28 6.1E-06 58.8 4.4 40 820-859 18-61 (355)
408 PRK05595 replicative DNA helic 90.2 0.71 1.5E-05 57.6 8.0 61 824-886 190-251 (444)
409 cd01672 TMPK Thymidine monopho 90.2 0.4 8.6E-06 52.0 5.2 34 836-871 2-35 (200)
410 TIGR00678 holB DNA polymerase 90.2 0.3 6.6E-06 53.3 4.3 34 827-860 7-40 (188)
411 PHA02624 large T antigen; Prov 90.2 0.28 6E-06 62.3 4.4 38 828-870 424-462 (647)
412 PRK05298 excinuclease ABC subu 90.2 0.73 1.6E-05 60.2 8.4 67 816-887 9-80 (652)
413 PRK06547 hypothetical protein; 90.2 0.24 5.3E-06 53.9 3.5 25 833-857 14-38 (172)
414 TIGR02621 cas3_GSU0051 CRISPR- 90.2 0.48 1E-05 62.7 6.7 68 820-887 16-85 (844)
415 TIGR01241 FtsH_fam ATP-depende 90.1 0.2 4.4E-06 63.2 3.2 22 836-857 90-111 (495)
416 COG1223 Predicted ATPase (AAA+ 90.0 0.2 4.3E-06 57.1 2.7 22 834-855 151-172 (368)
417 COG0210 UvrD Superfamily I DNA 90.0 0.18 3.9E-06 65.8 2.7 67 819-887 2-70 (655)
418 PTZ00088 adenylate kinase 1; P 89.9 0.25 5.5E-06 56.2 3.5 22 837-858 9-30 (229)
419 PRK14960 DNA polymerase III su 89.9 0.3 6.6E-06 62.8 4.4 26 834-859 37-62 (702)
420 TIGR00767 rho transcription te 89.9 0.37 8E-06 58.8 5.0 51 835-885 169-221 (415)
421 PRK14949 DNA polymerase III su 89.8 0.29 6.3E-06 64.7 4.2 26 834-859 38-63 (944)
422 PRK14721 flhF flagellar biosyn 89.8 0.44 9.5E-06 58.8 5.6 38 833-870 190-227 (420)
423 PLN02165 adenylate isopentenyl 89.7 0.29 6.4E-06 58.4 3.9 35 823-858 33-67 (334)
424 PRK06217 hypothetical protein; 89.7 0.25 5.5E-06 53.9 3.1 22 837-858 4-25 (183)
425 COG0470 HolB ATPase involved i 89.6 0.57 1.2E-05 55.1 6.3 26 836-861 26-51 (325)
426 PRK03846 adenylylsulfate kinas 89.5 0.58 1.2E-05 51.8 5.8 47 821-870 12-58 (198)
427 PRK14964 DNA polymerase III su 89.5 0.35 7.6E-06 60.7 4.5 26 834-859 35-60 (491)
428 cd02035 ArsA ArsA ATPase funct 89.4 0.45 9.8E-06 53.5 5.0 35 836-872 1-35 (217)
429 KOG3347 Predicted nucleotide k 89.4 0.28 6.1E-06 51.8 3.1 22 836-857 9-30 (176)
430 KOG0735 AAA+-type ATPase [Post 89.3 0.4 8.6E-06 61.1 4.7 51 837-887 704-759 (952)
431 PLN03137 ATP-dependent DNA hel 89.2 1.1 2.3E-05 60.9 8.9 69 818-891 459-527 (1195)
432 PRK14489 putative bifunctional 89.2 0.53 1.2E-05 57.2 5.8 42 834-877 205-246 (366)
433 TIGR00708 cobA cob(I)alamin ad 89.2 0.56 1.2E-05 51.2 5.3 38 833-872 4-41 (173)
434 TIGR00764 lon_rel lon-related 89.2 0.47 1E-05 61.4 5.5 51 833-884 36-86 (608)
435 cd03116 MobB Molybdenum is an 89.2 0.47 1E-05 51.0 4.7 38 836-875 3-40 (159)
436 KOG1942 DNA helicase, TBP-inte 89.2 0.32 7E-06 56.1 3.5 27 832-858 62-88 (456)
437 COG1199 DinG Rad3-related DNA 89.2 0.8 1.7E-05 59.8 7.7 69 818-887 14-86 (654)
438 PRK09519 recA DNA recombinatio 89.2 0.53 1.1E-05 62.0 5.9 50 824-875 47-99 (790)
439 PRK13407 bchI magnesium chelat 89.2 0.41 8.8E-06 57.5 4.6 24 835-858 30-53 (334)
440 PRK10865 protein disaggregatio 89.2 0.71 1.5E-05 62.2 7.3 37 835-873 599-635 (857)
441 PRK14493 putative bifunctional 89.1 0.49 1.1E-05 55.3 5.1 36 836-874 3-38 (274)
442 COG1703 ArgK Putative periplas 89.1 0.4 8.7E-06 56.0 4.3 34 836-871 53-86 (323)
443 PRK06761 hypothetical protein; 89.1 0.31 6.8E-06 57.1 3.5 25 835-859 4-28 (282)
444 PF12775 AAA_7: P-loop contain 89.1 0.22 4.8E-06 58.1 2.3 24 833-856 32-55 (272)
445 PRK13949 shikimate kinase; Pro 89.1 0.31 6.7E-06 52.8 3.2 22 837-858 4-25 (169)
446 PRK12339 2-phosphoglycerate ki 89.1 0.32 6.9E-06 54.1 3.4 24 834-857 3-26 (197)
447 PF01583 APS_kinase: Adenylyls 89.0 0.54 1.2E-05 50.5 4.9 34 835-870 3-36 (156)
448 PRK00625 shikimate kinase; Pro 89.0 0.34 7.3E-06 52.8 3.5 22 837-858 3-24 (173)
449 PRK01184 hypothetical protein; 89.0 0.3 6.5E-06 53.1 3.1 17 836-852 3-19 (184)
450 PRK14970 DNA polymerase III su 89.0 0.4 8.6E-06 58.1 4.4 43 818-860 19-65 (367)
451 cd01128 rho_factor Transcripti 89.0 0.41 8.9E-06 55.2 4.3 52 833-884 15-68 (249)
452 TIGR01618 phage_P_loop phage n 88.9 0.27 5.8E-06 55.6 2.7 21 834-854 12-32 (220)
453 PRK14958 DNA polymerase III su 88.9 0.41 8.9E-06 60.6 4.6 36 824-859 24-63 (509)
454 PRK05342 clpX ATP-dependent pr 88.8 0.36 7.8E-06 59.6 3.9 25 834-858 108-132 (412)
455 PHA03372 DNA packaging termina 88.8 1.8 4E-05 55.0 9.9 56 830-885 198-253 (668)
456 cd02037 MRP-like MRP (Multiple 88.8 0.51 1.1E-05 50.6 4.7 33 836-870 2-34 (169)
457 PRK14494 putative molybdopteri 88.7 0.49 1.1E-05 53.9 4.6 38 836-875 3-40 (229)
458 TIGR03263 guanyl_kin guanylate 88.7 0.32 6.9E-06 52.5 3.0 22 835-856 2-23 (180)
459 COG0606 Predicted ATPase with 88.7 0.48 1E-05 58.5 4.7 34 822-855 185-219 (490)
460 PF02374 ArsA_ATPase: Anion-tr 88.6 0.58 1.2E-05 55.6 5.3 36 835-872 2-37 (305)
461 PRK14952 DNA polymerase III su 88.6 0.39 8.4E-06 61.7 4.1 25 835-859 36-60 (584)
462 PRK00698 tmk thymidylate kinas 88.5 0.64 1.4E-05 51.0 5.3 35 834-870 3-37 (205)
463 PRK14738 gmk guanylate kinase; 88.5 0.34 7.5E-06 54.0 3.2 22 834-855 13-34 (206)
464 KOG0335 ATP-dependent RNA heli 88.5 0.59 1.3E-05 57.9 5.3 70 819-888 96-176 (482)
465 PRK09087 hypothetical protein; 88.4 0.38 8.3E-06 54.6 3.5 23 834-856 44-66 (226)
466 PRK08356 hypothetical protein; 88.4 0.33 7.1E-06 53.6 2.9 20 835-854 6-25 (195)
467 cd02024 NRK1 Nicotinamide ribo 88.4 0.35 7.6E-06 53.4 3.1 23 836-858 1-23 (187)
468 KOG0734 AAA+-type ATPase conta 88.3 0.29 6.4E-06 60.4 2.6 22 833-855 337-358 (752)
469 TIGR00235 udk uridine kinase. 88.3 0.4 8.6E-06 53.4 3.5 23 835-857 7-29 (207)
470 COG0464 SpoVK ATPases of the A 88.2 0.35 7.7E-06 61.0 3.5 22 835-856 277-298 (494)
471 cd02117 NifH_like This family 88.2 0.64 1.4E-05 51.9 5.1 32 837-870 3-34 (212)
472 PRK05986 cob(I)alamin adenolsy 88.2 0.73 1.6E-05 51.0 5.4 39 832-872 20-58 (191)
473 PRK14737 gmk guanylate kinase; 88.2 0.39 8.5E-06 52.9 3.3 24 834-857 4-27 (186)
474 PRK08154 anaerobic benzoate ca 88.1 0.6 1.3E-05 55.5 5.1 40 819-858 107-157 (309)
475 KOG0948 Nuclear exosomal RNA h 88.1 1.4 3E-05 56.5 8.3 72 815-888 125-200 (1041)
476 PHA02774 E1; Provisional 88.1 0.39 8.4E-06 60.8 3.6 25 834-858 434-458 (613)
477 PRK14526 adenylate kinase; Pro 88.1 0.4 8.8E-06 53.9 3.4 21 837-857 3-23 (211)
478 PRK10078 ribose 1,5-bisphospho 88.1 0.31 6.8E-06 53.3 2.5 22 835-856 3-24 (186)
479 PRK00300 gmk guanylate kinase; 88.1 0.39 8.3E-06 53.0 3.2 24 834-857 5-28 (205)
480 cd00561 CobA_CobO_BtuR ATP:cor 88.0 0.79 1.7E-05 49.4 5.4 36 834-871 2-37 (159)
481 PF13479 AAA_24: AAA domain 88.0 0.42 9E-06 53.7 3.4 19 836-854 5-23 (213)
482 COG0466 Lon ATP-dependent Lon 87.9 0.46 9.9E-06 60.9 4.0 27 833-859 349-375 (782)
483 PRK13975 thymidylate kinase; P 87.8 0.45 9.7E-06 52.1 3.5 24 835-858 3-26 (196)
484 PRK15453 phosphoribulokinase; 87.8 0.71 1.5E-05 54.0 5.2 26 833-858 4-29 (290)
485 PRK14529 adenylate kinase; Pro 87.8 0.45 9.7E-06 54.0 3.5 22 837-858 3-24 (223)
486 TIGR02688 conserved hypothetic 87.7 0.89 1.9E-05 55.9 6.2 28 834-861 209-237 (449)
487 TIGR00382 clpX endopeptidase C 87.7 0.42 9.1E-06 58.9 3.5 25 834-858 116-140 (413)
488 cd00071 GMPK Guanosine monopho 87.7 0.43 9.4E-06 49.8 3.1 21 836-856 1-21 (137)
489 TIGR03819 heli_sec_ATPase heli 87.7 0.8 1.7E-05 55.2 5.8 49 820-871 163-212 (340)
490 TIGR03575 selen_PSTK_euk L-ser 87.6 0.61 1.3E-05 56.1 4.7 36 836-872 1-36 (340)
491 CHL00176 ftsH cell division pr 87.6 0.43 9.2E-06 62.0 3.7 23 836-858 218-240 (638)
492 PRK14969 DNA polymerase III su 87.6 0.51 1.1E-05 60.1 4.3 38 822-859 22-63 (527)
493 PRK13765 ATP-dependent proteas 87.6 0.59 1.3E-05 60.6 4.9 51 833-884 49-99 (637)
494 PRK14954 DNA polymerase III su 87.4 0.56 1.2E-05 60.6 4.5 26 834-859 38-63 (620)
495 cd03112 CobW_like The function 87.4 0.96 2.1E-05 48.4 5.6 36 835-874 1-36 (158)
496 PF05127 Helicase_RecD: Helica 87.4 0.16 3.6E-06 55.4 -0.2 47 838-885 1-47 (177)
497 PLN02674 adenylate kinase 87.4 0.45 9.8E-06 54.7 3.3 23 835-857 32-54 (244)
498 PRK09825 idnK D-gluconate kina 87.3 0.53 1.1E-05 51.4 3.7 24 834-857 3-26 (176)
499 PTZ00035 Rad51 protein; Provis 87.2 0.69 1.5E-05 55.7 4.9 49 824-872 106-160 (337)
500 KOG0742 AAA+-type ATPase [Post 87.2 0.38 8.2E-06 57.7 2.6 20 837-856 387-406 (630)
No 1
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-229 Score=2044.26 Aligned_cols=1223 Identities=55% Similarity=0.864 Sum_probs=1152.6
Q ss_pred ChHhhhhchhhhHHhhccCCC-CCCCCHHHHHHHHHHHhhhcccCCCCCcchhhhHhhhhhhhhhcCCCCCccccchhhH
Q 000509 46 TLSEIQRDRLTKIASENWLKT-EKPFDAELVKEIYRTELTVKEGRKTVPLHRVMILEVSQYLENYLWPNFDAETASFEHV 124 (1456)
Q Consensus 46 t~~~~~~d~~~~la~~~W~~~-~~~~~~~vv~~i~~~~l~~~~~~~~f~~~~~~~Le~sqyLE~yLWp~f~~~~as~~hv 124 (1456)
|+++|+.+++|++|.++|.++ .+|||++||++||+.|+.+ +. +.+++|+||+||||||||||||+++.| .+||
T Consensus 1 ~l~~~~~~~~~~~a~~~w~~~~~~~f~~~~~~~i~~~~i~~----~~-~~q~~~ll~~~q~~en~lw~~~~~e~s-~~~~ 74 (1320)
T KOG1806|consen 1 TLSKIKKKQITNYANSNWGQNEGVPFDETVLQCIYEAEIVS----KD-AKQVLMLLEESQYLENYLWQNVNPEMS-LNHI 74 (1320)
T ss_pred ChhhHHHHHHHHHHHhhcccCCCCCCCHHHHHHHHHHHhhc----cc-HHHHHHHHHHHHHHHHhhhccCCHHHH-HHHH
Confidence 789999999999999999998 9999999999999999993 22 779999999999999999999999966 8999
Q ss_pred HHHHHhhhhc----------------------------------------------ccchHHHHHHHhhccccccccCCC
Q 000509 125 MSMILMVNEK----------------------------------------------SLEDEIVSKTVLRLASLQSWHSLS 158 (1456)
Q Consensus 125 ~si~lmvneK----------------------------------------------sle~~~vr~~~~~Lvsi~iW~~L~ 158 (1456)
||+|+|+||| |||++.||+.|.+|.+|+|||+|+
T Consensus 75 ~~~~~m~~~k~r~~~~aw~~~~~d~f~~ff~kvl~~~~~~l~e~~~~l~f~~~~fq~~~~~~~r~~v~ql~~l~~~~sl~ 154 (1320)
T KOG1806|consen 75 MSTCMMLNEKFRENVIAWDLFDEDRFQLFFEKVLEVSLSLLSEVTYMLQFITLCFQSLEIEKLRKLVYQLTNLSIWNSLD 154 (1320)
T ss_pred HHHHHHHHHHHhhhcchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhcchhhhccc
Confidence 9999999999 999999999999999999999999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHhHhhhccCCCCCCchhhHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCccccccc
Q 000509 159 YGRFQMELCLNPDLIKKWKRMVKREFKEAMKRGEPFDPSAMLEVKFLRNFIEEFLEVLENEVFVQRHHVNNEDDHADANS 238 (1456)
Q Consensus 159 ~~~~~~~l~~~~~l~K~w~~~~kk~~~~~~~~~~~~~~~~~~er~~l~~l~~~F~~~l~~~~~~~~~~~~~~~~~~~~~~ 238 (1456)
-+|.+.||+.+|+|.|+|+.++|+..+ ..+.++.....||.|+..||+.|..+|+.
T Consensus 155 ~~r~~~~l~~~~~l~k~~~~~k~~~~s----~~~k~~~~~~~~~~~~s~li~~~~~~~~~-------------------- 210 (1320)
T KOG1806|consen 155 LDRVKYELHDSPSLTKAWDSYKKKRPS----IVEKFPLHNLLERWFHSLLIKSFSYVLTE-------------------- 210 (1320)
T ss_pred hHhHHhhhccChHHHHHHHHhhhhccc----ccccccccccHHHHHHHHHHHHHHHHHcc--------------------
Confidence 999999999999999999999987433 33457788999999999999999999964
Q ss_pred cCCCCchhhhHHHHHHHHHHHHhhccCchhhHhHHhhhcceeeeecccccccccccchHHHHHHHHhhhccccccCCCCC
Q 000509 239 FLQPNDACVLYCERFMEFLIDLLSQLPTRRYLRPLVADLAIVAKCHLSTLYRHEKGKLFAQLVDLLQFYEKFEINDHVGK 318 (1456)
Q Consensus 239 ~~~~~~~~~~ycerflelliDL~sqlpTRR~~~~ll~d~~~l~~~~ls~l~~~~~~~lf~~l~~~l~~y~~f~idd~tG~ 318 (1456)
...+.|.||||||||+|||+|+||||||+||+++|.|++++|+|| ||.++.| ||+||+|+|+||+.|+|+|++|.
T Consensus 211 ---~~~~kv~~~~~~i~~~i~l~~~~ptrr~~~p~~~d~~~~~~~~ls-l~~~~~~-lf~ql~d~l~~~~~f~~t~~~g~ 285 (1320)
T KOG1806|consen 211 ---KQEAKVTYCERFIEMSIDLLSALPTRRFAHPVIEDSCFYTACRLS-LYYDENG-LFKQLTDDLNFYLKFEITDTRGN 285 (1320)
T ss_pred ---cccccchHHHHHHHHHHHHHHhccchhhhhhhhhhHHHHHHHhhe-eeeccch-HHHHHHHHHHhhcCCceecCcCc
Confidence 115689999999999999999999999999999999999999999 9998888 99999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHhhccccccChHHHHHhhcCCCHhhHhhccccceee---ecCC-CCCC
Q 000509 319 QLTDDEVLQSHYDRFQSFQLLAFKKIPKLQELALANIGSIHKRADLSKRLSVLSLKELQDLVCCKLKL---LSSK-DPWL 394 (1456)
Q Consensus 319 ~l~~~~~~~~h~~~~~~lQ~~~f~~f~~l~~~~l~~~~~i~~~~~l~~~l~~l~~~~l~~l~~~~l~l---~~~~-~~~~ 394 (1456)
+++.+++++.||.+..++|..+|++|+++.+|+++|+++|.+++.|.+.++.++ .|..| |....| .||. ..+.
T Consensus 286 ~~~t~~~i~~d~i~~~a~Q~waf~t~~~hld~sak~i~sIy~~e~l~~~~~sls--~l~mL-e~sqyLe~yL~p~y~~e~ 362 (1320)
T KOG1806|consen 286 ALTTEEAIRNDYIRYYALQLWAFSTFPKHLDLSAKNITSIYQREKLEEIFSSLS--SLKML-ESSQYLETYLPPNYYPEK 362 (1320)
T ss_pred eechhhhhhhhHHHHHHHHHhcccchhhhccchhHHHHHHHHHHHHhhcccHHH--HHHHH-HHHHHHHHhcCcccCchh
Confidence 999999999999999999999999999888999999999999999999999999 77777 766665 3454 7888
Q ss_pred CCHHHHHHHHHHHhhccccHHHHhhcCCCCCccccccccCCCcccccCCcccccCCccccccCChHHHHHHhHHHHHHHH
Q 000509 395 DSYDFLVEVIVSFFEKQQSQKEAINALPLYPNEQIMWDESLVPSINYSGEGCLALPKLNLQFLTLHDYLLRNFNLFRLES 474 (1456)
Q Consensus 395 ~~~~~l~e~l~~~~~~~~~~~~~~~~~~l~ptE~~l~~~~~~~~~~y~~~~~l~lpkLnlQyL~~~Dyl~R~~~l~r~e~ 474 (1456)
.+++||++++++.+||++++.+..+++|+||+|++|||+++.++++|. ++||||||||||||||+||+.|+|++||+|+
T Consensus 363 a~k~fLmsvvVm~nEK~rs~ve~~~~~~l~p~~~i~wd~~v~~~e~~l-e~cl~l~kl~lq~ltL~~~er~all~F~~~~ 441 (1320)
T KOG1806|consen 363 ADKEFLMSVVVMTNEKTRSQVEDYNEIPLYPLEDILWDESVMPSENYL-EGCLALPKLNLQFLTLHDYERRALLLFRLES 441 (1320)
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhhccccccchhhhhh-hhhhcchhhHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred HHHHHHhHHHHhhhcccccCCCCceeecccccccccCCceeEEEecCCCCCccCCceeEEEEEEEccccchhHHHHhhhc
Q 000509 475 TYEIREDIQEAVPHLLAYINNEGEAAFRGWSRMAVPIKEFKITEVKQPNIGEVKPSSVTAAITFSISSYKAHVRSEWNAL 554 (1456)
Q Consensus 475 ~~~ir~die~~i~rl~p~~~~~~~~~f~g~srma~pi~~~~i~~v~~p~~g~~~p~~V~a~i~~~l~~~~~~~r~ew~~l 554 (1456)
+|+|+.||.+.+.|+.| ..|++.|+||+||+.|+..|.|++|++|+||+..|.+|+|++++++...+.+++++|+.+
T Consensus 442 f~sie~ei~~~~~~~l~---~~~~vs~~~W~~l~~~r~~f~v~eV~~p~ige~~p~kv~ad~~~~~~~eRh~~~nli~~f 518 (1320)
T KOG1806|consen 442 FYSIEAEILNFVERYLR---LSGKVAFKGWARLAFPRNDFKVTEVAPPNIGENLPQKVTADVTLSRPGERHSILNLIENF 518 (1320)
T ss_pred HHHHHHHHHHHHHHHhh---hccchhhhhhhhccchhhhheeeecCCcchhhhhhhhhhhhccccCcchHHHHHHHHHHh
Confidence 99999999999999998 678899999999999999999999999999999999999999999998899999999999
Q ss_pred CCCCEEEEEEeeCCCCCCchhhhhcCCCccccCcceeeeeeEEEEEcCCCCccccccccccCCCCCCCCCCceEEEEEcc
Q 000509 555 KEHDVLFLLSIRPSFEPLSAEEAAKASVPQKLGLQCVRGCEIIEIRDEDGTLMNDFTGRIKRDEWKPPKGELRTVTVALD 634 (1456)
Q Consensus 555 r~~dv~fL~~v~~~~~~~~~~~~~~~~~~~~~gi~~vr~~ev~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~r~~~v~lD 634 (1456)
++||||||++|+| ..+.+..+........+.|+++|||||+.+++|.+|++|.| +.|+|.|.||
T Consensus 519 ~k~~~~~Li~i~P-~e~~~~~~~~~~~~eg~vp~~~v~yCErf~~f~idlesild---------------trRffnvvLd 582 (1320)
T KOG1806|consen 519 KKHDVLFLIYIRP-MEPKGLEGNALDPLEGRVPLTYVRYCERFGMFDIDLESILD---------------TRRFFNVVLD 582 (1320)
T ss_pred hhcCeeEEEEecc-CcccCcccccccccccccCcccchhhhhhhhhhhhhhhccC---------------CcceEEEecc
Confidence 9999999999999 44455555555555779999999999999999999999988 2499999999
Q ss_pred hhhhhhhHHHHhhcCCccccccceEEEecCccccchHHHHHHHHHHhhcccCCChhhHHHhhccCCCCcccccCCCCccc
Q 000509 635 TAQYHMDVTDIAEKGAEDAYGTFNVLMRRKPKENNFKAILESIRDLMNEYCIVPDWLHNIFLGYGNPSAAQWTNMPDFLE 714 (1456)
Q Consensus 635 ~~qy~~d~~~~~~~~~~d~y~~fN~~vrr~~~ennfk~vl~~i~~l~~~~~~~p~Wl~difLGygdp~~a~y~~~~~~~~ 714 (1456)
+.||+.|+..+.+.++.++|.+||+++||+|++||||++|++|++|||+.|.+|.|||++|||||+|++|||.+|++.+.
T Consensus 583 ~~h~~~lLs~li~~~ag~lf~qF~~~l~~~~~~n~~~~~l~~l~~l~n~~~~~p~wl~~~~Lg~g~pS~~~~~n~~~~~~ 662 (1320)
T KOG1806|consen 583 PFHYHHLLSGLIEYGAGDLFFQFNLLLRRKPEENNFKAILEIIRSLMNRACEVPKWLHDLFLGYGTPSIAHYPNMPNLSI 662 (1320)
T ss_pred hHHHHHHhhHHhhcCchhhhhhhhheeeeccCcchhHhHHHHHHHHHHhhhccchhhhccccccCCcchhhccCchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccccccCChhhhhhhcCCCeEEeeCCCCCCCCCCCCCeeEecCccccCccCCCCCCCccCCcccccccccccCCCCcc
Q 000509 715 VVDFKDTFIDTAHLEECFSDYEVSFVHPDGTENLDPRPPFRIRLPRTLKGTSRALPGNKKLTSDSMQVVNMVDASDGKDQ 794 (1456)
Q Consensus 715 ~~~~~dtf~~~~hl~~s~~~~~v~~~~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1456)
..| |||+...|+.++||++.|.+..+.+... ++ |... +++-.+++...+.++
T Consensus 663 ~~~--~~f~~~~ql~~~f~~~~v~~v~~~~al~--------~~---------------k~~~---~~nki~~~~~ae~~~ 714 (1320)
T KOG1806|consen 663 YAD--DTFLTVEHLQSSFPNCNVSSNLSTEALQ--------IK---------------KFYT---DQNKISADVTAEVPA 714 (1320)
T ss_pred HHH--HhhhhHHHHHHhccCCCccccCccHHHH--------HH---------------Hhhh---hccccCccccccchh
Confidence 888 9999999999999999986654443210 00 0000 011001111245678
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCH
Q 000509 795 LIVEAYTPPDPGPYPQDQPRQNSVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSN 874 (1456)
Q Consensus 795 ~~v~~~~~~~~~p~p~~~p~~n~v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN 874 (1456)
+.+.++..|.++|||.+ |+.|.+.+|+.|.+||.++++||+|+|+||||||||+++++|+..+++++|++|+||++|||
T Consensus 715 ~~v~~~~lp~~~py~y~-p~~n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyhn~p~qrTlivthsn 793 (1320)
T KOG1806|consen 715 LIVEPFTLPSNGPYPYN-PKKNQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYHNSPNQRTLIVTHSN 793 (1320)
T ss_pred hccCccccCCCCCCCcC-cccchhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhhhhhhhhhcCCCcceEEEEecc
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcccEEEccCcccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccchhhh
Q 000509 875 QALNDLFEKIMQRDVPARYLLRLGQGEQELATDLDFSRQGRVNAMLVRRLELLSEVERLARSLQLPEDVGYTCETAGYFW 954 (1456)
Q Consensus 875 ~AlD~L~ekL~~l~i~e~~llRlG~~e~~l~~~~~~sr~gRv~~~l~~r~~lL~ev~kLa~~l~~~~~~~~sceta~~f~ 954 (1456)
+|++++++|+.++++++++++|+|+|+.+++++.+|+++|||++++.+|..++.++++++++++.+++++++|++|+||+
T Consensus 794 qaln~lfeKi~~~d~d~rhLlrlg~ge~eletd~dfsrygrvn~~l~~r~~ll~ev~rla~sl~~pgdv~ytcetagyf~ 873 (1320)
T KOG1806|consen 794 QALNQLFEKIMALDVDERHLLRLGHGEEELETDKDFSRYGRVNYVLSRRLELLREVERLAKSLQAPGDVDYTCETAGYFF 873 (1320)
T ss_pred cchhHHHHHHHhcccchhhHHHhcccHHhhhcccchhheeeEeeeeccchHHHHHHHHhhhhhcCccccccccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhccCCC--CcccccccchhhhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000509 955 LLHVYSRWEQFLAACADNEGK--PTFVRDRFPFKEFFSNTPQPIFTGDSFEKDMRAAKGCFRHLQTLFQELEECRAFELL 1032 (1456)
Q Consensus 955 ~~~v~~~w~~fl~~l~~~~~~--~~~i~~~fpf~~~f~~~p~~l~~~~s~e~~l~~a~~~~~~i~~if~eL~e~r~fElL 1032 (1456)
..++.++|++|+..+....+. ..++...|||+.||.+.|+++|.+.+.+.+++.+.+|+++++.+|++|+++|+|++|
T Consensus 874 ~~~V~~~wee~l~~v~~~~~~~~~~~~~~~fpf~~~f~d~p~~vfeg~n~~~d~~~a~~cf~hl~~ifqqLee~rafell 953 (1320)
T KOG1806|consen 874 LAYVKRRWEEYLAKVDKGCDKDSVDIVSNRFPFHSYFGDKPKPPFEGYNKENDMDYATGCFRHLEYIFQQLEEFRAFELL 953 (1320)
T ss_pred hhHHHhhhHHHHHHhccCCCchhhhhHhhhCcchhhhhcCCCccccccchhhhhhhhhhhHHHHHHHHHHHHhccccccc
Confidence 999999999999999854444 456788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcEEEEcchhHhhhhhHHhhcCCCCCEEEEecCCCCChHHHHHHHHhC----------------CC
Q 000509 1033 KSTADRANYLMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPMLLN----------------DR 1096 (1456)
Q Consensus 1033 r~~~~r~~~lllk~a~IIa~T~t~aa~~~~~l~~lg~kfD~VIIDEAsQitE~EtlIPLll~----------------Dh 1096 (1456)
+...++..|++.++|+||+|||||++.++.++..+||+||+++|+|++|++|.++++|++++ ||
T Consensus 954 r~~~dr~~Yll~kqakiiamtcthaalkr~el~~lgf~ydnl~mEesaqile~etfiplLlq~p~dg~~rlkr~iligdh 1033 (1320)
T KOG1806|consen 954 RSGEDRELYLLVKQAKIIAMTCTHAALRRGDLVKLGFKYDNLLMEESAQILEIETFIPLLLQNPQDGHNRLKRWILIGDH 1033 (1320)
T ss_pred ccchhHhhccCcccceeeecccCChhhChhhHhhhceeechhhhhhccCCcccccccHHHhcCCcchhhHhhheeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999987 99
Q ss_pred CCCCceecchhhhhhcCCcccHHHHHHHcCCCeeeccccccCchhHHHHHHHHhccCCCCCc------------------
Q 000509 1097 RMLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYIELNAQGRARPSIAQLYNWRYRDLGDLPF------------------ 1158 (1456)
Q Consensus 1097 ~QLpPvV~s~~~~~~~~l~qSLFeRL~~~g~p~i~L~~QYR~~PsIa~~~n~~yy~l~dlp~------------------ 1158 (1456)
+|+||++++.++++|++++||+|.|+++.++|++.|+.|||.+++|+.+|+|+|..++++|+
T Consensus 1034 hqlPPv~~n~afqkysnm~qslf~r~vRl~ip~i~lnaqgrar~sI~~Ly~wry~lLg~l~~v~~lp~f~~aNagf~~~~ 1113 (1320)
T KOG1806|consen 1034 HQLPPVVKNQAFQKYSNMEQSLFTRLVRLGVPIIDLNAQGRARASIASLYNWRYPLLGNLPHVSPLPRFQYANAGFAYEF 1113 (1320)
T ss_pred cccCCcccchHHHHHhcchhhhhhcceecccceecchhhhhHHHHHHHHHHhhhcccccCcCCccchhhhccccCceeeE
Confidence 99999999999999999999999999999999999999999999999999999999999887
Q ss_pred -eeecCCCCCCCccCCCCCccCCHHHHHHHHHHHHHHHHhCCCCCCEEEecCCHHHHHHHHHHHHhcCCCCCCCCCCcee
Q 000509 1159 -LVDVPDYNGRGESAPSPWFYQNEGEAEYVVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKV 1237 (1456)
Q Consensus 1159 -fidV~~~~g~~e~~~~~~S~~N~~EAe~vv~iv~~L~~~Gy~~~~IgILTpY~aQ~~lIr~~L~~r~~~~~~~g~~v~V 1237 (1456)
|++|+++.|.+++.|++++++|.+||+|+++++.||+..|||+++|.|+|+|++|+.+|++++..+|..+|++|.|-+|
T Consensus 1114 qlinv~Df~g~gEt~p~p~fyQnlgeaey~vAly~YMr~Lgypa~Kisilttyngq~~lirdii~rrc~~nPfig~pAkv 1193 (1320)
T KOG1806|consen 1114 QFINVPDFKGSGETEPSPGFYQNLGEAEYAVALFQYMRLLGYPANKISILTTYNGQKSLIRDIINRRCSHNPFIGQPAKV 1193 (1320)
T ss_pred EEecchhhccccccCCCcccccCCchhhhHHHHHHHHHHhCCchhHeeEEEeecchHHHHHHHHHHhccCCCccCCcccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCccCCEEEEEecccCCccccccchhhHHHHhhhhccEEEEechhhhhhhccchHHHHHHHcCccccccccCCc
Q 000509 1238 TTVDKFQGQQNDFILLSLVRTRFVGHLRDVRRLVVAMSRARLGLYVFCRRSLFEQCYELQPTFRLLLQRPDKLALTMNEK 1317 (1456)
Q Consensus 1238 ~TVD~fQG~E~DvVIlSlVRs~~~GfL~d~rRLNVAlSRAR~~LiIvGn~~~l~~~~~~~~~~~~Ll~~~~~l~l~~~e~ 1317 (1456)
+|||+|||+++|+||+|+|+++.+|+++|++|+.||+||||.|+||+|+.++|.+|.++.++|+.|.++|+++.+.+++.
T Consensus 1194 ~tvdk~qgqqndfiIlslv~tr~~gh~rdvrrlvva~srarlglyv~~r~~lf~~c~eLtp~~~~l~k~p~~lll~~~ei 1273 (1320)
T KOG1806|consen 1194 TTVDKFQGQQNDFIILSLVRTREVGHLRDVRRLVVAMSRARLGLYVLCRRSLFRSCRELTPAFNELEKRPDKLLLTPGEI 1273 (1320)
T ss_pred CccccccccccceEEeeehhhhhhhhhccHHHHHHHHHHhhccchhHHHHHHHHHHHhccHHHHHHhhCcchhccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCceeccChHHHHHHHHHHHHHHHHHHH
Q 000509 1318 TSYTDRHVEDIGVPYLVSGIEDIHAIVNSLLYQRHLAIQ 1356 (1456)
Q Consensus 1318 ~p~~~r~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~ 1356 (1456)
+|+. |..+....++++.|+.||+.+|++|++...+...
T Consensus 1274 ~pt~-r~~~~~~~~~~I~nm~~m~~~v~e~~~~~~~t~~ 1311 (1320)
T KOG1806|consen 1274 YPTS-RKIGSSVETFEIENLLHMANFVVEMYMKRLQTNM 1311 (1320)
T ss_pred cccc-cCCCcccccHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999 6777788899999999999999999999988654
No 2
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=100.00 E-value=1e-81 Score=761.49 Aligned_cols=939 Identities=12% Similarity=-0.072 Sum_probs=777.2
Q ss_pred CCCCChHhhhhchhhhHHhhccCCC----CCCCCHHHHHHHHHHHhhhcccCCCCCcch-hhhHhhhhhhhhhcCCCCCc
Q 000509 42 PSSITLSEIQRDRLTKIASENWLKT----EKPFDAELVKEIYRTELTVKEGRKTVPLHR-VMILEVSQYLENYLWPNFDA 116 (1456)
Q Consensus 42 ~~~~t~~~~~~d~~~~la~~~W~~~----~~~~~~~vv~~i~~~~l~~~~~~~~f~~~~-~~~Le~sqyLE~yLWp~f~~ 116 (1456)
.+..|.++|+.|.+.++|.++|++. +.+|+.+.|..||..|.. ...|+..| |++||++||||.||||||.+
T Consensus 285 ~~~~t~~~i~~d~i~~~a~Q~waf~t~~~hld~sak~i~sIy~~e~l----~~~~~sls~l~mLe~sqyLe~yL~p~y~~ 360 (1320)
T KOG1806|consen 285 NALTTEEAIRNDYIRYYALQLWAFSTFPKHLDLSAKNITSIYQREKL----EEIFSSLSSLKMLESSQYLETYLPPNYYP 360 (1320)
T ss_pred ceechhhhhhhhHHHHHHHHHhcccchhhhccchhHHHHHHHHHHHH----hhcccHHHHHHHHHHHHHHHHhcCcccCc
Confidence 4567899999999999999999987 889999999999999988 56666555 99999999999999999999
Q ss_pred cccchhhHHHHHHhhhhc--------------------------------------------------------------
Q 000509 117 ETASFEHVMSMILMVNEK-------------------------------------------------------------- 134 (1456)
Q Consensus 117 ~~as~~hv~si~lmvneK-------------------------------------------------------------- 134 (1456)
++++++|.|||++|.|||
T Consensus 361 e~a~k~fLmsvvVm~nEK~rs~ve~~~~~~l~p~~~i~wd~~v~~~e~~le~cl~l~kl~lq~ltL~~~er~all~F~~~ 440 (1320)
T KOG1806|consen 361 EKADKEFLMSVVVMTNEKTRSQVEDYNEIPLYPLEDILWDESVMPSENYLEGCLALPKLNLQFLTLHDYERRALLLFRLE 440 (1320)
T ss_pred hhhhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhhccccccchhhhhhhhhhcchhhHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999
Q ss_pred ---ccchHHHHHHHhhc-----cccccccCCCHHHHHHHhccCchhHHHHHHHHHHHhHhhhccCCCCCCchhhHHHHHH
Q 000509 135 ---SLEDEIVSKTVLRL-----ASLQSWHSLSYGRFQMELCLNPDLIKKWKRMVKREFKEAMKRGEPFDPSAMLEVKFLR 206 (1456)
Q Consensus 135 ---sle~~~vr~~~~~L-----vsi~iW~~L~~~~~~~~l~~~~~l~K~w~~~~kk~~~~~~~~~~~~~~~~~~er~~l~ 206 (1456)
|+|.++++.+...| ||+++|+.|.+.++..++.+-+..++.|+.-+|+.+... ....++|.++.
T Consensus 441 ~f~sie~ei~~~~~~~l~~~~~vs~~~W~~l~~~r~~f~v~eV~~p~ige~~p~kv~ad~~--------~~~~~eRh~~~ 512 (1320)
T KOG1806|consen 441 SFYSIEAEILNFVERYLRLSGKVAFKGWARLAFPRNDFKVTEVAPPNIGENLPQKVTADVT--------LSRPGERHSIL 512 (1320)
T ss_pred HHHHHHHHHHHHHHHHhhhccchhhhhhhhccchhhhheeeecCCcchhhhhhhhhhhhcc--------ccCcchHHHHH
Confidence 99999999999999 999999999999888889999999999999988854332 23457999999
Q ss_pred HHHHHHHH-----HHhhhhhhcccCCCCCCccccccccCCCCchhhhHHHHHHHHHHHHhhccCchhhHhHHhhhcceee
Q 000509 207 NFIEEFLE-----VLENEVFVQRHHVNNEDDHADANSFLQPNDACVLYCERFMEFLIDLLSQLPTRRYLRPLVADLAIVA 281 (1456)
Q Consensus 207 ~l~~~F~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ycerflelliDL~sqlpTRR~~~~ll~d~~~l~ 281 (1456)
+++.+|+. ++.. +|-+..-.++...+. ..+..+...++|||||.+|.|||+|-+|||||||++|+++| .
T Consensus 513 nli~~f~k~~~~~Li~i--~P~e~~~~~~~~~~~--~eg~vp~~~v~yCErf~~f~idlesildtrRffnvvLd~~h--~ 586 (1320)
T KOG1806|consen 513 NLIENFKKHDVLFLIYI--RPMEPKGLEGNALDP--LEGRVPLTYVRYCERFGMFDIDLESILDTRRFFNVVLDPFH--Y 586 (1320)
T ss_pred HHHHHhhhcCeeEEEEe--ccCcccCcccccccc--cccccCcccchhhhhhhhhhhhhhhccCCcceEEEecchHH--H
Confidence 99999999 6654 563332222222222 25667778999999999999999999999999999999999 9
Q ss_pred eecccccccccccchHHHHHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHhhccccccCh
Q 000509 282 KCHLSTLYRHEKGKLFAQLVDLLQFYEKFEINDHVGKQLTDDEVLQSHYDRFQSFQLLAFKKIPKLQELALANIGSIHKR 361 (1456)
Q Consensus 282 ~~~ls~l~~~~~~~lf~~l~~~l~~y~~f~idd~tG~~l~~~~~~~~h~~~~~~lQ~~~f~~f~~l~~~~l~~~~~i~~~ 361 (1456)
+|-||+|.+.++|.||.|+.-+| .+ -+|+...+..+...|+......|+.-|-|+..|.-.+++++.-.+.+
T Consensus 587 ~~lLs~li~~~ag~lf~qF~~~l------~~--~~~~n~~~~~l~~l~~l~n~~~~~p~wl~~~~Lg~g~pS~~~~~n~~ 658 (1320)
T KOG1806|consen 587 HHLLSGLIEYGAGDLFFQFNLLL------RR--KPEENNFKAILEIIRSLMNRACEVPKWLHDLFLGYGTPSIAHYPNMP 658 (1320)
T ss_pred HHHhhHHhhcCchhhhhhhhhee------ee--ccCcchhHhHHHHHHHHHHhhhccchhhhccccccCCcchhhccCch
Confidence 99999999999999999885555 44 78888899999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCHhhHhhccccceeeecCCCCCCCCHHHHHHHHHHHhhccccHHHHhhcCCCCCccccccccCCCccccc
Q 000509 362 ADLSKRLSVLSLKELQDLVCCKLKLLSSKDPWLDSYDFLVEVIVSFFEKQQSQKEAINALPLYPNEQIMWDESLVPSINY 441 (1456)
Q Consensus 362 ~~l~~~l~~l~~~~l~~l~~~~l~l~~~~~~~~~~~~~l~e~l~~~~~~~~~~~~~~~~~~l~ptE~~l~~~~~~~~~~y 441 (1456)
..++-+. .+-.-+.+| +..+..++.+...+ .+-+. +.+++.++.+.++++|+| +...|
T Consensus 659 ~~~~~~~--~~f~~~~ql-~~~f~~~~v~~v~~--~~al~--------~~k~~~~~nki~~~~~ae---------~~~~~ 716 (1320)
T KOG1806|consen 659 NLSIYAD--DTFLTVEHL-QSSFPNCNVSSNLS--TEALQ--------IKKFYTDQNKISADVTAE---------VPALI 716 (1320)
T ss_pred hhHHHHH--HhhhhHHHH-HHhccCCCccccCc--cHHHH--------HHHhhhhccccCcccccc---------chhhc
Confidence 8888777 555667777 77777766543322 11111 113778888899999999 77788
Q ss_pred CCcccccCCccccccCChHHHHHHhHHHHHHHHHHHHHHhHHHHhhhcccccCCCCceeecccccccccCCceeEEEecC
Q 000509 442 SGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEAVPHLLAYINNEGEAAFRGWSRMAVPIKEFKITEVKQ 521 (1456)
Q Consensus 442 ~~~~~l~lpkLnlQyL~~~Dyl~R~~~l~r~e~~~~ir~die~~i~rl~p~~~~~~~~~f~g~srma~pi~~~~i~~v~~ 521 (1456)
++..|+|.|+|++|+ +.+||+.|+++++++++.|.++++++++..++-||.+..+...|.||.+|+.|+..+..+++++
T Consensus 717 v~~~~lp~~~py~y~-p~~n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyhn~p~qrTlivthsnqa 795 (1320)
T KOG1806|consen 717 VEPFTLPSNGPYPYN-PKKNQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYHNSPNQRTLIVTHSNQA 795 (1320)
T ss_pred cCccccCCCCCCCcC-cccchhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhhhhhhhhhcCCCcceEEEEecccc
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCceeEEEEEEEccccchhHHHHhhhcCCCCEEEEEEeeCCCCCCchhhhhcCCCccccCcceeeeeeEEEEEc
Q 000509 522 PNIGEVKPSSVTAAITFSISSYKAHVRSEWNALKEHDVLFLLSIRPSFEPLSAEEAAKASVPQKLGLQCVRGCEIIEIRD 601 (1456)
Q Consensus 522 p~~g~~~p~~V~a~i~~~l~~~~~~~r~ew~~lr~~dv~fL~~v~~~~~~~~~~~~~~~~~~~~~gi~~vr~~ev~~~~d 601 (1456)
|+.|..+|..++++.. .|.+ ..+...||+..|++|++++|++.++.. +.....-..-.....|...|+||++..+++
T Consensus 796 ln~lfeKi~~~d~d~r-hLlr-lg~ge~eletd~dfsrygrvn~~l~~r-~~ll~ev~rla~sl~~pgdv~ytcetagyf 872 (1320)
T KOG1806|consen 796 LNQLFEKIMALDVDER-HLLR-LGHGEEELETDKDFSRYGRVNYVLSRR-LELLREVERLAKSLQAPGDVDYTCETAGYF 872 (1320)
T ss_pred hhHHHHHHHhcccchh-hHHH-hcccHHhhhcccchhheeeEeeeeccc-hHHHHHHHHhhhhhcCccccccccchhhhh
Confidence 9999999999999999 7663 457899999999999999999987765 222211122235678899999999999999
Q ss_pred CCCCccccccccccCCCCCC-CCCCceEEEEEcchhhhhhhHHHHhhcCCccccccceEEEecCccccchHHHHHHHHHH
Q 000509 602 EDGTLMNDFTGRIKRDEWKP-PKGELRTVTVALDTAQYHMDVTDIAEKGAEDAYGTFNVLMRRKPKENNFKAILESIRDL 680 (1456)
Q Consensus 602 ~~g~~~~~~~~~~~~~~~~~-~~~~~r~~~v~lD~~qy~~d~~~~~~~~~~d~y~~fN~~vrr~~~ennfk~vl~~i~~l 680 (1456)
-+|.++++|.. ..+ .. ..+...+++|..+|--|++-.+.+. .++|++||..+++++++|+|++|+++|+.|
T Consensus 873 ~~~~V~~~wee------~l~~v~-~~~~~~~~~~~~~~fpf~~~f~d~p-~~vfeg~n~~~d~~~a~~cf~hl~~ifqqL 944 (1320)
T KOG1806|consen 873 FLAYVKRRWEE------YLAKVD-KGCDKDSVDIVSNRFPFHSYFGDKP-KPPFEGYNKENDMDYATGCFRHLEYIFQQL 944 (1320)
T ss_pred hhhHHHhhhHH------HHHHhc-cCCCchhhhhHhhhCcchhhhhcCC-CccccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 99999998643 222 22 4578889999999999998777555 689999999999999999999999999999
Q ss_pred hhcccCCChhhHHHhhccCCCCcccccCCCCcccccccccccCChhhhhhhcCCCeEEeeCCCCCCCCCCCCCeeEecCc
Q 000509 681 MNEYCIVPDWLHNIFLGYGNPSAAQWTNMPDFLEVVDFKDTFIDTAHLEECFSDYEVSFVHPDGTENLDPRPPFRIRLPR 760 (1456)
Q Consensus 681 ~~~~~~~p~Wl~difLGygdp~~a~y~~~~~~~~~~~~~dtf~~~~hl~~s~~~~~v~~~~~~~~~~~~~~~pf~~~~~~ 760 (1456)
++..|..|-|+++.-+|||+|.-|--..| ++.|+-.
T Consensus 945 ee~rafellr~~~dr~~Yll~kqakiiam--------------tcthaal------------------------------ 980 (1320)
T KOG1806|consen 945 EEFRAFELLRSGEDRELYLLVKQAKIIAM--------------TCTHAAL------------------------------ 980 (1320)
T ss_pred HhcccccccccchhHhhccCcccceeeec--------------ccCChhh------------------------------
Confidence 99999999999999999998843332221 1333200
Q ss_pred cccCccCCCCCCCccCCcccccccccccCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHhccCCCcEEEE
Q 000509 761 TLKGTSRALPGNKKLTSDSMQVVNMVDASDGKDQLIVEAYTPPDPGPYPQDQPRQNSVRFTPTQVGAIISGIQPGLTMVV 840 (1456)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~p~p~~~p~~n~v~Ln~sQ~eAI~sal~~gltLI~ 840 (1456)
|+. + --...+.+.+|.-.+.++++...+..+.+..||.|..|+...+..+.+..+
T Consensus 981 ------------kr~--------e-----l~~lgf~ydnl~mEesaqile~etfiplLlq~p~dg~~rlkr~iligdhhq 1035 (1320)
T KOG1806|consen 981 ------------RRG--------D-----LVKLGFKYDNLLMEESAQILEIETFIPLLLQNPQDGHNRLKRWILIGDHHQ 1035 (1320)
T ss_pred ------------Chh--------h-----HhhhceeechhhhhhccCCcccccccHHHhcCCcchhhHhhheeecccccc
Confidence 000 0 011345666666677888888888889999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCCcccEEEccCcccccccccchhhhhHHHHHH
Q 000509 841 GPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYLLRLGQGEQELATDLDFSRQGRVNAML 920 (1456)
Q Consensus 841 GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~e~~llRlG~~e~~l~~~~~~sr~gRv~~~l 920 (1456)
||||+|||.+..+...+.++..+..|++|.++++.|..++.++|+++.....++++.+++.+.++...+....+++++-+
T Consensus 1036 lPPv~~n~afqkysnm~qslf~r~vRl~ip~i~lnaqgrar~sI~~Ly~wry~lLg~l~~v~~lp~f~~aNagf~~~~ql 1115 (1320)
T KOG1806|consen 1036 LPPVVKNQAFQKYSNMEQSLFTRLVRLGVPIIDLNAQGRARASIASLYNWRYPLLGNLPHVSPLPRFQYANAGFAYEFQF 1115 (1320)
T ss_pred cCCcccchHHHHHhcchhhhhhcceecccceecchhhhhHHHHHHHHHHhhhcccccCcCCccchhhhccccCceeeEEE
Confidence 99999999999999998888888999999999999999999999999999999999999999999888888888888888
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccccccccchhhhHhhhHHHHHHHHHHhhccC------CCCcccccccchhhhhhcCCC
Q 000509 921 VRRLELLSEVERLARSLQLPEDVGYTCETAGYFWLLHVYSRWEQFLAACADNE------GKPTFVRDRFPFKEFFSNTPQ 994 (1456)
Q Consensus 921 ~~r~~lL~ev~kLa~~l~~~~~~~~sceta~~f~~~~v~~~w~~fl~~l~~~~------~~~~~i~~~fpf~~~f~~~p~ 994 (1456)
-.+.++....+..-...+..+.-.+.|..|+|++..-+--.|+++.-...-.. +-...-...+||..+++..+.
T Consensus 1116 inv~Df~g~gEt~p~p~fyQnlgeaey~vAly~YMr~Lgypa~Kisilttyngq~~lirdii~rrc~~nPfig~pAkv~t 1195 (1320)
T KOG1806|consen 1116 INVPDFKGSGETEPSPGFYQNLGEAEYAVALFQYMRLLGYPANKISILTTYNGQKSLIRDIINRRCSHNPFIGQPAKVTT 1195 (1320)
T ss_pred ecchhhccccccCCCcccccCCchhhhHHHHHHHHHHhCCchhHeeEEEeecchHHHHHHHHHHhccCCCccCCcccCCc
Confidence 78888888888888888888888999999999998877777877642110000 001122356799999988887
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcEEEEcchhHhhhhhHHhhcCCCCCEE
Q 000509 995 PIFTGDSFEKDMRAAKGCFRHLQTLFQELEECRAFELLKSTADRANYLMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNL 1074 (1456)
Q Consensus 995 ~l~~~~s~e~~l~~a~~~~~~i~~if~eL~e~r~fElLr~~~~r~~~lllk~a~IIa~T~t~aa~~~~~l~~lg~kfD~V 1074 (1456)
+.+.+. ...++..+.-........+.+++++..+....+......+.....++++++||++++..+....-+++.
T Consensus 1196 vdk~qg-qqndfiIlslv~tr~~gh~rdvrrlvva~srarlglyv~~r~~lf~~c~eLtp~~~~l~k~p~~lll~~---- 1270 (1320)
T KOG1806|consen 1196 VDKFQG-QQNDFIILSLVRTREVGHLRDVRRLVVAMSRARLGLYVLCRRSLFRSCRELTPAFNELEKRPDKLLLTP---- 1270 (1320)
T ss_pred cccccc-cccceEEeeehhhhhhhhhccHHHHHHHHHHhhccchhHHHHHHHHHHHhccHHHHHHhhCcchhcccc----
Confidence 766544 444544455555666777888888888888888888888888889999999999998766544433322
Q ss_pred EEecCCCCChHHHHHHHHhCCCCCCCceecchhhhhhcCCcccHHHHHHH
Q 000509 1075 LMEESAQILEIETFIPMLLNDRRMLPPVVKNMAFQKYSHMDQSLFTRFVR 1124 (1456)
Q Consensus 1075 IIDEAsQitE~EtlIPLll~Dh~QLpPvV~s~~~~~~~~l~qSLFeRL~~ 1124 (1456)
||+..... ..||.|++|+|++.....++.++++++.+..+
T Consensus 1271 --~ei~pt~r--------~~~~~~~~~~I~nm~~m~~~v~e~~~~~~~t~ 1310 (1320)
T KOG1806|consen 1271 --GEIYPTSR--------KIGSSVETFEIENLLHMANFVVEMYMKRLQTN 1310 (1320)
T ss_pred --Cccccccc--------CCCcccccHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44332221 33999999999999999888999999988754
No 3
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=100.00 E-value=2.9e-64 Score=590.56 Aligned_cols=396 Identities=29% Similarity=0.431 Sum_probs=312.9
Q ss_pred CCCCCCCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCCcc
Q 000509 813 PRQNSVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPAR 892 (1456)
Q Consensus 813 p~~n~v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~e~ 892 (1456)
...+.-.||.+|..||.+.++.++++||||||||||.|.+.||.+|... ...+|||||+||.|+|+|.+||.+.++
T Consensus 404 s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~-~~~~VLvcApSNiAVDqLaeKIh~tgL--- 479 (935)
T KOG1802|consen 404 SVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-HAGPVLVCAPSNIAVDQLAEKIHKTGL--- 479 (935)
T ss_pred cCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh-cCCceEEEcccchhHHHHHHHHHhcCc---
Confidence 3334557899999999999999999999999999999999999999987 478999999999999999999999874
Q ss_pred cEEEccCcccccc-cccch-hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccchhhhHhhhHHHHHHHHHHhh
Q 000509 893 YLLRLGQGEQELA-TDLDF-SRQGRVNAMLVRRLELLSEVERLARSLQLPEDVGYTCETAGYFWLLHVYSRWEQFLAACA 970 (1456)
Q Consensus 893 ~llRlG~~e~~l~-~~~~~-sr~gRv~~~l~~r~~lL~ev~kLa~~l~~~~~~~~sceta~~f~~~~v~~~w~~fl~~l~ 970 (1456)
+++|+-...++.. +...| +.+..++.+-. .+++++++. .
T Consensus 480 KVvRl~aksRE~~~S~vs~L~lh~~~~~~~~------pELq~l~kl---------------------------------k 520 (935)
T KOG1802|consen 480 KVVRLCAKSREDIESDVSFLSLHEQLRNMDK------PELQKLLKL---------------------------------K 520 (935)
T ss_pred eEeeeehhhhhhccCCccHHHHHHHHhccCc------HHHHHHHhh---------------------------------h
Confidence 5999987544321 11111 00000000000 011111100 0
Q ss_pred ccCCCCcccccccchhhhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcEE
Q 000509 971 DNEGKPTFVRDRFPFKEFFSNTPQPIFTGDSFEKDMRAAKGCFRHLQTLFQELEECRAFELLKSTADRANYLMTKQAKIV 1050 (1456)
Q Consensus 971 ~~~~~~~~i~~~fpf~~~f~~~p~~l~~~~s~e~~l~~a~~~~~~i~~if~eL~e~r~fElLr~~~~r~~~lllk~a~II 1050 (1456)
.+.. . .+..++ ..|..++ .+....++.+|+||
T Consensus 521 de~g---e---------------------lS~sD~---------------------~k~~~lk---~~~e~ell~~AdVI 552 (935)
T KOG1802|consen 521 DEGG---E---------------------LSSSDE---------------------KKYRKLK---RAAEKELLNQADVI 552 (935)
T ss_pred hhcc---c---------------------ccchhh---------------------HHHHHHH---HHHHHHHHhhcCEE
Confidence 0000 0 000000 1111122 22233478999999
Q ss_pred EEcchhHhhhhhHHhhcCCCCCEEEEecCCCCChHHHHHHHHhC--------CCCCCCceecchhhhhhcCCcccHHHHH
Q 000509 1051 AMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPMLLN--------DRRMLPPVVKNMAFQKYSHMDQSLFTRF 1122 (1456)
Q Consensus 1051 a~T~t~aa~~~~~l~~lg~kfD~VIIDEAsQitE~EtlIPLll~--------Dh~QLpPvV~s~~~~~~~~l~qSLFeRL 1122 (1456)
+|||.+|+.++.. .++|..||||||.|.+||+++|||.++ ||+||.|++....... +++.||||+||
T Consensus 553 ccTcv~Agd~rl~----~~kfr~VLiDEaTQatEpe~LiPlvlG~kq~VlVGDh~QLgpvi~~kK~a~-Agl~qsLferl 627 (935)
T KOG1802|consen 553 CCTCVGAGDRRLS----KFKFRTVLIDEATQATEPECLIPLVLGAKQLVLVGDHKQLGPVIMCKKAAT-AGLSQSLFERL 627 (935)
T ss_pred EEecccccchhhc----cccccEEEEecccccCCcchhhhhhhcceeEEEeccccccCceeeeHHHHH-hHHHHHHHHHH
Confidence 9999999987643 258999999999999999999999988 9999999998877665 68999999999
Q ss_pred HHcCCCeeeccccccCchhHHHHHHHHhccCC---------------CCCc--------eeecCCCCCCCccCCCCCccC
Q 000509 1123 VRLGIPYIELNAQGRARPSIAQLYNWRYRDLG---------------DLPF--------LVDVPDYNGRGESAPSPWFYQ 1179 (1456)
Q Consensus 1123 ~~~g~p~i~L~~QYR~~PsIa~~~n~~yy~l~---------------dlp~--------fidV~~~~g~~e~~~~~~S~~ 1179 (1456)
+..|...++|.+||||||.|++|.+..||++. ++|. |..+ .|..+...+++|+-
T Consensus 628 i~lg~~P~~L~vQYRmhP~lSefpsn~fY~G~LqnGVT~~~R~~~g~~~pwp~p~~pl~fy~~---~g~eeisasGtSf~ 704 (935)
T KOG1802|consen 628 ISLGIKPIRLQVQYRMHPALSEFPSNMFYEGELQNGVTEIERSPLGVDFPWPQPDKPLFFYVC---YGQEEISASGTSFL 704 (935)
T ss_pred HhccCCceEEEEeeeeChhhhhcchhhhccchhhcCcchhhhccCCCCCCCCCCCCccceEEe---ccceeeecccccee
Confidence 99999999999999999999999999999821 1221 3332 37788888999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCCCEEEecCCHHHHHHHHHHHHhcCCCCCCCCCCceeecccCCCCccCCEEEEEecccC
Q 000509 1180 NEGEAEYVVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRTR 1259 (1456)
Q Consensus 1180 N~~EAe~vv~iv~~L~~~Gy~~~~IgILTpY~aQ~~lIr~~L~~r~~~~~~~g~~v~V~TVD~fQG~E~DvVIlSlVRs~ 1259 (1456)
|..||..+..|++.|+..|++++.|||||||.+|+..|-+.+...+..++-+-..|.|.|||.|||+|+|+||+||||++
T Consensus 705 Nr~Ea~~~ekii~~l~~~gv~~~qIGVITpYegQr~~i~~ym~~~gsl~~~ly~~veVasVDaFQGrEKdfIIlSCVRsn 784 (935)
T KOG1802|consen 705 NRTEAANCEKIITKLLKSGVKPSQIGVITPYEGQRSYIVNYMQTNGSLHKDLYKEVEVASVDAFQGREKDFIILSCVRSN 784 (935)
T ss_pred cHHHHHHHHHHHHHHHHcCCCHHHeeeecccchhHHHHHHHHHhcCccccchhheeEEEeeccccCcccceEEEEEeecc
Confidence 99999999999999999999999999999999999999999987766555444457999999999999999999999998
Q ss_pred ---CccccccchhhHHHHhhhhccEEEEechhhhhhhccchHHHHHHHcCccccc
Q 000509 1260 ---FVGHLRDVRRLVVAMSRARLGLYVFCRRSLFEQCYELQPTFRLLLQRPDKLA 1311 (1456)
Q Consensus 1260 ---~~GfL~d~rRLNVAlSRAR~~LiIvGn~~~l~~~~~~~~~~~~Ll~~~~~l~ 1311 (1456)
++||++|+||||||+||||+||+||||+..|.+. ++|..++.++....
T Consensus 785 ~~qgIGFl~d~RRlNVaLTRaK~glvivGN~~~L~k~----~LW~~li~h~~eke 835 (935)
T KOG1802|consen 785 EHQGIGFLNDPRRLNVALTRAKYGLVIVGNPKVLRKH----PLWGHLITHYKEKE 835 (935)
T ss_pred cccccccccCchhhhhhhhhcccceEEecCHHHhhhc----hHHHHHHHHhhccc
Confidence 6999999999999999999999999999999885 99999999887544
No 4
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-59 Score=555.91 Aligned_cols=406 Identities=26% Similarity=0.357 Sum_probs=295.4
Q ss_pred CCCCHHHHHHHHhccCC-CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCCcccEEE
Q 000509 818 VRFTPTQVGAIISGIQP-GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYLLR 896 (1456)
Q Consensus 818 v~Ln~sQ~eAI~sal~~-gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~e~~llR 896 (1456)
..||.+|..||..++.. .+.+|+||||||||+|++.||..+++. ++|||||||||.|||++.+||.-.+. .++|
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~--~k~VLVcaPSn~AVdNiverl~~~~~---~l~R 258 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ--KKRVLVCAPSNVAVDNIVERLTHLKL---NLVR 258 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc--CCeEEEEcCchHHHHHHHHHhccccc---chhh
Confidence 56899999999999865 899999999999999999999999998 89999999999999999999985554 4999
Q ss_pred ccCcccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccchhhhHhhhHHHHHHHHHHhhccCCCC
Q 000509 897 LGQGEQELATDLDFSRQGRVNAMLVRRLELLSEVERLARSLQLPEDVGYTCETAGYFWLLHVYSRWEQFLAACADNEGKP 976 (1456)
Q Consensus 897 lG~~e~~l~~~~~~sr~gRv~~~l~~r~~lL~ev~kLa~~l~~~~~~~~sceta~~f~~~~v~~~w~~fl~~l~~~~~~~ 976 (1456)
+|+..+.++...+.+...-++ +-..+. ..... .+-.+.+
T Consensus 259 ~g~paRl~~~~~~~sld~~~~----------------------------t~d~~~---~~~~~---sk~~d~~------- 297 (649)
T KOG1803|consen 259 VGHPARLLESVADHSLDLLSN----------------------------TKDNSQ---NAKDI---SKDIDIL------- 297 (649)
T ss_pred cCchhhhhhhhhhhHHHHHHh----------------------------cCchhh---hhhhh---HHHHHHH-------
Confidence 999755443332221100000 000000 00000 0000000
Q ss_pred cccccccchhhhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcEEEEcchh
Q 000509 977 TFVRDRFPFKEFFSNTPQPIFTGDSFEKDMRAAKGCFRHLQTLFQELEECRAFELLKSTADRANYLMTKQAKIVAMTCTH 1056 (1456)
Q Consensus 977 ~~i~~~fpf~~~f~~~p~~l~~~~s~e~~l~~a~~~~~~i~~if~eL~e~r~fElLr~~~~r~~~lllk~a~IIa~T~t~ 1056 (1456)
|.. ....++.... +.+..++..+++ + +++...+.-..++..++||++|..+
T Consensus 298 ------------~~~--------~~~tk~~~~~-------~~~~~~i~~lrk-d-l~kre~~~v~eii~n~~VVfaTl~g 348 (649)
T KOG1803|consen 298 ------------FQK--------NTKTKNDKLR-------KGIRKEIKLLRK-D-LRKRERKTVKEIISNSRVVFATLGG 348 (649)
T ss_pred ------------hhh--------hhcccchHHH-------HHHHHHHHHHHH-H-HHHHHHHHHHHhhcccceEEEeccc
Confidence 000 0000011111 222222222221 1 1111222233467899999999998
Q ss_pred HhhhhhHHhhcCCCCCEEEEecCCCCChHHHHHHHHhC-------CCCCCCceecchhhhhhcCCcccHHHHHHHc--CC
Q 000509 1057 AALKRKDFLQLGFKYDNLLMEESAQILEIETFIPMLLN-------DRRMLPPVVKNMAFQKYSHMDQSLFTRFVRL--GI 1127 (1456)
Q Consensus 1057 aa~~~~~l~~lg~kfD~VIIDEAsQitE~EtlIPLll~-------Dh~QLpPvV~s~~~~~~~~l~qSLFeRL~~~--g~ 1127 (1456)
|..... -++.||+||||||+|++|+++|||++.+ ||+||||++.+..... .++..|+|+|+... +.
T Consensus 349 a~~~~~----~~~~fD~vIIDEaaQamE~~cWipvlk~kk~ILaGDp~QLpP~v~S~~a~~-~gl~~Sl~erlae~~~~~ 423 (649)
T KOG1803|consen 349 ALDRLL----RKRTFDLVIIDEAAQAMEPQCWIPVLKGKKFILAGDPKQLPPTVLSDKAKR-GGLQVSLLERLAEKFGNL 423 (649)
T ss_pred hhhhhh----cccCCCEEEEehhhhhccchhhhHHhcCCceEEeCCcccCCcccccchhhh-ccchhhHHHHHHHHcccc
Confidence 887322 1357999999999999999999999876 9999999999987764 68999999999975 35
Q ss_pred CeeeccccccCchhHHHHHHHHhcc-------------CCCCCc------------eeecCCCCCCCccCCCC--CccCC
Q 000509 1128 PYIELNAQGRARPSIAQLYNWRYRD-------------LGDLPF------------LVDVPDYNGRGESAPSP--WFYQN 1180 (1456)
Q Consensus 1128 p~i~L~~QYR~~PsIa~~~n~~yy~-------------l~dlp~------------fidV~~~~g~~e~~~~~--~S~~N 1180 (1456)
-.++|++||||+..|+.|.|..||+ +.++|. |+|+.+........-.. .|++|
T Consensus 424 ~~~~Ln~QYRMn~~Im~wsn~~fY~~qlka~~~v~~~lL~dl~~v~~t~~t~~PlvlvDT~~~~~~e~~~e~~~~~S~~N 503 (649)
T KOG1803|consen 424 SKILLNEQYRMNEKIMNWSNEVFYNGQLKAASSVASHLLRDLPNVLATESTKSPLVLVDTQGEKDEEKRGEEEELGSKYN 503 (649)
T ss_pred hhhhhhhhhcchHHHhhCcHhhhcCCeeeecchhhhhhhhcccCCCCccccCCcEEEEecccchhhhhccchhhccccCC
Confidence 6789999999999999999999997 233333 77777544432222222 48999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCEEEecCCHHHHHHHHHHHHhcCCCCCCCCCCceeecccCCCCccCCEEEEEecccC-
Q 000509 1181 EGEAEYVVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRTR- 1259 (1456)
Q Consensus 1181 ~~EAe~vv~iv~~L~~~Gy~~~~IgILTpY~aQ~~lIr~~L~~r~~~~~~~g~~v~V~TVD~fQG~E~DvVIlSlVRs~- 1259 (1456)
.+||+.+...++.|+..|+++++|||||||++|+.++|...... ...+.|+|||+|||+|+|+||+|+||++
T Consensus 504 ~gEa~Iv~~Hv~~L~~~gV~p~dIaVIsPY~aQv~llR~~~~~~-------~~~veV~TVD~fQGrEkdvVIfsmVRSN~ 576 (649)
T KOG1803|consen 504 EGEAKIVMEHVKRLLEAGVQPSDIAVISPYNAQVSLLREEDEED-------FRDVEVGTVDGFQGREKDVVIFSLVRSND 576 (649)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHeEEeccchHHHHHHhhccccc-------CccceeecccccccceeeEEEEEEEeecC
Confidence 99999999999999999999999999999999999999332221 2248999999999999999999999998
Q ss_pred --CccccccchhhHHHHhhhhccEEEEechhhhhhhccchHHHHHHHcCccccccc
Q 000509 1260 --FVGHLRDVRRLVVAMSRARLGLYVFCRRSLFEQCYELQPTFRLLLQRPDKLALT 1313 (1456)
Q Consensus 1260 --~~GfL~d~rRLNVAlSRAR~~LiIvGn~~~l~~~~~~~~~~~~Ll~~~~~l~l~ 1313 (1456)
.+||+.+.||||||+||||.++.||||..++.. ....+..+..+.....++
T Consensus 577 k~evGFL~e~RRLNVAiTRaRRh~~vIgds~tl~~---~~~~l~k~~~f~~~~~~~ 629 (649)
T KOG1803|consen 577 KGEVGFLGETRRLNVAITRARRHFVVIGDSRTLKE---GNEFLKKLVEFLEENKLV 629 (649)
T ss_pred cccccccCCcceeeEEEEeccceEEEEcCcHHHHh---hHHHHHHHHHHhhhccee
Confidence 699999999999999999999999999999983 235555555555543333
No 5
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=100.00 E-value=5.3e-56 Score=557.20 Aligned_cols=429 Identities=24% Similarity=0.367 Sum_probs=301.7
Q ss_pred CCCHHHHHHHHhccCC-CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCCcccEEEc
Q 000509 819 RFTPTQVGAIISGIQP-GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYLLRL 897 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~~-gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~e~~llRl 897 (1456)
.||++|.+||..++.. ++++|+||||||||+|++.++..++.. +.+||+||+||.|+|+++++|.+.++ .++|+
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~--g~~VLv~a~sn~Avd~l~e~l~~~~~---~vvRl 231 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR--GLRVLVTAPSNIAVDNLLERLALCDQ---KIVRL 231 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEEcCcHHHHHHHHHHHHhCCC---cEEEe
Confidence 5899999999999865 899999999999999999999999887 67999999999999999999998643 59999
Q ss_pred cCcccccccccchhhhhHHHHH--HHHHHHHHHHHHHHHHhcCCCCccccccccchhhhHhhhHHHHHHHHHHhhccCCC
Q 000509 898 GQGEQELATDLDFSRQGRVNAM--LVRRLELLSEVERLARSLQLPEDVGYTCETAGYFWLLHVYSRWEQFLAACADNEGK 975 (1456)
Q Consensus 898 G~~e~~l~~~~~~sr~gRv~~~--l~~r~~lL~ev~kLa~~l~~~~~~~~sceta~~f~~~~v~~~w~~fl~~l~~~~~~ 975 (1456)
|+..+.......++....+..- ...-.++..+++++.+...-. + +-.+.|+..+...
T Consensus 232 g~~~r~~~~~~~~sl~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~---------~~~~~~~~~~~~~------ 290 (637)
T TIGR00376 232 GHPARLLKSNKQHSLDYLIENHPKYQIVADIREKIDELIEERNKK------L---------KPSPQKRRGLSDI------ 290 (637)
T ss_pred CCchhcchhHHhccHHHHHhcChhHHHHHHHHHHHHHHHHHHHhh------c---------cchHhHhhccchH------
Confidence 9987654443333322222100 000011112222222211000 0 0000111100000
Q ss_pred CcccccccchhhhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcEEEEcch
Q 000509 976 PTFVRDRFPFKEFFSNTPQPIFTGDSFEKDMRAAKGCFRHLQTLFQELEECRAFELLKSTADRANYLMTKQAKIVAMTCT 1055 (1456)
Q Consensus 976 ~~~i~~~fpf~~~f~~~p~~l~~~~s~e~~l~~a~~~~~~i~~if~eL~e~r~fElLr~~~~r~~~lllk~a~IIa~T~t 1055 (1456)
..++ .-+............. ..+.....+...+..++..+ +....++...++..|+++++|+.
T Consensus 291 -~~l~------~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~il~~a~v~~st~~ 353 (637)
T TIGR00376 291 -KILR------KALKKREARGIESLKI-ASMAEWIETNKSIDRLLKLL---------PEIEERIENEILAESDVVQSTNS 353 (637)
T ss_pred -HHHH------HHHhhhhhcccchhhh-HHHHHHHHhhhhhHHHHHHH---------HHHHHHHHHHHHhhCCEEEeccC
Confidence 0000 0000000000000000 00111111222223322222 22233344558899999988876
Q ss_pred hHhhhhhHHhhcCCCCCEEEEecCCCCChHHHHHHHHhC-------CCCCCCceecchhhhhhcCCcccHHHHHHHc-CC
Q 000509 1056 HAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPMLLN-------DRRMLPPVVKNMAFQKYSHMDQSLFTRFVRL-GI 1127 (1456)
Q Consensus 1056 ~aa~~~~~l~~lg~kfD~VIIDEAsQitE~EtlIPLll~-------Dh~QLpPvV~s~~~~~~~~l~qSLFeRL~~~-g~ 1127 (1456)
+... .+.+||+||||||+|++|+++|+|+..+ ||+||||++.+.. ..+++.|+|+|+... +.
T Consensus 354 ~~~l-------~~~~Fd~vIIDEAsQ~~ep~~lipl~~~~~~vLvGD~~QLpP~v~s~~---~~~l~~SlferL~~~~~~ 423 (637)
T TIGR00376 354 SAGL-------KGWEFDVAVIDEASQAMEPSCLIPLLKARKLILAGDHKQLPPTILSHD---AEELELTLFERLIKEYPE 423 (637)
T ss_pred cHhh-------ccCCCCEEEEECccccchHHHHHHHhhCCeEEEecChhhcCCcccccc---ccccchhHHHHHHHhCCC
Confidence 5432 1358999999999999999999999865 9999999998765 257899999999985 34
Q ss_pred CeeeccccccCchhHHHHHHHHhccC--C-----------CCC----------------c-eeecCCCCCCCccCCCCCc
Q 000509 1128 PYIELNAQGRARPSIAQLYNWRYRDL--G-----------DLP----------------F-LVDVPDYNGRGESAPSPWF 1177 (1456)
Q Consensus 1128 p~i~L~~QYR~~PsIa~~~n~~yy~l--~-----------dlp----------------~-fidV~~~~g~~e~~~~~~S 1177 (1456)
...+|++||||||+|++|+|..||+. . ++| . |+|+.+..+.......+.|
T Consensus 424 ~~~~L~~QYRMh~~I~~f~s~~fY~g~L~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~fidt~g~~~~e~~~~~~~S 503 (637)
T TIGR00376 424 RSRTLNVQYRMNQKIMEFPSREFYNGKLTAHESVANILLRDLPKVEATDSEDDLETEIPLLFIDTSGCELFELKEADSTS 503 (637)
T ss_pred ceeecchhcCCCHHHHhhhHHhhcCCccccCcchhhhhhhhcccccccccccccCCCCCEEEEECCCccccccccCCCCC
Confidence 47899999999999999999999861 1 111 1 7777654432223445678
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCCCCEEEecCCHHHHHHHHHHHHhcCCCCCCCCCCceeecccCCCCccCCEEEEEecc
Q 000509 1178 YQNEGEAEYVVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVR 1257 (1456)
Q Consensus 1178 ~~N~~EAe~vv~iv~~L~~~Gy~~~~IgILTpY~aQ~~lIr~~L~~r~~~~~~~g~~v~V~TVD~fQG~E~DvVIlSlVR 1257 (1456)
+.|..||++|+.+++.|...|+++++|||||||++|+.+|++.|... +.++.|+|||+|||+|+|+||+|+||
T Consensus 504 ~~N~~EA~~V~~~v~~l~~~g~~~~~IgVItPY~aQv~~L~~~l~~~-------~~~i~v~TVd~fQG~E~DvIi~S~vr 576 (637)
T TIGR00376 504 KYNPGEAELVSEIIQALVKMGVPANDIGVITPYDAQVDLLRQLLEHR-------HIDIEVSSVDGFQGREKEVIIISFVR 576 (637)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCcceEEEEcccHHHHHHHHHHHHhh-------CCCeEEccccccCCccccEEEEEEEe
Confidence 99999999999999999999999999999999999999999999754 23589999999999999999999999
Q ss_pred cCC---ccccccchhhHHHHhhhhccEEEEechhhhhhhccchHHHHHHHcCccccc
Q 000509 1258 TRF---VGHLRDVRRLVVAMSRARLGLYVFCRRSLFEQCYELQPTFRLLLQRPDKLA 1311 (1456)
Q Consensus 1258 s~~---~GfL~d~rRLNVAlSRAR~~LiIvGn~~~l~~~~~~~~~~~~Ll~~~~~l~ 1311 (1456)
++. +||+.|.||||||+||||.+||||||...|++. ++|+.|++++....
T Consensus 577 sn~~~~~gFl~d~rRLNVAlTRAK~~LiIvGn~~~l~~~----~~~~~li~~~~~~~ 629 (637)
T TIGR00376 577 SNRKGEVGFLKDLRRLNVALTRARRKLIVIGDSRTLSNH----KFYKRLIEWCKQHG 629 (637)
T ss_pred cCCCCCcccccCcceeeeehhhhhCceEEEECHHHhccC----hHHHHHHHHHHHCC
Confidence 984 899999999999999999999999999999876 78888888887543
No 6
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=100.00 E-value=3.1e-51 Score=487.06 Aligned_cols=260 Identities=32% Similarity=0.469 Sum_probs=223.6
Q ss_pred HHHHHHHhhhccCcEEEEcchhHhhhhhHHhhcCCCCCEEEEecCCCCChHHHHHHHHhC--------CCCCCCceecch
Q 000509 1035 TADRANYLMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPMLLN--------DRRMLPPVVKNM 1106 (1456)
Q Consensus 1035 ~~~r~~~lllk~a~IIa~T~t~aa~~~~~l~~lg~kfD~VIIDEAsQitE~EtlIPLll~--------Dh~QLpPvV~s~ 1106 (1456)
.+.+....+++.+.||+||+|+|+..+..+... .+.+|||+||+.+.|.+++..+.-. ||+||+|.....
T Consensus 687 lrn~~da~llR~a~vigmTTTgaaryr~ilekv--~pkivivEEAAEVlEahiIaal~p~~EhviLIGDHKQLrP~~~vy 764 (1025)
T KOG1807|consen 687 LRNVFDAFLLREADVIGMTTTGAARYRFILEKV--QPKIVIVEEAAEVLEAHIIAALTPHTEHVILIGDHKQLRPFSGVY 764 (1025)
T ss_pred HHHHHHHHHhhccceeeeechhHHHHHHHHHHh--CCcEEEEhhHhHHhhcchhhhhcccceeEEEecchhhcCCCcchh
Confidence 345566679999999999999999999888776 4889999999999998876655433 999999999999
Q ss_pred hhhhhcCCcccHHHHHHHcCCCeeeccccccCchhHHHHHH-HHhccCCCCCceeecCCCC-----------CCCccCCC
Q 000509 1107 AFQKYSHMDQSLFTRFVRLGIPYIELNAQGRARPSIAQLYN-WRYRDLGDLPFLVDVPDYN-----------GRGESAPS 1174 (1456)
Q Consensus 1107 ~~~~~~~l~qSLFeRL~~~g~p~i~L~~QYR~~PsIa~~~n-~~yy~l~dlp~fidV~~~~-----------g~~e~~~~ 1174 (1456)
...+.+++..|+|+||+..|.|+.+|+.||||+|.|+++.. ..|.++.+.++.-..++.+ ...+..+.
T Consensus 765 ~L~q~fnL~iSlFERLVe~glpfsrLn~QhRM~p~IsrllvpsiYddl~d~esvk~yedI~gms~nlfFv~hnspee~~d 844 (1025)
T KOG1807|consen 765 KLPQIFNLSISLFERLVEAGLPFSRLNLQHRMRPCISRLLVPSIYDDLLDSESVKEYEDIRGMSKNLFFVQHNSPEECMD 844 (1025)
T ss_pred hHhHhcchhHHHHHHHHHcCCChhhhhHHhhhchHHHHHhhHHHhhhhhcchhhccccccccccceeeEEecCCcccCcc
Confidence 98888999999999999999999999999999999999998 5565666665511111111 12455666
Q ss_pred CCccCCHHHHHHHHHHHHHHHHhCCCCCCEEEecCCHHHHHHHHHHHHhcCCCCCCCCCCceeecccCCCCccCCEEEEE
Q 000509 1175 PWFYQNEGEAEYVVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLS 1254 (1456)
Q Consensus 1175 ~~S~~N~~EAe~vv~iv~~L~~~Gy~~~~IgILTpY~aQ~~lIr~~L~~r~~~~~~~g~~v~V~TVD~fQG~E~DvVIlS 1254 (1456)
..|+.|..||.++|++..||+.++|.+++|.|||||+||+..|++.+.+. ++..|.|.|||+|||.|+|||++|
T Consensus 845 e~S~~NlhEa~mlv~l~kyli~q~y~psdIviLttY~gQk~ci~rllp~~------~~stv~VatVDsfQGeEndIVLlS 918 (1025)
T KOG1807|consen 845 EMSIGNLHEAGMLVKLTKYLIQQQYKPSDIVILTTYNGQKECIKRLLPQN------YRSTVQVATVDSFQGEENDIVLLS 918 (1025)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhcCCCccceEEEeechhHHHHHHHHhHHH------hcCcceEEEeccccCccccEEEEE
Confidence 79999999999999999999999999999999999999999999999875 445699999999999999999999
Q ss_pred ecccC---CccccccchhhHHHHhhhhccEEEEechhhhhhhccchHHHHHHHc
Q 000509 1255 LVRTR---FVGHLRDVRRLVVAMSRARLGLYVFCRRSLFEQCYELQPTFRLLLQ 1305 (1456)
Q Consensus 1255 lVRs~---~~GfL~d~rRLNVAlSRAR~~LiIvGn~~~l~~~~~~~~~~~~Ll~ 1305 (1456)
+||++ .+|||+..+|++||+||||.|||||||..++..+ .++|..+++
T Consensus 919 LVRsn~~griGFL~~anRvCVALSRAr~glyiiGN~q~la~~---~pLWnkivn 969 (1025)
T KOG1807|consen 919 LVRSNISGRIGFLRQANRVCVALSRARWGLYIIGNVQILADT---PPLWNKIVN 969 (1025)
T ss_pred EEeccCCceeeeeeccchhhhhhhhhhcceEEecceeecccC---chhHHHHHH
Confidence 99997 6999999999999999999999999999998874 355555544
No 7
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=100.00 E-value=5e-52 Score=506.91 Aligned_cols=363 Identities=26% Similarity=0.376 Sum_probs=294.3
Q ss_pred CCCCHHHHHHHHhcc-CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCCcccEEE
Q 000509 818 VRFTPTQVGAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYLLR 896 (1456)
Q Consensus 818 v~Ln~sQ~eAI~sal-~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~e~~llR 896 (1456)
.+||..|++|+..++ ...++||.|-|||||||||+.+|..|+.. +++||++|+||.|||+|+-||...++. ++|
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~--gkkVLLtsyThsAVDNILiKL~~~~i~---~lR 742 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL--GKKVLLTSYTHSAVDNILIKLKGFGIY---ILR 742 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHc--CCeEEEEehhhHHHHHHHHHHhccCcc---eee
Confidence 589999999999888 57899999999999999999999999987 999999999999999999999998876 999
Q ss_pred ccCcccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccchhhhHhhhHHHHHHHHHHhhccCCCC
Q 000509 897 LGQGEQELATDLDFSRQGRVNAMLVRRLELLSEVERLARSLQLPEDVGYTCETAGYFWLLHVYSRWEQFLAACADNEGKP 976 (1456)
Q Consensus 897 lG~~e~~l~~~~~~sr~gRv~~~l~~r~~lL~ev~kLa~~l~~~~~~~~sceta~~f~~~~v~~~w~~fl~~l~~~~~~~ 976 (1456)
+|.++...+....+. . |.
T Consensus 743 LG~~~kih~~v~e~~---------------------------~-------~~---------------------------- 760 (1100)
T KOG1805|consen 743 LGSEEKIHPDVEEFT---------------------------L-------TN---------------------------- 760 (1100)
T ss_pred cCCccccchHHHHHh---------------------------c-------cc----------------------------
Confidence 998744222111110 0 00
Q ss_pred cccccccchhhhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcEEEEcchh
Q 000509 977 TFVRDRFPFKEFFSNTPQPIFTGDSFEKDMRAAKGCFRHLQTLFQELEECRAFELLKSTADRANYLMTKQAKIVAMTCTH 1056 (1456)
Q Consensus 977 ~~i~~~fpf~~~f~~~p~~l~~~~s~e~~l~~a~~~~~~i~~if~eL~e~r~fElLr~~~~r~~~lllk~a~IIa~T~t~ 1056 (1456)
+.+. ..+++ ++ ..+++..||||||.+
T Consensus 761 ----------------------~~s~------------------ks~~~------l~--------~~~~~~~IVa~TClg 786 (1100)
T KOG1805|consen 761 ----------------------ETSE------------------KSYAD------LK--------KFLDQTSIVACTCLG 786 (1100)
T ss_pred ----------------------ccch------------------hhHHH------HH--------HHhCCCcEEEEEccC
Confidence 0000 00000 10 145788999999998
Q ss_pred HhhhhhHHhhcCCCCCEEEEecCCCCChHHHHHHHHhC-------CCCCCCceecchhhhhhcCCcccHHHHHHHc-CCC
Q 000509 1057 AALKRKDFLQLGFKYDNLLMEESAQILEIETFIPMLLN-------DRRMLPPVVKNMAFQKYSHMDQSLFTRFVRL-GIP 1128 (1456)
Q Consensus 1057 aa~~~~~l~~lg~kfD~VIIDEAsQitE~EtlIPLll~-------Dh~QLpPvV~s~~~~~~~~l~qSLFeRL~~~-g~p 1128 (1456)
..- +-+.. .+||++|||||+|+..|-++.||..+ ||.||||.|.+...+. .+++.|||+||... ...
T Consensus 787 i~~--plf~~--R~FD~cIiDEASQI~lP~~LgPL~~s~kFVLVGDh~QLpPLV~s~ear~-~Gl~~SLFkrL~e~hpea 861 (1100)
T KOG1805|consen 787 INH--PLFVN--RQFDYCIIDEASQILLPLCLGPLSFSNKFVLVGDHYQLPPLVRSSEARQ-EGLSESLFKRLSEKHPEA 861 (1100)
T ss_pred CCc--hhhhc--cccCEEEEccccccccchhhhhhhhcceEEEecccccCCccccchhhhh-cCcchHHHHHHhhhCchH
Confidence 872 32322 36999999999999999999999887 9999999999998876 69999999999974 345
Q ss_pred eeeccccccCchhHHHHHHHHhccCCCCCc-----------------------------------------eeecCCCCC
Q 000509 1129 YIELNAQGRARPSIAQLYNWRYRDLGDLPF-----------------------------------------LVDVPDYNG 1167 (1456)
Q Consensus 1129 ~i~L~~QYR~~PsIa~~~n~~yy~l~dlp~-----------------------------------------fidV~~~~g 1167 (1456)
+..|+.||||...|+.+.|..+|+ ++|-+ |+++.+..+
T Consensus 862 V~~Lt~QYRMn~~I~~LSN~L~Yg-~~L~Cgs~eVs~~~~~~~~~~~~~~~~~s~s~~wl~~v~~p~~~v~f~~~D~~~~ 940 (1100)
T KOG1805|consen 862 VSSLTLQYRMNREIMRLSNKLIYG-NRLKCGSKEVSRASELDRKGALSVYMDDSSSDHWLQAVLEPTRDVCFVNTDTCST 940 (1100)
T ss_pred HHhHHHHHhhcchHHhhhhhheEC-CeeeecChhhhhhhccccchhhhhhcccccchHHHHHhhcCCccceEEecCcccc
Confidence 679999999999999999999997 22111 555555444
Q ss_pred CCccCCCCCccCCHHHHHHHHHHHHHHHHhCCCCCCEEEecCCHHHHHHHHHHHHhcCCCCCCCCCCceeecccCCCCcc
Q 000509 1168 RGESAPSPWFYQNEGEAEYVVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQ 1247 (1456)
Q Consensus 1168 ~~e~~~~~~S~~N~~EAe~vv~iv~~L~~~Gy~~~~IgILTpY~aQ~~lIr~~L~~r~~~~~~~g~~v~V~TVD~fQG~E 1247 (1456)
..+ ........|..||..|+.++++++..|+++++|||||||++|+.+|++.+... .+.|.|||+|||++
T Consensus 941 ie~-~~e~~~i~N~~EA~li~~~~~~fv~sGv~~~dIGIis~YraQv~Li~~~l~~~---------~lEinTVD~yQGRD 1010 (1100)
T KOG1805|consen 941 IES-QGEKGGITNHGEAKLISELVEDFVKSGVKPSDIGIISPYRAQVELIRKILSSA---------VLEINTVDRYQGRD 1010 (1100)
T ss_pred hhh-hccccCcCchhHHHHHHHHHHHHHHcCCCHHHeeeeehHHHHHHHHHhhcccc---------ceeeeehhhhcCCC
Confidence 333 22233456999999999999999999999999999999999999999999863 38999999999999
Q ss_pred CCEEEEEecccCCc----cccccchhhHHHHhhhhccEEEEechhhhhhhccchHHHHHHHcCccccccccCCc
Q 000509 1248 NDFILLSLVRTRFV----GHLRDVRRLVVAMSRARLGLYVFCRRSLFEQCYELQPTFRLLLQRPDKLALTMNEK 1317 (1456)
Q Consensus 1248 ~DvVIlSlVRs~~~----GfL~d~rRLNVAlSRAR~~LiIvGn~~~l~~~~~~~~~~~~Ll~~~~~l~l~~~e~ 1317 (1456)
+|+||+|+||+++. ..|+|.||+|||+||||..||+||+...+.+...++.+++.+.++++-+.++.+-.
T Consensus 1011 Kd~IivSfvrsn~~~~~~eLLkD~rRlNVAlTRAK~KLIlvGs~s~l~~~~~~~~l~~~l~~~~~l~~~l~~~~ 1084 (1100)
T KOG1805|consen 1011 KDCIIVSFVRSNKKSKVGELLKDWRRLNVALTRAKKKLILVGSKSTLESYPPFRQLLKLLENRIELLTLLMRIL 1084 (1100)
T ss_pred CCEEEEEEEecCCcccHHHHHHhhHHHHHHHHhhhceEEEEecccccccCchHHHHHhhhhhhhhHHHHHHHHH
Confidence 99999999999854 67899999999999999999999999999999888888888777776555444433
No 8
>COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-33 Score=364.80 Aligned_cols=246 Identities=29% Similarity=0.344 Sum_probs=203.3
Q ss_pred hhccCcEEEEcchhHhhhhhHHhhcCCCCCEEEEecCCCCChHHHHHHHHhC-------CCCCCCceecchhhhhhcCCc
Q 000509 1043 MTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPMLLN-------DRRMLPPVVKNMAFQKYSHMD 1115 (1456)
Q Consensus 1043 llk~a~IIa~T~t~aa~~~~~l~~lg~kfD~VIIDEAsQitE~EtlIPLll~-------Dh~QLpPvV~s~~~~~~~~l~ 1115 (1456)
+...+++|++|+..+..... ... .||+||||||+|++++.+++|+..+ ||+||||++.... ....++.
T Consensus 465 i~~~~~~~~~~~~~a~~~~~--~~~--~fd~viiDEAsQ~~~~~~~~~l~~~~~~il~GD~kQL~p~~~~~~-~~~~~~~ 539 (767)
T COG1112 465 ILEAADVVLSTLSIAGFSIL--KKY--EFDYVIIDEASQATEPSALIALSRAKKVILVGDHKQLPPTVFFKE-SSPEGLS 539 (767)
T ss_pred HHHhcCeEEEeccchhHHHh--ccc--ccCEEEEcchhcccchhHHHhHhhcCeEEEecCCccCCCeecchh-hcccchh
Confidence 44556688888877764332 221 6999999999999999999999866 9999999997642 1235789
Q ss_pred ccHHHHHHHcCC-CeeeccccccCchhHHHHHHHHhccCCCCCc-----------------------eeecCCCCCCCcc
Q 000509 1116 QSLFTRFVRLGI-PYIELNAQGRARPSIAQLYNWRYRDLGDLPF-----------------------LVDVPDYNGRGES 1171 (1456)
Q Consensus 1116 qSLFeRL~~~g~-p~i~L~~QYR~~PsIa~~~n~~yy~l~dlp~-----------------------fidV~~~~g~~e~ 1171 (1456)
+|+|+|+...+. ....|+.||||||.|+.|.|..||+.....+ ++++.+ ..+
T Consensus 540 ~slf~~~~~~~~~~~~~L~~qyRm~~~i~~f~s~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~- 615 (767)
T COG1112 540 ASLFERLIDNGPEVVYLLRVQYRMHPDIIAFSSKVFYNGRLEVHTSFLAFTLLDGEIPEVVISNPLEFYDTLG---AEE- 615 (767)
T ss_pred HhHHHHHHHhCCchheeeeeecccChhhhhCchhhccCCccccCcchhhhhhhccccccccccCceEEEEecC---ccc-
Confidence 999999999886 8889999999999999999999998322111 333332 111
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHhCCCCCCEEEecCCHHHHHHHHHHHHhcCCCCCCCCCCceeecccCCCCccCCEE
Q 000509 1172 APSPWFYQNEGEAEYVVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFI 1251 (1456)
Q Consensus 1172 ~~~~~S~~N~~EAe~vv~iv~~L~~~Gy~~~~IgILTpY~aQ~~lIr~~L~~r~~~~~~~g~~v~V~TVD~fQG~E~DvV 1251 (1456)
.....++.|..||+.+..++..+...|+...+|||||||++|+.+|++.+.... ..+.|+|||+|||+|+|+|
T Consensus 616 ~~~~~~~~n~~e~~~~~~~~~~~~~~~~~~~~igvis~y~~q~~~i~~~~~~~~-------~~v~v~tvd~fQG~EkdvI 688 (767)
T COG1112 616 FFESKSKLNELEAEIVKVIVDELLKDGLEENDIGVISPYRAQVSLIRRLLNEAG-------KGVEVGTVDGFQGREKDVI 688 (767)
T ss_pred ccCccceecHHHHHHHHHHHHHHHHcCCcHHHcceecccHHHHHHHHHHHHhcC-------CceEEeeccccCCccCcEE
Confidence 346678999999999999999999999999999999999999999999998753 3589999999999999999
Q ss_pred EEEecccC----CccccccchhhHHHHhhhhccEEEEechhhhhhhccchHHHHHHHcCcc
Q 000509 1252 LLSLVRTR----FVGHLRDVRRLVVAMSRARLGLYVFCRRSLFEQCYELQPTFRLLLQRPD 1308 (1456)
Q Consensus 1252 IlSlVRs~----~~GfL~d~rRLNVAlSRAR~~LiIvGn~~~l~~~~~~~~~~~~Ll~~~~ 1308 (1456)
|+|+||++ .+||+.|.||||||+||||.+|||||+...+... +.|..+...+.
T Consensus 689 i~S~v~s~~~~~~i~~l~d~rRLNVAlTRAk~~livvg~~~~l~~~----~~~~~~~~~~~ 745 (767)
T COG1112 689 ILSLVRSNDDKGEIGFLGDPRRLNVALTRAKRKLIVVGSSSTLESD----PLYKRLINDLK 745 (767)
T ss_pred EEEEEeecCCCccccccCchhhhhhhhhcccceEEEEcChhHhhhc----hhHHHHHHHHH
Confidence 99999987 4599999999999999999999999999998887 55555555444
No 9
>PF13087 AAA_12: AAA domain; PDB: 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A 2XZL_A.
Probab=99.97 E-value=2.6e-31 Score=289.17 Aligned_cols=171 Identities=36% Similarity=0.526 Sum_probs=123.8
Q ss_pred CcccHHHHHHHcC-CCeeeccccccCchhHHHHHHHHhccCC----------CCC------c------eeecCCCCCCCc
Q 000509 1114 MDQSLFTRFVRLG-IPYIELNAQGRARPSIAQLYNWRYRDLG----------DLP------F------LVDVPDYNGRGE 1170 (1456)
Q Consensus 1114 l~qSLFeRL~~~g-~p~i~L~~QYR~~PsIa~~~n~~yy~l~----------dlp------~------fidV~~~~g~~e 1170 (1456)
+++|||+|+.+.+ .|.++|++||||||+|++|+|..||+.. ..+ . |+++++.. ..
T Consensus 1 ~~~Slferl~~~~~~~~~~L~~qyR~~~~I~~~~s~~fY~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~--~~ 78 (200)
T PF13087_consen 1 LDRSLFERLIKNGSVPVVMLTEQYRMHPEIADFSSRLFYNGKLVSGPSVKNRPAPLLKLLPSPQNPIVFIDVSGSE--SS 78 (200)
T ss_dssp TTS-HHHHHHHCT----EE--EE-SS-HHHHHHHHHHHSTT--EESS-TCCCS-T-----SSTTSSEEEEE----E--EE
T ss_pred CCccHHHHHHHcCCCCceecccccCCCHHHHHHHHHHHhchhcccCcccccccccccccccCCCCceEEEeccccc--cc
Confidence 5789999999999 9999999999999999999999988721 011 0 77776521 12
Q ss_pred cCCCCCccCCHHHHHHHHHHHHHHHHhCCCC---CCEEEecCCHHHHHHHHHHHHhcCCCCCCCCCCceeecccCCCCcc
Q 000509 1171 SAPSPWFYQNEGEAEYVVSVYIYMRLLGYPA---NKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQ 1247 (1456)
Q Consensus 1171 ~~~~~~S~~N~~EAe~vv~iv~~L~~~Gy~~---~~IgILTpY~aQ~~lIr~~L~~r~~~~~~~g~~v~V~TVD~fQG~E 1247 (1456)
......|+.|..||+++++++..|...+... .+|+|||||++|+.+|++.+........... +.|+|||+|||+|
T Consensus 79 ~~~~~~s~~N~~Ea~~i~~~~~~l~~~~~~~~~~~~I~Iitpy~~Q~~~i~~~l~~~~~~~~~~~--~~v~Tvd~~QG~E 156 (200)
T PF13087_consen 79 SESSQTSYYNPDEAEFIVELVRDLLDNGPDSNKPSSIGIITPYRAQVALIRKALRSRYPSSPIKD--IKVSTVDSFQGQE 156 (200)
T ss_dssp ETTC-SCEEEHHHHHHHHHHHHHHHHTT--G---GGEEEEES-HHHHHHHHHHHHHCSTCHHHHC--SEEEEHHHHTT--
T ss_pred ccccccceechhhHHHHHHHHhhhhhccccccccCCceEEcCchHHHHHHHHHHhhhccccccce--EEEecHHHhcccc
Confidence 2222378999999999999999999988776 7899999999999999999998755432212 8999999999999
Q ss_pred CCEEEEEecccC---CccccccchhhHHHHhhhhccEEEEechh
Q 000509 1248 NDFILLSLVRTR---FVGHLRDVRRLVVAMSRARLGLYVFCRRS 1288 (1456)
Q Consensus 1248 ~DvVIlSlVRs~---~~GfL~d~rRLNVAlSRAR~~LiIvGn~~ 1288 (1456)
+|+||+|+|+++ ..||+.+.+|+|||+||||.++|||||++
T Consensus 157 ~diVi~s~v~~~~~~~~~f~~~~~r~nVA~SRAk~~liiig~~~ 200 (200)
T PF13087_consen 157 ADIVIVSLVRTNSSSNIGFLNDPNRLNVALSRAKSGLIIIGNPE 200 (200)
T ss_dssp EEEEEEEE---STTS-SGGGC-HHHHHHHHTSEEEEEEEEE-H-
T ss_pred ceEEEEEeccCCccccccccCCcCeeeeeHHHHhcCEEEEecCC
Confidence 999999999985 68999999999999999999999999963
No 10
>KOG1801 consensus tRNA-splicing endonuclease positive effector (SEN1) [RNA processing and modification]
Probab=99.97 E-value=5.5e-30 Score=329.47 Aligned_cols=255 Identities=22% Similarity=0.273 Sum_probs=208.6
Q ss_pred cCcEEEEcchhHhhhhhHHhhcCCCCCEEEEecCCCCChHHHHHHHHhC---------CCCCCCceecchhhhhhcCCcc
Q 000509 1046 QAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPMLLN---------DRRMLPPVVKNMAFQKYSHMDQ 1116 (1456)
Q Consensus 1046 ~a~IIa~T~t~aa~~~~~l~~lg~kfD~VIIDEAsQitE~EtlIPLll~---------Dh~QLpPvV~s~~~~~~~~l~q 1116 (1456)
.+.+|++|+.+.+.. .....+..||.+|||||+|..|+.+++||.+. |..|||++|.+..+.. ..+.+
T Consensus 514 ~a~~i~~t~~~~~~~--~~~~~~~p~~~vviDeaaq~~e~~s~~PL~l~g~~~~~lvgd~~qlP~~V~s~~~~~-~k~~~ 590 (827)
T KOG1801|consen 514 EAALIVPTTRGSRIV--LTLYGGPPLDTVVIDEAAQKYEPSSLEPLQLAGYQHCILVGDLAQLPATVHSSPAGC-FKYMT 590 (827)
T ss_pred cceeEeecccccceE--eecccCCCceEEEEehhhhhcCccchhhhhhcCCceEEEecccccCChhhccchhcc-ccchh
Confidence 788998887765531 22334558999999999999999999999983 9999999999977666 57999
Q ss_pred cHHHHHHHcCCCeeeccccccCchhHHHHHHHHhccC--CCCCc--------------------eeecCCCCCCCccCCC
Q 000509 1117 SLFTRFVRLGIPYIELNAQGRARPSIAQLYNWRYRDL--GDLPF--------------------LVDVPDYNGRGESAPS 1174 (1456)
Q Consensus 1117 SLFeRL~~~g~p~i~L~~QYR~~PsIa~~~n~~yy~l--~dlp~--------------------fidV~~~~g~~e~~~~ 1174 (1456)
|+|+|+...+.+...|+.||||||+|+.|.+..||++ .+.+. |+++.. |.++. ..
T Consensus 591 slf~rl~l~~~~~~~L~vqyrmhp~Is~fP~~~fy~~~i~d~~~vs~~~~~~~~~~~~~~~~y~f~~v~~--g~e~~-~~ 667 (827)
T KOG1801|consen 591 SLFERLELAGHKTLLLTVQYRMHPEISRFPSKEFYGGRLKDVNNVSESNTVKLWHSGETFGPYPFFNVHY--GKERA-GG 667 (827)
T ss_pred hHHHHHHHccCccceecceeecCCccccCccccccccccccCcccchhhccccCcCCCccCceEEEEecc--ccccc-CC
Confidence 9999999999999999999999999999999999984 33332 888875 43333 33
Q ss_pred CCccCCHHHHHHHHHHHHHHHHh----CCCCCCEEEecCCHHHHHHHHHHHHhcCCCCCCCCCCceeecccCCCCccCCE
Q 000509 1175 PWFYQNEGEAEYVVSVYIYMRLL----GYPANKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDF 1250 (1456)
Q Consensus 1175 ~~S~~N~~EAe~vv~iv~~L~~~----Gy~~~~IgILTpY~aQ~~lIr~~L~~r~~~~~~~g~~v~V~TVD~fQG~E~Dv 1250 (1456)
+.|..|..|+.++..++.++... +..+..+||++||+.|+..+++.+......-......+.|.|||.|||+|.|+
T Consensus 668 ~~s~~n~~E~~~~~~~~~~l~~~~~~~~~~~~~vGvisPY~~q~~~l~~~~~~~~~~~~~~~~~i~v~tvD~fqg~e~di 747 (827)
T KOG1801|consen 668 GKSPVNNEEVRFVGAIYSRLYKVSQPQVSVPGSVGVISPYKNQVKALRERFPEAYSLLLANNVDLSVSTVDSFQGGERDI 747 (827)
T ss_pred CCCcccHHHHHHHHHHHHHHHhhccccCCCCcceeeECchHHHHHHHHHHHHHHhcchhcccceeEEEecccccCCCCce
Confidence 48899999999999999988765 33366799999999999999999987644211111348899999999999999
Q ss_pred EEEEecccC---CccccccchhhHHHHhhhhccEEEEechhhhhhhccchHHHHHHHcCccc
Q 000509 1251 ILLSLVRTR---FVGHLRDVRRLVVAMSRARLGLYVFCRRSLFEQCYELQPTFRLLLQRPDK 1309 (1456)
Q Consensus 1251 VIlSlVRs~---~~GfL~d~rRLNVAlSRAR~~LiIvGn~~~l~~~~~~~~~~~~Ll~~~~~ 1309 (1456)
+|+|+||+. ++||+.+.+|+|||+||||.++|++||...|... ...|..++.-+..
T Consensus 748 ii~s~vrs~~~g~igf~~~~~RlnvALtra~~~l~v~Gne~~L~~~---~~~w~~li~da~~ 806 (827)
T KOG1801|consen 748 IIISTVRSIDEGSIGFECNLRRLNVALTRARTCFWLVGNEITLAPS---CSIWASLILDAKG 806 (827)
T ss_pred eEEEEEEecccCccchhhhHHHHHHhhcccccceEEecCccccccc---cchhhhhcchhcc
Confidence 999999986 5799999999999999999999999999988765 3446666655543
No 11
>KOG1804 consensus RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.4e-30 Score=323.66 Aligned_cols=264 Identities=27% Similarity=0.219 Sum_probs=211.5
Q ss_pred hccCcEEEEcchhHhhhhhHHhhcCCCCCEEEEecCCCCChHHHHHHHHhC----------CCCCCCceecchhhhhhcC
Q 000509 1044 TKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPMLLN----------DRRMLPPVVKNMAFQKYSH 1113 (1456)
Q Consensus 1044 lk~a~IIa~T~t~aa~~~~~l~~lg~kfD~VIIDEAsQitE~EtlIPLll~----------Dh~QLpPvV~s~~~~~~~~ 1113 (1456)
+...+|+++||+++......-... ++|.++++|||++.+|+|++||+... ||+||+|++++....+ .+
T Consensus 417 ~~~~~i~i~t~~sag~~~~~g~~v-~~f~hil~DeAg~stEpe~lv~i~~~~~~~~vvLsgdh~Qlgpv~~s~~A~~-~g 494 (775)
T KOG1804|consen 417 VWPYRWGITTCTSAGCVTSYGFQV-GHFRHILVDEAGVSTEPELLVPGKQFRQPFQVVLSGDHTQLGPVSKSARAEE-LG 494 (775)
T ss_pred ccceEEEEeeccceeeeecccccc-cceeeeeecccccccCcccccccccccceeEEEEccCcccccccccchhhhh-hc
Confidence 367899999999988654433333 26899999999999999999998543 9999999999998877 58
Q ss_pred CcccHHHHHHHcC------------CCeeeccccccCchhHHHHHHHHhccCCCCCc--------------eeecCCCCC
Q 000509 1114 MDQSLFTRFVRLG------------IPYIELNAQGRARPSIAQLYNWRYRDLGDLPF--------------LVDVPDYNG 1167 (1456)
Q Consensus 1114 l~qSLFeRL~~~g------------~p~i~L~~QYR~~PsIa~~~n~~yy~l~dlp~--------------fidV~~~~g 1167 (1456)
++.|||+|+.... .-.+.|..+||+||.|..++|..||..+-... .+-..+..|
T Consensus 495 l~rsLler~l~r~~~~~~~~g~~~~l~~t~l~rnyrshp~il~l~~~l~y~~eL~~~~~~~~v~~~~~w~~liif~g~~G 574 (775)
T KOG1804|consen 495 LDRSLLERALTRAQSLVAVVGDYNALCSTGLCRNYRSHPIILCLENRLYYLGELTAEASEVDVRGLELWSGLILFYGAPG 574 (775)
T ss_pred ccHHHHHHHHHHHhhccccCCCcccccchhhHHHHhhhhHhhhcccccccccceeeeccHHHHHHHHhcccceecccccc
Confidence 9999999998531 22568999999999999999999998443222 333445667
Q ss_pred CCccCCCCCccCCHHHHHHHHHHHHHHHHhC-CCCCCEEEecCCHHHHHHHHHHHHhcCCCCCCCCCCceeecccCCCCc
Q 000509 1168 RGESAPSPWFYQNEGEAEYVVSVYIYMRLLG-YPANKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQ 1246 (1456)
Q Consensus 1168 ~~e~~~~~~S~~N~~EAe~vv~iv~~L~~~G-y~~~~IgILTpY~aQ~~lIr~~L~~r~~~~~~~g~~v~V~TVD~fQG~ 1246 (1456)
..+....+.|+.|..||..|..+...+.... ....||||||||++|+..|+..++..... +++|++|+.|||+
T Consensus 575 ~~~r~~~s~S~~n~~Ea~~V~~~~k~l~~~~~~~~~DIgvitpy~aq~~~i~~~l~~~~~~------~~~vgsVe~fqGq 648 (775)
T KOG1804|consen 575 FTERAGNSPSWLNLEEAAVVVRMTKALPLGEVAQPQDIGVITPYTAQVSEIRKALRRLGVP------GVKVGSVEEFQGQ 648 (775)
T ss_pred ccccccCChhhccHHHHHHHHHHHhccCCCCccccccceeeCcHHHHHHHHHHHhcccCCC------CCcccceeeeccc
Confidence 7788888889999999999977665553321 22448999999999999999999987443 4899999999999
Q ss_pred cCCEEEEEecccC---------CccccccchhhHHHHhhhhccEEEEechhhhhhhccchHHHHHHHcCccccccccCCc
Q 000509 1247 QNDFILLSLVRTR---------FVGHLRDVRRLVVAMSRARLGLYVFCRRSLFEQCYELQPTFRLLLQRPDKLALTMNEK 1317 (1456)
Q Consensus 1247 E~DvVIlSlVRs~---------~~GfL~d~rRLNVAlSRAR~~LiIvGn~~~l~~~~~~~~~~~~Ll~~~~~l~l~~~e~ 1317 (1456)
|..+||+|+||+. ..+|+.+++|+|||++||+..++++|+..++..+ +.|..++-.+....-..|+.
T Consensus 649 E~~viiiStVrS~~~~~~~~~~~~~fls~pk~l~v~V~rp~~l~i~~~~~h~~~~~----~~~~~~l~~~~~n~~y~~c~ 724 (775)
T KOG1804|consen 649 EPWVILGSTVRSFALPLLDDRYFGLFLSRPKRLLVAVGRPRALLINLGNPHLLGGD----PPWGLLLLLRVENGRYPGCD 724 (775)
T ss_pred cceeeEeecccccCCCcccccccceeecCcccceeeccCccccccccCCcccccCC----CChhhheeeeecCCcccCCC
Confidence 9999999999985 2348999999999999999999999999999888 77777777766433344444
Q ss_pred cc
Q 000509 1318 TS 1319 (1456)
Q Consensus 1318 ~p 1319 (1456)
+|
T Consensus 725 ~~ 726 (775)
T KOG1804|consen 725 FP 726 (775)
T ss_pred CC
Confidence 33
No 12
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=99.94 E-value=8.9e-27 Score=256.93 Aligned_cols=213 Identities=26% Similarity=0.414 Sum_probs=112.3
Q ss_pred CCCHHHHHHHHhccCCCc-EEEEcCCCCChHHHHHHHHHHHH------HcCCCCcEEEEecCHHHHHHHHHHHHh-----
Q 000509 819 RFTPTQVGAIISGIQPGL-TMVVGPPGTGKTDTAVQILNVLY------HNCPSQRTLIITHSNQALNDLFEKIMQ----- 886 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~~gl-tLI~GPPGTGKT~tia~iI~~L~------~~~p~~rILIvA~SN~AlD~L~ekL~~----- 886 (1456)
.||++|.+||.+++..+. ++|+||||||||+|++.++..++ ...++.+||+||+||.|+|++++++.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~~~~~~ 80 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKKLLDED 80 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC-----
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHhhcccc
Confidence 489999999999997775 99999999999999999999994 356789999999999999999999998
Q ss_pred cCCCcccEEEccCcc-cccccccchhhhhHHHHHHH-HHHHHHHHHHHHHHhcCCCCccccccccchhhhHhhhHHHHHH
Q 000509 887 RDVPARYLLRLGQGE-QELATDLDFSRQGRVNAMLV-RRLELLSEVERLARSLQLPEDVGYTCETAGYFWLLHVYSRWEQ 964 (1456)
Q Consensus 887 l~i~e~~llRlG~~e-~~l~~~~~~sr~gRv~~~l~-~r~~lL~ev~kLa~~l~~~~~~~~sceta~~f~~~~v~~~w~~ 964 (1456)
.......++|+|+.. ........++...++..... ....+.++.+++...+ ....
T Consensus 81 ~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~ 137 (236)
T PF13086_consen 81 GKVYKPKIIRLGSEEEKIHEDLQKFSLESKLEQRFESKLKRLREQLEELQQKI-----------------------RLSE 137 (236)
T ss_dssp ---TT--EEE---GGTTS--TTGGGBHHHHHHTTT-----------THHHCHH-----------------------HHHH
T ss_pred ccccccchhhhcccccccccccccccccccccccccccchhhhHHHHHHHHhh-----------------------hhhh
Confidence 234556799999876 21222222221111111100 0000000000000000 0000
Q ss_pred HHHHhhccCCCCcccccccchhhhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000509 965 FLAACADNEGKPTFVRDRFPFKEFFSNTPQPIFTGDSFEKDMRAAKGCFRHLQTLFQELEECRAFELLKSTADRANYLMT 1044 (1456)
Q Consensus 965 fl~~l~~~~~~~~~i~~~fpf~~~f~~~p~~l~~~~s~e~~l~~a~~~~~~i~~if~eL~e~r~fElLr~~~~r~~~lll 1044 (1456)
.. .....+..... +....++.........++
T Consensus 138 ~~-----------------------------------------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l 168 (236)
T PF13086_consen 138 LK-----------------------------------------------EEKKKLKKSIK--RLRKELEKIREELRRFIL 168 (236)
T ss_dssp HH-----------------------------------------------HHHCCSSCHHH--HHHHHHHHHHHHHHHHHH
T ss_pred hh-----------------------------------------------hhhhhcchhcc--cccccccccccchhhhhc
Confidence 00 00000000000 001112222333445678
Q ss_pred ccCcEEEEcchhHhhhhhHHhhcCCCCCEEEEecCCCCChHHHHHHHHhC--------CCCCCCceecc
Q 000509 1045 KQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPMLLN--------DRRMLPPVVKN 1105 (1456)
Q Consensus 1045 k~a~IIa~T~t~aa~~~~~l~~lg~kfD~VIIDEAsQitE~EtlIPLll~--------Dh~QLpPvV~s 1105 (1456)
+.++||+||++++... .+...+..||+||||||+|++|+++++||.++ ||+||||++.+
T Consensus 169 ~~~~vi~~T~~~~~~~--~~~~~~~~~d~vIvDEAsq~~e~~~l~~l~~~~~~~vlvGD~~QLpP~v~s 235 (236)
T PF13086_consen 169 KEADVIFTTLSSAASP--FLSNFKEKFDVVIVDEASQITEPEALIPLSRAPKRIVLVGDPKQLPPVVKS 235 (236)
T ss_dssp HT-SEEEEETCGGG-C--CGTT-----SEEEETTGGGS-HHHHHHHHTTTBSEEEEEE-TTS-----S-
T ss_pred ccccccccccccchhh--HhhhhcccCCEEEEeCCCCcchHHHHHHHHHhCCEEEEECChhhcCCeeCC
Confidence 9999999999988432 23333337999999999999999999999766 99999999876
No 13
>PRK11054 helD DNA helicase IV; Provisional
Probab=99.87 E-value=6.6e-20 Score=232.66 Aligned_cols=208 Identities=19% Similarity=0.243 Sum_probs=129.5
Q ss_pred CCCEEEEecCCCCChHHHH-HHHHh-----------CCCCCCCceecchhhhhhcCCcccHHHHHHHc-C-CCeeecccc
Q 000509 1070 KYDNLLMEESAQILEIETF-IPMLL-----------NDRRMLPPVVKNMAFQKYSHMDQSLFTRFVRL-G-IPYIELNAQ 1135 (1456)
Q Consensus 1070 kfD~VIIDEAsQitE~Etl-IPLll-----------~Dh~QLpPvV~s~~~~~~~~l~qSLFeRL~~~-g-~p~i~L~~Q 1135 (1456)
+|++|+|||+++++..+.- +-.+. +|+.|--- .+.+-+.+++..+... + ...+.|+++
T Consensus 430 ~~~~IlVDE~QD~s~~q~~ll~~l~~~~~~~~l~~VGD~~QsIY--------~frGa~~~~~~~f~~~f~~~~~~~L~~n 501 (684)
T PRK11054 430 PWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIY--------RFSGADLSLTTAFHERFGEGDRCHLDTT 501 (684)
T ss_pred cccEEEEEccccCCHHHHHHHHHHhccCCCCeEEEEECCCcccc--------ccCCCChHHHHHHHhhcCCCeEEEeCCC
Confidence 5999999999999887632 22221 17777311 1234445566555432 2 246789999
Q ss_pred ccCchhHHHHHHHHhccCC-CCCc-eeecCCCCCCCccCCCCCccCCHHHHHHHHHHHHHHHHhCCCCCCEEEecCCHHH
Q 000509 1136 GRARPSIAQLYNWRYRDLG-DLPF-LVDVPDYNGRGESAPSPWFYQNEGEAEYVVSVYIYMRLLGYPANKISILTTYNGQ 1213 (1456)
Q Consensus 1136 YR~~PsIa~~~n~~yy~l~-dlp~-fidV~~~~g~~e~~~~~~S~~N~~EAe~vv~iv~~L~~~Gy~~~~IgILTpY~aQ 1213 (1456)
||++++|+++.|.++.... .++. ..... .| .. |...-..+ .+.+.+++.+.... -+.++|+||+.|+.+
T Consensus 502 YRs~~~I~~~An~~i~~n~~~~~k~l~s~~--~g--~~-p~v~~~~~-~~~~~il~~l~~~~---~~~~~I~IL~R~~~~ 572 (684)
T PRK11054 502 YRFNSRIGEVANRFIQQNPHQLKKPLNSLT--KG--DK-KAVTLLPE-DQLEALLDKLSGYA---KPDERILLLARYHHL 572 (684)
T ss_pred CCCCHHHHHHHHHHHHhCccccCCcccccC--CC--CC-ceEEEeCC-HHHHHHHHHHHHhh---cCCCcEEEEEechhh
Confidence 9999999999998875311 1111 11111 11 11 11111112 34554554444332 346799999999988
Q ss_pred HHHHHHHHHhcCCCCCCCCCCceeecccCCCCccCCEEEEEecccCCcccc----------------------ccchhhH
Q 000509 1214 KLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQNDFILLSLVRTRFVGHL----------------------RDVRRLV 1271 (1456)
Q Consensus 1214 ~~lIr~~L~~r~~~~~~~g~~v~V~TVD~fQG~E~DvVIlSlVRs~~~GfL----------------------~d~rRLN 1271 (1456)
...+.+.+..+. + +.+|.+.|+|...|.|+|+||+-.+.....||- .+.|.++
T Consensus 573 ~~~~l~~~~~~~---~--~~~i~~~T~h~sKGLEfD~ViI~g~~~g~~gfP~~~~~~~~~~~~~~~~~~~~~~eERRLlY 647 (684)
T PRK11054 573 RPALLDKAATRW---P--KLQIDFMTIHASKGQQADYVIILGLQEGQDGFPAPARESIMEEALLPPPEDFPDAEERRLLY 647 (684)
T ss_pred HHHHHHHHHhhc---c--cCCeEEEehhhhcCCcCCEEEEecCCcCcccCCcccccchhhhcccccccccccHHHHHHHH
Confidence 765444444331 1 235899999999999999999977765433332 2356679
Q ss_pred HHHhhhhccEEEEechhhhhhhccchHHHHHHHc
Q 000509 1272 VAMSRARLGLYVFCRRSLFEQCYELQPTFRLLLQ 1305 (1456)
Q Consensus 1272 VAlSRAR~~LiIvGn~~~l~~~~~~~~~~~~Ll~ 1305 (1456)
||+||||+.++|+.+.. ..+++...|.+
T Consensus 648 VAlTRAr~~l~i~~~~~------~~S~fv~el~~ 675 (684)
T PRK11054 648 VALTRAKHRVWLLFNKG------NPSPFVEELKN 675 (684)
T ss_pred HHhhhhhcEEEEEEcCC------CCCHHHHHHhh
Confidence 99999999999998732 23466666654
No 14
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=99.85 E-value=1.3e-19 Score=233.70 Aligned_cols=67 Identities=22% Similarity=0.297 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHc--CCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 819 RFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHN--CPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~--~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.||++|.+||... .|..+|.|+||||||+|++..|.+|+.. .+..+||++|+||.|++++.+|+.++
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 5999999999865 4779999999999999999999999964 35689999999999999999999875
No 15
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=99.83 E-value=3.1e-19 Score=230.17 Aligned_cols=67 Identities=21% Similarity=0.308 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHc--CCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 819 RFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHN--CPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~--~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.||++|.+||... .|..+|.|+||||||+|++..|.+|+.. .+..+||++|+||.|++++.+|+.++
T Consensus 4 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 4 GLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred ccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4999999999764 5779999999999999999999999974 35689999999999999999999875
No 16
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=99.82 E-value=1.4e-18 Score=224.66 Aligned_cols=67 Identities=22% Similarity=0.348 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHc--CCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 819 RFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHN--CPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~--~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.||++|.+||... .|..+|.|+||||||+|++..|.+|+.. .+..+||++|+||.|+.++.+|+.++
T Consensus 4 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 4 HLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred ccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 5999999999864 5779999999999999999999999975 35689999999999999999999875
No 17
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=99.82 E-value=2.7e-18 Score=219.30 Aligned_cols=67 Identities=24% Similarity=0.357 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHc--CCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 819 RFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHN--CPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~--~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.||++|.+||... .|..+|.|+||||||+|++..|++|+.. .+.++||++|+||.|++++.+|+.+.
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 5999999999864 5778999999999999999999999964 35689999999999999999999864
No 18
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=99.78 E-value=9.1e-18 Score=215.24 Aligned_cols=67 Identities=22% Similarity=0.212 Sum_probs=57.8
Q ss_pred CCCCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHH
Q 000509 816 NSVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFE 882 (1456)
Q Consensus 816 n~v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~e 882 (1456)
..+.||+.|++||..+...++++|.|+||||||+++..++..+-...+..+|++||||+.|+..|.+
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHH
Confidence 4578999999999999999999999999999999999888877655323789999999999986643
No 19
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=99.76 E-value=7.9e-18 Score=210.56 Aligned_cols=65 Identities=26% Similarity=0.410 Sum_probs=58.3
Q ss_pred HHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCC---CcEEEEecCHHHHHHHHHHHHh
Q 000509 822 PTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPS---QRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 822 ~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~---~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
+.|+.|+..++.+++++|.|+||||||+|++.++..+....+. .+|+++|||..|+..|.+.+..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999988765433 5899999999999999887754
No 20
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=99.75 E-value=6.9e-17 Score=202.48 Aligned_cols=67 Identities=24% Similarity=0.281 Sum_probs=59.0
Q ss_pred CCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcC--CCCcEEEEecCHHHHHHHHHHHHh
Q 000509 820 FTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNC--PSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 820 Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~--p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
..+.|++|+..++..++++|.||||||||||+..++..+.+.. +..+|+++|||+.|+..|.+.+..
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 3579999999999999999999999999999999999887643 246899999999999999887753
No 21
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=99.71 E-value=3.2e-16 Score=201.74 Aligned_cols=63 Identities=22% Similarity=0.208 Sum_probs=55.1
Q ss_pred CCCCCHHHHHHHHhccC-CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHH
Q 000509 817 SVRFTPTQVGAIISGIQ-PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLF 881 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~-~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ 881 (1456)
.+.||+.|++||...+. .++++|+||||||||+++..++..+-.. +.+|++||||+.|+..|-
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~--g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAA--GYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhC--CCeEEEEeCcHHHHHHHH
Confidence 47799999999998875 5899999999999999999887766554 789999999999998774
No 22
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=99.65 E-value=1e-14 Score=174.50 Aligned_cols=151 Identities=20% Similarity=0.195 Sum_probs=115.7
Q ss_pred CCeeeccccccCchhHHHHHHHHhccCCCCCceeecCCCCCCCccCCCCCccCCHHHHHHHHHHHHHHHHhCCCCCCEEE
Q 000509 1127 IPYIELNAQGRARPSIAQLYNWRYRDLGDLPFLVDVPDYNGRGESAPSPWFYQNEGEAEYVVSVYIYMRLLGYPANKISI 1206 (1456)
Q Consensus 1127 ~p~i~L~~QYR~~PsIa~~~n~~yy~l~dlp~fidV~~~~g~~e~~~~~~S~~N~~EAe~vv~iv~~L~~~Gy~~~~IgI 1206 (1456)
+.++.|..+||++.+|.+|.+....+. .+...+.-.|+.+.+-.+..|..=.+.+-.++-.|...|. +.|+|
T Consensus 589 ~e~v~l~~syrSt~eI~efan~~l~d~------~~~~p~~rsge~p~~i~~~~ne~l~qr~~~ii~~mkk~~~--etiaV 660 (747)
T COG3973 589 FEYVGLIASYRSTAEIDEFANSLLPDR------FRIHPLTRSGEKPAVIMSVANEELVQRNPDIIPRMKKRGS--ETIAV 660 (747)
T ss_pred chhhhhhhhhcChHHHHHHHHHhccCC------CccchhhcCCCCceeeeccchHHHHHhhHHHHHHHHhcCC--CceEE
Confidence 668899999999999999999988841 1222233346666666777888877888888888877764 58999
Q ss_pred ecCCHHHHHHHHHHHHhcCCC------CCCCCCCceeecccCCCCccCCEEEEEecccCCccccccchhhHHHHhhhhcc
Q 000509 1207 LTTYNGQKLLIRDVINRQCVP------YPFIGPPSKVTTVDKFQGQQNDFILLSLVRTRFVGHLRDVRRLVVAMSRARLG 1280 (1456)
Q Consensus 1207 LTpY~aQ~~lIr~~L~~r~~~------~~~~g~~v~V~TVD~fQG~E~DvVIlSlVRs~~~GfL~d~rRLNVAlSRAR~~ 1280 (1456)
||+...|...+.+.|+..... +..|.....|-.|+...|.|+|.||+--.- ..-.--.+.+-|+||+|||-+.
T Consensus 661 i~kt~~d~~~~~d~lre~~~~r~I~k~nq~f~~~~~vipvy~aKGlEFD~viv~d~s-~~e~te~~~r~LYva~TRAlh~ 739 (747)
T COG3973 661 ICKTDHDCKAVMDSLREKDSQRTIAKENQRFHHGSDVIPVYDAKGLEFDHVIVVDPS-IVEETEQDLRDLYVAVTRALHS 739 (747)
T ss_pred ECCcHHHHHHHHHHHhhcchhhHHHhhcccccCCceEEEeeecccceeeeEEEecch-hhcccccchhhHHHHHHHHHHH
Confidence 999999999999999976432 334555678999999999999988874332 1111234678899999999999
Q ss_pred EEEEec
Q 000509 1281 LYVFCR 1286 (1456)
Q Consensus 1281 LiIvGn 1286 (1456)
|+|||-
T Consensus 740 l~if~~ 745 (747)
T COG3973 740 LYIFGE 745 (747)
T ss_pred HHHhhc
Confidence 999974
No 23
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=99.65 E-value=4.2e-14 Score=191.32 Aligned_cols=66 Identities=26% Similarity=0.307 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCC-CCcEEEEecCHHHHHHHHHHHHh
Q 000509 819 RFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCP-SQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p-~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
.+|++|.+||.+ ..+-.+|.+.+|||||+|++..+..++.... -.+||++|+||.|+.++.+||.+
T Consensus 1 ~~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 1 QWTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHH
Confidence 479999999984 2445799999999999999999988775432 36799999999999999888866
No 24
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=99.61 E-value=6.5e-14 Score=179.96 Aligned_cols=67 Identities=22% Similarity=0.373 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHc--CCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 819 RFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHN--CPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~--~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.||+.|.+||... .|..+|.|+||||||+|++..|.+++.. .+.++||++|+||.|+.++-++|.+.
T Consensus 1 ~Ln~~Q~~av~~~--~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~ 69 (664)
T TIGR01074 1 KLNPQQQEAVEYV--TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKT 69 (664)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4899999999864 5779999999999999999999999964 35689999999999999999999864
No 25
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=99.59 E-value=7.5e-14 Score=182.48 Aligned_cols=63 Identities=22% Similarity=0.167 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHhcc-CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHH
Q 000509 817 SVRFTPTQVGAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLF 881 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal-~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ 881 (1456)
.+.||+.|.+||.... ..++++|+|+|||||||++..++..+-.. +.+|+.+|||+.|+..|-
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~--G~~V~g~ApTgkAA~~L~ 442 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAA--GYRVVGGALAGKAAEGLE 442 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEcCcHHHHHHHH
Confidence 4789999999998765 57899999999999999999887666544 789999999999998774
No 26
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=5.7e-14 Score=188.01 Aligned_cols=54 Identities=30% Similarity=0.371 Sum_probs=48.5
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcC---CCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNC---PSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~---p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.|..+|...||||||+|++.++..|+.+. +.++|||+|+||.|..+|.+||.+.
T Consensus 9 ~G~~lieAsAGtGKT~ti~~~~lrll~~~~~~~~~~iLvvTFT~aAt~el~~RIr~r 65 (1087)
T TIGR00609 9 NGTFLIEASAGTGKTFTIAQLYLRLLLEGGPLTVEEILVVTFTNAATEELKTRIRGR 65 (1087)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHhcCCCCChhhEEEEehhHHHHHHHHHHHHHH
Confidence 47899999999999999999999888764 3489999999999999999999873
No 27
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=99.58 E-value=5.5e-14 Score=183.10 Aligned_cols=63 Identities=21% Similarity=0.123 Sum_probs=52.6
Q ss_pred CCCCCHHHHHHHHhccC-CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHH
Q 000509 817 SVRFTPTQVGAIISGIQ-PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLF 881 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~-~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ 881 (1456)
.+.||+.|.+||..+++ .++++|+|+|||||||++..++..+-.. +.+|++||||+.|+..|-
T Consensus 344 g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~--G~~V~~~ApTGkAA~~L~ 407 (988)
T PRK13889 344 GLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAA--GYEVRGAALSGIAAENLE 407 (988)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEecCcHHHHHHHh
Confidence 57899999999998886 6799999999999999876655444333 789999999999997763
No 28
>PRK13909 putative recombination protein RecB; Provisional
Probab=99.54 E-value=4.2e-13 Score=177.29 Aligned_cols=148 Identities=17% Similarity=0.233 Sum_probs=96.6
Q ss_pred cCCCCCEEEEecCCCCChHHH--HHHHH-----------------hCCCCCCCceecchhhhhhcCCcccHHHHHHHc-C
Q 000509 1067 LGFKYDNLLMEESAQILEIET--FIPML-----------------LNDRRMLPPVVKNMAFQKYSHMDQSLFTRFVRL-G 1126 (1456)
Q Consensus 1067 lg~kfD~VIIDEAsQitE~Et--lIPLl-----------------l~Dh~QLpPvV~s~~~~~~~~l~qSLFeRL~~~-g 1126 (1456)
++.+|++|+|||+++++..+. +-+|. .+|++|- +-.+.+-+..+|.++... +
T Consensus 325 l~~~~~~ilVDEfQDTs~~Q~~il~~L~~~~~~~~~~~~~~~lf~VGD~kQS--------IY~FRGA~~~~f~~~~~~~~ 396 (910)
T PRK13909 325 LDSKISHILIDEFQDTSVLQYKILLPLIDEIKSGEGQKKFRSFFYVGDVKQS--------IYRFRGGKKELFDKVSKDFK 396 (910)
T ss_pred HhcCCCEEEEECccCCCHHHHHHHHHHHHHhhcccccCCCCeEEEEcCchhh--------hhhhcCCChHHHHHHHHHhh
Confidence 455899999999999998764 34442 1177771 222334556788877642 1
Q ss_pred CCeeeccccccCchhHHHHHHHHhccCC-CCCc-eeecCCCCCCCccCCCCCccCCHHHHHHHHHHHHHHHHhCCCCCCE
Q 000509 1127 IPYIELNAQGRARPSIAQLYNWRYRDLG-DLPF-LVDVPDYNGRGESAPSPWFYQNEGEAEYVVSVYIYMRLLGYPANKI 1204 (1456)
Q Consensus 1127 ~p~i~L~~QYR~~PsIa~~~n~~yy~l~-dlp~-fidV~~~~g~~e~~~~~~S~~N~~EAe~vv~iv~~L~~~Gy~~~~I 1204 (1456)
...+.|+++|||+|.|.++.|..|.... ..+. ........|.-+-.. .......+++.|+..+..++..|++.++|
T Consensus 397 ~~~~~L~~NyRS~~~Iv~~~N~~f~~~~~~~~~~~~~~~~~~g~v~i~~--~~~~~~~~a~~ia~~I~~l~~~g~~~~dI 474 (910)
T PRK13909 397 QKVDNLDTNYRSAPLIVDFVNEVFKKKYKNYKTQYAEQHKSGGYVEVVE--VADESEELLEQLLQEIQFLLEKGIDPDDI 474 (910)
T ss_pred hhhcccccCCCCChHHHHHHHHHHHHHHHhhhhhhcccccCCCcEEEEE--CCCccHHHHHHHHHHHHHHHHcCCCcCCE
Confidence 2467899999999999999999875411 1000 000000001100000 00112346788888888888889999999
Q ss_pred EEecCCHHHHHHHHHHHHhc
Q 000509 1205 SILTTYNGQKLLIRDVINRQ 1224 (1456)
Q Consensus 1205 gILTpY~aQ~~lIr~~L~~r 1224 (1456)
+||++.+.|...|.+.|.+.
T Consensus 475 aILvR~~~~~~~l~~~L~~~ 494 (910)
T PRK13909 475 AILCWTNDDALEIKEFLQEQ 494 (910)
T ss_pred EEEEecCccHHHHHHHHHhc
Confidence 99999999988888888776
No 29
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=99.50 E-value=3.1e-12 Score=171.92 Aligned_cols=147 Identities=13% Similarity=0.133 Sum_probs=98.4
Q ss_pred CCCCEEEEecCCCCChHHH--HHHHHh------------CCCCCCCceecchhhhhhcCCcccHHHHHHH--cCCCeeec
Q 000509 1069 FKYDNLLMEESAQILEIET--FIPMLL------------NDRRMLPPVVKNMAFQKYSHMDQSLFTRFVR--LGIPYIEL 1132 (1456)
Q Consensus 1069 ~kfD~VIIDEAsQitE~Et--lIPLll------------~Dh~QLpPvV~s~~~~~~~~l~qSLFeRL~~--~g~p~i~L 1132 (1456)
.+|++|+|||+++....+. |-.+.. +|++| ++-.+.+-+..+|..... .....+.|
T Consensus 377 ~~~~~iLIDEfQDT~~~Q~~Il~~l~~~~~~~~~~lF~VGD~KQ--------SIY~FRgAD~~~f~~a~~~~~~~~~~~L 448 (1139)
T COG1074 377 EQYPHILIDEFQDTDPQQWRILSRLFAGFKAGNRTLFLVGDPKQ--------SIYRFRGADIFTFLEAASSEKAFARITL 448 (1139)
T ss_pred hcCCeEEeeccccCCHHHHHHHHHHHhcCCCCCCceEEecCchH--------HhhhhcCCChHHHHHHhhccccCceeec
Confidence 4799999999999887663 222211 18888 233345678888888887 56788999
Q ss_pred cccccCchhHHHHHHHHhccCC-----CCCc-------------------------eeecCCCCCCCccCCCCCccCCHH
Q 000509 1133 NAQGRARPSIAQLYNWRYRDLG-----DLPF-------------------------LVDVPDYNGRGESAPSPWFYQNEG 1182 (1456)
Q Consensus 1133 ~~QYR~~PsIa~~~n~~yy~l~-----dlp~-------------------------fidV~~~~g~~e~~~~~~S~~N~~ 1182 (1456)
++|||++|.+.+.+|..|.... ..+. ++.-++..+..+... ........
T Consensus 449 ~~N~RS~~~vl~avN~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-~~~~~~~~ 527 (1139)
T COG1074 449 ETNYRSTPELLNAVNALFKQAMFAYPGEIDYDPVAELGARNGSPGSVNGEPLPALKFWEEEDDWTAPENEE-DEREIADL 527 (1139)
T ss_pred ccccCCcHHHHHHHHHHHhhhhhhcCCCCCCchhhhhhcccCCCCCCCcccchhhhhhcCcccccCCCCch-hHHHHHHH
Confidence 9999999999999999987521 1111 111000000000000 00234456
Q ss_pred HHHHHHHHHHHHHH--------hCCCCCCEEEecCCHHHHHHHHHHHHhc
Q 000509 1183 EAEYVVSVYIYMRL--------LGYPANKISILTTYNGQKLLIRDVINRQ 1224 (1456)
Q Consensus 1183 EAe~vv~iv~~L~~--------~Gy~~~~IgILTpY~aQ~~lIr~~L~~r 1224 (1456)
||..|...+..+.. ..+++++|+||+.-+.+...|++.|+.+
T Consensus 528 ~a~~Ia~~L~~~~~~~~~~~~~r~i~~~DIaILVR~~~ea~~i~~aL~~~ 577 (1139)
T COG1074 528 EARQIAAWLRELIEGEAVLDGERPIRAGDIAVLVRSRNEAAAIERALKKA 577 (1139)
T ss_pred HHHHHHHHHHHHhhCCccccCCCCCChhheEEEeecchhHHHHHHHHHhc
Confidence 67777777777764 2478899999999999999999999888
No 30
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=99.48 E-value=6e-12 Score=169.29 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=89.9
Q ss_pred CCCCCEEEEecCCCCChHHH--HHHHHh----------CCCCCCCceecchhhhhhcCCcccHHHHHHHcCCCeeecccc
Q 000509 1068 GFKYDNLLMEESAQILEIET--FIPMLL----------NDRRMLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYIELNAQ 1135 (1456)
Q Consensus 1068 g~kfD~VIIDEAsQitE~Et--lIPLll----------~Dh~QLpPvV~s~~~~~~~~l~qSLFeRL~~~g~p~i~L~~Q 1135 (1456)
..+|++|+|||+++++..+. +-.|.. +|++|- .+.+ .+-+...|-.........+.|++|
T Consensus 375 ~~~y~~ilIDEfQDT~~~Q~~il~~L~~~~~~~~l~~VGDpkQs-----IY~F---RGAd~~~~l~~~~~~~~~~~L~~N 446 (1181)
T PRK10876 375 RTRYPVAMIDEFQDTDPQQYRIFRRIYRHQPETALLLIGDPKQA-----IYAF---RGADIFTYMKARSEVSAHYTLDTN 446 (1181)
T ss_pred HhCCCEEEEECCccCCHHHHHHHHHHHcCCCCCeEEEEeCCccc-----cccC---CCCCchHHHHHHhccCCeeECCCC
Confidence 34899999999999988763 223321 188882 2222 233333333333222346899999
Q ss_pred ccCchhHHHHHHHHhccCCC------CCceeecCC--------C--CCCCcc---------CCCCCccCCHHHHHHHHHH
Q 000509 1136 GRARPSIAQLYNWRYRDLGD------LPFLVDVPD--------Y--NGRGES---------APSPWFYQNEGEAEYVVSV 1190 (1456)
Q Consensus 1136 YR~~PsIa~~~n~~yy~l~d------lp~fidV~~--------~--~g~~e~---------~~~~~S~~N~~EAe~vv~i 1190 (1456)
|||+++|++++|..|..... +| |..+.. + .|.... .+.........||+.|++-
T Consensus 447 yRS~~~Iv~~~N~lf~~~~~~~~~~~i~-~~~v~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~eA~~iA~~ 525 (1181)
T PRK10876 447 WRSAPGMVNSVNKLFSQTDDPFLFREIP-FIPVKAAGKNQALRFVVKGETQPAMKFWLMEGEGVGVGDYQQTMAQQCAAQ 525 (1181)
T ss_pred cCcCHHHHHHHHHHHhcccccccCCCCC-ccccccccccccccccccCCCCCceeeeecCCCccCcchHHHHHHHHHHHH
Confidence 99999999999999875321 11 111110 0 000000 0000011124577888887
Q ss_pred HHHHHHh---------------CCCCCCEEEecCCHHHHHHHHHHHHhcCC
Q 000509 1191 YIYMRLL---------------GYPANKISILTTYNGQKLLIRDVINRQCV 1226 (1456)
Q Consensus 1191 v~~L~~~---------------Gy~~~~IgILTpY~aQ~~lIr~~L~~r~~ 1226 (1456)
+..++.. ++++++|+||++.+.|...|++.|.++..
T Consensus 526 I~~ll~~g~~~~~~~~~~~~~r~~~~~DIAVLvRs~~~a~~i~~aL~~~gI 576 (1181)
T PRK10876 526 IRDWLQAGQRGEALLMNGDDSRPVRASDITVLVRSRQEAALIRDALTLLAI 576 (1181)
T ss_pred HHHHHhcccccceeeccCCCcCCCCcccEEEEEecCchHHHHHHHHHhCCC
Confidence 7766643 25678999999999999888887776643
No 31
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=99.44 E-value=3.4e-12 Score=163.95 Aligned_cols=156 Identities=21% Similarity=0.222 Sum_probs=104.6
Q ss_pred CCCCEEEEecCCCCChHHHH-HHHHhCCCCCCCceecchh--hhhhcCCcccHHHHHHHcC--CCeeeccccccCchhHH
Q 000509 1069 FKYDNLLMEESAQILEIETF-IPMLLNDRRMLPPVVKNMA--FQKYSHMDQSLFTRFVRLG--IPYIELNAQGRARPSIA 1143 (1456)
Q Consensus 1069 ~kfD~VIIDEAsQitE~Etl-IPLll~Dh~QLpPvV~s~~--~~~~~~l~qSLFeRL~~~g--~p~i~L~~QYR~~PsIa 1143 (1456)
.+|++|+|||.++...++.- +-++..++..+- +|.... +-.+.+-+...+.++.+.- .+.+.|.++||+.+.|.
T Consensus 212 ~rf~~iLvDE~QDtn~~Q~~ll~~la~~~~~l~-~VGD~dQsIY~frGA~~~ni~~f~~df~~~~~i~Le~NyRSt~~Il 290 (655)
T COG0210 212 ARFRYILVDEFQDTNPLQYELLKLLAGNAANLF-VVGDDDQSIYGFRGADPENILDFEKDFPAAKVIKLEQNYRSTPNIL 290 (655)
T ss_pred hhCCEEEEeCcCCCCHHHHHHHHHHhCCCCCEE-EEcCCccccceeCCCChHHHHHHHhhCCCCcEEEecCCCCCcHHHH
Confidence 47999999999999887643 333322222222 111111 1112344455555555432 57899999999999999
Q ss_pred HHHHHHhccC-CCCCc--eeecCCCCCCCccCCCCCccCCHHHHHHHHHHHHHHHHhC-CCCCCEEEecCCHHHHHHHHH
Q 000509 1144 QLYNWRYRDL-GDLPF--LVDVPDYNGRGESAPSPWFYQNEGEAEYVVSVYIYMRLLG-YPANKISILTTYNGQKLLIRD 1219 (1456)
Q Consensus 1144 ~~~n~~yy~l-~dlp~--fidV~~~~g~~e~~~~~~S~~N~~EAe~vv~iv~~L~~~G-y~~~~IgILTpY~aQ~~lIr~ 1219 (1456)
...|+..... ...+. +..+ .+.+.......+.....||..++..+..+...| .+.++|+|+...+.|...+.+
T Consensus 291 ~~An~~i~~n~~r~~k~l~~~~---~~~~~~~~~~~~~~~~~ea~~i~~~I~~l~~~~~~~~~d~aiL~R~n~~s~~~e~ 367 (655)
T COG0210 291 AAANKVIANNKKRQAKTLRTEV---EGSGEKVVLLLANDEEDEARWIASEIDALIEIGKVNYSDIAILYRTNAQSRLIEE 367 (655)
T ss_pred HHHHHHHhcCCccCCCcceecc---CCCCCCceEEeCCChHHHHHHHHHHHHHHHHcCCCChhhEEEEEecCcchHHHHH
Confidence 9999887631 11222 2221 233444444445567889999999999998888 899999999999999999999
Q ss_pred HHHhcCCCC
Q 000509 1220 VINRQCVPY 1228 (1456)
Q Consensus 1220 ~L~~r~~~~ 1228 (1456)
.+.....+.
T Consensus 368 ~l~~~~ipy 376 (655)
T COG0210 368 ALRAAGIPY 376 (655)
T ss_pred HHHHcCCCe
Confidence 999765543
No 32
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=99.42 E-value=5.2e-13 Score=146.59 Aligned_cols=64 Identities=25% Similarity=0.353 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHhccC--CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHH
Q 000509 819 RFTPTQVGAIISGIQ--PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKI 884 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~--~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL 884 (1456)
+||+.|.+|+...+. .++++|+||||||||+++..++..+-.. +.+|+++||||.|+++|.+++
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~--g~~v~~~apT~~Aa~~L~~~~ 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA--GKRVIGLAPTNKAAKELREKT 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT--T--EEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC--CCeEEEECCcHHHHHHHHHhh
Confidence 489999999999874 3599999999999999999888777665 799999999999999987663
No 33
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=99.36 E-value=1e-10 Score=158.47 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=45.2
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHc-CCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHN-CPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~-~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
.-.+|.+++|||||++++..+..++.. .+..+||++|+||.|+.++.+||.+
T Consensus 11 ~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~ 63 (1141)
T TIGR02784 11 TSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFD 63 (1141)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHH
Confidence 346799999999999999999988755 3458999999999999999888865
No 34
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=99.26 E-value=1.6e-10 Score=157.34 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=54.2
Q ss_pred CCCCCHHHHHHHHhccC--CCcEEEEcCCCCChHHHHHHHHHHHHH--cCCCCcEEEEecCHHHHHHHH
Q 000509 817 SVRFTPTQVGAIISGIQ--PGLTMVVGPPGTGKTDTAVQILNVLYH--NCPSQRTLIITHSNQALNDLF 881 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~--~gltLI~GPPGTGKT~tia~iI~~L~~--~~p~~rILIvA~SN~AlD~L~ 881 (1456)
...||+.|.+||..++. .++++|+|+||||||+++..++..+-. ...+.+|+.+|||+.|+..|-
T Consensus 965 ~~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 965 MEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHH
Confidence 46799999999999885 479999999999999999888776643 223568999999999998764
No 35
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=99.25 E-value=9.3e-11 Score=157.67 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHhccC--CCcEEEEcCCCCChHHHHHHHHHHHHH--cCCCCcEEEEecCHHHHHHHH
Q 000509 818 VRFTPTQVGAIISGIQ--PGLTMVVGPPGTGKTDTAVQILNVLYH--NCPSQRTLIITHSNQALNDLF 881 (1456)
Q Consensus 818 v~Ln~sQ~eAI~sal~--~gltLI~GPPGTGKT~tia~iI~~L~~--~~p~~rILIvA~SN~AlD~L~ 881 (1456)
..||+.|.+||..++. .++++|+|+||||||+++..++..+-. ...+.+|+.+|||+.|+..|-
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHH
Confidence 5899999999999884 589999999999999998777665432 224578999999999998884
No 36
>PF13245 AAA_19: Part of AAA domain
Probab=99.17 E-value=5e-11 Score=111.40 Aligned_cols=59 Identities=32% Similarity=0.525 Sum_probs=52.3
Q ss_pred HHHHhccC-CCcEEEEcCCCCChHHHHHHHHHHHHHc--CCCCcEEEEecCHHHHHHHHHHH
Q 000509 826 GAIISGIQ-PGLTMVVGPPGTGKTDTAVQILNVLYHN--CPSQRTLIITHSNQALNDLFEKI 884 (1456)
Q Consensus 826 eAI~sal~-~gltLI~GPPGTGKT~tia~iI~~L~~~--~p~~rILIvA~SN~AlD~L~ekL 884 (1456)
+||..++. +++.+|+||||||||+++++++..++.. .++++||++|+||.|+++|.+++
T Consensus 1 ~av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 1 EAVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CHHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 46776666 8899999999999999999999999853 44789999999999999999998
No 37
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=99.15 E-value=6.3e-10 Score=128.93 Aligned_cols=66 Identities=30% Similarity=0.408 Sum_probs=57.9
Q ss_pred CCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcC--CCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 820 FTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNC--PSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 820 Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~--p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
||++|.++|.. ..+.++|.|+||||||+|+++.+.+++... +..+||++|+||.|++++.++|.+.
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~ 68 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIREL 68 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHh
Confidence 78999999998 678899999999999999999999998775 5689999999999999999999874
No 38
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=99.12 E-value=3.7e-10 Score=134.89 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=43.2
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
.+.+|.|.||||||.++..++..+.....+.++++++++..-.+.+.+.+.+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhh
Confidence 3689999999999999999999994444578999999998888877766654
No 39
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=99.08 E-value=7.4e-11 Score=131.80 Aligned_cols=49 Identities=27% Similarity=0.259 Sum_probs=40.6
Q ss_pred eeecccCCCCccCCEEEEEecccCCccccc-cchhhHHHHhhhhccEEEE
Q 000509 1236 KVTTVDKFQGQQNDFILLSLVRTRFVGHLR-DVRRLVVAMSRARLGLYVF 1284 (1456)
Q Consensus 1236 ~V~TVD~fQG~E~DvVIlSlVRs~~~GfL~-d~rRLNVAlSRAR~~LiIv 1284 (1456)
.+.|++.+||.|+|.|++-.........+. +.++++||+||||..|+|+
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~~~~~~~~~~~~~~~~~VALTR~~~~l~i~ 233 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLLSDTDNELYSESRNHLYVALTRHTKSLVIL 233 (234)
T ss_pred ceechHHcceEEeCCEEEEECCCcccccccCCcccEEEEccccccEEEEE
Confidence 599999999999999888666544434444 6899999999999999986
No 40
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=99.03 E-value=2.7e-09 Score=149.25 Aligned_cols=65 Identities=22% Similarity=0.194 Sum_probs=52.6
Q ss_pred CCCCCHHHHHHHHhccC--CCcEEEEcCCCCChHHHHHHHHHHHHHcC--CCCcEEEEecCHHHHHHHH
Q 000509 817 SVRFTPTQVGAIISGIQ--PGLTMVVGPPGTGKTDTAVQILNVLYHNC--PSQRTLIITHSNQALNDLF 881 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~--~gltLI~GPPGTGKT~tia~iI~~L~~~~--p~~rILIvA~SN~AlD~L~ 881 (1456)
...||+.|.+||..++. .++++|+|+||||||+++..++..+...+ .+.+|+.+|||+.|+..|-
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHH
Confidence 46899999999998773 47999999999999999966554443222 3678999999999998884
No 41
>COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
Probab=98.78 E-value=4.4e-08 Score=127.14 Aligned_cols=69 Identities=25% Similarity=0.343 Sum_probs=57.3
Q ss_pred CCCCCCCCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHH
Q 000509 812 QPRQNSVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFE 882 (1456)
Q Consensus 812 ~p~~n~v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~e 882 (1456)
.|....+++.+.|.+|+..++.....+|.|+||||||+++..++..+..- +..+++.+++-.|+-.+.+
T Consensus 312 ~~~~~~~~~~~~q~~a~~vl~~de~smlt~~~~~~~~~~~~~~~~l~~~~--~~~~l~aa~tG~a~~~l~e 380 (696)
T COG0507 312 VPAKVKLRLSLEQKEALDVLVVDEVSMLTGGPGTGKTTAIKAIARLIKEG--DGDQLLAAPTGKAAKRLNE 380 (696)
T ss_pred cccccCCCcCcccHHHHHHHhcCCeeEEeccCCcchHHHHHHHHHHHHhc--CCcEEeechhhHHHHHHHH
Confidence 44555689999999999999999999999999999999999888766544 4559999999888765543
No 42
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=98.64 E-value=1.4e-07 Score=111.81 Aligned_cols=108 Identities=11% Similarity=0.058 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCCCEEEecCCH----HHHHHHHHHHHhcCCC----------CCCCC--CCceeecccCC
Q 000509 1180 NEGEAEYVVSVYIYMRLLGYPANKISILTTYN----GQKLLIRDVINRQCVP----------YPFIG--PPSKVTTVDKF 1243 (1456)
Q Consensus 1180 N~~EAe~vv~iv~~L~~~Gy~~~~IgILTpY~----aQ~~lIr~~L~~r~~~----------~~~~g--~~v~V~TVD~f 1243 (1456)
-..|+..++.-+..++.-+..+++|.||.+-. +-...+.+-|..+... ++.|. ..|.+++|.+.
T Consensus 453 ~~deivwi~~qI~~~~edeLe~dDIiVi~lDp~t~Rgy~~~li~sL~s~giq~hl~gvd~s~e~~f~~dgkvtis~IyrA 532 (660)
T COG3972 453 GPDEIVWIIIQIKEFREDELEQDDIIVIFLDPGTMRGYIYELIHSLKSKGIQQHLWGVDISHETKFKQDGKVTISRIYRA 532 (660)
T ss_pred cchhhHHHHHHHHHhcccccccCCEEEEecCCccccchHHHHHHHHHHhhhhhhccccCcccccccccCceEEeeeehhc
Confidence 45677777776666666788899999887633 3344444444444321 12222 14789999999
Q ss_pred CCccCCEEEEEecccCCccccccchhhHHHHhhhhccEEEEech
Q 000509 1244 QGQQNDFILLSLVRTRFVGHLRDVRRLVVAMSRARLGLYVFCRR 1287 (1456)
Q Consensus 1244 QG~E~DvVIlSlVRs~~~GfL~d~rRLNVAlSRAR~~LiIvGn~ 1287 (1456)
.|.|+.+|+.-.+..=+.|.-...|-+.+||||.|.=+-|+|--
T Consensus 533 KGnEapfV~aL~a~~ls~~la~~RN~LfTamTRSkawvrv~glg 576 (660)
T COG3972 533 KGNEAPFVYALGAAYLSTGLADWRNILFTAMTRSKAWVRVVGLG 576 (660)
T ss_pred cCCCCcEEEEehhhhhCccchhHHhHHHHHHhhhhhhhhhhccC
Confidence 99999999997776555666777789999999999988888843
No 43
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=98.51 E-value=1.9e-06 Score=121.36 Aligned_cols=67 Identities=21% Similarity=0.299 Sum_probs=57.6
Q ss_pred CCCCCCCHHHHHHHHhccC--CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHH
Q 000509 815 QNSVRFTPTQVGAIISGIQ--PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEK 883 (1456)
Q Consensus 815 ~n~v~Ln~sQ~eAI~sal~--~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ek 883 (1456)
...+.||+.|.+||..++. .++.+|+|+||||||+++..++..+-.. +.+|.++|||..|+..|.+.
T Consensus 425 ~~~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~--G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 425 LSEFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQ--GYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred cccCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHH
Confidence 3467899999999998875 4899999999999999999888766544 78999999999999888654
No 44
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=98.42 E-value=4.5e-07 Score=106.26 Aligned_cols=95 Identities=21% Similarity=0.270 Sum_probs=62.2
Q ss_pred eeccccccCchhHHHHHHHHhcc-----C-CCCCc-eeecCCCCCCCccCCCCCccCCHHHHHHHHHHHHHHHHhCCCCC
Q 000509 1130 IELNAQGRARPSIAQLYNWRYRD-----L-GDLPF-LVDVPDYNGRGESAPSPWFYQNEGEAEYVVSVYIYMRLLGYPAN 1202 (1456)
Q Consensus 1130 i~L~~QYR~~PsIa~~~n~~yy~-----l-~dlp~-fidV~~~~g~~e~~~~~~S~~N~~EAe~vv~iv~~L~~~Gy~~~ 1202 (1456)
+.|+++|||+|.|.+++|..+.. . ...+. .....+ +.+.......+.....|+++|+.-+..+...|++++
T Consensus 1 i~L~~NyRS~~~Iv~~~N~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~e~~~i~~~I~~l~~~~~~~~ 78 (351)
T PF13361_consen 1 ITLTTNYRSSPNIVDFANRLFENILPNDNKDRYEKEIQSAEN--SEDGKISIIEFDNEEEEAEYIAEEIKELIRNGIPPS 78 (351)
T ss_dssp EEE-EESSS-HHHHHHHHHHHCC---TTSSSSCCCEEEESST--CEESSEEEEEESSHHHHHHHHHHHHHHHHHTTS-GG
T ss_pred CCCCCCcCcCHHHHHHHHHHHHhhhhhhccchhhhhhccccc--cccCCceeeccCCHHHHHHHHHHHHHHHhhcCCCcc
Confidence 57999999999999999999922 1 11111 222111 110111111233566788999999988887799999
Q ss_pred CEEEecCCHHHHHHHHHHHHhcCC
Q 000509 1203 KISILTTYNGQKLLIRDVINRQCV 1226 (1456)
Q Consensus 1203 ~IgILTpY~aQ~~lIr~~L~~r~~ 1226 (1456)
+|+||+..+.|...|.+.|...+.
T Consensus 79 diAVL~R~~~~~~~i~~~L~~~gI 102 (351)
T PF13361_consen 79 DIAVLVRTNSQIKEIEDALKEAGI 102 (351)
T ss_dssp GEEEEESSGGHHHHHHHHHHHTTS
T ss_pred cEEEEEECchhHHHHHHHHhhhcc
Confidence 999999999988888887766543
No 45
>KOG1804 consensus RNA helicase [RNA processing and modification]
Probab=98.27 E-value=6.2e-07 Score=114.10 Aligned_cols=247 Identities=18% Similarity=0.120 Sum_probs=164.4
Q ss_pred CcEEEEcchhHhhhhhHHhhcCCCCCEEEEecCCCCChHHHHHHHHhC----------CCCCCCceecchhhhhhcCCcc
Q 000509 1047 AKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPMLLN----------DRRMLPPVVKNMAFQKYSHMDQ 1116 (1456)
Q Consensus 1047 a~IIa~T~t~aa~~~~~l~~lg~kfD~VIIDEAsQitE~EtlIPLll~----------Dh~QLpPvV~s~~~~~~~~l~q 1116 (1456)
.+|+++|..........-... ..+.+++.|||+|.++++.+.||++. |+.|+.|.+.+...... .+.
T Consensus 243 Hrv~~~~~~~s~~~~~l~~~~-~~~t~~~~~eaae~~~~~~l~P~~~~~~~~~~~L~~~~~ql~~~l~s~~~~~~-~~~- 319 (775)
T KOG1804|consen 243 HRVVVVTLSQSQYLTPLGLPV-GFFTHILLDEAAQAMECELLMPLALPSSGTRIVLAGPHLQLTPFLNSVAREEQ-ALH- 319 (775)
T ss_pred cceeEeecceeecccccCCCC-CceeeeeHHHHHhcCCceeecccccCCCCceeeecccccccccchhhhhhhhh-hhh-
Confidence 677777754433211111111 24789999999999999999998766 99999998876554431 121
Q ss_pred cHHHHHHH----cCCCeeeccccccCchhHHHHHHHHhccCCCCCc----------------eeecCCCCCCCccCCCCC
Q 000509 1117 SLFTRFVR----LGIPYIELNAQGRARPSIAQLYNWRYRDLGDLPF----------------LVDVPDYNGRGESAPSPW 1176 (1456)
Q Consensus 1117 SLFeRL~~----~g~p~i~L~~QYR~~PsIa~~~n~~yy~l~dlp~----------------fidV~~~~g~~e~~~~~~ 1176 (1456)
.+-.|+.. .|.|-+-.+.+||++-.|..|.+..+|.+...|+ |.... +......+..
T Consensus 320 ~~~~~~~~~y~~~~p~~~g~~~n~~~a~~~v~~~~~~~~il~~~p~~a~~k~~~~rl~~p~~~~~~~---~~~~~~~~~~ 396 (775)
T KOG1804|consen 320 LLLCRLPEPYIVFGPPGTGKTENYREAIAIVSFTSPHFYILVCAPSNASGKQPAHRLHYPLTFSTAR---GEDVRAKSST 396 (775)
T ss_pred hcccccccccccccCCCcCCccchHHHHHHHHhcchHHHhhcccccccccccccccccccccccccc---cccccccchh
Confidence 22222222 2456778899999999999999999887644443 33322 2222233344
Q ss_pred ccCCHHHHHHHHHHHHHHHHhC-----C-CCCCEEEecCCHHHHHHHHHHHHhcCCCCCCCCCCceeecccCCCCccCC-
Q 000509 1177 FYQNEGEAEYVVSVYIYMRLLG-----Y-PANKISILTTYNGQKLLIRDVINRQCVPYPFIGPPSKVTTVDKFQGQQND- 1249 (1456)
Q Consensus 1177 S~~N~~EAe~vv~iv~~L~~~G-----y-~~~~IgILTpY~aQ~~lIr~~L~~r~~~~~~~g~~v~V~TVD~fQG~E~D- 1249 (1456)
...|..|+..++.-++.+.... + ....+|++++|..|+..++.+|.... ++.+...--.+|.+.-
T Consensus 397 ~~~~~~~v~~~~~~~e~~~~~~~~~i~i~t~~sag~~~~~g~~v~~f~hil~DeA--------g~stEpe~lv~i~~~~~ 468 (775)
T KOG1804|consen 397 AWYNNAEVSEVVEKVEELRKVWPYRWGITTCTSAGCVTSYGFQVGHFRHILVDEA--------GVSTEPELLVPGKQFRQ 468 (775)
T ss_pred HHhhhHHHHHHHHHHHHHhhccceEEEEeeccceeeeecccccccceeeeeeccc--------ccccCcccccccccccc
Confidence 5677788877787777777442 1 23468999999999999999985431 1334444445565555
Q ss_pred --EEEEEecccC---------CccccccchhhHHHHhhhhccEEEEechhhhhhhccchHHHHHHHcCc
Q 000509 1250 --FILLSLVRTR---------FVGHLRDVRRLVVAMSRARLGLYVFCRRSLFEQCYELQPTFRLLLQRP 1307 (1456)
Q Consensus 1250 --vVIlSlVRs~---------~~GfL~d~rRLNVAlSRAR~~LiIvGn~~~l~~~~~~~~~~~~Ll~~~ 1307 (1456)
.|++|+..+- .-.+.-+...++-|++||-...-++|+.+.+....-++.+|.+..-.+
T Consensus 469 ~~~vvLsgdh~Qlgpv~~s~~A~~~gl~rsLler~l~r~~~~~~~~g~~~~l~~t~l~rnyrshp~il~ 537 (775)
T KOG1804|consen 469 PFQVVLSGDHTQLGPVSKSARAEELGLDRSLLERALTRAQSLVAVVGDYNALCSTGLCRNYRSHPIILC 537 (775)
T ss_pred eeEEEEccCcccccccccchhhhhhcccHHHHHHHHHHHhhccccCCCcccccchhhHHHHhhhhHhhh
Confidence 5677666542 112333567789999999999999999999988877788887765443
No 46
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.26 E-value=5.5e-06 Score=82.94 Aligned_cols=51 Identities=20% Similarity=0.353 Sum_probs=45.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 837 TMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.+|.||||||||+++...+..+.......++++++|++..+++..+.+...
T Consensus 3 ~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~ 53 (144)
T cd00046 3 VLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKEL 53 (144)
T ss_pred EEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHH
Confidence 689999999999999999999887666789999999999999988777643
No 47
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.23 E-value=2.8e-06 Score=93.96 Aligned_cols=57 Identities=25% Similarity=0.187 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCH
Q 000509 818 VRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSN 874 (1456)
Q Consensus 818 v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN 874 (1456)
.+.|+.|..++.+.+...++++.||+|||||.++++.+..++.+..-.||+++-+.-
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v 59 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPV 59 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S-
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 357999999999999999999999999999999999999998885556777765544
No 48
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.19 E-value=7.8e-05 Score=91.78 Aligned_cols=69 Identities=22% Similarity=0.185 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcC-----CCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 819 RFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNC-----PSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~-----p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.+++-|.+||..++...=.++++|+|||||.+....+...+..+ ...++||++||...+.++.+.+..+
T Consensus 23 ~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l 96 (434)
T PRK11192 23 RPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQAREL 96 (434)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHH
Confidence 46789999999999777799999999999987654443333222 2358999999999999998876653
No 49
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.15 E-value=8.1e-06 Score=86.91 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=63.4
Q ss_pred CCCCCHHHHHHHHhccCC-CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 817 SVRFTPTQVGAIISGIQP-GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~~-gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
...+++.|.+++...... ...+|.||+|||||.+++..+...+.+.+..++|+++|++.++.++..++.+.
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 456899999999998877 88999999999999999988888887766789999999999999999888765
No 50
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.14 E-value=0.00019 Score=89.06 Aligned_cols=70 Identities=14% Similarity=0.113 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHc-CCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 818 VRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHN-CPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 818 v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~-~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
..+||-|.+||...+...-.+|++|.|||||.+....+...+.. ....++||++||...++++.+.+..+
T Consensus 25 ~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 95 (460)
T PRK11776 25 TEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRL 95 (460)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 35789999999999987789999999999997655444333332 22347999999999999988776543
No 51
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.06 E-value=0.00016 Score=93.02 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHH-HHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 818 VRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQIL-NVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 818 v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI-~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
..+++-|.+||...+...-.++++|.|||||.+....+ ..+.......++||++||...+.|+.+.+..
T Consensus 27 ~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~ 96 (629)
T PRK11634 27 EKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTD 96 (629)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 35788999999998877779999999999998765433 3333333456899999999999998777654
No 52
>PRK10536 hypothetical protein; Provisional
Probab=98.05 E-value=5.7e-05 Score=86.04 Aligned_cols=58 Identities=16% Similarity=0.071 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHH
Q 000509 817 SVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQ 875 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~ 875 (1456)
-.+.|..|..++.......+++|.||+|||||+++.++....+.+. .-+.++++.++.
T Consensus 57 i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~-~~~kIiI~RP~v 114 (262)
T PRK10536 57 ILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPVL 114 (262)
T ss_pred ccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC-CeeEEEEeCCCC
Confidence 3468999999999888888999999999999999999988665442 344444555443
No 53
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.04 E-value=0.00027 Score=87.79 Aligned_cols=70 Identities=24% Similarity=0.160 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcC-------CCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 818 VRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNC-------PSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 818 v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~-------p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
..+|+-|.+||...+...=.+|++|.|||||.+....+...+... ...++||++||...+.++.+.+.+.
T Consensus 22 ~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 22 REPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 457899999999988766689999999999987655444433221 1237999999999999998877653
No 54
>PHA02558 uvsW UvsW helicase; Provisional
Probab=97.99 E-value=4.4e-05 Score=95.80 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=59.6
Q ss_pred CCCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 817 SVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.+.+.+.|.+||..++..+-.+++.|.|+|||.+++.++..++... ..++||++||...++|..+++.+.
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~-~~~vLilvpt~eL~~Q~~~~l~~~ 181 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENY-EGKVLIIVPTTSLVTQMIDDFVDY 181 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcC-CCeEEEEECcHHHHHHHHHHHHHh
Confidence 4778999999999998777789999999999999887776666552 349999999999999999988764
No 55
>PTZ00424 helicase 45; Provisional
Probab=97.94 E-value=0.00022 Score=86.61 Aligned_cols=68 Identities=19% Similarity=0.144 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHc-CCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 819 RFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHN-CPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~-~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
.+|+-|.+||...+...=++|++|+|||||.+....+...+.. ..+.++|+++|+...+.++.+.+..
T Consensus 50 ~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 118 (401)
T PTZ00424 50 KPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLA 118 (401)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHH
Confidence 5899999999999877778999999999998876655555432 2356899999999988887766554
No 56
>TIGR02773 addB_Gpos ATP-dependent nuclease subunit B. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function.
Probab=97.93 E-value=0.0009 Score=92.08 Aligned_cols=146 Identities=17% Similarity=0.053 Sum_probs=82.1
Q ss_pred CCCEEEEecCCCCChHHH-HHHHHhC---------CCCCCCceecchhhhhhcCCcccHHHHHH----HcCC---Ceeec
Q 000509 1070 KYDNLLMEESAQILEIET-FIPMLLN---------DRRMLPPVVKNMAFQKYSHMDQSLFTRFV----RLGI---PYIEL 1132 (1456)
Q Consensus 1070 kfD~VIIDEAsQitE~Et-lIPLll~---------Dh~QLpPvV~s~~~~~~~~l~qSLFeRL~----~~g~---p~i~L 1132 (1456)
...+|+|||.+..+..+. +|-.+.. |..|-. ..........+....|.++. ..++ +.+.+
T Consensus 196 ~~~~I~VDeFqdf~~~Q~~lI~~L~~~~~~v~Vv~d~Dq~~---~~~~~~~lf~~~~~~~~~l~~~~~~~~~~~~~~i~~ 272 (1158)
T TIGR02773 196 KGAEIYIDGFHSFTPQEYSVIGALMKKAKKVTVTLTLDGPK---SLEDELSLFRATSETYYRLKELAKELGIEVEEPIFL 272 (1158)
T ss_pred CCCEEEEccCCCCCHHHHHHHHHHHHhCCcEEEEEEeCCcc---ccCCccccchhHHHHHHHHHHHHHHcCCCccccccc
Confidence 357999999999998773 3333332 333320 00000011112122233332 2232 23445
Q ss_pred cccccC--chhHHHHHHHHhccCCCCCceeecCCCCCCCccCCCCCccCCHHHHHHHHHHHHHHHHh-CCCCCCEEEecC
Q 000509 1133 NAQGRA--RPSIAQLYNWRYRDLGDLPFLVDVPDYNGRGESAPSPWFYQNEGEAEYVVSVYIYMRLL-GYPANKISILTT 1209 (1456)
Q Consensus 1133 ~~QYR~--~PsIa~~~n~~yy~l~dlp~fidV~~~~g~~e~~~~~~S~~N~~EAe~vv~iv~~L~~~-Gy~~~~IgILTp 1209 (1456)
..+++. .+.|..+....+.. ... ...+.+..........-..|+++|+.-+..+... |++.++|+||++
T Consensus 273 ~~~~~~~~~~~l~~Lek~l~~~-~~~-------~~~~~~~~I~i~~~~~~~~Eae~va~~I~~l~~~~g~~~~DIAVL~R 344 (1158)
T TIGR02773 273 NEYRPNKKNKELAHLEKQFDAR-PFN-------AYIEEDGSISIFEANNRRAEVEGVARQILRLTRDKQYRYQDIAILTR 344 (1158)
T ss_pred ccccCCCCCHHHHHHHHHHhhC-CCC-------CCCCCCCCeEEEEcCCHHHHHHHHHHHHHHHHHcCCCChhheEEEeC
Confidence 555553 67777776655532 100 0011111110111123457999999988888776 999999999999
Q ss_pred C-HHHHHHHHHHHHhcCC
Q 000509 1210 Y-NGQKLLIRDVINRQCV 1226 (1456)
Q Consensus 1210 Y-~aQ~~lIr~~L~~r~~ 1226 (1456)
- +.+...|..+|.+...
T Consensus 345 ~~~~y~~~i~~~f~~~~I 362 (1158)
T TIGR02773 345 DLEDYAKLVEAVFSDYEI 362 (1158)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 9 9999999999988644
No 57
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.92 E-value=1.8e-05 Score=84.28 Aligned_cols=65 Identities=23% Similarity=0.336 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHHhccC-------CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 818 VRFTPTQVGAIISGIQ-------PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 818 v~Ln~sQ~eAI~sal~-------~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
+.|.+.|.+||..... .+..+|+||+|||||.+++.++..+.. +++++||+..-+++..+.+...
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----~~l~~~p~~~l~~Q~~~~~~~~ 73 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----KVLIVAPNISLLEQWYDEFDDF 73 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----ceeEecCHHHHHHHHHHHHHHh
Confidence 5688999999988772 688999999999999999998888875 9999999999999999888543
No 58
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=97.90 E-value=8e-05 Score=92.05 Aligned_cols=66 Identities=23% Similarity=0.317 Sum_probs=57.3
Q ss_pred CCCCCHHHHHHHHhccC----CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 817 SVRFTPTQVGAIISGIQ----PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~----~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.+.|.+.|.+|+.+... .+-.+|+-|+|+|||.+++.++..+. .++||++|+...++|-.+++.+.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~-----~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK-----RSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc-----CCEEEEECcHHHHHHHHHHHHHh
Confidence 46789999999998886 88899999999999999999987774 34999999999999988776643
No 59
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.82 E-value=0.0017 Score=79.98 Aligned_cols=69 Identities=19% Similarity=0.118 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHH-HHHHcC-------CCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 819 RFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILN-VLYHNC-------PSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~-~L~~~~-------p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.+|+-|.+||-..++..=.++++|.|||||.+....+. .+.... .+.++||++||...+.++.+.+..+
T Consensus 30 ~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l 106 (423)
T PRK04837 30 NCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPL 106 (423)
T ss_pred CCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHH
Confidence 56899999999998877789999999999987654443 333221 1357999999999999987766543
No 60
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=97.81 E-value=7e-05 Score=79.15 Aligned_cols=67 Identities=25% Similarity=0.269 Sum_probs=57.8
Q ss_pred CHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 821 TPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 821 n~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
||.|.+++....+..-.+|.||+|+|||.++...+...+.+....++++++|+...+++..+.+.+.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~ 67 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKF 67 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccc
Confidence 6889999999887777999999999999999977777666544569999999999999999998775
No 61
>PF13538 UvrD_C_2: UvrD-like helicase C-terminal domain; PDB: 1W36_G 3K70_G 3DMN_A 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.73 E-value=2e-05 Score=77.38 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=40.0
Q ss_pred CceeecccCCCCccCCEEEEEecccCCccccccchhhHHHHhhhhccEEEE
Q 000509 1234 PSKVTTVDKFQGQQNDFILLSLVRTRFVGHLRDVRRLVVAMSRARLGLYVF 1284 (1456)
Q Consensus 1234 ~v~V~TVD~fQG~E~DvVIlSlVRs~~~GfL~d~rRLNVAlSRAR~~LiIv 1284 (1456)
.+.+.|+|++||.|+|.||+...... ..-....+.++||+||||+.|+||
T Consensus 55 ~~~~~Tih~akGle~d~V~v~~~~~~-~~~~~~~~~lYva~TRA~~~L~iv 104 (104)
T PF13538_consen 55 HAYAMTIHKAKGLEFDAVIVVDPDSS-NFDELSRRLLYVAITRAKHELYIV 104 (104)
T ss_dssp CCSEEETGGCTT--EEEEEEEEGGGG-SGCGCHHHHHHHHHTTEEEEEEEE
T ss_pred cEEEEEhHHhcCccccEEEEEcCCcc-cCCchhhccEEeeHhHhhhhhCCC
Confidence 58899999999999999999888765 222345677999999999999987
No 62
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.65 E-value=0.00052 Score=89.20 Aligned_cols=68 Identities=15% Similarity=0.238 Sum_probs=59.3
Q ss_pred CCCCCHHHHHHHHhccC---CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 817 SVRFTPTQVGAIISGIQ---PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~---~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
+..||+.|.+|+..... ....++.||+|||||.+...++...+.. +.++||++|+..-++++.+++.+
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--g~~vLvLvPt~~L~~Q~~~~l~~ 212 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--GKQALVLVPEIALTPQMLARFRA 212 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHH
Confidence 46799999999988765 4679999999999999998888777765 78999999999999999988875
No 63
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.62 E-value=0.0012 Score=84.20 Aligned_cols=70 Identities=20% Similarity=0.204 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHH-HHHHcC-------CCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 818 VRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILN-VLYHNC-------PSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 818 v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~-~L~~~~-------p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
..+|+-|.++|-.++...=.++++|.|||||.+....+. .+.... ...++||++||...+.++.+.+.++
T Consensus 30 ~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l 107 (572)
T PRK04537 30 TRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKF 107 (572)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 457899999999999877799999999999987655443 343321 1358999999999999998877654
No 64
>PTZ00110 helicase; Provisional
Probab=97.60 E-value=0.0029 Score=80.48 Aligned_cols=70 Identities=14% Similarity=0.123 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHH-HHHHHHHc-----CCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 818 VRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQ-ILNVLYHN-----CPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 818 v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~-iI~~L~~~-----~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
..+|+-|.+||-.+++..=.++++|.|||||.+..- ++..+... ..+..+||++||...+.++.+.+.++
T Consensus 151 ~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~ 226 (545)
T PTZ00110 151 TEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKF 226 (545)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHH
Confidence 358999999999999777789999999999986432 33333322 12457999999999999988777654
No 65
>PRK01172 ski2-like helicase; Provisional
Probab=97.58 E-value=0.00038 Score=90.59 Aligned_cols=69 Identities=17% Similarity=0.144 Sum_probs=56.6
Q ss_pred CCCCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 816 NSVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 816 n~v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
+.+.|++-|.+|+....+..-.+|.+|.|||||.++...+...+.. +.++++++|+..-+++.++.+.+
T Consensus 19 ~~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--~~k~v~i~P~raLa~q~~~~~~~ 87 (674)
T PRK01172 19 NDFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--GLKSIYIVPLRSLAMEKYEELSR 87 (674)
T ss_pred CCCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--CCcEEEEechHHHHHHHHHHHHH
Confidence 3567999999999988777779999999999999877666555544 67999999999888888777653
No 66
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=97.56 E-value=0.0028 Score=80.15 Aligned_cols=68 Identities=18% Similarity=0.185 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHH-HHHHHHHc-------CCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 819 RFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQ-ILNVLYHN-------CPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~-iI~~L~~~-------~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
.+|+-|.+||..++...=.++.+|.|||||.+..- ++..+... ..+.++||++||..-+.++.+.+..
T Consensus 143 ~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~ 218 (518)
T PLN00206 143 FPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKV 218 (518)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 56899999999999877899999999999976433 33333321 1346899999999998887665543
No 67
>PRK13767 ATP-dependent helicase; Provisional
Probab=97.55 E-value=0.002 Score=86.22 Aligned_cols=68 Identities=24% Similarity=0.260 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHH-HHHHHc------CCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 819 RFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQIL-NVLYHN------CPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI-~~L~~~------~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
.||+-|.+|+...+...-++|+.|.|||||..+...+ ..++.. ..+-++|+++|+...++++..++.+
T Consensus 32 ~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 32 TFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 4899999999988877789999999999998766543 344432 1234699999999999998877653
No 68
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.52 E-value=0.00013 Score=88.08 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHhc------cCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHH
Q 000509 819 RFTPTQVGAIISG------IQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDL 880 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sa------l~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L 880 (1456)
.||++|.+++... ..+....|.||+|||||+++.+++..+-. .+..+++||+|-.|+-.+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~--~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS--RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc--ccceEEEecchHHHHHhc
Confidence 4899999997666 46778899999999999999998887644 378899999999998655
No 69
>PRK13766 Hef nuclease; Provisional
Probab=97.38 E-value=0.0014 Score=86.83 Aligned_cols=69 Identities=22% Similarity=0.266 Sum_probs=58.2
Q ss_pred CCCCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 816 NSVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 816 n~v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
+.+..-+.|.+++..++..+ ++|+.|.|+|||.++..++..+++ .++.++|+++||...+++..+.+.+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~n-~lv~~ptG~GKT~~a~~~i~~~l~-~~~~~vLvl~Pt~~L~~Q~~~~~~~ 80 (773)
T PRK13766 12 NTIEARLYQQLLAATALKKN-TLVVLPTGLGKTAIALLVIAERLH-KKGGKVLILAPTKPLVEQHAEFFRK 80 (773)
T ss_pred CcCCccHHHHHHHHHHhcCC-eEEEcCCCccHHHHHHHHHHHHHH-hCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 55677789999998888664 799999999999988888887774 4678999999999999888877765
No 70
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=97.37 E-value=0.0015 Score=89.02 Aligned_cols=70 Identities=19% Similarity=0.124 Sum_probs=57.0
Q ss_pred CCCCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 816 NSVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 816 n~v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
....+++-|..++...+...-.++++|+|||||.++.-++..+.. .+.++||++||..-+.|+.+.+.++
T Consensus 75 ~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~~--~g~~vLIL~PTreLa~Qi~~~l~~l 144 (1171)
T TIGR01054 75 VGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLAK--KGKRCYIILPTTLLVIQVAEKISSL 144 (1171)
T ss_pred cCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEeCHHHHHHHHHHHHHHH
Confidence 345688999999999887777889999999999866555544443 3789999999999999998888754
No 71
>PRK09401 reverse gyrase; Reviewed
Probab=97.35 E-value=0.0011 Score=90.17 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=57.7
Q ss_pred CCCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcC
Q 000509 817 SVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRD 888 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~ 888 (1456)
...+++.|..+|...+...=.+|++|.|||||.++..++..+.. .+.++||++||..-++|+.+++.+++
T Consensus 78 G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~--~g~~alIL~PTreLa~Qi~~~l~~l~ 147 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAK--KGKKSYIIFPTRLLVEQVVEKLEKFG 147 (1176)
T ss_pred CCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHHHHHh
Confidence 34678999999999988777899999999999766555444433 37899999999999999999988753
No 72
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=97.35 E-value=0.00069 Score=74.26 Aligned_cols=69 Identities=22% Similarity=0.201 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHhccCCCcEEEEcCCCCChHHHH-HHHHHHHHHc--CCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 819 RFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTA-VQILNVLYHN--CPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~ti-a~iI~~L~~~--~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.+++.|.+|+...+...-.+|.+|+|+|||.++ ..++..+... ..+.+++|++|+..-+.+....+.+.
T Consensus 21 ~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~ 92 (203)
T cd00268 21 KPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKL 92 (203)
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHH
Confidence 478899999999887777999999999999884 4455555554 35678999999999999998887654
No 73
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.33 E-value=0.0034 Score=80.36 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=45.3
Q ss_pred HHHHhcc-CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 826 GAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 826 eAI~sal-~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
++|..++ ..+..+|.+|.|||||.....-+...+....+.+|||+|+|..-.+|+++.+..+
T Consensus 7 ~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l 69 (636)
T TIGR03117 7 LNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERL 69 (636)
T ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHH
Confidence 3455555 4567889999999999665544433333334789999999999999999866543
No 74
>PRK02362 ski2-like helicase; Provisional
Probab=97.33 E-value=0.0013 Score=86.49 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHhcc-CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 818 VRFTPTQVGAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 818 v~Ln~sQ~eAI~sal-~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
..|+|-|.+|+..++ +..=.+|..|.|+|||.++...+...+. ++.++|+++|+..-+++.++++.+.
T Consensus 22 ~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~--~~~kal~i~P~raLa~q~~~~~~~~ 90 (737)
T PRK02362 22 EELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA--RGGKALYIVPLRALASEKFEEFERF 90 (737)
T ss_pred CcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHHHHh
Confidence 358899999998754 5556789999999999988765544443 3789999999999999988877643
No 75
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.31 E-value=0.0029 Score=79.10 Aligned_cols=67 Identities=25% Similarity=0.310 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCC
Q 000509 819 RFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~ 890 (1456)
.|+|-|.+||...+...-.+|+.|.|||||.+.. +-.+. .+..+||++|+..-+.+..+++...+++
T Consensus 11 ~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~--lp~l~---~~~~~lVi~P~~~L~~dq~~~l~~~gi~ 77 (470)
T TIGR00614 11 SFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQ--LPALC---SDGITLVISPLISLMEDQVLQLKASGIP 77 (470)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHH--HHHHH---cCCcEEEEecHHHHHHHHHHHHHHcCCc
Confidence 5789999999999987779999999999995432 22232 2568999999998888888877766543
No 76
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.26 E-value=0.0023 Score=79.94 Aligned_cols=70 Identities=21% Similarity=0.225 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHH-HHHHHHcCC-------CCcEEEEecCHHHHHHHHHHHHhc
Q 000509 818 VRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQI-LNVLYHNCP-------SQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 818 v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~i-I~~L~~~~p-------~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
..+++-|.+||...+...=.+|.+|.|||||....-- +..+....+ ..++||++||...+.++.+.+.++
T Consensus 108 ~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l 185 (475)
T PRK01297 108 PYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAAL 185 (475)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHh
Confidence 3589999999999887777889999999999765433 333443321 358999999999999988877654
No 77
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.23 E-value=0.0018 Score=85.51 Aligned_cols=62 Identities=11% Similarity=0.252 Sum_probs=47.2
Q ss_pred HHHHHHHhcc-CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 823 TQVGAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 823 sQ~eAI~sal-~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
+....|..++ +++..+|+||||||||+.+...+.. ....+.+|+|+.|+..|+.++.+++.+
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~--~~~~~~~ilvlqPrR~aA~qia~rva~ 70 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQ--HGGINGKIIMLEPRRLAARNVAQRLAE 70 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHH--cCCcCCeEEEECChHHHHHHHHHHHHH
Confidence 3455566665 5678999999999999998765432 222346899999999999999988754
No 78
>PRK00254 ski2-like helicase; Provisional
Probab=97.23 E-value=0.0018 Score=85.00 Aligned_cols=67 Identities=18% Similarity=0.278 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHhc-cCCCcEEEEcCCCCChHHHHHH-HHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 818 VRFTPTQVGAIISG-IQPGLTMVVGPPGTGKTDTAVQ-ILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 818 v~Ln~sQ~eAI~sa-l~~gltLI~GPPGTGKT~tia~-iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
..|++-|.+|+..+ ....=.+|.+|.|||||.++.. ++..+... +.++|+++|+..-+++.++++.+
T Consensus 22 ~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~--~~~~l~l~P~~aLa~q~~~~~~~ 90 (720)
T PRK00254 22 EELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE--GGKAVYLVPLKALAEEKYREFKD 90 (720)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--CCeEEEEeChHHHHHHHHHHHHH
Confidence 35899999999874 4556689999999999998844 44444433 67999999999998888877654
No 79
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.22 E-value=0.011 Score=74.73 Aligned_cols=259 Identities=14% Similarity=0.210 Sum_probs=159.5
Q ss_pred CCCCCHHHHHHHHhcc---CCC---cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCC
Q 000509 817 SVRFTPTQVGAIISGI---QPG---LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal---~~g---ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~ 890 (1456)
++.||..|.++|.-.. ..+ .-||||--|||||-|++-.+...+.+ +..+.++|||---+.|.++.+.+.--+
T Consensus 260 PF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--G~Q~ALMAPTEILA~QH~~~~~~~l~~ 337 (677)
T COG1200 260 PFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--GYQAALMAPTEILAEQHYESLRKWLEP 337 (677)
T ss_pred CCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--CCeeEEeccHHHHHHHHHHHHHHHhhh
Confidence 6899999999997654 222 45899999999999998888778877 899999999999999998888764100
Q ss_pred cccEEEccCcccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccchhhhHhhhHHHHHHHHHHhh
Q 000509 891 ARYLLRLGQGEQELATDLDFSRQGRVNAMLVRRLELLSEVERLARSLQLPEDVGYTCETAGYFWLLHVYSRWEQFLAACA 970 (1456)
Q Consensus 891 e~~llRlG~~e~~l~~~~~~sr~gRv~~~l~~r~~lL~ev~kLa~~l~~~~~~~~sceta~~f~~~~v~~~w~~fl~~l~ 970 (1456)
-. +|++-
T Consensus 338 ~~--i~V~l----------------------------------------------------------------------- 344 (677)
T COG1200 338 LG--IRVAL----------------------------------------------------------------------- 344 (677)
T ss_pred cC--CeEEE-----------------------------------------------------------------------
Confidence 00 11110
Q ss_pred ccCCCCcccccccchhhhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcEE
Q 000509 971 DNEGKPTFVRDRFPFKEFFSNTPQPIFTGDSFEKDMRAAKGCFRHLQTLFQELEECRAFELLKSTADRANYLMTKQAKIV 1050 (1456)
Q Consensus 971 ~~~~~~~~i~~~fpf~~~f~~~p~~l~~~~s~e~~l~~a~~~~~~i~~if~eL~e~r~fElLr~~~~r~~~lllk~a~II 1050 (1456)
... ..++.... .+.+. +.-.+.+||
T Consensus 345 ------------------LtG----~~kgk~r~--------------~~l~~-------------------l~~G~~~iv 369 (677)
T COG1200 345 ------------------LTG----SLKGKARK--------------EILEQ-------------------LASGEIDIV 369 (677)
T ss_pred ------------------eec----ccchhHHH--------------HHHHH-------------------HhCCCCCEE
Confidence 000 00000000 00001 112467888
Q ss_pred EEcchhHhhhhhHHhhcCCCCCEEEEecCCCCChHHHHHHHHhC--CCCCC----CceecchhhhhhcCCcccHHHHHHH
Q 000509 1051 AMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPMLLN--DRRML----PPVVKNMAFQKYSHMDQSLFTRFVR 1124 (1456)
Q Consensus 1051 a~T~t~aa~~~~~l~~lg~kfD~VIIDEAsQitE~EtlIPLll~--Dh~QL----pPvV~s~~~~~~~~l~qSLFeRL~~ 1124 (1456)
+.| ||..-.. ... ...-.|||||=...=-.+-..-...+ .|+|| -|+-.+.+...|.+++.|...-+-.
T Consensus 370 VGT--HALiQd~--V~F-~~LgLVIiDEQHRFGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~ 444 (677)
T COG1200 370 VGT--HALIQDK--VEF-HNLGLVIIDEQHRFGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPP 444 (677)
T ss_pred EEc--chhhhcc--eee-cceeEEEEeccccccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCC
Confidence 887 4443111 111 13568999996544322222222222 25665 5666677777788899998776655
Q ss_pred cCCCeeeccccccCchhHHHHHHHHhccCCCCCceeecCCCCCCCccCCCCCccCCHHHHHHHHHHHHHHHHhCCCCCCE
Q 000509 1125 LGIPYIELNAQGRARPSIAQLYNWRYRDLGDLPFLVDVPDYNGRGESAPSPWFYQNEGEAEYVVSVYIYMRLLGYPANKI 1204 (1456)
Q Consensus 1125 ~g~p~i~L~~QYR~~PsIa~~~n~~yy~l~dlp~fidV~~~~g~~e~~~~~~S~~N~~EAe~vv~iv~~L~~~Gy~~~~I 1204 (1456)
-.-|..+........+.+.++++.-.-. ....++-+|-... ++ .-|...+.+++.+|. .-++.-+|
T Consensus 445 GRkpI~T~~i~~~~~~~v~e~i~~ei~~--GrQaY~VcPLIeE---SE--------~l~l~~a~~~~~~L~-~~~~~~~v 510 (677)
T COG1200 445 GRKPITTVVIPHERRPEVYERIREEIAK--GRQAYVVCPLIEE---SE--------KLELQAAEELYEELK-SFLPELKV 510 (677)
T ss_pred CCCceEEEEeccccHHHHHHHHHHHHHc--CCEEEEEeccccc---cc--------cchhhhHHHHHHHHH-HHccccee
Confidence 4467777777778889999888876553 2233444443222 21 124556677777776 44666679
Q ss_pred EEecC--CHHHHHHHHHHHHhc
Q 000509 1205 SILTT--YNGQKLLIRDVINRQ 1224 (1456)
Q Consensus 1205 gILTp--Y~aQ~~lIr~~L~~r 1224 (1456)
|++.- -.+++..+-..++..
T Consensus 511 gL~HGrm~~~eKd~vM~~Fk~~ 532 (677)
T COG1200 511 GLVHGRMKPAEKDAVMEAFKEG 532 (677)
T ss_pred EEEecCCChHHHHHHHHHHHcC
Confidence 99876 566888888888863
No 80
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.20 E-value=0.002 Score=85.03 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=48.6
Q ss_pred HHHHHHhcc-CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 824 QVGAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 824 Q~eAI~sal-~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
....|..++ +++..+|+||+|||||+.+...+..-. ..+.+|+|+.|+..|+.++.+++.+
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~--~~~~~ilvlqPrR~aA~qiA~rva~ 67 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAP--GIGGKIIMLEPRRLAARSAAQRLAS 67 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhh--ccCCeEEEEeCcHHHHHHHHHHHHH
Confidence 445565555 567899999999999999888765433 2457999999999999999998864
No 81
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=97.19 E-value=0.0047 Score=81.15 Aligned_cols=70 Identities=13% Similarity=0.026 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 818 VRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 818 v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
..+++-|.+||..++...=.+|..|.|||||....--+...+.+.++.++|+++||..-+.+..+.+.++
T Consensus 35 ~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l 104 (742)
T TIGR03817 35 HRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVREL 104 (742)
T ss_pred CcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHh
Confidence 3699999999999987777999999999999876554444444446789999999999999998888765
No 82
>PRK14701 reverse gyrase; Provisional
Probab=97.19 E-value=0.0034 Score=87.80 Aligned_cols=69 Identities=20% Similarity=0.172 Sum_probs=55.5
Q ss_pred CCCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 817 SVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.+.+++-|.++|..+++..-.++++|.|||||.+..-++..+ ...+.++||++||..-+.|+.+++..+
T Consensus 77 G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~--~~~g~~aLVl~PTreLa~Qi~~~l~~l 145 (1638)
T PRK14701 77 GFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFL--ALKGKKCYIILPTTLLVKQTVEKIESF 145 (1638)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHH--HhcCCeEEEEECHHHHHHHHHHHHHHH
Confidence 346789999999999988888999999999998544333322 224679999999999999998888764
No 83
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.18 E-value=0.00044 Score=74.75 Aligned_cols=53 Identities=28% Similarity=0.335 Sum_probs=43.3
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCCc
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPA 891 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~e 891 (1456)
.++|.||||||||+++.+++...+++ ++++++++.. ...+++.+++...+++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e-~~~~~~~~~~~~~g~~~ 53 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLE-ESPEELIENAESLGWDL 53 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECC-CCHHHHHHHHHHcCCCh
Confidence 37899999999999999999988876 8899999864 45667777777766653
No 84
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.13 E-value=0.0078 Score=77.55 Aligned_cols=57 Identities=25% Similarity=0.448 Sum_probs=47.6
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCC
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~ 890 (1456)
.+++++|..|=|||||+.+...+...+. .++.++|+++|-..-+.++..|+...+++
T Consensus 48 ~~~V~vVRSpMGTGKTtaLi~wLk~~l~-~~~~~VLvVShRrSL~~sL~~rf~~~~l~ 104 (824)
T PF02399_consen 48 KRGVLVVRSPMGTGKTTALIRWLKDALK-NPDKSVLVVSHRRSLTKSLAERFKKAGLS 104 (824)
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHhcc-CCCCeEEEEEhHHHHHHHHHHHHhhcCCC
Confidence 4689999999999999987766655544 36899999999999999999999876543
No 85
>PRK05973 replicative DNA helicase; Provisional
Probab=96.87 E-value=0.0018 Score=73.62 Aligned_cols=62 Identities=18% Similarity=0.318 Sum_probs=50.9
Q ss_pred HHHhccCCC-cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCCc
Q 000509 827 AIISGIQPG-LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPA 891 (1456)
Q Consensus 827 AI~sal~~g-ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~e 891 (1456)
.+..++.+| +++|.|+||+|||+++.+++.+...+ ++++++++.--. .+++.+++...+++.
T Consensus 56 ~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes-~~~i~~R~~s~g~d~ 118 (237)
T PRK05973 56 ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYT-EQDVRDRLRALGADR 118 (237)
T ss_pred HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCC-HHHHHHHHHHcCCCh
Confidence 366677665 89999999999999999999988876 889999986554 478888888877654
No 86
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=96.86 E-value=0.0049 Score=78.78 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=61.5
Q ss_pred CCCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 817 SVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.+.|=..|.+-+..|+ -.=|+|+-|-|+|||.+|+.++.+-+.-+|..||+++||+-.-|.|-...+...
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~ 129 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIY 129 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhc
Confidence 4678889999999999 445999999999999999999999999999999999999999998876555433
No 87
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=96.85 E-value=0.0062 Score=74.21 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=57.8
Q ss_pred CCCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 817 SVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
.+..-..|......++..+ |||+=|-|=|||.+++.++.+.+..+++ ++|++|||..-|.|-.+-+.+
T Consensus 13 ~ie~R~YQ~~i~a~al~~N-tLvvlPTGLGKT~IA~~V~~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~ 80 (542)
T COG1111 13 TIEPRLYQLNIAAKALFKN-TLVVLPTGLGKTFIAAMVIANRLRWFGG-KVLFLAPTKPLVLQHAEFCRK 80 (542)
T ss_pred cccHHHHHHHHHHHHhhcC-eEEEecCCccHHHHHHHHHHHHHHhcCC-eEEEecCCchHHHHHHHHHHH
Confidence 3445567888888888664 9999999999999999999999888877 999999999999988777665
No 88
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.85 E-value=0.0024 Score=83.17 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=57.5
Q ss_pred CCCCCHHHHHHHHhccCC------CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 817 SVRFTPTQVGAIISGIQP------GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~~------gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
++.||+.|.+||...... .-.+++||.|||||.++...+...+.+ +.++|+++||...+.|.++.+.++
T Consensus 259 ~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~--g~q~lilaPT~~LA~Q~~~~l~~l 333 (681)
T PRK10917 259 PFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA--GYQAALMAPTEILAEQHYENLKKL 333 (681)
T ss_pred CCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEeccHHHHHHHHHHHHHH
Confidence 578999999999766532 247999999999999988777666554 789999999999999999998765
No 89
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.06 Score=68.17 Aligned_cols=71 Identities=20% Similarity=0.166 Sum_probs=52.4
Q ss_pred CCCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHH-HHHHHHHHH-cCCCCc-EEEEecCHHHHHHHHHHHHhc
Q 000509 817 SVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTA-VQILNVLYH-NCPSQR-TLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~ti-a~iI~~L~~-~~p~~r-ILIvA~SN~AlD~L~ekL~~l 887 (1456)
-...||-|..||-.++...=.+++.+.|||||..- .-++..+.. ...... .||++||...+.|+.+.+..+
T Consensus 49 f~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~ 122 (513)
T COG0513 49 FEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKL 122 (513)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHH
Confidence 34678999999999998777899999999996532 223444331 111222 899999999999998887764
No 90
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.82 E-value=0.0024 Score=82.57 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=56.6
Q ss_pred CCCCCHHHHHHHHhccCC---C---cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 817 SVRFTPTQVGAIISGIQP---G---LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~~---g---ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
++.||+.|.+||...+.. + -.+|+||.|||||.++...+...+.+ +.++++++||..-+.|+.+.+.++
T Consensus 233 pf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--g~qvlilaPT~~LA~Q~~~~~~~l 307 (630)
T TIGR00643 233 PFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--GYQVALMAPTEILAEQHYNSLRNL 307 (630)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEECCHHHHHHHHHHHHHHH
Confidence 578999999999766531 1 36999999999999887666666655 779999999999999999888764
No 91
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.82 E-value=0.0031 Score=63.68 Aligned_cols=56 Identities=30% Similarity=0.450 Sum_probs=39.6
Q ss_pred HHHHHHHHhcc---CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHH
Q 000509 822 PTQVGAIISGI---QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALND 879 (1456)
Q Consensus 822 ~sQ~eAI~sal---~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~ 879 (1456)
..+..+|...+ ..+..+|+||||||||+++..++..+.. .+.+++.+..+..+...
T Consensus 4 ~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~~~~~~~~ 62 (151)
T cd00009 4 EEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR--PGAPFLYLNASDLLEGL 62 (151)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc--CCCCeEEEehhhhhhhh
Confidence 34555555554 2568999999999999999988887763 35677777765554433
No 92
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=96.76 E-value=0.016 Score=74.84 Aligned_cols=67 Identities=22% Similarity=0.294 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCC
Q 000509 819 RFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~ 890 (1456)
.|++.|.+||.+.+...-++|.+|.|+|||.+.. +-.+.. +..+||++|+..-+.+..+.+...++.
T Consensus 25 ~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~--lpal~~---~g~tlVisPl~sL~~dqv~~l~~~gi~ 91 (607)
T PRK11057 25 QFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQ--IPALVL---DGLTLVVSPLISLMKDQVDQLLANGVA 91 (607)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHHHc---CCCEEEEecHHHHHHHHHHHHHHcCCc
Confidence 5789999999999987778999999999996543 222332 468999999998888887777765543
No 93
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.72 E-value=0.0023 Score=70.91 Aligned_cols=55 Identities=27% Similarity=0.383 Sum_probs=40.5
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEe---cCHHHHHHHHHHHHhcCCC
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT---HSNQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA---~SN~AlD~L~ekL~~l~i~ 890 (1456)
|.+.+++||+|+|||||++.++..+..+ +.+|.++| +--.|++||..-...++++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 3567899999999999999999999877 77776666 3447888886555545544
No 94
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.68 E-value=0.045 Score=74.00 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=48.9
Q ss_pred CCCCCHHHHH---HHHhcc-CCCcEEEEcCCCCChHHHHHHHHHHHH-HcCCCCcEEEEecCHHHHHHHHHH
Q 000509 817 SVRFTPTQVG---AIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLY-HNCPSQRTLIITHSNQALNDLFEK 883 (1456)
Q Consensus 817 ~v~Ln~sQ~e---AI~sal-~~gltLI~GPPGTGKT~tia~iI~~L~-~~~p~~rILIvA~SN~AlD~L~ek 883 (1456)
.+..-+.|.+ +|..++ ..+..+|..|+|||||.-- ++-.++ ....+++|+|.|+|..--+||+.+
T Consensus 255 ~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaY--Llpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~k 324 (928)
T PRK08074 255 KYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAY--LLPAAYFAKKKEEPVVISTYTIQLQQQLLEK 324 (928)
T ss_pred CCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHH--HHHHHHHhhccCCeEEEEcCCHHHHHHHHHh
Confidence 4677789988 677776 4567789999999998533 333333 233579999999999999999875
No 95
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=96.67 E-value=0.022 Score=73.23 Aligned_cols=67 Identities=22% Similarity=0.257 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCC
Q 000509 819 RFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~ 890 (1456)
.|++-|.+||.+.+...-++|..|.|+|||.+.. +. .++. +..++|++|+..-+.+-.+++.+.+++
T Consensus 13 ~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~-lp-al~~---~g~~lVisPl~sL~~dq~~~l~~~gi~ 79 (591)
T TIGR01389 13 DFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQ-VP-ALLL---KGLTVVISPLISLMKDQVDQLRAAGVA 79 (591)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHH-HH-HHHc---CCcEEEEcCCHHHHHHHHHHHHHcCCc
Confidence 4789999999999977778999999999997654 22 2332 467899999998888888888776543
No 96
>PRK08181 transposase; Validated
Probab=96.64 E-value=0.0046 Score=71.69 Aligned_cols=60 Identities=33% Similarity=0.442 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHhcc----CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHH
Q 000509 819 RFTPTQVGAIISGI----QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIM 885 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal----~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~ 885 (1456)
.++..|..++..+- ...-.+++||||||||+++..+...++++ +.+++.++- .++++.|.
T Consensus 87 ~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~-----~~L~~~l~ 150 (269)
T PRK08181 87 MVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRT-----TDLVQKLQ 150 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeH-----HHHHHHHH
Confidence 36788988886552 33457999999999999999999988876 677877763 34555543
No 97
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.57 E-value=0.004 Score=71.20 Aligned_cols=58 Identities=31% Similarity=0.409 Sum_probs=41.9
Q ss_pred CHHHHHHHHhccC--------CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHH
Q 000509 821 TPTQVGAIISGIQ--------PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIM 885 (1456)
Q Consensus 821 n~sQ~eAI~sal~--------~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~ 885 (1456)
++.|..|+..+.. .+..++.||||||||+++.+++..+... +.++++++ +.+++..+.
T Consensus 78 ~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it-----~~~l~~~l~ 143 (244)
T PRK07952 78 CEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT-----VADIMSAMK 143 (244)
T ss_pred CchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE-----HHHHHHHHH
Confidence 4567666654431 2467999999999999999999999876 67888774 344555544
No 98
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=96.56 E-value=0.055 Score=72.56 Aligned_cols=65 Identities=20% Similarity=0.314 Sum_probs=47.9
Q ss_pred CCCCCHHHHH---HHHhcc-CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHH
Q 000509 817 SVRFTPTQVG---AIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEK 883 (1456)
Q Consensus 817 ~v~Ln~sQ~e---AI~sal-~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ek 883 (1456)
.+...+.|.+ +|..++ .....+|..|+|||||.....-+..... .+++|+|.|+|..-.+|++.+
T Consensus 243 ~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~--~~~~vvi~t~t~~Lq~Ql~~~ 311 (850)
T TIGR01407 243 GLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI--TEKPVVISTNTKVLQSQLLEK 311 (850)
T ss_pred CCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHH
Confidence 4667899997 555555 4567789999999999654433322222 478999999999988998764
No 99
>COG4889 Predicted helicase [General function prediction only]
Probab=96.54 E-value=0.037 Score=70.63 Aligned_cols=76 Identities=22% Similarity=0.252 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHhccC-----CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHH
Q 000509 806 GPYPQDQPRQNSVRFTPTQVGAIISGIQ-----PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDL 880 (1456)
Q Consensus 806 ~p~p~~~p~~n~v~Ln~sQ~eAI~sal~-----~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L 880 (1456)
+.-+.+.|-..+..+-|.|+.||.++.. .+=-||.. ||||||+|...|...|.. .|||.+.||=+.+.|-
T Consensus 148 ~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMA-cGTGKTfTsLkisEala~----~~iL~LvPSIsLLsQT 222 (1518)
T COG4889 148 TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMA-CGTGKTFTSLKISEALAA----ARILFLVPSISLLSQT 222 (1518)
T ss_pred cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEe-cCCCccchHHHHHHHHhh----hheEeecchHHHHHHH
Confidence 3445566666778889999999988762 12245554 599999999999888875 7999999999999888
Q ss_pred HHHHHh
Q 000509 881 FEKIMQ 886 (1456)
Q Consensus 881 ~ekL~~ 886 (1456)
+....+
T Consensus 223 lrew~~ 228 (1518)
T COG4889 223 LREWTA 228 (1518)
T ss_pred HHHHhh
Confidence 777654
No 100
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.54 E-value=0.0089 Score=77.45 Aligned_cols=79 Identities=15% Similarity=0.232 Sum_probs=62.8
Q ss_pred CCCCCHHHHHHHHhccCCC---cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc-CCCcc
Q 000509 817 SVRFTPTQVGAIISGIQPG---LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR-DVPAR 892 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~~g---ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l-~i~e~ 892 (1456)
.+.|=+.|.+||......+ -.+|+-|+|+|||.++..++..+ .+++||+|||...++|-.+.+.+. .++..
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-----~k~tLILvps~~Lv~QW~~ef~~~~~l~~~ 327 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-----KKSCLVLCTSAVSVEQWKQQFKMWSTIDDS 327 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-----CCCEEEEeCcHHHHHHHHHHHHHhcCCCCc
Confidence 4678899999998877443 57999999999999998777554 578999999999999999888875 44555
Q ss_pred cEEEccCc
Q 000509 893 YLLRLGQG 900 (1456)
Q Consensus 893 ~llRlG~~ 900 (1456)
.+.++.++
T Consensus 328 ~I~~~tg~ 335 (732)
T TIGR00603 328 QICRFTSD 335 (732)
T ss_pred eEEEEecC
Confidence 56565543
No 101
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.45 E-value=0.014 Score=73.71 Aligned_cols=47 Identities=15% Similarity=0.324 Sum_probs=42.0
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 838 MVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 838 LI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
|++||.|+|||.+...++...+.. +.++|+++|+..-+.++.+++.+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~--g~~vLvlvP~i~L~~Q~~~~l~~ 47 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL--GKSVLVLVPEIALTPQMIQRFKY 47 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHH
Confidence 589999999999998888888766 78999999999999999988875
No 102
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.41 E-value=0.0023 Score=63.84 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=30.1
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQAL 877 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~Al 877 (1456)
.+..+|.||||||||+++..++..+... ...++.++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP--GGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC--CCCEEEECCEEccc
Confidence 4578999999999999999887666433 23566666655443
No 103
>PRK12377 putative replication protein; Provisional
Probab=96.40 E-value=0.0055 Score=70.31 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=29.5
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
.-.+++||||||||+++.+++..+... +.++++++-
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~ 137 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTV 137 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEH
Confidence 457899999999999999999999865 566655543
No 104
>PRK06526 transposase; Provisional
Probab=96.39 E-value=0.006 Score=70.24 Aligned_cols=52 Identities=23% Similarity=0.292 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHhcc---CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 819 RFTPTQVGAIISGI---QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal---~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
.++..|...+..+- .+.-.+|+||||||||+++..+...+++. +.++++++.
T Consensus 80 ~~~~~~~~~l~~~~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~--g~~v~f~t~ 134 (254)
T PRK06526 80 SLKRDTIAHLGTLDFVTGKENVVFLGPPGTGKTHLAIGLGIRACQA--GHRVLFATA 134 (254)
T ss_pred CcchHHHHHHhcCchhhcCceEEEEeCCCCchHHHHHHHHHHHHHC--CCchhhhhH
Confidence 35666776665442 34457999999999999999999888876 677766443
No 105
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=96.39 E-value=0.011 Score=80.49 Aligned_cols=63 Identities=17% Similarity=0.172 Sum_probs=45.6
Q ss_pred HHHHHHHhcc-CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 823 TQVGAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 823 sQ~eAI~sal-~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
+..+.|..++ .+.+++|+|+|||||||.+-+++...- .....+|+++-|-..|+-.+.+++.+
T Consensus 70 ~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~-~~~~~~I~~tQPRRlAA~svA~RvA~ 133 (1283)
T TIGR01967 70 AKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELG-RGSHGLIGHTQPRRLAARTVAQRIAE 133 (1283)
T ss_pred HHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcC-CCCCceEecCCccHHHHHHHHHHHHH
Confidence 3456666666 578999999999999998776654321 11234677777888898888888765
No 106
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.38 E-value=0.006 Score=66.54 Aligned_cols=45 Identities=40% Similarity=0.586 Sum_probs=34.2
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
.-.++.||||||||++++.++..++.. +.+++.+.. .+++++|..
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~--g~~v~f~~~-----~~L~~~l~~ 92 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRK--GYSVLFITA-----SDLLDELKQ 92 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEH-----HHHHHHHHC
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccC--CcceeEeec-----Cceeccccc
Confidence 347899999999999999999999985 788888874 346666653
No 107
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=96.37 E-value=0.0089 Score=81.36 Aligned_cols=71 Identities=18% Similarity=0.150 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHhcc-----CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcC
Q 000509 818 VRFTPTQVGAIISGI-----QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRD 888 (1456)
Q Consensus 818 v~Ln~sQ~eAI~sal-----~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~ 888 (1456)
+.+-+.|.+||.+.. ..+-.+|+.|.|||||.|++.++..|++.....|||++++++.-++|..+.+...+
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~ 487 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTK 487 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcc
Confidence 557789999996554 23458999999999999999999999887667899999999999999999887654
No 108
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=96.34 E-value=0.0091 Score=79.84 Aligned_cols=69 Identities=23% Similarity=0.269 Sum_probs=56.8
Q ss_pred CCCCCHHHHHHHHhccC------CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 817 SVRFTPTQVGAIISGIQ------PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~------~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
++.+|+.|.+||...+. +.-.+|+||.|||||.++...+...+.+ +.+++|++||..-+.|..+.+.+.
T Consensus 449 ~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--g~qvlvLvPT~~LA~Q~~~~f~~~ 523 (926)
T TIGR00580 449 PFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--GKQVAVLVPTTLLAQQHFETFKER 523 (926)
T ss_pred CCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--CCeEEEEeCcHHHHHHHHHHHHHH
Confidence 56789999999987653 1246999999999999888776655555 689999999999999999988764
No 109
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.31 E-value=0.0062 Score=72.31 Aligned_cols=52 Identities=27% Similarity=0.386 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHhccC-CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEE
Q 000509 819 RFTPTQVGAIISGIQ-PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLII 870 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~-~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIv 870 (1456)
.|++.|.+.+..++. .+-.+|.||+||||||++..++..+....++.|++++
T Consensus 128 ~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivti 180 (323)
T PRK13833 128 IMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVIL 180 (323)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEe
Confidence 478889988888774 4567899999999999999998888766566777654
No 110
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.30 E-value=0.0063 Score=69.21 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=45.8
Q ss_pred hccC-CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCC
Q 000509 830 SGIQ-PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 830 sal~-~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~ 890 (1456)
-++. ..+++|.||||||||+++.+++..-+.+ ++++++++.. ...+++.+++.+.+.+
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~e-e~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALE-EHPVQVRRNMAQFGWD 74 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEee-CCHHHHHHHHHHhCCC
Confidence 3554 4588999999999999999998877665 8899999964 4666788887776654
No 111
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.29 E-value=0.11 Score=69.15 Aligned_cols=64 Identities=11% Similarity=0.189 Sum_probs=48.9
Q ss_pred CCCCCHHHHH---HHHhccC-CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHH
Q 000509 817 SVRFTPTQVG---AIISGIQ-PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEK 883 (1456)
Q Consensus 817 ~v~Ln~sQ~e---AI~sal~-~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ek 883 (1456)
.+..-+.|.+ +|..++. ....+|+.|+|||||..-.- -.+... .+.+++|.|+|..-.+|++.+
T Consensus 243 ~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayll--p~l~~~-~~~~vvI~t~T~~Lq~Ql~~~ 310 (820)
T PRK07246 243 GLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLL--PLLAQS-DQRQIIVSVPTKILQDQIMAE 310 (820)
T ss_pred CCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHH--HHHHhc-CCCcEEEEeCcHHHHHHHHHH
Confidence 5678899988 8888774 56778999999999965433 233332 468999999999999999644
No 112
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.28 E-value=0.007 Score=68.02 Aligned_cols=56 Identities=25% Similarity=0.460 Sum_probs=41.8
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCC
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~ 890 (1456)
...+++|.||||||||.++.+.+.+-+.+. ++++++++..... .++.+.+..++++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~-ge~vlyvs~ee~~-~~l~~~~~s~g~d 73 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF-GEKVLYVSFEEPP-EELIENMKSFGWD 73 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-T--EEEEESSS-H-HHHHHHHHTTTS-
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc-CCcEEEEEecCCH-HHHHHHHHHcCCc
Confidence 346899999999999999999887766542 6889988865544 7888888877765
No 113
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.27 E-value=0.0077 Score=72.89 Aligned_cols=56 Identities=20% Similarity=0.442 Sum_probs=42.5
Q ss_pred CCCCCCCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEE
Q 000509 813 PRQNSVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLII 870 (1456)
Q Consensus 813 p~~n~v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIv 870 (1456)
|....+.+.+...+.+.. ..|+.+|.||+||||||++..++..+..+.++.+|+.+
T Consensus 130 ~~l~~lgl~~~~~~~l~~--~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~Ivti 185 (372)
T TIGR02525 130 PDLKQMGIEPDLFNSLLP--AAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTY 185 (372)
T ss_pred CCHHHcCCCHHHHHHHHh--cCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 344456677777666643 57899999999999999999999888776556666654
No 114
>PRK08116 hypothetical protein; Validated
Probab=96.26 E-value=0.012 Score=68.22 Aligned_cols=34 Identities=29% Similarity=0.330 Sum_probs=29.3
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEe
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT 871 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA 871 (1456)
..+++||||||||+++.+++..+..+ +.++++++
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~ 149 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN 149 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 47899999999999999999999876 66776665
No 115
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.25 E-value=0.0075 Score=68.45 Aligned_cols=53 Identities=13% Similarity=0.221 Sum_probs=42.2
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCC
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDV 889 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i 889 (1456)
..+++|.||||||||+++.+++..++.+ +.+++.++... ...++++.+.+++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g~~~~yi~~e~-~~~~~~~~~~~~g~ 76 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQN--GYSVSYVSTQL-TTTEFIKQMMSLGY 76 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEeCCC-CHHHHHHHHHHhCC
Confidence 4589999999999999999999888765 78888888444 45677777766554
No 116
>PRK14974 cell division protein FtsY; Provisional
Probab=96.18 E-value=0.012 Score=70.47 Aligned_cols=56 Identities=29% Similarity=0.341 Sum_probs=42.5
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec---CHHHHHHHHHHHHhcCCC
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH---SNQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~---SN~AlD~L~ekL~~l~i~ 890 (1456)
.+.+.++.||||+|||||++.++..+... +.+|++++. ...|.+++......++++
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~--g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~ 197 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN--GFSVVIAAGDTFRAGAIEQLEEHAERLGVK 197 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcCcHHHHHHHHHHHHHcCCc
Confidence 35688999999999999999999877654 667776653 257778877666666654
No 117
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.18 E-value=0.0082 Score=71.34 Aligned_cols=55 Identities=31% Similarity=0.478 Sum_probs=43.6
Q ss_pred CCHHHHHHHHhcc-CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCH
Q 000509 820 FTPTQVGAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSN 874 (1456)
Q Consensus 820 Ln~sQ~eAI~sal-~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN 874 (1456)
+++.|.+.+..++ ..+..+|.||+||||||++..++..+....+..|++++-.+.
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~ 188 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTG 188 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCC
Confidence 6788989888776 466789999999999999999988776555677877655443
No 118
>PRK10689 transcription-repair coupling factor; Provisional
Probab=96.12 E-value=0.012 Score=80.30 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=57.0
Q ss_pred CCCCCCHHHHHHHHhccCC------CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 816 NSVRFTPTQVGAIISGIQP------GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 816 n~v~Ln~sQ~eAI~sal~~------gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
-++.+|+.|.+||...+.. .-.+|+||.|||||.++..++...+.. +.++||++||..-+.|+.+.+.+.
T Consensus 597 ~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~--g~qvlvLvPT~eLA~Q~~~~f~~~ 672 (1147)
T PRK10689 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN--HKQVAVLVPTTLLAQQHYDNFRDR 672 (1147)
T ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHh
Confidence 4578999999999876642 347999999999999887666555544 789999999999999999888753
No 119
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=96.11 E-value=0.025 Score=65.37 Aligned_cols=52 Identities=29% Similarity=0.385 Sum_probs=34.5
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCC---cEEEEecCHHHHHHHHHHHHhc
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQ---RTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~---rILIvA~SN~AlD~L~ekL~~l 887 (1456)
+=.++.-.+|+|||.++..++..+....+.. ++||+||+ ..+.+-...+.+.
T Consensus 26 ~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 26 RGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKW 80 (299)
T ss_dssp -EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccc
Confidence 4455666899999999999998887765543 59999999 5666665555543
No 120
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.08 E-value=0.007 Score=69.84 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=33.9
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSN 874 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN 874 (1456)
..+++|.||||||||+++.+++.+.+.+ ++++++++.-.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 4589999999999999999999888776 88999998753
No 121
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=96.08 E-value=0.048 Score=71.25 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=58.6
Q ss_pred CCCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 817 SVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
..++-..|+--.+..+...-.-|..|+|+||||..+.+...+.+. ++|++++-||-.-+.|..+||.++
T Consensus 80 G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~k--gkr~yii~PT~~Lv~Q~~~kl~~~ 148 (1187)
T COG1110 80 GFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKK--GKRVYIIVPTTTLVRQVYERLKKF 148 (1187)
T ss_pred CCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhc--CCeEEEEecCHHHHHHHHHHHHHH
Confidence 345667898888777766667888999999999999888777765 799999999999999999999875
No 122
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.04 E-value=0.012 Score=66.73 Aligned_cols=54 Identities=20% Similarity=0.374 Sum_probs=45.2
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCC
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~ 890 (1456)
..+++|.||||||||+++.+++...+++ +.++++++..+. .+++.+.+.+.+++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~-~~~~~~~~~~~g~~ 78 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT-SKSYLKQMESVKID 78 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC-HHHHHHHHHHCCCC
Confidence 4688999999999999999998887776 899999998754 56788888777654
No 123
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.02 E-value=0.014 Score=68.05 Aligned_cols=54 Identities=28% Similarity=0.395 Sum_probs=39.9
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEe---cCHHHHHHHHHHHHhcCC
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT---HSNQALNDLFEKIMQRDV 889 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA---~SN~AlD~L~ekL~~l~i 889 (1456)
+.+.++.||||+|||||++.++..+... +.+|++++ +...|..++.......++
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~~r~~a~~ql~~~~~~~~i 128 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDTFRAAAIEQLEEWAKRLGV 128 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCCCCHHHHHHHHHHHHhCCe
Confidence 3567788999999999999999888654 67888776 344566777655555443
No 124
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.02 E-value=0.0055 Score=62.15 Aligned_cols=53 Identities=21% Similarity=0.396 Sum_probs=33.9
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcC----CCCcEEEEecCHHHHHHHHHHHHh
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNC----PSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~----p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
.++.+|.||||+|||+++..++..+.... ...-+.+.+++......+...+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 60 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILE 60 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999999998876421 123344444544446677776654
No 125
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.99 E-value=0.013 Score=65.82 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=45.6
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCC
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~ 890 (1456)
..+++|.||||||||+++.+++.+.+++ ++++++++... ..+++.+++...+.+
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~-~~~~l~~~~~~~~~~ 69 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEE-REERILGYAKSKGWD 69 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CHHHHHHHHHHcCCC
Confidence 4588999999999999999999888776 88999998866 578888888777654
No 126
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.97 E-value=0.011 Score=61.48 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=33.1
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHH
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQAL 877 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~Al 877 (1456)
+++|.||||||||+++..++..+... +.++++++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcchH
Confidence 47899999999999999999888763 78888888765543
No 127
>PRK06893 DNA replication initiation factor; Validated
Probab=95.96 E-value=0.0081 Score=68.02 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=30.9
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecC
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHS 873 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~S 873 (1456)
.+..+|+||||||||+++..++..+..+ +.++..+..+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHH
Confidence 4567999999999999999999998877 4566666553
No 128
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.95 E-value=0.012 Score=69.43 Aligned_cols=54 Identities=30% Similarity=0.406 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHhccC-CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 819 RFTPTQVGAIISGIQ-PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~-~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
.|++.|.+.+..++. .+..+|.||+||||||++..++..+-...++.||+++-.
T Consensus 116 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd 170 (299)
T TIGR02782 116 IMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIED 170 (299)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECC
Confidence 377888888887774 567899999999999999988877766556778776554
No 129
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=95.93 E-value=0.24 Score=62.68 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=42.6
Q ss_pred HHHhcc-CCCcEEEEcCCCCChHHHHHHHHHHHHHcCC--CCcEEEEecCHHHHHHHHHHHHh
Q 000509 827 AIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCP--SQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 827 AI~sal-~~gltLI~GPPGTGKT~tia~iI~~L~~~~p--~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
-|..++ .+.+++|.|.-|+||||=+.+. |+..+. ..+|-++=|-..|+-.+..|+.+
T Consensus 58 ~il~~ve~nqvlIviGeTGsGKSTQipQy---L~eaG~~~~g~I~~TQPRRVAavslA~RVAe 117 (674)
T KOG0922|consen 58 QILYAVEDNQVLIVIGETGSGKSTQIPQY---LAEAGFASSGKIACTQPRRVAAVSLAKRVAE 117 (674)
T ss_pred HHHHHHHHCCEEEEEcCCCCCccccHhHH---HHhcccccCCcEEeecCchHHHHHHHHHHHH
Confidence 344444 6789999999999999877665 443332 34588888999999999888875
No 130
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.93 E-value=0.015 Score=71.71 Aligned_cols=55 Identities=25% Similarity=0.377 Sum_probs=40.1
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec---CHHHHHHHHHHHHhcCCC
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH---SNQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~---SN~AlD~L~ekL~~l~i~ 890 (1456)
+.+.++.||||+|||||++.++..+... +.++++++. ...|.+++..-....+++
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~--g~kV~lV~~D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKK--GLKVGLVAADTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEecCCCCCHHHHHHHHHHHHHcCCc
Confidence 5688999999999999999999887654 677777764 334556665544444544
No 131
>COG1204 Superfamily II helicase [General function prediction only]
Probab=95.92 E-value=0.029 Score=73.67 Aligned_cols=66 Identities=17% Similarity=0.232 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHhccCC-CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHH
Q 000509 819 RFTPTQVGAIISGIQP-GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIM 885 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~~-gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~ 885 (1456)
.+.+.|++||..+... +=.+|.-|-|+|||.++--+|.+-+... +.|++.++|.++-+.+.++++.
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-~~k~vYivPlkALa~Ek~~~~~ 97 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-GGKVVYIVPLKALAEEKYEEFS 97 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-CCcEEEEeChHHHHHHHHHHhh
Confidence 6788999999988743 6689999999999999887776665543 6899999999999999988876
No 132
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.91 E-value=0.013 Score=69.34 Aligned_cols=42 Identities=33% Similarity=0.361 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHhcc-CCCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 817 SVRFTPTQVGAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal-~~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+.|++.-..+|..++ ..+..+|.||||||||+++.+++..+
T Consensus 46 ~y~f~~~~~~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYDRRVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred CccCCHHHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHH
Confidence 5889999999998887 46679999999999999999888766
No 133
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.88 E-value=0.017 Score=69.86 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=40.1
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCH---HHHHHHHHHHHhcCCC
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSN---QALNDLFEKIMQRDVP 890 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN---~AlD~L~ekL~~l~i~ 890 (1456)
.++.++.||+|+|||||++.++..+...+...+|.+++.-. .|.+++..--...+++
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~ 196 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVP 196 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCc
Confidence 57899999999999999999998876554346777776433 3666664433333443
No 134
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.85 E-value=0.012 Score=66.22 Aligned_cols=42 Identities=29% Similarity=0.571 Sum_probs=34.3
Q ss_pred hccCC-CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecC
Q 000509 830 SGIQP-GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHS 873 (1456)
Q Consensus 830 sal~~-gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~S 873 (1456)
.++.. .+++|.||||||||+++.+++.+.+.. +.++++++--
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e 60 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE 60 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC
Confidence 34544 489999999999999999999988866 6788877754
No 135
>PRK09183 transposase/IS protein; Provisional
Probab=95.84 E-value=0.016 Score=66.99 Aligned_cols=50 Identities=22% Similarity=0.260 Sum_probs=36.8
Q ss_pred CCHHHHHHHHhc--c-CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEe
Q 000509 820 FTPTQVGAIISG--I-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT 871 (1456)
Q Consensus 820 Ln~sQ~eAI~sa--l-~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA 871 (1456)
++..|...+... + .....+|.||||||||+++..+...+... +.+++.+.
T Consensus 85 ~~~~~i~~L~~~~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~--G~~v~~~~ 137 (259)
T PRK09183 85 APQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRA--GIKVRFTT 137 (259)
T ss_pred CCHHHHHHHhcCCchhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 455677777543 2 34457899999999999999997776654 67787765
No 136
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=95.84 E-value=0.051 Score=74.23 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=42.3
Q ss_pred HHHHHHhcc-CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 824 QVGAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 824 Q~eAI~sal-~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
.++.|..++ .+.+++|.|++||||||.+-+++..+ ......+|.++-|-..|+-.+..++.+
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~-g~g~~g~I~~TQPRRlAArsLA~RVA~ 140 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLEL-GRGVKGLIGHTQPRRLAARTVANRIAE 140 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHc-CCCCCCceeeCCCcHHHHHHHHHHHHH
Confidence 445555555 67899999999999999776655332 111223566666888888888777764
No 137
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.84 E-value=0.012 Score=73.82 Aligned_cols=54 Identities=19% Similarity=0.341 Sum_probs=46.5
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCC
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~ 890 (1456)
..+++|.||||||||+++.+.+...+++ ++++++++. -...+++..+...++++
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~-eEs~~~i~~~~~~lg~~ 316 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACAN--KERAILFAY-EESRAQLLRNAYSWGID 316 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEe-eCCHHHHHHHHHHcCCC
Confidence 4589999999999999999999999887 789999995 56677888888877765
No 138
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.83 E-value=0.016 Score=65.87 Aligned_cols=53 Identities=9% Similarity=0.142 Sum_probs=39.0
Q ss_pred CCHHHHHHHHhcc---CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCH
Q 000509 820 FTPTQVGAIISGI---QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSN 874 (1456)
Q Consensus 820 Ln~sQ~eAI~sal---~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN 874 (1456)
-|.....++.... ..+..+|+||||||||+++..+...+..+ +.+++.++...
T Consensus 28 ~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~ 83 (235)
T PRK08084 28 DNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDK 83 (235)
T ss_pred ccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHH
Confidence 3555566665543 33578999999999999999888888765 67888777643
No 139
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.83 E-value=0.0097 Score=68.92 Aligned_cols=55 Identities=24% Similarity=0.456 Sum_probs=42.3
Q ss_pred CCCCCCCCHHHHHHHHhcc--CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEE
Q 000509 814 RQNSVRFTPTQVGAIISGI--QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLII 870 (1456)
Q Consensus 814 ~~n~v~Ln~sQ~eAI~sal--~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIv 870 (1456)
.+..+-+.+.|.+++..++ ..|+.+|.||+|+||||++..++..+.. ++.+|+.+
T Consensus 58 ~l~~lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~--~~~~iiti 114 (264)
T cd01129 58 DLEKLGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNT--PEKNIITV 114 (264)
T ss_pred CHHHcCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCC--CCCeEEEE
Confidence 3445678999999997766 4689999999999999999988877642 24455544
No 140
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.83 E-value=0.012 Score=66.49 Aligned_cols=54 Identities=24% Similarity=0.477 Sum_probs=41.7
Q ss_pred hccCCC-cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHH
Q 000509 830 SGIQPG-LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIM 885 (1456)
Q Consensus 830 sal~~g-ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~ 885 (1456)
.++.+| +++|.||||||||+++.+++.++..+. +.++|+++.-..+- ++..++.
T Consensus 8 ~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~~~~-~~~~r~~ 62 (242)
T cd00984 8 GGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEMSKE-QLLQRLL 62 (242)
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCCCCHH-HHHHHHH
Confidence 477666 999999999999999999998887653 78899998655443 4445543
No 141
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.82 E-value=0.0063 Score=61.46 Aligned_cols=22 Identities=45% Similarity=0.747 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+|.||||||||+++..++..+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 3799999999999998887665
No 142
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=95.79 E-value=0.017 Score=75.37 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=57.9
Q ss_pred CHHHHHHHHhcc----C------CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcC
Q 000509 821 TPTQVGAIISGI----Q------PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRD 888 (1456)
Q Consensus 821 n~sQ~eAI~sal----~------~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~ 888 (1456)
-..|.+||..+. . .+-.+||-|.|||||.|++.++..|+......+||+++++..-++|+.+.+.+.+
T Consensus 240 r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~ 317 (667)
T TIGR00348 240 RYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQ 317 (667)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhC
Confidence 357988887653 1 2468999999999999999999999877778899999999999999999988764
No 143
>PRK04328 hypothetical protein; Provisional
Probab=95.79 E-value=0.017 Score=66.28 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=42.6
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCC
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~ 890 (1456)
..+++|.||||||||+++.+++..-+.+ ++++++++..... +++.+.+.+.+.+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~~-~~i~~~~~~~g~d 76 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEHP-VQVRRNMRQFGWD 76 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCCH-HHHHHHHHHcCCC
Confidence 4588999999999999999998887766 8899999865543 4577777766654
No 144
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.76 E-value=0.018 Score=64.85 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=32.8
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
+..+|.||+|+|||+++.++...+.+..++.+|+.++.
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 35799999999999999999999998888888888764
No 145
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=95.76 E-value=0.064 Score=62.84 Aligned_cols=66 Identities=23% Similarity=0.249 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHhcc----CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 819 RFTPTQVGAIISGI----QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal----~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
.|++-|..|-...+ +..-++||..-|+|||..+-+.|...+.+ +.+|.|.+|-=.-+-+|..||.+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~--G~~vciASPRvDVclEl~~Rlk~ 166 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ--GGRVCIASPRVDVCLELYPRLKQ 166 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc--CCeEEEecCcccchHHHHHHHHH
Confidence 69999988754443 56789999999999999999999999988 89999999977777677666654
No 146
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=95.75 E-value=0.018 Score=69.07 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=45.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 837 TMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.+|+||.|+|||.++...+...+......++++++|+...++++.+++.+.
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~ 52 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKEL 52 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHH
Confidence 689999999999998888777666666789999999999999999999874
No 147
>PRK09694 helicase Cas3; Provisional
Probab=95.74 E-value=0.028 Score=74.78 Aligned_cols=70 Identities=20% Similarity=0.282 Sum_probs=59.6
Q ss_pred CCCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 817 SVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
....+|-|..+......+++.+|.+|.|+|||..+..++..++......+|+++.||-..+|++++++.+
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~ 353 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEA 353 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHH
Confidence 3456788987755445789999999999999999998888888775568999999999999999999875
No 148
>PRK10867 signal recognition particle protein; Provisional
Probab=95.74 E-value=0.02 Score=70.55 Aligned_cols=56 Identities=30% Similarity=0.423 Sum_probs=39.5
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec---CHHHHHHHHHHHHhcCCC
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH---SNQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~---SN~AlD~L~ekL~~l~i~ 890 (1456)
+.+.++.||||+|||||++.++..+... .+.+|++++. .-.|.+++.......+++
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~-~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~ 158 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK-KKKKVLLVAADVYRPAAIEQLKTLGEQIGVP 158 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh-cCCcEEEEEccccchHHHHHHHHHHhhcCCe
Confidence 4678899999999999999999887655 3567776653 334556665444444544
No 149
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.73 E-value=0.02 Score=68.01 Aligned_cols=54 Identities=24% Similarity=0.270 Sum_probs=39.2
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec---CHHHHHHHHHHHHhcCC
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH---SNQALNDLFEKIMQRDV 889 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~---SN~AlD~L~ekL~~l~i 889 (1456)
+.+.++.||||+|||||++.++..+... +.+|++++- ...|++++.......++
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~--g~~V~Li~~D~~r~~a~eql~~~a~~~~i 170 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQ--GKKVLLAAGDTFRAAAIEQLQVWGERVGV 170 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc--CCeEEEEecCccchhhHHHHHHHHHHcCc
Confidence 4688899999999999999999887654 678887763 33466776544444443
No 150
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.70 E-value=0.012 Score=67.82 Aligned_cols=38 Identities=37% Similarity=0.526 Sum_probs=31.6
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
+..=.++.||||||||+++++|...+++. +.+|++++-
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~--g~sv~f~~~ 141 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKA--GISVLFITA 141 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEEH
Confidence 34457899999999999999999999954 777777764
No 151
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.67 E-value=0.02 Score=63.89 Aligned_cols=41 Identities=10% Similarity=0.158 Sum_probs=31.7
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHH
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQ 875 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~ 875 (1456)
.++..+|.||||||||+++..+...+... +.+++.+..++.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~ 77 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAEL 77 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHH
Confidence 56788999999999999999988887654 556666655443
No 152
>PRK08727 hypothetical protein; Validated
Probab=95.61 E-value=0.032 Score=63.39 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=32.3
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCH
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSN 874 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN 874 (1456)
.....+|+||||||||+++..++..+... +.+++.++...
T Consensus 40 ~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~ 79 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA 79 (233)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH
Confidence 34568999999999999999999888766 66777777543
No 153
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=95.60 E-value=0.041 Score=64.63 Aligned_cols=68 Identities=15% Similarity=0.244 Sum_probs=48.5
Q ss_pred CCHHHHHH---HHhcc-CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCC----CcEEEEecCHHHHHHHHHHHHhc
Q 000509 820 FTPTQVGA---IISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPS----QRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 820 Ln~sQ~eA---I~sal-~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~----~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.-+.|.+. |..++ ..+..+|.+|.|||||..+...+...+...+. .+|+++++|+.-..+.+..+.+.
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 36789884 33343 56788999999999997666555333333233 38999999999888887777654
No 154
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=95.60 E-value=0.041 Score=64.63 Aligned_cols=68 Identities=15% Similarity=0.244 Sum_probs=48.5
Q ss_pred CCHHHHHH---HHhcc-CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCC----CcEEEEecCHHHHHHHHHHHHhc
Q 000509 820 FTPTQVGA---IISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPS----QRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 820 Ln~sQ~eA---I~sal-~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~----~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.-+.|.+. |..++ ..+..+|.+|.|||||..+...+...+...+. .+|+++++|+.-..+.+..+.+.
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 36789884 33343 56788999999999997666555333333233 38999999999888887777654
No 155
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.016 Score=67.26 Aligned_cols=62 Identities=29% Similarity=0.418 Sum_probs=40.8
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCC---CcEEE--Eec---------CHHHHHHHHHHHHhcCCCcccEE
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPS---QRTLI--ITH---------SNQALNDLFEKIMQRDVPARYLL 895 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~---~rILI--vA~---------SN~AlD~L~ekL~~l~i~e~~ll 895 (1456)
+++.++.||||||||++-.+++..|--+..+ .-+|| -|| |-.-+..+|++|.++--++..++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lV 252 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLV 252 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEE
Confidence 5789999999999999999888877533211 22333 333 45567778888877643333333
No 156
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.58 E-value=0.025 Score=69.66 Aligned_cols=56 Identities=27% Similarity=0.366 Sum_probs=39.3
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec-CH--HHHHHHHHHHHhcCCC
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH-SN--QALNDLFEKIMQRDVP 890 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~-SN--~AlD~L~ekL~~l~i~ 890 (1456)
+.+.++.||||+|||||++.++..+.... +.+|++++. +. .|.+++.......+++
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~-g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp 157 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQ-GKKVLLVACDLYRPAAIEQLKVLGQQVGVP 157 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhC-CCeEEEEeccccchHHHHHHHHHHHhcCCc
Confidence 46889999999999999999999876332 667766653 33 3566665544445554
No 157
>PRK04296 thymidine kinase; Provisional
Probab=95.57 E-value=0.014 Score=64.15 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=30.4
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
+++|.||||+|||+.+..++..+... +.+++++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEec
Confidence 68999999999999999999888766 788888843
No 158
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.56 E-value=0.016 Score=64.23 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=33.3
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSN 874 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN 874 (1456)
..+++|.||||||||+++.+++.+...+ +.+++.++..+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~ 50 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG 50 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC
Confidence 4589999999999999999999888776 77888887754
No 159
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.55 E-value=0.016 Score=62.22 Aligned_cols=34 Identities=29% Similarity=0.536 Sum_probs=29.0
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEe
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT 871 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA 871 (1456)
+.++.||||+|||+++..++..+... +.+++++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~--g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK--GKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEE
Confidence 57899999999999999999888766 67887766
No 160
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.53 E-value=0.025 Score=69.47 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=36.0
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec-C--HHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH-S--NQALNDLFE 882 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~-S--N~AlD~L~e 882 (1456)
+++.++.||||+|||||++.++..+... +.+|++++. + -.|.+++-.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~--G~kV~lV~~D~~R~aA~eQLk~ 149 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRK--GFKPCLVCADTFRAGAFDQLKQ 149 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEcCcccchhHHHHHHH
Confidence 5688999999999999999999877554 678777664 3 356666643
No 161
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.52 E-value=0.028 Score=67.12 Aligned_cols=37 Identities=24% Similarity=0.211 Sum_probs=31.2
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
..-.++.||||||||+++..++..++.. +.+|+.++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEEH
Confidence 3568999999999999999999999876 677777664
No 162
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.49 E-value=0.028 Score=60.27 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=28.3
Q ss_pred HHHHHHHHhcc------CCCcEEEEcCCCCChHHHHHHHHHHHHHc
Q 000509 822 PTQVGAIISGI------QPGLTMVVGPPGTGKTDTAVQILNVLYHN 861 (1456)
Q Consensus 822 ~sQ~eAI~sal------~~gltLI~GPPGTGKT~tia~iI~~L~~~ 861 (1456)
.+|.+.+...+ .+...+|.||||||||+++..+...+...
T Consensus 6 ~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 6 EEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 45677776666 35689999999999999999988888776
No 163
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.49 E-value=0.017 Score=66.48 Aligned_cols=57 Identities=26% Similarity=0.407 Sum_probs=43.8
Q ss_pred hcc-CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCC
Q 000509 830 SGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDV 889 (1456)
Q Consensus 830 sal-~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i 889 (1456)
-++ ..+.++|.|+||||||..+.+.+...+.. +.+++.+|..-.+-+ +.+.....+.
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~~~-l~~~~~~~g~ 75 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESPEE-LLENARSFGW 75 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCCHHH-HHHHHHHcCC
Confidence 344 35689999999999999999999999987 899999998665543 4444444443
No 164
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.48 E-value=0.011 Score=59.24 Aligned_cols=22 Identities=36% Similarity=0.770 Sum_probs=19.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+|.|||||||||++..++..+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999888766
No 165
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.44 E-value=0.036 Score=65.31 Aligned_cols=56 Identities=25% Similarity=0.333 Sum_probs=45.8
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEe---cCHHHHHHHHHHHHhcCCC
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT---HSNQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA---~SN~AlD~L~ekL~~l~i~ 890 (1456)
.|-+.|++|.-||||||||+.++.++..+ +.+|++.| +--.|++||-.--...+++
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~--g~~VllaA~DTFRAaAiEQL~~w~er~gv~ 196 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQ--GKSVLLAAGDTFRAAAIEQLEVWGERLGVP 196 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHC--CCeEEEEecchHHHHHHHHHHHHHHHhCCe
Confidence 36688999999999999999999999877 88988887 4566778886666666665
No 166
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.41 E-value=0.019 Score=64.18 Aligned_cols=40 Identities=35% Similarity=0.559 Sum_probs=32.8
Q ss_pred ccC-CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 831 GIQ-PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 831 al~-~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
++. ..+++|.||||||||+++.+++..+... +.++++++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~ 55 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDT 55 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEC
Confidence 443 4588999999999999999999888765 778888753
No 167
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.40 E-value=0.026 Score=61.43 Aligned_cols=54 Identities=28% Similarity=0.461 Sum_probs=38.7
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHHcC--------CCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVLYHNC--------PSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L~~~~--------p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
...+++|.||||+|||+++.+++..+.... .+.+||+++.-+. ..++..++...
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~ 92 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRAL 92 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHH
Confidence 356999999999999999999999988521 3578999988776 45666776643
No 168
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.35 E-value=0.035 Score=65.02 Aligned_cols=49 Identities=27% Similarity=0.427 Sum_probs=35.6
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCH---HHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSN---QALNDLFE 882 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN---~AlD~L~e 882 (1456)
+++.+|.||.|+|||||++.++..+.....+.+|.+++--. .|+.++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~ 245 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKT 245 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHH
Confidence 46889999999999999999998887542246777776433 24555533
No 169
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=95.34 E-value=0.024 Score=59.65 Aligned_cols=51 Identities=22% Similarity=0.353 Sum_probs=42.0
Q ss_pred CcEEEEcCCCCChHH-HHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 835 GLTMVVGPPGTGKTD-TAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 835 gltLI~GPPGTGKT~-tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.+++|.=.||+|||+ ++.+++..-+.. +.|+||++||...++++.+.|...
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~~--~~rvLvL~PTRvva~em~~aL~~~ 56 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAIKR--RLRVLVLAPTRVVAEEMYEALKGL 56 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHHHT--T--EEEEESSHHHHHHHHHHTTTS
T ss_pred ceeEEecCCCCCCcccccHHHHHHHHHc--cCeEEEecccHHHHHHHHHHHhcC
Confidence 478999999999999 799999888877 899999999999999999988654
No 170
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.34 E-value=0.02 Score=68.86 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHhcc-------CCCcEEEEcCCCCChHHHHHHHHHHHHHc
Q 000509 819 RFTPTQVGAIISGI-------QPGLTMVVGPPGTGKTDTAVQILNVLYHN 861 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal-------~~gltLI~GPPGTGKT~tia~iI~~L~~~ 861 (1456)
.--+.|.+.|...+ .++..+|.||||||||+++..++..+...
T Consensus 18 ~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~ 67 (365)
T TIGR02928 18 VHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEA 67 (365)
T ss_pred CCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 33467777766554 24678999999999999999888877543
No 171
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.32 E-value=0.036 Score=67.53 Aligned_cols=58 Identities=26% Similarity=0.280 Sum_probs=40.2
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHHcC--CCCcEEEEec-C--HHHHHHHHHHHHhcCCC
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVLYHNC--PSQRTLIITH-S--NQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L~~~~--p~~rILIvA~-S--N~AlD~L~ekL~~l~i~ 890 (1456)
.+++.++.||+|+|||||++.++..+.... .+.+|.+++- + ..|..++......++++
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvp 235 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP 235 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcc
Confidence 357899999999999999999998776432 3567766653 3 56667754433335554
No 172
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.31 E-value=0.051 Score=70.60 Aligned_cols=73 Identities=14% Similarity=0.221 Sum_probs=62.1
Q ss_pred CCCCCCCCCHHHHHHHHhccC----CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 813 PRQNSVRFTPTQVGAIISGIQ----PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 813 p~~n~v~Ln~sQ~eAI~sal~----~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
...+...||+.|..|+..... ....++.|.+|+|||.+-.++|...+.. ++.+||+.|--.-..++.+++...
T Consensus 192 ~~~~~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~--GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 192 SLSEWLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ--GKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred ccccccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc--CCEEEEEeccccchHHHHHHHHHH
Confidence 333567899999999876653 3689999999999999999999999988 899999999888888888888753
No 173
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.28 E-value=0.036 Score=62.30 Aligned_cols=50 Identities=8% Similarity=0.100 Sum_probs=35.3
Q ss_pred CHHHHHHHHhcc----CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 821 TPTQVGAIISGI----QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 821 n~sQ~eAI~sal----~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
|.....+++... ..+..+|.||||||||+++..+...+... +.++.+++.
T Consensus 25 ~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~--~~~~~~i~~ 78 (227)
T PRK08903 25 NAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG--GRNARYLDA 78 (227)
T ss_pred cHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEeh
Confidence 445555555542 34678999999999999999888877654 555555554
No 174
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.27 E-value=0.021 Score=65.89 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=21.9
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHc
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHN 861 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~ 861 (1456)
..++.||||||||+++..++..+...
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~~~ 69 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFKEM 69 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999888777543
No 175
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.24 E-value=0.031 Score=62.86 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=41.9
Q ss_pred hccCC-CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCC
Q 000509 830 SGIQP-GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 830 sal~~-gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~ 890 (1456)
-++.+ .+++|.||||||||+++.+++.+.+.+ ++++++++.- ...+++.++....+++
T Consensus 15 GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e-~~~~~i~~~~~~~g~~ 73 (229)
T TIGR03881 15 GGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTE-ESRESIIRQAAQFGMD 73 (229)
T ss_pred CCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEcc-CCHHHHHHHHHHhCCC
Confidence 34543 488999999999999999988777654 7788888753 3345666665555544
No 176
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.23 E-value=0.019 Score=59.34 Aligned_cols=41 Identities=37% Similarity=0.534 Sum_probs=28.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLF 881 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ 881 (1456)
.+++||||||||+++-.++..+ ...-+.+.+++..-..+++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~----~~~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL----GRPVIRINCSSDTTEEDLI 42 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH----TCEEEEEE-TTTSTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh----hcceEEEEeccccccccce
Confidence 5899999999999999888777 1333445555555555554
No 177
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.19 E-value=0.038 Score=66.93 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=40.7
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec-CH--HHHHHHHHHHHhcCCC
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH-SN--QALNDLFEKIMQRDVP 890 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~-SN--~AlD~L~ekL~~l~i~ 890 (1456)
++..+|.||+|+||||+++.++..+... +.++++++- +. .|++++.......+++
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~--GkkVglI~aDt~RiaAvEQLk~yae~lgip 298 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFE 298 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHhhhcCCc
Confidence 4678999999999999999999888755 677776664 33 4778876654444443
No 178
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.17 E-value=0.019 Score=66.62 Aligned_cols=27 Identities=41% Similarity=0.566 Sum_probs=23.2
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYH 860 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~ 860 (1456)
.+..+..||||||||.||...++.|.-
T Consensus 57 lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 357889999999999999998888753
No 179
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.16 E-value=0.038 Score=66.83 Aligned_cols=45 Identities=22% Similarity=0.412 Sum_probs=32.6
Q ss_pred CCCCCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHc
Q 000509 815 QNSVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHN 861 (1456)
Q Consensus 815 ~n~v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~ 861 (1456)
...+.|.+.-.+++. ...|+.+|.||.|+||||++..++..+...
T Consensus 117 l~~l~~~~~~~~~~~--~~~glilI~GpTGSGKTTtL~aLl~~i~~~ 161 (358)
T TIGR02524 117 LSKLDLPAAIIDAIA--PQEGIVFITGATGSGKSTLLAAIIRELAEA 161 (358)
T ss_pred HHHcCCCHHHHHHHh--ccCCEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 334455544444443 257999999999999999999888777654
No 180
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.14 E-value=0.032 Score=64.59 Aligned_cols=48 Identities=23% Similarity=0.497 Sum_probs=35.0
Q ss_pred CCCCCCCCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHc
Q 000509 812 QPRQNSVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHN 861 (1456)
Q Consensus 812 ~p~~n~v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~ 861 (1456)
.|......+.+-=.+ ......|+.||.||-|||||||++.+|.++=++
T Consensus 105 i~~~e~LglP~i~~~--~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~ 152 (353)
T COG2805 105 IPTLEELGLPPIVRE--LAESPRGLILVTGPTGSGKSTTLAAMIDYINKH 152 (353)
T ss_pred CCCHHHcCCCHHHHH--HHhCCCceEEEeCCCCCcHHHHHHHHHHHHhcc
Confidence 344444555554444 233468999999999999999999999988655
No 181
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.14 E-value=0.013 Score=60.39 Aligned_cols=22 Identities=36% Similarity=0.761 Sum_probs=18.4
Q ss_pred cEEEEcCCCCChHHHHHHHHHH
Q 000509 836 LTMVVGPPGTGKTDTAVQILNV 857 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~ 857 (1456)
+.++.|||||||||++..+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999998876543
No 182
>PF05729 NACHT: NACHT domain
Probab=95.14 E-value=0.03 Score=58.65 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=25.9
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCC
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPS 864 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~ 864 (1456)
++.+|.|+||+|||+++..++..+....+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~ 30 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPP 30 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcc
Confidence 367999999999999999999999877543
No 183
>KOG2108 consensus 3'-5' DNA helicase [Replication, recombination and repair]
Probab=95.12 E-value=0.017 Score=74.18 Aligned_cols=66 Identities=21% Similarity=0.244 Sum_probs=51.4
Q ss_pred CCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcC--CCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 820 FTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNC--PSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 820 Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~--p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
|+.+|..+..+- -++.-+|.| ||||||.++...+.+++... +..-|++.|.+|.|+|.+.+++...
T Consensus 14 l~~~q~~~~~~~-~~~~rviag-pgsgkt~~lt~~v~yli~~~~ik~~eI~~~t~tnka~~~~~~~l~~i 81 (853)
T KOG2108|consen 14 LNKSQRFSALSP-LRRKRVIAG-PGSGKTLVLTERVAYLINFNNIKPDEILINTGTNKAADSIKLNLIAI 81 (853)
T ss_pred hhhhhhhhhcCC-Ccccceeec-CCCCccchhhHHHHHHHhccCCCHHHHHHHhcCCccHHHHHHhHHHH
Confidence 556666665543 356678999 89999999999999886432 2356999999999999999998763
No 184
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.10 E-value=0.025 Score=62.62 Aligned_cols=38 Identities=32% Similarity=0.639 Sum_probs=27.9
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
.|+.+|.||+|+||||++..++..+... .+.+|+.+..
T Consensus 1 ~GlilI~GptGSGKTTll~~ll~~~~~~-~~~~i~t~e~ 38 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLAAMIDYINKN-KTHHILTIED 38 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhhhc-CCcEEEEEcC
Confidence 4889999999999999998887776543 2345554433
No 185
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.10 E-value=0.037 Score=65.78 Aligned_cols=53 Identities=21% Similarity=0.389 Sum_probs=39.6
Q ss_pred HHHHHH--hccCCC-cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHH
Q 000509 824 QVGAII--SGIQPG-LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALND 879 (1456)
Q Consensus 824 Q~eAI~--sal~~g-ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~ 879 (1456)
..+++. -++.+| +++|.||||||||+++.+++....+. +.+++++..-+ +.+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~-~~~~ 97 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEH-ALDP 97 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccc-hhHH
Confidence 444444 467555 99999999999999999999888776 78888776543 4443
No 186
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.10 E-value=0.022 Score=71.47 Aligned_cols=46 Identities=28% Similarity=0.449 Sum_probs=38.3
Q ss_pred CCCCCCCCCHHHHHHHHhcc--CCCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 813 PRQNSVRFTPTQVGAIISGI--QPGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 813 p~~n~v~Ln~sQ~eAI~sal--~~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
+.+....|++.|.+.+...+ ..|+.+|.||+|||||||+..++..+
T Consensus 219 ~~l~~Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l 266 (486)
T TIGR02533 219 LDLETLGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRL 266 (486)
T ss_pred CCHHHcCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhcc
Confidence 44556788999999998776 46899999999999999998776655
No 187
>PF13173 AAA_14: AAA domain
Probab=95.08 E-value=0.034 Score=57.02 Aligned_cols=43 Identities=26% Similarity=0.417 Sum_probs=35.6
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALND 879 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~ 879 (1456)
.++.+|.||.|+|||+++.+++..+. +.++++.+...+.....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~ 44 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRR 44 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHH
Confidence 56899999999999999999998887 46788888776666543
No 188
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.08 E-value=0.035 Score=69.79 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=44.2
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCC
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~ 890 (1456)
...++|.||||||||+++.+.+.+-+.+ .++++|.++.- ...+++.+...+++.+
T Consensus 21 g~~~Li~G~pGsGKT~la~qfl~~g~~~-~ge~~lyvs~e-E~~~~l~~~~~~~G~~ 75 (484)
T TIGR02655 21 GRSTLVSGTSGTGKTLFSIQFLYNGIIH-FDEPGVFVTFE-ESPQDIIKNARSFGWD 75 (484)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEe-cCHHHHHHHHHHcCCC
Confidence 5689999999999999999987664443 26899999985 6668888888887764
No 189
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.08 E-value=0.1 Score=68.87 Aligned_cols=64 Identities=20% Similarity=0.206 Sum_probs=47.9
Q ss_pred HHHHHHHhcc-CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 823 TQVGAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 823 sQ~eAI~sal-~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.....|..++ ++.+.+|.||||+||||-+-+.+....- ..+.+|.++=|-.-|+-.+.+|+.+.
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-~~~g~I~~tQPRRlAArsvA~RvAee 117 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-GIAGKIGCTQPRRLAARSVAERVAEE 117 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-ccCCeEEecCchHHHHHHHHHHHHHH
Confidence 3455565555 6889999999999999988877654432 22467888888899998888888753
No 190
>PRK10436 hypothetical protein; Provisional
Probab=95.07 E-value=0.024 Score=70.49 Aligned_cols=47 Identities=32% Similarity=0.516 Sum_probs=39.1
Q ss_pred CCCCCCCCCHHHHHHHHhcc--CCCcEEEEcCCCCChHHHHHHHHHHHH
Q 000509 813 PRQNSVRFTPTQVGAIISGI--QPGLTMVVGPPGTGKTDTAVQILNVLY 859 (1456)
Q Consensus 813 p~~n~v~Ln~sQ~eAI~sal--~~gltLI~GPPGTGKT~tia~iI~~L~ 859 (1456)
+.+....|.+.|.+.+...+ ..|+.+|.||.|+|||||+..++..+.
T Consensus 195 ~~L~~LG~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred CCHHHcCcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 34556778999999998765 679999999999999999988877653
No 191
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.05 E-value=0.047 Score=67.49 Aligned_cols=56 Identities=23% Similarity=0.293 Sum_probs=37.2
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec-CH--HHHHHHHHHHHhcCC
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH-SN--QALNDLFEKIMQRDV 889 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~-SN--~AlD~L~ekL~~l~i 889 (1456)
.++.++.||+|+|||||++.++..+.....+.+|.+++. +. .|++++...-...++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~v 279 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGI 279 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCC
Confidence 357889999999999999999988762223567776664 32 255555443333343
No 192
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.05 E-value=0.038 Score=66.23 Aligned_cols=42 Identities=31% Similarity=0.408 Sum_probs=26.3
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHH
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFE 882 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~e 882 (1456)
-.+.|||||||||+++..|+... +..+.-++.+..-+.++-+
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~-----~~~f~~~sAv~~gvkdlr~ 91 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTT-----NAAFEALSAVTSGVKDLRE 91 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhh-----CCceEEeccccccHHHHHH
Confidence 36789999999998887555433 3444445544444444433
No 193
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.04 E-value=0.014 Score=65.50 Aligned_cols=24 Identities=46% Similarity=0.621 Sum_probs=18.1
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
+..+.+|||||||||++.-|+..+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCccchhHHHHHHHhcc
Confidence 467999999999998777555444
No 194
>PLN03025 replication factor C subunit; Provisional
Probab=95.01 E-value=0.043 Score=65.22 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=30.3
Q ss_pred CCHHHHHHHHhccC---CCcEEEEcCCCCChHHHHHHHHHHHHHc
Q 000509 820 FTPTQVGAIISGIQ---PGLTMVVGPPGTGKTDTAVQILNVLYHN 861 (1456)
Q Consensus 820 Ln~sQ~eAI~sal~---~gltLI~GPPGTGKT~tia~iI~~L~~~ 861 (1456)
-++...+.++..+. .+..+++||||||||+++..++..++..
T Consensus 17 g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~ 61 (319)
T PLN03025 17 GNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 61 (319)
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34555555554442 2457899999999999999999888643
No 195
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.97 E-value=0.048 Score=71.69 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=50.2
Q ss_pred HHHHHHHHhc---c-CCCcEEEEcCCCCChHH-HHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 822 PTQVGAIISG---I-QPGLTMVVGPPGTGKTD-TAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 822 ~sQ~eAI~sa---l-~~gltLI~GPPGTGKT~-tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
|.|.+.+... + ..+..++.+|.|||||- ++...++++.++....||..||.|++-+.++++.|.+.
T Consensus 13 ~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 13 PEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred HHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 5787776543 3 56789999999999994 45555555544422479999999999999999998874
No 196
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=94.97 E-value=0.092 Score=67.73 Aligned_cols=76 Identities=22% Similarity=0.236 Sum_probs=62.5
Q ss_pred CCCCCCCCCCHHHHHHHHhcc-----CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 812 QPRQNSVRFTPTQVGAIISGI-----QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 812 ~p~~n~v~Ln~sQ~eAI~sal-----~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
.+-...+.+-..|..||+... .+.-.||+=.+|||||.||.++|-.|++..--+|||.++-.|.-++|..+...+
T Consensus 158 ~~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 158 IDIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred CcccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHH
Confidence 333445667789999998654 233488888999999999999999999987779999999999999999888766
Q ss_pred c
Q 000509 887 R 887 (1456)
Q Consensus 887 l 887 (1456)
.
T Consensus 238 ~ 238 (875)
T COG4096 238 F 238 (875)
T ss_pred h
Confidence 4
No 197
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.96 E-value=0.039 Score=68.76 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=37.1
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEK 883 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ek 883 (1456)
+..+|.||||||||+++..+...+..+.++.+++.++... ..+.+...
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~-~~~~~~~~ 196 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK-FTNDFVNA 196 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH-HHHHHHHH
Confidence 4579999999999999999999998887788888776543 24444333
No 198
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.93 E-value=0.043 Score=68.14 Aligned_cols=37 Identities=32% Similarity=0.380 Sum_probs=33.1
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
..+|.||||||||+++..+...+....++.+++.++.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 5899999999999999999999988888888888875
No 199
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=94.92 E-value=0.091 Score=69.27 Aligned_cols=67 Identities=18% Similarity=0.038 Sum_probs=49.0
Q ss_pred CCCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHH-HHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 817 SVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILN-VLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~-~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
++.++|.|.++|-..+...=.+.+.+.|||||.+.+--+. +++ .+..++|+|+|..-+.+..+-+..
T Consensus 90 p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL---~g~~v~IVTpTrELA~Qdae~m~~ 157 (970)
T PRK12899 90 QWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNAL---TGKPVHLVTVNDYLAQRDCEWVGS 157 (970)
T ss_pred CCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHh---hcCCeEEEeCCHHHHHHHHHHHHH
Confidence 4668899999997766433378899999999988775443 333 245699999999877777665543
No 200
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.91 E-value=0.045 Score=66.57 Aligned_cols=41 Identities=29% Similarity=0.509 Sum_probs=30.4
Q ss_pred HHHHHHHHhcc-------CCCcEEEEcCCCCChHHHHHHHHHHHHHcC
Q 000509 822 PTQVGAIISGI-------QPGLTMVVGPPGTGKTDTAVQILNVLYHNC 862 (1456)
Q Consensus 822 ~sQ~eAI~sal-------~~gltLI~GPPGTGKT~tia~iI~~L~~~~ 862 (1456)
+.|.+.+...+ .++..+|.||||||||+++..++..+-...
T Consensus 36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 45555555443 345689999999999999999988876553
No 201
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.87 E-value=0.048 Score=67.83 Aligned_cols=58 Identities=17% Similarity=0.354 Sum_probs=44.9
Q ss_pred hccC-CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCC
Q 000509 830 SGIQ-PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 830 sal~-~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~ 890 (1456)
-++. ..+++|.||||+|||+++.+++..+..+ +.++|.++... ..+++..+...++++
T Consensus 75 GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ee-s~~qi~~ra~rlg~~ 133 (446)
T PRK11823 75 GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEE-SASQIKLRAERLGLP 133 (446)
T ss_pred CCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccc-cHHHHHHHHHHcCCC
Confidence 3453 4488999999999999999999888755 78999998654 456777776666654
No 202
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.85 E-value=0.019 Score=74.78 Aligned_cols=55 Identities=13% Similarity=0.204 Sum_probs=43.8
Q ss_pred CCceeecccCCCCccCCEEEEEecccCCcc--------cc-ccchhhHHHHhhhhccEEEEech
Q 000509 1233 PPSKVTTVDKFQGQQNDFILLSLVRTRFVG--------HL-RDVRRLVVAMSRARLGLYVFCRR 1287 (1456)
Q Consensus 1233 ~~v~V~TVD~fQG~E~DvVIlSlVRs~~~G--------fL-~d~rRLNVAlSRAR~~LiIvGn~ 1287 (1456)
..|.++|+|+.+|.|+++|||..+...... -+ .+.|.++|||||||..||+....
T Consensus 550 d~V~l~TiH~sKGLEf~~Vfv~gl~eg~~P~~~~~~~~~~~EErRlfYVA~TRAk~~L~Ls~~~ 613 (664)
T TIGR01074 550 DQVQLMTLHASKGLEFPYVFIVGMEEGILPHQSSIEEDNVEEERRLAYVGITRAQKELTFTLCK 613 (664)
T ss_pred CeEEEEeeecccCccCCeEEEeCCcCCCCCCccccccchHHHHHHHHHHhhhhhhheeEEEehh
Confidence 359999999999999999999888765322 12 23455699999999999999754
No 203
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.80 E-value=0.047 Score=64.94 Aligned_cols=42 Identities=21% Similarity=0.351 Sum_probs=35.0
Q ss_pred ccCCC-cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCH
Q 000509 831 GIQPG-LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSN 874 (1456)
Q Consensus 831 al~~g-ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN 874 (1456)
++..| ++.|.||||||||+++.+++.+.... +.+++++..-+
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~ 93 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEH 93 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccc
Confidence 56554 99999999999999999999888776 77888887644
No 204
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=94.79 E-value=0.04 Score=70.47 Aligned_cols=46 Identities=33% Similarity=0.596 Sum_probs=38.6
Q ss_pred CCCCCCCCCHHHHHHHHhcc--CCCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 813 PRQNSVRFTPTQVGAIISGI--QPGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 813 p~~n~v~Ln~sQ~eAI~sal--~~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
+.+....|.+.|.+.+...+ ..|+.+|.||+|+|||||+..++..+
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~~ 340 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNIL 340 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 34556788999999998766 47999999999999999998877665
No 205
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=94.77 E-value=1.6 Score=53.77 Aligned_cols=69 Identities=20% Similarity=0.217 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHhccCCCcEEEEcCCCCChHHH-HHHHHHHHHHcCC----CCcEEEEecCHHHHHHHHHHHHhc
Q 000509 819 RFTPTQVGAIISGIQPGLTMVVGPPGTGKTDT-AVQILNVLYHNCP----SQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~t-ia~iI~~L~~~~p----~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.+|+-|...|.-.+...=.++..--|||||.- +.-++..+++..+ +-.+||||||..-+-|++..+.++
T Consensus 104 ~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~L 177 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKEL 177 (543)
T ss_pred chhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHH
Confidence 57888888888777666678889999999964 2334444444332 356999999999999888776654
No 206
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.76 E-value=0.043 Score=63.48 Aligned_cols=24 Identities=33% Similarity=0.456 Sum_probs=20.4
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHH
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILN 856 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~ 856 (1456)
.....++.||||||||+++..+..
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHH
Confidence 456789999999999999987765
No 207
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.76 E-value=0.04 Score=65.35 Aligned_cols=41 Identities=27% Similarity=0.475 Sum_probs=30.0
Q ss_pred CHHHHHHHHhccCC---CcEEEEcCCCCChHHHHHHHHHHHHHc
Q 000509 821 TPTQVGAIISGIQP---GLTMVVGPPGTGKTDTAVQILNVLYHN 861 (1456)
Q Consensus 821 n~sQ~eAI~sal~~---gltLI~GPPGTGKT~tia~iI~~L~~~ 861 (1456)
++...+.+...+.. +..++.||||||||+++..++..+...
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~ 63 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD 63 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 45555555555432 368999999999999999988877643
No 208
>PRK06851 hypothetical protein; Provisional
Probab=94.75 E-value=0.022 Score=68.71 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=40.0
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHH
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLF 881 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ 881 (1456)
...+.+|.||||||||+++.+++..+....-.--.+.|+..|.++|-++
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~~slDgvi 77 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDNDSLDGVI 77 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCCceeeEE
Confidence 3578999999999999999999998887632334778888898998764
No 209
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.72 E-value=0.059 Score=65.46 Aligned_cols=57 Identities=16% Similarity=0.320 Sum_probs=44.0
Q ss_pred ccC-CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCC
Q 000509 831 GIQ-PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 831 al~-~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~ 890 (1456)
++. ..+++|.||||+|||+++.+++..+... +.++|+++... ..+++..+...++++
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EE-s~~qi~~Ra~rlg~~ 135 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEE-SPEQIKLRADRLGIS 135 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCc-CHHHHHHHHHHcCCC
Confidence 443 4589999999999999999999888765 67999988754 356777666666554
No 210
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.72 E-value=0.023 Score=63.37 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=23.4
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYH 860 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~ 860 (1456)
-+-.+|.|||||||||.+..++..|+-
T Consensus 48 mP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 48 MPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred CCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 356899999999999999988888874
No 211
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.72 E-value=0.038 Score=67.87 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=32.7
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
+..+|.||||||||+++.++...+..+.++.+++.++.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH
Confidence 35789999999999999999999988777788888764
No 212
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.71 E-value=0.047 Score=67.27 Aligned_cols=65 Identities=22% Similarity=0.382 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHhcc-CCCcEEEEcCCCCChHHHHHHHHHHHHHcC-CCCcEEEEecCHHHHHHHHH
Q 000509 818 VRFTPTQVGAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNC-PSQRTLIITHSNQALNDLFE 882 (1456)
Q Consensus 818 v~Ln~sQ~eAI~sal-~~gltLI~GPPGTGKT~tia~iI~~L~~~~-p~~rILIvA~SN~AlD~L~e 882 (1456)
+-..+...+.+..++ ..+..++.||||||||+++..++..+.... ......|+.|.+.+...++.
T Consensus 177 ~~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 177 LFIPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred ccCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 344566666776666 567788999999999999987776664321 12233455555555544443
No 213
>PHA00729 NTP-binding motif containing protein
Probab=94.70 E-value=0.038 Score=62.41 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=21.5
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHH
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLY 859 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~ 859 (1456)
-.+|.||||||||+++..++..+.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988875
No 214
>PRK05642 DNA replication initiation factor; Validated
Probab=94.69 E-value=0.042 Score=62.52 Aligned_cols=36 Identities=11% Similarity=0.179 Sum_probs=29.2
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
+..+|+||+|||||+++..+...+... +.+++.++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeH
Confidence 567899999999999988887777654 677877765
No 215
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.63 E-value=0.061 Score=67.07 Aligned_cols=61 Identities=25% Similarity=0.439 Sum_probs=45.9
Q ss_pred ccC-CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCCcccE
Q 000509 831 GIQ-PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYL 894 (1456)
Q Consensus 831 al~-~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~e~~l 894 (1456)
++. ..+++|.|+||+|||+++.+++.++.++ +.++|+++.-. ...++..+...++++...+
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EE-s~~qi~~ra~rlg~~~~~l 151 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVSGEE-SLQQIKMRAIRLGLPEPNL 151 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECcC-CHHHHHHHHHHcCCChHHe
Confidence 444 3589999999999999999999988876 67899988654 3567777766666544333
No 216
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.61 E-value=0.23 Score=63.40 Aligned_cols=59 Identities=19% Similarity=0.208 Sum_probs=51.2
Q ss_pred HHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 828 IISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 828 I~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
+........|++.=|==.|||.+++.+|..++..+++.+|+++||.....+.++++|..
T Consensus 248 ~~~~fkqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~ 306 (738)
T PHA03368 248 AVRHFRQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGA 306 (738)
T ss_pred HHHHhhccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHH
Confidence 33444567899999999999999998888888888899999999999999999999875
No 217
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.59 E-value=0.06 Score=62.14 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=41.7
Q ss_pred hccCC-CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 830 SGIQP-GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 830 sal~~-gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
.++.+ .+++|.||||+|||+++.+++.++.... +.++++++.-. ..+++..++..
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~-g~~vl~iS~E~-~~~~~~~r~~~ 80 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTTFLREYALDLITQH-GVRVGTISLEE-PVVRTARRLLG 80 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc-CceEEEEEccc-CHHHHHHHHHH
Confidence 35544 4999999999999999999998876542 68899998755 34566666654
No 218
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.57 E-value=0.052 Score=59.43 Aligned_cols=49 Identities=24% Similarity=0.465 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHhccC-CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEE
Q 000509 819 RFTPTQVGAIISGIQ-PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLII 870 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~-~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIv 870 (1456)
.+++.|.+.+...+. .+..+|.||+|+||||++..++..+ . +..+++.+
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i-~--~~~~~i~i 58 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFI-P--PDERIITI 58 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc-C--CCCCEEEE
Confidence 367889999988874 5688999999999999987765443 2 34555544
No 219
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.57 E-value=0.058 Score=68.25 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=46.4
Q ss_pred ccC-CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCC
Q 000509 831 GIQ-PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 831 al~-~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~ 890 (1456)
++. ..+++|.||||||||+++.+++...+.+ +.++++++.... .+++.+.+..++++
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~--g~~~~yis~e~~-~~~i~~~~~~~g~~ 326 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRR--GERCLLFAFEES-RAQLIRNARSWGID 326 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCC-HHHHHHHHHHcCCC
Confidence 443 4588999999999999999999888876 899999987654 66788887776654
No 220
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.57 E-value=0.26 Score=60.04 Aligned_cols=67 Identities=24% Similarity=0.341 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHH-HHHHHHHcC---CCC--cEEEEecCHHHHHHHHHHHH
Q 000509 819 RFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQ-ILNVLYHNC---PSQ--RTLIITHSNQALNDLFEKIM 885 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~-iI~~L~~~~---p~~--rILIvA~SN~AlD~L~ekL~ 885 (1456)
.+||-|..+|-..+.+.=.+|..|.|||||.--+. ++..++... +.. --||++||..-.-||.+-+.
T Consensus 28 ~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~ 100 (567)
T KOG0345|consen 28 KMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQ 100 (567)
T ss_pred ccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHH
Confidence 57999999999888888899999999999975444 344444432 222 57999999998888876554
No 221
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.54 E-value=0.042 Score=65.04 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=29.5
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
-.++.||||||||+++.+++..+... +.+++++..
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~--g~~v~~~~~ 192 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKK--GVSSTLLHF 192 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEEEH
Confidence 47899999999999999999999865 667766654
No 222
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.50 E-value=0.071 Score=64.41 Aligned_cols=55 Identities=24% Similarity=0.255 Sum_probs=40.8
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec-CH--HHHHHHHHHHHhcCCC
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH-SN--QALNDLFEKIMQRDVP 890 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~-SN--~AlD~L~ekL~~l~i~ 890 (1456)
+.+.+|.||.|+||||+++.++..+... +.+|.+++- +- .|++++.......+++
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvp 263 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVE 263 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCC
Confidence 5688999999999999999999887665 567766553 33 4577776665555543
No 223
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.50 E-value=0.06 Score=66.21 Aligned_cols=60 Identities=23% Similarity=0.355 Sum_probs=49.7
Q ss_pred HHHHHHHhc---cCC--CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 823 TQVGAIISG---IQP--GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 823 sQ~eAI~sa---l~~--gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.|-+||... +.. ..-.+.|.-|||||+|++.+|+.+ +..+||+||+...+-||...+.+.
T Consensus 16 DQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~~-----~rPtLV~AhNKTLAaQLy~Efk~f 80 (663)
T COG0556 16 DQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKV-----QRPTLVLAHNKTLAAQLYSEFKEF 80 (663)
T ss_pred CcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHHHh-----CCCeEEEecchhHHHHHHHHHHHh
Confidence 466676544 433 356889999999999999998766 789999999999999999999886
No 224
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.48 E-value=0.049 Score=63.83 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=21.9
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHc
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHN 861 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~ 861 (1456)
..++.||||||||++|..++..+...
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~ 85 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRL 85 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 47889999999999998887777654
No 225
>PHA02653 RNA helicase NPH-II; Provisional
Probab=94.46 E-value=0.076 Score=69.04 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=51.3
Q ss_pred CCCCCH----HHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHH------HH-------cCCCCcEEEEecCHHHHHH
Q 000509 817 SVRFTP----TQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVL------YH-------NCPSQRTLIITHSNQALND 879 (1456)
Q Consensus 817 ~v~Ln~----sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L------~~-------~~p~~rILIvA~SN~AlD~ 879 (1456)
+++|++ .|.+++...+.+...+++|+.|||||+.+-+.+... +. .....+++|++|+..++.+
T Consensus 158 ~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~q 237 (675)
T PHA02653 158 KIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRL 237 (675)
T ss_pred cccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHH
Confidence 445554 455666677778889999999999998877665431 11 2234689999999999999
Q ss_pred HHHHHHh
Q 000509 880 LFEKIMQ 886 (1456)
Q Consensus 880 L~ekL~~ 886 (1456)
+.+.+.+
T Consensus 238 i~~~i~~ 244 (675)
T PHA02653 238 HSITLLK 244 (675)
T ss_pred HHHHHHH
Confidence 8888765
No 226
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.37 E-value=0.069 Score=61.31 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHhc---c--CCCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 818 VRFTPTQVGAIISG---I--QPGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 818 v~Ln~sQ~eAI~sa---l--~~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
+-.++.+.+|+... + .+++.+|+||||+|||+++..+...+
T Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 22 FYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 34466666666533 3 25688999999999999988776554
No 227
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.35 E-value=0.055 Score=66.90 Aligned_cols=49 Identities=29% Similarity=0.459 Sum_probs=41.8
Q ss_pred CCCCCCCCCCHHHHHHHHhcc--CCCcEEEEcCCCCChHHHHHHHHHHHHH
Q 000509 812 QPRQNSVRFTPTQVGAIISGI--QPGLTMVVGPPGTGKTDTAVQILNVLYH 860 (1456)
Q Consensus 812 ~p~~n~v~Ln~sQ~eAI~sal--~~gltLI~GPPGTGKT~tia~iI~~L~~ 860 (1456)
....+...+++.|...+...+ +.|+.+|.||-|+|||||+-.++..+-.
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 345567788999999998887 5799999999999999999998877754
No 228
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.023 Score=69.06 Aligned_cols=22 Identities=41% Similarity=0.745 Sum_probs=20.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L 858 (1456)
-|.-||||||||+.|+++++.|
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhc
Confidence 6899999999999999988776
No 229
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=94.34 E-value=0.32 Score=65.55 Aligned_cols=59 Identities=19% Similarity=0.153 Sum_probs=47.8
Q ss_pred CCCCCHHHHHHHHhccC--CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHH
Q 000509 817 SVRFTPTQVGAIISGIQ--PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQ 875 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~--~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~ 875 (1456)
.+.+-|.|..++...+. .+-.+|-=..|.|||-.+..++..++......|+||+||+.-
T Consensus 150 ~~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~sL 210 (956)
T PRK04914 150 RASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPETL 210 (956)
T ss_pred CCCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHHH
Confidence 46688999999877653 334677889999999999988888887766789999999743
No 230
>PRK06921 hypothetical protein; Provisional
Probab=94.32 E-value=0.082 Score=61.43 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=30.6
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
.+-.+++||||||||+++.+++..+.... +.+++.++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH
Confidence 45689999999999999999999887642 466776664
No 231
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.19 E-value=0.04 Score=55.36 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+|.|+|||||||++..+...+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999888776
No 232
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.15 E-value=0.047 Score=64.10 Aligned_cols=25 Identities=40% Similarity=0.563 Sum_probs=20.6
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
++..++.||||||||+++..++..+
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3458999999999999998776554
No 233
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.14 E-value=0.066 Score=64.62 Aligned_cols=51 Identities=25% Similarity=0.377 Sum_probs=41.4
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCC--cEEEEecCHHHHHHHHHHHHh
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQ--RTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~--rILIvA~SN~AlD~L~ekL~~ 886 (1456)
-.+|.||||||||+++..++..+..+.++- .+++|.....-+.++.+.+..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~ 187 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKG 187 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhh
Confidence 469999999999999999999998876554 366777777778888887754
No 234
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.08 E-value=0.11 Score=64.88 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=32.1
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
+..+|.||||||||+++.++...+....++.+++.++.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~ 179 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG 179 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 45789999999999999888888877777888887765
No 235
>PTZ00301 uridine kinase; Provisional
Probab=94.05 E-value=0.064 Score=60.17 Aligned_cols=37 Identities=22% Similarity=0.412 Sum_probs=27.3
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEe
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT 871 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA 871 (1456)
-+..|.||||+||||++..++..|........+.+++
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~ 40 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVIC 40 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeC
Confidence 4567999999999999999988886654333444443
No 236
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.05 E-value=0.084 Score=48.52 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L 858 (1456)
..|.|+||+|||+++..+...+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999888877
No 237
>PRK09354 recA recombinase A; Provisional
Probab=94.05 E-value=0.086 Score=63.29 Aligned_cols=49 Identities=18% Similarity=0.371 Sum_probs=37.3
Q ss_pred HHHHHHh--ccCCC-cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCH
Q 000509 824 QVGAIIS--GIQPG-LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSN 874 (1456)
Q Consensus 824 Q~eAI~s--al~~g-ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN 874 (1456)
..+.+.. ++..| ++.|.||||||||+++.+++.+.... +.+++.+..-+
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~ 98 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEH 98 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCcc
Confidence 3444433 56544 99999999999999999999888776 77877777544
No 238
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.04 E-value=0.11 Score=63.83 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=36.5
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec-C--HHHHHHHHHHHHhcCC
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH-S--NQALNDLFEKIMQRDV 889 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~-S--N~AlD~L~ekL~~l~i 889 (1456)
+.+.+|.||+|+||||+++.++..+... .+.+|++++- + ..|..++.......++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~-~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgv 280 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLH-MGKSVSLYTTDNYRIAAIEQLKRYADTMGM 280 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEecccchhhhHHHHHHHHHHhcCC
Confidence 4578899999999999999999866322 2677776663 2 2344544444343444
No 239
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.98 E-value=0.16 Score=64.37 Aligned_cols=58 Identities=24% Similarity=0.283 Sum_probs=45.1
Q ss_pred ccC-CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCC
Q 000509 831 GIQ-PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 831 al~-~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~ 890 (1456)
++. ..+++|.|+||||||+++.+++.+-+.+ .++++|+++... ..+++.+.+..++++
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~-~ge~~lyis~ee-~~~~i~~~~~~~g~d 85 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKR-FDEPGVFVTFEE-SPEDIIRNVASFGWD 85 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCEEEEEccC-CHHHHHHHHHHcCCC
Confidence 454 4588999999999999999998777655 278898888655 556777777777654
No 240
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=93.97 E-value=0.14 Score=61.98 Aligned_cols=59 Identities=25% Similarity=0.293 Sum_probs=46.0
Q ss_pred HHHHHHhccCC--CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 824 QVGAIISGIQP--GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 824 Q~eAI~sal~~--gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
|.+|+.+.... +..+|.+|+|+|||.++...+ + . ...++++++|++..+++..+++.+.
T Consensus 2 Q~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~--l-~--~~~~~~~~~P~~aL~~~~~~~~~~~ 62 (357)
T TIGR03158 2 QVATFEALQSKDADIIFNTAPTGAGKTLAWLTPL--L-H--GENDTIALYPTNALIEDQTEAIKEF 62 (357)
T ss_pred HHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHH--H-H--cCCCEEEEeChHHHHHHHHHHHHHH
Confidence 78888877743 468999999999998764333 2 2 2568999999999999998888764
No 241
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=93.93 E-value=0.051 Score=64.18 Aligned_cols=55 Identities=24% Similarity=0.174 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 818 VRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 818 v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
...|+.|...+.++....+++-.||.|||||.+++..+...+....-.||+++=|
T Consensus 127 ~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRP 181 (348)
T COG1702 127 IPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRP 181 (348)
T ss_pred EecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCc
Confidence 3468899999999999999999999999999999999988888866688988877
No 242
>PRK13768 GTPase; Provisional
Probab=93.93 E-value=0.063 Score=61.84 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=29.8
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEe
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT 871 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA 871 (1456)
+.+|.||+|+||||++..++..+..+ +.+++++.
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~--g~~v~~i~ 37 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQ--GYDVAIVN 37 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhc--CCceEEEE
Confidence 57899999999999999999888765 78888875
No 243
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.91 E-value=0.066 Score=59.93 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=32.8
Q ss_pred ccC-CCcEEEEcCCCCChHHHHHHHHHHHHHcC----CCCcEEEEecCH
Q 000509 831 GIQ-PGLTMVVGPPGTGKTDTAVQILNVLYHNC----PSQRTLIITHSN 874 (1456)
Q Consensus 831 al~-~gltLI~GPPGTGKT~tia~iI~~L~~~~----p~~rILIvA~SN 874 (1456)
++. ..++.|.||||||||+++.+++....... .+.+++.++..+
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 454 35999999999999999999998876542 126677766544
No 244
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.90 E-value=0.044 Score=59.32 Aligned_cols=23 Identities=30% Similarity=0.676 Sum_probs=19.2
Q ss_pred cEEEEcCCCCChHHHHHHHHHHH
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L 858 (1456)
+.+|.|||||||||++..++..+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 46899999999999988877544
No 245
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=93.88 E-value=0.065 Score=63.17 Aligned_cols=46 Identities=33% Similarity=0.398 Sum_probs=30.2
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHH
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEK 883 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ek 883 (1456)
-.+.|||||||||+++--|+..- + .+..+.+=++.||.-++++-.-
T Consensus 164 SmIlWGppG~GKTtlArlia~ts-k-~~SyrfvelSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTS-K-KHSYRFVELSATNAKTNDVRDI 209 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhc-C-CCceEEEEEeccccchHHHHHH
Confidence 46789999999998776554322 1 1235677777777777665433
No 246
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=93.79 E-value=0.07 Score=58.08 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=27.5
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
++++|.|..|+||||++.+++. ....+.|+.|+..
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~---~~~~~~~~~vI~n 35 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK---RNRQGERVAVIVN 35 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH---HHTTTS-EEEEEC
T ss_pred CEEEEEcCCCCCHHHHHHHHHH---HhcCCceeEEEEc
Confidence 5789999999999999998887 3345788888863
No 247
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.78 E-value=0.075 Score=55.86 Aligned_cols=39 Identities=31% Similarity=0.529 Sum_probs=30.2
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQ 875 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~ 875 (1456)
++.+|.||.||||||++..++..|..+ +.++.++-|++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~--g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR--GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc--CCceEEEEEccC
Confidence 357899999999999999999999877 777777666553
No 248
>CHL00181 cbbX CbbX; Provisional
Probab=93.78 E-value=0.05 Score=63.91 Aligned_cols=25 Identities=40% Similarity=0.744 Sum_probs=21.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHc
Q 000509 837 TMVVGPPGTGKTDTAVQILNVLYHN 861 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L~~~ 861 (1456)
.++.||||||||++|..++..++..
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~ 86 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKL 86 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 6789999999999999888776643
No 249
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.71 E-value=0.12 Score=64.82 Aligned_cols=49 Identities=22% Similarity=0.383 Sum_probs=35.8
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec---CHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH---SNQALNDLFE 882 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~---SN~AlD~L~e 882 (1456)
.++.+|.||+|+||||++..++..+.....+.+|.+++. ...|.+++..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ 401 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHS 401 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHH
Confidence 468889999999999999999988776644567777652 2334555443
No 250
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.69 E-value=0.07 Score=61.71 Aligned_cols=49 Identities=22% Similarity=0.366 Sum_probs=34.9
Q ss_pred HHHHHHHHhcc-CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 822 PTQVGAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 822 ~sQ~eAI~sal-~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
+...+.+..++ ..+..+|.||+||||||++..++..+-.. ..+|+++--
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~--~~~iv~iEd 163 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE--DERIVTIED 163 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT--TSEEEEEES
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc--ccceEEecc
Confidence 44555565554 57899999999999999998887655432 366666553
No 251
>PRK04195 replication factor C large subunit; Provisional
Probab=93.68 E-value=0.1 Score=65.65 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHhccC-------CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecC
Q 000509 817 SVRFTPTQVGAIISGIQ-------PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHS 873 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~-------~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~S 873 (1456)
.+-.++.+.+.+...+. +...+|.||||||||+++..++..+ +..++.+..|
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~~ielnas 73 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWEVIELNAS 73 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCEEEEccc
Confidence 35566777666655431 5689999999999999998777655 3345555443
No 252
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.67 E-value=0.048 Score=58.17 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L 858 (1456)
..|.|||||||||++..++..+
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHh
Confidence 4689999999999998877665
No 253
>PRK08233 hypothetical protein; Provisional
Probab=93.65 E-value=0.049 Score=58.61 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=20.6
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
..+..|.|||||||||++..++..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 3567889999999999998877654
No 254
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.64 E-value=0.084 Score=65.95 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=30.3
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEe
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT 871 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA 871 (1456)
.++.++.||.|+|||||++.++..+.......+|.+++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~ 293 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLT 293 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 46899999999999999999998876543345676665
No 255
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.59 E-value=0.12 Score=60.70 Aligned_cols=41 Identities=32% Similarity=0.472 Sum_probs=30.5
Q ss_pred CHHHHHHHHhccC---CCcEEEEcCCCCChHHHHHHHHHHHHHc
Q 000509 821 TPTQVGAIISGIQ---PGLTMVVGPPGTGKTDTAVQILNVLYHN 861 (1456)
Q Consensus 821 n~sQ~eAI~sal~---~gltLI~GPPGTGKT~tia~iI~~L~~~ 861 (1456)
...+.+.+...+. .+..+|.||||||||+++..++..+...
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~ 65 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGE 65 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4556666666553 2347999999999999999888887643
No 256
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.54 E-value=0.16 Score=62.76 Aligned_cols=42 Identities=29% Similarity=0.383 Sum_probs=28.0
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDL 880 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L 880 (1456)
.+..+++||||||||+++..+...+ +.+...+..+...++.+
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~-----~~~~~~l~a~~~~~~~i 77 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGAT-----DAPFEALSAVTSGVKDL 77 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEecccccHHHH
Confidence 3457889999999999988776543 34455555554444443
No 257
>PRK08118 topology modulation protein; Reviewed
Probab=93.50 E-value=0.058 Score=58.23 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+|.||||+||||++..+...+
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999888877664
No 258
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.49 E-value=0.11 Score=48.89 Aligned_cols=33 Identities=33% Similarity=0.517 Sum_probs=29.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEe
Q 000509 837 TMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT 871 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA 871 (1456)
.+|.|.+|+|||+++..++..+... +.+++++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~--g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR--GKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEC
Confidence 5788999999999999999888764 78888888
No 259
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.49 E-value=0.069 Score=66.83 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLY 859 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~ 859 (1456)
...+++||||||||++|-.++..+.
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3468999999999999988877764
No 260
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.48 E-value=0.06 Score=58.22 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
++.+|.|||||||||++..++..+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999998887654
No 261
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.48 E-value=0.068 Score=53.31 Aligned_cols=24 Identities=33% Similarity=0.646 Sum_probs=21.8
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHc
Q 000509 838 MVVGPPGTGKTDTAVQILNVLYHN 861 (1456)
Q Consensus 838 LI~GPPGTGKT~tia~iI~~L~~~ 861 (1456)
.|.||||+|||+++..++..+...
T Consensus 2 ~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 2 WIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH
Confidence 689999999999999999888865
No 262
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=93.44 E-value=0.093 Score=64.22 Aligned_cols=28 Identities=36% Similarity=0.668 Sum_probs=23.0
Q ss_pred CCcE-EEEcCCCCChHHHHHHHHHHHHHc
Q 000509 834 PGLT-MVVGPPGTGKTDTAVQILNVLYHN 861 (1456)
Q Consensus 834 ~glt-LI~GPPGTGKT~tia~iI~~L~~~ 861 (1456)
|++. .|+|||||||||+|-.++..+-+.
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ 96 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQ 96 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHh
Confidence 4444 499999999999999999887654
No 263
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.42 E-value=0.082 Score=62.45 Aligned_cols=26 Identities=46% Similarity=0.658 Sum_probs=22.7
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
...-.||.||||||||-+|..|...|
T Consensus 64 aGrgiLi~GppgTGKTAlA~gIa~eL 89 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMGIAREL 89 (450)
T ss_pred cccEEEEECCCCCcHHHHHHHHHHHh
Confidence 34568999999999999999998877
No 264
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.41 E-value=0.074 Score=59.92 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=31.1
Q ss_pred ccC-CCcEEEEcCCCCChHHHHHHHHHHHHHcCC----CCcEEEEecCH
Q 000509 831 GIQ-PGLTMVVGPPGTGKTDTAVQILNVLYHNCP----SQRTLIITHSN 874 (1456)
Q Consensus 831 al~-~gltLI~GPPGTGKT~tia~iI~~L~~~~p----~~rILIvA~SN 874 (1456)
++. ..++.|.||||||||+++.+++.+.....+ +.+++.++..+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 443 468899999999999999999876543321 35666666443
No 265
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=93.37 E-value=0.062 Score=64.10 Aligned_cols=25 Identities=40% Similarity=0.578 Sum_probs=21.1
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
++..+|.||||||||+++..++..+
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHh
Confidence 4578999999999999999777655
No 266
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.36 E-value=0.59 Score=59.01 Aligned_cols=51 Identities=20% Similarity=0.293 Sum_probs=37.6
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHHcC---CCCcEEEEecCHHHHHHHHHHHHh
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVLYHNC---PSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L~~~~---p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
.+.+.+|.|-+|+||||-|-|- |+... .+++|-++-|-..|+--+..|+.+
T Consensus 279 e~QVLiI~GeTGSGKTTQiPQy---L~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~ 332 (902)
T KOG0923|consen 279 EHQVLIIVGETGSGKTTQIPQY---LYEAGYTKGGKKIGCTQPRRVAAMSVAARVAE 332 (902)
T ss_pred hCcEEEEEcCCCCCccccccHH---HHhcccccCCceEeecCcchHHHHHHHHHHHH
Confidence 5678999999999999866654 44332 245577777888888888777764
No 267
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.35 E-value=0.096 Score=58.70 Aligned_cols=39 Identities=28% Similarity=0.488 Sum_probs=32.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHH---cCCCCcEEEEecCHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNVLYH---NCPSQRTLIITHSNQ 875 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L~~---~~p~~rILIvA~SN~ 875 (1456)
|+|.||||+||||.+-.++..+.. +++..||.|+--+|.
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersE 181 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSE 181 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccch
Confidence 799999999999999988887753 456788888876654
No 268
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.21 Score=60.75 Aligned_cols=69 Identities=20% Similarity=0.321 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHHhcc-------CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCC-cEEEEecCHHHHHHHHHHHHh
Q 000509 818 VRFTPTQVGAIISGI-------QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQ-RTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 818 v~Ln~sQ~eAI~sal-------~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~-rILIvA~SN~AlD~L~ekL~~ 886 (1456)
++.=++|.+.+...+ .|.-.+|.||||||||.++-.++..+-...++. -+=|=|..+....+++.+|..
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 445567888877554 233378999999999999999999988765555 577778877777788887765
No 269
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.27 E-value=0.13 Score=60.66 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHhcc----CCCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 817 SVRFTPTQVGAIISGI----QPGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal----~~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+-.++...+.+...+ .+++.++.||||||||+++..++..+
T Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 22 ECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3445566656665444 34577779999999999988776654
No 270
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.26 E-value=0.089 Score=64.40 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=19.4
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
.-.++.||||||||+++..++..+
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHHh
Confidence 347899999999999988776543
No 271
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.24 E-value=0.099 Score=59.47 Aligned_cols=50 Identities=14% Similarity=0.335 Sum_probs=35.0
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHc----------CCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHN----------CPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~----------~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
+++|.||||||||+++.+++..+..- ..+.+||+++-=+.+ +++.+|+..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~-~~i~~Rl~~ 62 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPR-EEIHRRLEA 62 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCH-HHHHHHHHH
Confidence 68999999999999999998876521 134678888754332 345555544
No 272
>PRK13531 regulatory ATPase RavA; Provisional
Probab=93.23 E-value=0.082 Score=65.74 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=24.6
Q ss_pred hccCCCcEEEEcCCCCChHHHHHHHHHHHH
Q 000509 830 SGIQPGLTMVVGPPGTGKTDTAVQILNVLY 859 (1456)
Q Consensus 830 sal~~gltLI~GPPGTGKT~tia~iI~~L~ 859 (1456)
.++..+-.+|.||||||||+++..+...+-
T Consensus 35 aalag~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 35 AALSGESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred HHccCCCEEEECCCChhHHHHHHHHHHHhc
Confidence 445788999999999999999887776543
No 273
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.21 E-value=0.085 Score=66.36 Aligned_cols=25 Identities=40% Similarity=0.542 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLY 859 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~ 859 (1456)
.-.++.||||||||+++..++..+.
T Consensus 217 ~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred cceEEECCCCCcHHHHHHHHHHhhc
Confidence 3478999999999999888877764
No 274
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=93.13 E-value=0.078 Score=64.20 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L 858 (1456)
.++.||||||||+++..++..+
T Consensus 159 vLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 159 VLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999988776554
No 275
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.08 E-value=0.15 Score=61.51 Aligned_cols=39 Identities=28% Similarity=0.595 Sum_probs=28.8
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
..|+.+|.||+|+||||++..++..+... .+.+|+.+-.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~-~~~~i~tiEd 159 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKN-AAGHIITIED 159 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcC-CCCEEEEEcC
Confidence 46899999999999999999887765422 2355555443
No 276
>PRK06762 hypothetical protein; Provisional
Probab=93.07 E-value=0.077 Score=56.61 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
+.+.+|.|+|||||||++..+...+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999998777665
No 277
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.06 E-value=0.12 Score=56.04 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=34.4
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
+++|.||||||||+.+.+++.. . +.+++.++-....-.++.+++..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~--~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---L--GGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---c--CCCeEEEEccCcCCHHHHHHHHH
Confidence 4799999999999999988754 2 56888887665554556666554
No 278
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=93.04 E-value=0.093 Score=63.10 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.5
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
..+.++.||||||||+++..++..+
T Consensus 78 r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5688999999999999888777665
No 279
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.03 E-value=0.071 Score=55.84 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=18.8
Q ss_pred cEEEEcCCCCChHHHHHHHHHH
Q 000509 836 LTMVVGPPGTGKTDTAVQILNV 857 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~ 857 (1456)
+.+|.||||+||||++..+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4689999999999999887655
No 280
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.98 E-value=0.12 Score=60.91 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=30.4
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEe
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT 871 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA 871 (1456)
..+..|.||||+|||+++..++..+... +.++.+++
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~--~~~v~~i~ 69 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRR--GLKVAVIA 69 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEe
Confidence 4577889999999999999999887765 77888776
No 281
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=92.95 E-value=0.21 Score=61.65 Aligned_cols=61 Identities=20% Similarity=0.347 Sum_probs=45.5
Q ss_pred HHHHHHhccCCC-cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 824 QVGAIISGIQPG-LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 824 Q~eAI~sal~~g-ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
-.+.+..|+.+| +++|-|+||+|||+++.+++.++... .+.+|++++.=. ..+++..|+..
T Consensus 183 ~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~-~g~~v~~fSlEm-~~~~l~~Rl~~ 244 (421)
T TIGR03600 183 KLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALR-EGKPVLFFSLEM-SAEQLGERLLA 244 (421)
T ss_pred hHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC-CHHHHHHHHHH
Confidence 344455588766 99999999999999999999887632 277899988543 55666777654
No 282
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.93 E-value=0.18 Score=62.87 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=30.2
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
+..+|.||||||||+++..+...+... +.+++.++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH
Confidence 457899999999999999999888765 678877764
No 283
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.91 E-value=0.11 Score=59.49 Aligned_cols=34 Identities=29% Similarity=0.530 Sum_probs=28.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 837 TMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
.+|.||+|||||+++..++..+-+.+ ..|.++|+
T Consensus 16 ~viIG~sGSGKT~li~~lL~~~~~~f--~~I~l~t~ 49 (241)
T PF04665_consen 16 MVIIGKSGSGKTTLIKSLLYYLRHKF--DHIFLITP 49 (241)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcccC--CEEEEEec
Confidence 56999999999999999998877665 67777776
No 284
>PF12846 AAA_10: AAA-like domain
Probab=92.91 E-value=0.13 Score=59.50 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=35.1
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALN 878 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD 878 (1456)
+.++|.|++|+|||+++..++..++.. +.+++++=+...-.+
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~--g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRR--GPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHc--CCCEEEEcCCchHHH
Confidence 568999999999999999999998877 788888876644443
No 285
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.89 E-value=0.092 Score=55.83 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=20.9
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
+...+|.||||||||+++..+...+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3467889999999999998887665
No 286
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.89 E-value=0.077 Score=68.64 Aligned_cols=34 Identities=44% Similarity=0.646 Sum_probs=26.1
Q ss_pred CHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHH
Q 000509 821 TPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQIL 855 (1456)
Q Consensus 821 n~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI 855 (1456)
||.|-+..-.-...| .|+.||||||||-+|-+++
T Consensus 332 NP~~Y~~lGAKiPkG-vLL~GPPGTGKTLLAKAiA 365 (774)
T KOG0731|consen 332 NPEQYQELGAKIPKG-VLLVGPPGTGKTLLAKAIA 365 (774)
T ss_pred CHHHHHHcCCcCcCc-eEEECCCCCcHHHHHHHHh
Confidence 566766665555666 7999999999998877666
No 287
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=92.89 E-value=0.12 Score=61.38 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=37.6
Q ss_pred hccC-CCcEEEEcCCCCChHHHHHHHHHHHHHcC----CCCcEEEEecCHH-HHHHHHHHHHhcC
Q 000509 830 SGIQ-PGLTMVVGPPGTGKTDTAVQILNVLYHNC----PSQRTLIITHSNQ-ALNDLFEKIMQRD 888 (1456)
Q Consensus 830 sal~-~gltLI~GPPGTGKT~tia~iI~~L~~~~----p~~rILIvA~SN~-AlD~L~ekL~~l~ 888 (1456)
-++. ..++.|.||||||||+++.+++.+..... .+.+++.++.-+. -.+.+.+.....+
T Consensus 97 GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g 161 (317)
T PRK04301 97 GGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALG 161 (317)
T ss_pred CCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcC
Confidence 3453 56889999999999999999987765321 1346777765432 2344444333333
No 288
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.86 E-value=0.12 Score=53.47 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=22.3
Q ss_pred EEcCCCCChHHHHHHHHHHHHHcC
Q 000509 839 VVGPPGTGKTDTAVQILNVLYHNC 862 (1456)
Q Consensus 839 I~GPPGTGKT~tia~iI~~L~~~~ 862 (1456)
..||||||||.|+-.|+.+|+...
T Consensus 58 fHG~tGtGKn~v~~liA~~ly~~G 81 (127)
T PF06309_consen 58 FHGWTGTGKNFVSRLIAEHLYKSG 81 (127)
T ss_pred eecCCCCcHHHHHHHHHHHHHhcc
Confidence 689999999999999999999874
No 289
>PRK05541 adenylylsulfate kinase; Provisional
Probab=92.79 E-value=0.15 Score=54.96 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEE
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLII 870 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIv 870 (1456)
+.+.++.|||||||||++..+...+... +..+.++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 4477899999999999998888887654 3344444
No 290
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=92.77 E-value=1.2 Score=60.59 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=44.8
Q ss_pred CCCCCCCCCHHHHHHHHhcc---CCCc-EEEEcCCCCChHHHHHHHHHHHHHc-CCCCcEEEEecCHH
Q 000509 813 PRQNSVRFTPTQVGAIISGI---QPGL-TMVVGPPGTGKTDTAVQILNVLYHN-CPSQRTLIITHSNQ 875 (1456)
Q Consensus 813 p~~n~v~Ln~sQ~eAI~sal---~~gl-tLI~GPPGTGKT~tia~iI~~L~~~-~p~~rILIvA~SN~ 875 (1456)
|..-.-.|=+.|.+++.-.+ .+|. .++.=..|.|||..+..++..+... ....++|||||...
T Consensus 163 P~~i~~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~Sl 230 (1033)
T PLN03142 163 PSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKST 230 (1033)
T ss_pred ChHhccchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHH
Confidence 43333578899999997554 2333 4555579999999998888887653 23468999999654
No 291
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.77 E-value=0.16 Score=54.34 Aligned_cols=37 Identities=27% Similarity=0.466 Sum_probs=30.9
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCH
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSN 874 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN 874 (1456)
+..|.||+|||||+++..++..|-.. +.++.++-|..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~--G~~V~viK~~~ 37 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR--GYRVATIKHDH 37 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEeccc
Confidence 35789999999999999999988655 67888887763
No 292
>PRK14530 adenylate kinase; Provisional
Probab=92.73 E-value=0.099 Score=58.53 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=19.8
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
...+|.|||||||||++..++..+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999988776554
No 293
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.72 E-value=0.19 Score=64.19 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=33.3
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecC
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHS 873 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~S 873 (1456)
+..+|.||+|||||+++.++...+....++.+++.++..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitae 353 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSE 353 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 357999999999999999999998877778888877753
No 294
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.67 E-value=0.12 Score=65.19 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=21.3
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHH
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYH 860 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~ 860 (1456)
..++.||||||||+++-.++..+.-
T Consensus 38 a~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4499999999999999888877763
No 295
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=92.64 E-value=0.12 Score=63.96 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=19.3
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
.-.++.||||||||+++-.++..+
T Consensus 218 ~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 218 KGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 346889999999999888776544
No 296
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.61 E-value=0.15 Score=55.67 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=32.6
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHH
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQ 875 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~ 875 (1456)
...++.|.||+||||||++..++..|-.. +.+|-++-|+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~--g~~vg~Ik~~~~ 45 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR--GIRPGLIKHTHH 45 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc--CCeEEEEEEcCC
Confidence 45688999999999999999999888654 567777766543
No 297
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.57 E-value=0.17 Score=56.53 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=22.5
Q ss_pred CHHHHHHHH-hccCCCcEEEEcCCCCChHHHHHHHH
Q 000509 821 TPTQVGAII-SGIQPGLTMVVGPPGTGKTDTAVQIL 855 (1456)
Q Consensus 821 n~sQ~eAI~-sal~~gltLI~GPPGTGKT~tia~iI 855 (1456)
-+.-++|+. ++....-.++.||||||||+++-.+.
T Consensus 8 Qe~aKrAL~iAAaG~h~lLl~GppGtGKTmlA~~l~ 43 (206)
T PF01078_consen 8 QEEAKRALEIAAAGGHHLLLIGPPGTGKTMLARRLP 43 (206)
T ss_dssp THHHHHHHHHHHHCC--EEEES-CCCTHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCCCeEEECCCCCCHHHHHHHHH
Confidence 445566664 33456678999999999998776554
No 298
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=92.49 E-value=0.14 Score=66.95 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHhccC-------C-CcEEEEcCCCCChHHHHHHHHHHHHH
Q 000509 817 SVRFTPTQVGAIISGIQ-------P-GLTMVVGPPGTGKTDTAVQILNVLYH 860 (1456)
Q Consensus 817 ~v~Ln~sQ~eAI~sal~-------~-gltLI~GPPGTGKT~tia~iI~~L~~ 860 (1456)
.++-=+.|.+.|...+. + ++.+|.||||||||.|+..++..|-.
T Consensus 756 ~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34555778877765542 2 24469999999999999998877753
No 299
>PRK03839 putative kinase; Provisional
Probab=92.46 E-value=0.1 Score=56.56 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+|.||||+||||++..++..+
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6889999999999988777655
No 300
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.45 E-value=0.11 Score=53.75 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=19.7
Q ss_pred cEEEEcCCCCChHHHHHHHHHHH
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L 858 (1456)
+.+|.||||||||+++..+...+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 35899999999999999888665
No 301
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=92.43 E-value=0.096 Score=59.89 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=18.3
Q ss_pred EEcCCCCChHHHHHHHHHHHHHc
Q 000509 839 VVGPPGTGKTDTAVQILNVLYHN 861 (1456)
Q Consensus 839 I~GPPGTGKT~tia~iI~~L~~~ 861 (1456)
|.||||+||||....+..++-.+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~ 23 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN 23 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999988888776443
No 302
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.41 E-value=0.16 Score=58.26 Aligned_cols=33 Identities=24% Similarity=0.493 Sum_probs=25.4
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEE
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLII 870 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIv 870 (1456)
+.++.|+|||||||++..+...+-.. +.++.++
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~--~~~v~~i 33 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK--NIDVIIL 33 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc--CCceEEE
Confidence 46899999999999999998877543 4445444
No 303
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.40 E-value=0.12 Score=61.60 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=28.5
Q ss_pred CHHHHHHHHhc-cCCCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 821 TPTQVGAIISG-IQPGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 821 n~sQ~eAI~sa-l~~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+....++..+ +..+..++.||||||||+++-+++..+
T Consensus 29 ~~~~~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l 67 (329)
T COG0714 29 DEEVIELALLALLAGGHVLLEGPPGVGKTLLARALARAL 67 (329)
T ss_pred cHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHh
Confidence 34445554434 478899999999999999988887666
No 304
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=92.40 E-value=0.1 Score=60.37 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=27.6
Q ss_pred HHHHHHHhcc-----CCCcEEEEcCCCCChHHHHHHHHHHHH
Q 000509 823 TQVGAIISGI-----QPGLTMVVGPPGTGKTDTAVQILNVLY 859 (1456)
Q Consensus 823 sQ~eAI~sal-----~~gltLI~GPPGTGKT~tia~iI~~L~ 859 (1456)
+..+.|...+ ..++..|+|++|+|||++|.+++....
T Consensus 3 ~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~ 44 (287)
T PF00931_consen 3 KEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLR 44 (287)
T ss_dssp HHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccc
Confidence 3445554444 356889999999999999999887743
No 305
>PRK14527 adenylate kinase; Provisional
Probab=92.38 E-value=0.11 Score=56.93 Aligned_cols=26 Identities=31% Similarity=0.639 Sum_probs=21.3
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+.+.+|.||||+||||++..++..+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999988776544
No 306
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=92.38 E-value=0.18 Score=53.45 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=28.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 837 TMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
..+.|++|+|||+++..++..+... +.|++++..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~--g~~v~ii~~ 35 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRAR--GKRVAVLAI 35 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEe
Confidence 5688999999999999998888766 778888764
No 307
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.37 E-value=0.17 Score=57.11 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=25.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecC
Q 000509 837 TMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHS 873 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~S 873 (1456)
.-|.||+|+||||++..++..+-....+.++.+++.-
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D 38 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTD 38 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecC
Confidence 4688999999999988776655331124566666543
No 308
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.33 E-value=0.18 Score=62.59 Aligned_cols=58 Identities=22% Similarity=0.355 Sum_probs=43.4
Q ss_pred HHHhccCCC-cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 827 AIISGIQPG-LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 827 AI~sal~~g-ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
.+..|+.+| +++|-|+||+|||+++.+++.++... .+.+|++++.-... .++..|+..
T Consensus 187 ~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~-~g~~vl~~SlEm~~-~~i~~R~~~ 245 (434)
T TIGR00665 187 KLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIK-EGKPVAFFSLEMSA-EQLAMRMLS 245 (434)
T ss_pred hhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHh-CCCeEEEEeCcCCH-HHHHHHHHH
Confidence 344577766 99999999999999999999887653 26789888875533 445566654
No 309
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.33 E-value=0.24 Score=64.77 Aligned_cols=57 Identities=28% Similarity=0.317 Sum_probs=40.0
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec-CHH--HHHHHHHHHHhcCCC
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH-SNQ--ALNDLFEKIMQRDVP 890 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~-SN~--AlD~L~ekL~~l~i~ 890 (1456)
+++.++.||.|+|||||++.++..+.....+++|.+++. +-. |++++..--...+++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvp 244 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVP 244 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCC
Confidence 468999999999999999999987754433457766654 333 667775544444544
No 310
>PRK07261 topology modulation protein; Provisional
Probab=92.32 E-value=0.11 Score=56.40 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.2
Q ss_pred EEEEcCCCCChHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNV 857 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~ 857 (1456)
.+|.||||+||||++..+...
T Consensus 3 i~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999999887654
No 311
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.31 E-value=0.15 Score=46.26 Aligned_cols=26 Identities=42% Similarity=0.741 Sum_probs=22.6
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHc
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHN 861 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~ 861 (1456)
+++|.||.|+|||+++-++...|+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 89999999999999998887777643
No 312
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.29 E-value=0.13 Score=62.40 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLY 859 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~ 859 (1456)
...++.||||||||+++-.++..+.
T Consensus 39 h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHhc
Confidence 3458999999999999988877664
No 313
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.28 E-value=0.19 Score=54.95 Aligned_cols=34 Identities=32% Similarity=0.506 Sum_probs=25.2
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEe
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT 871 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA 871 (1456)
+..|.|+|||||||++..++..+-.. +.++.+++
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~--~~~~~~i~ 34 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN--GIGPVVIS 34 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEEe
Confidence 35799999999999998888777543 34555543
No 314
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.27 E-value=0.17 Score=55.72 Aligned_cols=33 Identities=30% Similarity=0.550 Sum_probs=24.3
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
+..|.||+|+||||++..+...+ ++.++.+++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l----~~~~~~v~~~ 33 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL----GNPKVVIISQ 33 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----CCCCeEEEEe
Confidence 36799999999999998776655 3455655554
No 315
>PRK06851 hypothetical protein; Provisional
Probab=92.27 E-value=0.15 Score=61.64 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=28.5
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEE
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLI 869 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILI 869 (1456)
....+|.||||||||+++..++..+..+ +.+|.+
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~--G~~v~~ 247 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEER--GFDVEV 247 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhC--CCeEEE
Confidence 4678999999999999999999999877 555443
No 316
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=92.26 E-value=1.4 Score=54.51 Aligned_cols=72 Identities=22% Similarity=0.227 Sum_probs=51.4
Q ss_pred CCCCCCHHHHHHHHhccCCCcEEEEcCCCCChH-HHHHHHHHHHH---------HcCCCCcEEEEecCHHHHHHHHHHHH
Q 000509 816 NSVRFTPTQVGAIISGIQPGLTMVVGPPGTGKT-DTAVQILNVLY---------HNCPSQRTLIITHSNQALNDLFEKIM 885 (1456)
Q Consensus 816 n~v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT-~tia~iI~~L~---------~~~p~~rILIvA~SN~AlD~L~ekL~ 885 (1456)
+-..-+|-|+.||--+++.+=.+-..-.||||| -.+.-++..+. ++..+..-+|++||...+.++.+.-.
T Consensus 264 ~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~ 343 (673)
T KOG0333|consen 264 GYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETN 343 (673)
T ss_pred CCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHH
Confidence 334568999999999998887888888999999 33333333322 23335678899999988888877666
Q ss_pred hc
Q 000509 886 QR 887 (1456)
Q Consensus 886 ~l 887 (1456)
++
T Consensus 344 kf 345 (673)
T KOG0333|consen 344 KF 345 (673)
T ss_pred Hh
Confidence 54
No 317
>KOG4284 consensus DEAD box protein [Transcription]
Probab=92.23 E-value=0.18 Score=63.07 Aligned_cols=70 Identities=20% Similarity=0.122 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHH-HHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcC
Q 000509 819 RFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQIL-NVLYHNCPSQRTLIITHSNQALNDLFEKIMQRD 888 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI-~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~ 888 (1456)
.-|+-|..||-.++..==.+||.-.|||||-+-+.++ ..|--+...-.++|++||..-+-++-+-+.+++
T Consensus 47 ~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~ 117 (980)
T KOG4284|consen 47 LPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVA 117 (980)
T ss_pred CCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhc
Confidence 3467899999888765557899999999997755443 334333335679999999998888877666543
No 318
>PRK06620 hypothetical protein; Validated
Probab=92.22 E-value=0.1 Score=58.65 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=17.2
Q ss_pred CcEEEEcCCCCChHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQI 854 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~i 854 (1456)
+..+|+||||||||+++..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 44799999999999998854
No 319
>PHA02244 ATPase-like protein
Probab=92.22 E-value=0.18 Score=60.91 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=22.8
Q ss_pred HHHhcc-CCCcEEEEcCCCCChHHHHHHHHHH
Q 000509 827 AIISGI-QPGLTMVVGPPGTGKTDTAVQILNV 857 (1456)
Q Consensus 827 AI~sal-~~gltLI~GPPGTGKT~tia~iI~~ 857 (1456)
.+...+ .....+|.||||||||+++.++...
T Consensus 111 ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 111 DIAKIVNANIPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHHHHHHHHH
Confidence 333333 3445789999999999999887765
No 320
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.22 E-value=0.19 Score=54.19 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=26.4
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEE
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLII 870 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIv 870 (1456)
.+.+|.|+||+||||++..++..+-.. +.++.++
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~--g~~v~~i 38 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREA--GYPVEVL 38 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEE
Confidence 467889999999999999888877543 4456555
No 321
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=92.17 E-value=0.1 Score=54.87 Aligned_cols=20 Identities=35% Similarity=0.768 Sum_probs=17.4
Q ss_pred EEcCCCCChHHHHHHHHHHH
Q 000509 839 VVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 839 I~GPPGTGKT~tia~iI~~L 858 (1456)
|.||||+|||+++..++..+
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999887664
No 322
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.15 E-value=0.19 Score=61.05 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=32.7
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
.++.+++||-|-|||||++.+++.........+|-|+|-
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITt 241 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITT 241 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEe
Confidence 789999999999999999999988874444677877764
No 323
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=92.11 E-value=0.21 Score=59.15 Aligned_cols=48 Identities=25% Similarity=0.287 Sum_probs=32.8
Q ss_pred HHHhcc-CCCcEEEEcCCCCChHHHHHHHHHHHHHc----CCCCcEEEEecCH
Q 000509 827 AIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHN----CPSQRTLIITHSN 874 (1456)
Q Consensus 827 AI~sal-~~gltLI~GPPGTGKT~tia~iI~~L~~~----~p~~rILIvA~SN 874 (1456)
++.-++ ...++.|.||||||||+++.+++.+.... ..+.+++.++.-.
T Consensus 87 ~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 87 LLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred HhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 334455 35688999999999999999998776431 1234677766433
No 324
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=92.11 E-value=0.36 Score=63.58 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHhcc-CCCcEEEEcCCCCChHHHHHHHHHHHHHcC--------CCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 819 RFTPTQVGAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNC--------PSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal-~~gltLI~GPPGTGKT~tia~iI~~L~~~~--------p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.||.-|.++.-.|. ++.=.+|..|-|+|||.++.-.|.+++++. .+-||+.+||+.+-+-++.++..+.
T Consensus 110 ~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kk 187 (1230)
T KOG0952|consen 110 EFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKK 187 (1230)
T ss_pred HHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhh
Confidence 58889999988877 566789999999999999999999998852 3579999999999999988887653
No 325
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=92.08 E-value=0.11 Score=62.48 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=20.3
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
|...+|+||||||||.++-.++..+
T Consensus 148 PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 4567899999999998888777554
No 326
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.05 E-value=0.19 Score=55.92 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=25.3
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
+-+..|.||+||||||++..+...+ ++..+.+++.
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l----~~~~~~~i~~ 40 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEEL----GDESIAVIPQ 40 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh----CCCceEEEeC
Confidence 4577899999999999988777655 2445555543
No 327
>PRK08506 replicative DNA helicase; Provisional
Probab=91.98 E-value=0.26 Score=61.93 Aligned_cols=57 Identities=14% Similarity=0.328 Sum_probs=45.7
Q ss_pred HHHhccCCC-cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 827 AIISGIQPG-LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 827 AI~sal~~g-ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
.+..|+.+| +++|-|.||.|||+++..++.++... +.+|++.+.= -..+++..|+..
T Consensus 184 ~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~--g~~V~~fSlE-Ms~~ql~~Rlla 241 (472)
T PRK08506 184 KMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALNQ--DKGVAFFSLE-MPAEQLMLRMLS 241 (472)
T ss_pred hhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHhc--CCcEEEEeCc-CCHHHHHHHHHH
Confidence 445678776 99999999999999999999998754 7889888764 456677777765
No 328
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=91.97 E-value=0.11 Score=55.34 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=17.6
Q ss_pred EEEcCCCCChHHHHHHHHHHH
Q 000509 838 MVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 838 LI~GPPGTGKT~tia~iI~~L 858 (1456)
+|.|||||||||++..+...+
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 588999999999888777554
No 329
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=91.96 E-value=0.12 Score=56.27 Aligned_cols=21 Identities=33% Similarity=0.748 Sum_probs=18.0
Q ss_pred EEEEcCCCCChHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNV 857 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~ 857 (1456)
.+|.||||||||+++..++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 589999999999998877654
No 330
>PRK14532 adenylate kinase; Provisional
Probab=91.95 E-value=0.12 Score=56.49 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=17.8
Q ss_pred EEEEcCCCCChHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNV 857 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~ 857 (1456)
.+|.|||||||||++..++..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999998877643
No 331
>PRK14531 adenylate kinase; Provisional
Probab=91.92 E-value=0.13 Score=56.12 Aligned_cols=22 Identities=32% Similarity=0.671 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+|.|||||||||++..++..+
T Consensus 5 i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 5 LLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6889999999999988776653
No 332
>PRK04040 adenylate kinase; Provisional
Probab=91.91 E-value=0.13 Score=56.74 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=20.4
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+.+|.|+|||||||++..++..+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 467899999999999998777665
No 333
>PRK06696 uridine kinase; Validated
Probab=91.88 E-value=0.2 Score=56.41 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=26.7
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEe
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT 871 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA 871 (1456)
+-+..|.|||||||||++..++..|-.. +..+++++
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~--g~~v~~~~ 57 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKR--GRPVIRAS 57 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEec
Confidence 4577899999999999999888777443 34454444
No 334
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.88 E-value=0.17 Score=57.06 Aligned_cols=24 Identities=46% Similarity=0.703 Sum_probs=18.7
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHH
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILN 856 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~ 856 (1456)
.|.=.+..||||||||+++.+.++
T Consensus 188 pprgvllygppg~gktml~kava~ 211 (408)
T KOG0727|consen 188 PPRGVLLYGPPGTGKTMLAKAVAN 211 (408)
T ss_pred CCcceEEeCCCCCcHHHHHHHHhh
Confidence 344578899999999988876653
No 335
>PLN02200 adenylate kinase family protein
Probab=91.87 E-value=0.13 Score=58.70 Aligned_cols=25 Identities=36% Similarity=0.703 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
+-+.+|.|||||||||++..++..+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999988877543
No 336
>PHA02542 41 41 helicase; Provisional
Probab=91.84 E-value=0.21 Score=62.62 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=43.0
Q ss_pred HHHH-hccCCC-cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHH
Q 000509 826 GAII-SGIQPG-LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIM 885 (1456)
Q Consensus 826 eAI~-sal~~g-ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~ 885 (1456)
..+. .|+.+| +++|-|+||.|||+++..++.+.... +.+||+.+-=-. .+++..|+.
T Consensus 180 D~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~--g~~Vl~fSLEM~-~~ql~~Rl~ 238 (473)
T PHA02542 180 NKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQ--GYNVLYISMEMA-EEVIAKRID 238 (473)
T ss_pred HHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhc--CCcEEEEeccCC-HHHHHHHHH
Confidence 3455 577766 88999999999999999999988754 789999885322 245566664
No 337
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=91.77 E-value=0.24 Score=65.15 Aligned_cols=24 Identities=46% Similarity=0.661 Sum_probs=19.5
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
+..+++||||||||+++..+...+
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999888776543
No 338
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.77 E-value=0.15 Score=63.49 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=20.4
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHH
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLY 859 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~ 859 (1456)
..++.||||||||++|-.++..+.
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 469999999999999988877664
No 339
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=91.74 E-value=0.18 Score=57.85 Aligned_cols=32 Identities=25% Similarity=0.558 Sum_probs=25.4
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEe
Q 000509 838 MVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT 871 (1456)
Q Consensus 838 LI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA 871 (1456)
=|.||||.||||++-.++..+... +.||-|+|
T Consensus 33 GiTG~PGaGKSTli~~l~~~~~~~--g~~VaVlA 64 (266)
T PF03308_consen 33 GITGPPGAGKSTLIDALIRELRER--GKRVAVLA 64 (266)
T ss_dssp EEEE-TTSSHHHHHHHHHHHHHHT--T--EEEEE
T ss_pred EeeCCCCCcHHHHHHHHHHHHhhc--CCceEEEE
Confidence 379999999999999999999876 77877776
No 340
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=91.71 E-value=0.079 Score=54.86 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=16.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L 858 (1456)
.||+|+||+|||+++..++..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~ 23 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL 23 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT
T ss_pred EeeECCCccHHHHHHHHHHHHc
Confidence 6899999999999998877665
No 341
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.69 E-value=0.15 Score=55.37 Aligned_cols=25 Identities=32% Similarity=0.671 Sum_probs=20.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHc
Q 000509 837 TMVVGPPGTGKTDTAVQILNVLYHN 861 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L~~~ 861 (1456)
.+|.|+||+||||++..++..+-..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~ 26 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKK 26 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHhhcc
Confidence 4799999999999999888777543
No 342
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.68 E-value=0.14 Score=55.32 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=19.9
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+.+|.||||+||||++-.+...+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 367899999999999998776554
No 343
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=91.62 E-value=0.41 Score=62.97 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=48.4
Q ss_pred CCCCCHHHHH---HHHhccCC------CcEEEEcCCCCChHHHHHHHHHHHH-HcCCCCcEEEEecCHHHHHHHHHH
Q 000509 817 SVRFTPTQVG---AIISGIQP------GLTMVVGPPGTGKTDTAVQILNVLY-HNCPSQRTLIITHSNQALNDLFEK 883 (1456)
Q Consensus 817 ~v~Ln~sQ~e---AI~sal~~------gltLI~GPPGTGKT~tia~iI~~L~-~~~p~~rILIvA~SN~AlD~L~ek 883 (1456)
.+..=+.|.+ +|..++.. +..+|..|.|||||. +.++-.++ ....++||+|-|+|..--+||+.|
T Consensus 23 ~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTl--aYLlPai~~A~~~~k~vVIST~T~~LQeQL~~k 97 (697)
T PRK11747 23 GFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTL--SYLLAGIPIARAEKKKLVISTATVALQEQLVSK 97 (697)
T ss_pred CCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhH--HHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHhh
Confidence 3556678987 78777754 788999999999983 33333333 222479999999999999999865
No 344
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=91.57 E-value=0.15 Score=57.25 Aligned_cols=32 Identities=25% Similarity=0.526 Sum_probs=24.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEE
Q 000509 837 TMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLII 870 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIv 870 (1456)
-+|.||||+||||-....-..+-+. +.++.++
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~--gr~~~vV 36 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAI--GRPVAVV 36 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHh--CCceEEE
Confidence 4799999999999888877767665 4444444
No 345
>PRK09165 replicative DNA helicase; Provisional
Probab=91.57 E-value=0.3 Score=61.67 Aligned_cols=62 Identities=21% Similarity=0.319 Sum_probs=46.3
Q ss_pred HHHHHhccCCC-cEEEEcCCCCChHHHHHHHHHHHHHcC-------------CCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 825 VGAIISGIQPG-LTMVVGPPGTGKTDTAVQILNVLYHNC-------------PSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 825 ~eAI~sal~~g-ltLI~GPPGTGKT~tia~iI~~L~~~~-------------p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.+.+..|+.+| +++|-|+||+|||+++.+++.++..++ .+.+||+.+.=..+ +++..|+...
T Consensus 207 LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~-~ql~~R~la~ 282 (497)
T PRK09165 207 LDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSA-EQLATRILSE 282 (497)
T ss_pred HhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCH-HHHHHHHHHH
Confidence 34555677664 889999999999999999998887543 25788888764444 6777777553
No 346
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.55 E-value=0.25 Score=59.22 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=29.5
Q ss_pred HHHHHhcc-CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEE
Q 000509 825 VGAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLI 869 (1456)
Q Consensus 825 ~eAI~sal-~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILI 869 (1456)
.+.+..++ ..+-.+|.||+||||||++..++..+- ++.||++
T Consensus 150 ~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~ip---~~~ri~t 192 (332)
T PRK13900 150 KEFLEHAVISKKNIIISGGTSTGKTTFTNAALREIP---AIERLIT 192 (332)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhCC---CCCeEEE
Confidence 34454444 467789999999999999988765542 2466654
No 347
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=91.53 E-value=0.14 Score=62.94 Aligned_cols=24 Identities=42% Similarity=0.642 Sum_probs=19.2
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNV 857 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~ 857 (1456)
+.-.++.||||||||+++-.++..
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 345789999999999988776654
No 348
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=91.51 E-value=0.27 Score=53.76 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=26.7
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEe
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT 871 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA 871 (1456)
-+.+|.|+||+||||.+..+...+-.. +.+++++.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~--g~~v~~~~ 38 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQEN--GYDVLFTR 38 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 357899999999999999888777543 55565543
No 349
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.50 E-value=0.17 Score=54.72 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+.++.||||+||||++..+...+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 578999999999999988877654
No 350
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.48 E-value=0.12 Score=61.67 Aligned_cols=19 Identities=53% Similarity=0.844 Sum_probs=16.1
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQIL 855 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI 855 (1456)
.|.+||||||||.++.+++
T Consensus 248 vLm~GPPGTGKTlLAKAvA 266 (491)
T KOG0738|consen 248 VLMVGPPGTGKTLLAKAVA 266 (491)
T ss_pred eeeeCCCCCcHHHHHHHHH
Confidence 6889999999998877655
No 351
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=91.45 E-value=0.28 Score=59.67 Aligned_cols=51 Identities=24% Similarity=0.399 Sum_probs=34.3
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEE--EecCHHHHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLI--ITHSNQALNDLFEKIM 885 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILI--vA~SN~AlD~L~ekL~ 885 (1456)
.-.+|.||||+|||+++..++..+..++++-++.| +-.-..-+.++.+.+.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIl 222 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVK 222 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhc
Confidence 35789999999999999988888877655544222 2222235666666654
No 352
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=91.43 E-value=0.15 Score=55.12 Aligned_cols=29 Identities=34% Similarity=0.588 Sum_probs=23.7
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHHc
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVLYHN 861 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L~~~ 861 (1456)
.+|+++|.||-|||||+++-.+...|...
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~~L~~~ 46 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRYALGGQ 46 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHHHHHSS
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 57999999999999999997776666543
No 353
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.43 E-value=0.19 Score=63.46 Aligned_cols=26 Identities=31% Similarity=0.403 Sum_probs=22.3
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLY 859 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~ 859 (1456)
++..++.||||||||+++-.++..+.
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhc
Confidence 35689999999999999998887774
No 354
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.42 E-value=0.25 Score=59.54 Aligned_cols=48 Identities=19% Similarity=0.360 Sum_probs=33.0
Q ss_pred CHHHHHHHHhcc-CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEe
Q 000509 821 TPTQVGAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT 871 (1456)
Q Consensus 821 n~sQ~eAI~sal-~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA 871 (1456)
++...+.+..++ ..+..+|.||+||||||++..++..+ .+..|++.+=
T Consensus 148 ~~~~~~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i---~~~~rivtiE 196 (344)
T PRK13851 148 NGDLEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAI---PPQERLITIE 196 (344)
T ss_pred cHHHHHHHHHHHHcCCeEEEECCCCccHHHHHHHHHccc---CCCCCEEEEC
Confidence 344555555555 45678999999999999998876554 2356765543
No 355
>PRK12678 transcription termination factor Rho; Provisional
Probab=91.42 E-value=0.21 Score=62.91 Aligned_cols=31 Identities=32% Similarity=0.479 Sum_probs=26.2
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCC
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQ 865 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~ 865 (1456)
.-.+|+||||||||+++..|++.+..+++.-
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~ 447 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITTNNPEC 447 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhhcCCCe
Confidence 4579999999999999999888888776653
No 356
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=91.40 E-value=0.44 Score=62.08 Aligned_cols=63 Identities=25% Similarity=0.410 Sum_probs=50.0
Q ss_pred CCHHHHHHHHh---ccCCC--cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 820 FTPTQVGAIIS---GIQPG--LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 820 Ln~sQ~eAI~s---al~~g--ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
-+..|-.||.. ++..| ..++.|.+|||||.+++.++..+ +.++||+||+...+.++.+.|...
T Consensus 10 ~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~~~~~~-----~~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 10 PAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMANVIAQV-----NRPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred CChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHHHHHHh-----CCCEEEEECCHHHHHHHHHHHHHh
Confidence 35567777654 34333 56799999999999999877553 678999999999999999999876
No 357
>PRK07667 uridine kinase; Provisional
Probab=91.38 E-value=0.26 Score=54.34 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=28.1
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSN 874 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN 874 (1456)
-+..|.|+|||||||++..+...+-.. +.++.+++.-+
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~--~~~~~~i~~Dd 55 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQE--GIPFHIFHIDD 55 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEEcCc
Confidence 366789999999999998888777543 45666665544
No 358
>PRK05439 pantothenate kinase; Provisional
Probab=91.38 E-value=0.25 Score=58.65 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=26.1
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
+..|.||||+||||++..+...+-....+.+|.+++.
T Consensus 88 iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~ 124 (311)
T PRK05439 88 IIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTT 124 (311)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEec
Confidence 5669999999999999876664433223566776663
No 359
>PRK02496 adk adenylate kinase; Provisional
Probab=91.35 E-value=0.16 Score=55.19 Aligned_cols=22 Identities=41% Similarity=0.751 Sum_probs=18.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+|.||||+||||++..++..+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999988776554
No 360
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=91.35 E-value=0.14 Score=59.58 Aligned_cols=25 Identities=40% Similarity=0.624 Sum_probs=19.7
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
|-..+|+||||||||..+-.+++.+
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~m 190 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATM 190 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhc
Confidence 4467899999999998877666555
No 361
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=91.34 E-value=0.28 Score=51.94 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=21.7
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHc
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHN 861 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~ 861 (1456)
+.+|.|+||||||+++..+...+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~ 26 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQR 26 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999888877643
No 362
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=91.34 E-value=0.29 Score=58.92 Aligned_cols=58 Identities=12% Similarity=0.046 Sum_probs=36.5
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHH----cCCCCcEEEEecCHH-HHHHHHHHHHhcCCC
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVLYH----NCPSQRTLIITHSNQ-ALNDLFEKIMQRDVP 890 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L~~----~~p~~rILIvA~SN~-AlD~L~ekL~~l~i~ 890 (1456)
...+|.|.||||||||+++.+++.+... ...+.+++.+..-.. -.+.+.+....++++
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCC
Confidence 3468999999999999999988754431 123468888776442 233344433334443
No 363
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.33 E-value=0.12 Score=64.62 Aligned_cols=53 Identities=26% Similarity=0.374 Sum_probs=35.5
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcC-----CCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNC-----PSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~-----p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.=.|++||||||||.++-+++..+--.+ |.---=+..-|...+.++|+.....
T Consensus 224 rGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~ 281 (802)
T KOG0733|consen 224 RGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSN 281 (802)
T ss_pred CceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhcc
Confidence 3478999999999999988887763221 0000112335888888888877653
No 364
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.30 E-value=0.48 Score=57.83 Aligned_cols=55 Identities=29% Similarity=0.451 Sum_probs=45.8
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEe---cCHHHHHHHHHHHHhcCCC
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT---HSNQALNDLFEKIMQRDVP 890 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA---~SN~AlD~L~ekL~~l~i~ 890 (1456)
|.+.+.+|-=|+|||||+..++.+|-+ .+.++|+|| +-..|.+||..--.+.+++
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk--~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKK--KGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHH--cCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 456788999999999999999988877 388888887 6788999987776777766
No 365
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.28 E-value=0.25 Score=59.13 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=29.9
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
-+.-|.||||+||||++..++..+-.. +.+|.|++.
T Consensus 57 ~~igi~G~~GaGKSTl~~~l~~~l~~~--g~~v~vi~~ 92 (332)
T PRK09435 57 LRIGITGVPGVGKSTFIEALGMHLIEQ--GHKVAVLAV 92 (332)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEe
Confidence 356689999999999999999888755 678888774
No 366
>PRK13764 ATPase; Provisional
Probab=91.26 E-value=0.31 Score=62.45 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLY 859 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~ 859 (1456)
.+..+|.|||||||||++..++..+.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45689999999999999998887775
No 367
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=91.25 E-value=0.18 Score=63.82 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
..+.++.||||||||+|+..++..+
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999998777665
No 368
>PRK05748 replicative DNA helicase; Provisional
Probab=91.22 E-value=0.26 Score=61.41 Aligned_cols=60 Identities=25% Similarity=0.426 Sum_probs=44.4
Q ss_pred HHHHHHhccCCC-cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHH
Q 000509 824 QVGAIISGIQPG-LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIM 885 (1456)
Q Consensus 824 Q~eAI~sal~~g-ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~ 885 (1456)
-.+.+..|+.+| +++|-|+||+|||+++.+++.++... .+.+|++++.=..+ +++..|+.
T Consensus 192 ~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~-~g~~v~~fSlEms~-~~l~~R~l 252 (448)
T PRK05748 192 DLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATK-TDKNVAIFSLEMGA-ESLVMRML 252 (448)
T ss_pred HHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHh-CCCeEEEEeCCCCH-HHHHHHHH
Confidence 334455688766 88999999999999999999887643 26789888864433 36666664
No 369
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=91.19 E-value=0.17 Score=55.40 Aligned_cols=21 Identities=33% Similarity=0.778 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNV 857 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~ 857 (1456)
.+|.||||+||||.+..++..
T Consensus 3 iiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 589999999999999988877
No 370
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.17 E-value=0.13 Score=54.69 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=16.4
Q ss_pred EEEEcCCCCChHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNV 857 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~ 857 (1456)
.+|.|+|||||||++..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 479999999999999888755
No 371
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.14 E-value=0.19 Score=55.67 Aligned_cols=27 Identities=33% Similarity=0.527 Sum_probs=23.8
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHc
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHN 861 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~ 861 (1456)
++.++.|+||+|||+.+-+++..|-.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 467899999999999999999888655
No 372
>PRK14528 adenylate kinase; Provisional
Probab=91.13 E-value=0.18 Score=55.42 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=18.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+|.||||+||||++..+...+
T Consensus 4 i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 4 IIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999988766443
No 373
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=91.11 E-value=0.4 Score=55.20 Aligned_cols=59 Identities=27% Similarity=0.452 Sum_probs=43.6
Q ss_pred HHHHhccCCC-cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 826 GAIISGIQPG-LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 826 eAI~sal~~g-ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
+.+..++.+| +++|-|+||.|||+++.+++.++..+. +.+||+++.=... +++..|+..
T Consensus 10 D~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-~~~vly~SlEm~~-~~l~~R~la 69 (259)
T PF03796_consen 10 DRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNG-GYPVLYFSLEMSE-EELAARLLA 69 (259)
T ss_dssp HHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTT-SSEEEEEESSS-H-HHHHHHHHH
T ss_pred HHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhc-CCeEEEEcCCCCH-HHHHHHHHH
Confidence 3444577665 999999999999999999999998763 4889999974433 345555544
No 374
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=91.00 E-value=0.29 Score=58.22 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=41.7
Q ss_pred HHHHHHHh-cc-CCCcEEEEcCCCCChHHHHHHHHHHHHH----cCCCCcEEEEecCHH-HHHHHHHHHHhcCCC
Q 000509 823 TQVGAIIS-GI-QPGLTMVVGPPGTGKTDTAVQILNVLYH----NCPSQRTLIITHSNQ-ALNDLFEKIMQRDVP 890 (1456)
Q Consensus 823 sQ~eAI~s-al-~~gltLI~GPPGTGKT~tia~iI~~L~~----~~p~~rILIvA~SN~-AlD~L~ekL~~l~i~ 890 (1456)
...+.+.. ++ ...++.|.||||||||+++.+++.+... ...+.+++.+..-.. -.+.+.+....++++
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d 157 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVD 157 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCC
Confidence 34445443 34 3468999999999999999888754321 123568888875443 244444444444443
No 375
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=90.98 E-value=0.15 Score=61.22 Aligned_cols=26 Identities=42% Similarity=0.673 Sum_probs=20.8
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
.....|+.||||||||.++.+++..|
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eL 74 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKEL 74 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHC
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHh
Confidence 34678999999999999999888776
No 376
>CHL00195 ycf46 Ycf46; Provisional
Probab=90.98 E-value=0.22 Score=62.59 Aligned_cols=25 Identities=44% Similarity=0.469 Sum_probs=19.8
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
+.-.|+.||||||||.++-.++..+
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4457899999999998887776543
No 377
>PRK13947 shikimate kinase; Provisional
Probab=90.94 E-value=0.19 Score=53.78 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+|.||||||||+++..++..|
T Consensus 4 I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 5889999999999988777655
No 378
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=90.93 E-value=0.34 Score=49.33 Aligned_cols=44 Identities=27% Similarity=0.388 Sum_probs=33.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIM 885 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~ 885 (1456)
.++.|.+|+|||+++..++..+... +.+|+++-.-. +.+.+.+.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~--g~~V~~id~D~---~~~~~~~~ 45 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK--GKPVLAIDADP---DDLPERLS 45 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCc---hhhHHHHh
Confidence 5789999999999999998888664 77887776443 55555444
No 379
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.88 E-value=0.17 Score=60.12 Aligned_cols=20 Identities=45% Similarity=0.657 Sum_probs=16.4
Q ss_pred cEEEEcCCCCChHHHHHHHH
Q 000509 836 LTMVVGPPGTGKTDTAVQIL 855 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI 855 (1456)
=.|..||||||||.+|-+.+
T Consensus 187 GVLLYGPPGTGKTLLAkAVA 206 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVA 206 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHH
Confidence 46889999999997776555
No 380
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=90.84 E-value=0.19 Score=55.26 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=21.2
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHc
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHN 861 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~ 861 (1456)
+.-|.||||+||||++..++..|-..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 35699999999999998888777543
No 381
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=90.81 E-value=0.25 Score=57.14 Aligned_cols=25 Identities=44% Similarity=0.612 Sum_probs=20.2
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
-..+++.||||.||||++.-+++.+
T Consensus 52 lDHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred cCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 4689999999999998877555555
No 382
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=90.80 E-value=0.59 Score=53.50 Aligned_cols=72 Identities=24% Similarity=0.428 Sum_probs=46.8
Q ss_pred HHHHHHHH-------hccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCH-HHHHHHHHHHHhcCCCccc
Q 000509 822 PTQVGAII-------SGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSN-QALNDLFEKIMQRDVPARY 893 (1456)
Q Consensus 822 ~sQ~eAI~-------sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN-~AlD~L~ekL~~l~i~e~~ 893 (1456)
+.|++++. .+....-+|++|+.|||||.++-+++..+... +-|++=+.... ..+..|++.|... +.+.
T Consensus 33 e~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~--GLRlIev~k~~L~~l~~l~~~l~~~--~~kF 108 (249)
T PF05673_consen 33 ERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ--GLRLIEVSKEDLGDLPELLDLLRDR--PYKF 108 (249)
T ss_pred HHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc--CceEEEECHHHhccHHHHHHHHhcC--CCCE
Confidence 46666654 34456778999999999999999888777655 56665555544 3345556555533 3344
Q ss_pred EEEc
Q 000509 894 LLRL 897 (1456)
Q Consensus 894 llRl 897 (1456)
++-+
T Consensus 109 Ilf~ 112 (249)
T PF05673_consen 109 ILFC 112 (249)
T ss_pred EEEe
Confidence 4443
No 383
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=90.78 E-value=0.21 Score=52.23 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+|.||||||||+++..+...+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 4789999999999998877655
No 384
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.74 E-value=0.24 Score=60.86 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=26.0
Q ss_pred HHHHHHHhccC----CCcEEEEcCCCCChHHHHHHHHHHHH
Q 000509 823 TQVGAIISGIQ----PGLTMVVGPPGTGKTDTAVQILNVLY 859 (1456)
Q Consensus 823 sQ~eAI~sal~----~gltLI~GPPGTGKT~tia~iI~~L~ 859 (1456)
.-.+.+.+++. +...+++||||||||+++-.++..+.
T Consensus 23 ~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 23 HITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred HHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 33444555443 33467899999999999988877664
No 385
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=90.72 E-value=1 Score=63.09 Aligned_cols=48 Identities=27% Similarity=0.391 Sum_probs=37.2
Q ss_pred EEcCCCCChHHHHHH-HHHHHHHcC----------CCCcEEEEecCHHHHHHHHHHHHh
Q 000509 839 VVGPPGTGKTDTAVQ-ILNVLYHNC----------PSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 839 I~GPPGTGKT~tia~-iI~~L~~~~----------p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
|..|.|||||..+.- ++..++... .+.++|+++|+..-++++.+.|..
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~ 59 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQI 59 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHH
Confidence 567999999988776 666666531 246899999999999998887753
No 386
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=90.71 E-value=0.24 Score=53.79 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=32.2
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
..+|.||||||||+.+..++..+ +.+++.++.....-+++.+|+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~-----~~~~~~iat~~~~~~e~~~ri~~ 48 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS-----GLQVLYIATAQPFDDEMAARIAH 48 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc-----CCCcEeCcCCCCChHHHHHHHHH
Confidence 57999999999999998876542 34555666544445566677643
No 387
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.70 E-value=0.24 Score=63.05 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.9
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHH
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLY 859 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~ 859 (1456)
..++.||||||||+++..++..|.
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 468999999999999998887775
No 388
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=90.70 E-value=0.26 Score=52.76 Aligned_cols=25 Identities=32% Similarity=0.585 Sum_probs=21.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHc
Q 000509 837 TMVVGPPGTGKTDTAVQILNVLYHN 861 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L~~~ 861 (1456)
..|.||||+||||++..++..|-..
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhc
Confidence 4799999999999999888777655
No 389
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=90.67 E-value=0.19 Score=56.09 Aligned_cols=21 Identities=38% Similarity=0.741 Sum_probs=17.8
Q ss_pred EEEEcCCCCChHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNV 857 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~ 857 (1456)
.+|.||||+||||++..++..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~ 22 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEK 22 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 579999999999998877643
No 390
>PRK08760 replicative DNA helicase; Provisional
Probab=90.66 E-value=0.6 Score=58.73 Aligned_cols=62 Identities=21% Similarity=0.362 Sum_probs=46.9
Q ss_pred HHHHHHhccCCC-cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 824 QVGAIISGIQPG-LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 824 Q~eAI~sal~~g-ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
..+.+..|+.+| +++|-|.||+|||+++..++.++..+ .+.+|++.+.=... ++++.|+...
T Consensus 218 ~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~-~g~~V~~fSlEMs~-~ql~~Rl~a~ 280 (476)
T PRK08760 218 DFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIK-SKKGVAVFSMEMSA-SQLAMRLISS 280 (476)
T ss_pred HHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHh-cCCceEEEeccCCH-HHHHHHHHHh
Confidence 445566788655 89999999999999999999888643 25788888764444 5677777654
No 391
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=90.65 E-value=0.29 Score=57.07 Aligned_cols=35 Identities=29% Similarity=0.463 Sum_probs=24.2
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEe
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT 871 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA 871 (1456)
++.+|.|.||+|||+.+.++...+-.. +.++.++.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~--~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK--GKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT--T--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc--CCEEEEEc
Confidence 578999999999999999998877663 56666666
No 392
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=90.65 E-value=0.17 Score=54.69 Aligned_cols=20 Identities=35% Similarity=0.614 Sum_probs=16.4
Q ss_pred cEEEEcCCCCChHHHHHHHH
Q 000509 836 LTMVVGPPGTGKTDTAVQIL 855 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI 855 (1456)
..+|.|.|||||||+.-.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 46899999999998876554
No 393
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=90.64 E-value=0.39 Score=58.79 Aligned_cols=42 Identities=26% Similarity=0.276 Sum_probs=37.5
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQ 875 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~ 875 (1456)
.++.+|+||.|.|||+++.++.+.+....|+.+++.++..+-
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f 154 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDF 154 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHH
Confidence 468999999999999999999999999988889998887554
No 394
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=90.60 E-value=0.29 Score=56.41 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=30.8
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
+.++.|.||+|||++++.++..+... ++|||++.-
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~--g~~vLlvd~ 36 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQ--GKKVLLVST 36 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHC--CCCceEEeC
Confidence 57899999999999999999888876 789998873
No 395
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=90.54 E-value=0.26 Score=63.07 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=26.5
Q ss_pred HHHHHHHhcc----CCCcEEEEcCCCCChHHHHHHHHHHHH
Q 000509 823 TQVGAIISGI----QPGLTMVVGPPGTGKTDTAVQILNVLY 859 (1456)
Q Consensus 823 sQ~eAI~sal----~~gltLI~GPPGTGKT~tia~iI~~L~ 859 (1456)
.-.+.+..++ -+...|+.||||||||++|..++..|.
T Consensus 23 ~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 23 LIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3344444444 233568999999999999998888775
No 396
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=90.54 E-value=0.58 Score=62.80 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=60.5
Q ss_pred CCCCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 816 NSVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 816 n~v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
-++.|++-|++||.......=.+|..|-|+|||.|+-.+|..-+.+ ++|+..++|..+-.||.+..+.+.
T Consensus 116 ~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--~qrviYTsPIKALsNQKyrdl~~~ 185 (1041)
T COG4581 116 YPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--GQRVIYTSPIKALSNQKYRDLLAK 185 (1041)
T ss_pred CCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--CCceEeccchhhhhhhHHHHHHHH
Confidence 3688999999999888766668999999999999999999888877 889999999888888887777653
No 397
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.42 E-value=0.15 Score=63.73 Aligned_cols=65 Identities=26% Similarity=0.371 Sum_probs=42.6
Q ss_pred HHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcC-----CCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 822 PTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNC-----PSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 822 ~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~-----p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
|.+-+|+--.. |.=.|.+||||||||-++-++++.-=.|| |.-=--.|.-|..|+-++|.|....
T Consensus 534 pd~~k~lGi~~-PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 534 PDLFKALGIDA-PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARAS 603 (802)
T ss_pred HHHHHHhCCCC-CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 45666663333 33479999999999988777765533332 1111224667999999999998753
No 398
>PRK00279 adk adenylate kinase; Reviewed
Probab=90.40 E-value=0.22 Score=55.77 Aligned_cols=21 Identities=38% Similarity=0.676 Sum_probs=17.7
Q ss_pred EEEEcCCCCChHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNV 857 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~ 857 (1456)
.+|.||||+||||++..++..
T Consensus 3 I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999998877644
No 399
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=90.34 E-value=0.58 Score=50.96 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=28.4
Q ss_pred HhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEE
Q 000509 829 ISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLII 870 (1456)
Q Consensus 829 ~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIv 870 (1456)
...-.+.+.+|.|+||+|||+++..+...+... +..++++
T Consensus 13 ~~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~--~~~~~~l 52 (184)
T TIGR00455 13 LNGHRGVVIWLTGLSGSGKSTIANALEKKLESK--GYRVYVL 52 (184)
T ss_pred HhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 344445688899999999999999888776533 3344444
No 400
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=90.33 E-value=0.3 Score=53.89 Aligned_cols=33 Identities=36% Similarity=0.496 Sum_probs=26.4
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEe
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT 871 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA 871 (1456)
..-|-||||+|||+++..++..|-.. .++.|++
T Consensus 15 ~i~v~Gp~GSGKTaLie~~~~~L~~~---~~~aVI~ 47 (202)
T COG0378 15 RIGVGGPPGSGKTALIEKTLRALKDE---YKIAVIT 47 (202)
T ss_pred EEEecCCCCcCHHHHHHHHHHHHHhh---CCeEEEe
Confidence 34578999999999999999998764 5666665
No 401
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.33 E-value=0.22 Score=61.78 Aligned_cols=30 Identities=23% Similarity=0.457 Sum_probs=24.0
Q ss_pred HhccCCCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 829 ISGIQPGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 829 ~sal~~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
...+...+.+|.||+|+|||||+-.+...+
T Consensus 105 ~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 105 TPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred ccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 334456799999999999999998777665
No 402
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=90.32 E-value=0.81 Score=60.41 Aligned_cols=80 Identities=23% Similarity=0.250 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHH-HHHHcC-----CCCcEEEEecCHHHHHHHHHHHHh----c
Q 000509 818 VRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILN-VLYHNC-----PSQRTLIITHSNQALNDLFEKIMQ----R 887 (1456)
Q Consensus 818 v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~-~L~~~~-----p~~rILIvA~SN~AlD~L~ekL~~----l 887 (1456)
..+|+-|..||-.+....-+||..|-|||||-.|.--+. .|+... .+-.+|.+||=..-.+++..+|.. +
T Consensus 21 ~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~ 100 (814)
T COG1201 21 TSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLREL 100 (814)
T ss_pred CCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHc
Confidence 468999999999998877899999999999988776444 455552 124699999988888888888865 3
Q ss_pred CCCcccEEEccC
Q 000509 888 DVPARYLLRLGQ 899 (1456)
Q Consensus 888 ~i~e~~llRlG~ 899 (1456)
|++- -+|-|.
T Consensus 101 G~~v--~vRhGD 110 (814)
T COG1201 101 GIEV--AVRHGD 110 (814)
T ss_pred CCcc--ceecCC
Confidence 4442 466654
No 403
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=90.30 E-value=0.37 Score=56.79 Aligned_cols=38 Identities=32% Similarity=0.503 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCC-CCcEEEEec
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCP-SQRTLIITH 872 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p-~~rILIvA~ 872 (1456)
+-+.-|.||+|+||||++. ++..++...+ +.+|.+++.
T Consensus 62 p~IIGIaG~~GSGKSTlar-~L~~ll~~~~~~g~V~vi~~ 100 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTAR-ILQALLSRWPEHRKVELITT 100 (290)
T ss_pred CEEEEEECCCCCCHHHHHH-HHHHHHhhcCCCCceEEEec
Confidence 4566799999999999885 4555555544 345666653
No 404
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=90.27 E-value=0.18 Score=55.79 Aligned_cols=27 Identities=37% Similarity=0.709 Sum_probs=20.9
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 832 IQPGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 832 l~~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
-+|-+.+|.||||+|||+++..+...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~ 39 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEF 39 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhc
Confidence 356788899999999999999877655
No 405
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=90.25 E-value=0.38 Score=50.25 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=24.2
Q ss_pred HHhccCC-CcEEEEcCCCCChHHHHHHHHHHH
Q 000509 828 IISGIQP-GLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 828 I~sal~~-gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
+.+.+.+ .+.++.|+.|+|||+++..++..+
T Consensus 15 l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 15 FAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3344444 478899999999999999888776
No 406
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=90.25 E-value=0.19 Score=58.86 Aligned_cols=24 Identities=29% Similarity=0.453 Sum_probs=19.8
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+.++.|||||||||++..+...+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 367889999999999998876544
No 407
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=90.24 E-value=0.28 Score=58.76 Aligned_cols=40 Identities=28% Similarity=0.308 Sum_probs=28.7
Q ss_pred CCHHHHHHHHhccC----CCcEEEEcCCCCChHHHHHHHHHHHH
Q 000509 820 FTPTQVGAIISGIQ----PGLTMVVGPPGTGKTDTAVQILNVLY 859 (1456)
Q Consensus 820 Ln~sQ~eAI~sal~----~gltLI~GPPGTGKT~tia~iI~~L~ 859 (1456)
-.+...+.+...+. +...++.||||+|||+++-.++..+.
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 18 GQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34555555555442 34568999999999999988887765
No 408
>PRK05595 replicative DNA helicase; Provisional
Probab=90.23 E-value=0.71 Score=57.63 Aligned_cols=61 Identities=23% Similarity=0.321 Sum_probs=45.5
Q ss_pred HHHHHHhccCCC-cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHh
Q 000509 824 QVGAIISGIQPG-LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQ 886 (1456)
Q Consensus 824 Q~eAI~sal~~g-ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~ 886 (1456)
....+..|+.+| +++|-|.||.|||+++.+++.++..+ .+.+|++++.=. ...++..|+..
T Consensus 190 ~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~-~g~~vl~fSlEm-s~~~l~~R~~a 251 (444)
T PRK05595 190 ELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALR-EGKSVAIFSLEM-SKEQLAYKLLC 251 (444)
T ss_pred HHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHH-cCCcEEEEecCC-CHHHHHHHHHH
Confidence 444555678766 88899999999999999999886532 268899887643 55667777654
No 409
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=90.21 E-value=0.4 Score=51.98 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=26.0
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEe
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT 871 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA 871 (1456)
+.+|.||+|+||||++..+...+-.. +.++..+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~--g~~v~~~~ 35 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEAR--GYEVVLTR 35 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 46899999999999999888877543 55665443
No 410
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=90.20 E-value=0.3 Score=53.30 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=26.2
Q ss_pred HHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHH
Q 000509 827 AIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYH 860 (1456)
Q Consensus 827 AI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~ 860 (1456)
+|...--+...++.||||+|||+++..++..+..
T Consensus 7 ~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 7 ALEKGRLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred HHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3444434567899999999999999988877763
No 411
>PHA02624 large T antigen; Provisional
Probab=90.19 E-value=0.28 Score=62.31 Aligned_cols=38 Identities=24% Similarity=0.465 Sum_probs=27.9
Q ss_pred HHhcc-CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEE
Q 000509 828 IISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLII 870 (1456)
Q Consensus 828 I~sal-~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIv 870 (1456)
+..++ .....++.||||||||+++..++..| +.+++-+
T Consensus 424 ~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L-----~G~vlsV 462 (647)
T PHA02624 424 IVENVPKRRYWLFKGPVNSGKTTLAAALLDLC-----GGKSLNV 462 (647)
T ss_pred HHhcCCCCeEEEEECCCCCCHHHHHHHHHHHc-----CCeEEEe
Confidence 33444 34689999999999999999888666 4445554
No 412
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=90.19 E-value=0.73 Score=60.24 Aligned_cols=67 Identities=24% Similarity=0.352 Sum_probs=53.4
Q ss_pred CCCCCCHHHHHHHHhc---cCCC--cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 816 NSVRFTPTQVGAIISG---IQPG--LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 816 n~v~Ln~sQ~eAI~sa---l~~g--ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.++.+++.|..++... +..+ -.+|.|.+|||||.+++.++..+ +.++||+|++...+.++.+.|...
T Consensus 9 ~~~~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~l~~~~-----~r~vLIVt~~~~~A~~l~~dL~~~ 80 (652)
T PRK05298 9 SPYKPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMANVIARL-----QRPTLVLAHNKTLAAQLYSEFKEF 80 (652)
T ss_pred cCCCCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHHHHHHh-----CCCEEEEECCHHHHHHHHHHHHHh
Confidence 3577889998887654 3222 46799999999999988765432 678999999999999999999775
No 413
>PRK06547 hypothetical protein; Provisional
Probab=90.19 E-value=0.24 Score=53.86 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=20.4
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHH
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNV 857 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~ 857 (1456)
.+.+.+|.||+|||||+++..++..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3456778899999999999877765
No 414
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=90.16 E-value=0.48 Score=62.72 Aligned_cols=68 Identities=15% Similarity=0.117 Sum_probs=48.4
Q ss_pred CCHHHHHHHHhccCCC-cEEEEcCCCCChHHHHHHHHHHHHHcC-CCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 820 FTPTQVGAIISGIQPG-LTMVVGPPGTGKTDTAVQILNVLYHNC-PSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 820 Ln~sQ~eAI~sal~~g-ltLI~GPPGTGKT~tia~iI~~L~~~~-p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.+|-|.++|...+... ..+++.|.|||||.+++.-...+..+. ..+++++++|+..-++|+.+.+.++
T Consensus 16 PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~ 85 (844)
T TIGR02621 16 PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKI 85 (844)
T ss_pred CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHH
Confidence 5789999999887544 677889999999976542121121111 1246667889999999998887764
No 415
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=90.08 E-value=0.2 Score=63.19 Aligned_cols=22 Identities=45% Similarity=0.643 Sum_probs=18.7
Q ss_pred cEEEEcCCCCChHHHHHHHHHH
Q 000509 836 LTMVVGPPGTGKTDTAVQILNV 857 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~ 857 (1456)
-.++.||||||||+++..++..
T Consensus 90 giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999998877654
No 416
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=90.03 E-value=0.2 Score=57.05 Aligned_cols=22 Identities=45% Similarity=0.712 Sum_probs=18.5
Q ss_pred CCcEEEEcCCCCChHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQIL 855 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI 855 (1456)
|.-.|..||||||||+++-+++
T Consensus 151 PknVLFyGppGTGKTm~Akala 172 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALA 172 (368)
T ss_pred cceeEEECCCCccHHHHHHHHh
Confidence 4567899999999999988665
No 417
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=90.02 E-value=0.18 Score=65.81 Aligned_cols=67 Identities=24% Similarity=0.407 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcC--CCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 819 RFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNC--PSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~--p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
.||+.|.+|+... .|..+|.++||||||+|++..|++|+... ...+||++|+||.|+.++.+++.++
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~ 70 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKL 70 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHH
Confidence 5899999999877 67799999999999999999999999874 3467999999999999999999886
No 418
>PTZ00088 adenylate kinase 1; Provisional
Probab=89.92 E-value=0.25 Score=56.20 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=18.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+|.||||+||||++..++..+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999888776543
No 419
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.89 E-value=0.3 Score=62.79 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=21.8
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLY 859 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~ 859 (1456)
+...|+.||||||||+++..++..+.
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34669999999999999988887764
No 420
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=89.85 E-value=0.37 Score=58.81 Aligned_cols=51 Identities=20% Similarity=0.379 Sum_probs=34.1
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCH--HHHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSN--QALNDLFEKIM 885 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN--~AlD~L~ekL~ 885 (1456)
...+|.||||||||+++..+...+..++++-.+.|+..-+ .-+.++.+.+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIl 221 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVK 221 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhh
Confidence 4689999999999998887777666553443443333323 56667776664
No 421
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.78 E-value=0.29 Score=64.74 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=22.0
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLY 859 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~ 859 (1456)
+...|+.||||||||+++-.++..|.
T Consensus 38 ~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 34558999999999999998888775
No 422
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.76 E-value=0.44 Score=58.81 Aligned_cols=38 Identities=24% Similarity=0.448 Sum_probs=27.4
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEE
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLII 870 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIv 870 (1456)
..++..+.||.|+|||||+..++...+......++.++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i 227 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALL 227 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 35789999999999999999998765443223344333
No 423
>PLN02165 adenylate isopentenyltransferase
Probab=89.74 E-value=0.29 Score=58.39 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=25.0
Q ss_pred HHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 823 TQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 823 sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
.|+.++... ...+.+|.||+|||||+++..++..+
T Consensus 33 ~~~~~~~~~-~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 33 TSVAMEQNC-KDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred cccccccCC-CCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 344444333 34589999999999999998866543
No 424
>PRK06217 hypothetical protein; Validated
Probab=89.70 E-value=0.25 Score=53.86 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=19.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+|.|+|||||||++..+...+
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999887654
No 425
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=89.64 E-value=0.57 Score=55.10 Aligned_cols=26 Identities=35% Similarity=0.625 Sum_probs=23.4
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHc
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHN 861 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~ 861 (1456)
..|+.||||||||+++..++..|+-.
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~ 51 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCE 51 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCC
Confidence 58999999999999999999998744
No 426
>PRK03846 adenylylsulfate kinase; Provisional
Probab=89.52 E-value=0.58 Score=51.77 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=31.7
Q ss_pred CHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEE
Q 000509 821 TPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLII 870 (1456)
Q Consensus 821 n~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIv 870 (1456)
+..+.++ +..-++.+..|.|+||+||||++..+...+... +..++++
T Consensus 12 ~~~~~~~-~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~--~~~~~~l 58 (198)
T PRK03846 12 TKAQREQ-LHGHKGVVLWFTGLSGSGKSTVAGALEEALHEL--GVSTYLL 58 (198)
T ss_pred CHHHHHH-hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC--CCCEEEE
Confidence 4455553 333456688899999999999888777777543 4444444
No 427
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.48 E-value=0.35 Score=60.74 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=21.2
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLY 859 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~ 859 (1456)
+...|+.||||||||+++-.++..|.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHc
Confidence 34689999999999998887776653
No 428
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=89.45 E-value=0.45 Score=53.45 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=30.1
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
+.++.|.||+|||++++.++..+... +.|||++..
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~--g~~~~l~~~ 35 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEE--GKKVLLVST 35 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHC--CCcEEEEEC
Confidence 36789999999999999999888876 788888864
No 429
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=89.44 E-value=0.28 Score=51.81 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=18.9
Q ss_pred cEEEEcCCCCChHHHHHHHHHH
Q 000509 836 LTMVVGPPGTGKTDTAVQILNV 857 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~ 857 (1456)
=.||.|-||||||+++.+++..
T Consensus 9 NILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHH
Confidence 3799999999999999888743
No 430
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.28 E-value=0.4 Score=61.09 Aligned_cols=51 Identities=31% Similarity=0.393 Sum_probs=35.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHcC---CCCcE--EEEecCHHHHHHHHHHHHhc
Q 000509 837 TMVVGPPGTGKTDTAVQILNVLYHNC---PSQRT--LIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L~~~~---p~~rI--LIvA~SN~AlD~L~ekL~~l 887 (1456)
.+..||||||||.++.+++.+.--++ .+.-+ =.+..|.+++.++|+|....
T Consensus 704 iLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a 759 (952)
T KOG0735|consen 704 ILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSA 759 (952)
T ss_pred eEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhcc
Confidence 68899999999999998876532111 00000 13567999999999997653
No 431
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=89.25 E-value=1.1 Score=60.92 Aligned_cols=69 Identities=26% Similarity=0.320 Sum_probs=54.2
Q ss_pred CCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhcCCCc
Q 000509 818 VRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPA 891 (1456)
Q Consensus 818 v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l~i~e 891 (1456)
-.|.+-|.+||..++...=+++.-|.|+|||-+.. +-+ |.. +..+||++|+-..+.+-+.++.+.++..
T Consensus 459 ~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQ-LPA-L~~---~GiTLVISPLiSLmqDQV~~L~~~GI~A 527 (1195)
T PLN03137 459 HSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQ-LPA-LIC---PGITLVISPLVSLIQDQIMNLLQANIPA 527 (1195)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHH-HHH-HHc---CCcEEEEeCHHHHHHHHHHHHHhCCCeE
Confidence 36899999999999988889999999999995543 222 222 4689999999999876677777777653
No 432
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=89.24 E-value=0.53 Score=57.23 Aligned_cols=42 Identities=36% Similarity=0.454 Sum_probs=36.0
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQAL 877 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~Al 877 (1456)
..+.-|.|+||||||+++..++..|-.. +.+|-++-|+.+..
T Consensus 205 ~~~~~~~g~~~~GKtt~~~~l~~~l~~~--g~~v~~iKh~~h~~ 246 (366)
T PRK14489 205 PPLLGVVGYSGTGKTTLLEKLIPELIAR--GYRIGLIKHSHHRV 246 (366)
T ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHHc--CCEEEEEEECCccc
Confidence 4577899999999999999999999765 78999999887654
No 433
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=89.24 E-value=0.56 Score=51.17 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=32.7
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
..|+..|.+++|+|||+.+..++...+.. +.+|+++=+
T Consensus 4 ~~Gli~v~~g~GkGKtt~a~g~a~ra~~~--g~~v~ivQF 41 (173)
T TIGR00708 4 ERGIIIVHTGNGKGKTTAAFGMALRALGH--GKKVGVIQF 41 (173)
T ss_pred cccEEEEECCCCCChHHHHHHHHHHHHHC--CCeEEEEEE
Confidence 45899999999999999999999888876 788888743
No 434
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=89.22 E-value=0.47 Score=61.44 Aligned_cols=51 Identities=18% Similarity=0.286 Sum_probs=33.6
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHH
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKI 884 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL 884 (1456)
+....++.||||||||+++-.++..+-.. .-.+++++..++..-..++..+
T Consensus 36 ~~~~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~n~~~~~~~~~~~v 86 (608)
T TIGR00764 36 QKRNVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYPNPEDPNMPRIVEV 86 (608)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEeCCCCCchHHHHHH
Confidence 45688899999999999998877655322 0155666666544444444433
No 435
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=89.19 E-value=0.47 Score=51.03 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=29.5
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHH
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQ 875 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~ 875 (1456)
+..|.|++|||||+++..++..|-.. +.++-++-|...
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l~~~--g~~V~~iK~~~~ 40 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPALSAR--GLRVAVIKHDHH 40 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEecCC
Confidence 57899999999999999999887654 556666655443
No 436
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=89.19 E-value=0.32 Score=56.09 Aligned_cols=27 Identities=41% Similarity=0.661 Sum_probs=23.0
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 832 IQPGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 832 l~~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
+.....++.||||||||-++.+|...|
T Consensus 62 maGravLlaGppgtGKTAlAlaisqEL 88 (456)
T KOG1942|consen 62 MAGRAVLLAGPPGTGKTALALAISQEL 88 (456)
T ss_pred ccCcEEEEecCCCCchhHHHHHHHHHh
Confidence 456788999999999999998887666
No 437
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=89.18 E-value=0.8 Score=59.84 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=48.7
Q ss_pred CCCCHHHHHHH---HhccCC-CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHHhc
Q 000509 818 VRFTPTQVGAI---ISGIQP-GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 818 v~Ln~sQ~eAI---~sal~~-gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
+..-+.|.+.+ ..++.. ...+|.+|.|||||.-....+..... ..+.+|+|+|.|+...++++++...+
T Consensus 14 ~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~-~~~~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 14 FEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAR-EEGKKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHH-HcCCcEEEECCCHHHHHHHHHhhcch
Confidence 34456787665 445544 45999999999999655443333222 23589999999999999999987643
No 438
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=89.18 E-value=0.53 Score=61.96 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=36.5
Q ss_pred HHHHHHh--ccC-CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHH
Q 000509 824 QVGAIIS--GIQ-PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQ 875 (1456)
Q Consensus 824 Q~eAI~s--al~-~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~ 875 (1456)
..+++.. ++. ..+++|.||||||||+++.+++...... +.+++.+..-+.
T Consensus 47 ~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t 99 (790)
T PRK09519 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHA 99 (790)
T ss_pred HHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccc
Confidence 4555543 453 4689999999999999999988877665 667766665443
No 439
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=89.17 E-value=0.41 Score=57.51 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=19.2
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
+-.|+.||||||||+++-.+...|
T Consensus 30 ~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 30 GGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHC
Confidence 569999999999998877655443
No 440
>PRK10865 protein disaggregation chaperone; Provisional
Probab=89.16 E-value=0.71 Score=62.16 Aligned_cols=37 Identities=27% Similarity=0.536 Sum_probs=26.6
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecC
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHS 873 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~S 873 (1456)
+..++.||||||||+++..++..++.. +..++.+..+
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~s 635 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMS 635 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhH
Confidence 467899999999999998888777643 3444434333
No 441
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=89.13 E-value=0.49 Score=55.31 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=30.4
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCH
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSN 874 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN 874 (1456)
+..|.|++||||||++..++..|... + +|.++=|..
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~--G-~V~~IKhd~ 38 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGR--G-RVGTVKHMD 38 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC--C-CEEEEEEcC
Confidence 56799999999999999999999876 5 787777644
No 442
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=89.10 E-value=0.4 Score=55.96 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=29.2
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEe
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT 871 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA 871 (1456)
+.=|.|+||.||||++-.++..|.+. +.||-|+|
T Consensus 53 viGITG~PGaGKSTli~~L~~~l~~~--G~rVaVlA 86 (323)
T COG1703 53 VIGITGVPGAGKSTLIEALGRELRER--GHRVAVLA 86 (323)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHHC--CcEEEEEE
Confidence 44589999999999999999999877 77777766
No 443
>PRK06761 hypothetical protein; Provisional
Probab=89.08 E-value=0.31 Score=57.08 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=22.2
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLY 859 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~ 859 (1456)
.+.+|.||||+||||++..+...+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~ 28 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILS 28 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999887774
No 444
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=89.08 E-value=0.22 Score=58.06 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=19.5
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHH
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILN 856 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~ 856 (1456)
+....++.||+|||||.++...+.
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHH
T ss_pred cCCcEEEECCCCCchhHHHHhhhc
Confidence 455789999999999988776553
No 445
>PRK13949 shikimate kinase; Provisional
Probab=89.08 E-value=0.31 Score=52.78 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+|.||||+|||+++..++..+
T Consensus 4 I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999988776555
No 446
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=89.06 E-value=0.32 Score=54.15 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNV 857 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~ 857 (1456)
+.+.+|.|+||+|||+++..++..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999998877765
No 447
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=89.03 E-value=0.54 Score=50.46 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=25.2
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEE
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLII 870 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIv 870 (1456)
-+.+|.|.||+||||++..+...|... +.++.++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~L 36 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLL 36 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEe
Confidence 356799999999999988888888765 4444443
No 448
>PRK00625 shikimate kinase; Provisional
Probab=89.00 E-value=0.34 Score=52.82 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L 858 (1456)
.++.|+||+|||+++..++..+
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999998877655
No 449
>PRK01184 hypothetical protein; Provisional
Probab=88.99 E-value=0.3 Score=53.08 Aligned_cols=17 Identities=41% Similarity=0.667 Sum_probs=14.3
Q ss_pred cEEEEcCCCCChHHHHH
Q 000509 836 LTMVVGPPGTGKTDTAV 852 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia 852 (1456)
+.+|.|||||||||++.
T Consensus 3 ~i~l~G~~GsGKsT~a~ 19 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK 19 (184)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56889999999999643
No 450
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.99 E-value=0.4 Score=58.10 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHhccC----CCcEEEEcCCCCChHHHHHHHHHHHHH
Q 000509 818 VRFTPTQVGAIISGIQ----PGLTMVVGPPGTGKTDTAVQILNVLYH 860 (1456)
Q Consensus 818 v~Ln~sQ~eAI~sal~----~gltLI~GPPGTGKT~tia~iI~~L~~ 860 (1456)
+-..+...+.+...+. ++..++.||||+|||+++-.++..+..
T Consensus 19 iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 19 VVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred cCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3345556666666653 346789999999999999888766653
No 451
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=88.96 E-value=0.41 Score=55.20 Aligned_cols=52 Identities=21% Similarity=0.401 Sum_probs=33.5
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEE-e-cCHHHHHHHHHHH
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLII-T-HSNQALNDLFEKI 884 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIv-A-~SN~AlD~L~ekL 884 (1456)
...-.+|.||||+|||+++..++..+-....+..+.++ . ....-+.++.+.+
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I 68 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV 68 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh
Confidence 34578999999999998887766655443222333333 2 2235677777776
No 452
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=88.94 E-value=0.27 Score=55.63 Aligned_cols=21 Identities=43% Similarity=0.798 Sum_probs=17.9
Q ss_pred CCcEEEEcCCCCChHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQI 854 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~i 854 (1456)
+...+|.|+||||||+++..+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~ 32 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYL 32 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhc
Confidence 567999999999999977644
No 453
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.93 E-value=0.41 Score=60.65 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=26.3
Q ss_pred HHHHHHhccC----CCcEEEEcCCCCChHHHHHHHHHHHH
Q 000509 824 QVGAIISGIQ----PGLTMVVGPPGTGKTDTAVQILNVLY 859 (1456)
Q Consensus 824 Q~eAI~sal~----~gltLI~GPPGTGKT~tia~iI~~L~ 859 (1456)
=.+++..++. +...|+.||||||||+++-.++..|.
T Consensus 24 v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 24 VVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred HHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3445555542 34568999999999999988887774
No 454
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=88.80 E-value=0.36 Score=59.57 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=20.2
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+-.++.||||||||+++..++..+
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Confidence 3568999999999999988776543
No 455
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=88.80 E-value=1.8 Score=54.96 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=49.3
Q ss_pred hccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHH
Q 000509 830 SGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIM 885 (1456)
Q Consensus 830 sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~ 885 (1456)
.......|+-.=|=-.|||-.++.||..++.++.+=+|..+||-.++.+-+++.+.
T Consensus 198 ~~FKQkaTVFLVPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~ 253 (668)
T PHA03372 198 NIFKQKATVFLVPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVE 253 (668)
T ss_pred HHhhccceEEEecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHH
Confidence 33556778878899999999999999999999999999999999999998888764
No 456
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=88.80 E-value=0.51 Score=50.65 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=28.5
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEE
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLII 870 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIv 870 (1456)
+++..+-+|+|||++++.++..+... +.|||++
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~--g~~vllv 34 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKL--GYKVGLL 34 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHc--CCcEEEE
Confidence 46778899999999999999988765 8899985
No 457
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=88.74 E-value=0.49 Score=53.89 Aligned_cols=38 Identities=26% Similarity=0.307 Sum_probs=32.3
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHH
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQ 875 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~ 875 (1456)
+.-|.|++|+|||+++..++..|-.. +.+|.++-|++.
T Consensus 3 vi~ivG~~gsGKTtl~~~l~~~L~~~--G~~V~viK~~~~ 40 (229)
T PRK14494 3 AIGVIGFKDSGKTTLIEKILKNLKER--GYRVATAKHTHH 40 (229)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHhC--CCeEEEEEeccc
Confidence 45789999999999999999998765 789999977654
No 458
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=88.71 E-value=0.32 Score=52.46 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=18.5
Q ss_pred CcEEEEcCCCCChHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILN 856 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~ 856 (1456)
.+.+|.||+|+|||+++..++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 3678999999999998776664
No 459
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=88.70 E-value=0.48 Score=58.47 Aligned_cols=34 Identities=32% Similarity=0.412 Sum_probs=21.5
Q ss_pred HHHHHHHH-hccCCCcEEEEcCCCCChHHHHHHHH
Q 000509 822 PTQVGAII-SGIQPGLTMVVGPPGTGKTDTAVQIL 855 (1456)
Q Consensus 822 ~sQ~eAI~-sal~~gltLI~GPPGTGKT~tia~iI 855 (1456)
+.=++|+. ++....-.++.||||||||+++..+.
T Consensus 185 ~~AKrAleiAAAGgHnLl~~GpPGtGKTmla~Rl~ 219 (490)
T COG0606 185 EQAKRALEIAAAGGHNLLLVGPPGTGKTMLASRLP 219 (490)
T ss_pred HHHHHHHHHHHhcCCcEEEecCCCCchHHhhhhhc
Confidence 33345543 22333336789999999998877553
No 460
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=88.58 E-value=0.58 Score=55.58 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=30.7
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
.+.++.|.-|+||||++++.+..+... +.|||+++-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~--G~rtLlvS~ 37 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARR--GKRTLLVST 37 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT--TS-EEEEES
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhC--CCCeeEeec
Confidence 467899999999999999999888876 899999973
No 461
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.55 E-value=0.39 Score=61.70 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=21.5
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLY 859 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~ 859 (1456)
...++.||||||||+++..++..|.
T Consensus 36 ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 36 HAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3568999999999999998887775
No 462
>PRK00698 tmk thymidylate kinase; Validated
Probab=88.54 E-value=0.64 Score=51.04 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEE
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLII 870 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIv 870 (1456)
+.+.+|.||+|+||||++..+...+-.. +..+.++
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~--~~~~~~~ 37 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ--GRDVVFT 37 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc--CCceeEe
Confidence 3478899999999999999888877543 3444444
No 463
>PRK14738 gmk guanylate kinase; Provisional
Probab=88.53 E-value=0.34 Score=54.03 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=18.5
Q ss_pred CCcEEEEcCCCCChHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQIL 855 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI 855 (1456)
+.+.+|.||+|+|||+++..+.
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~ 34 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMR 34 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHH
Confidence 4678899999999999887664
No 464
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.47 E-value=0.59 Score=57.86 Aligned_cols=70 Identities=21% Similarity=0.302 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHhccCCCcEEEEcCCCCChHHH-HHHHHHHHHHcCC----------CCcEEEEecCHHHHHHHHHHHHhc
Q 000509 819 RFTPTQVGAIISGIQPGLTMVVGPPGTGKTDT-AVQILNVLYHNCP----------SQRTLIITHSNQALNDLFEKIMQR 887 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~t-ia~iI~~L~~~~p----------~~rILIvA~SN~AlD~L~ekL~~l 887 (1456)
..||-|+-+|-.....+=.++.+|-|+|||.- +.-++..+++..+ ..++||+++|+.-++|++++-.+.
T Consensus 96 ~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~ 175 (482)
T KOG0335|consen 96 KPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKF 175 (482)
T ss_pred CCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhh
Confidence 45778999998888777679999999999974 4456777776643 368999999999999999998876
Q ss_pred C
Q 000509 888 D 888 (1456)
Q Consensus 888 ~ 888 (1456)
.
T Consensus 176 ~ 176 (482)
T KOG0335|consen 176 S 176 (482)
T ss_pred c
Confidence 3
No 465
>PRK09087 hypothetical protein; Validated
Probab=88.39 E-value=0.38 Score=54.58 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=19.0
Q ss_pred CCcEEEEcCCCCChHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILN 856 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~ 856 (1456)
.+..+|+||+|+|||+++..+..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~ 66 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWRE 66 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999886553
No 466
>PRK08356 hypothetical protein; Provisional
Probab=88.39 E-value=0.33 Score=53.56 Aligned_cols=20 Identities=35% Similarity=0.310 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCChHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQI 854 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~i 854 (1456)
-+.+|.||||+||||++..+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35778999999999988766
No 467
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=88.37 E-value=0.35 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.1
Q ss_pred cEEEEcCCCCChHHHHHHHHHHH
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L 858 (1456)
+..|.|+|||||||++..+...+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 35789999999999998877654
No 468
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.30 E-value=0.29 Score=60.39 Aligned_cols=22 Identities=50% Similarity=0.815 Sum_probs=17.7
Q ss_pred CCCcEEEEcCCCCChHHHHHHHH
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQIL 855 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI 855 (1456)
..| .|++||||||||.++-+++
T Consensus 337 PKG-VLLvGPPGTGKTlLARAvA 358 (752)
T KOG0734|consen 337 PKG-VLLVGPPGTGKTLLARAVA 358 (752)
T ss_pred CCc-eEEeCCCCCchhHHHHHhh
Confidence 344 6889999999998877665
No 469
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=88.27 E-value=0.4 Score=53.40 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=18.2
Q ss_pred CcEEEEcCCCCChHHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNV 857 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~ 857 (1456)
.+..|.||+|+||||++..+...
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999888766543
No 470
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=88.24 E-value=0.35 Score=60.96 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=19.2
Q ss_pred CcEEEEcCCCCChHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILN 856 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~ 856 (1456)
.-.|+.||||||||.++.++..
T Consensus 277 ~giLl~GpPGtGKT~lAkava~ 298 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVAL 298 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999988775
No 471
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=88.22 E-value=0.64 Score=51.90 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=27.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEE
Q 000509 837 TMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLII 870 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIv 870 (1456)
..|.|-.|+||||+++.++..|.+. ++||||+
T Consensus 3 iav~gKGGvGKTt~~~nLA~~la~~--G~rvLli 34 (212)
T cd02117 3 IAIYGKGGIGKSTTSQNLSAALAEM--GKKVLQV 34 (212)
T ss_pred EEEECCCcCcHHHHHHHHHHHHHHC--CCcEEEE
Confidence 3455999999999999999999876 8899988
No 472
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=88.19 E-value=0.73 Score=51.03 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=34.1
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 832 IQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 832 l~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
+..|..+|.|++|+|||+.+..++...+.. +.+|+++=+
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~--G~~V~ivQF 58 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGH--GKKVGVVQF 58 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHC--CCeEEEEEE
Confidence 467999999999999999999999888876 788888754
No 473
>PRK14737 gmk guanylate kinase; Provisional
Probab=88.17 E-value=0.39 Score=52.90 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.1
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNV 857 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~ 857 (1456)
+.+.+|.||+|+|||+++..++..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 567889999999999988877653
No 474
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=88.14 E-value=0.6 Score=55.45 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHhcc-----------CCCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 819 RFTPTQVGAIISGI-----------QPGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 819 ~Ln~sQ~eAI~sal-----------~~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+++.|++.+...+ +....+|.|+||||||+++..++..+
T Consensus 107 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 107 QASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred cCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 47788877765443 24577889999999999988776544
No 475
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=88.13 E-value=1.4 Score=56.49 Aligned_cols=72 Identities=22% Similarity=0.218 Sum_probs=58.8
Q ss_pred CCCCCCCHHHHHHHHhccCCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec----CHHHHHHHHHHHHhcC
Q 000509 815 QNSVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH----SNQALNDLFEKIMQRD 888 (1456)
Q Consensus 815 ~n~v~Ln~sQ~eAI~sal~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~----SN~AlD~L~ekL~~l~ 888 (1456)
.-++.|+|.|..||.+.-...-.||..-.-.|||-||-.+|+.-+++ ++||+.++| ||+--.++.+...+.|
T Consensus 125 ~YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--kQRVIYTSPIKALSNQKYREl~~EF~DVG 200 (1041)
T KOG0948|consen 125 TYPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--KQRVIYTSPIKALSNQKYRELLEEFKDVG 200 (1041)
T ss_pred CCCcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--cCeEEeeChhhhhcchhHHHHHHHhcccc
Confidence 34688999999999988877778999999999999999999998888 899999998 5555555555554443
No 476
>PHA02774 E1; Provisional
Probab=88.10 E-value=0.39 Score=60.82 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+-.+|.||||||||+++..++..|
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L 458 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFL 458 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999998776
No 477
>PRK14526 adenylate kinase; Provisional
Probab=88.10 E-value=0.4 Score=53.88 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=17.0
Q ss_pred EEEEcCCCCChHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNV 857 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~ 857 (1456)
.+|.|||||||||++..++..
T Consensus 3 i~l~G~pGsGKsT~a~~La~~ 23 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNE 23 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999988766543
No 478
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=88.10 E-value=0.31 Score=53.28 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=18.4
Q ss_pred CcEEEEcCCCCChHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILN 856 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~ 856 (1456)
.+.+|.||+|+||||++..+..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3678999999999999887643
No 479
>PRK00300 gmk guanylate kinase; Provisional
Probab=88.09 E-value=0.39 Score=53.03 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=19.4
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNV 857 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~ 857 (1456)
..+.+|.||+|||||+++..++..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357889999999999887766653
No 480
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=88.03 E-value=0.79 Score=49.37 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=30.9
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEe
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT 871 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA 871 (1456)
.|+..|.++||+|||+.+..++...+.. +.||+++=
T Consensus 2 ~G~i~vy~g~G~Gkt~~a~g~~~ra~~~--g~~v~~vQ 37 (159)
T cd00561 2 KGLIQVYTGNGKGKTTAALGLALRALGH--GYRVGVVQ 37 (159)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEE
Confidence 4788999999999999999999888766 88888853
No 481
>PF13479 AAA_24: AAA domain
Probab=87.97 E-value=0.42 Score=53.66 Aligned_cols=19 Identities=42% Similarity=0.850 Sum_probs=16.2
Q ss_pred cEEEEcCCCCChHHHHHHH
Q 000509 836 LTMVVGPPGTGKTDTAVQI 854 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~i 854 (1456)
-.+|.||||+|||+++..+
T Consensus 5 ~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL 23 (213)
T ss_pred EEEEECCCCCCHHHHHHhC
Confidence 3689999999999988755
No 482
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=87.94 E-value=0.46 Score=60.91 Aligned_cols=27 Identities=37% Similarity=0.577 Sum_probs=23.2
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHH
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVLY 859 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L~ 859 (1456)
..++.+.+||||+|||.++..|+..+=
T Consensus 349 kGpILcLVGPPGVGKTSLgkSIA~al~ 375 (782)
T COG0466 349 KGPILCLVGPPGVGKTSLGKSIAKALG 375 (782)
T ss_pred CCcEEEEECCCCCCchhHHHHHHHHhC
Confidence 457899999999999999998887663
No 483
>PRK13975 thymidylate kinase; Provisional
Probab=87.77 E-value=0.45 Score=52.05 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=20.2
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
-+.+|.||||+||||++..+...+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999988777665
No 484
>PRK15453 phosphoribulokinase; Provisional
Probab=87.77 E-value=0.71 Score=54.02 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=21.3
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+.+..|.|+||+||||++..+...+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688899999999999987776544
No 485
>PRK14529 adenylate kinase; Provisional
Probab=87.76 E-value=0.45 Score=54.02 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+|.||||+||||.+..++..+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~ 24 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKY 24 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999988777654
No 486
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=87.75 E-value=0.89 Score=55.89 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=22.0
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHH-HHHc
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNV-LYHN 861 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~-L~~~ 861 (1456)
+-=.+..||||||||+++.++..+ .+..
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~s 237 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILIS 237 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHc
Confidence 334678999999999999988766 4544
No 487
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=87.75 E-value=0.42 Score=58.89 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L 858 (1456)
.+-.++.||||||||+++-.++..+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhc
Confidence 3568999999999999988776544
No 488
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=87.70 E-value=0.43 Score=49.83 Aligned_cols=21 Identities=33% Similarity=0.688 Sum_probs=16.8
Q ss_pred cEEEEcCCCCChHHHHHHHHH
Q 000509 836 LTMVVGPPGTGKTDTAVQILN 856 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~ 856 (1456)
+.+|.||+|+|||+++..+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 468999999999987766553
No 489
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=87.65 E-value=0.8 Score=55.19 Aligned_cols=49 Identities=20% Similarity=0.409 Sum_probs=35.9
Q ss_pred CCHHHHHHHHhcc-CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEe
Q 000509 820 FTPTQVGAIISGI-QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT 871 (1456)
Q Consensus 820 Ln~sQ~eAI~sal-~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA 871 (1456)
+++.+.+.+..++ ..+..+|.||+|+|||+++..++..+ .+..+++++-
T Consensus 163 ~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i---~~~~riv~iE 212 (340)
T TIGR03819 163 FPPGVARLLRAIVAARLAFLISGGTGSGKTTLLSALLALV---APDERIVLVE 212 (340)
T ss_pred CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHccC---CCCCcEEEEC
Confidence 5677777777666 45788999999999999988766543 2456666543
No 490
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=87.61 E-value=0.61 Score=56.06 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=28.4
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEec
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITH 872 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~ 872 (1456)
+.++.|+||+||||++..+...|... .+.+|.+++.
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~-~g~~v~~~~~ 36 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRE-RGWAVAVITY 36 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhc-cCCeEEEEcc
Confidence 46889999999999999888887632 2667777764
No 491
>CHL00176 ftsH cell division protein; Validated
Probab=87.61 E-value=0.43 Score=61.99 Aligned_cols=23 Identities=48% Similarity=0.611 Sum_probs=19.4
Q ss_pred cEEEEcCCCCChHHHHHHHHHHH
Q 000509 836 LTMVVGPPGTGKTDTAVQILNVL 858 (1456)
Q Consensus 836 ltLI~GPPGTGKT~tia~iI~~L 858 (1456)
-.++.||||||||+++-.++..+
T Consensus 218 gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 218 GVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999998876543
No 492
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.60 E-value=0.51 Score=60.08 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=26.7
Q ss_pred HHHHHHHHhccC----CCcEEEEcCCCCChHHHHHHHHHHHH
Q 000509 822 PTQVGAIISGIQ----PGLTMVVGPPGTGKTDTAVQILNVLY 859 (1456)
Q Consensus 822 ~sQ~eAI~sal~----~gltLI~GPPGTGKT~tia~iI~~L~ 859 (1456)
+.-.+++..++. +...++.||||||||+++..++..|.
T Consensus 22 ~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 22 EHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444455555442 23458999999999999888887764
No 493
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=87.59 E-value=0.59 Score=60.59 Aligned_cols=51 Identities=25% Similarity=0.377 Sum_probs=31.3
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHH
Q 000509 833 QPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKI 884 (1456)
Q Consensus 833 ~~gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL 884 (1456)
+.+..+|.||||||||+++..+...+... .-..+++...+...-..++..+
T Consensus 49 ~~~~~l~~G~~G~GKttla~~l~~~l~~~-~~~~~~~~~np~~~~~~~~~~v 99 (637)
T PRK13765 49 QRRHVMMIGSPGTGKSMLAKAMAELLPKE-ELQDILVYPNPEDPNNPKIRTV 99 (637)
T ss_pred hCCeEEEECCCCCcHHHHHHHHHHHcChH-hHHHheEeeCCCcchHHHHHHH
Confidence 56789999999999999998877654322 0144444444333333333333
No 494
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.38 E-value=0.56 Score=60.65 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=21.6
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNVLY 859 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~L~ 859 (1456)
+...|+.||||||||+++-.++..|.
T Consensus 38 ~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 38 GHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578999999999999988887764
No 495
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=87.36 E-value=0.96 Score=48.38 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=26.9
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSN 874 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN 874 (1456)
++++|.|++|+|||+++..++.. .++.++.++.+..
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~----~~~~~~~~i~~~~ 36 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE----QHGRKIAVIENEF 36 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc----ccCCcEEEEecCC
Confidence 46899999999999998877654 2356776665543
No 496
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=87.35 E-value=0.16 Score=55.42 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=30.9
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHHHHHHHH
Q 000509 838 MVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIM 885 (1456)
Q Consensus 838 LI~GPPGTGKT~tia~iI~~L~~~~p~~rILIvA~SN~AlD~L~ekL~ 885 (1456)
+|.|+.|.|||+++-.+++.++... ..+|+||||+-.++..+++-+.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~-~~~I~vtAP~~~~~~~lf~~~~ 47 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG-KIRILVTAPSPENVQTLFEFAE 47 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS------EEEE-SS--S-HHHHHCC-
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc-CceEEEecCCHHHHHHHHHHHH
Confidence 5889999999999888887776552 2689999999999999988654
No 497
>PLN02674 adenylate kinase
Probab=87.35 E-value=0.45 Score=54.66 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=18.6
Q ss_pred CcEEEEcCCCCChHHHHHHHHHH
Q 000509 835 GLTMVVGPPGTGKTDTAVQILNV 857 (1456)
Q Consensus 835 gltLI~GPPGTGKT~tia~iI~~ 857 (1456)
.-.+|.||||+||||.+..++..
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~ 54 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDE 54 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999888766643
No 498
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=87.31 E-value=0.53 Score=51.35 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=19.7
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHH
Q 000509 834 PGLTMVVGPPGTGKTDTAVQILNV 857 (1456)
Q Consensus 834 ~gltLI~GPPGTGKT~tia~iI~~ 857 (1456)
..+.+|.||+|+||||++..+...
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999988866654
No 499
>PTZ00035 Rad51 protein; Provisional
Probab=87.22 E-value=0.69 Score=55.70 Aligned_cols=49 Identities=22% Similarity=0.265 Sum_probs=31.1
Q ss_pred HHHHHHh-cc-CCCcEEEEcCCCCChHHHHHHHHHHHHH----cCCCCcEEEEec
Q 000509 824 QVGAIIS-GI-QPGLTMVVGPPGTGKTDTAVQILNVLYH----NCPSQRTLIITH 872 (1456)
Q Consensus 824 Q~eAI~s-al-~~gltLI~GPPGTGKT~tia~iI~~L~~----~~p~~rILIvA~ 872 (1456)
..+.+.. ++ ...++.|.||||||||+++.+++..... ...+.+++.+.-
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdt 160 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDT 160 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEc
Confidence 4444433 34 3458999999999999999887654421 112456666554
No 500
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.20 E-value=0.38 Score=57.72 Aligned_cols=20 Identities=45% Similarity=0.720 Sum_probs=17.4
Q ss_pred EEEEcCCCCChHHHHHHHHH
Q 000509 837 TMVVGPPGTGKTDTAVQILN 856 (1456)
Q Consensus 837 tLI~GPPGTGKT~tia~iI~ 856 (1456)
.|..||||||||.++-.++.
T Consensus 387 ilfyGPPGTGKTm~ArelAr 406 (630)
T KOG0742|consen 387 ILFYGPPGTGKTMFARELAR 406 (630)
T ss_pred eeeeCCCCCCchHHHHHHHh
Confidence 68899999999999887763
Done!