Query 000510
Match_columns 1456
No_of_seqs 603 out of 3177
Neff 7.3
Searched_HMMs 46136
Date Mon Apr 1 17:18:38 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 6E-242 1E-246 2232.6 95.5 1337 4-1399 3-1404(1463)
2 PTZ00014 myosin-A; Provisional 100.0 1E-205 3E-210 1929.8 77.1 769 4-777 27-818 (821)
3 cd01384 MYSc_type_XI Myosin mo 100.0 3E-190 6E-195 1771.9 65.9 674 62-735 1-674 (674)
4 KOG0161 Myosin class II heavy 100.0 7E-186 2E-190 1813.1 87.4 773 5-784 25-824 (1930)
5 KOG0160 Myosin class V heavy c 100.0 2E-187 4E-192 1716.8 64.5 752 60-824 6-758 (862)
6 cd01380 MYSc_type_V Myosin mot 100.0 7E-186 1E-190 1742.5 63.2 664 63-731 1-691 (691)
7 cd01381 MYSc_type_VII Myosin m 100.0 2E-185 4E-190 1730.6 63.7 661 63-731 1-671 (671)
8 cd01377 MYSc_type_II Myosin mo 100.0 3E-185 7E-190 1737.1 65.1 667 60-731 3-693 (693)
9 cd01383 MYSc_type_VIII Myosin 100.0 5E-184 1E-188 1715.9 62.5 657 60-731 6-677 (677)
10 cd01378 MYSc_type_I Myosin mot 100.0 6E-184 1E-188 1720.3 63.3 662 63-731 1-674 (674)
11 cd01387 MYSc_type_XV Myosin mo 100.0 6E-183 1E-187 1708.9 63.7 661 62-731 1-677 (677)
12 cd01385 MYSc_type_IX Myosin mo 100.0 2E-182 4E-187 1708.9 65.9 664 62-733 7-690 (692)
13 cd01382 MYSc_type_VI Myosin mo 100.0 3E-182 7E-187 1712.0 64.7 664 61-731 3-716 (717)
14 KOG0163 Myosin class VI heavy 100.0 3E-180 7E-185 1549.1 75.3 789 8-813 2-842 (1259)
15 KOG0164 Myosin class I heavy c 100.0 1E-181 2E-186 1564.7 55.8 728 61-805 7-755 (1001)
16 cd01379 MYSc_type_III Myosin m 100.0 7E-180 2E-184 1672.4 63.7 639 63-731 1-653 (653)
17 smart00242 MYSc Myosin. Large 100.0 1E-178 3E-183 1680.8 65.0 668 60-732 4-677 (677)
18 KOG0162 Myosin class I heavy c 100.0 6E-178 1E-182 1531.0 50.0 695 60-765 16-725 (1106)
19 cd00124 MYSc Myosin motor doma 100.0 2E-176 4E-181 1667.3 64.3 662 63-731 1-679 (679)
20 cd01386 MYSc_type_XVIII Myosin 100.0 3E-176 6E-181 1658.6 62.3 660 64-731 2-767 (767)
21 PF00063 Myosin_head: Myosin h 100.0 4E-168 9E-173 1612.0 54.5 653 64-720 1-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 7E-116 2E-120 1107.3 28.2 753 60-826 59-1008(1062)
23 KOG1892 Actin filament-binding 100.0 2.5E-32 5.3E-37 324.9 22.8 303 1043-1423 548-865 (1629)
24 PF01843 DIL: DIL domain; Int 99.9 1.9E-27 4.1E-32 233.8 5.7 105 1274-1381 1-105 (105)
25 KOG0161 Myosin class II heavy 99.2 2.5E-08 5.5E-13 135.7 38.8 411 353-807 324-822 (1930)
26 KOG0160 Myosin class V heavy c 98.7 1.6E-06 3.5E-11 110.5 23.7 86 784-872 673-758 (862)
27 cd01363 Motor_domain Myosin an 98.6 3.6E-08 7.9E-13 107.6 6.9 90 132-230 8-98 (186)
28 PF02736 Myosin_N: Myosin N-te 98.3 1.4E-06 3.1E-11 70.5 6.8 41 10-50 1-41 (42)
29 KOG0520 Uncharacterized conser 98.3 1.2E-06 2.7E-11 111.4 9.1 120 734-853 808-935 (975)
30 KOG0520 Uncharacterized conser 98.0 1.8E-05 3.9E-10 101.2 10.3 117 760-880 811-939 (975)
31 COG5022 Myosin heavy chain [Cy 97.9 0.0014 3E-08 86.9 24.1 131 746-880 732-867 (1463)
32 KOG4229 Myosin VII, myosin IXB 97.0 0.0003 6.6E-09 92.6 2.3 268 605-874 644-1008(1062)
33 KOG0164 Myosin class I heavy c 96.9 0.0081 1.8E-07 73.9 13.4 59 758-826 695-753 (1001)
34 KOG2128 Ras GTPase-activating 96.8 0.083 1.8E-06 70.5 21.9 89 790-878 541-645 (1401)
35 KOG2128 Ras GTPase-activating 96.8 0.041 8.9E-07 73.2 18.9 167 742-911 513-709 (1401)
36 PF00612 IQ: IQ calmodulin-bin 96.5 0.0032 6.9E-08 43.1 3.3 19 785-803 2-20 (21)
37 PF00612 IQ: IQ calmodulin-bin 96.3 0.0045 9.7E-08 42.4 3.1 19 760-778 2-20 (21)
38 KOG0925 mRNA splicing factor A 96.2 0.0042 9E-08 73.7 4.2 56 102-166 24-79 (699)
39 KOG1029 Endocytic adaptor prot 96.0 1.9 4.1E-05 54.4 25.5 24 1294-1317 1008-1031(1118)
40 PTZ00014 myosin-A; Provisional 95.4 0.026 5.6E-07 74.5 7.2 40 786-825 779-818 (821)
41 KOG0163 Myosin class VI heavy 94.6 16 0.00035 46.4 27.0 39 284-329 360-398 (1259)
42 smart00015 IQ Short calmodulin 94.6 0.033 7.1E-07 40.3 2.8 21 784-804 3-23 (26)
43 PF09726 Macoilin: Transmembra 94.6 1.5 3.2E-05 57.3 19.6 40 938-977 542-581 (697)
44 PF04091 Sec15: Exocyst comple 94.1 0.27 5.9E-06 58.2 10.7 131 1244-1376 177-311 (311)
45 smart00015 IQ Short calmodulin 93.9 0.048 1E-06 39.4 2.5 20 759-778 3-22 (26)
46 PF13207 AAA_17: AAA domain; P 93.7 0.039 8.6E-07 55.4 2.4 23 151-173 1-23 (121)
47 PF12718 Tropomyosin_1: Tropom 93.7 5.4 0.00012 41.8 18.0 97 883-979 36-139 (143)
48 PF14662 CCDC155: Coiled-coil 93.6 4.4 9.5E-05 43.8 17.2 74 892-972 46-119 (193)
49 KOG0250 DNA repair protein RAD 93.5 37 0.00079 45.7 28.5 62 918-979 370-432 (1074)
50 PF08317 Spc7: Spc7 kinetochor 93.4 9.8 0.00021 45.5 22.4 46 926-971 215-260 (325)
51 PHA02562 46 endonuclease subun 93.1 35 0.00077 44.0 28.8 11 519-529 41-51 (562)
52 COG1579 Zn-ribbon protein, pos 93.1 4.7 0.0001 45.5 17.5 41 922-962 98-138 (239)
53 KOG1029 Endocytic adaptor prot 92.6 40 0.00087 43.3 29.1 11 1368-1378 1053-1063(1118)
54 PF13401 AAA_22: AAA domain; P 92.5 0.074 1.6E-06 54.1 2.4 29 147-175 2-30 (131)
55 PRK09039 hypothetical protein; 92.5 6.9 0.00015 47.1 19.2 89 892-980 77-176 (343)
56 PRK04863 mukB cell division pr 92.5 62 0.0013 46.4 30.8 21 959-979 446-466 (1486)
57 COG1579 Zn-ribbon protein, pos 92.3 10 0.00022 42.9 18.8 48 923-970 92-139 (239)
58 PF08317 Spc7: Spc7 kinetochor 92.3 6.5 0.00014 47.0 18.7 55 914-968 210-264 (325)
59 PF06785 UPF0242: Uncharacteri 92.2 4.1 8.8E-05 47.0 15.5 89 892-980 85-173 (401)
60 KOG0971 Microtubule-associated 92.2 9.2 0.0002 49.5 19.9 129 838-980 229-357 (1243)
61 KOG0933 Structural maintenance 92.1 18 0.00039 47.7 22.6 31 125-178 20-50 (1174)
62 PF13191 AAA_16: AAA ATPase do 92.1 0.082 1.8E-06 57.1 2.1 33 144-176 19-51 (185)
63 PF13238 AAA_18: AAA domain; P 91.8 0.1 2.2E-06 52.7 2.4 22 152-173 1-22 (129)
64 cd00009 AAA The AAA+ (ATPases 91.6 0.2 4.4E-06 51.0 4.4 29 146-174 16-44 (151)
65 cd02019 NK Nucleoside/nucleoti 91.6 0.13 2.9E-06 46.5 2.6 22 152-173 2-23 (69)
66 TIGR02322 phosphon_PhnN phosph 91.5 0.12 2.7E-06 55.9 2.7 25 150-174 2-26 (179)
67 PRK07196 fliI flagellum-specif 91.4 0.2 4.4E-06 61.4 4.8 42 132-173 138-179 (434)
68 COG0444 DppD ABC-type dipeptid 91.3 0.11 2.4E-06 60.4 2.2 28 147-174 29-56 (316)
69 TIGR00150 HI0065_YjeE ATPase, 91.3 0.27 5.8E-06 50.7 4.7 27 147-173 20-46 (133)
70 TIGR03015 pepcterm_ATPase puta 91.2 0.19 4.2E-06 58.0 4.2 28 147-174 41-68 (269)
71 PF12325 TMF_TATA_bd: TATA ele 91.1 8.4 0.00018 39.0 14.9 51 914-964 62-112 (120)
72 PF04437 RINT1_TIP1: RINT-1 / 90.9 3 6.4E-05 53.0 14.6 124 1244-1373 353-491 (494)
73 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.8 16 0.00035 37.7 17.3 37 945-981 95-131 (132)
74 PRK09270 nucleoside triphospha 90.7 0.35 7.6E-06 54.8 5.5 34 145-178 29-62 (229)
75 PF00004 AAA: ATPase family as 90.6 0.15 3.2E-06 51.7 2.2 23 152-174 1-23 (132)
76 PF14662 CCDC155: Coiled-coil 90.6 12 0.00025 40.7 16.2 57 922-978 83-139 (193)
77 PRK13833 conjugal transfer pro 90.6 0.24 5.3E-06 58.7 4.2 34 140-175 137-170 (323)
78 cd00820 PEPCK_HprK Phosphoenol 90.4 0.19 4.2E-06 49.6 2.6 23 148-170 14-36 (107)
79 PRK05480 uridine/cytidine kina 90.3 0.21 4.6E-06 55.6 3.3 27 147-173 4-30 (209)
80 cd01918 HprK_C HprK/P, the bif 90.3 0.2 4.2E-06 52.6 2.7 25 148-172 13-37 (149)
81 COG4026 Uncharacterized protei 90.3 5.3 0.00011 43.5 13.2 13 835-847 75-87 (290)
82 PRK06696 uridine kinase; Valid 90.2 0.32 6.8E-06 54.9 4.6 39 135-175 10-48 (223)
83 cd01131 PilT Pilus retraction 90.2 0.18 3.9E-06 55.8 2.6 25 151-175 3-27 (198)
84 PRK00300 gmk guanylate kinase; 90.2 0.18 3.9E-06 55.8 2.6 26 148-173 4-29 (205)
85 PRK08972 fliI flagellum-specif 90.1 0.44 9.5E-06 58.4 5.9 41 132-172 145-185 (444)
86 cd02023 UMPK Uridine monophosp 90.0 0.19 4.2E-06 55.4 2.5 22 152-173 2-23 (198)
87 PF10146 zf-C4H2: Zinc finger- 89.9 9.7 0.00021 43.1 15.8 66 914-979 33-98 (230)
88 cd01129 PulE-GspE PulE/GspE Th 89.9 0.32 6.8E-06 56.4 4.3 35 140-175 72-106 (264)
89 COG0194 Gmk Guanylate kinase [ 89.9 0.19 4.2E-06 54.0 2.3 25 149-173 4-28 (191)
90 PF01583 APS_kinase: Adenylyls 89.8 0.29 6.3E-06 51.8 3.6 29 149-177 2-30 (156)
91 PRK10884 SH3 domain-containing 89.8 2.5 5.5E-05 46.9 11.0 30 946-975 137-166 (206)
92 COG4026 Uncharacterized protei 89.8 8.9 0.00019 41.9 14.4 54 911-964 154-207 (290)
93 PF00485 PRK: Phosphoribulokin 89.8 0.19 4.2E-06 55.3 2.4 26 152-177 2-27 (194)
94 PF07888 CALCOCO1: Calcium bin 89.7 11 0.00024 47.4 17.4 75 887-964 162-236 (546)
95 PF13851 GAS: Growth-arrest sp 89.6 21 0.00046 39.6 18.0 99 883-981 56-155 (201)
96 PF08614 ATG16: Autophagy prot 89.6 3.2 6.9E-05 45.8 11.6 68 913-980 116-183 (194)
97 TIGR00235 udk uridine kinase. 89.2 0.28 6.1E-06 54.6 3.1 28 147-174 4-31 (207)
98 PRK11637 AmiB activator; Provi 89.2 35 0.00077 42.5 21.9 26 950-975 221-246 (428)
99 KOG1962 B-cell receptor-associ 89.2 28 0.00062 38.7 18.2 59 921-979 152-210 (216)
100 smart00382 AAA ATPases associa 89.1 0.23 5E-06 50.0 2.2 28 149-176 2-29 (148)
101 PRK11637 AmiB activator; Provi 89.0 4.5 9.7E-05 50.4 13.8 28 941-968 89-116 (428)
102 PRK12402 replication factor C 89.0 0.47 1E-05 56.8 5.1 56 117-174 6-61 (337)
103 PF09304 Cortex-I_coil: Cortex 88.9 14 0.00031 36.2 13.7 85 887-976 7-91 (107)
104 TIGR03420 DnaA_homol_Hda DnaA 88.9 0.55 1.2E-05 52.7 5.3 38 138-175 27-64 (226)
105 PF10473 CENP-F_leu_zip: Leuci 88.8 26 0.00056 36.5 16.6 30 932-961 71-100 (140)
106 PRK08472 fliI flagellum-specif 88.8 1.9 4.2E-05 53.1 10.1 41 133-173 141-181 (434)
107 TIGR02173 cyt_kin_arch cytidyl 88.7 0.25 5.5E-06 52.7 2.3 23 151-173 2-24 (171)
108 PRK08233 hypothetical protein; 88.7 0.23 5.1E-06 53.6 2.0 25 150-174 4-28 (182)
109 PTZ00301 uridine kinase; Provi 88.6 0.29 6.2E-06 54.7 2.6 23 152-174 6-28 (210)
110 PF00261 Tropomyosin: Tropomyo 88.6 22 0.00048 40.6 17.9 54 924-977 173-226 (237)
111 TIGR02782 TrbB_P P-type conjug 88.6 0.41 8.9E-06 56.5 4.1 27 149-175 132-158 (299)
112 cd02025 PanK Pantothenate kina 88.5 0.29 6.2E-06 55.1 2.6 24 152-175 2-25 (220)
113 PF10168 Nup88: Nuclear pore c 88.5 23 0.0005 46.8 20.1 21 621-641 421-441 (717)
114 cd02020 CMPK Cytidine monophos 88.5 0.3 6.5E-06 50.6 2.6 22 152-173 2-23 (147)
115 PRK06315 type III secretion sy 88.4 0.67 1.4E-05 57.2 5.8 36 138-173 153-188 (442)
116 COG1660 Predicted P-loop-conta 88.4 0.25 5.4E-06 55.5 2.0 19 151-169 3-21 (286)
117 cd02028 UMPK_like Uridine mono 88.4 0.31 6.7E-06 53.0 2.6 24 152-175 2-25 (179)
118 PF10211 Ax_dynein_light: Axon 88.3 26 0.00057 38.5 17.5 59 920-978 127-186 (189)
119 PRK07261 topology modulation p 88.3 0.32 6.9E-06 52.5 2.7 23 151-173 2-24 (171)
120 PHA02544 44 clamp loader, smal 88.2 0.47 1E-05 56.4 4.3 55 117-173 12-67 (316)
121 PF10146 zf-C4H2: Zinc finger- 88.1 20 0.00043 40.6 16.6 68 910-977 36-103 (230)
122 PRK06762 hypothetical protein; 87.9 0.34 7.3E-06 51.8 2.6 24 150-173 3-26 (166)
123 cd01130 VirB11-like_ATPase Typ 87.9 0.31 6.7E-06 53.3 2.3 26 149-174 25-50 (186)
124 PF10473 CENP-F_leu_zip: Leuci 87.9 34 0.00073 35.7 16.7 54 920-973 52-105 (140)
125 PRK05541 adenylylsulfate kinas 87.8 0.32 6.9E-06 52.6 2.4 29 147-175 5-33 (176)
126 PF03668 ATP_bind_2: P-loop AT 87.8 0.31 6.8E-06 56.1 2.3 20 150-169 2-21 (284)
127 PRK06547 hypothetical protein; 87.8 0.66 1.4E-05 50.2 4.7 29 145-173 11-39 (172)
128 PF05729 NACHT: NACHT domain 87.7 0.41 8.8E-06 50.5 3.1 27 151-177 2-28 (166)
129 PRK10884 SH3 domain-containing 87.6 7.8 0.00017 43.1 13.0 33 946-978 130-162 (206)
130 PF00910 RNA_helicase: RNA hel 87.6 0.35 7.6E-06 47.9 2.3 25 152-176 1-25 (107)
131 PRK08118 topology modulation p 87.6 0.38 8.3E-06 51.7 2.8 25 150-174 2-26 (167)
132 PF07724 AAA_2: AAA domain (Cd 87.6 0.41 8.9E-06 51.7 3.0 24 151-174 5-28 (171)
133 smart00787 Spc7 Spc7 kinetocho 87.5 70 0.0015 38.1 23.3 7 671-677 10-16 (312)
134 cd00227 CPT Chloramphenicol (C 87.4 0.43 9.3E-06 51.6 3.0 25 149-173 2-26 (175)
135 PRK00131 aroK shikimate kinase 87.2 0.45 9.8E-06 50.8 3.1 26 148-173 3-28 (175)
136 PF12846 AAA_10: AAA-like doma 87.1 0.43 9.4E-06 55.7 3.1 30 149-178 1-30 (304)
137 PRK07721 fliI flagellum-specif 87.0 1.9 4.1E-05 53.4 8.7 41 133-173 142-182 (438)
138 PRK13851 type IV secretion sys 87.0 0.45 9.7E-06 57.1 3.1 26 149-174 162-187 (344)
139 PRK14737 gmk guanylate kinase; 87.0 0.37 8E-06 52.8 2.2 25 149-173 4-28 (186)
140 PRK14961 DNA polymerase III su 87.0 0.73 1.6E-05 56.0 5.0 55 117-175 7-64 (363)
141 TIGR01420 pilT_fam pilus retra 86.9 0.38 8.3E-06 57.9 2.5 27 148-174 121-147 (343)
142 COG4172 ABC-type uncharacteriz 86.9 0.33 7.1E-06 57.7 1.8 29 149-177 36-64 (534)
143 PF12325 TMF_TATA_bd: TATA ele 86.9 21 0.00046 36.2 14.4 10 893-902 27-36 (120)
144 PRK04863 mukB cell division pr 86.7 1.8E+02 0.0039 42.0 34.6 39 939-977 440-478 (1486)
145 PRK13900 type IV secretion sys 86.7 0.59 1.3E-05 55.9 3.9 31 142-174 155-185 (332)
146 KOG0996 Structural maintenance 86.7 1.4E+02 0.0031 40.7 25.5 186 800-988 791-1010(1293)
147 PRK10078 ribose 1,5-bisphospho 86.6 0.36 7.8E-06 52.8 1.9 24 150-173 3-26 (186)
148 cd00071 GMPK Guanosine monopho 86.6 0.36 7.7E-06 50.1 1.8 22 152-173 2-23 (137)
149 PRK08084 DNA replication initi 86.5 0.94 2E-05 51.6 5.3 40 136-175 32-71 (235)
150 TIGR01313 therm_gnt_kin carboh 86.4 0.35 7.6E-06 51.4 1.7 23 152-174 1-23 (163)
151 cd02024 NRK1 Nicotinamide ribo 86.3 0.42 9.1E-06 52.3 2.2 22 152-173 2-23 (187)
152 TIGR02524 dot_icm_DotB Dot/Icm 86.3 0.44 9.6E-06 57.5 2.6 28 148-175 133-160 (358)
153 TIGR02928 orc1/cdc6 family rep 86.3 0.66 1.4E-05 56.2 4.2 35 141-175 32-66 (365)
154 KOG3684 Ca2+-activated K+ chan 86.2 33 0.00071 41.9 17.7 30 822-851 354-383 (489)
155 COG4608 AppF ABC-type oligopep 86.2 0.44 9.6E-06 54.4 2.4 32 147-178 37-68 (268)
156 PRK00889 adenylylsulfate kinas 86.2 0.69 1.5E-05 49.9 3.8 29 148-176 3-31 (175)
157 PHA02562 46 endonuclease subun 86.2 14 0.00031 47.6 16.5 15 152-166 30-44 (562)
158 KOG0976 Rho/Rac1-interacting s 86.2 1.1E+02 0.0023 39.8 22.4 7 1312-1318 954-960 (1265)
159 PF12718 Tropomyosin_1: Tropom 86.1 28 0.0006 36.6 15.3 15 891-905 30-44 (143)
160 KOG0250 DNA repair protein RAD 86.0 1.5E+02 0.0032 40.4 35.5 86 638-730 125-215 (1074)
161 TIGR02168 SMC_prok_B chromosom 85.9 1.8E+02 0.0038 41.1 29.1 182 800-981 192-377 (1179)
162 PRK14738 gmk guanylate kinase; 85.8 0.52 1.1E-05 52.5 2.7 26 147-172 11-36 (206)
163 PRK12704 phosphodiesterase; Pr 85.8 33 0.00072 43.7 18.9 15 1331-1345 415-429 (520)
164 cd01120 RecA-like_NTPases RecA 85.8 0.59 1.3E-05 48.9 3.0 25 152-176 2-26 (165)
165 PLN03025 replication factor C 85.7 0.89 1.9E-05 54.2 4.8 56 117-174 4-59 (319)
166 cd02027 APSK Adenosine 5'-phos 85.7 0.54 1.2E-05 49.5 2.6 24 152-175 2-25 (149)
167 KOG1962 B-cell receptor-associ 85.7 25 0.00055 39.1 15.3 47 915-961 160-206 (216)
168 KOG3478 Prefoldin subunit 6, K 85.6 32 0.00069 33.8 13.9 89 878-966 8-108 (120)
169 PF13245 AAA_19: Part of AAA d 85.6 0.9 1.9E-05 42.1 3.7 28 148-175 9-36 (76)
170 TIGR02525 plasmid_TraJ plasmid 85.5 0.53 1.1E-05 57.1 2.7 27 149-175 149-175 (372)
171 TIGR03263 guanyl_kin guanylate 85.5 0.41 8.9E-06 51.8 1.6 24 150-173 2-25 (180)
172 PF00437 T2SE: Type II/IV secr 85.4 0.62 1.3E-05 54.1 3.2 29 147-175 125-153 (270)
173 TIGR00554 panK_bact pantothena 85.4 1.1 2.5E-05 52.4 5.3 29 147-175 60-88 (290)
174 PRK10751 molybdopterin-guanine 85.3 0.59 1.3E-05 50.4 2.7 26 151-176 8-33 (173)
175 COG0572 Udk Uridine kinase [Nu 85.2 0.57 1.2E-05 52.0 2.5 23 152-174 11-33 (218)
176 PRK12704 phosphodiesterase; Pr 85.0 37 0.0008 43.3 18.7 10 1085-1094 286-295 (520)
177 smart00333 TUDOR Tudor domain. 85.0 2.8 6.1E-05 36.2 6.3 51 6-56 2-54 (57)
178 PRK03846 adenylylsulfate kinas 84.9 1 2.2E-05 49.8 4.4 32 145-176 20-51 (198)
179 cd00464 SK Shikimate kinase (S 84.8 0.58 1.3E-05 49.0 2.4 23 151-173 1-23 (154)
180 PRK12377 putative replication 84.7 1.3 2.8E-05 50.8 5.2 44 131-176 85-128 (248)
181 COG1102 Cmk Cytidylate kinase 84.6 0.7 1.5E-05 48.6 2.7 23 152-174 3-25 (179)
182 PF09755 DUF2046: Uncharacteri 84.5 91 0.002 36.6 24.8 62 918-979 140-202 (310)
183 PRK06217 hypothetical protein; 84.5 0.58 1.3E-05 51.0 2.3 24 151-174 3-26 (183)
184 PTZ00112 origin recognition co 84.5 1.5 3.2E-05 57.5 6.0 45 132-176 764-808 (1164)
185 PRK09039 hypothetical protein; 84.4 15 0.00033 44.2 14.3 18 1079-1096 235-252 (343)
186 PRK09099 type III secretion sy 84.4 2.1 4.5E-05 53.0 7.1 36 138-173 152-187 (441)
187 TIGR02546 III_secr_ATP type II 84.4 2.1 4.5E-05 53.0 7.2 38 136-173 132-169 (422)
188 KOG0980 Actin-binding protein 84.3 1.6E+02 0.0034 39.1 23.9 164 826-989 335-514 (980)
189 PRK00440 rfc replication facto 84.2 1.1 2.4E-05 53.1 4.6 55 118-174 9-63 (319)
190 PRK00411 cdc6 cell division co 84.2 0.96 2.1E-05 55.5 4.3 34 142-175 48-81 (394)
191 TIGR03319 YmdA_YtgF conserved 84.2 46 0.001 42.4 19.0 15 1331-1345 409-423 (514)
192 COG1125 OpuBA ABC-type proline 84.2 0.58 1.2E-05 52.7 2.0 25 151-175 29-53 (309)
193 PF13671 AAA_33: AAA domain; P 84.2 0.52 1.1E-05 48.7 1.7 23 152-174 2-24 (143)
194 PF03266 NTPase_1: NTPase; In 84.1 0.69 1.5E-05 49.8 2.6 24 152-175 2-25 (168)
195 COG1123 ATPase components of v 84.0 0.53 1.2E-05 58.8 1.9 29 148-176 34-62 (539)
196 PRK08903 DnaA regulatory inact 83.9 1.4 3E-05 49.7 5.1 29 147-175 40-68 (227)
197 PRK14956 DNA polymerase III su 83.9 1.2 2.5E-05 55.5 4.7 54 118-175 10-66 (484)
198 PF10481 CENP-F_N: Cenp-F N-te 83.8 40 0.00086 38.4 15.8 62 918-979 65-126 (307)
199 TIGR02902 spore_lonB ATP-depen 83.7 1.1 2.5E-05 57.1 4.7 30 144-173 81-110 (531)
200 PF02367 UPF0079: Uncharacteri 83.7 1.3 2.8E-05 45.1 4.1 27 147-173 13-39 (123)
201 PF06005 DUF904: Protein of un 83.7 8.1 0.00018 35.5 8.8 44 933-976 10-53 (72)
202 PRK14964 DNA polymerase III su 83.7 1.1 2.3E-05 56.3 4.3 57 118-177 5-63 (491)
203 KOG4643 Uncharacterized coiled 83.6 31 0.00066 45.7 16.8 40 944-983 519-558 (1195)
204 PRK03918 chromosome segregatio 83.6 24 0.00053 48.2 17.8 18 152-169 26-43 (880)
205 COG0529 CysC Adenylylsulfate k 83.5 1.4 3E-05 47.2 4.4 34 145-178 19-52 (197)
206 PF03205 MobB: Molybdopterin g 83.5 0.81 1.8E-05 47.7 2.7 27 151-177 2-28 (140)
207 PRK06002 fliI flagellum-specif 83.4 1 2.2E-05 55.5 3.9 33 6-39 46-78 (450)
208 KOG0995 Centromere-associated 83.4 54 0.0012 41.3 18.2 27 918-944 337-363 (581)
209 PRK13764 ATPase; Provisional 83.4 0.86 1.9E-05 58.3 3.4 27 149-175 257-283 (602)
210 cd02029 PRK_like Phosphoribulo 83.4 0.83 1.8E-05 52.4 2.9 24 152-175 2-25 (277)
211 PF15397 DUF4618: Domain of un 83.2 89 0.0019 36.0 18.7 35 945-979 190-224 (258)
212 cd02021 GntK Gluconate kinase 83.1 0.7 1.5E-05 48.3 2.1 22 152-173 2-23 (150)
213 PRK05342 clpX ATP-dependent pr 82.8 1.7 3.6E-05 53.6 5.5 63 111-173 59-132 (412)
214 PF08614 ATG16: Autophagy prot 82.7 9 0.00019 42.3 10.7 57 921-977 117-173 (194)
215 COG4172 ABC-type uncharacteriz 82.7 0.73 1.6E-05 54.8 2.2 30 147-176 311-340 (534)
216 TIGR02533 type_II_gspE general 82.7 1 2.2E-05 56.7 3.7 35 139-174 233-267 (486)
217 PRK07667 uridine kinase; Provi 82.7 0.92 2E-05 49.9 2.9 26 150-175 18-43 (193)
218 PRK06645 DNA polymerase III su 82.7 1.4 2.9E-05 55.7 4.7 56 118-176 13-70 (507)
219 PRK05057 aroK shikimate kinase 82.7 0.9 1.9E-05 49.1 2.8 25 149-173 4-28 (172)
220 COG2433 Uncharacterized conser 82.7 17 0.00037 45.7 13.6 25 946-970 479-503 (652)
221 TIGR01026 fliI_yscN ATPase Fli 82.7 2.3 5.1E-05 52.7 6.7 40 133-172 147-186 (440)
222 COG2884 FtsE Predicted ATPase 82.6 0.79 1.7E-05 49.5 2.2 25 148-172 27-51 (223)
223 PRK04182 cytidylate kinase; Pr 82.6 0.77 1.7E-05 49.4 2.2 23 151-173 2-24 (180)
224 COG0802 Predicted ATPase or ki 82.5 2 4.4E-05 44.8 5.1 30 146-175 22-51 (149)
225 PRK09825 idnK D-gluconate kina 82.5 0.94 2E-05 49.1 2.8 26 149-174 3-28 (176)
226 PF07475 Hpr_kinase_C: HPr Ser 82.4 0.82 1.8E-05 48.9 2.2 23 149-171 18-40 (171)
227 COG0563 Adk Adenylate kinase a 82.4 0.89 1.9E-05 49.4 2.6 23 151-173 2-24 (178)
228 COG1124 DppF ABC-type dipeptid 82.3 0.9 2E-05 51.0 2.6 29 147-175 31-59 (252)
229 COG3074 Uncharacterized protei 82.3 12 0.00027 33.3 8.9 37 941-977 25-61 (79)
230 TIGR01360 aden_kin_iso1 adenyl 82.3 0.9 2E-05 49.3 2.7 23 151-173 5-27 (188)
231 PRK04040 adenylate kinase; Pro 82.3 0.86 1.9E-05 50.0 2.5 25 150-174 3-27 (188)
232 PF05278 PEARLI-4: Arabidopsis 82.2 1E+02 0.0022 35.5 18.8 47 929-975 209-255 (269)
233 PF13555 AAA_29: P-loop contai 82.0 1.2 2.7E-05 39.5 2.8 22 151-172 25-46 (62)
234 PF05266 DUF724: Protein of un 82.0 67 0.0015 35.4 16.8 49 920-968 131-179 (190)
235 PHA00729 NTP-binding motif con 81.9 1.7 3.7E-05 48.8 4.7 29 146-174 14-42 (226)
236 TIGR03497 FliI_clade2 flagella 81.8 2.3 5E-05 52.3 6.2 36 138-173 126-161 (413)
237 cd03115 SRP The signal recogni 81.7 1.2 2.6E-05 47.8 3.4 27 151-177 2-28 (173)
238 PRK13894 conjugal transfer ATP 81.7 0.95 2.1E-05 53.8 2.7 27 149-175 148-174 (319)
239 PRK13342 recombination factor 81.7 1.5 3.2E-05 54.3 4.6 43 130-173 18-60 (413)
240 PRK00106 hypothetical protein; 81.6 58 0.0013 41.5 18.3 12 1332-1343 431-442 (535)
241 PF07728 AAA_5: AAA domain (dy 81.6 0.96 2.1E-05 46.7 2.4 22 152-173 2-23 (139)
242 PRK03918 chromosome segregatio 81.4 66 0.0014 44.1 20.6 14 1384-1397 824-837 (880)
243 PF04849 HAP1_N: HAP1 N-termin 81.4 30 0.00066 40.5 14.4 27 950-976 236-262 (306)
244 KOG0056 Heavy metal exporter H 81.3 1.2 2.6E-05 54.0 3.3 41 148-188 563-603 (790)
245 TIGR02169 SMC_prok_A chromosom 81.3 2.6E+02 0.0056 39.5 36.4 19 151-169 25-43 (1164)
246 PRK15453 phosphoribulokinase; 81.3 1.1 2.3E-05 52.0 2.8 25 149-173 5-29 (290)
247 PRK05896 DNA polymerase III su 81.2 2 4.3E-05 54.9 5.4 57 117-177 7-66 (605)
248 PF03215 Rad17: Rad17 cell cyc 81.2 1.3 2.9E-05 56.0 3.9 58 116-173 9-69 (519)
249 PF13851 GAS: Growth-arrest sp 81.2 93 0.002 34.6 17.8 69 910-978 59-130 (201)
250 PRK02224 chromosome segregatio 81.1 96 0.0021 42.5 22.0 137 839-978 166-302 (880)
251 cd02034 CooC The accessory pro 81.1 1.3 2.9E-05 44.5 3.2 26 152-177 2-27 (116)
252 PRK06761 hypothetical protein; 81.0 0.94 2E-05 52.7 2.3 26 150-175 4-29 (282)
253 TIGR02903 spore_lon_C ATP-depe 81.0 2 4.3E-05 55.9 5.5 36 141-176 167-202 (615)
254 PRK14732 coaE dephospho-CoA ki 80.9 1.1 2.5E-05 49.4 2.9 48 152-204 2-54 (196)
255 PRK08727 hypothetical protein; 80.9 1.6 3.5E-05 49.5 4.2 31 146-176 38-68 (233)
256 PRK14962 DNA polymerase III su 80.9 1.8 3.8E-05 54.4 4.8 54 118-175 6-62 (472)
257 PRK05416 glmZ(sRNA)-inactivati 80.8 0.96 2.1E-05 53.0 2.3 21 149-169 6-26 (288)
258 PRK06893 DNA replication initi 80.8 2.2 4.8E-05 48.3 5.2 40 136-176 27-66 (229)
259 COG2433 Uncharacterized conser 80.7 26 0.00056 44.2 14.3 9 696-704 302-310 (652)
260 PRK06936 type III secretion sy 80.6 1.5 3.2E-05 54.0 3.9 41 133-173 146-186 (439)
261 PF04111 APG6: Autophagy prote 80.6 26 0.00057 41.7 14.2 69 911-979 62-130 (314)
262 cd04508 TUDOR Tudor domains ar 80.6 3.9 8.5E-05 33.9 5.3 43 10-52 1-46 (48)
263 PRK14527 adenylate kinase; Pro 80.5 1.3 2.8E-05 48.6 3.1 28 147-174 4-31 (191)
264 TIGR02868 CydC thiol reductant 80.4 0.66 1.4E-05 59.3 0.9 29 147-175 359-387 (529)
265 PF03193 DUF258: Protein of un 80.4 1.2 2.6E-05 47.5 2.7 25 148-172 34-58 (161)
266 PF00308 Bac_DnaA: Bacterial d 80.4 2.2 4.8E-05 48.0 4.9 41 136-176 19-61 (219)
267 PRK15093 antimicrobial peptide 80.4 1.1 2.4E-05 53.7 2.7 27 147-173 31-57 (330)
268 KOG0976 Rho/Rac1-interacting s 80.4 2E+02 0.0043 37.6 22.2 10 764-773 124-133 (1265)
269 PRK10646 ADP-binding protein; 80.4 2.6 5.6E-05 44.6 5.1 25 149-173 28-52 (153)
270 COG2204 AtoC Response regulato 80.3 1.2 2.6E-05 55.0 3.0 62 147-220 162-233 (464)
271 cd03293 ABC_NrtD_SsuB_transpor 80.3 1.1 2.4E-05 50.3 2.5 27 147-173 28-54 (220)
272 PRK11308 dppF dipeptide transp 80.2 1.1 2.4E-05 53.6 2.7 27 147-173 39-65 (327)
273 PF10226 DUF2216: Uncharacteri 80.2 73 0.0016 34.6 15.5 40 944-983 104-143 (195)
274 PRK12608 transcription termina 80.2 1.4 3.1E-05 52.9 3.5 42 134-175 118-159 (380)
275 PRK14955 DNA polymerase III su 80.2 2.2 4.7E-05 52.6 5.2 56 118-175 8-64 (397)
276 COG1493 HprK Serine kinase of 80.1 1.2 2.6E-05 51.4 2.7 24 149-172 145-168 (308)
277 PRK14974 cell division protein 80.0 2.5 5.4E-05 50.6 5.4 31 147-177 138-168 (336)
278 TIGR00960 3a0501s02 Type II (G 79.9 1.2 2.5E-05 49.8 2.6 27 147-173 27-53 (216)
279 TIGR00176 mobB molybdopterin-g 79.9 1.4 3E-05 46.8 2.9 26 152-177 2-27 (155)
280 TIGR02673 FtsE cell division A 79.9 1.2 2.6E-05 49.7 2.6 27 147-173 26-52 (214)
281 COG2805 PilT Tfp pilus assembl 79.8 1.3 2.7E-05 51.2 2.7 75 87-175 70-151 (353)
282 PRK07960 fliI flagellum-specif 79.7 3.8 8.3E-05 50.6 7.0 42 132-173 158-199 (455)
283 TIGR02788 VirB11 P-type DNA tr 79.6 0.97 2.1E-05 53.7 1.9 26 148-173 143-168 (308)
284 PRK15079 oligopeptide ABC tran 79.6 1.2 2.6E-05 53.4 2.6 27 147-173 45-71 (331)
285 TIGR03499 FlhF flagellar biosy 79.5 1.6 3.4E-05 51.2 3.5 45 132-176 169-221 (282)
286 PRK08356 hypothetical protein; 79.5 1.1 2.3E-05 49.5 2.0 22 150-171 6-27 (195)
287 PRK15177 Vi polysaccharide exp 79.5 1.3 2.7E-05 49.7 2.6 27 147-173 11-37 (213)
288 TIGR01166 cbiO cobalt transpor 79.5 1.3 2.8E-05 48.5 2.6 26 147-172 16-41 (190)
289 PRK04220 2-phosphoglycerate ki 79.5 2 4.4E-05 50.3 4.4 27 147-173 90-116 (301)
290 PRK09111 DNA polymerase III su 79.4 1.5 3.2E-05 56.6 3.5 55 118-176 16-73 (598)
291 TIGR02881 spore_V_K stage V sp 79.4 1.4 3E-05 51.0 3.1 31 147-177 40-70 (261)
292 cd03225 ABC_cobalt_CbiO_domain 79.4 1.3 2.8E-05 49.3 2.7 27 147-173 25-51 (211)
293 PRK09473 oppD oligopeptide tra 79.4 1.1 2.5E-05 53.6 2.4 27 147-173 40-66 (330)
294 TIGR00064 ftsY signal recognit 79.3 2.9 6.2E-05 48.7 5.6 47 131-177 45-100 (272)
295 COG4619 ABC-type uncharacteriz 79.3 1.2 2.6E-05 47.2 2.1 26 148-173 28-53 (223)
296 cd03260 ABC_PstB_phosphate_tra 79.2 1.3 2.9E-05 49.9 2.7 27 147-173 24-50 (227)
297 PF00005 ABC_tran: ABC transpo 79.2 1.2 2.5E-05 45.8 2.1 26 148-173 10-35 (137)
298 PRK14969 DNA polymerase III su 79.2 2 4.3E-05 54.8 4.5 54 118-175 8-64 (527)
299 PF04111 APG6: Autophagy prote 79.1 19 0.00042 42.8 12.5 68 913-980 50-124 (314)
300 COG1123 ATPase components of v 79.1 1.2 2.7E-05 55.7 2.6 28 148-175 316-343 (539)
301 PF08826 DMPK_coil: DMPK coile 79.1 27 0.00059 31.0 10.1 38 930-967 21-58 (61)
302 cd03259 ABC_Carb_Solutes_like 79.1 1.3 2.9E-05 49.3 2.7 27 147-173 24-50 (213)
303 PF04665 Pox_A32: Poxvirus A32 79.1 1.3 2.8E-05 50.3 2.5 25 151-175 15-39 (241)
304 PF05911 DUF869: Plant protein 79.1 2.4E+02 0.0052 37.8 26.3 83 882-964 78-164 (769)
305 PRK05688 fliI flagellum-specif 79.1 3.3 7.1E-05 51.3 6.2 42 131-172 150-191 (451)
306 PRK14957 DNA polymerase III su 79.0 2.4 5.2E-05 54.0 5.1 55 117-175 7-64 (546)
307 PRK10416 signal recognition pa 79.0 1.7 3.8E-05 51.7 3.7 31 147-177 112-142 (318)
308 PRK14528 adenylate kinase; Pro 78.9 1.5 3.2E-05 48.1 2.9 24 150-173 2-25 (186)
309 KOG0977 Nuclear envelope prote 78.9 94 0.002 39.5 18.5 19 1102-1120 313-331 (546)
310 cd01124 KaiC KaiC is a circadi 78.9 1.5 3.2E-05 47.5 2.9 27 151-177 1-27 (187)
311 cd03255 ABC_MJ0796_Lo1CDE_FtsE 78.8 1.3 2.9E-05 49.4 2.6 27 147-173 28-54 (218)
312 TIGR03608 L_ocin_972_ABC putat 78.8 1.3 2.9E-05 48.9 2.6 26 148-173 23-48 (206)
313 PRK04195 replication factor C 78.7 1.8 3.8E-05 54.8 3.9 26 148-173 38-63 (482)
314 cd01983 Fer4_NifH The Fer4_Nif 78.7 1.7 3.8E-05 40.9 3.0 25 152-176 2-26 (99)
315 PF00158 Sigma54_activat: Sigm 78.6 1.2 2.7E-05 47.9 2.1 25 147-171 20-44 (168)
316 PRK11022 dppD dipeptide transp 78.6 1.3 2.8E-05 53.0 2.6 27 147-173 31-57 (326)
317 TIGR00455 apsK adenylylsulfate 78.6 2.2 4.8E-05 46.4 4.2 29 147-175 16-44 (184)
318 PRK09112 DNA polymerase III su 78.5 2.5 5.3E-05 51.1 4.8 40 136-175 31-71 (351)
319 cd03229 ABC_Class3 This class 78.5 1.5 3.2E-05 47.6 2.7 27 147-173 24-50 (178)
320 PF06428 Sec2p: GDP/GTP exchan 78.4 1.7 3.7E-05 42.4 2.8 24 882-905 8-31 (100)
321 cd03116 MobB Molybdenum is an 78.4 1.8 3.9E-05 46.2 3.3 28 150-177 2-29 (159)
322 cd03296 ABC_CysA_sulfate_impor 78.4 1.4 3.1E-05 50.1 2.7 27 147-173 26-52 (239)
323 PRK14963 DNA polymerase III su 78.4 2 4.3E-05 54.4 4.2 56 118-176 6-63 (504)
324 PRK08116 hypothetical protein; 78.4 3.2 6.8E-05 48.3 5.5 47 130-176 94-141 (268)
325 COG4088 Predicted nucleotide k 78.3 2.2 4.7E-05 46.7 3.8 25 152-176 4-28 (261)
326 smart00743 Agenet Tudor-like d 78.3 7.5 0.00016 34.2 6.7 51 5-55 1-56 (61)
327 PRK08154 anaerobic benzoate ca 78.3 2.2 4.9E-05 50.6 4.4 48 126-173 106-157 (309)
328 PF00625 Guanylate_kin: Guanyl 78.2 1.6 3.4E-05 47.6 2.8 26 149-174 2-27 (183)
329 COG2274 SunT ABC-type bacterio 78.2 0.93 2E-05 59.4 1.2 32 147-178 497-528 (709)
330 PRK06835 DNA replication prote 78.1 3.5 7.6E-05 49.3 5.9 29 148-176 182-210 (329)
331 PRK13768 GTPase; Provisional 78.1 1.6 3.5E-05 50.2 3.0 27 151-177 4-30 (253)
332 TIGR01359 UMP_CMP_kin_fam UMP- 78.0 1.4 3.1E-05 47.7 2.5 23 152-174 2-24 (183)
333 TIGR02880 cbbX_cfxQ probable R 78.0 1.6 3.4E-05 51.3 2.9 28 151-178 60-87 (284)
334 PRK00698 tmk thymidylate kinas 78.0 2 4.3E-05 47.4 3.6 28 149-176 3-30 (205)
335 cd03235 ABC_Metallic_Cations A 77.9 1.4 3E-05 49.1 2.4 27 147-173 23-49 (213)
336 KOG0804 Cytoplasmic Zn-finger 77.8 43 0.00092 40.8 14.3 27 915-941 384-410 (493)
337 TIGR00678 holB DNA polymerase 77.8 2.7 5.9E-05 45.9 4.6 36 140-175 4-40 (188)
338 PRK14959 DNA polymerase III su 77.7 2.4 5.2E-05 54.5 4.6 55 117-175 7-64 (624)
339 TIGR02449 conserved hypothetic 77.6 22 0.00049 31.9 9.2 22 928-949 15-36 (65)
340 cd03292 ABC_FtsE_transporter F 77.6 1.5 3.3E-05 48.7 2.6 27 147-173 25-51 (214)
341 cd03258 ABC_MetN_methionine_tr 77.6 1.5 3.4E-05 49.5 2.7 27 147-173 29-55 (233)
342 TIGR02640 gas_vesic_GvpN gas v 77.6 2.7 5.8E-05 48.7 4.7 41 130-173 5-45 (262)
343 cd02026 PRK Phosphoribulokinas 77.5 1.5 3.2E-05 51.2 2.5 22 152-173 2-23 (273)
344 PLN02796 D-glycerate 3-kinase 77.4 1.5 3.2E-05 52.3 2.5 24 151-174 102-125 (347)
345 PRK13341 recombination factor 77.2 2.6 5.7E-05 55.5 4.9 36 138-173 41-76 (725)
346 PRK11176 lipid transporter ATP 77.2 1.1 2.5E-05 57.9 1.6 29 147-175 367-395 (582)
347 TIGR03496 FliI_clade1 flagella 77.2 3.9 8.5E-05 50.3 6.1 37 137-173 125-161 (411)
348 PF10205 KLRAQ: Predicted coil 77.1 38 0.00081 33.2 11.3 63 917-979 9-71 (102)
349 PF14532 Sigma54_activ_2: Sigm 77.0 0.99 2.2E-05 46.7 0.8 26 147-172 19-44 (138)
350 TIGR03864 PQQ_ABC_ATP ABC tran 77.0 1.6 3.6E-05 49.5 2.7 27 147-173 25-51 (236)
351 PRK14531 adenylate kinase; Pro 77.0 1.8 3.9E-05 47.1 2.9 25 150-174 3-27 (183)
352 cd03223 ABCD_peroxisomal_ALDP 77.0 1.7 3.7E-05 46.5 2.7 27 147-173 25-51 (166)
353 TIGR03574 selen_PSTK L-seryl-t 77.0 1.6 3.5E-05 50.0 2.6 24 152-175 2-25 (249)
354 PRK05922 type III secretion sy 76.9 2.5 5.5E-05 52.0 4.4 42 132-173 140-181 (434)
355 PRK10436 hypothetical protein; 76.9 1.5 3.3E-05 54.6 2.6 34 140-174 210-243 (462)
356 PF13479 AAA_24: AAA domain 76.9 1.4 3.1E-05 49.3 2.1 23 147-169 1-23 (213)
357 PRK06921 hypothetical protein; 76.8 2.3 5E-05 49.4 3.8 28 148-175 116-143 (266)
358 cd03224 ABC_TM1139_LivF_branch 76.8 1.7 3.7E-05 48.7 2.7 27 147-173 24-50 (222)
359 cd03256 ABC_PhnC_transporter A 76.8 1.7 3.6E-05 49.5 2.6 27 147-173 25-51 (241)
360 PRK11124 artP arginine transpo 76.7 1.7 3.7E-05 49.5 2.7 26 147-172 26-51 (242)
361 PF05266 DUF724: Protein of un 76.6 47 0.001 36.6 13.5 23 956-978 153-175 (190)
362 PF10168 Nup88: Nuclear pore c 76.6 1E+02 0.0022 41.0 19.0 23 540-563 376-398 (717)
363 PRK00023 cmk cytidylate kinase 76.6 1.7 3.7E-05 49.1 2.6 26 149-174 4-29 (225)
364 TIGR02315 ABC_phnC phosphonate 76.6 1.7 3.7E-05 49.5 2.6 27 147-173 26-52 (243)
365 PRK05428 HPr kinase/phosphoryl 76.5 1.7 3.6E-05 51.1 2.5 24 149-172 146-169 (308)
366 cd03297 ABC_ModC_molybdenum_tr 76.4 1.7 3.7E-05 48.5 2.5 26 147-173 22-47 (214)
367 PRK03839 putative kinase; Prov 76.4 1.8 3.8E-05 47.0 2.6 23 151-173 2-24 (180)
368 KOG0977 Nuclear envelope prote 76.3 54 0.0012 41.5 15.5 42 939-980 146-187 (546)
369 PRK13729 conjugal transfer pil 76.3 8.9 0.00019 47.2 8.6 45 935-979 77-121 (475)
370 cd03266 ABC_NatA_sodium_export 76.2 1.8 3.9E-05 48.4 2.7 26 147-172 29-54 (218)
371 cd03268 ABC_BcrA_bacitracin_re 76.1 1.8 4E-05 48.0 2.7 27 147-173 24-50 (208)
372 PRK13539 cytochrome c biogenes 76.1 1.8 4E-05 48.1 2.7 26 147-172 26-51 (207)
373 PRK15422 septal ring assembly 76.1 22 0.00048 32.9 8.8 9 967-975 51-59 (79)
374 smart00072 GuKc Guanylate kina 76.0 1.7 3.6E-05 47.5 2.3 23 151-173 4-26 (184)
375 COG3883 Uncharacterized protei 76.0 19 0.00041 41.3 10.5 66 915-980 33-98 (265)
376 TIGR00972 3a0107s01c2 phosphat 76.0 1.8 3.9E-05 49.5 2.7 27 147-173 25-51 (247)
377 TIGR01184 ntrCD nitrate transp 75.9 1.8 4E-05 48.9 2.6 27 147-173 9-35 (230)
378 PRK05537 bifunctional sulfate 75.9 1.9 4E-05 55.5 2.9 44 130-175 375-418 (568)
379 PF01580 FtsK_SpoIIIE: FtsK/Sp 75.8 1.9 4E-05 47.9 2.6 26 151-176 40-65 (205)
380 cd03265 ABC_DrrA DrrA is the A 75.8 1.9 4.1E-05 48.4 2.7 25 148-172 25-49 (220)
381 PRK10908 cell division protein 75.8 1.9 4.1E-05 48.5 2.7 27 147-173 26-52 (222)
382 cd03226 ABC_cobalt_CbiO_domain 75.7 1.8 4E-05 47.9 2.5 27 147-173 24-50 (205)
383 cd03219 ABC_Mj1267_LivG_branch 75.7 1.8 3.8E-05 49.1 2.4 27 147-173 24-50 (236)
384 cd03269 ABC_putative_ATPase Th 75.7 1.9 4.1E-05 47.9 2.7 25 148-172 25-49 (210)
385 cd03230 ABC_DR_subfamily_A Thi 75.7 1.9 4.2E-05 46.4 2.6 27 147-173 24-50 (173)
386 PRK14970 DNA polymerase III su 75.6 4.1 8.9E-05 49.6 5.8 57 117-175 8-65 (367)
387 PF15070 GOLGA2L5: Putative go 75.6 79 0.0017 41.2 17.2 17 952-968 164-180 (617)
388 TIGR03410 urea_trans_UrtE urea 75.6 1.9 4E-05 48.8 2.6 27 147-173 24-50 (230)
389 PRK05201 hslU ATP-dependent pr 75.5 4.6 0.0001 49.4 5.9 61 113-173 5-74 (443)
390 PF10498 IFT57: Intra-flagella 75.5 1.4E+02 0.003 36.3 18.3 9 840-848 216-224 (359)
391 PF06785 UPF0242: Uncharacteri 75.5 1.7E+02 0.0038 34.4 20.6 16 833-848 68-83 (401)
392 cd03270 ABC_UvrA_I The excisio 75.5 1.9 4.1E-05 48.7 2.6 24 147-170 19-42 (226)
393 TIGR01978 sufC FeS assembly AT 75.4 1.9 4.1E-05 49.1 2.6 26 147-172 24-49 (243)
394 PHA02530 pseT polynucleotide k 75.4 1.8 3.8E-05 51.1 2.4 24 150-173 3-26 (300)
395 PRK10584 putative ABC transpor 75.4 1.9 4.2E-05 48.5 2.7 27 147-173 34-60 (228)
396 cd03262 ABC_HisP_GlnQ_permease 75.4 2 4.2E-05 47.9 2.7 27 147-173 24-50 (213)
397 PRK01156 chromosome segregatio 75.4 54 0.0012 45.0 17.0 20 151-170 25-44 (895)
398 PRK11248 tauB taurine transpor 75.3 1.9 4.2E-05 49.6 2.7 27 147-173 25-51 (255)
399 PF12774 AAA_6: Hydrolytic ATP 75.3 2.6 5.7E-05 47.8 3.6 41 134-174 16-57 (231)
400 PRK05563 DNA polymerase III su 75.3 3.3 7.1E-05 53.3 4.9 56 118-176 8-65 (559)
401 PRK13541 cytochrome c biogenes 75.3 2 4.3E-05 47.3 2.7 26 148-173 25-50 (195)
402 PF01695 IstB_IS21: IstB-like 75.2 3.4 7.5E-05 44.9 4.4 29 147-175 45-73 (178)
403 PRK02496 adk adenylate kinase; 75.2 2 4.3E-05 46.7 2.6 22 152-173 4-25 (184)
404 KOG1970 Checkpoint RAD17-RFC c 75.2 3.3 7.1E-05 51.4 4.5 60 114-173 70-134 (634)
405 PF10498 IFT57: Intra-flagella 75.2 1.2E+02 0.0026 36.9 17.7 23 913-935 266-288 (359)
406 cd03245 ABCC_bacteriocin_expor 75.2 2 4.3E-05 48.2 2.6 26 147-172 28-53 (220)
407 TIGR00382 clpX endopeptidase C 75.1 4.2 9.1E-05 50.0 5.6 25 149-173 116-140 (413)
408 PRK14950 DNA polymerase III su 75.1 3.5 7.7E-05 53.4 5.3 55 118-175 8-64 (585)
409 PRK06305 DNA polymerase III su 75.1 3.9 8.4E-05 51.2 5.4 57 118-176 9-66 (451)
410 cd03222 ABC_RNaseL_inhibitor T 75.0 2 4.2E-05 46.8 2.5 28 147-174 23-50 (177)
411 cd03238 ABC_UvrA The excision 75.0 2.1 4.5E-05 46.5 2.7 24 147-170 19-42 (176)
412 PF07889 DUF1664: Protein of u 74.9 78 0.0017 32.4 13.5 30 939-968 87-116 (126)
413 COG3074 Uncharacterized protei 74.9 59 0.0013 29.3 10.7 6 893-898 8-13 (79)
414 PRK05439 pantothenate kinase; 74.9 4.1 8.8E-05 48.2 5.2 31 146-176 83-113 (311)
415 cd03294 ABC_Pro_Gly_Bertaine T 74.8 2 4.3E-05 49.9 2.7 27 147-173 48-74 (269)
416 PF13173 AAA_14: AAA domain 74.8 2.4 5.2E-05 43.2 2.9 26 149-174 2-27 (128)
417 PRK11629 lolD lipoprotein tran 74.7 2 4.4E-05 48.6 2.7 27 147-173 33-59 (233)
418 TIGR02211 LolD_lipo_ex lipopro 74.7 2.1 4.5E-05 48.0 2.7 26 147-172 29-54 (221)
419 TIGR00679 hpr-ser Hpr(Ser) kin 74.7 2.1 4.5E-05 50.1 2.7 25 148-172 145-169 (304)
420 PRK06620 hypothetical protein; 74.7 3.5 7.6E-05 46.2 4.4 20 150-169 45-64 (214)
421 TIGR02338 gimC_beta prefoldin, 74.7 84 0.0018 31.3 13.8 23 947-969 80-102 (110)
422 cd03237 ABC_RNaseL_inhibitor_d 74.6 2.1 4.5E-05 49.1 2.7 26 148-173 24-49 (246)
423 COG5185 HEC1 Protein involved 74.6 94 0.002 38.0 15.9 29 917-945 372-400 (622)
424 PRK03731 aroL shikimate kinase 74.6 2.2 4.9E-05 45.7 2.8 25 150-174 3-27 (171)
425 cd01672 TMPK Thymidine monopho 74.6 2.4 5.1E-05 46.3 3.0 24 152-175 3-26 (200)
426 KOG0995 Centromere-associated 74.5 2.5E+02 0.0054 35.7 26.8 54 924-977 429-482 (581)
427 PF09726 Macoilin: Transmembra 74.5 3E+02 0.0065 36.6 30.5 31 950-980 624-654 (697)
428 PRK13538 cytochrome c biogenes 74.5 2.1 4.6E-05 47.4 2.7 26 148-173 26-51 (204)
429 PLN02348 phosphoribulokinase 74.5 3.3 7.1E-05 50.2 4.3 28 147-174 47-74 (395)
430 PRK13695 putative NTPase; Prov 74.5 2.2 4.7E-05 46.0 2.7 24 152-175 3-26 (174)
431 COG1126 GlnQ ABC-type polar am 74.4 2.2 4.7E-05 47.2 2.5 21 148-168 27-47 (240)
432 cd03267 ABC_NatA_like Similar 74.4 2.1 4.5E-05 48.7 2.6 26 147-172 45-70 (236)
433 cd03301 ABC_MalK_N The N-termi 74.4 2.2 4.7E-05 47.6 2.7 27 147-173 24-50 (213)
434 PRK13540 cytochrome c biogenes 74.2 2.2 4.8E-05 47.1 2.7 27 147-173 25-51 (200)
435 PRK06526 transposase; Provisio 74.2 2.5 5.3E-05 48.8 3.1 29 148-176 97-125 (254)
436 PRK07429 phosphoribulokinase; 74.2 2 4.3E-05 51.3 2.4 26 148-173 7-32 (327)
437 TIGR02770 nickel_nikD nickel i 74.2 2.1 4.6E-05 48.4 2.6 27 147-173 10-36 (230)
438 PRK13645 cbiO cobalt transport 74.1 2 4.4E-05 50.4 2.5 27 147-173 35-61 (289)
439 PRK09087 hypothetical protein; 74.1 3.5 7.7E-05 46.6 4.3 24 148-171 43-66 (226)
440 PRK14242 phosphate transporter 74.1 2.1 4.6E-05 49.1 2.6 27 147-173 30-56 (253)
441 TIGR02858 spore_III_AA stage I 74.0 2.2 4.8E-05 49.5 2.7 40 136-175 98-137 (270)
442 PRK10247 putative ABC transpor 74.0 2.2 4.8E-05 48.1 2.7 26 147-172 31-56 (225)
443 cd03218 ABC_YhbG The ABC trans 74.0 2.2 4.8E-05 48.2 2.7 27 147-173 24-50 (232)
444 PRK08927 fliI flagellum-specif 74.0 5 0.00011 49.6 5.9 43 132-174 141-183 (442)
445 KOG0804 Cytoplasmic Zn-finger 73.9 68 0.0015 39.1 14.7 9 429-437 76-84 (493)
446 PRK14247 phosphate ABC transpo 73.9 2.2 4.7E-05 48.9 2.6 27 147-173 27-53 (250)
447 PRK11247 ssuB aliphatic sulfon 73.9 2.2 4.7E-05 49.3 2.6 26 148-173 37-62 (257)
448 cd03261 ABC_Org_Solvent_Resist 73.9 2.2 4.8E-05 48.3 2.7 27 147-173 24-50 (235)
449 COG1618 Predicted nucleotide k 73.7 2.4 5.3E-05 44.7 2.6 27 150-176 6-32 (179)
450 KOG0922 DEAH-box RNA helicase 73.7 4.4 9.6E-05 51.3 5.3 107 146-258 63-181 (674)
451 PRK14958 DNA polymerase III su 73.7 4.2 9.1E-05 51.6 5.3 56 117-176 7-65 (509)
452 cd03298 ABC_ThiQ_thiamine_tran 73.7 2.3 4.9E-05 47.3 2.6 27 147-173 22-48 (211)
453 PRK12323 DNA polymerase III su 73.6 3.3 7.2E-05 53.2 4.3 55 118-175 8-64 (700)
454 COG2804 PulE Type II secretory 73.6 2.2 4.8E-05 52.8 2.7 36 139-175 249-284 (500)
455 PRK14251 phosphate ABC transpo 73.6 2.3 4.9E-05 48.8 2.7 27 147-173 28-54 (251)
456 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 73.6 2.2 4.8E-05 48.0 2.6 26 148-173 47-72 (224)
457 PRK13729 conjugal transfer pil 73.6 14 0.0003 45.6 9.3 53 912-964 68-120 (475)
458 PRK14960 DNA polymerase III su 73.5 3.5 7.5E-05 53.1 4.4 54 118-175 7-63 (702)
459 PF10267 Tmemb_cc2: Predicted 73.5 1.1E+02 0.0023 37.6 16.6 104 877-980 214-323 (395)
460 cd03234 ABCG_White The White s 73.5 2.4 5.1E-05 47.8 2.8 27 147-173 31-57 (226)
461 PF08826 DMPK_coil: DMPK coile 73.5 37 0.0008 30.2 9.4 34 920-953 25-58 (61)
462 cd03247 ABCC_cytochrome_bd The 73.5 2.4 5.1E-05 45.9 2.6 27 147-173 26-52 (178)
463 PRK11174 cysteine/glutathione 73.5 1.6 3.5E-05 56.6 1.6 27 147-173 374-400 (588)
464 TIGR00017 cmk cytidylate kinas 73.5 2.4 5.2E-05 47.6 2.8 24 151-174 4-27 (217)
465 PLN02318 phosphoribulokinase/u 73.3 3.5 7.5E-05 52.4 4.3 40 133-172 48-88 (656)
466 PF01637 Arch_ATPase: Archaeal 73.3 2.1 4.6E-05 47.7 2.3 32 142-173 13-44 (234)
467 cd03250 ABCC_MRP_domain1 Domai 73.2 2.4 5.2E-05 46.9 2.7 27 147-173 29-55 (204)
468 cd03236 ABC_RNaseL_inhibitor_d 73.2 1.7 3.6E-05 50.2 1.5 29 147-175 24-52 (255)
469 TIGR02538 type_IV_pilB type IV 73.2 2.1 4.6E-05 55.1 2.5 26 149-174 316-341 (564)
470 cd03257 ABC_NikE_OppD_transpor 73.2 2.3 5E-05 47.8 2.5 27 147-173 29-55 (228)
471 PRK14248 phosphate ABC transpo 73.1 2.3 5.1E-05 49.3 2.7 27 147-173 45-71 (268)
472 PF15066 CAGE1: Cancer-associa 73.1 73 0.0016 39.0 14.6 16 398-413 50-65 (527)
473 PRK13657 cyclic beta-1,2-gluca 73.1 1.6 3.6E-05 56.6 1.5 29 147-175 359-387 (588)
474 PRK07133 DNA polymerase III su 73.1 3.9 8.5E-05 53.4 4.9 58 117-176 9-67 (725)
475 cd03214 ABC_Iron-Siderophores_ 73.0 2.5 5.4E-05 45.9 2.7 27 147-173 23-49 (180)
476 KOG2891 Surface glycoprotein [ 73.0 1.6E+02 0.0034 33.5 16.3 17 665-681 122-138 (445)
477 CHL00081 chlI Mg-protoporyphyr 73.0 3.7 8E-05 49.4 4.3 30 147-176 36-65 (350)
478 PRK14238 phosphate transporter 73.0 2.3 5E-05 49.4 2.6 27 148-174 49-75 (271)
479 cd01394 radB RadB. The archaea 72.9 3.2 6.9E-05 46.4 3.6 29 148-176 18-46 (218)
480 TIGR00152 dephospho-CoA kinase 72.9 3.3 7.2E-05 45.2 3.7 47 152-202 2-53 (188)
481 cd03232 ABC_PDR_domain2 The pl 72.9 2.4 5.2E-05 46.6 2.5 25 147-171 31-55 (192)
482 TIGR00602 rad24 checkpoint pro 72.8 3.8 8.2E-05 53.1 4.6 58 116-173 74-134 (637)
483 PF00769 ERM: Ezrin/radixin/mo 72.8 88 0.0019 35.9 15.2 58 921-978 55-112 (246)
484 PRK15422 septal ring assembly 72.8 67 0.0014 29.9 11.0 8 892-899 7-14 (79)
485 PRK05642 DNA replication initi 72.8 5.9 0.00013 45.1 5.8 26 150-175 46-71 (234)
486 KOG0612 Rho-associated, coiled 72.8 75 0.0016 43.3 16.0 37 543-579 212-253 (1317)
487 cd03215 ABC_Carb_Monos_II This 72.8 2.4 5.3E-05 46.1 2.5 27 147-173 24-50 (182)
488 TIGR03878 thermo_KaiC_2 KaiC d 72.8 3.1 6.7E-05 48.1 3.5 28 148-175 35-62 (259)
489 PRK10419 nikE nickel transport 72.7 2.4 5.2E-05 49.2 2.6 24 147-170 36-59 (268)
490 KOG3684 Ca2+-activated K+ chan 72.7 1.6E+02 0.0035 36.3 17.5 132 756-939 336-467 (489)
491 PF10267 Tmemb_cc2: Predicted 72.7 1E+02 0.0022 37.8 16.2 106 874-982 218-329 (395)
492 KOG4427 E3 ubiquitin protein l 72.7 10 0.00022 48.3 7.8 52 762-821 10-61 (1096)
493 cd03254 ABCC_Glucan_exporter_l 72.6 2.5 5.4E-05 47.7 2.6 24 147-170 27-50 (229)
494 TIGR01193 bacteriocin_ABC ABC- 72.6 1.7 3.6E-05 57.9 1.4 43 147-189 498-540 (708)
495 TIGR00635 ruvB Holliday juncti 72.6 4.7 0.0001 47.6 5.1 43 131-173 11-54 (305)
496 COG5185 HEC1 Protein involved 72.6 84 0.0018 38.4 14.9 102 880-981 255-356 (622)
497 cd03263 ABC_subfamily_A The AB 72.5 2.5 5.5E-05 47.3 2.7 24 147-170 26-49 (220)
498 PRK01156 chromosome segregatio 72.5 74 0.0016 43.7 17.2 111 871-981 618-728 (895)
499 PF15456 Uds1: Up-regulated Du 72.5 63 0.0014 33.1 12.3 76 882-957 22-111 (124)
500 PRK14530 adenylate kinase; Pro 72.5 2.5 5.4E-05 47.4 2.6 22 152-173 6-27 (215)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=6.1e-242 Score=2232.59 Aligned_cols=1337 Identities=34% Similarity=0.529 Sum_probs=1048.1
Q ss_pred CcccccCcEEEEeCCCCCeEeEEEEEEc--CCeEEEE--eCCCcEEEEecccccC--CCCCCCCCCCCcccCCCCCChhh
Q 000510 4 PDNIIVGSHVWVEDPVLAWINGEVMWIN--GQEVHVN--CTNGKKVVTSVSKVFP--EDTEAPAGGVDDMTKLSYLHEPG 77 (1456)
Q Consensus 4 ~~~~~~g~~vwv~~~~~~w~~~~v~~~~--~~~~~~~--~~~g~~~~~~~~~~~~--~~~~~~~~~~~Dl~~L~~l~e~~ 77 (1456)
..++.+|..||+|+.+.+|+.|.|.+.+ ++.++.. ..+|+.+.++...+.. .++ +..+++||||.|+|||||+
T Consensus 3 ~~~~~~g~~~w~p~~e~~Wi~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-P~~~~vdDLt~LSyLNEps 81 (1463)
T COG5022 3 TTNAEVGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDGESVSVKKKVLGNDRIKL-PKFDGVDDLTELSYLNEPA 81 (1463)
T ss_pred ccccccCceeeeeccccceeeeeechhhhhccccccchhhccCcccceeehhcccccccC-ccccCchhhhhhhccCcHH
Confidence 3478999999999999999999999743 3443322 2455555555443321 122 1468999999999999999
Q ss_pred HHHHHHHHhccCccccccCceEEEeCCCcCCCCCCCHHHHHHhhcCCcCCCCchhhhHHHHHHHHHHhcCCCeEEEecCC
Q 000510 78 VLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGE 157 (1456)
Q Consensus 78 vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGE 157 (1456)
|||||++||..++||||+|.||||||||+.|| ||+.++|+.|.+++..+++|||||||++||++|...++|||||||||
T Consensus 82 Vl~nL~kRY~n~~IYTYSGlvLIAvNPy~~L~-iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISGE 160 (1463)
T COG5022 82 VLHNLEKRYNNGQIYTYSGLVLIAVNPYRDLG-IYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGE 160 (1463)
T ss_pred HHHHHHHHhhcCceeEEeeeEEEEecCcccCC-CccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEecC
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHhcCCCCCCcccHHHHHhhcchHHHhccCccccCCCCCCccccEEEEEecCCCccceeeeeee
Q 000510 158 SGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTY 237 (1456)
Q Consensus 158 SGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l~f~~~g~i~ga~i~ty 237 (1456)
|||||||+||+||+|||++++.++...+.||++||++||||||||||||+||||||||||||+|.||.+|.|+||+|+||
T Consensus 161 SGAGKTe~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~Y 240 (1463)
T COG5022 161 SGAGKTENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETY 240 (1463)
T ss_pred CCCCchHHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhhh
Confidence 99999999999999999999877656678999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccCCCCCcceeehhcccC-CHHHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHhhhhhcccChHHH
Q 000510 238 LLERSRVCQISDPERNYHCFYLLCAA-PHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLATRRAMDIVGISDQEQ 316 (1456)
Q Consensus 238 LLEksRvv~q~~~ErnfHiFYql~~~-~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f~~~~~al~~lg~~~~~~ 316 (1456)
||||||||+|+.+|||||||||||++ +++.++.+++..|.+|+||++|+|..++|+||+++|..|+.||.++||+.++|
T Consensus 241 LLEKSRVV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq 320 (1463)
T COG5022 241 LLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQ 320 (1463)
T ss_pred hhhhhhhccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHHH
Confidence 99999999999999999999999995 55556667779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCceeccCCccccccccCccchHHHHHHHHhcCCCHHHHHHhhheeEEEeCCceEeccCChhhHHHh
Q 000510 317 EAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVAS 396 (1456)
Q Consensus 317 ~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~l~~~~a~~~ 396 (1456)
..||++||||||||||+|..+++ +++...+.. .++.||.|||||++.|.+||++|.|.+++|.|.+|+|.+||..+
T Consensus 321 ~~IF~iLAaILhiGNIef~~~r~-g~a~~~~~~---~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~i 396 (1463)
T COG5022 321 DQIFKILAAILHIGNIEFKEDRN-GAAIFSDNS---VLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAI 396 (1463)
T ss_pred HHHHHHHHHHHhhcceeeeeccc-chhhcCCch---HHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHH
Confidence 99999999999999999998764 444554443 59999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEeccccCCCCCCCChhHHHhhhhhhHHHhhHhhhhhhhhHHHhhh
Q 000510 397 RDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTR 476 (1456)
Q Consensus 397 rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNEkLq~~f~~~~f~~eq~ey~~ 476 (1456)
||||||+||++||+|||++||.+|...+...+|||||||||||+|+.|||||||||||||||||+||+|||++|||||.+
T Consensus 397 rdslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~k 476 (1463)
T COG5022 397 RDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVK 476 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998777789999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccccChHHHHHHhhc-CCCccccccchhccCCCCchHHHHHHHHHHhc--CCCCccCCCCCCCCcEEEeccce
Q 000510 477 EEINWSYIEFIDNQDVLDLIEK-KPGGIIALLDEACMFPKSTHETFSQKLCQTFA--KNNRFSKPKLSRTDFTILHYAGE 553 (1456)
Q Consensus 477 Egi~~~~i~~~dn~~~ldlie~-~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~--~~~~f~~p~~~~~~F~I~Hyag~ 553 (1456)
|||+|++|+|.|||+||||||+ .|.|||++|||||++|.|||++|.+||++.+. +++.|.+||+..+.|+|+||||+
T Consensus 477 E~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgD 556 (1463)
T COG5022 477 EGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGD 556 (1463)
T ss_pred hcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeeccc
Confidence 9999999999999999999997 35699999999999999999999999999986 56789999999999999999999
Q ss_pred eeecccchhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCcCCCCCCcchhHHHHHHHHHHHHHHhccCCeEEeecCC
Q 000510 554 VTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKP 633 (1456)
Q Consensus 554 V~Y~~~~fleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~Lm~~l~~t~~h~IrCIkP 633 (1456)
|+|+++||++||||++++++++|+.+|+|+||+.||+...+ ..+.++++|+|+.||+||++||.+|++|+|||||||||
T Consensus 557 VeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~-~~~K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCIkP 635 (1463)
T COG5022 557 VEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEEN-IESKGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKP 635 (1463)
T ss_pred ceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhhh-ccccCCCCcHHHHHHHHHHHHHHHHHhcCCceeEeeCC
Confidence 99999999999999999999999999999999999995333 33447889999999999999999999999999999999
Q ss_pred CCCCCCCCCchhhHHHHhhccChhHHHHHHhhCCCCccChhhHHhhhhccccCcccC-----CCchHHHHHHHHHHhCCC
Q 000510 634 NNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEG-----NYDDQVACQMILDKKGLK 708 (1456)
Q Consensus 634 N~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~-----~~~~~~~~~~ll~~~~~~ 708 (1456)
|+.|+|+.||+.+|++|||||||||+|||+|+|||+||+|++|+.||++|.|...+. ..|.+.+|+.||..+.++
T Consensus 636 N~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id 715 (1463)
T COG5022 636 NEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILEELVID 715 (1463)
T ss_pred CcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999999974322 246799999999998876
Q ss_pred --CeeeccceeecccchhhHHHHHHHhhhhhhHHHHhhhhhchHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000510 709 --GYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIARKEFILLRNAAVILQSFLRGEMARKLYEQLRREAA 786 (1456)
Q Consensus 709 --~~qiGkTkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~l~Rk~~~~~r~aai~IQa~~Rg~laRk~~~~~r~~~A 786 (1456)
.||+|+||||||+|+++.||++|+..++.+++.||++|||++.|++|....+.+..+|...+|+..|++...-....+
T Consensus 716 ~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1463)
T COG5022 716 SSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRL 795 (1463)
T ss_pred hhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHh
Confidence 599999999999999999999999999999999999999999999999999999999999999999988777666789
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhH
Q 000510 787 ALKIQTNFRAYVAQRSYLTVRSSAMILQ-TGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQCGW 865 (1456)
Q Consensus 787 Ai~IQ~~~R~~~aRk~~~~~r~a~i~iQ-s~~Rg~laRr~~~~~r~~~aai~IQ~~~R~~~~R~~y~~~~~a~i~iQ~~~ 865 (1456)
++++|+.||....|+.|......++.+| ..+|....+.........++++.+|+.||.+..+++|..+.+..+.+|+.+
T Consensus 796 ~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~ 875 (1463)
T COG5022 796 FIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQ 875 (1463)
T ss_pred HHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHH
Confidence 9999999999999999999999999999 666666666656667778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------------HH
Q 000510 866 RCRVARRELRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRGLLQSQTQTADEAKQAFT-------------VS 932 (1456)
Q Consensus 866 R~~~aRrel~~Lk~ea~~~~~l~~~~~kLe~kv~eL~~rl~~ek~~~~~le~l~~~~~ele~~l~-------------~~ 932 (1456)
|...|++++..++.+.+++..+...+..|+.++.++...++.... .+.+-..+....++..+. ..
T Consensus 876 r~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~~s~~~--~~~~~k~e~~a~lk~~l~~~d~~~~~~~~~~~~ 953 (1463)
T COG5022 876 RVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLI--ENLEFKTELIARLKKLLNNIDLEEGPSIEYVKL 953 (1463)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhccchhhh--hhhHHHHHHHHHHHHHhhcccccchhHHHHHhh
Confidence 999999999999999999999999999999999888775543211 111100011111111111 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcCchHHHhhc---CCccc-c-ccccccCC
Q 000510 933 EAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVL---RQQALAISPTAKALAA---RPKTT-I-IQRTPVNG 1004 (1456)
Q Consensus 933 e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L---~~q~~~l~e~~~~l~~---~~~~~-~-~~~~~~~~ 1004 (1456)
. ++.++......+++...++...++..+....+....+..+ .+.....+.....+++ .++.. . ........
T Consensus 954 ~-~~~~l~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~el~~~~~~l~~~~~~~~~l~~~~~~lk~~~~~~~~l~~~~ 1032 (1463)
T COG5022 954 P-ELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSAS 1032 (1463)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhh
Confidence 1 1112222222222222222222222222111111111111 1111111110000000 00000 0 00000000
Q ss_pred cccccccc-cccCCCCC-CCC-----CCCCCCCcccc---c--cch----HHhhhcHHHHHHhhh-ccCCCCCC-ccchH
Q 000510 1005 NILNGEMK-KVHDSVLT-VPG-----VRDVEPEHRPQ---K--TLN----EKQQENQDLLIKCIS-QDLGFSGG-KPVAA 1066 (1456)
Q Consensus 1005 ~~~~~~~~-~~~~~~~~-~~~-----~~~~~~~~~~~---~--~~~----e~~~~~~d~L~~~i~-~~~g~~~~-kp~pA 1066 (1456)
+....+.. .....|.. ... ......+.... + .+. ....+....+++.+. .++...+. -+.||
T Consensus 1033 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~r~~~~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~~~~ 1112 (1463)
T COG5022 1033 KIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPA 1112 (1463)
T ss_pred hhhccchhhhhccCcccchhhhhhHHHHHhhhhHhhhhhcCcccchhHHHHHHHHhhhhhhhhhccchhhhhcccccchh
Confidence 00000000 00000000 000 00000000000 0 000 011122222333333 22233221 12255
Q ss_pred HHH-HHHHhcccc-cccchHHHHHHHHHHHHhhhhcc---CCcccchhhhHHHHHHHHHHHHhhhhcCCCCCC-cccccC
Q 000510 1067 CLI-YKCLLHWRS-FEVERTSIFDRIIQTISGAIEVH---DNNDRLSYWLSNASTLLLLLQRTLKASGAASLT-PQRRRS 1140 (1456)
Q Consensus 1067 ~il-~~cl~~~~~-~~~e~~~ll~~ii~~I~~~v~~~---~d~~~lafWLSN~~~LL~~lq~~l~~~~~~~~~-~~~~~~ 1140 (1456)
..+ +....+|+. ...+...++...+..+..+.+.- +-.-...||.+|...+++.--- ... +.+...
T Consensus 1113 ~~~~~~~~~~~k~~l~~~~~~~~~~~~~~le~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 1184 (1463)
T COG5022 1113 NVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPF--------AALSEKRLYQ 1184 (1463)
T ss_pred hHHHHHHHHhhccchHHhhhhHHHHHHhhccchhccccchhccccccccccccccCCCCCch--------hhcchhhhhH
Confidence 554 555557776 55555666666666666555422 2234578999999988741100 000 000000
Q ss_pred CcccccccccccccCCCCCCCccccccccccccchhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 000510 1141 TSSSLLGRMSQGLRASPQSAGIPFLNSRILSGLDDLRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQ 1220 (1456)
Q Consensus 1141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~p~~~fkq~L~~l~~~iy~~l~~~l~~~L~p~L~~~i~ 1220 (1456)
...+. ....+..+++. ..+..|..+..++|..|.... .+.+++.....
T Consensus 1185 ------------------~~~~d---~~~~~s~s~v~---------~l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~~ 1232 (1463)
T COG5022 1185 ------------------SALYD---EKSKLSSSEVN---------DLKNELIALFSKIFSGWPRGD--KLKKLISEGWV 1232 (1463)
T ss_pred ------------------hhhhc---ccccccHHHHH---------HHHHHHHHHHHhccccchhhh--hhhhhhhhccc
Confidence 00000 00000111222 236678888888888888765 22223221111
Q ss_pred CC--CCCccccccCCCcchhHhhHhHHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHhhhccCCCc
Q 000510 1221 AP--RTSRASLIKGRSQANAVAQQALIAHWQSIVKSLNNYLKIMRANYVPSFLIRKVFTQIFSFINVQLFNSLLLRRECC 1298 (1456)
Q Consensus 1221 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~l~~L~~~~V~~~l~~Qlf~QlF~fIna~lFN~Ll~r~~~c 1298 (1456)
.. .+..+++ ..++..+..+...+.+.++.+++++.++++.+.+.+.+....++++.-++|+.+||.|..|+...
T Consensus 1233 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ll~~~n~i~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~ 1308 (1463)
T COG5022 1233 PTEYSTSLKGF----NNLNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSL 1308 (1463)
T ss_pred hhhhccccccc----cchhhcccCcccCcHHHHHHHHHHHHHHHHHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCcc
Confidence 00 0111111 01122233344566788999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHhcHHHHHHHHhhcCCccccchHHHhHHHHHHHHHHhhcCCCcCCHHHHHhhhCCCCCHHHHHHHHhcCccC
Q 000510 1299 SFSNGEFVKAGLAELEQWCHDSTEEFAGSAWDELRHIRQAVGFLVIHQKPKKTLKEITNDLCPVLSIQQLYRISTMYWDD 1378 (1456)
Q Consensus 1299 s~s~G~qIr~nls~LE~W~~~~~~~~~~~~~~~L~~i~QA~~lLq~~kk~~~~~~~i~~~~C~~Ls~~Ql~kIL~~Y~~d 1378 (1456)
.|+.|.++.+|.+.+++||++++ ...+..+|+++.||++.+++.+++..+++++. +.|.+|+|.|+.+|+.+|.+.
T Consensus 1309 ~~k~~~~~~~n~~~~~~w~~~~~---i~~~~~~l~~l~q~~k~~~~~~~dl~~~~~~~-~~~~~l~~~~~~~L~~~y~~~ 1384 (1463)
T COG5022 1309 RWKSATEVNYNSEELDDWCREFE---ISDVDEELEELIQAVKVLQLLKDDLNKLDELL-DACYSLNPAEIQNLKSRYDPA 1384 (1463)
T ss_pred chhhcccccccchhhhHHHHhhc---ccchHHHHHHHHhhhhhhhhhhCCHHHHHHHH-HHHHhcCHHHHHHHHHhhhhh
Confidence 99999999999999999999988 34455799999999999999988888888887 999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhc
Q 000510 1379 KYGTHSVSSEVISSMRVMMMD 1399 (1456)
Q Consensus 1379 ~~e~~~vs~~vi~~~~~~~~~ 1399 (1456)
++++ ++|.++...|......
T Consensus 1385 ~~e~-~l~ke~~~~~~a~~~~ 1404 (1463)
T COG5022 1385 DKEN-NLPKEILKKIEALLIK 1404 (1463)
T ss_pred cccC-CChHHHHHHHhhhhhH
Confidence 9985 9999999776665553
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=1.3e-205 Score=1929.82 Aligned_cols=769 Identities=34% Similarity=0.552 Sum_probs=714.9
Q ss_pred CcccccCcEEEE-------eCCCCCeEeEEEE-EEcCCeEEEEe---CCCcEEEEecccccCCCCCCCCCCCCcccCCCC
Q 000510 4 PDNIIVGSHVWV-------EDPVLAWINGEVM-WINGQEVHVNC---TNGKKVVTSVSKVFPEDTEAPAGGVDDMTKLSY 72 (1456)
Q Consensus 4 ~~~~~~g~~vwv-------~~~~~~w~~~~v~-~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~ 72 (1456)
..++.+|+.||+ +||+++|+.|+|+ +.+|+.++|.. ++|++++++.+++++.|++..+.++|||+.|+|
T Consensus 27 ~~~~~~g~~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~n~~~~~~~~~Dl~~L~~ 106 (821)
T PTZ00014 27 SGNVLKGFYVWTDKAPAVKEDPDLMFAKCLVLPGSTGEKLTLKQIDPPTNSTFEVKPEHAFNANSQIDPMTYGDIGLLPH 106 (821)
T ss_pred ccccccCCeEEeeCCCCCCCCchhheeeEEEEEecCCCEEEEEEecCCCCcEEEeeHHHhhhcCCCCCcCCcchhhhCCC
Confidence 346779999998 6789999999999 78899998874 579999999999999998776789999999999
Q ss_pred CChhhHHHHHHHHhccCccccccCceEEEeCCCcCCCCCCCHHHHHHhhcC-CcCCCCchhhhHHHHHHHHHHhcCCCeE
Q 000510 73 LHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGA-AFGELSPHVFAVGDAAYRAMINEGKSNS 151 (1456)
Q Consensus 73 l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~-~~~~~~PHifaiA~~Ay~~m~~~~~~Qs 151 (1456)
||||+|||||+.||..+.||||+|++|||||||+.+| +|++++|+.|++. ..+++||||||||+.||+.|...++|||
T Consensus 107 lnE~~vL~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~Qs 185 (821)
T PTZ00014 107 TNIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLG-NTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQT 185 (821)
T ss_pred CCHHHHHHHHHHHHcCCCCeeeECCEEEEECCCCCCC-CCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCce
Confidence 9999999999999999999999999999999999998 9999999999985 5789999999999999999999999999
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhcCCCCCCcccHHHHHhhcchHHHhccCccccCCCCCCccccEEEEEecCCCccce
Q 000510 152 ILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISG 231 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l~f~~~g~i~g 231 (1456)
|||||||||||||+||+||+|||.+++.. ...+|+++|+++||||||||||||+|||||||||||++|+||.+|.|+|
T Consensus 186 IiiSGESGAGKTe~tK~im~yla~~~~~~--~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~G 263 (821)
T PTZ00014 186 IIVSGESGAGKTEATKQIMRYFASSKSGN--MDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRY 263 (821)
T ss_pred EEEEcCCCCCchHHHHHHHHHHHHhccCC--CcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEee
Confidence 99999999999999999999999986532 2357999999999999999999999999999999999999999999999
Q ss_pred eeeeeeccCCccccccCCCCCcceeehhccc-CCHHHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHHHHhhhhhcc
Q 000510 232 AAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLATRRAMDIVG 310 (1456)
Q Consensus 232 a~i~tyLLEksRvv~q~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f~~~~~al~~lg 310 (1456)
|+|.||||||||||+|++||||||||||||+ ++++++++|+|.++.+|+||++ +|+.++|+||+++|.+|+.||++||
T Consensus 264 a~I~~YLLEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~-~~~~~~~~dD~~~f~~~~~A~~~lg 342 (821)
T PTZ00014 264 GSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINP-KCLDVPGIDDVKDFEEVMESFDSMG 342 (821)
T ss_pred EEEEEEeccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCC-CCccCCCCchHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999 7889999999999999999995 5889999999999999999999999
Q ss_pred cChHHHHHHHHHHHHHHhhcCceeccCCc---cccccccCccchHHHHHHHHhcCCCHHHHHHhhheeEEEeCCceEecc
Q 000510 311 ISDQEQEAIFRVVAAILHLGNIDFAKGKE---IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPEEVITRT 387 (1456)
Q Consensus 311 ~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~ 387 (1456)
|+++++.+||+|||||||||||+|.+... .|++.+.+ .+...++.||+|||||+++|.++||+|++.++++.++++
T Consensus 343 ~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~-~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~ 421 (821)
T PTZ00014 343 LSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISD-ESLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGP 421 (821)
T ss_pred CCHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccC-CCHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecC
Confidence 99999999999999999999999986432 24455543 234579999999999999999999999999999999999
Q ss_pred CChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEeccccCCCCCCCChhHHHhhhhhhHHHhhHhhhhh
Q 000510 388 LDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVF 467 (1456)
Q Consensus 388 l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNEkLq~~f~~~~f 467 (1456)
++++||..+||||||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||||||||||||||+||+|||
T Consensus 422 ~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF 501 (821)
T PTZ00014 422 WSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVF 501 (821)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998766788999999999999999999999999999999999999999
Q ss_pred hhhHHHhhhcCCccccccccChHHHHHHhhcCCCccccccchhccCCCCchHHHHHHHHHHhcCCCCccCCCC-CCCCcE
Q 000510 468 KMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPKL-SRTDFT 546 (1456)
Q Consensus 468 ~~eq~ey~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~f~~p~~-~~~~F~ 546 (1456)
+.||+||.+|||+|++|+|.||++|||||++||.|||++|||||++|+|||++|++||++++++|++|.+|+. ....|+
T Consensus 502 ~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~ 581 (821)
T PTZ00014 502 ERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFV 581 (821)
T ss_pred HHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 467999
Q ss_pred EEeccceeeecccchhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCcCCCCCCcchhHHHHHHHHHHHHHHhccCCe
Q 000510 547 ILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNATAPH 626 (1456)
Q Consensus 547 I~Hyag~V~Y~~~~fleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~Lm~~l~~t~~h 626 (1456)
|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+......++..+.+||+++|+.||+.||++|++|+||
T Consensus 582 I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~s~Fk~qL~~Lm~~L~~t~ph 661 (821)
T PTZ00014 582 IKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKGKLAKGQLIGSQFLNQLDSLMSLINSTEPH 661 (821)
T ss_pred EEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhcccccccccccCCCcHHHHHHHHHHHHHHHHhccCCe
Confidence 99999999999999999999999999999999999999999998754444444567899999999999999999999999
Q ss_pred EEeecCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhCCCCccChhhHHhhhhccccCccc-CCCchHHHHHHHHHHh
Q 000510 627 YIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLE-GNYDDQVACQMILDKK 705 (1456)
Q Consensus 627 ~IrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~ll~~~ 705 (1456)
||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|.+.... ...|++++|+.||+.+
T Consensus 662 fIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~il~~~ 741 (821)
T PTZ00014 662 FIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLERS 741 (821)
T ss_pred EEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999887543 2358999999999998
Q ss_pred CC--CCeeeccceeecccchhhHHHHHHHhhhh---hhHHHHhhhhhchHHHHHHHHhhhhHHHHHHHHHHhHHHHH
Q 000510 706 GL--KGYQIGKTKVFLRAGQMAELDARRAEVLG---NAARKIQRQTRTYIARKEFILLRNAAVILQSFLRGEMARKL 777 (1456)
Q Consensus 706 ~~--~~~qiGkTkVFlr~~~~~~Le~~r~~~l~---~aa~~IQ~~~R~~l~Rk~~~~~r~aai~IQa~~Rg~laRk~ 777 (1456)
++ ++|++|+||||||+++++.||..|.+++. .++..||++||+|++|++|++.+.+++.||++|||+++++.
T Consensus 742 ~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 742 GLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred CCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 76 48999999999999999999998877754 57788888888888888888888888888888888877654
No 3
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=2.6e-190 Score=1771.89 Aligned_cols=674 Identities=87% Similarity=1.326 Sum_probs=648.8
Q ss_pred CCCCcccCCCCCChhhHHHHHHHHhccCccccccCceEEEeCCCcCCCCCCCHHHHHHhhcCCcCCCCchhhhHHHHHHH
Q 000510 62 GGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYR 141 (1456)
Q Consensus 62 ~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~ 141 (1456)
+|||||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+|.||++++|+.|+++..+++|||||+||++||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCcccHHHHHhhcchHHHhccCccccCCCCCCccccEEEE
Q 000510 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 221 (1456)
Q Consensus 142 ~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l 221 (1456)
+|.+.++||||||||||||||||++|++|+|||.+++..+..+.+|+++|+++||||||||||||++||||||||||++|
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l 160 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 160 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEE
Confidence 99999999999999999999999999999999999876555557899999999999999999999999999999999999
Q ss_pred EecCCCccceeeeeeeccCCccccccCCCCCcceeehhcccCCHHHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000510 222 QFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 301 (1456)
Q Consensus 222 ~f~~~g~i~ga~i~tyLLEksRvv~q~~~ErnfHiFYql~~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 301 (1456)
+||.+|.|+||+|.+|||||||||.|++||||||||||||+++++++++|+|.++.+|+||++++|+.++++||+++|.+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~~ 240 (674)
T cd01384 161 QFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAAPPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLA 240 (674)
T ss_pred EECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcCCHHHHHHcCCCChHhCccccCCCCccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCccccccccCccchHHHHHHHHhcCCCHHHHHHhhheeEEEeCC
Q 000510 302 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPE 381 (1456)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 381 (1456)
|+.||+.|||+++++.+||+|||||||||||+|....+.|++.+.+..+...++.||.||||++++|.++|+++++.+++
T Consensus 241 ~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~ 320 (674)
T cd01384 241 TRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTPE 320 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987655566666665556789999999999999999999999999999
Q ss_pred ceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEeccccCCCCCCCChhHHHhhhhhhHHHhh
Q 000510 382 EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQH 461 (1456)
Q Consensus 382 e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNEkLq~~ 461 (1456)
|.+++++++++|.++||||||+||++||+|||.+||.+|+++.....+||||||||||+|+.|||||||||||||+|||+
T Consensus 321 e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~ 400 (674)
T cd01384 321 EVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQH 400 (674)
T ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccCcCCHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999998877789999999999999999999999999999999999
Q ss_pred HhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCccccccchhccCCCCchHHHHHHHHHHhcCCCCccCCCCC
Q 000510 462 FNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPKLS 541 (1456)
Q Consensus 462 f~~~~f~~eq~ey~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~f~~p~~~ 541 (1456)
||+|||+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.+++|++|.+|+..
T Consensus 401 f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~ 480 (674)
T cd01384 401 FNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPKLS 480 (674)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcEEEeccceeeecccchhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCcCCCCCCcchhHHHHHHHHHHHHHHh
Q 000510 542 RTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLN 621 (1456)
Q Consensus 542 ~~~F~I~Hyag~V~Y~~~~fleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~Lm~~l~ 621 (1456)
+..|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+..+..+.+.++++||+++||.||+.||++|+
T Consensus 481 ~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~~~fk~~L~~L~~~L~ 560 (674)
T cd01384 481 RTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSKFSSIGSRFKQQLQSLMETLS 560 (674)
T ss_pred CCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999987665555566789999999999999999999
Q ss_pred ccCCeEEeecCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhCCCCccChhhHHhhhhccccCcccCCCchHHHHHHH
Q 000510 622 ATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMI 701 (1456)
Q Consensus 622 ~t~~h~IrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~l 701 (1456)
+|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++.......++++.|+.|
T Consensus 561 ~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~i 640 (674)
T cd01384 561 TTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVLKGSSDDKAACKKI 640 (674)
T ss_pred ccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccccCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998766667889999999
Q ss_pred HHHhCCCCeeeccceeecccchhhHHHHHHHhhh
Q 000510 702 LDKKGLKGYQIGKTKVFLRAGQMAELDARRAEVL 735 (1456)
Q Consensus 702 l~~~~~~~~qiGkTkVFlr~~~~~~Le~~r~~~l 735 (1456)
|+.++.++|++|+||||||+|+++.||.+|.+.+
T Consensus 641 l~~~~~~~~~~GktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 641 LDKMGLKGYQIGKTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred HHhCCCCCEEecCeeEEEcCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998753
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=7.3e-186 Score=1813.07 Aligned_cols=773 Identities=42% Similarity=0.713 Sum_probs=723.1
Q ss_pred cccccCcEEEEeCCCCCeEeEEEEEEcCCeEEEEeCCCcEEE-EecccccCCCCCCCCCCCCcccCCCCCChhhHHHHHH
Q 000510 5 DNIIVGSHVWVEDPVLAWINGEVMWINGQEVHVNCTNGKKVV-TSVSKVFPEDTEAPAGGVDDMTKLSYLHEPGVLQNLA 83 (1456)
Q Consensus 5 ~~~~~g~~vwv~~~~~~w~~~~v~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~Dl~~L~~l~e~~vL~~L~ 83 (1456)
..+..-.+|||||++++|+.|.|.+..|+.|+|.+.+|...+ |+.++++|+||| .++.+|||+.|+|||||+|||||+
T Consensus 25 ~~~d~kk~vWvpd~~e~fv~~~i~~~~~~~v~v~~~~~~~~~~v~~~~v~~~NPP-kfdk~eDMa~LT~lNeasVL~nL~ 103 (1930)
T KOG0161|consen 25 RPFDSKKWVWVPDPKEGFVKAEIKSEEGEKVTVETEEGGTLTQVKEDDVQKMNPP-KFDKVEDMAELTFLNEASVLHNLK 103 (1930)
T ss_pred cchhhcceeeecCCCCCeeeeeeeccCCCceEEEEcCCceeEEecHHHcCcCCCC-CccccccHHHhcccChHHHHhhHH
Confidence 456677899999999999999999988777999998877766 999999999986 678999999999999999999999
Q ss_pred HHhccCccccccCceEEEeCCCcCCCCCCCHHHHHHhhcCCcCCCCchhhhHHHHHHHHHHhcCCCeEEEecCCCCCCch
Q 000510 84 TRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKT 163 (1456)
Q Consensus 84 ~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKT 163 (1456)
.||..+.||||+|.+||+||||+++| ||+++++++|+|+.+.++||||||||+.||+.|+.++.||||+|+||||||||
T Consensus 104 ~RY~~~lIyTYSGLFcVviNPyk~lp-iYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLiTGESGAGKT 182 (1930)
T KOG0161|consen 104 QRYASDLIYTYSGLFCVVINPYKRLP-IYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILITGESGAGKT 182 (1930)
T ss_pred HHHHhChHHHcccceeEEecCCcCCC-CCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEeeecCCCCCcc
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCC---cccHHHHHhhcchHHHhccCccccCCCCCCccccEEEEEecCCCccceeeeeeeccC
Q 000510 164 ETTKMLMRYLAYLGGRSGVE---GRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLE 240 (1456)
Q Consensus 164 e~~k~~~~yla~~~~~~~~~---~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l~f~~~g~i~ga~i~tyLLE 240 (1456)
|+||.||+|||.+++++... +.+++++|+++||||||||||+|++|||||||||||+|+||.+|.|+||.|++||||
T Consensus 183 eNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLLE 262 (1930)
T KOG0161|consen 183 ENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLLE 262 (1930)
T ss_pred hhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHHH
Confidence 99999999999998754221 258999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCcceeehhccc-CCHHHHhhcCCCC-CCCCccccCCCccccCCCCcHHHHHHHHhhhhhcccChHHHHH
Q 000510 241 RSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGS-PKSFHYLNQSNCYELDGVSDAHEYLATRRAMDIVGISDQEQEA 318 (1456)
Q Consensus 241 ksRvv~q~~~ErnfHiFYql~~-~~~~~~~~~~l~~-~~~~~yl~~~~~~~~~~~~d~~~f~~~~~al~~lg~~~~~~~~ 318 (1456)
||||++|+++|||||||||+++ +.+.++..|.|.+ +.+|.|+.++.. .+||+||+++|..|..||+++||+++++.+
T Consensus 263 KsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef~~t~~a~~ilgfs~~E~~~ 341 (1930)
T KOG0161|consen 263 KSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEFQETDEAMDILGFSEEEKIS 341 (1930)
T ss_pred HhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999 7788899999976 899999999887 999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCceeccCCccccccccCccchHHHHHHHHhcCCCHHHHHHhhheeEEEeCCceEeccCChhhHHHhHH
Q 000510 319 IFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPEEVITRTLDPVNAVASRD 398 (1456)
Q Consensus 319 i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~l~~~~a~~~rd 398 (1456)
||+|+||||||||+.|......+.+.+.+.. ..+.+|.||||+.+.|.++++++++.++++.+.+..+.+|+..+..
T Consensus 342 ~~~i~sailhlGn~~f~~~~~~~qa~~~~~~---~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~ 418 (1930)
T KOG0161|consen 342 IFRIVSAILHLGNIKFKQEPREEQAEFDNTE---VADKACHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVE 418 (1930)
T ss_pred HHHHHHHHHHhcchhhhccccccccCCCCch---HHHHHHHHcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHH
Confidence 9999999999999999986555666655543 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEeccccCCCCCCCChhHHHhhhhhhHHHhhHhhhhhhhhHHHhhhcC
Q 000510 399 ALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREE 478 (1456)
Q Consensus 399 alak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNEkLq~~f~~~~f~~eq~ey~~Eg 478 (1456)
||||++|+|||.|+|.+||.+|.......+|||||||+|||+|+.||||||||||+||||||+||+|||.+||++|.+||
T Consensus 419 alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~Eg 498 (1930)
T KOG0161|consen 419 ALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREG 498 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhC
Confidence 99999999999999999999999877788999999999999999999999999999999999999999999999999999
Q ss_pred Cccccccc-cChHHHHHHhhcCCCccccccchhccCCCCchHHHHHHHHHHh-cCCCCccCCC--CCCCCcEEEecccee
Q 000510 479 INWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTF-AKNNRFSKPK--LSRTDFTILHYAGEV 554 (1456)
Q Consensus 479 i~~~~i~~-~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~-~~~~~f~~p~--~~~~~F~I~Hyag~V 554 (1456)
|.|+||+| .|-||||||||+ |+||+++|||||++|++||.+|+.||+..| ++|+.|.+|+ ....+|.|.||||+|
T Consensus 499 Iew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V 577 (1930)
T KOG0161|consen 499 IEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTV 577 (1930)
T ss_pred CceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccccCcccccchhhhheeeeccee
Confidence 99999999 799999999995 669999999999999999999999999999 8999999997 567899999999999
Q ss_pred eecccchhhhcccchHHHHHHHHHhcchhhHhhcCCCCCC-----------CcCCCCCCcchhHHHHHHHHHHHHHHhcc
Q 000510 555 TYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPE-----------ESSKSSKFSSIGSRFKLQLQSLMETLNAT 623 (1456)
Q Consensus 555 ~Y~~~~fleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~-----------~~~~~~~~~tv~~~f~~~l~~Lm~~l~~t 623 (1456)
.|+++||++||+|++++.++.+|..|++++|+.||.+... ..+|++.|.||+..||.||+.||.+|++|
T Consensus 578 ~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~~~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T 657 (1930)
T KOG0161|consen 578 DYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAAAAKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRST 657 (1930)
T ss_pred ccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999987211 23455678899999999999999999999
Q ss_pred CCeEEeecCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhCCCCccChhhHHhhhhccccCccc-CCCchHHHHHHHH
Q 000510 624 APHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLE-GNYDDQVACQMIL 702 (1456)
Q Consensus 624 ~~h~IrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~ll 702 (1456)
+|||||||.||+.|.|+.+|.++|+.||||.||||+|||+|.|||+|++|.+|..||.++.|.... +..|.+.+|..++
T Consensus 658 ~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~ 737 (1930)
T KOG0161|consen 658 HPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKIL 737 (1930)
T ss_pred CCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999955555443 3467799999999
Q ss_pred HHhCCC--CeeeccceeecccchhhHHHHHHHhhhhhhHHHHhhhhhchHHHHHHHHh---hhhHHHHHHHHHHhHHHHH
Q 000510 703 DKKGLK--GYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIARKEFILL---RNAAVILQSFLRGEMARKL 777 (1456)
Q Consensus 703 ~~~~~~--~~qiGkTkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~l~Rk~~~~~---r~aai~IQa~~Rg~laRk~ 777 (1456)
..+..+ -|++|.||||||+|+++.||.+|...+....+.+|+.+|||++|+.|.+. ..++.+||+.+|.|+..+.
T Consensus 738 ~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~ 817 (1930)
T KOG0161|consen 738 EELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRT 817 (1930)
T ss_pred HHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 988654 69999999999999999999999999999999999999999999988766 4688899999999988888
Q ss_pred HHHHHHH
Q 000510 778 YEQLRRE 784 (1456)
Q Consensus 778 ~~~~r~~ 784 (1456)
|.+.+..
T Consensus 818 w~W~~Lf 824 (1930)
T KOG0161|consen 818 WPWWRLF 824 (1930)
T ss_pred CHHHHHH
Confidence 8887753
No 5
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.8e-187 Score=1716.77 Aligned_cols=752 Identities=63% Similarity=0.999 Sum_probs=724.2
Q ss_pred CCCCCCcccCCCCCChhhHHHHHHHHhccCccccccCceEEEeCCCcCCCCCCCHHHHHHhhcCCcCCCCchhhhHHHHH
Q 000510 60 PAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAA 139 (1456)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~A 139 (1456)
++.|+|||+.|+|||||+|||||+.||..+.||||+|.+|||||||+++|++|++++|..|+ ...+++.||+||||+.|
T Consensus 6 ~~~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~favA~~a 84 (862)
T KOG0160|consen 6 PPMGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAVAEEA 84 (862)
T ss_pred CCCCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhHHHHH
Confidence 44799999999999999999999999999999999999999999999999999999999999 88999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCcccHHHHHhhcchHHHhccCccccCCCCCCccccEE
Q 000510 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1456)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~ 219 (1456)
|+.|..++.|||||||||||||||+++|++|+|||+++++ ..+.+||++||+|||||||||||||+|||||||||||+
T Consensus 85 y~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~--~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~i 162 (862)
T KOG0160|consen 85 YRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGS--VEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKVI 162 (862)
T ss_pred HHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhcc--chhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhHH
Confidence 9999999999999999999999999999999999999986 34578999999999999999999999999999999999
Q ss_pred EEEecCCCccceeeeeeeccCCccccccCCCCCcceeehhcccCCHHHHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000510 220 EIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEY 299 (1456)
Q Consensus 220 ~l~f~~~g~i~ga~i~tyLLEksRvv~q~~~ErnfHiFYql~~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f 299 (1456)
+|+||.+|+|+||.|+||||||||||.++++|||||||||+|++.++++++|+|+++..|+|++|++|..++++||+++|
T Consensus 163 ei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~e~ 242 (862)
T KOG0160|consen 163 EITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAPEELEKLKLGTLRRFSYLNQSACVLISGVSDAEEF 242 (862)
T ss_pred HHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCchhhhccCcCccccceecccccchhhcccccHHHH
Confidence 99999999999999999999999999999999999999999995559999999999999999999999999999999999
Q ss_pred HHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCccccccccCccchHHHHHHHHhcCCCHHHHHHhhheeEEEe
Q 000510 300 LATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT 379 (1456)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 379 (1456)
..|+.||..+||+.++|+.||++||||||||||+|..+.+.+++.+.++ ++..+|.|||++.+.|..+|+.|.+.+
T Consensus 243 ~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~----~~~~~a~Llg~~~~~l~~~L~~r~i~~ 318 (862)
T KOG0160|consen 243 LSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD----HLWTAAELLGCDEEALEQWLSKRKILT 318 (862)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch----HHHHHHHHhCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999998876655555543 799999999999999999999999999
Q ss_pred CCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCC-CCCCCeEEEEeccccCCCCCCCChhHHHhhhhhhHH
Q 000510 380 PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQ-DPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKL 458 (1456)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~-~~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNEkL 458 (1456)
+++.|++++++.+|...||++||.||++||+|+|++||.+|+. ++....+||||||||||+|+.|||||||||||||||
T Consensus 319 ~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkL 398 (862)
T KOG0160|consen 319 ARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKL 398 (862)
T ss_pred ccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHh
Confidence 9999999999999999999999999999999999999999997 445689999999999999999999999999999999
Q ss_pred HhhHhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCccccccchhccCCCCchHHHHHHHHHHhcCCCCccCC
Q 000510 459 QQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKP 538 (1456)
Q Consensus 459 q~~f~~~~f~~eq~ey~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~f~~p 538 (1456)
||+||+|||++||+||.+|||+|+.|+|.||++|+++||+ |.||++||||||++|.++|++|..||++.+.+|+.|.+|
T Consensus 399 qq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f~kp 477 (862)
T KOG0160|consen 399 QQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRFTKP 477 (862)
T ss_pred hHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCccCCC
Confidence 9999999999999999999999999999999999999998 889999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEeccceeeecccchhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCcCCCCCCcchhHHHHHHHHHHHH
Q 000510 539 KLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLME 618 (1456)
Q Consensus 539 ~~~~~~F~I~Hyag~V~Y~~~~fleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~Lm~ 618 (1456)
+++++.|+|.||||+|+|+++|||+||||+|++++.+++..|+++|+..+|++..+++.+.++++||+++|+.||..||+
T Consensus 478 r~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~tv~s~fk~~l~~Lm~ 557 (862)
T KOG0160|consen 478 RLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSSAKSKRSTVGSQFKLQLISLME 557 (862)
T ss_pred CCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchhhhhhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997766666667889999999999999999
Q ss_pred HHhccCCeEEeecCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhCCCCccChhhHHhhhhccccCcccCCCchHHHH
Q 000510 619 TLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVAC 698 (1456)
Q Consensus 619 ~l~~t~~h~IrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~ 698 (1456)
+|++|+||||||||||+.+.|+.|+..+|++|||||||||+|||+++|||.|++|.||+.||++|+| ... ..|++..|
T Consensus 558 ~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~~~-~~~~~~~~ 635 (862)
T KOG0160|consen 558 TLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-NDS-ASDDLSLC 635 (862)
T ss_pred HhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-chh-cccchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 333 34669999
Q ss_pred HHHHHHhCCCCeeeccceeecccchhhHHHHHHHhhhhhhHHHHhhhhhchHHHHHHHHhhhhHHHHHHHHHHhHHHHHH
Q 000510 699 QMILDKKGLKGYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIARKEFILLRNAAVILQSFLRGEMARKLY 778 (1456)
Q Consensus 699 ~~ll~~~~~~~~qiGkTkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~l~Rk~~~~~r~aai~IQa~~Rg~laRk~~ 778 (1456)
+.+|+.++.+.||+|+||||||+|+++.||.+|..++..+++.||+.+|+|+.|++|..+|++++.||+.+||+++|+
T Consensus 636 ~~il~~~~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~-- 713 (862)
T KOG0160|consen 636 KVILEKLGLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR-- 713 (862)
T ss_pred HHHHHHhchhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000510 779 EQLRREAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARN 824 (1456)
Q Consensus 779 ~~~r~~~AAi~IQ~~~R~~~aRk~~~~~r~a~i~iQs~~Rg~laRr 824 (1456)
..+ +..||+.||+.+|+|..|++|..++.+++.+|+.+|++++|+
T Consensus 714 ~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 714 ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444 678999999999999999999999999999999999999998
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=6.7e-186 Score=1742.53 Aligned_cols=664 Identities=51% Similarity=0.857 Sum_probs=626.2
Q ss_pred CCCcccCCCCCChhhHHHHHHHHhccCccccccCceEEEeCCCcCCCCCCCHHHHHHhhcCCcCCCCchhhhHHHHHHHH
Q 000510 63 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRA 142 (1456)
Q Consensus 63 ~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 142 (1456)
|+|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|++++++.|+++..+++||||||||+.||+.
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 79 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLP-IYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQ 79 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCC-cCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999 79999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCC--CCcccHHHHHhhcchHHHhccCccccCCCCCCccccEEE
Q 000510 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG--VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 220 (1456)
Q Consensus 143 m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~--~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~ 220 (1456)
|..+++||||||||||||||||++|+||+|||.+++... .....|+++|+++||||||||||||+|||||||||||++
T Consensus 80 m~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~ 159 (691)
T cd01380 80 MTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQ 159 (691)
T ss_pred HHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEE
Confidence 999999999999999999999999999999999987542 224679999999999999999999999999999999999
Q ss_pred EEecCCCccceeeeeeeccCCccccccCCCCCcceeehhccc-CCHHHHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000510 221 IQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEY 299 (1456)
Q Consensus 221 l~f~~~g~i~ga~i~tyLLEksRvv~q~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f 299 (1456)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|
T Consensus 160 l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f 239 (691)
T cd01380 160 ILFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDF 239 (691)
T ss_pred EEECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHH
Confidence 999999999999999999999999999999999999999999 6889999999999999999999999999999999999
Q ss_pred HHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCccccccccCccchHHHHHHHHhcCCCHHHHHHhhheeEEEe
Q 000510 300 LATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT 379 (1456)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 379 (1456)
..|+.||+.|||+++++.+||+|||||||||||+|.+..+ +.+.+.. +...++.||+||||++++|.++||+|++.+
T Consensus 240 ~~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~-~~~~~~~--~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 316 (691)
T cd01380 240 NATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRN-DSSSISP--KDENLQIACELLGVDASDLRKWLVKRQIVT 316 (691)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCC-ccceecC--ChHHHHHHHHHhCCCHHHHHHHHHhCEEEE
Confidence 9999999999999999999999999999999999987643 2322221 224699999999999999999999999999
Q ss_pred CCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCC---CCCCeEEEEeccccCCCCCCCChhHHHhhhhhh
Q 000510 380 PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQD---PDSKSIIGVLDIYGFESFKCNSFEQFCINFTNE 456 (1456)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~---~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNE 456 (1456)
++|.++++++++||.++||||||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||||||
T Consensus 317 ~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNE 396 (691)
T cd01380 317 RSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANE 396 (691)
T ss_pred CCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhH
Confidence 99999999999999999999999999999999999999999876 456789999999999999999999999999999
Q ss_pred HHHhhHhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCccccccchhccCCCCchHHHHHHHHHHhc--CCCC
Q 000510 457 KLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFA--KNNR 534 (1456)
Q Consensus 457 kLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~--~~~~ 534 (1456)
||||+||+|+|+.||++|.+|||+|++|+|.||++|||||+++ .|||++|||||++|+|||++|++||++.|+ +|+.
T Consensus 397 kLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~-~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~ 475 (691)
T cd01380 397 KLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESK-LGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPH 475 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhCC-CchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCC
Confidence 9999999999999999999999999999999999999999974 799999999999999999999999999998 8999
Q ss_pred ccCCCCCCCCcEEEeccceeeecccchhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCc-----------------C
Q 000510 535 FSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEES-----------------S 597 (1456)
Q Consensus 535 f~~p~~~~~~F~I~Hyag~V~Y~~~~fleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-----------------~ 597 (1456)
|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+...... .
T Consensus 476 ~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (691)
T cd01380 476 FEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPKR 555 (691)
T ss_pred ccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccccccccccccccccccccc
Confidence 99999888999999999999999999999999999999999999999999999997532110 1
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhccCCeEEeecCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhCCCCccChhhHH
Q 000510 598 KSSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFV 677 (1456)
Q Consensus 598 ~~~~~~tv~~~f~~~l~~Lm~~l~~t~~h~IrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~ 677 (1456)
+..+.+||+++||.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+
T Consensus 556 ~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~ 635 (691)
T cd01380 556 AKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFA 635 (691)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHH
Confidence 12356899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCcccCCCchHHHHHHHHHHhCC--CCeeeccceeecccchhhHHHHHH
Q 000510 678 NRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1456)
Q Consensus 678 ~ry~~l~~~~~~~~~~~~~~~~~ll~~~~~--~~~qiGkTkVFlr~~~~~~Le~~r 731 (1456)
.||++|+|.......|+++.|+.||+.+.. ..|++|+||||||+++++.||+.|
T Consensus 636 ~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 636 QRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 999999998664456899999999999875 589999999999999999999876
No 7
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=1.8e-185 Score=1730.59 Aligned_cols=661 Identities=46% Similarity=0.766 Sum_probs=625.7
Q ss_pred CCCcccCCCCCChhhHHHHHHHHhccCccccccCceEEEeCCCcCCCCCCCHHHHHHhhcCCcCCCCchhhhHHHHHHHH
Q 000510 63 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRA 142 (1456)
Q Consensus 63 ~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 142 (1456)
|||||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|+++.|+.|+++..+++||||||||+.||+.
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILP-IYTADEIKLYKNKSIGELPPHIFAISDNAYTN 79 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCC-CCCHHHHHHHhcCCccccCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCcccHHHHHhhcchHHHhccCccccCCCCCCccccEEEEE
Q 000510 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 222 (1456)
Q Consensus 143 m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l~ 222 (1456)
|..+++||||||||||||||||++|++|+|||.+++.. ..|+++|++|||||||||||||+|||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~ 155 (671)
T cd01381 80 MQREKKNQCIIISGESGAGKTESTKLILQYLAAISGKH----SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIH 155 (671)
T ss_pred HHHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEE
Confidence 99999999999999999999999999999999997642 46999999999999999999999999999999999999
Q ss_pred ecCCCccceeeeeeeccCCccccccCCCCCcceeehhccc-CCHHHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000510 223 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 301 (1456)
Q Consensus 223 f~~~g~i~ga~i~tyLLEksRvv~q~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 301 (1456)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|..
T Consensus 156 F~~~g~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~ 235 (671)
T cd01381 156 FNKRGAIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFAD 235 (671)
T ss_pred ECCCCcEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCc--cccccccCccchHHHHHHHHhcCCCHHHHHHhhheeEEEe
Q 000510 302 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE--IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT 379 (1456)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 379 (1456)
++.||+.|||+++++.+||+|||||||||||+|.+... .+.+.+.+. ..++.||.||||++++|.++||+|++.+
T Consensus 236 ~~~al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~---~~l~~~a~LLgv~~~~L~~~lt~~~~~~ 312 (671)
T cd01381 236 IRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDT---PNLQRVAQLLGVPIQDLMDALTSRTIFT 312 (671)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCCh---HHHHHHHHHhCCCHHHHhhhhceEEEEe
Confidence 99999999999999999999999999999999987532 234555443 4799999999999999999999999999
Q ss_pred CCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCC-CCCCeEEEEeccccCCCCCCCChhHHHhhhhhhHH
Q 000510 380 PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQD-PDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKL 458 (1456)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNEkL 458 (1456)
+++.+++|++++||..+||||||+||++||+|||.+||.+|..+ .....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkL 392 (671)
T cd01381 313 RGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENL 392 (671)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999765 45678999999999999999999999999999999
Q ss_pred HhhHhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCccccccchhccCCCCchHHHHHHHHHHhcCCCCccCC
Q 000510 459 QQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKP 538 (1456)
Q Consensus 459 q~~f~~~~f~~eq~ey~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~f~~p 538 (1456)
||+||+|||+.||++|.+|||+|.+|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.+++|++|.+|
T Consensus 393 Q~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~ 472 (671)
T cd01381 393 QQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKP 472 (671)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC-CCCCcEEEeccceeeecccchhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCc-CCCCCCcchhHHHHHHHHHH
Q 000510 539 KL-SRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEES-SKSSKFSSIGSRFKLQLQSL 616 (1456)
Q Consensus 539 ~~-~~~~F~I~Hyag~V~Y~~~~fleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-~~~~~~~tv~~~f~~~l~~L 616 (1456)
+. ....|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+...... ..+.|.+||+++||.||+.|
T Consensus 473 ~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~k~~tv~~~fk~qL~~L 552 (671)
T cd01381 473 KSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAETRKKKPTLSSQFRRSLDLL 552 (671)
T ss_pred CCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccccccccccCCcHHHHHHHHHHHH
Confidence 75 46799999999999999999999999999999999999999999999998754222 22336689999999999999
Q ss_pred HHHHhccCCeEEeecCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhCCCCccChhhHHhhhhccccCcccC--CCch
Q 000510 617 METLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEG--NYDD 694 (1456)
Q Consensus 617 m~~l~~t~~h~IrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~--~~~~ 694 (1456)
|++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|+|..... ..+.
T Consensus 553 ~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~ 632 (671)
T cd01381 553 MRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQDCL 632 (671)
T ss_pred HHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875432 3477
Q ss_pred HHHHHHHHHHhCC--CCeeeccceeecccchhhHHHHHH
Q 000510 695 QVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1456)
Q Consensus 695 ~~~~~~ll~~~~~--~~~qiGkTkVFlr~~~~~~Le~~r 731 (1456)
+++|+.+++.+.+ ++|++|+||||||+++++.||..|
T Consensus 633 ~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 633 AGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 8999999998765 489999999999999999999875
No 8
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=3e-185 Score=1737.05 Aligned_cols=667 Identities=45% Similarity=0.761 Sum_probs=627.2
Q ss_pred CCCCCCcccCCCCCChhhHHHHHHHHhccCccccccCceEEEeCCCcCCCCCCCHHHHHHhhcCCcCCCCchhhhHHHHH
Q 000510 60 PAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAA 139 (1456)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~A 139 (1456)
..+++|||+.|++|||++|||+|+.||..+.||||+|+||||||||+++| +|++++|+.|+++..+++|||||+||+.|
T Consensus 3 ~~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHiyaiA~~A 81 (693)
T cd01377 3 KFDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLP-IYTEEVVEMYRGKKREEMPPHIFAIADNA 81 (693)
T ss_pred cccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCC------CCcccHHHHHhhcchHHHhccCccccCCCCCC
Q 000510 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG------VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSS 213 (1456)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~------~~~~~ie~~il~snpiLEaFGNAkT~rN~NSS 213 (1456)
|+.|...++||||||||||||||||++|+||+|||.+++... .....|+++|+++||||||||||||+||||||
T Consensus 82 y~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSS 161 (693)
T cd01377 82 YRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSS 161 (693)
T ss_pred HHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCcc
Confidence 999999999999999999999999999999999999986532 12357999999999999999999999999999
Q ss_pred ccccEEEEEecCCCccceeeeeeeccCCccccccCCCCCcceeehhccc-CCHHHHhhcCCCCC-CCCccccCCCccccC
Q 000510 214 RFGKFVEIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSP-KSFHYLNQSNCYELD 291 (1456)
Q Consensus 214 RfGk~~~l~f~~~g~i~ga~i~tyLLEksRvv~q~~~ErnfHiFYql~~-~~~~~~~~~~l~~~-~~~~yl~~~~~~~~~ 291 (1456)
|||||++|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++ .+|+||++++| .++
T Consensus 162 RFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~-~~~ 240 (693)
T cd01377 162 RFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGEL-TIP 240 (693)
T ss_pred ccceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCc-cCC
Confidence 9999999999999999999999999999999999999999999999999 78899999999876 89999999886 578
Q ss_pred CCCcHHHHHHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCccccccccCccchHHHHHHHHhcCCCHHHHHHh
Q 000510 292 GVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDA 371 (1456)
Q Consensus 292 ~~~d~~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~ 371 (1456)
++||+++|.+|+.||+.|||+++++.+||+|||||||||||+|....+.+.+.+.+. ..++.||.||||++++|.++
T Consensus 241 ~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~ 317 (693)
T cd01377 241 GVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGT---EEADKAAHLLGVNSADLLKA 317 (693)
T ss_pred CCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCCh---HHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999987544455555443 47999999999999999999
Q ss_pred hheeEEEeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEeccccCCCCCCCChhHHHh
Q 000510 372 LIKRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCI 451 (1456)
Q Consensus 372 l~~~~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcI 451 (1456)
||++++.++++.+++|+++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||
T Consensus 318 l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcI 397 (693)
T cd01377 318 LLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIFDFNSFEQLCI 397 (693)
T ss_pred hcceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEecccccccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887788999999999999999999999999
Q ss_pred hhhhhHHHhhHhhhhhhhhHHHhhhcCCccccccc-cChHHHHHHhhcCCCccccccchhccCCCCchHHHHHHHHHHhc
Q 000510 452 NFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFA 530 (1456)
Q Consensus 452 NyaNEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~-~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~ 530 (1456)
|||||||||+||+|||+.||++|.+|||+|+.|+| .||++|||||+++|.|||++|||||++|+|||++|++||++.|+
T Consensus 398 NyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~ 477 (693)
T cd01377 398 NYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHL 477 (693)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999 59999999999999999999999999999999999999999999
Q ss_pred CCCCc--cCCCCCCCCcEEEeccceeeecccchhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCC----------cCC
Q 000510 531 KNNRF--SKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEE----------SSK 598 (1456)
Q Consensus 531 ~~~~f--~~p~~~~~~F~I~Hyag~V~Y~~~~fleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~----------~~~ 598 (1456)
+|++| .+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+..... +.+
T Consensus 478 ~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~ 557 (693)
T cd01377 478 GKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGDGGGGGGKKKK 557 (693)
T ss_pred CCCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccccccccCCCCc
Confidence 99988 445556789999999999999999999999999999999999999999999999754221 112
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhccCCeEEeecCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhCCCCccChhhHHh
Q 000510 599 SSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVN 678 (1456)
Q Consensus 599 ~~~~~tv~~~f~~~l~~Lm~~l~~t~~h~IrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ 678 (1456)
.++++||+++||.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+++|||+|++|++|++
T Consensus 558 ~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~ 637 (693)
T cd01377 558 GGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQ 637 (693)
T ss_pred CCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHH
Confidence 23568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCcc-cCCCchHHHHHHHHHHhCCC--CeeeccceeecccchhhHHHHHH
Q 000510 679 RFGILAPEVL-EGNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDARR 731 (1456)
Q Consensus 679 ry~~l~~~~~-~~~~~~~~~~~~ll~~~~~~--~~qiGkTkVFlr~~~~~~Le~~r 731 (1456)
||++|+|... ....|+|+.|+.||+.++++ +|++|+||||||++++..||.+|
T Consensus 638 rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 638 RYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 9999998763 33468899999999998874 79999999999999999999876
No 9
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=4.9e-184 Score=1715.92 Aligned_cols=657 Identities=48% Similarity=0.804 Sum_probs=615.7
Q ss_pred CCCCCCcccCCCCCChhhHHHHHHHHhccCccccccCceEEEeCCCcCCCCCCCHHHHHHhhcCCcCCCCchhhhHHHHH
Q 000510 60 PAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAA 139 (1456)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~A 139 (1456)
..+++|||+.|++|||++|||||+.||..+.||||+|+||||||||+.+| +|++++++.|+++. ..|||||+||++|
T Consensus 6 ~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~y~~~~--~~~PHifaiA~~A 82 (677)
T cd01383 6 ILDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVP-LYGNDYIEAYRKKS--NDSPHVYAIADTA 82 (677)
T ss_pred cccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCC-CCCHHHHHHhhCCC--CCCCCHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999998 99999999998764 4699999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCcccHHHHHhhcchHHHhccCccccCCCCCCccccEE
Q 000510 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1456)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~ 219 (1456)
|+.|..+++||||||||||||||||++|++|+|||.++++ ..|+++|+++||||||||||||+|||||||||||+
T Consensus 83 y~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~-----~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~ 157 (677)
T cd01383 83 YNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGG-----SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLI 157 (677)
T ss_pred HHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHHHhhccccCCCCCcCccceeE
Confidence 9999999999999999999999999999999999999753 36999999999999999999999999999999999
Q ss_pred EEEecCCCccceeeeeeeccCCccccccCCCCCcceeehhccc-CCHHHHhhcCCCCCCCCccccCCCccccCCCCcHHH
Q 000510 220 EIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHE 298 (1456)
Q Consensus 220 ~l~f~~~g~i~ga~i~tyLLEksRvv~q~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~ 298 (1456)
+|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|+.++++||+++
T Consensus 158 ~l~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~ 237 (677)
T cd01383 158 EIHFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQR 237 (677)
T ss_pred EEEECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHH
Confidence 9999999999999999999999999999999999999999999 788999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCccccccccCccchHHHHHHHHhcCCCHHHHHHhhheeEEE
Q 000510 299 YLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMV 378 (1456)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 378 (1456)
|..|+.||+.|||+++++.+||+|||||||||||+|.+..+.+...+.+ ...++.||+||||++++|.++||++++.
T Consensus 238 f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 314 (677)
T cd01383 238 FHTLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVA---DEALSTAAKLIGCNIEDLMLALSTRKMH 314 (677)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCC---hHHHHHHHHHhCCCHHHHHHHhhhcEEE
Confidence 9999999999999999999999999999999999998654333333332 2469999999999999999999999999
Q ss_pred eCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCC-CCeEEEEeccccCCCCCCCChhHHHhhhhhhH
Q 000510 379 TPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPD-SKSIIGVLDIYGFESFKCNSFEQFCINFTNEK 457 (1456)
Q Consensus 379 ~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~-~~~~IgiLDi~GFE~f~~NsfeQlcINyaNEk 457 (1456)
++++.++++++++||..+||||||+||++||+|||.+||.+|.+... ...+||||||||||+|+.||||||||||||||
T Consensus 315 ~~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEk 394 (677)
T cd01383 315 VNNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANER 394 (677)
T ss_pred eCCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987543 46799999999999999999999999999999
Q ss_pred HHhhHhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCccccccchhccCCCCchHHHHHHHHHHhcCCCCccC
Q 000510 458 LQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSK 537 (1456)
Q Consensus 458 Lq~~f~~~~f~~eq~ey~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~f~~ 537 (1456)
|||+||+|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|||++|++||++++++|+.|.+
T Consensus 395 LQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~ 474 (677)
T cd01383 395 LQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRG 474 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCcEEEeccceeeecccchhhhcccchHHHHHHHHHhcchhhHhhcCCCC-----CC------CcCCCCCCcchh
Q 000510 538 PKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPL-----PE------ESSKSSKFSSIG 606 (1456)
Q Consensus 538 p~~~~~~F~I~Hyag~V~Y~~~~fleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~-----~~------~~~~~~~~~tv~ 606 (1456)
|+ +..|+|+||||+|+|+++||++||+|.++++++++|++|+++++. +|... +. .+.+.++..||+
T Consensus 475 ~~--~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~-~f~~~~~~~s~~~~~~~~~~~~~~~~~tv~ 551 (677)
T cd01383 475 ER--GGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQ-LFASSMLIQSPVVGPLYVASAADSQKLSVG 551 (677)
T ss_pred CC--CCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHH-HHHhhhhccccccccccccccccccCcchH
Confidence 75 578999999999999999999999999999999999999999876 55321 10 011223668999
Q ss_pred HHHHHHHHHHHHHHhccCCeEEeecCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhCCCCccChhhHHhhhhccccC
Q 000510 607 SRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPE 686 (1456)
Q Consensus 607 ~~f~~~l~~Lm~~l~~t~~h~IrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~ 686 (1456)
++||.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|++||++|++.
T Consensus 552 ~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~ 631 (677)
T cd01383 552 TKFKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLE 631 (677)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccCCCchHHHHHHHHHHhCCC--CeeeccceeecccchhhHHHHHH
Q 000510 687 VLEGNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDARR 731 (1456)
Q Consensus 687 ~~~~~~~~~~~~~~ll~~~~~~--~~qiGkTkVFlr~~~~~~Le~~r 731 (1456)
... ..|++..|+.||+.++++ +|++|+||||||+|+++.||..|
T Consensus 632 ~~~-~~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 632 NIA-SQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred ccC-CCCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 544 357889999999998764 89999999999999999999876
No 10
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=6.5e-184 Score=1720.28 Aligned_cols=662 Identities=45% Similarity=0.768 Sum_probs=626.8
Q ss_pred CCCcccCCCCCChhhHHHHHHHHhccCccccccCceEEEeCCCcCCCCCCCHHHHHHhhcCCcCCCCchhhhHHHHHHHH
Q 000510 63 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRA 142 (1456)
Q Consensus 63 ~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 142 (1456)
|||||+.|++|||++|||+|+.||..++||||+|++|||||||+.+| +|++++|+.|+++..+++|||||+||+.||+.
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~ 79 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLP-IYTDETIELYKGKSRYELPPHIYALADNAYRS 79 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCC-CCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCcccHHHHHhhcchHHHhccCccccCCCCCCccccEEEEE
Q 000510 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 222 (1456)
Q Consensus 143 m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l~ 222 (1456)
|..+++||||||||||||||||++|++|+||+.++++.. ....++++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~-~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~ 158 (674)
T cd01378 80 MKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQ-KVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQ 158 (674)
T ss_pred HHHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEE
Confidence 999999999999999999999999999999999986543 2356999999999999999999999999999999999999
Q ss_pred ecCCCccceeeeeeeccCCccccccCCCCCcceeehhccc-CCHHHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000510 223 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 301 (1456)
Q Consensus 223 f~~~g~i~ga~i~tyLLEksRvv~q~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 301 (1456)
|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|+.++++||+++|.+
T Consensus 159 f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 238 (674)
T cd01378 159 FDFKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKE 238 (674)
T ss_pred ECCCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCccccccccCccchHHHHHHHHhcCCCHHHHHHhhheeEEEeCC
Q 000510 302 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPE 381 (1456)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 381 (1456)
+++||+.|||+++++.+||+|||||||||||+|....+ +.+.+.+ ...++.||.||||++++|.++|++|++.+++
T Consensus 239 ~~~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~-~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 314 (674)
T cd01378 239 TQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGD-GAAVISD---KDVLDFAAYLLGVDPSELEKALTSRTIETGG 314 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCC-CccccCC---hHHHHHHHHHcCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987543 2234443 3479999999999999999999999999998
Q ss_pred ----ceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCC-CCCCeEEEEeccccCCCCCCCChhHHHhhhhhh
Q 000510 382 ----EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQD-PDSKSIIGVLDIYGFESFKCNSFEQFCINFTNE 456 (1456)
Q Consensus 382 ----e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNE 456 (1456)
|.+++|+++++|.++||||||+||++||+|||.+||.+|... .....+||||||||||+|+.|||||||||||||
T Consensus 315 ~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNE 394 (674)
T cd01378 315 GGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNE 394 (674)
T ss_pred CCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHH
Confidence 999999999999999999999999999999999999999876 556789999999999999999999999999999
Q ss_pred HHHhhHhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhc-CCCccccccchhccCC-CCchHHHHHHHHHHhcCCCC
Q 000510 457 KLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEK-KPGGIIALLDEACMFP-KSTHETFSQKLCQTFAKNNR 534 (1456)
Q Consensus 457 kLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~dn~~~ldlie~-~~~Gil~lLdee~~~p-~~~d~~~~~kl~~~~~~~~~ 534 (1456)
||||+||+|+|+.||++|.+|||+|++|+|.||++|||||++ +|.|||++|||||++| +|||++|++||++.+++|++
T Consensus 395 kLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~ 474 (674)
T cd01378 395 KLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPH 474 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999 8999999999999999 99999999999999999999
Q ss_pred ccCCCCCCCCcEEEeccceeeecccchhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCcCCCCCCcchhHHHHHHHH
Q 000510 535 FSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQ 614 (1456)
Q Consensus 535 f~~p~~~~~~F~I~Hyag~V~Y~~~~fleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~ 614 (1456)
+.+|+..+..|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+......+ ..+.+||+++||.||+
T Consensus 475 ~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~-~~~~~tv~~~fk~qL~ 553 (674)
T cd01378 475 SDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDADS-KKRPTTAGFKIKTSAN 553 (674)
T ss_pred CCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcccccccc-cCCCCcHHHHHHHHHH
Confidence 988888889999999999999999999999999999999999999999999999985433222 2356899999999999
Q ss_pred HHHHHHhccCCeEEeecCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhCCCCccChhhHHhhhhccccCcc-cCCCc
Q 000510 615 SLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL-EGNYD 693 (1456)
Q Consensus 615 ~Lm~~l~~t~~h~IrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~-~~~~~ 693 (1456)
.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|.|||+|++|.+|++||++|+|... ....|
T Consensus 554 ~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~ 633 (674)
T cd01378 554 ALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKTWPTWPGD 633 (674)
T ss_pred HHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998743 23468
Q ss_pred hHHHHHHHHHHhCC--CCeeeccceeecccc-hhhHHHHHH
Q 000510 694 DQVACQMILDKKGL--KGYQIGKTKVFLRAG-QMAELDARR 731 (1456)
Q Consensus 694 ~~~~~~~ll~~~~~--~~~qiGkTkVFlr~~-~~~~Le~~r 731 (1456)
++++|+.||+.+++ ++|++|+||||||+| +++.||..|
T Consensus 634 ~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 634 AKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 99999999999876 489999999999998 689999876
No 11
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=6.5e-183 Score=1708.92 Aligned_cols=661 Identities=41% Similarity=0.714 Sum_probs=618.2
Q ss_pred CCCCcccCCCCCChhhHHHHHHHHhccCccccccCceEEEeCCCcCCCCCCCHHHHHHhhcCCcCCCCchhhhHHHHHHH
Q 000510 62 GGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYR 141 (1456)
Q Consensus 62 ~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~ 141 (1456)
+|||||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+| +|+++.++.|++++.+++|||||+||++||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~ 79 (677)
T cd01387 1 DGVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFP-IYGPEQVQQYAGRALGENPPHLFAIANLAFA 79 (677)
T ss_pred CCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Confidence 389999999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCcccHHHHHhhcchHHHhccCccccCCCCCCccccEEEE
Q 000510 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 221 (1456)
Q Consensus 142 ~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l 221 (1456)
.|...++||||||||||||||||++|++|+||+.++++. ...|+++|+++||||||||||||++||||||||||++|
T Consensus 80 ~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l 156 (677)
T cd01387 80 KMLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGG---SAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEI 156 (677)
T ss_pred HHHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCC---cchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEE
Confidence 999999999999999999999999999999999987532 24699999999999999999999999999999999999
Q ss_pred EecCCCccceeeeeeeccCCccccccCCCCCcceeehhccc-CCHHHHhhcCCCCCCCCccccCCCccccCCCCcHHHHH
Q 000510 222 QFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 300 (1456)
Q Consensus 222 ~f~~~g~i~ga~i~tyLLEksRvv~q~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f~ 300 (1456)
+|+ +|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|..+++++|+++|.
T Consensus 157 ~f~-~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~ 235 (677)
T cd01387 157 FLE-GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFR 235 (677)
T ss_pred Eec-CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHH
Confidence 995 7999999999999999999999999999999999999 78899999999999999999999999999999999999
Q ss_pred HHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCc--cccccccCccchHHHHHHHHhcCCCHHHHHHhhheeEEE
Q 000510 301 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE--IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMV 378 (1456)
Q Consensus 301 ~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 378 (1456)
.|+.||+.|||+++++.+||+|||||||||||+|..... .+.+.+.+ ...++.||+||||++++|.++||++++.
T Consensus 236 ~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~lt~~~~~ 312 (677)
T cd01387 236 RLLAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVS---AREIQAVAELLQISPEGLQKAITFKVTE 312 (677)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhccCeEE
Confidence 999999999999999999999999999999999987432 12233333 2469999999999999999999999999
Q ss_pred eCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEeccccCCCCCCCChhHHHhhhhhhHH
Q 000510 379 TPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKL 458 (1456)
Q Consensus 379 ~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNEkL 458 (1456)
+++|.+.+|+++++|.++||||||+||++||+|||.+||.+|... ....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkL 391 (677)
T cd01387 313 TRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT-QDTLSIAILDIYGFEDLSFNSFEQLCINYANENL 391 (677)
T ss_pred eCCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEecCccccCCCCCHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999864 4567999999999999999999999999999999
Q ss_pred HhhHhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCccccccchhccCCCCchHHHHHHHHHHhcCCCCccCC
Q 000510 459 QQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKP 538 (1456)
Q Consensus 459 q~~f~~~~f~~eq~ey~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~f~~p 538 (1456)
||+||+|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||+||||||++|+|||++|++|++..+++|+.|.+|
T Consensus 392 Q~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~ 471 (677)
T cd01387 392 QYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKP 471 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEeccceeeecccchhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCC-----------cCCCCCCcchhH
Q 000510 539 KLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEE-----------SSKSSKFSSIGS 607 (1456)
Q Consensus 539 ~~~~~~F~I~Hyag~V~Y~~~~fleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~-----------~~~~~~~~tv~~ 607 (1456)
+.....|+|+||||+|+|+++||++||+|.++++++++|.+|++++|+.+|+..... .++..+.+||++
T Consensus 472 ~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~s~~~~~~~~~tv~~ 551 (677)
T cd01387 472 KMPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRLGKSSSGTRLYKAHTVAA 551 (677)
T ss_pred CCCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccccCCCccccccCCCcHHH
Confidence 988889999999999999999999999999999999999999999999999653210 011224579999
Q ss_pred HHHHHHHHHHHHHhccCCeEEeecCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhCCCCccChhhHHhhhhccccCc
Q 000510 608 RFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEV 687 (1456)
Q Consensus 608 ~f~~~l~~Lm~~l~~t~~h~IrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~ 687 (1456)
+|+.||+.||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|+|..
T Consensus 552 ~f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~ 631 (677)
T cd01387 552 KFQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALK 631 (677)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccCCCchHHHHHHHHHHhCC--CCeeeccceeecccchhhHHHHHH
Q 000510 688 LEGNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1456)
Q Consensus 688 ~~~~~~~~~~~~~ll~~~~~--~~~qiGkTkVFlr~~~~~~Le~~r 731 (1456)
.....+.+..+..++..+++ +.||+|+||||||++++..||..|
T Consensus 632 ~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 632 LARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred ccCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 44333334455788888775 479999999999999999999876
No 12
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=1.6e-182 Score=1708.88 Aligned_cols=664 Identities=41% Similarity=0.678 Sum_probs=622.9
Q ss_pred CCCCcccCCCCCChhhHHHHHHHHhccCccccccCceEEEeCCCcCCCCCCCHHHHHHhhcCC-cCCCCchhhhHHHHHH
Q 000510 62 GGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAA-FGELSPHVFAVGDAAY 140 (1456)
Q Consensus 62 ~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~-~~~~~PHifaiA~~Ay 140 (1456)
.++|||+.|++|||++|||+|+.||..++||||+|++|||||||+.+| +|+++.++.|+++. .+++|||||+||++||
T Consensus 7 ~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay 85 (692)
T cd01385 7 REYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLP-IYNPKYVRLYENQQRLGKLPPHIFAIADVAY 85 (692)
T ss_pred CCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCC-CCCHHHHHHHhcCCCcCCCCCCHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999998 99999999999887 7899999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCcccHHHHHhhcchHHHhccCccccCCCCCCccccEEE
Q 000510 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 220 (1456)
Q Consensus 141 ~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~ 220 (1456)
+.|..+++||||||||||||||||++|++|+||+.+++.. ..+..|+++|+++||||||||||||+|||||||||||++
T Consensus 86 ~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~-~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~ 164 (692)
T cd01385 86 YNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKG-YAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQ 164 (692)
T ss_pred HHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCC-ccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEE
Confidence 9999999999999999999999999999999999997533 234679999999999999999999999999999999999
Q ss_pred EEecCCCccceeeeeeeccCCccccccCCCCCcceeehhccc-CCHHHHhhcCCCCCCCCccccCCCccccCCCCcHHHH
Q 000510 221 IQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEY 299 (1456)
Q Consensus 221 l~f~~~g~i~ga~i~tyLLEksRvv~q~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f 299 (1456)
|+|+.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++++.|.++.+|+||++++|...+++||+.+|
T Consensus 165 l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f 244 (692)
T cd01385 165 VNYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEF 244 (692)
T ss_pred EEECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999 7889999999988889999999998877899999999
Q ss_pred HHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCc---cccccccCccchHHHHHHHHhcCCCHHHHHHhhheeE
Q 000510 300 LATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE---IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRV 376 (1456)
Q Consensus 300 ~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~ 376 (1456)
..|+.||+.|||+++++..||+|||||||||||+|.+..+ .+++.+.+ ...+..||.||||++++|.++||+++
T Consensus 245 ~~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~ 321 (692)
T cd01385 245 ERLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGN---PEVVDLLSQLLKVKRETLMEALTKKR 321 (692)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCC---HHHHHHHHHHhCCCHHHHHHHhccCe
Confidence 9999999999999999999999999999999999987432 33444443 34799999999999999999999999
Q ss_pred EEeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCC---CCeEEEEeccccCCCCCC-CChhHHHhh
Q 000510 377 MVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPD---SKSIIGVLDIYGFESFKC-NSFEQFCIN 452 (1456)
Q Consensus 377 ~~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~---~~~~IgiLDi~GFE~f~~-NsfeQlcIN 452 (1456)
+.+++|.+++|++++||..+||||||+||++||+|||.+||.+|.+... ...+||||||||||+|+. |||||||||
T Consensus 322 ~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcIN 401 (692)
T cd01385 322 TVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCIN 401 (692)
T ss_pred EEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhhH
Confidence 9999999999999999999999999999999999999999999986432 468999999999999999 999999999
Q ss_pred hhhhHHHhhHhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCccccccchhccCCCCchHHHHHHHHHHhcCC
Q 000510 453 FTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKN 532 (1456)
Q Consensus 453 yaNEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~ 532 (1456)
||||||||+||+|||+.||++|.+|||+|.+|+|.||++|||||++||.|||++|||||++|+|||++|++|+++.+++|
T Consensus 402 yaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~~ 481 (692)
T cd01385 402 YANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKDN 481 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCcEEEeccceeeecccchhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCcC---------CCCCCc
Q 000510 533 NRFSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESS---------KSSKFS 603 (1456)
Q Consensus 533 ~~f~~p~~~~~~F~I~Hyag~V~Y~~~~fleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~---------~~~~~~ 603 (1456)
+.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+..+.... ++.+.+
T Consensus 482 ~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~ 561 (692)
T cd01385 482 KYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRWAVLRAAFRAMAAP 561 (692)
T ss_pred CCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCcccccccccccccccCccCC
Confidence 99999988888999999999999999999999999999999999999999999999976432211 122347
Q ss_pred chhHHHHHHHHHHHHHHhccCCeEEeecCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhCCCCccChhhHHhhhhcc
Q 000510 604 SIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGIL 683 (1456)
Q Consensus 604 tv~~~f~~~l~~Lm~~l~~t~~h~IrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l 683 (1456)
||+++|+.||++||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||++.|||+|++|.+|+.||++|
T Consensus 562 tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~L 641 (692)
T cd01385 562 SVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRIL 641 (692)
T ss_pred cHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccCCCchHHHHHHHHHHhCCC--CeeeccceeecccchhhHHHHHHHh
Q 000510 684 APEVLEGNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDARRAE 733 (1456)
Q Consensus 684 ~~~~~~~~~~~~~~~~~ll~~~~~~--~~qiGkTkVFlr~~~~~~Le~~r~~ 733 (1456)
+|... .+.++.|+.||+.++++ +|++|+||||||+++++.||....+
T Consensus 642 ~~~~~---~~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~~ 690 (692)
T cd01385 642 LPKGA---QSCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLHR 690 (692)
T ss_pred Ccccc---cchHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHhh
Confidence 98743 23467899999998875 8999999999999999999986543
No 13
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=3.3e-182 Score=1711.97 Aligned_cols=664 Identities=42% Similarity=0.719 Sum_probs=619.2
Q ss_pred CCCCCcccCCCCCChhhHHHHHHHHhccCccccccCceEEEeCCCcCCCCCCCHHHHHHhhcCCcCCCCchhhhHHHHHH
Q 000510 61 AGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAY 140 (1456)
Q Consensus 61 ~~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay 140 (1456)
+.++|||+.|++|||++|||+|+.||..+.||||+|+||||||||+.+|++|+++.+..|+++..+++|||||+||+.||
T Consensus 3 ~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay 82 (717)
T cd01382 3 KKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAY 82 (717)
T ss_pred CCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCcccHHHHHhhcchHHHhccCccccCCCCCCccccEEE
Q 000510 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 220 (1456)
Q Consensus 141 ~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~ 220 (1456)
++|...++||||||||||||||||++|+||+|||.+++++ ..|+++|+++||||||||||||+|||||||||||++
T Consensus 83 ~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~ 158 (717)
T cd01382 83 RDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSG----QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVE 158 (717)
T ss_pred HHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCC----ccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEE
Confidence 9999999999999999999999999999999999986542 579999999999999999999999999999999999
Q ss_pred EEecCCCccceeeeeeeccCCccccccCCCCCcceeehhccc-CCHHHHhhcCCCCCCCCccccCCC-------------
Q 000510 221 IQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSN------------- 286 (1456)
Q Consensus 221 l~f~~~g~i~ga~i~tyLLEksRvv~q~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~------------- 286 (1456)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||+++.
T Consensus 159 l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~ 238 (717)
T cd01382 159 IHFNEKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQI 238 (717)
T ss_pred EEECCCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCcccccccccccccc
Confidence 999999999999999999999999999999999999999999 788999999999999999999753
Q ss_pred -------------ccccCCCCcHHHHHHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCc-cccccccCccchH
Q 000510 287 -------------CYELDGVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE-IDSSVIKDEKSRF 352 (1456)
Q Consensus 287 -------------~~~~~~~~d~~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~-~~~~~~~~~~~~~ 352 (1456)
|...+++||+++|..|+.||+.|||+++++..||+|||||||||||+|.+... .+.+.+. ..+..
T Consensus 239 ~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~-~~~~~ 317 (717)
T cd01382 239 LQNRKSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVK-NQSEQ 317 (717)
T ss_pred cccccccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceec-CCCHH
Confidence 33467899999999999999999999999999999999999999999987432 2223332 23345
Q ss_pred HHHHHHHhcCCCHHHHHHhhheeEEE-----eCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCC
Q 000510 353 HLNMTAELLRCDAQSLEDALIKRVMV-----TPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSK 427 (1456)
Q Consensus 353 ~l~~~a~LLgv~~~~L~~~l~~~~~~-----~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~ 427 (1456)
.++.||.||||++++|.++||+|++. ++++.+.+|++++||..+||+|||+||++||+|||.+||.++..+. ..
T Consensus 318 ~l~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~-~~ 396 (717)
T cd01382 318 SLEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFET-SS 396 (717)
T ss_pred HHHHHHHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CC
Confidence 79999999999999999999999998 7889999999999999999999999999999999999999997653 56
Q ss_pred eEEEEeccccCCCCCCCChhHHHhhhhhhHHHhhHhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCcccccc
Q 000510 428 SIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALL 507 (1456)
Q Consensus 428 ~~IgiLDi~GFE~f~~NsfeQlcINyaNEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lL 507 (1456)
.+||||||||||+|+.|||||||||||||||||+||++||+.||++|++|||+|++|+|.||++|||||++||.|||++|
T Consensus 397 ~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lL 476 (717)
T cd01382 397 NFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDIL 476 (717)
T ss_pred cEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccCCCCchHHHHHHHHHHhcCCCCccCCCCC----------CCCcEEEeccceeeecccchhhhcccchHHHHHHHH
Q 000510 508 DEACMFPKSTHETFSQKLCQTFAKNNRFSKPKLS----------RTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALL 577 (1456)
Q Consensus 508 dee~~~p~~~d~~~~~kl~~~~~~~~~f~~p~~~----------~~~F~I~Hyag~V~Y~~~~fleKN~D~~~~~~~~ll 577 (1456)
||||++|++||++|++||++.+++|++|..|+.+ ...|+|+||||+|+|+++||++||+|.++++++++|
T Consensus 477 Dee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ll 556 (717)
T cd01382 477 DEENRLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLI 556 (717)
T ss_pred HHHhcCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHHH
Confidence 9999999999999999999999999998877532 357999999999999999999999999999999999
Q ss_pred HhcchhhHhhcCCCCCCCc---C--CCCCCcchhHHHHHHHHHHHHHHhccCCeEEeecCCCCCCCCCCCchhhHHHHhh
Q 000510 578 TAAKCSFVAGLFPPLPEES---S--KSSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLR 652 (1456)
Q Consensus 578 ~~S~~~~v~~lf~~~~~~~---~--~~~~~~tv~~~f~~~l~~Lm~~l~~t~~h~IrCIkPN~~~~p~~fd~~~v~~QLr 652 (1456)
++|+++||+.||+...... . +..++.||+++||.||+.||++|++|+||||||||||+.++|+.||..+|++|||
T Consensus 557 ~~S~n~~i~~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr 636 (717)
T cd01382 557 CESKDKFLRSLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQLQ 636 (717)
T ss_pred HhCchHHHHHHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHHHH
Confidence 9999999999997643211 1 1225679999999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHhhCCCCccChhhHHhhhhccccCcccCCCchHHHHHHHHHHhCCC--CeeeccceeecccchhhHHHHH
Q 000510 653 CGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDAR 730 (1456)
Q Consensus 653 ~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~ll~~~~~~--~~qiGkTkVFlr~~~~~~Le~~ 730 (1456)
|+||||+|||+|+|||+|++|.+|++||+.|+|.... ..|+++.|+.||+.++++ +|++|+||||||+|+++.||++
T Consensus 637 ~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~-~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~~ 715 (717)
T cd01382 637 CSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLV-RLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQI 715 (717)
T ss_pred hcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccC-CCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHHH
Confidence 9999999999999999999999999999999886543 358899999999998874 8999999999999999999986
Q ss_pred H
Q 000510 731 R 731 (1456)
Q Consensus 731 r 731 (1456)
.
T Consensus 716 ~ 716 (717)
T cd01382 716 M 716 (717)
T ss_pred h
Confidence 3
No 14
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.4e-180 Score=1549.07 Aligned_cols=789 Identities=38% Similarity=0.649 Sum_probs=710.9
Q ss_pred ccCcEEEEeCCCCCeEeEEEEEEcCCeEEEEe--CCCcEEEEecccccCCCCCCCCCCCCcccCCCCCChhhHHHHHHHH
Q 000510 8 IVGSHVWVEDPVLAWINGEVMWINGQEVHVNC--TNGKKVVTSVSKVFPEDTEAPAGGVDDMTKLSYLHEPGVLQNLATR 85 (1456)
Q Consensus 8 ~~g~~vwv~~~~~~w~~~~v~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~l~e~~vL~~L~~R 85 (1456)
.-|..||++|+.++|+.|.|+++..+..+++. ..|.+++.--+++++...+ ++..|||-|.|-||||+.+|+|++.|
T Consensus 2 e~gr~VWi~d~tdGf~~~rI~di~~~~ftl~~~d~k~~t~~~~~edv~a~eeD-~~k~veDNC~Lm~LNEATlL~Nik~R 80 (1259)
T KOG0163|consen 2 EDGRLVWIRDATDGFIAGRITDIGAKGFTLTPLDRKGPTVTRHFEDVHACEED-SPKDVEDNCELMHLNEATLLNNIKLR 80 (1259)
T ss_pred CCCceEeecccccchhheeeeeecCCceEEeecccCCcceeehhhhccccccc-cccccccccceeeccHHHHhhhhhhh
Confidence 45899999999999999999999988888864 4677888888888887544 56789999999999999999999999
Q ss_pred hccCccccccCceEEEeCCCcCCCCCCCHHHHHHhhcCCcCCCCchhhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhh
Q 000510 86 YELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTET 165 (1456)
Q Consensus 86 y~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~ 165 (1456)
|..|.||||+.+||||||||..+|.+|+++.|..|+|+.+|.+||||||||+.|||.|..-+.+|||||||||||||||+
T Consensus 81 Y~k~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEs 160 (1259)
T KOG0163|consen 81 YYKDKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTES 160 (1259)
T ss_pred hccCchhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHhhcchHHHhccCccccCCCCCCccccEEEEEecCCCccceeeeeeeccCCcccc
Q 000510 166 TKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLERSRVC 245 (1456)
Q Consensus 166 ~k~~~~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l~f~~~g~i~ga~i~tyLLEksRvv 245 (1456)
+|++++||+.--|+ +..|+++||++||||||||||||+||+||||||||++|||+.+|.++|+-|..|||||||||
T Consensus 161 tK~vLrYLces~gs----ag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC 236 (1259)
T KOG0163|consen 161 TKAVLRYLCESWGS----AGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRIC 236 (1259)
T ss_pred HHHHHHHHHhccCC----CCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHH
Confidence 99999999986544 35799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcceeehhccc-CCHHHHhhcCCCCCCCCccccCCC--------------------------ccccCCCCcHHH
Q 000510 246 QISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSN--------------------------CYELDGVSDAHE 298 (1456)
Q Consensus 246 ~q~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~--------------------------~~~~~~~~d~~~ 298 (1456)
.|+.+|||||||||||| ++++.++.|.|+.|++|+||+.|- ...-+-+||..+
T Consensus 237 ~Qaa~ERNYHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~d 316 (1259)
T KOG0163|consen 237 RQAAEERNYHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQD 316 (1259)
T ss_pred HhhhcccchhHHHHHHcCCCHHHHHHhccCCchhhhHHhcchhhhccCcchhhcCcccccCccccccCcccCcccccHHH
Confidence 99999999999999999 889999999999999999998531 111223689999
Q ss_pred HHHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCc--cccccccCccchHHHHHHHHhcCCCHHHHHHhhheeE
Q 000510 299 YLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE--IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRV 376 (1456)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~ 376 (1456)
|..+..||..+|++++|...||+++|||||||||+|++..+ ..+|.+.+ .+...|..+|+|||+|.++|...||.|.
T Consensus 317 F~rl~~Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n-~seqsL~~~a~LLGld~~elr~~L~aRv 395 (1259)
T KOG0163|consen 317 FHRLEKALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSN-GSEQSLTIAAELLGLDQTELRTGLCARV 395 (1259)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceeccc-CchhhHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997542 23444543 4566899999999999999999999998
Q ss_pred EEe-----CCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEeccccCCCCCCCChhHHHh
Q 000510 377 MVT-----PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCI 451 (1456)
Q Consensus 377 ~~~-----~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcI 451 (1456)
|.+ +|..|.+||.+.+|..+||||||++|++||||||.+||+++.-. .+..|||||||.|||-|.+||||||||
T Consensus 396 Mqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe-~St~fiGVLDiAGFEyf~~NSFEQFCI 474 (1259)
T KOG0163|consen 396 MQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFE-KSTFFIGVLDIAGFEYFAVNSFEQFCI 474 (1259)
T ss_pred HHhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccccc-cccceeEEEeeccceeeecccHHHHHH
Confidence 864 34678999999999999999999999999999999999999654 478899999999999999999999999
Q ss_pred hhhhhHHHhhHhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCccccccchhccCCCCchHHHHHHHHHHhcC
Q 000510 452 NFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAK 531 (1456)
Q Consensus 452 NyaNEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~ 531 (1456)
||+|||||++||+.+++.|||.|++||++...|+|.|||+||+|||.|..|||+|||||..+|+++++.|....++.+++
T Consensus 475 NyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~ 554 (1259)
T KOG0163|consen 475 NYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKN 554 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCC----------CCCcEEEeccceeeecccchhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCcCCC--
Q 000510 532 NNRFSKPKLS----------RTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKS-- 599 (1456)
Q Consensus 532 ~~~f~~p~~~----------~~~F~I~Hyag~V~Y~~~~fleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~-- 599 (1456)
|-+...||.+ ...|.|+||||.|+|++..|+|||.|.|...+..|+..|+++|+.+||+.....+.++
T Consensus 555 HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~S~s~t~a~~~~ 634 (1259)
T KOG0163|consen 555 HFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLVSLFPSGSSTSAKQTR 634 (1259)
T ss_pred ceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHHHHccCCCCCcccccc
Confidence 9888878643 3589999999999999999999999999999999999999999999999764433221
Q ss_pred --CCCcchhHHHHHHHHHHHHHHhccCCeEEeecCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhCCCCccChhhHH
Q 000510 600 --SKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFV 677 (1456)
Q Consensus 600 --~~~~tv~~~f~~~l~~Lm~~l~~t~~h~IrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~ 677 (1456)
-++-|||++||.||..||+.|++|..|||||||||..+.|+.||...++.||.|+|+...++++..|||+|..|.|.+
T Consensus 635 gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dLY 714 (1259)
T KOG0163|consen 635 GKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADLY 714 (1259)
T ss_pred ceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHHH
Confidence 267799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCcccCCCchHHHHHHHHHHhCCC--CeeeccceeecccchhhHHHHHHHhhhhhhHHHHhhhhhchHHHHHH
Q 000510 678 NRFGILAPEVLEGNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIARKEF 755 (1456)
Q Consensus 678 ~ry~~l~~~~~~~~~~~~~~~~~ll~~~~~~--~~qiGkTkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~l~Rk~~ 755 (1456)
.-|+-.+|+.+. ..|++-.|+.+..++|++ +|++|.||||||+|.++..+++........+..|++ +..|+.|.+|
T Consensus 715 amYkk~lPpkLa-rLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv~k-Vn~WLv~sRW 792 (1259)
T KOG0163|consen 715 AMYKKVLPPKLA-RLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELVAK-VNKWLVRSRW 792 (1259)
T ss_pred HHHHhhCCHhhh-cCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHHHHHH-HHHHHHHhHH
Confidence 999988887654 469999999999999986 899999999999999999999888777776666654 6789999998
Q ss_pred HHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 000510 756 ILLRNAAVILQSFLRGEMARKLYEQLRREAAALKIQTNFRAYVAQRSYLTVRSSAMIL 813 (1456)
Q Consensus 756 ~~~r~aai~IQa~~Rg~laRk~~~~~r~~~AAi~IQ~~~R~~~aRk~~~~~r~a~i~i 813 (1456)
++...++..+-..-- +- .-|..+.+++|+.+|||++|+++......+.++
T Consensus 793 kk~q~~a~sVIKLkN----kI----~yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~ 842 (1259)
T KOG0163|consen 793 KKSQYGALSVIKLKN----KI----IYRAECVLKAQRIARGYLARKRHRPRIAGIRKI 842 (1259)
T ss_pred HHhhhhhhheeehhh----HH----HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Confidence 877655544322110 11 123467889999999999999987655444333
No 15
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=1e-181 Score=1564.66 Aligned_cols=728 Identities=40% Similarity=0.687 Sum_probs=675.1
Q ss_pred CCCCCcccCCCCCChhhHHHHHHHHhccCccccccCceEEEeCCCcCCCCCCCHHHHHHhhcCCcCCCCchhhhHHHHHH
Q 000510 61 AGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAY 140 (1456)
Q Consensus 61 ~~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay 140 (1456)
..||+|+.-|+.+.|++++.||+.||..+.||||+|+|||+||||+.|+ ||++++|++|+|....+.|||+||||+.||
T Consensus 7 ~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~-IYg~~ti~kYkgre~yE~~PHlfAiad~aY 85 (1001)
T KOG0164|consen 7 EVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLN-IYGPETIEKYKGREFYERPPHLFAIADAAY 85 (1001)
T ss_pred ccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcC-ccCHHHHHHhCCeeecccCchHHHhHHHHH
Confidence 4689999999999999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCC-CcccHHHHHhhcchHHHhccCccccCCCCCCccccEE
Q 000510 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV-EGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1456)
Q Consensus 141 ~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~-~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~ 219 (1456)
+.|.+.++||||+|||||||||||++|+||+|+|.+.+.+.. +-..|.+++|+|||||||||||||.|||||||||||+
T Consensus 86 rslk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYM 165 (1001)
T KOG0164|consen 86 RSLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYM 165 (1001)
T ss_pred HHHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhcce
Confidence 999999999999999999999999999999999999865432 1246778999999999999999999999999999999
Q ss_pred EEEecCCCccceeeeeeeccCCccccccCCCCCcceeehhccc-CCHHHHhhcCCC-CCCCCccccCCCccccCCCCcHH
Q 000510 220 EIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLG-SPKSFHYLNQSNCYELDGVSDAH 297 (1456)
Q Consensus 220 ~l~f~~~g~i~ga~i~tyLLEksRvv~q~~~ErnfHiFYql~~-~~~~~~~~~~l~-~~~~~~yl~~~~~~~~~~~~d~~ 297 (1456)
.|.||-.|..+|+.|.+|||||||||.|.+|||||||||||+. +.+.+...|+|. ++..|+||+|| |..+.+++|+.
T Consensus 166 DInFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~~ 244 (1001)
T KOG0164|consen 166 DINFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDAS 244 (1001)
T ss_pred eeeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccHH
Confidence 9999999999999999999999999999999999999999999 777888999995 79999999998 88899999999
Q ss_pred HHHHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCccccccccCccchHHHHHHHHhcCCCHHHHHHhhheeEE
Q 000510 298 EYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVM 377 (1456)
Q Consensus 298 ~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~ 377 (1456)
+|..++.||.++||+++|++++|+|+|||||||||+|.++. |++.+... ..+..+|+||++.+++|+++||+|++
T Consensus 245 dfk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~e--d~~~~~~~---~~l~~~aell~v~~del~~aL~~Rtv 319 (1001)
T KOG0164|consen 245 DFKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNE--DSSGIVNG---AQLKYIAELLSVTGDELERALTSRTV 319 (1001)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecC--cccccchh---HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999864 44444433 47999999999999999999999999
Q ss_pred EeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCC-----CCCeEEEEeccccCCCCCCCChhHHHhh
Q 000510 378 VTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDP-----DSKSIIGVLDIYGFESFKCNSFEQFCIN 452 (1456)
Q Consensus 378 ~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~-----~~~~~IgiLDi~GFE~f~~NsfeQlcIN 452 (1456)
.+++|.+.++++++||.++||||||++|+|||+|||.+||.+|.... .....||||||||||+|+.|||||||||
T Consensus 320 aa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcIN 399 (1001)
T KOG0164|consen 320 AAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCIN 399 (1001)
T ss_pred HhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999996431 2358999999999999999999999999
Q ss_pred hhhhHHHhhHhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCccccccchhccCCC-CchHHHHHHHHHHhcC
Q 000510 453 FTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPK-STHETFSQKLCQTFAK 531 (1456)
Q Consensus 453 yaNEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~-~~d~~~~~kl~~~~~~ 531 (1456)
|+||||||.|.+-++|.|||||++|||+|..|+|.+|.-++||+|.+..|||++|||||+.|+ -||.+|++||.+.+++
T Consensus 400 YCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~ 479 (1001)
T KOG0164|consen 400 YCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKK 479 (1001)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999997 6999999999999999
Q ss_pred CCCccCCC-------CCCCCcEEEeccceeeecccchhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCcCCC-CCCc
Q 000510 532 NNRFSKPK-------LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKS-SKFS 603 (1456)
Q Consensus 532 ~~~f~~p~-------~~~~~F~I~Hyag~V~Y~~~~fleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~-~~~~ 603 (1456)
|++|..-+ +.-.+|.|.||||+|+|++.||++||+|.|..|+..+|.+|+++++++||+....+.... .+.+
T Consensus 480 H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~~~~~tkRP~ 559 (1001)
T KOG0164|consen 480 HPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPDIAEVTKRPP 559 (1001)
T ss_pred CCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChhHHhhhcCCC
Confidence 99996432 234689999999999999999999999999999999999999999999998754332222 3668
Q ss_pred chhHHHHHHHHHHHHHHhccCCeEEeecCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhCCCCccChhhHHhhhhcc
Q 000510 604 SIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGIL 683 (1456)
Q Consensus 604 tv~~~f~~~l~~Lm~~l~~t~~h~IrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l 683 (1456)
|+|++||.|+..||++|.+-+|+||||||||+.|.|+.||...|.+|.++.|+||.+|++|+||.+|.+|+.|+.||+++
T Consensus 560 Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL~RYKmi 639 (1001)
T KOG0164|consen 560 TAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFLLRYKMI 639 (1001)
T ss_pred cHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccc--CCCchHHHHHHHHHHhCC-CCeeeccceeecccch-hhHHHHHHHhhhhhhHHHHhhhhhchHHHHHHHHhh
Q 000510 684 APEVLE--GNYDDQVACQMILDKKGL-KGYQIGKTKVFLRAGQ-MAELDARRAEVLGNAARKIQRQTRTYIARKEFILLR 759 (1456)
Q Consensus 684 ~~~~~~--~~~~~~~~~~~ll~~~~~-~~~qiGkTkVFlr~~~-~~~Le~~r~~~l~~aa~~IQ~~~R~~l~Rk~~~~~r 759 (1456)
++..++ ...+.++.|+.|++..|. +++.+|+||||+|... +-.||..|.+.+...++.||+.||||++|.+|++++
T Consensus 640 ~~~TWPn~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R~ry~rmk 719 (1001)
T KOG0164|consen 640 CESTWPNWRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLARQRYRRMK 719 (1001)
T ss_pred CcccCCCCCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987543 224578999999999987 4899999999999865 578999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 000510 760 NAAVILQSFLRGEMARKLYEQLRREAAALKIQTNFRAYVAQRSYLT 805 (1456)
Q Consensus 760 ~aai~IQa~~Rg~laRk~~~~~r~~~AAi~IQ~~~R~~~aRk~~~~ 805 (1456)
.+++.|+ |||.+. ...++..||+.+||+..++.|.+
T Consensus 720 a~~~ii~-wyR~~K---------~ks~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 720 ASATIIR-WYRRYK---------LKSYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHH-HHHHHH---------HHHHHHHHHHHHHhhhhccccCC
Confidence 9999998 787432 22567789999999999998864
No 16
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=7.2e-180 Score=1672.36 Aligned_cols=639 Identities=39% Similarity=0.698 Sum_probs=602.2
Q ss_pred CCCcccCCCCCChhhHHHHHHHHhccCccccccCceEEEeCCCcCCCCCCCHHHHHHhhcCCcCCCCchhhhHHHHHHHH
Q 000510 63 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRA 142 (1456)
Q Consensus 63 ~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 142 (1456)
.+|||+.|++|||++|||+|+.||..+.||||+|++|||||||+.+| +|+++.+..|+++..+++|||||+||+.||+.
T Consensus 1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~-ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~ 79 (653)
T cd01379 1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLG-LYTTQHSRLYTGQKRSSNPPHIFAIADAAYQS 79 (653)
T ss_pred CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCcccHHHHHhhcchHHHhccCccccCCCCCCccccEEEEE
Q 000510 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 222 (1456)
Q Consensus 143 m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l~ 222 (1456)
|...++||||||||||||||||++|++|+||+.+++.. ..+|+++|+++||||||||||||+|||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~ 156 (653)
T cd01379 80 LVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKAN---NRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMK 156 (653)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCC---CccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999987532 357999999999999999999999999999999999999
Q ss_pred ecCCCccceeeeeeeccCCccccccCCCCCcceeehhccc-CCHHHH-hhcCCCCCCCCccccCCCccccCCCC----cH
Q 000510 223 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDI-AKYKLGSPKSFHYLNQSNCYELDGVS----DA 296 (1456)
Q Consensus 223 f~~~g~i~ga~i~tyLLEksRvv~q~~~ErnfHiFYql~~-~~~~~~-~~~~l~~~~~~~yl~~~~~~~~~~~~----d~ 296 (1456)
|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++ +.|+|.++..|+||++++|..+++++ |+
T Consensus 157 f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~ 236 (653)
T cd01379 157 FTRSGAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYK 236 (653)
T ss_pred ECCCCcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHH
Confidence 9999999999999999999999999999999999999999 454554 78999999999999999987777775 46
Q ss_pred HHHHHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCc---cccccccCccchHHHHHHHHhcCCCHHHHHHhhh
Q 000510 297 HEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE---IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALI 373 (1456)
Q Consensus 297 ~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~ 373 (1456)
++|..|+.||..|||+++++..||+|||||||||||+|.+... .+.+.+.+ ..+++.||+||||+.++|.++||
T Consensus 237 ~~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~---~~~l~~~A~LLgv~~~~L~~~L~ 313 (653)
T cd01379 237 DQFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSN---VAALENAASLLCIRSDELQEALT 313 (653)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhc
Confidence 8999999999999999999999999999999999999986432 22333333 35799999999999999999999
Q ss_pred eeEEEeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCC-----CCeEEEEeccccCCCCCCCChhH
Q 000510 374 KRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPD-----SKSIIGVLDIYGFESFKCNSFEQ 448 (1456)
Q Consensus 374 ~~~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~-----~~~~IgiLDi~GFE~f~~NsfeQ 448 (1456)
++++.++++.+++|+++++|..+||||||+||++||+|||.+||.+|.++.. ...+||||||||||+|+.|||||
T Consensus 314 ~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQ 393 (653)
T cd01379 314 SHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQ 393 (653)
T ss_pred ccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999986543 45799999999999999999999
Q ss_pred HHhhhhhhHHHhhHhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCccccccchhccCCCCchHHHHHHHHHH
Q 000510 449 FCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQT 528 (1456)
Q Consensus 449 lcINyaNEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~ 528 (1456)
||||||||||||+||++||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+|||++|++|++.+
T Consensus 394 LcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~ 473 (653)
T cd01379 394 LCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDN 473 (653)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCccCCCCCCCCcEEEeccceeeecccchhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCcCCCCCCcchhHH
Q 000510 529 FAKNNRFSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSR 608 (1456)
Q Consensus 529 ~~~~~~f~~p~~~~~~F~I~Hyag~V~Y~~~~fleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~ 608 (1456)
++ ++.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++| +||+++
T Consensus 474 ~~-~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S----------------------~tv~~~ 530 (653)
T cd01379 474 LK-SKFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS----------------------QTVASY 530 (653)
T ss_pred cC-CCCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC----------------------cHHHHH
Confidence 85 5678899888889999999999999999999999999999999999887 589999
Q ss_pred HHHHHHHHHHHHhccCCeEEeecCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhCCCCccChhhHHhhhhccccCcc
Q 000510 609 FKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL 688 (1456)
Q Consensus 609 f~~~l~~Lm~~l~~t~~h~IrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~ 688 (1456)
||.||++||++|++|+||||||||||+.|+|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++...
T Consensus 531 fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~~~~ 610 (653)
T cd01379 531 FRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAYRFE 610 (653)
T ss_pred HHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997754
Q ss_pred cCCCchHHHHHHHHHHhCCCCeeeccceeecccchhhHHHHHH
Q 000510 689 EGNYDDQVACQMILDKKGLKGYQIGKTKVFLRAGQMAELDARR 731 (1456)
Q Consensus 689 ~~~~~~~~~~~~ll~~~~~~~~qiGkTkVFlr~~~~~~Le~~r 731 (1456)
....+.++.|+.||..++.++|++||||||||+++++.||.+|
T Consensus 611 ~~~~~~~~~~~~il~~~~~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 611 EEPVSSPESCALILEKAKLDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred cccCChHHHHHHHHHhCCCCCEEecceEEEEecCHHHHHHhcC
Confidence 4445789999999999999999999999999999999999875
No 17
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=1.5e-178 Score=1680.85 Aligned_cols=668 Identities=53% Similarity=0.893 Sum_probs=631.8
Q ss_pred CCCCCCcccCCCCCChhhHHHHHHHHhccCccccccCceEEEeCCCcCCCCCCCHHHHHHhhcCCcCCCCchhhhHHHHH
Q 000510 60 PAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAA 139 (1456)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~A 139 (1456)
...+++||+.|++|||++||++|+.||..+.||||+|++|||||||+.+| +|+++.+..|+++..+++|||||+||++|
T Consensus 4 ~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~-~y~~~~~~~y~~~~~~~~~PHifavA~~A 82 (677)
T smart00242 4 KFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLP-IYTDEVIKKYRGKSRGELPPHVFAIADNA 82 (677)
T ss_pred ccCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCC-CCCHHHHHHccCCCCCCCCCCHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCcccHHHHHhhcchHHHhccCccccCCCCCCccccEE
Q 000510 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1456)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~ 219 (1456)
|+.|...++||||||||||||||||++|++|+||+.++++.. ...+|+++|+++||||||||||||++||||||||||+
T Consensus 83 y~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~-~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~ 161 (677)
T smart00242 83 YRNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNT-SVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFI 161 (677)
T ss_pred HHHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCccchheeE
Confidence 999999999999999999999999999999999999986532 3467999999999999999999999999999999999
Q ss_pred EEEecCCCccceeeeeeeccCCccccccCCCCCcceeehhccc-CCHHHHhhcCCCCCCCCccccCCCccccCCCCcHHH
Q 000510 220 EIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHE 298 (1456)
Q Consensus 220 ~l~f~~~g~i~ga~i~tyLLEksRvv~q~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~ 298 (1456)
+|+|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++
T Consensus 162 ~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~ 241 (677)
T smart00242 162 EIHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAEE 241 (677)
T ss_pred EEEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999 688999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCccccc-cccCccchHHHHHHHHhcCCCHHHHHHhhheeEE
Q 000510 299 YLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSS-VIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVM 377 (1456)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~ 377 (1456)
|.+|+.||+.|||+++++.+||+|||||||||||+|....+.++. .+. +...++.||.||||++++|.++|+++++
T Consensus 242 f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~ 318 (677)
T smart00242 242 FKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVK---DKEELENAAELLGVDPEELEKALTKRKI 318 (677)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccC---CHHHHHHHHHHhCCCHHHHHHHhcccEE
Confidence 999999999999999999999999999999999999875432221 222 3357999999999999999999999999
Q ss_pred EeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEeccccCCCCCCCChhHHHhhhhhhH
Q 000510 378 VTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEK 457 (1456)
Q Consensus 378 ~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNEk 457 (1456)
.+++|.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||||||||
T Consensus 319 ~~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEk 398 (677)
T smart00242 319 KTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIFEVNSFEQLCINYANEK 398 (677)
T ss_pred EeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecccccccccCCHHHHHhHhhHHH
Confidence 99999999999999999999999999999999999999999999877788999999999999999999999999999999
Q ss_pred HHhhHhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCccccccchhccCCCCchHHHHHHHHHHhcCCCCccC
Q 000510 458 LQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSK 537 (1456)
Q Consensus 458 Lq~~f~~~~f~~eq~ey~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~f~~ 537 (1456)
||++|++|+|+.||++|++|||+|++|+|.||++|||||+++|.|||++|||||++|+|||++|++||++.+++|+.|.+
T Consensus 399 Lq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~ 478 (677)
T smart00242 399 LQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSK 478 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCCcEEEeccceeeecccchhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCcCCCCCCcchhHHHHHHHHHH
Q 000510 538 PK-LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSL 616 (1456)
Q Consensus 538 p~-~~~~~F~I~Hyag~V~Y~~~~fleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~L 616 (1456)
|+ ..+..|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+.......+..+.+||+++|+.||+.|
T Consensus 479 ~~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~tv~~~fk~~L~~L 558 (677)
T smart00242 479 PRKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNAGSKKRFRTVGSQFKESLNKL 558 (677)
T ss_pred CCCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccccccCCCCcHHHHHHHHHHHH
Confidence 95 46779999999999999999999999999999999999999999999999875543334457789999999999999
Q ss_pred HHHHhccCCeEEeecCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhCCCCccChhhHHhhhhccccCccc-CCCchH
Q 000510 617 METLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLE-GNYDDQ 695 (1456)
Q Consensus 617 m~~l~~t~~h~IrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~-~~~~~~ 695 (1456)
|++|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.+|+.||++|++.... ...|++
T Consensus 559 ~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~k 638 (677)
T smart00242 559 MDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGGDAK 638 (677)
T ss_pred HHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcccccccCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986432 234689
Q ss_pred HHHHHHHHHhCC--CCeeeccceeecccchhhHHHHHHH
Q 000510 696 VACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARRA 732 (1456)
Q Consensus 696 ~~~~~ll~~~~~--~~~qiGkTkVFlr~~~~~~Le~~r~ 732 (1456)
+.|+.||+.+++ ++|++|+||||||++++..||+.|+
T Consensus 639 ~~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 639 EACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred HHHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 999999999875 5899999999999999999999874
No 18
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=6.3e-178 Score=1530.97 Aligned_cols=695 Identities=41% Similarity=0.707 Sum_probs=648.6
Q ss_pred CCCCCCcccCCCCCChhhHHHHHHHHhccCccccccCceEEEeCCCcCCCCCCCHHHHHHhhcCCcCCCCchhhhHHHHH
Q 000510 60 PAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAA 139 (1456)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~A 139 (1456)
...|||||+-|+-++|.+|..||+.||..+.||||+|+|||+||||+.+| +|++..|..|.|+..-+.||||||+|+++
T Consensus 16 k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~-~ft~~~~~~YqG~~q~E~pPHiyAladnm 94 (1106)
T KOG0162|consen 16 KHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMP-YFTEKEMELYQGAAQYENPPHIYALADNM 94 (1106)
T ss_pred eeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccc-cchHHHHHHhhchhhccCCchhhhhHHHH
Confidence 45799999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCcccHHHHHhhcchHHHhccCccccCCCCCCccccEE
Q 000510 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1456)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~ 219 (1456)
|++|..+.+||||||||||||||||++|+||+|++.+++ .+..-..|.+-||++||+|||||||||+||+||||||||+
T Consensus 95 Y~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~-~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~ 173 (1106)
T KOG0162|consen 95 YRNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSG-GGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYL 173 (1106)
T ss_pred HHHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhcc-CCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceE
Confidence 999999999999999999999999999999999999984 3444567889999999999999999999999999999999
Q ss_pred EEEecCCCccceeeeeeeccCCccccccCCCCCcceeehhccc-CCHHHHhhcCCCCCCCCccccCCCccccCCCCcHHH
Q 000510 220 EIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHE 298 (1456)
Q Consensus 220 ~l~f~~~g~i~ga~i~tyLLEksRvv~q~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~ 298 (1456)
||+|+..|.-+|++|.+|||||||||.|.++||||||||||++ |+.+.|..|++..|+.|.||+.++|+.++++||..+
T Consensus 174 Ei~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kd 253 (1106)
T KOG0162|consen 174 EIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKD 253 (1106)
T ss_pred EEEecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHH
Confidence 9999999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCccccccccCccchHHHHHHHHhcCCCHHHHHHhhheeEEE
Q 000510 299 YLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMV 378 (1456)
Q Consensus 299 f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 378 (1456)
|++|+.||+++||.++||+.||++||+|||||||.|.+. ...+.+.+. ..++-.|.|||||...|++.||.|.|.
T Consensus 254 fq~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee--~~~a~V~~~---~~~~f~ayLlgi~s~~l~~~Lt~R~M~ 328 (1106)
T KOG0162|consen 254 FQETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEE--GNYAAVSDK---SVLEFPAYLLGIDSARLEEKLTSRIME 328 (1106)
T ss_pred HHHHHHHheeccCChHHHHHHHHHHHHHHhccceeEEee--CCcceeccc---hHHHhHHHHhcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999983 233344443 368899999999999999999999987
Q ss_pred eC----CceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCC-CCeEEEEeccccCCCCCCCChhHHHhhh
Q 000510 379 TP----EEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPD-SKSIIGVLDIYGFESFKCNSFEQFCINF 453 (1456)
Q Consensus 379 ~~----~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~-~~~~IgiLDi~GFE~f~~NsfeQlcINy 453 (1456)
+. .+++.+||+++||...||||||+||.+||||||++||.+|...+. ...+||||||||||+|++||||||||||
T Consensus 329 s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINf 408 (1106)
T KOG0162|consen 329 SKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINF 408 (1106)
T ss_pred hcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHH
Confidence 53 489999999999999999999999999999999999999985433 5689999999999999999999999999
Q ss_pred hhhHHHhhHhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhc-CCCccccccchhccCC----CCchHHHHHHHHHH
Q 000510 454 TNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEK-KPGGIIALLDEACMFP----KSTHETFSQKLCQT 528 (1456)
Q Consensus 454 aNEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~dn~~~ldlie~-~~~Gil~lLdee~~~p----~~~d~~~~~kl~~~ 528 (1456)
.||||||.|.+-++|.|||||.+|||.|++|+|.||.-++||||. +|.||+++|||.|-.. .|.|++|+++|...
T Consensus 409 VNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~ 488 (1106)
T KOG0162|consen 409 VNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKL 488 (1106)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999996 5779999999999754 46799999999999
Q ss_pred hcCCCCccCCCCCCCCcEEEeccceeeecccchhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCCcCCCCCCcchhHH
Q 000510 529 FAKNNRFSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSR 608 (1456)
Q Consensus 529 ~~~~~~f~~p~~~~~~F~I~Hyag~V~Y~~~~fleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~ 608 (1456)
+++||+|.. ....|+|+||||+|+||++||.+||||.|..|+++|++.|+++|++.||+...+. .+..+.+|.|++
T Consensus 489 ~~s~phF~~---~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~-dskrRP~Tag~k 564 (1106)
T KOG0162|consen 489 FGSHPHFES---RSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDA-DSKRRPPTAGDK 564 (1106)
T ss_pred hcCCCcccc---ccCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhcc-cccCCCCCchhh
Confidence 999999975 3578999999999999999999999999999999999999999999999875433 334467899999
Q ss_pred HHHHHHHHHHHHhccCCeEEeecCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhCCCCccChhhHHhhhhccccCcc
Q 000510 609 FKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL 688 (1456)
Q Consensus 609 f~~~l~~Lm~~l~~t~~h~IrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~ 688 (1456)
.++|.++|++||..|.||||||||||+.|.|+.||...|++|+.|.|+-|.|||+|+||.+|..|+.|++||.+|.|...
T Consensus 565 IkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyailsp~t~ 644 (1106)
T KOG0162|consen 565 IKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAILSPQTW 644 (1106)
T ss_pred HHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheecCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999853
Q ss_pred -cCCCchHHHHHHHHHHhCC--CCeeeccceeecccch-hhHHHHHHHhhhhhhHHHHhhhhhchHHHHHHHHhhhhHHH
Q 000510 689 -EGNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQ-MAELDARRAEVLGNAARKIQRQTRTYIARKEFILLRNAAVI 764 (1456)
Q Consensus 689 -~~~~~~~~~~~~ll~~~~~--~~~qiGkTkVFlr~~~-~~~Le~~r~~~l~~aa~~IQ~~~R~~l~Rk~~~~~r~aai~ 764 (1456)
.+..|++.+|+.||+...+ ++||+|.||||.|..- +-.||.+|++.....|.+||++||.|++|++|.++|.-+..
T Consensus 645 ~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~ree~t~ 724 (1106)
T KOG0162|consen 645 PTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMREEATK 724 (1106)
T ss_pred cccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2346899999999998765 5899999999999854 67899999999999999999999999999999888876654
Q ss_pred H
Q 000510 765 L 765 (1456)
Q Consensus 765 I 765 (1456)
|
T Consensus 725 l 725 (1106)
T KOG0162|consen 725 L 725 (1106)
T ss_pred H
Confidence 4
No 19
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=1.9e-176 Score=1667.28 Aligned_cols=662 Identities=51% Similarity=0.845 Sum_probs=621.6
Q ss_pred CCCcccCCCCCChhhHHHHHHHHhccCccccccCceEEEeCCCcCCCCCCCHHHHHHhhcCCcCCCCchhhhHHHHHHHH
Q 000510 63 GVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRA 142 (1456)
Q Consensus 63 ~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~ 142 (1456)
++|||+.|++|||++|||+|+.||..+.||||+|++|||||||+.+| +|++++++.|+++..+++|||||+||+.||+.
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~-~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~ 79 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLP-NYGPETIRKYRGKSRSELPPHVFAIADRAYRN 79 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCC-CCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999998 79999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCcccHHHHHhhcchHHHhccCccccCCCCCCccccEEEEE
Q 000510 143 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 222 (1456)
Q Consensus 143 m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l~ 222 (1456)
|..+++||||||||||||||||++|++|+||+.+++.. ...++++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~ 156 (679)
T cd00124 80 MLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSN---DTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQ 156 (679)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCC---cchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEE
Confidence 99999999999999999999999999999999998643 356999999999999999999999999999999999999
Q ss_pred ecCCCccceeeeeeeccCCccccccCCCCCcceeehhccc-CCHHHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000510 223 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 301 (1456)
Q Consensus 223 f~~~g~i~ga~i~tyLLEksRvv~q~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 301 (1456)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++++|+||++++|..++++||+++|.+
T Consensus 157 f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 236 (679)
T cd00124 157 FDETGKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEE 236 (679)
T ss_pred ECCCCcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999998899999999999
Q ss_pred HHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCcccc--ccccCccchHHHHHHHHhcCCCHHHHHHhhheeEEEe
Q 000510 302 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDS--SVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT 379 (1456)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~--~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 379 (1456)
++.||+.|||+++++.+||+|||||||||||+|....+.+. +.+. +...++.||.||||+.++|.++||++++.+
T Consensus 237 ~~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 313 (679)
T cd00124 237 LKEALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVK---NTEVLSKAAELLGLDPEELEEALTYKVTKV 313 (679)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecC---CHHHHHHHHHHhCCCHHHHHHHhhccEEEe
Confidence 99999999999999999999999999999999987543322 2333 345799999999999999999999999999
Q ss_pred CCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEeccccCCCCCCCChhHHHhhhhhhHHH
Q 000510 380 PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQ 459 (1456)
Q Consensus 380 ~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNEkLq 459 (1456)
+++.+++++++++|..+||+|||+||++||+|||.+||.+|..+.....+||||||||||+|+.||||||||||||||||
T Consensus 314 ~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq 393 (679)
T cd00124 314 GGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQ 393 (679)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccCCCCCHHHHhcccchHHHH
Confidence 99999999999999999999999999999999999999999987677899999999999999999999999999999999
Q ss_pred hhHhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCccccccchhccCCCCchHHHHHHHHHHhcCCCCccC-C
Q 000510 460 QHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSK-P 538 (1456)
Q Consensus 460 ~~f~~~~f~~eq~ey~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~f~~-p 538 (1456)
|+|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|++||++.+++|++|.. +
T Consensus 394 ~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~ 473 (679)
T cd00124 394 QFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAK 473 (679)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998744 4
Q ss_pred CCCCCCcEEEeccceeeecccchhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCC-----------cCCCCCCcchhH
Q 000510 539 KLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEE-----------SSKSSKFSSIGS 607 (1456)
Q Consensus 539 ~~~~~~F~I~Hyag~V~Y~~~~fleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~-----------~~~~~~~~tv~~ 607 (1456)
+..+..|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+..... ..+..+.+||++
T Consensus 474 ~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~ 553 (679)
T cd00124 474 KNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTGSTSSKGKKKKGQTVGS 553 (679)
T ss_pred CCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccccccccccccccCCCcHHH
Confidence 456789999999999999999999999999999999999999999999999763211 112236689999
Q ss_pred HHHHHHHHHHHHHhccCCeEEeecCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhCCCCccChhhHHhhhhccccCc
Q 000510 608 RFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEV 687 (1456)
Q Consensus 608 ~f~~~l~~Lm~~l~~t~~h~IrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~ 687 (1456)
+|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+|+|||+|++|.+|+.||++|++..
T Consensus 554 ~f~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~ 633 (679)
T cd00124 554 QFRTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDL 633 (679)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ccCCCchHHHHHHHHHHhCC--CCeeeccceeecccchhhHHHHHH
Q 000510 688 LEGNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 731 (1456)
Q Consensus 688 ~~~~~~~~~~~~~ll~~~~~--~~~qiGkTkVFlr~~~~~~Le~~r 731 (1456)
.......++.|+.++..+++ ++|++|+||||||++++..||..|
T Consensus 634 ~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 634 LEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred ccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 54333344459999998876 489999999999999999999865
No 20
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=3e-176 Score=1658.57 Aligned_cols=660 Identities=31% Similarity=0.491 Sum_probs=592.2
Q ss_pred CCcccCCCCCChhhHHHHHHHHhccCccccccCceEEEeCCCcCCCCCCCHHHHHHhhcCCcCCCCchhhhHHHHHHHHH
Q 000510 64 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAM 143 (1456)
Q Consensus 64 ~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m 143 (1456)
||||+.|++|||++|||+|+.||..+.||||+|++|||||||+.+| +|++++++.|+++..+++||||||||+.||+.|
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~-iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m 80 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLA-LYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRAL 80 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCC-CCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred HhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCcccHHHHHhhcchHHHhccCccccCCCCCCccccEEEEEe
Q 000510 144 INEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQF 223 (1456)
Q Consensus 144 ~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l~f 223 (1456)
..+++||||||||||||||||+||+||+|||.+++..+. ....++|+++||||||||||||+|||||||||||++|+|
T Consensus 81 ~~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~--~~~~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F 158 (767)
T cd01386 81 LETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDG--RVSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDF 158 (767)
T ss_pred HHcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCc--ccHHHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEE
Confidence 999999999999999999999999999999999764321 222357999999999999999999999999999999999
Q ss_pred cCCCccceeeeeeeccCCccccccCCCCCcceeehhccc-CCHHHHhhcCCCCCCCCccccCCC-ccccCCCCcHHHHHH
Q 000510 224 DKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSN-CYELDGVSDAHEYLA 301 (1456)
Q Consensus 224 ~~~g~i~ga~i~tyLLEksRvv~q~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~-~~~~~~~~d~~~f~~ 301 (1456)
|.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++..+.+.+.++ +...++++|+++|..
T Consensus 159 ~~~g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~ 238 (767)
T cd01386 159 DQTGQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSR 238 (767)
T ss_pred CCCCcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHH
Confidence 999999999999999999999999999999999999999 788999999998765543333322 334678999999999
Q ss_pred HHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCccccccccCccchHHHHHHHHhcCCCHHHHHHhhheeEEEeCC
Q 000510 302 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPE 381 (1456)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 381 (1456)
|+.||+.|||+++++.+||+|||||||||||+|.... +.+.+.+ ...++.||.||||+.++|.++|+++++..+.
T Consensus 239 ~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~~--~~~~~~~---~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~ 313 (767)
T cd01386 239 LQQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATKVA--GRKQFAR---PEWAQKAAELLGCPLEELSSATFKHTLRGGI 313 (767)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecC--CccccCC---HHHHHHHHHHhCCCHHHHHHHhcccEEeecc
Confidence 9999999999999999999999999999999998622 2233333 2469999999999999999999998876554
Q ss_pred c-------------eEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEeccccCCCCCC-----
Q 000510 382 E-------------VITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKC----- 443 (1456)
Q Consensus 382 e-------------~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~----- 443 (1456)
+ .+..++++++|.++||||||+||++||+|||.+||.+|..+.....+||||||||||+|+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~n~~~~ 393 (767)
T cd01386 314 NQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKDR 393 (767)
T ss_pred eeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecccccccccccccC
Confidence 3 3345678999999999999999999999999999999998766678999999999999984
Q ss_pred -CChhHHHhhhhhhHHHhhHhhhhhhhhHHHhhhcCCccccccc-cChHHHHHHhhcCC--------------Ccccccc
Q 000510 444 -NSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEF-IDNQDVLDLIEKKP--------------GGIIALL 507 (1456)
Q Consensus 444 -NsfeQlcINyaNEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~-~dn~~~ldlie~~~--------------~Gil~lL 507 (1456)
|||||||||||||||||+||++||+.||+||.+|||+|+++.+ .||++|||||+++| .|||++|
T Consensus 394 ~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lL 473 (767)
T cd01386 394 AATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLL 473 (767)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhh
Confidence 8999999999999999999999999999999999999997655 79999999999865 5999999
Q ss_pred chhccCCCCchHHHHHHHHHHhcCCCCccCCC--C----CCCCcEEEeccce--eeecccchhhhcccch-HHHHHHHHH
Q 000510 508 DEACMFPKSTHETFSQKLCQTFAKNNRFSKPK--L----SRTDFTILHYAGE--VTYQANHFLDKNKDYV-VAEHQALLT 578 (1456)
Q Consensus 508 dee~~~p~~~d~~~~~kl~~~~~~~~~f~~p~--~----~~~~F~I~Hyag~--V~Y~~~~fleKN~D~~-~~~~~~ll~ 578 (1456)
||||++|++||++|++||++.|++|+.|.+++ . ....|+|+||||+ |+|+++||+|||||.+ +.+++++|+
T Consensus 474 DEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll~ 553 (767)
T cd01386 474 DEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLLQ 553 (767)
T ss_pred hHhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHHH
Confidence 99999999999999999999999998887622 1 2468999999995 9999999999999975 689999999
Q ss_pred hcchhhHhhcCCCCCC-------------CcC----------C--------CCCCcchhHHHHHHHHHHHHHHhccCCeE
Q 000510 579 AAKCSFVAGLFPPLPE-------------ESS----------K--------SSKFSSIGSRFKLQLQSLMETLNATAPHY 627 (1456)
Q Consensus 579 ~S~~~~v~~lf~~~~~-------------~~~----------~--------~~~~~tv~~~f~~~l~~Lm~~l~~t~~h~ 627 (1456)
+|++++|+.||+.... ..+ + ..|.+||+++||.||+.||++|++|+|||
T Consensus 554 ~S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~phf 633 (767)
T cd01386 554 DSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLHF 633 (767)
T ss_pred hCCcHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhccCCee
Confidence 9999999999953210 000 0 01345899999999999999999999999
Q ss_pred EeecCCCCCCC----------------------CCCCchhhHHHHhhccChhHHHHHHhhCCCCccChhhHHhhhhcccc
Q 000510 628 IRCVKPNNVLK----------------------PSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAP 685 (1456)
Q Consensus 628 IrCIkPN~~~~----------------------p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~ 685 (1456)
|||||||+.|+ |+.||.+.|++||||+||||+|||+|+|||+|++|.+|+.||++|++
T Consensus 634 IRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~~ 713 (767)
T cd01386 634 VHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAE 713 (767)
T ss_pred EEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhCh
Confidence 99999999874 78999999999999999999999999999999999999999999987
Q ss_pred Cccc------CCCchHHHHHHHHHHhCCC--CeeeccceeecccchhhHHHHHH
Q 000510 686 EVLE------GNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDARR 731 (1456)
Q Consensus 686 ~~~~------~~~~~~~~~~~ll~~~~~~--~~qiGkTkVFlr~~~~~~Le~~r 731 (1456)
.... ...|++++|+.||+.++++ +|++|+||||||+++++.||+.|
T Consensus 714 ~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 714 GLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred hhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 6431 2358899999999998864 79999999999999999999876
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=4.4e-168 Score=1612.03 Aligned_cols=653 Identities=49% Similarity=0.855 Sum_probs=579.3
Q ss_pred CCcccCCCCCChhhHHHHHHHHhccCccccccCceEEEeCCCcCCCCCCCHHHHHHhhcCCcCCCCchhhhHHHHHHHHH
Q 000510 64 VDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAM 143 (1456)
Q Consensus 64 ~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m 143 (1456)
||||+.|++|||++|||+|+.||..+.||||+|++|||||||+.+| +|+++++..|+++..+++||||||||++||++|
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m 79 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLP-LYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQM 79 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--S-TSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhh-hhhhhhhhhhhhhccccccCccchhhhcccccc
Confidence 7999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCC-CCcccHHHHHhhcchHHHhccCccccCCCCCCccccEEEEE
Q 000510 144 INEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG-VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 222 (1456)
Q Consensus 144 ~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~-~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~~l~ 222 (1456)
+++++||||||||||||||||++|++|+||+.++.... .....++++|+++||||||||||||++|+||||||||++|+
T Consensus 80 ~~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~ 159 (689)
T PF00063_consen 80 LRTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQ 159 (689)
T ss_dssp HHHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEE
T ss_pred cccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEE
Confidence 99999999999999999999999999999999986543 23467999999999999999999999999999999999999
Q ss_pred ecCCCccceeeeeeeccCCccccccCCCCCcceeehhccc-CCHHHHhhcCCCCCCCCccccCCCccccCCCCcHHHHHH
Q 000510 223 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 301 (1456)
Q Consensus 223 f~~~g~i~ga~i~tyLLEksRvv~q~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 301 (1456)
||.+|.++||+|.+||||||||+.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..+++.||+++|..
T Consensus 160 f~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~ 239 (689)
T PF00063_consen 160 FDDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQE 239 (689)
T ss_dssp EETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHH
T ss_pred ecccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhh
Confidence 9999999999999999999999999999999999999999 788899999999999999999999999999999999999
Q ss_pred HHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCCccccccccCccchHHHHHHHHhcCCCHHHHHHhhheeEEEeCC
Q 000510 302 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPE 381 (1456)
Q Consensus 302 ~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 381 (1456)
++.||+.|||+++++.+||+|||||||||||+|....+.+.+.+.+.. .++.||.||||++++|.++||+|++.+++
T Consensus 240 l~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~---~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 316 (689)
T PF00063_consen 240 LKDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENSE---ELQKAAELLGVDSEELEKALTTRTIKVGG 316 (689)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTSH---HHHHHHHHTTS-HHHHHHHHHSEEEESTT
T ss_pred hhhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechHH---HHHHhhhhcCCCHHHHHHHHhhccccccc
Confidence 999999999999999999999999999999999987654555555443 59999999999999999999999999999
Q ss_pred ceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCC-CCCeEEEEeccccCCCCCCCChhHHHhhhhhhHHHh
Q 000510 382 EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDP-DSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQ 460 (1456)
Q Consensus 382 e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~-~~~~~IgiLDi~GFE~f~~NsfeQlcINyaNEkLq~ 460 (1456)
|.+++++++++|..+||+|||+||++||+|||.+||.+|++.. ....+||||||||||+|..|||||||||||||+||+
T Consensus 317 e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~ 396 (689)
T PF00063_consen 317 ETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQ 396 (689)
T ss_dssp SEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccc
Confidence 9999999999999999999999999999999999999999866 678999999999999999999999999999999999
Q ss_pred hHhhhhhhhhHHHhhhcCCccccccc-cChHHHHHHhhcCCCccccccchhccCCCCchHHHHHHHHHHh-cCCCCccCC
Q 000510 461 HFNQHVFKMEQEEYTREEINWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTF-AKNNRFSKP 538 (1456)
Q Consensus 461 ~f~~~~f~~eq~ey~~Egi~~~~i~~-~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~-~~~~~f~~p 538 (1456)
+|++++|+.||++|.+|||+|..|+| .||++|||||+++|.|||++|||||++|++||++|++|+...+ ++|+.|.+|
T Consensus 397 ~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~~ 476 (689)
T PF00063_consen 397 FFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVKP 476 (689)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEECT
T ss_pred eeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCccccc
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999 889999988
Q ss_pred C----CCCCCcEEEeccceeeecccchhhhcccchHHHHHHHHHhcchhhHhhcCCCCCC--------------------
Q 000510 539 K----LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPE-------------------- 594 (1456)
Q Consensus 539 ~----~~~~~F~I~Hyag~V~Y~~~~fleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~-------------------- 594 (1456)
+ .....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||.....
T Consensus 477 ~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (689)
T PF00063_consen 477 RFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQS 556 (689)
T ss_dssp SSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTTS
T ss_pred ccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccccccccccccccccccccccc
Confidence 6 3678999999999999999999999999999999999999999999999976421
Q ss_pred -CcCCCCCCcchhHHHHHHHHHHHHHHhccCCeEEeecCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhCCCCccCh
Q 000510 595 -ESSKSSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTF 673 (1456)
Q Consensus 595 -~~~~~~~~~tv~~~f~~~l~~Lm~~l~~t~~h~IrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~ 673 (1456)
......+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||...|++||||+||+|+++|++.|||+|++|
T Consensus 557 ~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~ 636 (689)
T PF00063_consen 557 RSSGSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTF 636 (689)
T ss_dssp SCCCGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEH
T ss_pred cccccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecch
Confidence 0001124589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhccccCcccC----CCchHHHHHHHHHHhCC--CCeeeccceeecc
Q 000510 674 YEFVNRFGILAPEVLEG----NYDDQVACQMILDKKGL--KGYQIGKTKVFLR 720 (1456)
Q Consensus 674 ~~F~~ry~~l~~~~~~~----~~~~~~~~~~ll~~~~~--~~~qiGkTkVFlr 720 (1456)
.+|++||++|++..... ..+++++|+.||+.+++ +.|++|+||||||
T Consensus 637 ~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 637 DEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhhhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 99999999999875532 46899999999999987 5899999999997
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=7e-116 Score=1107.34 Aligned_cols=753 Identities=36% Similarity=0.561 Sum_probs=663.6
Q ss_pred CCCCCCcccCCCCCChhhHHHHHHHHhccCccccccCceEEEeCCCcCCCCCCCHHHHHHhhcCCcCCCCchhhhHHHHH
Q 000510 60 PAGGVDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAA 139 (1456)
Q Consensus 60 ~~~~~~Dl~~L~~l~e~~vL~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~A 139 (1456)
...+++||+.|..++|+.+++||..||..+.||||.|.+|++||||+.+|.+|.+..+..|.+.+.+++||||||+|+.|
T Consensus 59 ~~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~~ 138 (1062)
T KOG4229|consen 59 QVEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIADLA 138 (1062)
T ss_pred ccccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhhhhH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCcccHHHHHhhcchHHHhccCccccCCCCCCccccEE
Q 000510 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 219 (1456)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpiLEaFGNAkT~rN~NSSRfGk~~ 219 (1456)
|+.|.+...||||+||||||||||++|+++++||+.++. .....++++|+.+||+|||||||+|.+|||||||||||
T Consensus 139 y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq---~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i 215 (1062)
T KOG4229|consen 139 YQDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQ---GNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYI 215 (1062)
T ss_pred HHhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhc---CCCCchhhhhhcchHHHHHhcccCCcccCchhhhhheE
Confidence 999999999999999999999999999999999999984 12357899999999999999999999999999999999
Q ss_pred EEEecCCCccceeeeeeeccCCccccccCCCCCcceeehhccc-CCHHHHhhcCCCCCCCCccccCCCcccc-CCCCcHH
Q 000510 220 EIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYEL-DGVSDAH 297 (1456)
Q Consensus 220 ~l~f~~~g~i~ga~i~tyLLEksRvv~q~~~ErnfHiFYql~~-~~~~~~~~~~l~~~~~~~yl~~~~~~~~-~~~~d~~ 297 (1456)
++.|...|.|.||.+.-||||||||+.|+.+||||||||++++ .+.++++.+.|+.+.+|.||+++.+..+ ++.+|..
T Consensus 216 ~~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~~ 295 (1062)
T KOG4229|consen 216 KVNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDVA 295 (1062)
T ss_pred EeccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHHH
Confidence 9999999999999999999999999999999999999999999 6778889999999999999999999999 9999999
Q ss_pred HHHHHHhhhhhcccChHHHHHHHHHHHHHHhhcCceeccCC--ccccccccCccchHHHHHHHHhcCCCHHHHHHhhhee
Q 000510 298 EYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGK--EIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKR 375 (1456)
Q Consensus 298 ~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhLGni~f~~~~--~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~ 375 (1456)
+|..+..||..+||+.+++..||+++|||||+|||+|.... ..|.+.+.+ ..+++.+|.||.++.+.|.+++|.+
T Consensus 296 ~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~---~~~v~~vA~lL~~~~~~l~~alt~~ 372 (1062)
T KOG4229|consen 296 QFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVEN---EEAVERVACLLLIKEKLLQEALTAR 372 (1062)
T ss_pred hHHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhccc---chHHHHHHHHhhcCHHHhhhhhccc
Confidence 99999999999999999999999999999999999998632 234444443 3479999999999999999999999
Q ss_pred EEEeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCC--CCeEEEEeccccCCCCCCCChhHHHhhh
Q 000510 376 VMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPD--SKSIIGVLDIYGFESFKCNSFEQFCINF 453 (1456)
Q Consensus 376 ~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~--~~~~IgiLDi~GFE~f~~NsfeQlcINy 453 (1456)
+..++++.+..+++.++|.++|||+||.+|++||+|||.+||..+..+.. ....||||||||||+|+.|||||+||||
T Consensus 373 ~~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~ 452 (1062)
T KOG4229|consen 373 VNVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINL 452 (1062)
T ss_pred ceeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987655 3789999999999999999999999999
Q ss_pred hhhHHHhhHhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCccccccchhccCCCCchHHHHHHHHHHhcCCC
Q 000510 454 TNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN 533 (1456)
Q Consensus 454 aNEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~ 533 (1456)
|||+||++||+|||.+||+||..|+|+|..|+|.||++|+|+|..||.||+.+|||||.+|+++|.+++.|+..+++.+.
T Consensus 453 Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~~ 532 (1062)
T KOG4229|consen 453 ANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSNN 532 (1062)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CccCCCC-CCCCcEEEeccceeeecccchhhhcccchHHHHHHHHHhcchhhHhhcCCCCCCC-----------------
Q 000510 534 RFSKPKL-SRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEE----------------- 595 (1456)
Q Consensus 534 ~f~~p~~-~~~~F~I~Hyag~V~Y~~~~fleKN~D~~~~~~~~ll~~S~~~~v~~lf~~~~~~----------------- 595 (1456)
.+..|+. ..+.|+|.||||.|.|++.||+|||+|.++.+++.++++|.+.++..++...+..
T Consensus 533 ~y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~ 612 (1062)
T KOG4229|consen 533 LYVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPVP 612 (1062)
T ss_pred ccccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhhhccccccc
Confidence 8887776 4679999999999999999999999999999999999999888887665321000
Q ss_pred ------------------------------------------------cC------------------------------
Q 000510 596 ------------------------------------------------SS------------------------------ 597 (1456)
Q Consensus 596 ------------------------------------------------~~------------------------------ 597 (1456)
.+
T Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~ 692 (1062)
T KOG4229|consen 613 LEVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLS 692 (1062)
T ss_pred chhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhh
Confidence 00
Q ss_pred -C----------C--------------CC--------------------------------------------------C
Q 000510 598 -K----------S--------------SK--------------------------------------------------F 602 (1456)
Q Consensus 598 -~----------~--------------~~--------------------------------------------------~ 602 (1456)
+ . .+ .
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 772 (1062)
T KOG4229|consen 693 SRGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRR 772 (1062)
T ss_pred hcccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCcccc
Confidence 0 0 00 0
Q ss_pred cchh----------------HHHHHHHHHHHHHHhccCCeEEeecCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhC
Q 000510 603 SSIG----------------SRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAG 666 (1456)
Q Consensus 603 ~tv~----------------~~f~~~l~~Lm~~l~~t~~h~IrCIkPN~~~~p~~fd~~~v~~QLr~~gvle~iri~~~g 666 (1456)
..++ .++......++..+....|.|++|++-|..+....|+...|..|+++.|+++..+++..+
T Consensus 773 e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~ 852 (1062)
T KOG4229|consen 773 ERVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSL 852 (1062)
T ss_pred chhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheecc
Confidence 0011 123345556788888889999999999988888899999999999999999999999999
Q ss_pred CCCccChhhHHhhhhccccCcccCCCchHHHHHHHHHH--hCCCCeeeccceeecccchhhHHHHHHHhhhhh-hHHHHh
Q 000510 667 YPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDK--KGLKGYQIGKTKVFLRAGQMAELDARRAEVLGN-AARKIQ 743 (1456)
Q Consensus 667 yp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~ll~~--~~~~~~qiGkTkVFlr~~~~~~Le~~r~~~l~~-aa~~IQ 743 (1456)
|+..+++.+|...+++..|.... ......... ...++++.|++++|+.......++..-..-... .+...|
T Consensus 853 ~~~~i~~~~~~~~~~i~~~~~~~------~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ 926 (1062)
T KOG4229|consen 853 YFAEISPQDSVNQSRIGLPETVD------TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQ 926 (1062)
T ss_pred ccccccchhccccccccCCccch------hhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHH
Confidence 99999999999999998873211 111111111 134689999999999887765554433222222 377889
Q ss_pred hhhhchHHHHHHHHhhhhHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000510 744 RQTRTYIARKEFILLRNAAVILQSFLRGEMARKLYE-QLRREAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVA 822 (1456)
Q Consensus 744 ~~~R~~l~Rk~~~~~r~aai~IQa~~Rg~laRk~~~-~~r~~~AAi~IQ~~~R~~~aRk~~~~~r~a~i~iQs~~Rg~la 822 (1456)
++++....++.+..+..+.+.+| |++++.|+... ......++.-+|..|+.+..+..+...+++.+.+|+.+++...
T Consensus 927 ~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 1004 (1062)
T KOG4229|consen 927 KWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAY 1004 (1062)
T ss_pred HHHHhhhccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchh
Confidence 99999999999999999999999 88888877443 2234467888999999999999999999999999998887655
Q ss_pred HHHH
Q 000510 823 RNEF 826 (1456)
Q Consensus 823 Rr~~ 826 (1456)
++.+
T Consensus 1005 ~~~~ 1008 (1062)
T KOG4229|consen 1005 TMIF 1008 (1062)
T ss_pred hhhH
Confidence 5443
No 23
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=100.00 E-value=2.5e-32 Score=324.92 Aligned_cols=303 Identities=17% Similarity=0.322 Sum_probs=239.9
Q ss_pred hcHHHHHHhhh-ccCCCCCCccchHHHHHHHHhcccc--cccch----HHHHHHHHHHHHhhhhcc-CCcccchhhhHHH
Q 000510 1043 ENQDLLIKCIS-QDLGFSGGKPVAACLIYKCLLHWRS--FEVER----TSIFDRIIQTISGAIEVH-DNNDRLSYWLSNA 1114 (1456)
Q Consensus 1043 ~~~d~L~~~i~-~~~g~~~~kp~pA~il~~cl~~~~~--~~~e~----~~ll~~ii~~I~~~v~~~-~d~~~lafWLSN~ 1114 (1456)
-+++-.+..++ .+.+-...+..|.|- |..-.|.+. +..++ ..||.++++++..+++.+ ++...|+|||+|+
T Consensus 548 ~~~~sfL~~vi~~~a~t~~~~~s~~y~-y~~S~~yrp~~~pTer~hk~i~f~~~~~s~~~~viQeq~~~~~~LaFWmANa 626 (1629)
T KOG1892|consen 548 SSEDSFLSAVINTNASTVHFKLSPTYR-YVLSNQYRPDISPTERTHKVIAFVNKMVSMMEGVIQEQKNIAGALAFWMANA 626 (1629)
T ss_pred CcHHHHHHHHHhCcccccccccCcccc-hhhhcccccccCccccchhHHHHHHHHHHHHHHHHHHhhcccchhHHhhcCH
Confidence 34444444444 444444445555442 333344443 55555 589999999999999988 5556999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCcccccCCcccccccccccccCCCCCCCccccccccccccchhhHHHhhhhhHHHHHHHHH
Q 000510 1115 STLLLLLQRTLKASGAASLTPQRRRSTSSSLLGRMSQGLRASPQSAGIPFLNSRILSGLDDLRQVEAKYPALLFKQQLTA 1194 (1456)
Q Consensus 1115 ~~LL~~lq~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~p~~~fkq~L~~ 1194 (1456)
+++|||++++-..+ ...-+. +..|..
T Consensus 627 SEflhfik~Dr~ls------------------------------------------~~~~~a------------q~vla~ 652 (1629)
T KOG1892|consen 627 SEFLHFIKQDRDLS------------------------------------------RITLDA------------QDVLAH 652 (1629)
T ss_pred HHHHHHHHhccchh------------------------------------------heehhH------------HHHHHH
Confidence 99999999841100 000111 334999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCccccccCCCcchhHhhHhHHHhHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 000510 1195 FLEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLIKGRSQANAVAQQALIAHWQSIVKSLNNYLKIMRANYVPSFLIRK 1274 (1456)
Q Consensus 1195 l~~~iy~~l~~~l~~~L~p~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~l~~L~~~~V~~~l~~Q 1274 (1456)
+|+.+|..|+.+++.+|++.+...+.-... ..+...++|..|+..|.+|+.|+|+..|+.|
T Consensus 653 ~vq~aFr~LV~clqsel~~~~~afLden~~-------------------~~~a~gdVlh~L~~aM~llRrCrvNAALTIQ 713 (1629)
T KOG1892|consen 653 LVQMAFRYLVHCLQSELNNYMPAFLDENSL-------------------QRPAIGDVLHTLTGAMSLLRRCRVNAALTIQ 713 (1629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccc-------------------cCccccchHHHhHHHHHHHHHhccchHHHHH
Confidence 999999999999999999998766642211 1134568999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHhhhcc--CCCcccchhhHHHhcHHHHHHHHhhcCCccccchHHHhHHHHHHHHHHhhcCCCcCCH
Q 000510 1275 VFTQIFSFINVQLFNSLLLR--RECCSFSNGEFVKAGLAELEQWCHDSTEEFAGSAWDELRHIRQAVGFLVIHQKPKKTL 1352 (1456)
Q Consensus 1275 lf~QlF~fIna~lFN~Ll~r--~~~cs~s~G~qIr~nls~LE~W~~~~~~~~~~~~~~~L~~i~QA~~lLq~~kk~~~~~ 1352 (1456)
+|+|||||||+++||+|+.. ..+|+--||.-|++.|..||.||+..|+|.+++| ||..|+||++||+++|....++
T Consensus 714 LfsqLfH~iN~~~FN~lVt~~~s~~cs~~wGk~~~~rl~~ie~waErqGlElAAdC--HL~ri~Qaa~lL~~~K~a~ddi 791 (1629)
T KOG1892|consen 714 LFSQLFHFINMWLFNRLVTDPDSGLCSHYWGKIIRQRLGHIEAWAERQGLELAADC--HLSRIVQAATLLTMDKYAPDDI 791 (1629)
T ss_pred HHHHHHHHHHHHHhhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHHhcchHhhhc--cHHHHHHHHHHHhccccChhhH
Confidence 99999999999999999998 7899999999999999999999999999999999 9999999999999997666666
Q ss_pred HHHHhhhCCCCCHHHHHHHHhcCccCCCCCCCCCHHHHHHHHHhhhccc-----ccCCCCcccccCCCcCcccccc
Q 000510 1353 KEITNDLCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRVMMMDES-----NNAVSSSFLLDDDSSIPFTVDD 1423 (1456)
Q Consensus 1353 ~~i~~~~C~~Ls~~Ql~kIL~~Y~~d~~e~~~vs~~vi~~~~~~~~~~~-----~~~~~~~lllD~~~~~pf~~~~ 1423 (1456)
..+- ..|.+||+.|+.+||..|++++.|+ ++|.++++.+..+..... .++-.-.|-.+++..+||.+|+
T Consensus 792 ~~l~-stCfkLNSLQ~~alLq~~~~~~~e~-~~p~dlvd~v~r~AE~~ADeLtr~DGreV~LEEspeL~LpfLlP~ 865 (1629)
T KOG1892|consen 792 PNLN-STCFKLNSLQLQALLQNYHCAPDEP-FIPTDLVDNVVRVAENTADELTRSDGREVQLEESPELQLPFLLPE 865 (1629)
T ss_pred Hhhc-cchhhcchHHHHHHHhcCCCCCCCC-CCchHHHHHHHHHHHhhhhHhhhccCceeecccCcccccceeecC
Confidence 6665 7899999999999999999999996 999999999877654321 2223455666888899999998
No 24
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.94 E-value=1.9e-27 Score=233.79 Aligned_cols=105 Identities=36% Similarity=0.651 Sum_probs=88.4
Q ss_pred HHHHHHHHhhhHHHHHhhhccCCCcccchhhHHHhcHHHHHHHHhhcCCccccchHHHhHHHHHHHHHHhhcCCCcCCHH
Q 000510 1274 KVFTQIFSFINVQLFNSLLLRRECCSFSNGEFVKAGLAELEQWCHDSTEEFAGSAWDELRHIRQAVGFLVIHQKPKKTLK 1353 (1456)
Q Consensus 1274 Qlf~QlF~fIna~lFN~Ll~r~~~cs~s~G~qIr~nls~LE~W~~~~~~~~~~~~~~~L~~i~QA~~lLq~~kk~~~~~~ 1353 (1456)
|+|+|||+|||+.+||+||.|+++|+|++|+|||+||+.||+||+++|.+.. ++++|.|++||++|||++|++..|++
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~~~--~~~~l~~l~Qa~~lL~~~k~~~~d~~ 78 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLEEA--AEEHLQPLSQAANLLQLRKSTLQDWD 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTSTTH---HHHCHHHHHHHHHCCC--SSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 8999999999999999999999999999999999999999999999996554 67899999999999999755566555
Q ss_pred HHHhhhCCCCCHHHHHHHHhcCccCCCC
Q 000510 1354 EITNDLCPVLSIQQLYRISTMYWDDKYG 1381 (1456)
Q Consensus 1354 ~i~~~~C~~Ls~~Ql~kIL~~Y~~d~~e 1381 (1456)
.++ ++||+|||.||++||++|+||+||
T Consensus 79 ~~~-~~c~~Ln~~Qi~~iL~~Y~~~~~e 105 (105)
T PF01843_consen 79 SLR-ETCPSLNPAQIRKILSNYQPDDYE 105 (105)
T ss_dssp HHC-CCTTTS-HHHHHHHHCCB---TTS
T ss_pred HHH-HHcccCCHHHHHHHHHhCCCcCCC
Confidence 555 999999999999999999999986
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.21 E-value=2.5e-08 Score=135.70 Aligned_cols=411 Identities=15% Similarity=0.149 Sum_probs=203.9
Q ss_pred HHHHHHHhcCCCHHHHHHhhhe--eEEEeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEE
Q 000510 353 HLNMTAELLRCDAQSLEDALIK--RVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSII 430 (1456)
Q Consensus 353 ~l~~~a~LLgv~~~~L~~~l~~--~~~~~~~e~~~~~l~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~I 430 (1456)
.+..|-..||+++++....+-- =.+..|+-.+...-..++|.-.....|-.+- .|+..=+.-...++..+ ...+.
T Consensus 324 ~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~-~llg~~~~~~~~al~~p--riKvg 400 (1930)
T KOG0161|consen 324 ETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKAC-HLLGINVEEFLKALLRP--RIKVG 400 (1930)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCchHHHHHH-HHcCCCHHHHHHHhccc--ceecc
Confidence 4666778999999877654321 1112233222221134444433333333321 12222222222333221 12244
Q ss_pred EEeccccCCCCCCCChhHHHhhhhhhHHHhhHhhhhhhhhHHHhhhcCCccccccccChHHHHHHhhcCCCccccccchh
Q 000510 431 GVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEA 510 (1456)
Q Consensus 431 giLDi~GFE~f~~NsfeQlcINyaNEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~dn~~~ldlie~~~~Gil~lLdee 510 (1456)
+-.++.|+.. +| .+++=+-|...-...+| .....+...+++|. .+-+.+|.+++- |++.+.-+
T Consensus 401 ~e~v~k~q~~------~q--~~~~v~alAk~lYerlF-~wlV~riN~sld~~----~~~~~fIgvLDi-aGFEIfe~--- 463 (1930)
T KOG0161|consen 401 REWVSKAQNV------EQ--VLFAVEALAKALYERLF-GWLVKRINKSLDSK----QQRDYFIGVLDI-AGFEIFEF--- 463 (1930)
T ss_pred chhhhhcchH------HH--HHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhc----cccCCcceeeee-ccccccCc---
Confidence 5566666643 33 66676777665555566 46677888899887 344455555543 22222211
Q ss_pred ccCCCCchHHHH--------HHHHHHhcCCCCccCCC----CCCCCcEEEeccceeeecccchhhhcccchHHHHHHHH-
Q 000510 511 CMFPKSTHETFS--------QKLCQTFAKNNRFSKPK----LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALL- 577 (1456)
Q Consensus 511 ~~~p~~~d~~~~--------~kl~~~~~~~~~f~~p~----~~~~~F~I~Hyag~V~Y~~~~fleKN~D~~~~~~~~ll- 577 (1456)
.+|= +||.+- -+|.-|+.-- --+-.+..-|| |-=-=.+.+-|+|=. .+..+|
T Consensus 464 --------nSFEQLciNytnEkLQqf-Fnh~mFvlEqeeY~~EgIew~fidf-G~Dlq~~idLIEkp~-----Gi~slLd 528 (1930)
T KOG0161|consen 464 --------NSFEQLCINYTNEKLQQF-FNHHMFVLEQEEYQREGIEWDFIDF-GLDLQPTIDLIEKPM-----GILSLLD 528 (1930)
T ss_pred --------CCHHHHHHHHHHHHHHhh-hcchhhhhhHHHHHHhCCceeeecc-ccchhhhHHHHhchh-----hHHHHHH
Confidence 2232 334333 3444444211 11235666777 221122233344422 233332
Q ss_pred ------HhcchhhHhhcCCCCCCCcCCCCCCcchhHHHHHHHHHHHHHHhccCCeEEeecCCCCCCCCCCCchhhHHHHh
Q 000510 578 ------TAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQL 651 (1456)
Q Consensus 578 ------~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~~l~~Lm~~l~~t~~h~IrCIkPN~~~~p~~fd~~~v~~QL 651 (1456)
.+|...|+..|+.... ++.++|.... +.+....+....-+.+ |+|.-+|-..++..-.+..|+.+|
T Consensus 529 EEc~~PkAtd~tf~~kL~~~~~---gk~~~f~~~k---~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll 600 (1930)
T KOG0161|consen 529 EECVVPKATDKTFLEKLCDQHL---GKHPKFQKPK---GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLL 600 (1930)
T ss_pred HHHhcCCCccchHHHHHHHHhh---ccCccccCcc---cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHH
Confidence 3344455555543211 1223332222 3344555555555555 999999999998888899999999
Q ss_pred hccChhHHHHHHhhC---CCC------------ccChhhHHhhhh-------------------ccccCccc--CCCch-
Q 000510 652 RCGGVLEAIRISCAG---YPT------------RRTFYEFVNRFG-------------------ILAPEVLE--GNYDD- 694 (1456)
Q Consensus 652 r~~gvle~iri~~~g---yp~------------r~~~~~F~~ry~-------------------~l~~~~~~--~~~~~- 694 (1456)
+|++ .+.|...-.| +|. +-+|.-...+|+ |+.|.... +..|.
T Consensus 601 ~~s~-~~~v~~l~~~~~~~~~~~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~ 679 (1930)
T KOG0161|consen 601 KQST-NKLVSSLFQDYAGAAAAAKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAP 679 (1930)
T ss_pred Hhcc-cHHHHHHhhhhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHH
Confidence 9999 7777665433 331 111211122222 11121111 11111
Q ss_pred ----HHHHHHHHHHhCC--CCe--eeccceeecccchh-----------------hHHHHHHH----hhhhhhHHHHhhh
Q 000510 695 ----QVACQMILDKKGL--KGY--QIGKTKVFLRAGQM-----------------AELDARRA----EVLGNAARKIQRQ 745 (1456)
Q Consensus 695 ----~~~~~~ll~~~~~--~~~--qiGkTkVFlr~~~~-----------------~~Le~~r~----~~l~~aa~~IQ~~ 745 (1456)
.-.|..+|+.+.+ .+| +++.+--..|...+ ..+..+-. -.+...-+.+.+-
T Consensus 680 lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaG 759 (1930)
T KOG0161|consen 680 LVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAG 759 (1930)
T ss_pred HHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHH
Confidence 1234444443211 011 12211111111111 11111100 0112222333444
Q ss_pred hhchHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHH
Q 000510 746 TRTYIARKEFILLRNAAVILQSFLRGEMARKLYEQLR-REAAALKIQTNFRAYVAQRSYLTVR 807 (1456)
Q Consensus 746 ~R~~l~Rk~~~~~r~aai~IQa~~Rg~laRk~~~~~r-~~~AAi~IQ~~~R~~~aRk~~~~~r 807 (1456)
+-+.+.-.+-..+..-++.+|+.||||++|+.|.+.. +..|+.+||+.+|.|...+.|.+.+
T Consensus 760 vla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~ 822 (1930)
T KOG0161|consen 760 VLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWR 822 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHH
Confidence 5556666677777888999999999999999987765 4578889999999999999887654
No 26
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.68 E-value=1.6e-06 Score=110.53 Aligned_cols=86 Identities=35% Similarity=0.451 Sum_probs=80.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 000510 784 EAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQC 863 (1456)
Q Consensus 784 ~~AAi~IQ~~~R~~~aRk~~~~~r~a~i~iQs~~Rg~laRr~~~~~r~~~aai~IQ~~~R~~~~R~~y~~~~~a~i~iQ~ 863 (1456)
..+++.||+.+|+|..|+.|.++|++++.+|+.+||.++|+ ... +..||+.||+.||++..|+.|+..+.+++.+|+
T Consensus 673 ~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs 749 (862)
T KOG0160|consen 673 SAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQS 749 (862)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778899999999999999999999999999999999999 333 788999999999999999999999999999999
Q ss_pred hHHHHHHHH
Q 000510 864 GWRCRVARR 872 (1456)
Q Consensus 864 ~~R~~~aRr 872 (1456)
..|++.+|.
T Consensus 750 ~~r~~~~r~ 758 (862)
T KOG0160|consen 750 GVRAMLARN 758 (862)
T ss_pred HHHHHHhcc
Confidence 999999998
No 27
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.65 E-value=3.6e-08 Score=107.60 Aligned_cols=90 Identities=27% Similarity=0.314 Sum_probs=68.5
Q ss_pred hhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCcccHHHHHhhcchHHHhcc-CccccCCC
Q 000510 132 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFG-NAKTVRNN 210 (1456)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snpiLEaFG-NAkT~rN~ 210 (1456)
||+.+..++..|+ ++.|+||+..|+||||||.|+.--. ...+--...++ .+++..+..++++ +|.|.+|+
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G~~-------~~~Giip~~~~-~~~~ll~~g~~~R~~~~t~~N~ 78 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEGKR-------EGAGIIPRTVT-DVIDLMDKGNANRTTAATAMNE 78 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCCCC-------CCCCcchHHHH-HHHHHHhhccccccccccCCCC
Confidence 8888888899887 5799999999999999998843110 00000012233 3778888999999 99999999
Q ss_pred CCCccccEEEEEecCCCccc
Q 000510 211 NSSRFGKFVEIQFDKNGRIS 230 (1456)
Q Consensus 211 NSSRfGk~~~l~f~~~g~i~ 230 (1456)
+|||+..+++|++.......
T Consensus 79 ~SSRsH~i~~i~v~~~~~~~ 98 (186)
T cd01363 79 HSSRSHSVFRIHFGGKNALA 98 (186)
T ss_pred ccCcccEEEEEEEEEeecCC
Confidence 99999999999997654443
No 28
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=98.34 E-value=1.4e-06 Score=70.55 Aligned_cols=41 Identities=32% Similarity=0.611 Sum_probs=37.9
Q ss_pred CcEEEEeCCCCCeEeEEEEEEcCCeEEEEeCCCcEEEEecc
Q 000510 10 GSHVWVEDPVLAWINGEVMWINGQEVHVNCTNGKKVVTSVS 50 (1456)
Q Consensus 10 g~~vwv~~~~~~w~~~~v~~~~~~~~~~~~~~g~~~~~~~~ 50 (1456)
+.+|||||++++|+.|+|++.+|+.++|++.+|++++++.+
T Consensus 1 K~~vWvpD~~egfv~g~I~~~~g~~vtV~~~~G~~~tv~~d 41 (42)
T PF02736_consen 1 KKWVWVPDPKEGFVKGEIIEEEGDKVTVKTEDGKEVTVKKD 41 (42)
T ss_dssp TTEEEEEESSSSEEEEEEEEEESSEEEEEETTTEEEEEEGG
T ss_pred CCEEEEeCCcccEEEEEEEEEcCCEEEEEECCCCEEEeCCC
Confidence 36899999999999999999999999999999999988764
No 29
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.31 E-value=1.2e-06 Score=111.43 Aligned_cols=120 Identities=23% Similarity=0.304 Sum_probs=74.7
Q ss_pred hhhhhHHHHhhhhhchHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHH--------HHHHHHHHHhhhHHHHHHHHHH
Q 000510 734 VLGNAARKIQRQTRTYIARKEFILLRNAAVILQSFLRGEMARKLYEQLRR--------EAAALKIQTNFRAYVAQRSYLT 805 (1456)
Q Consensus 734 ~l~~aa~~IQ~~~R~~l~Rk~~~~~r~aai~IQa~~Rg~laRk~~~~~r~--------~~AAi~IQ~~~R~~~aRk~~~~ 805 (1456)
....+|..||..+|+|..|+.|..++.-++.||+.+||+..|+.|..+-. ..++.++|+.+|||..|+...+
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~ 887 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE 887 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc
Confidence 34578899999999999999999999999999999999999999876431 1234455555555555554444
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000510 806 VRSSAMILQTGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKK 853 (1456)
Q Consensus 806 ~r~a~i~iQs~~Rg~laRr~~~~~r~~~aai~IQ~~~R~~~~R~~y~~ 853 (1456)
.-.+++.+|..+|-+..-++.-..+.++|+++||+.+|.+.+|..|++
T Consensus 888 ~~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR 935 (975)
T KOG0520|consen 888 QETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRR 935 (975)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 444444444444444333333333334444444444444444433333
No 30
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.00 E-value=1.8e-05 Score=101.16 Aligned_cols=117 Identities=24% Similarity=0.324 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----------HHHHHHHHHhhHHHHHHHHHH
Q 000510 760 NAAVILQSFLRGEMARKLYEQLRREAAALKIQTNFRAYVAQRSYLTVRS----------SAMILQTGLRAMVARNEFRLR 829 (1456)
Q Consensus 760 ~aai~IQa~~Rg~laRk~~~~~r~~~AAi~IQ~~~R~~~aRk~~~~~r~----------a~i~iQs~~Rg~laRr~~~~~ 829 (1456)
.++..||..+|||..|+.|-.+| .-+++||+.+|||..|+.|+.+.. ++..+|..+||+..|+.....
T Consensus 811 ~aa~~iq~~f~~yk~r~~~l~tr--~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~ 888 (975)
T KOG0520|consen 811 AAASRIQKKFRGYKQRKEFLSTR--QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQ 888 (975)
T ss_pred hHHHHhhhhhhhHHhhhhhcccC--CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcc
Confidence 57889999999999999998888 458899999999999999986533 456678888888887765433
Q ss_pred HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000510 830 KRTKAAIIAQAQWRCHQAY--SYYKKLQRAIIVSQCGWRCRVARRELRKLKMA 880 (1456)
Q Consensus 830 r~~~aai~IQ~~~R~~~~R--~~y~~~~~a~i~iQ~~~R~~~aRrel~~Lk~e 880 (1456)
+.|++.||...|-|+.- ..|.++.++++.||+.+|...++.+++++...
T Consensus 889 --~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~~~ 939 (975)
T KOG0520|consen 889 --ETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLLLV 939 (975)
T ss_pred --ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34899999999999877 67899999999999999999999988887643
No 31
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=97.87 E-value=0.0014 Score=86.90 Aligned_cols=131 Identities=22% Similarity=0.119 Sum_probs=84.9
Q ss_pred hhchHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHHHHHHhhHHHH
Q 000510 746 TRTYIARKEFILLRNAAVILQSFLRGEMARKLYEQLRREAAALKIQTNFRAYVAQRS--YLTVRSSAMILQTGLRAMVAR 823 (1456)
Q Consensus 746 ~R~~l~Rk~~~~~r~aai~IQa~~Rg~laRk~~~~~r~~~AAi~IQ~~~R~~~aRk~--~~~~r~a~i~iQs~~Rg~laR 823 (1456)
+-+.+..+|-..+...++.||+.|||+..|++|.... +....||...+|+..|+. +-..-+..+.+|..+|....|
T Consensus 732 vL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~--k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r 809 (1463)
T COG5022 732 VLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQAL--KRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSR 809 (1463)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhH
Confidence 4456677777777888888888888888888876544 223334444444444433 233345677888888887777
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000510 824 NEFRLRKRTKAAIIAQ-AQWRCHQAYSY--YKKLQRAIIVSQCGWRCRVARRELRKLKMA 880 (1456)
Q Consensus 824 r~~~~~r~~~aai~IQ-~~~R~~~~R~~--y~~~~~a~i~iQ~~~R~~~aRrel~~Lk~e 880 (1456)
+.+.... .....+| ..+|....+.. -....++.+.+|+.||...+++.+..|+..
T Consensus 810 ~~~~~~~--~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~ 867 (1463)
T COG5022 810 KEYRSYL--ACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKE 867 (1463)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhH
Confidence 7664333 4556677 55665555552 445567788888888888888888777643
No 32
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=96.99 E-value=0.0003 Score=92.63 Aligned_cols=268 Identities=16% Similarity=0.100 Sum_probs=164.0
Q ss_pred hhHHHHHHHHHHHHHHhccCCeEEeecCCCCCCCCCCCchh-hHHHHhhccChhHHHHHHhhCCCCccChhhHHhhhhcc
Q 000510 605 IGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENF-NVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGIL 683 (1456)
Q Consensus 605 v~~~f~~~l~~Lm~~l~~t~~h~IrCIkPN~~~~p~~fd~~-~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l 683 (1456)
++..++-++......|.+..+||.|||+||+.-.+..++.. .+..++...|..++....+.|+..+..|.+++.+++..
T Consensus 644 ~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1062)
T KOG4229|consen 644 VLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNS 723 (1062)
T ss_pred ccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccc
Confidence 45556668888888888899999999999999999999987 89999999999999999999999999999998877743
Q ss_pred ccCcccCCCchHHHHHHHHHHhCCCCeeeccceeecccchhhHHHHHHHhhhh--------------------------h
Q 000510 684 APEVLEGNYDDQVACQMILDKKGLKGYQIGKTKVFLRAGQMAELDARRAEVLG--------------------------N 737 (1456)
Q Consensus 684 ~~~~~~~~~~~~~~~~~ll~~~~~~~~qiGkTkVFlr~~~~~~Le~~r~~~l~--------------------------~ 737 (1456)
.-.......-.+.+|..++++-+.+.+..+.+.++.+.-.-..+.-.+.+... .
T Consensus 724 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~ 803 (1062)
T KOG4229|consen 724 EYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRKSKLE 803 (1062)
T ss_pred cccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccchhhhHHHHHhhccccCccccccchhhccch
Confidence 21111111123456677777777777788888777765332222221111111 1
Q ss_pred hHHHHhhhhhchHHHHHHHHh----hhhHHHHHHHHHHhHHHHHHHH---------------------------------
Q 000510 738 AARKIQRQTRTYIARKEFILL----RNAAVILQSFLRGEMARKLYEQ--------------------------------- 780 (1456)
Q Consensus 738 aa~~IQ~~~R~~l~Rk~~~~~----r~aai~IQa~~Rg~laRk~~~~--------------------------------- 780 (1456)
.+..+|+-++....+..+... -..++.+|..|-|.+.+...+.
T Consensus 804 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~~v~~~~~~ 883 (1062)
T KOG4229|consen 804 SYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPETVDTVADEEFS 883 (1062)
T ss_pred hhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccCCccchhhchhhee
Confidence 233344444444433332222 1244555555554332221100
Q ss_pred -----------------------------HHHHHH---HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-
Q 000510 781 -----------------------------LRREAA---ALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFR- 827 (1456)
Q Consensus 781 -----------------------------~r~~~A---Ai~IQ~~~R~~~aRk~~~~~r~a~i~iQs~~Rg~laRr~~~- 827 (1456)
+..+.. +...|++++....++.+..+..+.+.+| +++.+.|+...
T Consensus 884 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~ 961 (1062)
T KOG4229|consen 884 TLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPV 961 (1062)
T ss_pred ecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCcc
Confidence 001101 2334555555556666666666666666 55555554332
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000510 828 LRKRTKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQCGWRCRVARREL 874 (1456)
Q Consensus 828 ~~r~~~aai~IQ~~~R~~~~R~~y~~~~~a~i~iQ~~~R~~~aRrel 874 (1456)
......++..+|..|+.+..+..+...+++.+.+|..++....+...
T Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1008 (1062)
T KOG4229|consen 962 AGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMIF 1008 (1062)
T ss_pred hhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhhH
Confidence 22334566677777777777777777777777777766665544433
No 33
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.94 E-value=0.0081 Score=73.87 Aligned_cols=59 Identities=29% Similarity=0.443 Sum_probs=32.3
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000510 758 LRNAAVILQSFLRGEMARKLYEQLRREAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEF 826 (1456)
Q Consensus 758 ~r~aai~IQa~~Rg~laRk~~~~~r~~~AAi~IQ~~~R~~~aRk~~~~~r~a~i~iQs~~Rg~laRr~~ 826 (1456)
+..-++.||+.|||+++|.+|++++ ++++.|+ +||.|. ++..+..||..+||+..++.+
T Consensus 695 l~~lvtllQK~~RG~~~R~ry~rmk--a~~~ii~-wyR~~K-------~ks~v~el~~~~rg~k~~r~y 753 (1001)
T KOG0164|consen 695 LPSLVTLLQKAWRGWLARQRYRRMK--ASATIIR-WYRRYK-------LKSYVQELQRRFRGAKQMRDY 753 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HHHHHH-------HHHHHHHHHHHHHhhhhcccc
Confidence 3445566666666666666666555 3444444 555332 333444556666666555544
No 34
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.81 E-value=0.083 Score=70.47 Aligned_cols=89 Identities=18% Similarity=0.172 Sum_probs=44.4
Q ss_pred HHHhhhHHHHHHHHHHHH-------HHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----
Q 000510 790 IQTNFRAYVAQRSYLTVR-------SSAMILQTGLRAMVA--RNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKLQ----- 855 (1456)
Q Consensus 790 IQ~~~R~~~aRk~~~~~r-------~a~i~iQs~~Rg~la--Rr~~~~~r~~~aai~IQ~~~R~~~~R~~y~~~~----- 855 (1456)
+|+..||+..|..+.... -.+..+|+.|||++. -+..........++.+|++.|++..|+.|.+..
T Consensus 541 ~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~ 620 (1401)
T KOG2128|consen 541 IQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKD 620 (1401)
T ss_pred hhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 355555555555443321 134455666665552 111122223345555666666665555544332
Q ss_pred --HHHHHHHhhHHHHHHHHHHHHHH
Q 000510 856 --RAIIVSQCGWRCRVARRELRKLK 878 (1456)
Q Consensus 856 --~a~i~iQ~~~R~~~aRrel~~Lk 878 (1456)
.+++.+|+..|...+|..++.|.
T Consensus 621 ~~~~~i~iqs~~r~f~~r~~y~~L~ 645 (1401)
T KOG2128|consen 621 NMTKIIKIQSKIRKFPNRKDYKLLF 645 (1401)
T ss_pred hhhhHHHHHHHHHhcccchHHHHHh
Confidence 35556666666666666665554
No 35
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.79 E-value=0.041 Score=73.18 Aligned_cols=167 Identities=19% Similarity=0.184 Sum_probs=100.8
Q ss_pred HhhhhhchHHHHHHHHh-----hhhHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHhhhHHHH----HHHHHHHH
Q 000510 742 IQRQTRTYIARKEFILL-----RNAAVILQSFLRGEMARKLYEQLR-----REAAALKIQTNFRAYVA----QRSYLTVR 807 (1456)
Q Consensus 742 IQ~~~R~~l~Rk~~~~~-----r~aai~IQa~~Rg~laRk~~~~~r-----~~~AAi~IQ~~~R~~~a----Rk~~~~~r 807 (1456)
.|.-+|+...|..--.+ ..-...+|+..||+..|..++... ..-....||..|||++. ...+....
T Consensus 513 ~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~ 592 (1401)
T KOG2128|consen 513 LQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAK 592 (1401)
T ss_pred HHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhh
Confidence 56666666666532111 222334488888888777655422 23456778888888873 22334456
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHH-----------HHHH
Q 000510 808 SSAMILQTGLRAMVARNEFRLRK-----RTKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQCGWRC-----------RVAR 871 (1456)
Q Consensus 808 ~a~i~iQs~~Rg~laRr~~~~~r-----~~~aai~IQ~~~R~~~~R~~y~~~~~a~i~iQ~~~R~-----------~~aR 871 (1456)
..++.+|+..||.++|+.+.... ...+.+.||++.|....|..|+.+..+--.--..+|. ....
T Consensus 593 ~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~~s~npsl~~vrkFV~lld~~~~df~~e 672 (1401)
T KOG2128|consen 593 KEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLFTSENPSLETVRKFVHLLDQTDVDFEEE 672 (1401)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHhcCCCCchhhHHhhhhhcCCccchHHHH
Confidence 67888888889888888765432 3467789999999999999998876311100000111 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 872 RELRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRL 911 (1456)
Q Consensus 872 rel~~Lk~ea~~~~~l~~~~~kLe~kv~eL~~rl~~ek~~ 911 (1456)
.++.++|. ++...-..+.+||+.+.++..++...-+.
T Consensus 673 ~~le~lr~---eIsrk~~sne~Lekdi~~md~kIgLLvKN 709 (1401)
T KOG2128|consen 673 LELEKLRE---EISRKIRSNEQLEKDINEMDEKIGLLVKN 709 (1401)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHhhhc
Confidence 33344443 34445566777888887777776655444
No 36
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.49 E-value=0.0032 Score=43.14 Aligned_cols=19 Identities=42% Similarity=0.781 Sum_probs=11.1
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 000510 785 AAALKIQTNFRAYVAQRSY 803 (1456)
Q Consensus 785 ~AAi~IQ~~~R~~~aRk~~ 803 (1456)
+||+.||++||||++|+.|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3555666666666666555
No 37
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.29 E-value=0.0045 Score=42.40 Aligned_cols=19 Identities=58% Similarity=0.913 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHhHHHHHH
Q 000510 760 NAAVILQSFLRGEMARKLY 778 (1456)
Q Consensus 760 ~aai~IQa~~Rg~laRk~~ 778 (1456)
+|++.||++|||+++|+.|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3556666666666666654
No 38
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.19 E-value=0.0042 Score=73.73 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=44.1
Q ss_pred eCCCcCCCCCCCHHHHHHhhcCCcCCCCchhhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhH
Q 000510 102 VNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETT 166 (1456)
Q Consensus 102 vNP~~~l~~ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 166 (1456)
+|||...| |+......++. +.++|-|-| -+.-|..-..||+||++||.|||||+-.
T Consensus 24 ~Npf~~~p--~s~rY~~ilk~--R~~LPvw~~-----k~~F~~~l~~nQ~~v~vGetgsGKttQi 79 (699)
T KOG0925|consen 24 INPFNGKP--YSQRYYDILKK--RRELPVWEQ-----KEEFLKLLLNNQIIVLVGETGSGKTTQI 79 (699)
T ss_pred cCCCCCCc--CcHHHHHHHHH--HhcCchHHh-----HHHHHHHHhcCceEEEEecCCCCccccC
Confidence 99999998 88776665543 456776544 4667888889999999999999999754
No 39
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=1.9 Score=54.43 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=12.2
Q ss_pred cCCCcccchhhHHHhcHHHHHHHH
Q 000510 1294 RRECCSFSNGEFVKAGLAELEQWC 1317 (1456)
Q Consensus 1294 r~~~cs~s~G~qIr~nls~LE~W~ 1317 (1456)
.++-.-|=-|.-+.-+=-+.--|+
T Consensus 1008 kKn~sGWWeGELqarGkkrq~GWF 1031 (1118)
T KOG1029|consen 1008 KKNASGWWEGELQARGKKRQIGWF 1031 (1118)
T ss_pred ecCCCccchhhHhhcCCccccccc
Confidence 345555666655554444444443
No 40
>PTZ00014 myosin-A; Provisional
Probab=95.40 E-value=0.026 Score=74.47 Aligned_cols=40 Identities=15% Similarity=0.051 Sum_probs=27.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000510 786 AALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNE 825 (1456)
Q Consensus 786 AAi~IQ~~~R~~~aRk~~~~~r~a~i~iQs~~Rg~laRr~ 825 (1456)
.+..||++||||++|++|++.+.+++.||+.+|++++++.
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777777777777777777777777777766653
No 41
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=94.64 E-value=16 Score=46.38 Aligned_cols=39 Identities=15% Similarity=0.344 Sum_probs=23.6
Q ss_pred CCCccccCCCCcHHHHHHHHhhhhhcccChHHHHHHHHHHHHHHhh
Q 000510 284 QSNCYELDGVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHL 329 (1456)
Q Consensus 284 ~~~~~~~~~~~d~~~f~~~~~al~~lg~~~~~~~~i~~ilaaiLhL 329 (1456)
.|||.-..|.. +.+..|-..||+..+|.. ..+.|-|+.-
T Consensus 360 rGGC~v~n~se-----qsL~~~a~LLGld~~elr--~~L~aRvMqt 398 (1259)
T KOG0163|consen 360 RGGCQVSNGSE-----QSLTIAAELLGLDQTELR--TGLCARVMQT 398 (1259)
T ss_pred CCceecccCch-----hhHHHHHHHhCCCHHHHH--HHHHHHHHHh
Confidence 46665433332 456677889999988754 3455556653
No 42
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.63 E-value=0.033 Score=40.33 Aligned_cols=21 Identities=38% Similarity=0.672 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHH
Q 000510 784 EAAALKIQTNFRAYVAQRSYL 804 (1456)
Q Consensus 784 ~~AAi~IQ~~~R~~~aRk~~~ 804 (1456)
..+|+.||+.||||++|+.|+
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 356777888888888777763
No 43
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.56 E-value=1.5 Score=57.28 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 938 ELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 977 (1456)
Q Consensus 938 el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q 977 (1456)
.+..+.+++|.++..|+.+++..|+.+..+++|.+.|+..
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888889999999999899888888888877764
No 44
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=94.08 E-value=0.27 Score=58.22 Aligned_cols=131 Identities=12% Similarity=0.109 Sum_probs=73.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHhhhcc-CCCcccchhhHHHhcHHHHHHHHhhcCC
Q 000510 1244 LIAHWQSIVKSLNNYLKIMRANYVPSFLIRKVFTQIFSFINVQLFNSLLLR-RECCSFSNGEFVKAGLAELEQWCHDSTE 1322 (1456)
Q Consensus 1244 ~~~~~~~il~~L~~~l~~L~~~~V~~~l~~Qlf~QlF~fIna~lFN~Ll~r-~~~cs~s~G~qIr~nls~LE~W~~~~~~ 1322 (1456)
+...+.+++.+|..++... ...+|+.+..-++...|.+|+..+.+-|+.. .+..+-.--.++...|..+|.++.+...
T Consensus 177 ps~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~~ 255 (311)
T PF04091_consen 177 PSDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSLPV 255 (311)
T ss_dssp --HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-SS
T ss_pred CCHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhCcC
Confidence 4567889999999998654 5679999999999999999999999998754 3445555567899999999999998711
Q ss_pred --ccccchHHHhHHHHHHHHHHhhcCCCcCCHH-HHHhhhCCCCCHHHHHHHHhcCc
Q 000510 1323 --EFAGSAWDELRHIRQAVGFLVIHQKPKKTLK-EITNDLCPVLSIQQLYRISTMYW 1376 (1456)
Q Consensus 1323 --~~~~~~~~~L~~i~QA~~lLq~~kk~~~~~~-~i~~~~C~~Ls~~Ql~kIL~~Y~ 1376 (1456)
.-.+...+.|..++|.++||....-..- .+ .++..-.+.++|..+..||..|+
T Consensus 256 ~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y-~d~~~r~~kY~~v~p~~~~~lLeK~k 311 (311)
T PF04091_consen 256 PGNNIPSLRETFAELRQLVDLLLSDDWEEY-LDPGIRERKYSRVKPEKAIKLLEKLK 311 (311)
T ss_dssp SS--SSTTGGGGHHHHHHHHHHH----------------------------------
T ss_pred cccccccHHHHHHHHHHHHHHHhcCCHHHH-hCccccccccCCCCHHHHHHHHHhcC
Confidence 1244567899999999999997632222 22 35544478888888888888764
No 45
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=93.94 E-value=0.048 Score=39.45 Aligned_cols=20 Identities=50% Similarity=0.715 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHhHHHHHH
Q 000510 759 RNAAVILQSFLRGEMARKLY 778 (1456)
Q Consensus 759 r~aai~IQa~~Rg~laRk~~ 778 (1456)
..+++.||++|||+++|+.|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45677778888888777776
No 46
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.68 E-value=0.039 Score=55.42 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=21.3
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000510 151 SILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yl 173 (1456)
.|+|+|.||||||+.+|.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999976
No 47
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.66 E-value=5.4 Score=41.77 Aligned_cols=97 Identities=20% Similarity=0.293 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 883 ETGALQEAKNKLEKRVEELTWRLQIEKR-------LRGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQD 955 (1456)
Q Consensus 883 ~~~~l~~~~~kLe~kv~eL~~rl~~ek~-------~~~~le~l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~ 955 (1456)
++..|...+..++.+++.+..++...+. .....+.+..++..++.+++..+..+.....++.+...+...+..
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eR 115 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFER 115 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3445555666666666666665554332 223344566777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 956 SVQRLAEKVSNLESENQVLRQQAL 979 (1456)
Q Consensus 956 el~~lee~l~~le~e~~~L~~q~~ 979 (1456)
.++.++......+.....+..+..
T Consensus 116 kv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 116 KVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 777777777777666666665544
No 48
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.55 E-value=4.4 Score=43.81 Aligned_cols=74 Identities=26% Similarity=0.299 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 892 NKLEKRVEELTWRLQIEKRLRGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESEN 971 (1456)
Q Consensus 892 ~kLe~kv~eL~~rl~~ek~~~~~le~l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~ 971 (1456)
..|++++..+++.++..+.+..+++.++... ..++.+...+..+.+.+|.+...|..++..+.+...++..+.
T Consensus 46 ~~L~~q~~s~Qqal~~aK~l~eEledLk~~~-------~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~ 118 (193)
T PF14662_consen 46 TDLRKQLKSLQQALQKAKALEEELEDLKTLA-------KSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAER 118 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 3334444444444444444444444433333 333333333333333333343444444444333333333333
Q ss_pred H
Q 000510 972 Q 972 (1456)
Q Consensus 972 ~ 972 (1456)
.
T Consensus 119 ~ 119 (193)
T PF14662_consen 119 D 119 (193)
T ss_pred h
Confidence 3
No 49
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.46 E-value=37 Score=45.74 Aligned_cols=62 Identities=21% Similarity=0.415 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 918 QTQTADEAKQAFTVSEAKN-GELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQAL 979 (1456)
Q Consensus 918 l~~~~~ele~~l~~~e~~~-~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q~~ 979 (1456)
.+...+.+++.+.+++++. ..+..++.+.+.+++.|+.+++.+++.+..|.++.+.+++++.
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555554 4555555666666666666666666666666655555555443
No 50
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.44 E-value=9.8 Score=45.54 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 926 KQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESEN 971 (1456)
Q Consensus 926 e~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~ 971 (1456)
+.++.+.+.+++...+++.+++.++..++.+++.++++..++.++.
T Consensus 215 r~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 215 RQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333
No 51
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.10 E-value=35 Score=43.98 Aligned_cols=11 Identities=18% Similarity=0.214 Sum_probs=5.2
Q ss_pred HHHHHHHHHHh
Q 000510 519 ETFSQKLCQTF 529 (1456)
Q Consensus 519 ~~~~~kl~~~~ 529 (1456)
.+++.-++-.+
T Consensus 41 Stll~aI~~~l 51 (562)
T PHA02562 41 STMLEALTFAL 51 (562)
T ss_pred HHHHHHHHHHH
Confidence 34555554443
No 52
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.08 E-value=4.7 Score=45.51 Aligned_cols=41 Identities=24% Similarity=0.443 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 922 ADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAE 962 (1456)
Q Consensus 922 ~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee 962 (1456)
...++.+...++.++.++..++.+++.++..++.++..++.
T Consensus 98 ~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 98 IQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444444443333
No 53
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.60 E-value=40 Score=43.34 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=6.0
Q ss_pred HHHHHhcCccC
Q 000510 1368 LYRISTMYWDD 1378 (1456)
Q Consensus 1368 l~kIL~~Y~~d 1378 (1456)
+.+++.||-+.
T Consensus 1053 v~qviamYdY~ 1063 (1118)
T KOG1029|consen 1053 VCQVIAMYDYE 1063 (1118)
T ss_pred cceeEEeeccc
Confidence 44555666643
No 54
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.52 E-value=0.074 Score=54.08 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=21.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
+...+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 35678999999999999999999987764
No 55
>PRK09039 hypothetical protein; Validated
Probab=92.47 E-value=6.9 Score=47.12 Aligned_cols=89 Identities=15% Similarity=0.184 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 892 NKLEKRVEELTWRLQIEKRLRGLLQS-----------QTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRL 960 (1456)
Q Consensus 892 ~kLe~kv~eL~~rl~~ek~~~~~le~-----------l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~l 960 (1456)
..++.++.+++.++...+..+.+++. ++.+...+..++...+....+...++..+..+|..|+.++..+
T Consensus 77 ~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~l 156 (343)
T PRK09039 77 QDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAAL 156 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34555666665555544444444442 2233333444444444444444444444555555555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 000510 961 AEKVSNLESENQVLRQQALA 980 (1456)
Q Consensus 961 ee~l~~le~e~~~L~~q~~~ 980 (1456)
+..+...+.+.+..+.++..
T Consensus 157 e~~L~~ae~~~~~~~~~i~~ 176 (343)
T PRK09039 157 EAALDASEKRDRESQAKIAD 176 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 56
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.45 E-value=62 Score=46.41 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000510 959 RLAEKVSNLESENQVLRQQAL 979 (1456)
Q Consensus 959 ~lee~l~~le~e~~~L~~q~~ 979 (1456)
..++++.+++.+...++++..
T Consensus 446 nF~aklee~e~qL~elE~kL~ 466 (1486)
T PRK04863 446 EFQAKEQEATEELLSLEQKLS 466 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555543
No 57
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.33 E-value=10 Score=42.90 Aligned_cols=48 Identities=15% Similarity=0.372 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 923 DEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESE 970 (1456)
Q Consensus 923 ~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e 970 (1456)
.+|..++..++.+...++.++.++..++..+++++..+.+++..++..
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~ 139 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKN 139 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444333
No 58
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.31 E-value=6.5 Score=47.05 Aligned_cols=55 Identities=24% Similarity=0.409 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 914 LLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLE 968 (1456)
Q Consensus 914 ~le~l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le 968 (1456)
+++.++.++.+...++...++++.+++.++.+++.+++.+.++..++...+.+++
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555555555555555555555555554444
No 59
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=92.23 E-value=4.1 Score=47.01 Aligned_cols=89 Identities=18% Similarity=0.181 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 892 NKLEKRVEELTWRLQIEKRLRGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESEN 971 (1456)
Q Consensus 892 ~kLe~kv~eL~~rl~~ek~~~~~le~l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~ 971 (1456)
.+|++-.+.++.+-.+-++++..-+++..+.-....-+.+.+.+...++.-+..++++...++-+++++.....+.++|.
T Consensus 85 eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeees 164 (401)
T PF06785_consen 85 EGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEES 164 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHH
Confidence 34444333333333333334444444444444444455555555566666666666666666666666666666666666
Q ss_pred HHHHHHHHh
Q 000510 972 QVLRQQALA 980 (1456)
Q Consensus 972 ~~L~~q~~~ 980 (1456)
+.|-+++.+
T Consensus 165 q~LnrELaE 173 (401)
T PF06785_consen 165 QTLNRELAE 173 (401)
T ss_pred HHHHHHHHH
Confidence 666555443
No 60
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.19 E-value=9.2 Score=49.50 Aligned_cols=129 Identities=23% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000510 838 AQAQWRCHQAYSYYKKLQRAIIVSQCGWRCRVARRELRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRGLLQS 917 (1456)
Q Consensus 838 IQ~~~R~~~~R~~y~~~~~a~i~iQ~~~R~~~aRrel~~Lk~ea~~~~~l~~~~~kLe~kv~eL~~rl~~ek~~~~~le~ 917 (1456)
++...|.......-.+.+++- -+..++.|..-.-....+++.+.++-.+..+|+.+|..++....++.+
T Consensus 229 Lr~QvrdLtEkLetlR~kR~E-----------Dk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe 297 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAE-----------DKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQE 297 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhh-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000510 918 QTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQALA 980 (1456)
Q Consensus 918 l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q~~~ 980 (1456)
.+.+... ++.+....++-+.-.++-.|++.+.|+.++..+.+++.+|+.+++.|+.++..
T Consensus 298 ~ke~~k~---emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 298 AKERYKE---EMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 61
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.09 E-value=18 Score=47.75 Aligned_cols=31 Identities=23% Similarity=0.606 Sum_probs=23.2
Q ss_pred cCCCCchhhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcC
Q 000510 125 FGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1456)
Q Consensus 125 ~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~ 178 (1456)
..+..||--| |+|=.|||||- |+.-++++-|
T Consensus 20 I~~fDp~FNA-------------------ITGlNGSGKSN----ILDsICFvLG 50 (1174)
T KOG0933|consen 20 ISGFDPQFNA-------------------ITGLNGSGKSN----ILDSICFVLG 50 (1174)
T ss_pred ccCCCcccch-------------------hhcCCCCCchH----HHHHHHHHHc
Confidence 4677888766 69999999996 5666666543
No 62
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.05 E-value=0.082 Score=57.10 Aligned_cols=33 Identities=36% Similarity=0.573 Sum_probs=22.5
Q ss_pred HhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 144 INEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 144 ~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
...+...+|+|.|++|+|||...+.+++++..-
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 456678999999999999999999999888764
No 63
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=91.82 E-value=0.1 Score=52.69 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yl 173 (1456)
|+|+|-+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999996
No 64
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=91.62 E-value=0.2 Score=51.02 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.5
Q ss_pred cCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 146 EGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 146 ~~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
......|+|.|++|+|||..++.+.+.+.
T Consensus 16 ~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 16 LPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34567999999999999999999998875
No 65
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=91.56 E-value=0.13 Score=46.52 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=20.9
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yl 173 (1456)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999998
No 66
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.47 E-value=0.12 Score=55.89 Aligned_cols=25 Identities=40% Similarity=0.407 Sum_probs=21.8
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHH
Q 000510 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
+.|+|.|.||||||+.++.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999998877753
No 67
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=91.45 E-value=0.2 Score=61.44 Aligned_cols=42 Identities=29% Similarity=0.433 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 132 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
++...-.|...+..-++.|.+.|.|.||+|||+..+.|+.+.
T Consensus 138 ~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 138 PLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred ccccceeeccceEeEecceEEEEECCCCCCccHHHHHHhccc
Confidence 344455566667667889999999999999999988876643
No 68
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.34 E-value=0.11 Score=60.41 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
++.+.+=|-||||||||++++.||+.|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4567888999999999999999999985
No 69
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.26 E-value=0.27 Score=50.67 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=23.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.....|+++|++|||||+.+|.+++.|
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999988876
No 70
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.20 E-value=0.19 Score=58.01 Aligned_cols=28 Identities=39% Similarity=0.625 Sum_probs=23.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
.....++|+|++|+|||+.++.+.+.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 4456899999999999999999887764
No 71
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.09 E-value=8.4 Score=39.00 Aligned_cols=51 Identities=24% Similarity=0.309 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 914 LLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKV 964 (1456)
Q Consensus 914 ~le~l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l 964 (1456)
+++...++...++.++.+++.+.+.+..-+.+..+++.+|+.++.++++-.
T Consensus 62 ~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 62 ELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 334444555666666666666666666666777777777777766665543
No 72
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=90.90 E-value=3 Score=52.97 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=86.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHhhhccCCCcccchhhHHHhcHHHHHHHHhhcCCc
Q 000510 1244 LIAHWQSIVKSLNNYLKIMRANYVPSFLIRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEFVKAGLAELEQWCHDSTEE 1323 (1456)
Q Consensus 1244 ~~~~~~~il~~L~~~l~~L~~~~V~~~l~~Qlf~QlF~fIna~lFN~Ll~r~~~cs~s~G~qIr~nls~LE~W~~~~~~~ 1323 (1456)
++++....+..|...+..|+.. +++.....+..++..-|+-.+++.++++. -.|..-|.|+.+=+..|-.....
T Consensus 353 ~S~el~~~L~~L~~~L~~L~~~-L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~~~L~~~~~~---- 426 (494)
T PF04437_consen 353 PSPELVPALSLLRSRLSFLERS-LPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDMRALFSVFSQ---- 426 (494)
T ss_dssp --GGGHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHHHHHHTTS------
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHHHHHHHHHHh----
Confidence 3456667899999999999999 99999999999999999999999999986 46666777777766544443332
Q ss_pred cccchHHHhHHHHHHHHHHhhcCCCcCCH--------------HHHHhhh-CCCCCHHHHHHHHh
Q 000510 1324 FAGSAWDELRHIRQAVGFLVIHQKPKKTL--------------KEITNDL-CPVLSIQQLYRIST 1373 (1456)
Q Consensus 1324 ~~~~~~~~L~~i~QA~~lLq~~kk~~~~~--------------~~i~~~~-C~~Ls~~Ql~kIL~ 1373 (1456)
+....-.++..|.+++.||-++..+.... .+++.+. =..||+.++.+||.
T Consensus 427 ~~~~p~~~f~~l~E~~~LL~L~~~~~~~~~~~l~~~~~~~~~~~~~l~~lgI~~Ls~~ea~~vL~ 491 (494)
T PF04437_consen 427 YTPRPEAFFKRLREACKLLNLPYGSAKLLKEFLSKSYIKNENARKLLEELGISHLSPSEARDVLY 491 (494)
T ss_dssp TTSGG-HHHHHHHHHHHHHGGGG-CGG--TTTTSHHHHHHT--SHHHHHTT-SSS-HHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHcCCCCcchhhhHHHHhhhhccchHHHHHHHHCCCCcCCHHHHHHHHH
Confidence 33334469999999999999987554422 2233233 25788888888875
No 73
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.81 E-value=16 Score=37.67 Aligned_cols=37 Identities=19% Similarity=0.457 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000510 945 DAEKRVDELQDSVQRLAEKVSNLESENQVLRQQALAI 981 (1456)
Q Consensus 945 ele~~i~~L~~el~~lee~l~~le~e~~~L~~q~~~l 981 (1456)
..+.+-..|+.++..++.++.+|...|..|.+|+..+
T Consensus 95 sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 95 SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555566677888888888888888999888887654
No 74
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=90.71 E-value=0.35 Score=54.77 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=29.5
Q ss_pred hcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcC
Q 000510 145 NEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1456)
Q Consensus 145 ~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~ 178 (1456)
..++..-|.|+|.||||||+.++.+...|...++
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 3477889999999999999999999999987554
No 75
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=90.63 E-value=0.15 Score=51.66 Aligned_cols=23 Identities=43% Similarity=0.781 Sum_probs=21.6
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla 174 (1456)
|+|.|++|+|||+.++.+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 78999999999999999999974
No 76
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.60 E-value=12 Score=40.65 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 922 ADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQA 978 (1456)
Q Consensus 922 ~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q~ 978 (1456)
...+..+...++++...+..++..+..+...+..+.+.+.++..+|-.++..|+.++
T Consensus 83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 333334444444444455555555555555555555555555555555555554443
No 77
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.57 E-value=0.24 Score=58.69 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=27.7
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
.+.++..+. .|||+|..|||||+..+.++.++..
T Consensus 137 L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 137 IRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 445555554 5999999999999999999998854
No 78
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=90.41 E-value=0.19 Score=49.64 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=20.7
Q ss_pred CCeEEEecCCCCCCchhhHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLM 170 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~ 170 (1456)
..+.+.|.|+||||||+.++.++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45789999999999999999976
No 79
>PRK05480 uridine/cytidine kinase; Provisional
Probab=90.31 E-value=0.21 Score=55.58 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=24.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
++.--|.|+|.||||||+.++.|.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999887
No 80
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=90.30 E-value=0.2 Score=52.63 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=21.5
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~y 172 (1456)
....|+|.|+||||||+.+..+++.
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3688999999999999999877764
No 81
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.28 E-value=5.3 Score=43.52 Aligned_cols=13 Identities=15% Similarity=-0.148 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHh
Q 000510 835 AIIAQAQWRCHQA 847 (1456)
Q Consensus 835 ai~IQ~~~R~~~~ 847 (1456)
|.++|...|++..
T Consensus 75 A~kf~eeLrg~VG 87 (290)
T COG4026 75 AEKFFEELRGMVG 87 (290)
T ss_pred HHHHHHHHHHhhh
Confidence 3445555555543
No 82
>PRK06696 uridine kinase; Validated
Probab=90.23 E-value=0.32 Score=54.88 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 135 VGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 135 iA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
+|+..+.. ..+..--|.|+|.||||||+.|+.|.+.|..
T Consensus 10 la~~~~~~--~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 10 LAEHILTL--NLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHh--CCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44444431 3556778999999999999999999999854
No 83
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.19 E-value=0.18 Score=55.76 Aligned_cols=25 Identities=32% Similarity=0.663 Sum_probs=22.4
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHH
Q 000510 151 SILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
.|+|+|++|||||++.+.+++++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999888753
No 84
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.19 E-value=0.18 Score=55.82 Aligned_cols=26 Identities=38% Similarity=0.500 Sum_probs=23.6
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
..+.|+|.|.||||||+.++.+.+.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56889999999999999999998875
No 85
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=90.14 E-value=0.44 Score=58.44 Aligned_cols=41 Identities=32% Similarity=0.374 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHH
Q 000510 132 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~y 172 (1456)
++.+.-.|...+..-++.|-+.|.|.||+|||+..+.+++.
T Consensus 145 ~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~ 185 (444)
T PRK08972 145 PLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRG 185 (444)
T ss_pred cccccceeecceEEEcCCCEEEEECCCCCChhHHHHHhccC
Confidence 33444455556666678999999999999999998888753
No 86
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=89.96 E-value=0.19 Score=55.38 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.2
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yl 173 (1456)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999988877
No 87
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=89.91 E-value=9.7 Score=43.07 Aligned_cols=66 Identities=14% Similarity=0.186 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 914 LLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQAL 979 (1456)
Q Consensus 914 ~le~l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q~~ 979 (1456)
-|++.+++.+.|..+.....+++.+....+..+|..+.+.+.+.....+.+..+..|...|+.++.
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in 98 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEIN 98 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444455555555555544444444444444444444443
No 88
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.86 E-value=0.32 Score=56.38 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=26.6
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
+..+.... .-.|+|+|++|||||++.+.++.++..
T Consensus 72 l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 72 FRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred HHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 34444322 346999999999999999999998753
No 89
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=89.86 E-value=0.19 Score=54.05 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=22.3
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000510 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
..-|||||.||+|||+.+|.++.-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568999999999999999999876
No 90
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=89.84 E-value=0.29 Score=51.77 Aligned_cols=29 Identities=38% Similarity=0.448 Sum_probs=25.6
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000510 149 SNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla~~~ 177 (1456)
.-.|.++|.||||||+.++.+-+.|-..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 34799999999999999999999998765
No 91
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.82 E-value=2.5 Score=46.89 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 946 AEKRVDELQDSVQRLAEKVSNLESENQVLR 975 (1456)
Q Consensus 946 le~~i~~L~~el~~lee~l~~le~e~~~L~ 975 (1456)
++.+.++|++++..+..++..++.++..++
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444333
No 92
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=89.77 E-value=8.9 Score=41.88 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=28.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 911 LRGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKV 964 (1456)
Q Consensus 911 ~~~~le~l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l 964 (1456)
+..+++.++.++++.++++..++.++..+..+.+.+..++..|++.+.+|+..+
T Consensus 154 L~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 154 LLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 344444555555555555555555555555555555555555555555555443
No 93
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=89.77 E-value=0.19 Score=55.28 Aligned_cols=26 Identities=42% Similarity=0.551 Sum_probs=23.2
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhc
Q 000510 152 ILVSGESGAGKTETTKMLMRYLAYLG 177 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~~~ 177 (1456)
|-|+|.||||||+.|+.+-..|...+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccC
Confidence 77999999999999999999997543
No 94
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=89.68 E-value=11 Score=47.37 Aligned_cols=75 Identities=24% Similarity=0.385 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 887 LQEAKNKLEKRVEELTWRLQIEKRLRGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKV 964 (1456)
Q Consensus 887 l~~~~~kLe~kv~eL~~rl~~ek~~~~~le~l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l 964 (1456)
|++....++.++.+++..|...+.. .+.++.+..++......+..+.+.+..+..++..++..|++++..+..+.
T Consensus 162 Le~e~~~l~~~v~~l~~eL~~~~ee---~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 162 LEEEVEQLREEVERLEAELEQEEEE---MEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555554443332 22223333333333333344444444444444444444444444443333
No 95
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.56 E-value=21 Score=39.62 Aligned_cols=99 Identities=22% Similarity=0.254 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 883 ETGALQEAKNKLEKRVEELTWRLQIEKRLRGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAE 962 (1456)
Q Consensus 883 ~~~~l~~~~~kLe~kv~eL~~rl~~ek~~~~~le~l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee 962 (1456)
+...+.+...+++.++.+|+..+..-......+...+.+...+++++..++.+.+.+..+...++.+...|.......-.
T Consensus 56 eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ 135 (201)
T PF13851_consen 56 ENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQ 135 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677777777787777766666666666666666666666666666666666666666666666554443322
Q ss_pred HH-HHHHHHHHHHHHHHHhc
Q 000510 963 KV-SNLESENQVLRQQALAI 981 (1456)
Q Consensus 963 ~l-~~le~e~~~L~~q~~~l 981 (1456)
.+ .+..-.+-.|++++..+
T Consensus 136 evqQk~~~kn~lLEkKl~~l 155 (201)
T PF13851_consen 136 EVQQKTGLKNLLLEKKLQAL 155 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 22 22223444445554443
No 96
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.55 E-value=3.2 Score=45.84 Aligned_cols=68 Identities=21% Similarity=0.180 Sum_probs=50.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000510 913 GLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQALA 980 (1456)
Q Consensus 913 ~~le~l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q~~~ 980 (1456)
..+..++.+...++.++..++.++.+..+.+..+..++..|+-+...+++++.+++.||..|-+.-..
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666667777777777777777777777788888888888888888888888888776544
No 97
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=89.22 E-value=0.28 Score=54.59 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=23.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
.+..-|.|+|.||||||+.++.+...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567888999999999999998887764
No 98
>PRK11637 AmiB activator; Provisional
Probab=89.19 E-value=35 Score=42.50 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 950 VDELQDSVQRLAEKVSNLESENQVLR 975 (1456)
Q Consensus 950 i~~L~~el~~lee~l~~le~e~~~L~ 975 (1456)
+..|+.+....+..+.+++.+.+.+.
T Consensus 221 l~~L~~~~~~~~~~l~~l~~~~~~L~ 246 (428)
T PRK11637 221 LTGLESSLQKDQQQLSELRANESRLR 246 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333433333333
No 99
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=89.18 E-value=28 Score=38.69 Aligned_cols=59 Identities=27% Similarity=0.328 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 921 TADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQAL 979 (1456)
Q Consensus 921 ~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q~~ 979 (1456)
+.+.+.+++..++++.++...+++.++.+...++.+.+++..+...+-+|++.|+.++.
T Consensus 152 ~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 33444444455555555555555555555556666666666666666666666666554
No 100
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=89.11 E-value=0.23 Score=50.02 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=24.5
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 149 SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
.+.|+|.|.+|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999998887654
No 101
>PRK11637 AmiB activator; Provisional
Probab=89.01 E-value=4.5 Score=50.38 Aligned_cols=28 Identities=21% Similarity=0.597 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 941 KKLKDAEKRVDELQDSVQRLAEKVSNLE 968 (1456)
Q Consensus 941 ~~~~ele~~i~~L~~el~~lee~l~~le 968 (1456)
.++.+.+.++..++.++..+++++..++
T Consensus 89 ~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 89 RKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 102
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=88.98 E-value=0.47 Score=56.75 Aligned_cols=56 Identities=25% Similarity=0.367 Sum_probs=35.8
Q ss_pred HHHhhcCCcCCCCchhhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 117 MEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 117 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
.+.|+-....++-.|-..+ +........+....++++|++|+|||+.++.+.+++.
T Consensus 6 ~~ky~P~~~~~~~g~~~~~--~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 6 TEKYRPALLEDILGQDEVV--ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHhhCCCcHHHhcCCHHHH--HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4556555444443332222 1233334445545799999999999999999999875
No 103
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=88.91 E-value=14 Score=36.20 Aligned_cols=85 Identities=26% Similarity=0.467 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 887 LQEAKNKLEKRVEELTWRLQIEKRLRGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSN 966 (1456)
Q Consensus 887 l~~~~~kLe~kv~eL~~rl~~ek~~~~~le~l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~ 966 (1456)
+......+++++..|+..++.++.-+.++ .++.++|+..+..++.+.....+.+.+++.++..+...++. +++.+
T Consensus 7 l~as~~el~n~La~Le~slE~~K~S~~eL---~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~--eK~ak 81 (107)
T PF09304_consen 7 LEASQNELQNRLASLERSLEDEKTSQGEL---AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED--EKQAK 81 (107)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 44455566666766666666655544444 34455566677777777777777777777777777777665 34444
Q ss_pred HHHHHHHHHH
Q 000510 967 LESENQVLRQ 976 (1456)
Q Consensus 967 le~e~~~L~~ 976 (1456)
++-+...++.
T Consensus 82 ~~l~~r~~k~ 91 (107)
T PF09304_consen 82 LELESRLLKA 91 (107)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4333333333
No 104
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=88.90 E-value=0.55 Score=52.72 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 138 AAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
.+.+.+........|+|.|++|+|||..++.+.+++..
T Consensus 27 ~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 27 AALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444667889999999999999999999988753
No 105
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=88.82 E-value=26 Score=36.52 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 932 SEAKNGELTKKLKDAEKRVDELQDSVQRLA 961 (1456)
Q Consensus 932 ~e~~~~el~~~~~ele~~i~~L~~el~~le 961 (1456)
+..++..+..+...+...+...+.++.+|+
T Consensus 71 L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 71 LELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 106
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=88.81 E-value=1.9 Score=53.08 Aligned_cols=41 Identities=24% Similarity=0.415 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 133 FAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 133 faiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
|...-.|...+..-.+.|.+.|.|.||+|||+..+.+++..
T Consensus 141 l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 141 FSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred ccchhHHhhhcceecCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 33444577777777899999999999999999999888764
No 107
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=88.71 E-value=0.25 Score=52.74 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.9
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000510 151 SILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yl 173 (1456)
-|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998865
No 108
>PRK08233 hypothetical protein; Provisional
Probab=88.69 E-value=0.23 Score=53.59 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.3
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHH
Q 000510 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
.-|.|+|.||||||+.++.+...|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999998874
No 109
>PTZ00301 uridine kinase; Provisional
Probab=88.62 E-value=0.29 Score=54.69 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.1
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla 174 (1456)
|-|+|-||||||+.|+.|.+-|.
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHH
Confidence 67899999999999988887764
No 110
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=88.61 E-value=22 Score=40.55 Aligned_cols=54 Identities=20% Similarity=0.328 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 924 EAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 977 (1456)
Q Consensus 924 ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q 977 (1456)
..+.++..+..++.+.......++..+..|+.+++.+++.+.........+...
T Consensus 173 ~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~e 226 (237)
T PF00261_consen 173 EYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEE 226 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444455555555555555444444444444333
No 111
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=88.58 E-value=0.41 Score=56.47 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=24.3
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
...|+|+|..|||||+.++.+++++..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 357999999999999999999999864
No 112
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=88.49 E-value=0.29 Score=55.13 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.0
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~ 175 (1456)
|-|+|.||||||+.++.|...|..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999988753
No 113
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.47 E-value=23 Score=46.82 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=15.3
Q ss_pred hccCCeEEeecCCCCCCCCCC
Q 000510 621 NATAPHYIRCVKPNNVLKPSI 641 (1456)
Q Consensus 621 ~~t~~h~IrCIkPN~~~~p~~ 641 (1456)
..|..+||.|=+|.....|.-
T Consensus 421 ~~~~Ve~llcT~~~~~~~~~P 441 (717)
T PF10168_consen 421 SPCIVEYLLCTKPLSSSAPNP 441 (717)
T ss_pred CCcceEEEeccCCCCCCCCCC
Confidence 345679999999987766544
No 114
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=88.46 E-value=0.3 Score=50.61 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=20.5
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yl 173 (1456)
|+|+|.+|||||+.++.+...+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998876
No 115
>PRK06315 type III secretion system ATPase; Provisional
Probab=88.44 E-value=0.67 Score=57.19 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 138 AAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.|...+..-++.|.+.|.|+||+|||+..+.++.+.
T Consensus 153 ~aID~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 188 (442)
T PRK06315 153 RCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNA 188 (442)
T ss_pred EEEeccccccCCcEEEEECCCCCCcchHHHHhhccc
Confidence 344445566789999999999999999999998866
No 116
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=88.42 E-value=0.25 Score=55.52 Aligned_cols=19 Identities=42% Similarity=0.714 Sum_probs=16.2
Q ss_pred EEEecCCCCCCchhhHHHH
Q 000510 151 SILVSGESGAGKTETTKML 169 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~ 169 (1456)
-|||||-||||||++.+.+
T Consensus 3 lvIVTGlSGAGKsvAl~~l 21 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL 21 (286)
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 4899999999999986654
No 117
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=88.35 E-value=0.31 Score=53.04 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=22.0
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~ 175 (1456)
|.|+|.||||||+.++.+...|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998864
No 118
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=88.27 E-value=26 Score=38.51 Aligned_cols=59 Identities=27% Similarity=0.334 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 920 QTADEAKQAFTVSEAKNGELTKKLKDAEKRVDE-LQDSVQRLAEKVSNLESENQVLRQQA 978 (1456)
Q Consensus 920 ~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~-L~~el~~lee~l~~le~e~~~L~~q~ 978 (1456)
.++..++.+..+++.+..++..+....+.+..+ .+.+.+...+++..+...++.|++++
T Consensus 127 ~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 127 EEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433 23333444555555556666665554
No 119
>PRK07261 topology modulation protein; Provisional
Probab=88.27 E-value=0.32 Score=52.50 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000510 151 SILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yl 173 (1456)
-|+|.|.||||||+.++.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999886654
No 120
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=88.16 E-value=0.47 Score=56.37 Aligned_cols=55 Identities=22% Similarity=0.384 Sum_probs=35.6
Q ss_pred HHHhhcCCcCCCCchhhhHHHHHHHHHHhcC-CCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 117 MEQYKGAAFGELSPHVFAVGDAAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 117 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~-~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.++|+-....++-.|--. ..........+ -+..++++|++|+|||+.++.+.+.+
T Consensus 12 ~~kyrP~~~~~~~~~~~~--~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 12 EQKYRPSTIDECILPAAD--KETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred eeccCCCcHHHhcCcHHH--HHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 356766666665333211 22344433333 46777789999999999999998875
No 121
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=88.11 E-value=20 Score=40.64 Aligned_cols=68 Identities=22% Similarity=0.254 Sum_probs=44.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 910 RLRGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 977 (1456)
Q Consensus 910 ~~~~~le~l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q 977 (1456)
+...+.+.|..+.....++|......+..++..++..+.+....++.+..+.+.+..|..+...++.+
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555556666666666666777777777777777777777777777777777777666
No 122
>PRK06762 hypothetical protein; Provisional
Probab=87.94 E-value=0.34 Score=51.77 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=22.3
Q ss_pred eEEEecCCCCCCchhhHHHHHHHH
Q 000510 150 NSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
..|+|+|.+|||||+.++.+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999887
No 123
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=87.92 E-value=0.31 Score=53.30 Aligned_cols=26 Identities=35% Similarity=0.691 Sum_probs=23.0
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
...|+|+|++|||||++.+.++.++-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46899999999999999999888763
No 124
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.85 E-value=34 Score=35.68 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 920 QTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQV 973 (1456)
Q Consensus 920 ~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~ 973 (1456)
+.+..++.++..+-..+..+...+..+..+...+...++...++++.|+..+-.
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~ 105 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSS 105 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334444444444444444444444444444444444444444455554444333
No 125
>PRK05541 adenylylsulfate kinase; Provisional
Probab=87.84 E-value=0.32 Score=52.55 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=25.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
.+...|++.|.||||||+.++.+.+.|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35568999999999999999999999864
No 126
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=87.79 E-value=0.31 Score=56.14 Aligned_cols=20 Identities=35% Similarity=0.680 Sum_probs=16.8
Q ss_pred eEEEecCCCCCCchhhHHHH
Q 000510 150 NSILVSGESGAGKTETTKML 169 (1456)
Q Consensus 150 QsIiisGESGaGKTe~~k~~ 169 (1456)
+-|||||-||||||++.+.+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL 21 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH
Confidence 46999999999999976544
No 127
>PRK06547 hypothetical protein; Provisional
Probab=87.77 E-value=0.66 Score=50.17 Aligned_cols=29 Identities=31% Similarity=0.428 Sum_probs=24.9
Q ss_pred hcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 145 NEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 145 ~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
..+...-|+|+|.||||||+.++.+.+-+
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35677889999999999999999988764
No 128
>PF05729 NACHT: NACHT domain
Probab=87.73 E-value=0.41 Score=50.47 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=23.6
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhc
Q 000510 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla~~~ 177 (1456)
-++|+|+.|+|||+.++.++..++.-.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 489999999999999999998887643
No 129
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.64 E-value=7.8 Score=43.08 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 946 AEKRVDELQDSVQRLAEKVSNLESENQVLRQQA 978 (1456)
Q Consensus 946 le~~i~~L~~el~~lee~l~~le~e~~~L~~q~ 978 (1456)
.+..+.+|+++.+++.+++..+++++..++.+.
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444333
No 130
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=87.64 E-value=0.35 Score=47.86 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.4
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHh
Q 000510 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
|.|.|++|.|||..++.+++++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6799999999999999999988754
No 131
>PRK08118 topology modulation protein; Reviewed
Probab=87.62 E-value=0.38 Score=51.68 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.1
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHH
Q 000510 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
+-|+|.|.+|||||+.+|.+-+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999988763
No 132
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=87.60 E-value=0.41 Score=51.70 Aligned_cols=24 Identities=46% Similarity=0.652 Sum_probs=22.7
Q ss_pred EEEecCCCCCCchhhHHHHHHHHH
Q 000510 151 SILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla 174 (1456)
++++.|.||.|||+++|.+-++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999986
No 133
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.54 E-value=70 Score=38.10 Aligned_cols=7 Identities=14% Similarity=0.520 Sum_probs=2.7
Q ss_pred cChhhHH
Q 000510 671 RTFYEFV 677 (1456)
Q Consensus 671 ~~~~~F~ 677 (1456)
++..+|+
T Consensus 10 isL~dFL 16 (312)
T smart00787 10 ISLQDFL 16 (312)
T ss_pred ccHHHHH
Confidence 3333443
No 134
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=87.37 E-value=0.43 Score=51.60 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.7
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000510 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
..-|+++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999887764
No 135
>PRK00131 aroK shikimate kinase; Reviewed
Probab=87.23 E-value=0.45 Score=50.83 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=23.7
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
....|++.|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998887
No 136
>PF12846 AAA_10: AAA-like domain
Probab=87.14 E-value=0.43 Score=55.71 Aligned_cols=30 Identities=33% Similarity=0.462 Sum_probs=26.2
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHHhcC
Q 000510 149 SNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla~~~~ 178 (1456)
|..++|.|.||||||++++.++..++..+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~ 30 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGP 30 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCC
Confidence 457899999999999999999998887653
No 137
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=87.02 E-value=1.9 Score=53.43 Aligned_cols=41 Identities=27% Similarity=0.405 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 133 FAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 133 faiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
+.+.-.+...+..-++.|.+.|.|.||+|||+..+.++.+.
T Consensus 142 l~tg~~vid~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 142 MEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNT 182 (438)
T ss_pred cccchhhhheeeeecCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 44556677777777899999999999999999888777654
No 138
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=87.00 E-value=0.45 Score=57.08 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=23.0
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
...|+|+|.+|||||+..+.++.++-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 45699999999999999999988863
No 139
>PRK14737 gmk guanylate kinase; Provisional
Probab=86.98 E-value=0.37 Score=52.80 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=21.8
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000510 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.--|||+|.||||||+.++.+++.+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4569999999999999999998764
No 140
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.97 E-value=0.73 Score=55.99 Aligned_cols=55 Identities=20% Similarity=0.379 Sum_probs=39.9
Q ss_pred HHHhhcCCcCCCC--chhhhHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 117 MEQYKGAAFGELS--PHVFAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 117 ~~~y~~~~~~~~~--PHifaiA~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
.++|+-....+.- +|+-.. .+.+... +-+++++++|+.|+|||+.++.+.+.|-+
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred HHHhCCCchhhccChHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 4567766666654 454433 4444444 56899999999999999999999998853
No 141
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=86.90 E-value=0.38 Score=57.92 Aligned_cols=27 Identities=33% Similarity=0.637 Sum_probs=24.0
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
....|+|+|++|||||++.+.+++++.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 357899999999999999999998874
No 142
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=86.89 E-value=0.33 Score=57.66 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=24.9
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000510 149 SNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla~~~ 177 (1456)
--++-+-||||||||.|+..||+-|.+-+
T Consensus 36 GEtlAlVGESGSGKSvTa~sim~LLp~~~ 64 (534)
T COG4172 36 GETLALVGESGSGKSVTALSILGLLPSPA 64 (534)
T ss_pred CCEEEEEecCCCCccHHHHHHHHhcCCCc
Confidence 34677899999999999999999998643
No 143
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.87 E-value=21 Score=36.17 Aligned_cols=10 Identities=30% Similarity=0.521 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 000510 893 KLEKRVEELT 902 (1456)
Q Consensus 893 kLe~kv~eL~ 902 (1456)
.++.++..++
T Consensus 27 ~~E~E~~~l~ 36 (120)
T PF12325_consen 27 RLEGELASLQ 36 (120)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 144
>PRK04863 mukB cell division protein MukB; Provisional
Probab=86.74 E-value=1.8e+02 Score=42.00 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 939 LTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 977 (1456)
Q Consensus 939 l~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q 977 (1456)
+...+...+.++..++.++.++++++..++++.+.++++
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444333
No 145
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=86.69 E-value=0.59 Score=55.94 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=24.8
Q ss_pred HHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 142 ~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
.+++.+ ..|+|+|+.|||||+..+.++.++.
T Consensus 155 ~~v~~~--~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 155 HAVISK--KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHHHcC--CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 334444 4699999999999999999888873
No 146
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.66 E-value=1.4e+02 Score=40.75 Aligned_cols=186 Identities=16% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HH
Q 000510 800 QRSYLTVRSSAMILQTGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQCGWRCRVARRELRK-LK 878 (1456)
Q Consensus 800 Rk~~~~~r~a~i~iQs~~Rg~laRr~~~~~r~~~aai~IQ~~~R~~~~R~~y~~~~~a~i~iQ~~~R~~~aRrel~~-Lk 878 (1456)
+..+.........++..++....+-.-...+..+....+|+.......-..-.....+. .+...--....+++++ .-
T Consensus 791 ~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~--~~k~~~d~~~l~~~~~~ie 868 (1293)
T KOG0996|consen 791 SDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAA--VLKKVVDKKRLKELEEQIE 868 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhccCcHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---------------------------------HHHHHHHHH
Q 000510 879 MAARETGALQEAKNKLEKRVEELTWRLQIEKRLRGLLQ---------------------------------SQTQTADEA 925 (1456)
Q Consensus 879 ~ea~~~~~l~~~~~kLe~kv~eL~~rl~~ek~~~~~le---------------------------------~l~~~~~el 925 (1456)
...+++..+++...+ +.++.+++..+..--....+.+ ..+..+.++
T Consensus 869 ~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~l 947 (1293)
T KOG0996|consen 869 ELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSEL 947 (1293)
T ss_pred HHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHh
Q 000510 926 KQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQALAISPTAKAL 988 (1456)
Q Consensus 926 e~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q~~~l~e~~~~l 988 (1456)
+....+.+.+.+.|..+...++.+..+++.++.+-++.+.++.++...++.++.........+
T Consensus 948 e~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~l 1010 (1293)
T KOG0996|consen 948 EREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENEL 1010 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 147
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=86.61 E-value=0.36 Score=52.77 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.5
Q ss_pred eEEEecCCCCCCchhhHHHHHHHH
Q 000510 150 NSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
+.|+|.|.||||||+..+.+...+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 579999999999999988885543
No 148
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=86.60 E-value=0.36 Score=50.12 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=20.1
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yl 173 (1456)
|+|.|.||||||+.++.+++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999998875
No 149
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.45 E-value=0.94 Score=51.55 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 136 GDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 136 A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
|-.+.+.+.......++++.|++|+|||..+..+.+++..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3445555555556679999999999999999988887764
No 150
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=86.40 E-value=0.35 Score=51.45 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.7
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla 174 (1456)
|++.|.||||||+.++.+-+.+-
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 68899999999999999998873
No 151
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=86.32 E-value=0.42 Score=52.34 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=19.4
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yl 173 (1456)
|.|+|-||||||+.++.+...+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999998887764
No 152
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=86.29 E-value=0.44 Score=57.53 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=25.6
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
..--|+|+|++|||||++.+.+++++..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4689999999999999999999999864
No 153
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=86.27 E-value=0.66 Score=56.23 Aligned_cols=35 Identities=29% Similarity=0.601 Sum_probs=29.0
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 141 ~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
+.....+.+.+|+|+|++|+|||.+++.+++.|..
T Consensus 32 ~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 32 RPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 33344667889999999999999999999998854
No 154
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=86.23 E-value=33 Score=41.92 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000510 822 ARNEFRLRKRTKAAIIAQAQWRCHQAYSYY 851 (1456)
Q Consensus 822 aRr~~~~~r~~~aai~IQ~~~R~~~~R~~y 851 (1456)
.-.++....++.||..+|..|.-|+..+-+
T Consensus 354 mDtqLTk~~KnAAA~VLqeTW~i~K~trl~ 383 (489)
T KOG3684|consen 354 MDTQLTKEHKNAAANVLQETWLIYKHTKLV 383 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334445556778888999999888766554
No 155
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=86.18 E-value=0.44 Score=54.36 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=26.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhcC
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~~~~ 178 (1456)
.+..++-+-||||+|||++.|.+++-+--.+|
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G 68 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc
Confidence 35667889999999999999999998764443
No 156
>PRK00889 adenylylsulfate kinase; Provisional
Probab=86.18 E-value=0.69 Score=49.88 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=25.8
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
+...|+|.|-+|||||+.++.+..+|...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999753
No 157
>PHA02562 46 endonuclease subunit; Provisional
Probab=86.17 E-value=14 Score=47.64 Aligned_cols=15 Identities=40% Similarity=0.778 Sum_probs=7.1
Q ss_pred EEecCCCCCCchhhH
Q 000510 152 ILVSGESGAGKTETT 166 (1456)
Q Consensus 152 IiisGESGaGKTe~~ 166 (1456)
.+|+|.+|||||+..
T Consensus 30 ~~i~G~NG~GKStll 44 (562)
T PHA02562 30 TLITGKNGAGKSTML 44 (562)
T ss_pred EEEECCCCCCHHHHH
Confidence 344455555554443
No 158
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=86.16 E-value=1.1e+02 Score=39.84 Aligned_cols=7 Identities=29% Similarity=0.876 Sum_probs=3.8
Q ss_pred HHHHHHh
Q 000510 1312 ELEQWCH 1318 (1456)
Q Consensus 1312 ~LE~W~~ 1318 (1456)
.||+|+.
T Consensus 954 tIEdwil 960 (1265)
T KOG0976|consen 954 TIEDWIL 960 (1265)
T ss_pred cccccee
Confidence 4566653
No 159
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.08 E-value=28 Score=36.56 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 000510 891 KNKLEKRVEELTWRL 905 (1456)
Q Consensus 891 ~~kLe~kv~eL~~rl 905 (1456)
...++.+|..|+.++
T Consensus 30 ~~~~E~EI~sL~~K~ 44 (143)
T PF12718_consen 30 NEQKEQEITSLQKKN 44 (143)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 160
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=85.99 E-value=1.5e+02 Score=40.36 Aligned_cols=86 Identities=20% Similarity=0.276 Sum_probs=45.3
Q ss_pred CCCCCchhh-HHHHhhccChhHHHHHHhhCCCCc---cChhhHHhhhhccccCcccCCCchHHHHHHHHHHhCC-CCeee
Q 000510 638 KPSIFENFN-VIQQLRCGGVLEAIRISCAGYPTR---RTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL-KGYQI 712 (1456)
Q Consensus 638 ~p~~fd~~~-v~~QLr~~gvle~iri~~~gyp~r---~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~ll~~~~~-~~~qi 712 (1456)
+|..|++.. |-++++-.|=...+.-+..|=-+. -....-+.+|.+=+.+.+. .-..++.+..|..... +.|+
T Consensus 125 k~eiyG~~IiIER~I~~~~S~~~~~~~~~grvVStKk~dl~~vv~~f~I~veNP~~--~lsQD~aR~FL~~~~p~dkYk- 201 (1074)
T KOG0250|consen 125 KPEIYGNSIIIERTIRRSSSTYYLLRSANGRVVSTKKEDLDTVVDHFNIQVENPMF--VLSQDAARSFLANSNPKDKYK- 201 (1074)
T ss_pred ChhhcCCeeEEEEeeccccchHHHHhhccCccccccHHHHHHHHHHhCcCCCCcch--hhcHHHHHHHHhcCChHHHHH-
Confidence 466677653 345566666555444344443322 2334455666654432111 1234566777766554 3464
Q ss_pred ccceeecccchhhHHHHH
Q 000510 713 GKTKVFLRAGQMAELDAR 730 (1456)
Q Consensus 713 GkTkVFlr~~~~~~Le~~ 730 (1456)
.||++.++..+...
T Consensus 202 ----lfmkaT~L~qi~~~ 215 (1074)
T KOG0250|consen 202 ----LFMKATQLEQITES 215 (1074)
T ss_pred ----HHHHHhHHHHHHHH
Confidence 49999877665543
No 161
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=85.85 E-value=1.8e+02 Score=41.11 Aligned_cols=182 Identities=14% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000510 800 QRSYLTVRSSAMILQTGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQCGWRCRVARRELRKLKM 879 (1456)
Q Consensus 800 Rk~~~~~r~a~i~iQs~~Rg~laRr~~~~~r~~~aai~IQ~~~R~~~~R~~y~~~~~a~i~iQ~~~R~~~aRrel~~Lk~ 879 (1456)
......+...+..++....-....+.+...........+...+........-.........-...--.......-..+..
T Consensus 192 ~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (1179)
T TIGR02168 192 EDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEE 271 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 880 AARETGALQEAKNKLEKRVEELTWRLQIEKRLRGLLQ----SQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQD 955 (1456)
Q Consensus 880 ea~~~~~l~~~~~kLe~kv~eL~~rl~~ek~~~~~le----~l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~ 955 (1456)
.......++.....++.++..+...+...+.....++ .++....++..++..++.+..++..++...+.++..++.
T Consensus 272 l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 351 (1179)
T TIGR02168 272 LRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE 351 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000510 956 SVQRLAEKVSNLESENQVLRQQALAI 981 (1456)
Q Consensus 956 el~~lee~l~~le~e~~~L~~q~~~l 981 (1456)
++..+++.+..++.+...+.......
T Consensus 352 ~~~~~~~~l~~~~~~~~~~~~~~~~~ 377 (1179)
T TIGR02168 352 ELESLEAELEELEAELEELESRLEEL 377 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 162
>PRK14738 gmk guanylate kinase; Provisional
Probab=85.83 E-value=0.52 Score=52.49 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~y 172 (1456)
....-|||+|.||||||+.++.++..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46788999999999999988888764
No 163
>PRK12704 phosphodiesterase; Provisional
Probab=85.81 E-value=33 Score=43.74 Aligned_cols=15 Identities=7% Similarity=-0.152 Sum_probs=7.8
Q ss_pred HhHHHHHHHHHHhhc
Q 000510 1331 ELRHIRQAVGFLVIH 1345 (1456)
Q Consensus 1331 ~L~~i~QA~~lLq~~ 1345 (1456)
.+..|+++++.|...
T Consensus 415 ~~a~IV~~ADaLsa~ 429 (520)
T PRK12704 415 IEAVLVAAADAISAA 429 (520)
T ss_pred HHHHHHHHHHHHhCc
Confidence 345555555555543
No 164
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=85.78 E-value=0.59 Score=48.89 Aligned_cols=25 Identities=40% Similarity=0.444 Sum_probs=22.7
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHh
Q 000510 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
++|+|+||+|||+.++.++..++.-
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~ 26 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK 26 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999998763
No 165
>PLN03025 replication factor C subunit; Provisional
Probab=85.74 E-value=0.89 Score=54.24 Aligned_cols=56 Identities=23% Similarity=0.428 Sum_probs=40.0
Q ss_pred HHHhhcCCcCCCCchhhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 117 MEQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 117 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
.++|+-....++-.|-=.+ ...+.+...+.-..++++|++|+|||++++.+.+.+.
T Consensus 4 ~~kyrP~~l~~~~g~~~~~--~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAV--SRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred hhhcCCCCHHHhcCcHHHH--HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567666665554443322 2355666666667899999999999999999998874
No 166
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=85.70 E-value=0.54 Score=49.48 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=22.2
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~ 175 (1456)
|+|.|.||||||+.++.+.+++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999863
No 167
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=85.67 E-value=25 Score=39.08 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 915 LQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLA 961 (1456)
Q Consensus 915 le~l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~le 961 (1456)
++.++.+.++...+++.++++...+.++.+++..+...|.++-+.+.
T Consensus 160 ~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 160 LEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444433333
No 168
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=85.64 E-value=32 Score=33.80 Aligned_cols=89 Identities=20% Similarity=0.196 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Q 000510 878 KMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRGLLQSQTQTA------------DEAKQAFTVSEAKNGELTKKLKD 945 (1456)
Q Consensus 878 k~ea~~~~~l~~~~~kLe~kv~eL~~rl~~ek~~~~~le~l~~~~------------~ele~~l~~~e~~~~el~~~~~e 945 (1456)
..++.....|+....+.-.....++.+|.+.+-...++..++... .++++......++++-..+++..
T Consensus 8 ee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~~Eikr 87 (120)
T KOG3478|consen 8 EEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFISKEIKR 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333444444444333333333334445554444555555333211 12333333344444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000510 946 AEKRVDELQDSVQRLAEKVSN 966 (1456)
Q Consensus 946 le~~i~~L~~el~~lee~l~~ 966 (1456)
.|..++..+++.....+.+.+
T Consensus 88 ~e~~i~d~q~e~~k~R~~v~k 108 (120)
T KOG3478|consen 88 LENQIRDSQEEFEKQREAVIK 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444443333
No 169
>PF13245 AAA_19: Part of AAA domain
Probab=85.63 E-value=0.9 Score=42.14 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=23.5
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
.+...+|.|..|+|||++...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4566778999999999888888888875
No 170
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=85.47 E-value=0.53 Score=57.07 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=24.3
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
+--|+|+|++|||||++.+.+++|+..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 447999999999999999999999865
No 171
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=85.47 E-value=0.41 Score=51.75 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.7
Q ss_pred eEEEecCCCCCCchhhHHHHHHHH
Q 000510 150 NSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
+-|+|.|.||||||+.++.+++.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 568999999999999999999865
No 172
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=85.40 E-value=0.62 Score=54.06 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=25.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
+....|+|+|+.|||||++.+.++.++-.
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred ccceEEEEECCCccccchHHHHHhhhccc
Confidence 35789999999999999999999888754
No 173
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=85.35 E-value=1.1 Score=52.38 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=24.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
+...-|-|+|.||||||++++.+...+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSR 88 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45677889999999999999988877754
No 174
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=85.26 E-value=0.59 Score=50.44 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=23.5
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 151 SILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
-|.|+|.||||||+..+.++..|...
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHHhhc
Confidence 67899999999999999999999754
No 175
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=85.15 E-value=0.57 Score=52.04 Aligned_cols=23 Identities=43% Similarity=0.570 Sum_probs=20.1
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla 174 (1456)
|-|+|-||||||+-||.+..-|-
T Consensus 11 IgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhC
Confidence 44699999999999999998875
No 176
>PRK12704 phosphodiesterase; Provisional
Probab=84.99 E-value=37 Score=43.32 Aligned_cols=10 Identities=0% Similarity=0.318 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 000510 1085 SIFDRIIQTI 1094 (1456)
Q Consensus 1085 ~ll~~ii~~I 1094 (1456)
.+..++-..+
T Consensus 286 e~~~~~~~~~ 295 (520)
T PRK12704 286 EMVEKARKEV 295 (520)
T ss_pred HHHHHHHHHH
Confidence 3333433333
No 177
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=84.98 E-value=2.8 Score=36.15 Aligned_cols=51 Identities=22% Similarity=0.269 Sum_probs=42.0
Q ss_pred ccccCcEEEEeCCCCCeEeEEEEEEcC-CeEEEEeCC-CcEEEEecccccCCC
Q 000510 6 NIIVGSHVWVEDPVLAWINGEVMWING-QEVHVNCTN-GKKVVTSVSKVFPED 56 (1456)
Q Consensus 6 ~~~~g~~vwv~~~~~~w~~~~v~~~~~-~~~~~~~~~-g~~~~~~~~~~~~~~ 56 (1456)
.+.+|+.|=++..+..|-.|+|+++++ +.+.|...| |....++.+++.+..
T Consensus 2 ~~~~G~~~~a~~~d~~wyra~I~~~~~~~~~~V~f~D~G~~~~v~~~~l~~l~ 54 (57)
T smart00333 2 TFKVGDKVAARWEDGEWYRARIIKVDGEQLYEVFFIDYGNEEVVPPSDLRPLP 54 (57)
T ss_pred CCCCCCEEEEEeCCCCEEEEEEEEECCCCEEEEEEECCCccEEEeHHHeecCC
Confidence 467899998887677899999999988 778888766 988888888776653
No 178
>PRK03846 adenylylsulfate kinase; Provisional
Probab=84.87 E-value=1 Score=49.76 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=27.6
Q ss_pred hcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 145 NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 145 ~~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
...+...|.|+|.||||||+.++.+...|...
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~ 51 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34567899999999999999999999988654
No 179
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=84.83 E-value=0.58 Score=48.97 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=21.5
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000510 151 SILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yl 173 (1456)
+|+|.|.+|||||+.+|.+-.+|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998887
No 180
>PRK12377 putative replication protein; Provisional
Probab=84.69 E-value=1.3 Score=50.83 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=33.2
Q ss_pred hhhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 131 HVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 131 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
|+++.|..-...... ..++++++|.+|+|||..+..|.++|..-
T Consensus 85 ~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 85 YALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred HHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 566655554443332 35799999999999999999999999753
No 181
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=84.55 E-value=0.7 Score=48.61 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=21.4
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla 174 (1456)
|.|||.+|||||+-++.+-.++-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 88999999999999999998875
No 182
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=84.51 E-value=91 Score=36.64 Aligned_cols=62 Identities=18% Similarity=0.299 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 000510 918 QTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDS-VQRLAEKVSNLESENQVLRQQAL 979 (1456)
Q Consensus 918 l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~e-l~~lee~l~~le~e~~~L~~q~~ 979 (1456)
+.+++..++.+....+..++.+..++-++|..+++-++- ++.|..++.+|+.++..|+.++.
T Consensus 140 L~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 140 LQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444444444444555555555555666666555443 35566666777777776666653
No 183
>PRK06217 hypothetical protein; Validated
Probab=84.49 E-value=0.58 Score=50.98 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.4
Q ss_pred EEEecCCCCCCchhhHHHHHHHHH
Q 000510 151 SILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla 174 (1456)
-|+|+|-||||||+.++.+.+.|-
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 499999999999999999988763
No 184
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=84.49 E-value=1.5 Score=57.46 Aligned_cols=45 Identities=22% Similarity=0.303 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 132 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
+-.|+..-...+...+.+.++.|+|.+|.|||.+++.+++-|...
T Consensus 764 IeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 764 IKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 444443333333334555677899999999999999999998653
No 185
>PRK09039 hypothetical protein; Validated
Probab=84.38 E-value=15 Score=44.24 Aligned_cols=18 Identities=6% Similarity=0.152 Sum_probs=11.9
Q ss_pred cccchHHHHHHHHHHHHh
Q 000510 1079 FEVERTSIFDRIIQTISG 1096 (1456)
Q Consensus 1079 ~~~e~~~ll~~ii~~I~~ 1096 (1456)
+.++....+++++..|+.
T Consensus 235 L~~~~~~~L~~ia~~l~~ 252 (343)
T PRK09039 235 LNPEGQAEIAKLAAALIE 252 (343)
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 455556777777777665
No 186
>PRK09099 type III secretion system ATPase; Provisional
Probab=84.38 E-value=2.1 Score=53.03 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 138 AAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.+...+..-++.|.+.|.|.||+|||+..+.+....
T Consensus 152 ~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~ 187 (441)
T PRK09099 152 RIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARGT 187 (441)
T ss_pred eeccceeeecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345556566789999999999999999887776543
No 187
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=84.37 E-value=2.1 Score=52.96 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 136 GDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 136 A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.-.+...+..-++.|.+.|.|.||+|||+..+.+....
T Consensus 132 G~~~id~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 169 (422)
T TIGR02546 132 GVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGA 169 (422)
T ss_pred CceeehhhccccCCCEEEEECCCCCChHHHHHHHhCCC
Confidence 34456666677899999999999999999988877654
No 188
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=84.25 E-value=1.6e+02 Score=39.11 Aligned_cols=164 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 826 FRLRKRTKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQCGWRCRV-----ARRELRKLKMAARETGALQEAKNKLEKRVEE 900 (1456)
Q Consensus 826 ~~~~r~~~aai~IQ~~~R~~~~R~~y~~~~~a~i~iQ~~~R~~~-----aRrel~~Lk~ea~~~~~l~~~~~kLe~kv~e 900 (1456)
+....++.+-...|----.-.+|+...+.+.....+|...-.-. +|.+-.+|+.+.....+-+....+....+++
T Consensus 335 ~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee 414 (980)
T KOG0980|consen 335 IEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEE 414 (980)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 901 LTWRLQIEKRLRGLLQ-----------SQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLES 969 (1456)
Q Consensus 901 L~~rl~~ek~~~~~le-----------~l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~ 969 (1456)
+..+....+..-..+. ++-.+.++..++++..+....++.+++.++...+.+++.+....+.+.....+
T Consensus 415 ~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~ 494 (980)
T KOG0980|consen 415 AENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAK 494 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q ss_pred HHHHHHHHHHhcCchHHHhh
Q 000510 970 ENQVLRQQALAISPTAKALA 989 (1456)
Q Consensus 970 e~~~L~~q~~~l~e~~~~l~ 989 (1456)
..+.++++...+-+....+.
T Consensus 495 ~le~l~~El~~l~~e~~~lq 514 (980)
T KOG0980|consen 495 ALESLRQELALLLIELEELQ 514 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 189
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=84.24 E-value=1.1 Score=53.15 Aligned_cols=55 Identities=24% Similarity=0.357 Sum_probs=36.3
Q ss_pred HHhhcCCcCCCCchhhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 118 EQYKGAAFGELSPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 118 ~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
+.|+-....++..|--+ -...+.....+..-.++++|+.|+|||+.++.+.+.+.
T Consensus 9 ~kyrP~~~~~~~g~~~~--~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEI--VERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred hhhCCCcHHHhcCcHHH--HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 45554444444444322 23445555555545689999999999999999988874
No 190
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=84.21 E-value=0.96 Score=55.51 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=28.6
Q ss_pred HHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 142 ~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
.....+.+.+++|+|.+|+|||.+++.+++.+..
T Consensus 48 ~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 48 PALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3344567789999999999999999999998854
No 191
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=84.19 E-value=46 Score=42.42 Aligned_cols=15 Identities=13% Similarity=-0.126 Sum_probs=9.6
Q ss_pred HhHHHHHHHHHHhhc
Q 000510 1331 ELRHIRQAVGFLVIH 1345 (1456)
Q Consensus 1331 ~L~~i~QA~~lLq~~ 1345 (1456)
.+..|+++++.|...
T Consensus 409 ~~a~IV~~AD~lsa~ 423 (514)
T TIGR03319 409 IEAVLVAAADALSAA 423 (514)
T ss_pred HHHHHHHHHHHhcCC
Confidence 566666777666654
No 192
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=84.18 E-value=0.58 Score=52.68 Aligned_cols=25 Identities=40% Similarity=0.583 Sum_probs=20.9
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHH
Q 000510 151 SILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
-+++-|.||||||++.|+|-+-+.-
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiep 53 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEP 53 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4678999999999999998776543
No 193
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=84.17 E-value=0.52 Score=48.67 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.5
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla 174 (1456)
|++.|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999999887654
No 194
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=84.13 E-value=0.69 Score=49.78 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.0
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~ 175 (1456)
|+|+|++|+|||+..+.++++|..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999998854
No 195
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=83.99 E-value=0.53 Score=58.84 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=25.5
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
..+..-|-||||||||+++..+|.++-.-
T Consensus 34 ~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 34 PGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 45677899999999999999999998754
No 196
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=83.92 E-value=1.4 Score=49.72 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=25.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
..+..++|.|++|+|||..++.+.+.+..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999887654
No 197
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.88 E-value=1.2 Score=55.53 Aligned_cols=54 Identities=19% Similarity=0.411 Sum_probs=38.9
Q ss_pred HHhhcCCcCCC--CchhhhHHHHHHHHHHhcC-CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 118 EQYKGAAFGEL--SPHVFAVGDAAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 118 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~-~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
++|+-..+.++ ..|+.+. .+.+...+ -.+++|++|+.|.|||++++.+.++|-+
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHhCCCCHHHHhChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46665555554 4566543 44444444 4788999999999999999999998865
No 198
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=83.81 E-value=40 Score=38.40 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 918 QTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQAL 979 (1456)
Q Consensus 918 l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q~~ 979 (1456)
++.+...+-+.++.+++..+.+.-.+...|..+.-++-++......+..|+.|++.++.++.
T Consensus 65 LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 65 LKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555555555555555555566666666665555543
No 199
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=83.69 E-value=1.1 Score=57.07 Aligned_cols=30 Identities=17% Similarity=0.453 Sum_probs=25.9
Q ss_pred HhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 144 INEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 144 ~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.....++.|+|.||+|+|||..++.+.++.
T Consensus 81 l~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 81 LCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445678999999999999999999998764
No 200
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=83.67 E-value=1.3 Score=45.11 Aligned_cols=27 Identities=44% Similarity=0.582 Sum_probs=23.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
+....|+++|+=|||||+-+|.+.+.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 567899999999999999999988877
No 201
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=83.66 E-value=8.1 Score=35.47 Aligned_cols=44 Identities=25% Similarity=0.333 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 933 EAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 976 (1456)
Q Consensus 933 e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~ 976 (1456)
+.++..+...+..++.++..|+++...+.+....|..+|+.|++
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444444444444443
No 202
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.65 E-value=1.1 Score=56.27 Aligned_cols=57 Identities=25% Similarity=0.388 Sum_probs=40.0
Q ss_pred HHhhcCCcCCC--CchhhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000510 118 EQYKGAAFGEL--SPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1456)
Q Consensus 118 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~ 177 (1456)
.+|+-..+.++ .+|+-..-..|+ ...+-+|+++++|..|.|||++++++-+.|-+..
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~---~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~ 63 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAF---TLNKIPQSILLVGASGVGKTTCARIISLCLNCSN 63 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHH---HcCCCCceEEEECCCCccHHHHHHHHHHHHcCcC
Confidence 46666555554 355544333332 2355689999999999999999999999886543
No 203
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=83.63 E-value=31 Score=45.74 Aligned_cols=40 Identities=28% Similarity=0.395 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 000510 944 KDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQALAISP 983 (1456)
Q Consensus 944 ~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q~~~l~e 983 (1456)
.........+...++.+++.+..+++||+.|-.++..++.
T Consensus 519 kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 519 KTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333333444445555666666677777777777655444
No 204
>PRK03918 chromosome segregation protein; Provisional
Probab=83.62 E-value=24 Score=48.19 Aligned_cols=18 Identities=28% Similarity=0.599 Sum_probs=14.6
Q ss_pred EEecCCCCCCchhhHHHH
Q 000510 152 ILVSGESGAGKTETTKML 169 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~ 169 (1456)
-+|+|++|||||+....|
T Consensus 26 ~~i~G~nG~GKStil~ai 43 (880)
T PRK03918 26 NLIIGQNGSGKSSILEAI 43 (880)
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 469999999999876543
No 205
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=83.54 E-value=1.4 Score=47.17 Aligned_cols=34 Identities=29% Similarity=0.310 Sum_probs=29.1
Q ss_pred hcCCCeEEEecCCCCCCchhhHHHHHHHHHHhcC
Q 000510 145 NEGKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1456)
Q Consensus 145 ~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~ 178 (1456)
...+.-.|-++|-||||||+.+..+-+.|...|-
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~ 52 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGY 52 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCC
Confidence 3456779999999999999999999999987763
No 206
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=83.52 E-value=0.81 Score=47.69 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=24.4
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhc
Q 000510 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla~~~ 177 (1456)
.|.|.|-+|||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 378999999999999999999998654
No 207
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=83.41 E-value=1 Score=55.53 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=25.3
Q ss_pred ccccCcEEEEeCCCCCeEeEEEEEEcCCeEEEEe
Q 000510 6 NIIVGSHVWVEDPVLAWINGEVMWINGQEVHVNC 39 (1456)
Q Consensus 6 ~~~~g~~vwv~~~~~~w~~~~v~~~~~~~~~~~~ 39 (1456)
....|+.|+|.... +.+.|+|+..+++.+.+..
T Consensus 46 ~~~iGe~~~i~~~~-~~~~~eVv~~~~~~~~l~~ 78 (450)
T PRK06002 46 FVRLGDFVAIRADG-GTHLGEVVRVDPDGVTVKP 78 (450)
T ss_pred CCCCCCEEEEECCC-CcEEEEEEEEeCCeEEEEE
Confidence 56789999995333 3488999999998877664
No 208
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.38 E-value=54 Score=41.26 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 918 QTQTADEAKQAFTVSEAKNGELTKKLK 944 (1456)
Q Consensus 918 l~~~~~ele~~l~~~e~~~~el~~~~~ 944 (1456)
+..+..++...+.+++.+.+.+.+++-
T Consensus 337 mn~Er~~l~r~l~~i~~~~d~l~k~vw 363 (581)
T KOG0995|consen 337 MNLERNKLKRELNKIQSELDRLSKEVW 363 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444333
No 209
>PRK13764 ATPase; Provisional
Probab=83.38 E-value=0.86 Score=58.30 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=24.0
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
...|+|+|.+|||||+++..++.|+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 355999999999999999999999864
No 210
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=83.35 E-value=0.83 Score=52.43 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.1
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~ 175 (1456)
|.|+|-||||||+.++.+.+.|..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999988888753
No 211
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=83.18 E-value=89 Score=35.96 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 945 DAEKRVDELQDSVQRLAEKVSNLESENQVLRQQAL 979 (1456)
Q Consensus 945 ele~~i~~L~~el~~lee~l~~le~e~~~L~~q~~ 979 (1456)
.+..++..-.+.++++++.+..|..|++.|..+..
T Consensus 190 ~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 190 VMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555555666666666666666666666666655
No 212
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=83.12 E-value=0.7 Score=48.35 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=19.6
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yl 173 (1456)
|+++|.+|||||+.++.+.+-+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 7899999999999999987764
No 213
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=82.81 E-value=1.7 Score=53.61 Aligned_cols=63 Identities=21% Similarity=0.183 Sum_probs=42.9
Q ss_pred CCCHHHHHHhhcCCcCCCCchhhhHHHHHHHHHHhcC-----------CCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 111 LYDTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINEG-----------KSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 111 ly~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~-----------~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
+.++..+..|-....-...+-+=+++..+|.++.+-. ....|++.|++|+|||+.++.+-+.+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 5577777777665444444555566666665443321 24789999999999999999886654
No 214
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=82.74 E-value=9 Score=42.29 Aligned_cols=57 Identities=26% Similarity=0.326 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 921 TADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 977 (1456)
Q Consensus 921 ~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q 977 (1456)
.+..++.+...++.++..+...+++.+..+..+++++..+.-.+..+++.+..|+.+
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444444444444444333
No 215
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=82.72 E-value=0.73 Score=54.85 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=26.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
++.|++=|-||||||||+....+++-+.+-
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 578999999999999999999998887654
No 216
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=82.71 E-value=1 Score=56.68 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 139 AYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 139 Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
.++.+... ..--|+|+|++|||||++...+++++.
T Consensus 233 ~l~~~~~~-~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIRR-PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 34444432 334689999999999999998888774
No 217
>PRK07667 uridine kinase; Provisional
Probab=82.68 E-value=0.92 Score=49.94 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=23.0
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 150 NSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
--|-|+|-||||||+.++.+.+.|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36678999999999999999999865
No 218
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=82.68 E-value=1.4 Score=55.74 Aligned_cols=56 Identities=21% Similarity=0.432 Sum_probs=39.1
Q ss_pred HHhhcCCcCCCC--chhhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 118 EQYKGAAFGELS--PHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 118 ~~y~~~~~~~~~--PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
++|+-..+.++. +|+...-..| +...+-.++++++|+.|.|||++++.+.+.|-+.
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~a---i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYT---ILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHH---HHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 456655555543 4444432222 3345668999999999999999999999998654
No 219
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=82.68 E-value=0.9 Score=49.09 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.5
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000510 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
++.|+|.|.+|||||+.++.+...+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999988775
No 220
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=82.68 E-value=17 Score=45.71 Aligned_cols=25 Identities=20% Similarity=0.541 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 946 AEKRVDELQDSVQRLAEKVSNLESE 970 (1456)
Q Consensus 946 le~~i~~L~~el~~lee~l~~le~e 970 (1456)
++.++..|+.++.+....+..|+.+
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~ 503 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERK 503 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 221
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=82.68 E-value=2.3 Score=52.72 Aligned_cols=40 Identities=25% Similarity=0.396 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHH
Q 000510 133 FAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 133 faiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~y 172 (1456)
|...-.+...+..-++.|.+.|.|.||+|||+..+.++.+
T Consensus 147 l~TGi~~iD~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 147 LSTGVRSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred ccceeeeeeeccccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3344455566666778999999999999999988877765
No 222
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=82.62 E-value=0.79 Score=49.50 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=20.5
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~y 172 (1456)
+---+.+.|.||||||+..|+|+.-
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 3445789999999999999988754
No 223
>PRK04182 cytidylate kinase; Provisional
Probab=82.60 E-value=0.77 Score=49.42 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.5
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000510 151 SILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yl 173 (1456)
-|+|+|.+|||||+.++.+-..|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999987655
No 224
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=82.46 E-value=2 Score=44.85 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=26.2
Q ss_pred cCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 146 EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 146 ~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
-..+=.|+++|+=|||||+-+|-+.+.|..
T Consensus 22 l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 22 LKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 356778999999999999999999999864
No 225
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=82.46 E-value=0.94 Score=49.15 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=23.0
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
...|+|.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999998764
No 226
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=82.44 E-value=0.82 Score=48.86 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.0
Q ss_pred CeEEEecCCCCCCchhhHHHHHH
Q 000510 149 SNSILVSGESGAGKTETTKMLMR 171 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~ 171 (1456)
...|+|.|+||+|||++|=-+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999877775
No 227
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=82.40 E-value=0.89 Score=49.43 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=21.0
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000510 151 SILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yl 173 (1456)
-|+|.|-||||||+-||.|.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999884
No 228
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=82.33 E-value=0.9 Score=50.99 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=24.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
.+..+.=|.||||+|||+.++.++-+...
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 46678889999999999999998877644
No 229
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.32 E-value=12 Score=33.29 Aligned_cols=37 Identities=22% Similarity=0.414 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 941 KKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 977 (1456)
Q Consensus 941 ~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q 977 (1456)
-+++++.++...|..+.+........|+.||+.++++
T Consensus 25 mEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 25 MEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443
No 230
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=82.29 E-value=0.9 Score=49.30 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000510 151 SILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yl 173 (1456)
.|+|.|.+|||||+.++.+.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998776
No 231
>PRK04040 adenylate kinase; Provisional
Probab=82.29 E-value=0.86 Score=50.01 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.7
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHH
Q 000510 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
.-|+|+|.+|+|||+.++.+.+.|.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999998883
No 232
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=82.23 E-value=1e+02 Score=35.55 Aligned_cols=47 Identities=15% Similarity=0.285 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 929 FTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 975 (1456)
Q Consensus 929 l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~ 975 (1456)
++..+.++.+.++++.+...++.+....+.+++.+-+.+.+....++
T Consensus 209 Le~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~ 255 (269)
T PF05278_consen 209 LEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIK 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333443444444444433333333333333
No 233
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=82.02 E-value=1.2 Score=39.48 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=17.5
Q ss_pred EEEecCCCCCCchhhHHHHHHH
Q 000510 151 SILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~y 172 (1456)
..+|+|++|||||+..-.+.--
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999876655433
No 234
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=81.98 E-value=67 Score=35.39 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 920 QTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLE 968 (1456)
Q Consensus 920 ~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le 968 (1456)
..+.+++.++.+++.+...+..+.++...++..++...+.+++.+...+
T Consensus 131 ~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 131 SEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444455555555554444444443
No 235
>PHA00729 NTP-binding motif containing protein
Probab=81.85 E-value=1.7 Score=48.80 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=24.7
Q ss_pred cCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 146 EGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 146 ~~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
+..-..|+|+|.+|+|||+.|..+.+.+.
T Consensus 14 ~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 14 NNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred cCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33446899999999999999999998764
No 236
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=81.80 E-value=2.3 Score=52.30 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 138 AAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.|...+..-++.|.+.|.|.||+|||+..+.+++..
T Consensus 126 ~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~ 161 (413)
T TIGR03497 126 KAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNA 161 (413)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334444445788999999999999999887766543
No 237
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=81.72 E-value=1.2 Score=47.83 Aligned_cols=27 Identities=44% Similarity=0.580 Sum_probs=23.9
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhc
Q 000510 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla~~~ 177 (1456)
.|+++|++|+|||+.+..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 478999999999999999999888654
No 238
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=81.72 E-value=0.95 Score=53.84 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=23.8
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 149 SNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
...|+|+|.+|||||+..+.++.++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~ 174 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVI 174 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 468999999999999999999988753
No 239
>PRK13342 recombination factor protein RarA; Reviewed
Probab=81.70 E-value=1.5 Score=54.32 Aligned_cols=43 Identities=26% Similarity=0.492 Sum_probs=33.5
Q ss_pred chhhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 130 PHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 130 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.|+... ....+.+...+...+|++.|++|+|||+.++.+.+.+
T Consensus 18 ~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 18 EHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344433 3556777777888899999999999999999987754
No 240
>PRK00106 hypothetical protein; Provisional
Probab=81.64 E-value=58 Score=41.52 Aligned_cols=12 Identities=25% Similarity=0.149 Sum_probs=4.9
Q ss_pred hHHHHHHHHHHh
Q 000510 1332 LRHIRQAVGFLV 1343 (1456)
Q Consensus 1332 L~~i~QA~~lLq 1343 (1456)
+..|+++++.|.
T Consensus 431 ~a~IV~~AD~ls 442 (535)
T PRK00106 431 IAVIVAAADALS 442 (535)
T ss_pred HHHHHHHHHHhc
Confidence 334444444333
No 241
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=81.56 E-value=0.96 Score=46.66 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.2
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yl 173 (1456)
|++.|++|+|||+.++.+.+-+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999998888877
No 242
>PRK03918 chromosome segregation protein; Provisional
Probab=81.43 E-value=66 Score=44.06 Aligned_cols=14 Identities=14% Similarity=0.086 Sum_probs=6.6
Q ss_pred CCCHHHHHHHHHhh
Q 000510 1384 SVSSEVISSMRVMM 1397 (1456)
Q Consensus 1384 ~vs~~vi~~~~~~~ 1397 (1456)
.+++.....|...+
T Consensus 824 ~lD~~~~~~l~~~l 837 (880)
T PRK03918 824 FLDEERRRKLVDIM 837 (880)
T ss_pred ccCHHHHHHHHHHH
Confidence 45555544444443
No 243
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=81.38 E-value=30 Score=40.50 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 950 VDELQDSVQRLAEKVSNLESENQVLRQ 976 (1456)
Q Consensus 950 i~~L~~el~~lee~l~~le~e~~~L~~ 976 (1456)
|..|..++-.++.+...+-.|+..|.+
T Consensus 236 It~LlsqivdlQ~r~k~~~~EnEeL~q 262 (306)
T PF04849_consen 236 ITSLLSQIVDLQQRCKQLAAENEELQQ 262 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 333333333333333333333333333
No 244
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=81.35 E-value=1.2 Score=54.00 Aligned_cols=41 Identities=24% Similarity=0.585 Sum_probs=32.2
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCcccHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVE 188 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie 188 (1456)
..|+|-+-|+|||||++..+++.|++-.-+|+-.-++.+|.
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIr 603 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIR 603 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHH
Confidence 46999999999999999999999999766554333444554
No 245
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=81.33 E-value=2.6e+02 Score=39.54 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=15.0
Q ss_pred EEEecCCCCCCchhhHHHH
Q 000510 151 SILVSGESGAGKTETTKML 169 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~ 169 (1456)
..+|+|++|||||...-.|
T Consensus 25 ~~~i~G~NGsGKS~ildAi 43 (1164)
T TIGR02169 25 FTVISGPNGSGKSNIGDAI 43 (1164)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4578999999999874444
No 246
>PRK15453 phosphoribulokinase; Provisional
Probab=81.28 E-value=1.1 Score=51.97 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=20.4
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000510 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.=-|.|+|-||||||+.++.+.+-|
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999988776554
No 247
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=81.23 E-value=2 Score=54.94 Aligned_cols=57 Identities=21% Similarity=0.370 Sum_probs=41.1
Q ss_pred HHHhhcCCcCCCC--chhhhHHHHHHHHHH-hcCCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000510 117 MEQYKGAAFGELS--PHVFAVGDAAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1456)
Q Consensus 117 ~~~y~~~~~~~~~--PHifaiA~~Ay~~m~-~~~~~QsIiisGESGaGKTe~~k~~~~yla~~~ 177 (1456)
.++|+-..+.++- +|+- ..+..+. ..+-.+++|++|+.|.|||+.++.+-+.|.+.+
T Consensus 7 ~~KyRP~~F~dIIGQe~iv----~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~ 66 (605)
T PRK05896 7 YRKYRPHNFKQIIGQELIK----KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN 66 (605)
T ss_pred HHHhCCCCHHHhcCcHHHH----HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 4567666665554 4443 3444444 446789999999999999999999999997543
No 248
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=81.16 E-value=1.3 Score=55.99 Aligned_cols=58 Identities=31% Similarity=0.458 Sum_probs=42.8
Q ss_pred HHHHhhcCCcCCCCchhhhHHHH--HHHHHHhcC-CCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 116 MMEQYKGAAFGELSPHVFAVGDA--AYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 116 ~~~~y~~~~~~~~~PHifaiA~~--Ay~~m~~~~-~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.+++|+-....++.-|-=.|.+- ....|.... ..+-+|++|.+|+|||++.|.+.+-|
T Consensus 9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred cchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 56788877788888887666543 344444443 35667789999999999999988876
No 249
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=81.15 E-value=93 Score=34.63 Aligned_cols=69 Identities=23% Similarity=0.331 Sum_probs=37.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 910 RLRGLLQSQTQTADEAKQAFTVSEA---KNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQA 978 (1456)
Q Consensus 910 ~~~~~le~l~~~~~ele~~l~~~e~---~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q~ 978 (1456)
++..-|+.++.+..+++..+...++ .+..+..++..++.++..|+-+-+.++.++.+++.|...|..+-
T Consensus 59 ~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 59 RLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555554443332 23344455556666666666666666666666666666665543
No 250
>PRK02224 chromosome segregation protein; Provisional
Probab=81.08 E-value=96 Score=42.50 Aligned_cols=137 Identities=17% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000510 839 QAQWRCHQAYSYYKKLQRAIIVSQCGWRCRVARRELRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRGLLQSQ 918 (1456)
Q Consensus 839 Q~~~R~~~~R~~y~~~~~a~i~iQ~~~R~~~aRrel~~Lk~ea~~~~~l~~~~~kLe~kv~eL~~rl~~ek~~~~~le~l 918 (1456)
+...+...++..+..............++.+.. ............++.....++.++.++...+...+.....++..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~l~~~l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~ 242 (880)
T PRK02224 166 EYRERASDARLGVERVLSDQRGSLDQLKAQIEE---KEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEV 242 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 919 TQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQA 978 (1456)
Q Consensus 919 ~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q~ 978 (1456)
-.+.......+..++...+.+..++.+++.++..+..++..+++.+..++.+...+...+
T Consensus 243 ~~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l 302 (880)
T PRK02224 243 LEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEA 302 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 251
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=81.07 E-value=1.3 Score=44.51 Aligned_cols=26 Identities=46% Similarity=0.781 Sum_probs=23.8
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhc
Q 000510 152 ILVSGESGAGKTETTKMLMRYLAYLG 177 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~~~ 177 (1456)
|+++|.+|+|||..+..+.++|+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g 27 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKG 27 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 89999999999999999999998743
No 252
>PRK06761 hypothetical protein; Provisional
Probab=80.96 E-value=0.94 Score=52.72 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=23.6
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 150 NSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
.-|+|+|.+|||||+.++.+.+.|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46999999999999999999999864
No 253
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=80.96 E-value=2 Score=55.87 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=29.0
Q ss_pred HHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 141 RAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 141 ~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
..+.....++.|+|.||+|+|||+.++.+.+.....
T Consensus 167 ~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~ 202 (615)
T TIGR02903 167 LAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKL 202 (615)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 344455678999999999999999999998876443
No 254
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=80.95 E-value=1.1 Score=49.38 Aligned_cols=48 Identities=23% Similarity=0.466 Sum_probs=29.4
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhcCCCCCCcccHHHHHhhcch-----HHHhccCc
Q 000510 152 ILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNP-----VLEAFGNA 204 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snp-----iLEaFGNA 204 (1456)
|.|+|.+|||||+.++++-++ |.. .-+...+...+++.++ |.+.||..
T Consensus 2 i~itG~~gsGKst~~~~l~~~----g~~-~i~~D~i~~~~~~~~~~~~~~i~~~fG~~ 54 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEEL----GAF-GISADRLAKRYTEPDSPILSELVSLLGPS 54 (196)
T ss_pred EEEECCCCccHHHHHHHHHHC----CCE-EEecchHHHHHHhcCcHHHHHHHHHhChh
Confidence 789999999999988866543 211 1112345555665433 66677763
No 255
>PRK08727 hypothetical protein; Validated
Probab=80.93 E-value=1.6 Score=49.54 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=25.8
Q ss_pred cCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 146 EGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 146 ~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
....+.|++.|+||+|||..+..+...+...
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3456789999999999999999988887654
No 256
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.87 E-value=1.8 Score=54.40 Aligned_cols=54 Identities=24% Similarity=0.475 Sum_probs=37.9
Q ss_pred HHhhcCCcCCC--CchhhhHHHHHHHHHHhcC-CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 118 EQYKGAAFGEL--SPHVFAVGDAAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 118 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~-~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
++|+-..+.+. ++|+ ....+.+...+ -.+++|++|+.|.|||+.++.+.+.+-.
T Consensus 6 ~kyRP~~~~divGq~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHCCCCHHHccCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45665555544 4565 33445555444 4578999999999999999999887743
No 257
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=80.83 E-value=0.96 Score=52.98 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=19.1
Q ss_pred CeEEEecCCCCCCchhhHHHH
Q 000510 149 SNSILVSGESGAGKTETTKML 169 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~ 169 (1456)
.+-|+|+|.||||||+.++.+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l 26 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL 26 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 467999999999999999988
No 258
>PRK06893 DNA replication initiation factor; Validated
Probab=80.76 E-value=2.2 Score=48.32 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 136 GDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 136 A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
+..+.+.+ ....+-++++.|.||+|||..+..+.+.+..-
T Consensus 27 ~~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 27 LDSLRKNF-IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred HHHHHHHh-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 33333444 34567789999999999999999999887654
No 259
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.71 E-value=26 Score=44.17 Aligned_cols=9 Identities=11% Similarity=0.054 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 000510 696 VACQMILDK 704 (1456)
Q Consensus 696 ~~~~~ll~~ 704 (1456)
+.+++|...
T Consensus 302 ~~V~KiAas 310 (652)
T COG2433 302 ETVKKIAAS 310 (652)
T ss_pred HHHHHHHHH
Confidence 333444433
No 260
>PRK06936 type III secretion system ATPase; Provisional
Probab=80.63 E-value=1.5 Score=54.02 Aligned_cols=41 Identities=17% Similarity=0.338 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 133 FAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 133 faiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
+.+.-.+...+..-.+.|.+.|.|.||+|||+..+.+.++.
T Consensus 146 l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~ 186 (439)
T PRK06936 146 LSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSA 186 (439)
T ss_pred CcCCcceeeeeEEecCCCEEEEECCCCCChHHHHHHHhcCC
Confidence 44444455566566789999999999999999888777654
No 261
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.61 E-value=26 Score=41.71 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=27.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 911 LRGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQAL 979 (1456)
Q Consensus 911 ~~~~le~l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q~~ 979 (1456)
+..++++++++..++.+++.+++.+.+++..+-.+.-.....++-++.+..++...++.......+++.
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443333333333333333333333333444444433333333333
No 262
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=80.57 E-value=3.9 Score=33.89 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=33.6
Q ss_pred CcEEEEeCCC-CCeEeEEEEEEc-CCeEEEEeCC-CcEEEEecccc
Q 000510 10 GSHVWVEDPV-LAWINGEVMWIN-GQEVHVNCTN-GKKVVTSVSKV 52 (1456)
Q Consensus 10 g~~vwv~~~~-~~w~~~~v~~~~-~~~~~~~~~~-g~~~~~~~~~~ 52 (1456)
|+.|-++.++ ..|-+|+|+++. ++.+.|...| |....++.+++
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~~~~~~V~f~DyG~~~~v~~~~l 46 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILSDGKVEVFFVDYGNTEVVPLSDL 46 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECCCCcEEEEEEcCCCcEEEeHHHc
Confidence 6778877664 889999999988 6678888766 88777776554
No 263
>PRK14527 adenylate kinase; Provisional
Probab=80.54 E-value=1.3 Score=48.62 Aligned_cols=28 Identities=29% Similarity=0.448 Sum_probs=24.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
.+..-|+|.|.+|||||+.++.+.+.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999887764
No 264
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=80.44 E-value=0.66 Score=59.34 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=26.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
++.+.|.|.|+||||||+..|.++.++..
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57899999999999999999999988654
No 265
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=80.42 E-value=1.2 Score=47.45 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=20.4
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~y 172 (1456)
+++++++.|.||+|||+....++..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4589999999999999976665543
No 266
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=80.41 E-value=2.2 Score=48.03 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCC--CeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 136 GDAAYRAMINEGK--SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 136 A~~Ay~~m~~~~~--~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
|-.|-..+..... ...++|.|+||+|||.....+.+++...
T Consensus 19 a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~ 61 (219)
T PF00308_consen 19 AYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ 61 (219)
T ss_dssp HHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3445555555432 3679999999999999988888887654
No 267
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=80.41 E-value=1.1 Score=53.73 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.+.+.+.|-||||||||+..|.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 467899999999999999999888655
No 268
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=80.40 E-value=2e+02 Score=37.60 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=4.4
Q ss_pred HHHHHHHHhH
Q 000510 764 ILQSFLRGEM 773 (1456)
Q Consensus 764 ~IQa~~Rg~l 773 (1456)
.+|..+-|+.
T Consensus 124 ~lQ~ti~~~q 133 (1265)
T KOG0976|consen 124 KLQDTIQGAQ 133 (1265)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 269
>PRK10646 ADP-binding protein; Provisional
Probab=80.37 E-value=2.6 Score=44.57 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.5
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000510 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.-.|++.|+-|||||+-+|.+.+.|
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998887
No 270
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=80.30 E-value=1.2 Score=54.99 Aligned_cols=62 Identities=29% Similarity=0.508 Sum_probs=40.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCC-----cccHHHHHhhcchHHH--hccCcc---ccCCCCCCccc
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVE-----GRTVEQQVLESNPVLE--AFGNAK---TVRNNNSSRFG 216 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~-----~~~ie~~il~snpiLE--aFGNAk---T~rN~NSSRfG 216 (1456)
..+=+|+|+||||+||-..|+.|=++ |.+.+.. -..|-.. ++| =||..| | ..+.+|-|
T Consensus 162 ~s~a~VLI~GESGtGKElvAr~IH~~----S~R~~~PFVavNcaAip~~------l~ESELFGhekGAFT--GA~~~r~G 229 (464)
T COG2204 162 PSDASVLITGESGTGKELVARAIHQA----SPRAKGPFIAVNCAAIPEN------LLESELFGHEKGAFT--GAITRRIG 229 (464)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHhh----CcccCCCceeeecccCCHH------HHHHHhhcccccCcC--CcccccCc
Confidence 56778999999999999877655443 4332210 0122222 444 499888 5 45688999
Q ss_pred cEEE
Q 000510 217 KFVE 220 (1456)
Q Consensus 217 k~~~ 220 (1456)
+|-.
T Consensus 230 ~fE~ 233 (464)
T COG2204 230 RFEQ 233 (464)
T ss_pred ceeE
Confidence 9864
No 271
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.29 E-value=1.1 Score=50.31 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.++..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988877543
No 272
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=80.24 E-value=1.1 Score=53.60 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.||||||||+..+.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 457899999999999999998887754
No 273
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=80.21 E-value=73 Score=34.55 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 000510 944 KDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQALAISP 983 (1456)
Q Consensus 944 ~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q~~~l~e 983 (1456)
..+++++...+.++.+++.+...+-.||..|++-..-+.+
T Consensus 104 ~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~LDe 143 (195)
T PF10226_consen 104 SVMRQEVAQYQQKLKELEDKQEELIRENLELKELCLYLDE 143 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 3567788888888888998888999999999888776655
No 274
>PRK12608 transcription termination factor Rho; Provisional
Probab=80.17 E-value=1.4 Score=52.92 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 134 AVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 134 aiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
.++.++...|.--++-|-++|.|++|+|||+.++.+.+.+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 577788888888899999999999999999999998887754
No 275
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.17 E-value=2.2 Score=52.58 Aligned_cols=56 Identities=14% Similarity=0.346 Sum_probs=39.9
Q ss_pred HHhhcCCcCCCCchhhhHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 118 EQYKGAAFGELSPHVFAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 118 ~~y~~~~~~~~~PHifaiA~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
++|+-..+.+.--|-.++ ...+.+... +-.+++|++|+.|.|||+.++.+-++|-+
T Consensus 8 ~k~RP~~~~eiiGq~~~~--~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 8 RKYRPKKFADITAQEHIT--RTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HhcCCCcHhhccChHHHH--HHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345555555554444333 246666665 56789999999999999999999998865
No 276
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=80.14 E-value=1.2 Score=51.36 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=19.8
Q ss_pred CeEEEecCCCCCCchhhHHHHHHH
Q 000510 149 SNSILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~y 172 (1456)
-..|+|+|+||+||||+|=-+++-
T Consensus 145 GvGVLItG~SG~GKSElALeLi~r 168 (308)
T COG1493 145 GVGVLITGPSGAGKSELALELIKR 168 (308)
T ss_pred eeEEEEECCCCCCHhHHHHHHHHh
Confidence 467999999999999997666554
No 277
>PRK14974 cell division protein FtsY; Provisional
Probab=79.97 E-value=2.5 Score=50.65 Aligned_cols=31 Identities=42% Similarity=0.553 Sum_probs=27.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~~~ 177 (1456)
++...|++.|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999987644
No 278
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=79.95 E-value=1.2 Score=49.84 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=22.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.++..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999888877654
No 279
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=79.94 E-value=1.4 Score=46.85 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.1
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhc
Q 000510 152 ILVSGESGAGKTETTKMLMRYLAYLG 177 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~~~ 177 (1456)
|.|.|.+|||||+.+..++..|...|
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999997653
No 280
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=79.93 E-value=1.2 Score=49.71 Aligned_cols=27 Identities=41% Similarity=0.572 Sum_probs=22.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.++..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999988887654
No 281
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=79.81 E-value=1.3 Score=51.18 Aligned_cols=75 Identities=28% Similarity=0.410 Sum_probs=50.1
Q ss_pred ccCccccccCceEEEeCCCcCCCCCCCHHHHHHhhc-----CCc--CCCCchhhhHHHHHHHHHHhcCCCeEEEecCCCC
Q 000510 87 ELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKG-----AAF--GELSPHVFAVGDAAYRAMINEGKSNSILVSGESG 159 (1456)
Q Consensus 87 ~~~~iYT~~G~iLiavNP~~~l~~ly~~~~~~~y~~-----~~~--~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESG 159 (1456)
.-|.=|++.|.-=+-||-|+... -|+. .++- ..+ -.+||-+..+++ ..+--|+|+|..|
T Consensus 70 E~Dfs~~~~~~~RfRvN~f~qr~-~~a~----vlR~Ip~~i~~~e~LglP~i~~~~~~---------~~~GLILVTGpTG 135 (353)
T COG2805 70 ELDFSYTLPGVARFRVNAFKQRG-GYAL----VLRLIPSKIPTLEELGLPPIVRELAE---------SPRGLILVTGPTG 135 (353)
T ss_pred ceeEEEecCCcceEEeehhhhcC-CcEE----EEeccCccCCCHHHcCCCHHHHHHHh---------CCCceEEEeCCCC
Confidence 45667898888888888887643 1110 0110 011 135666655443 4567899999999
Q ss_pred CCchhhHHHHHHHHHH
Q 000510 160 AGKTETTKMLMRYLAY 175 (1456)
Q Consensus 160 aGKTe~~k~~~~yla~ 175 (1456)
||||+|.-.++.|+-.
T Consensus 136 SGKSTTlAamId~iN~ 151 (353)
T COG2805 136 SGKSTTLAAMIDYINK 151 (353)
T ss_pred CcHHHHHHHHHHHHhc
Confidence 9999999999999853
No 282
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=79.70 E-value=3.8 Score=50.62 Aligned_cols=42 Identities=29% Similarity=0.445 Sum_probs=32.5
Q ss_pred hhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 132 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
++.+.-+|-..+..-++.|-+.|.|.||+|||+..+.++++.
T Consensus 158 ~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~ 199 (455)
T PRK07960 158 VLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYT 199 (455)
T ss_pred chhccceeeeecccccCCcEEEEECCCCCCccHHHHHHhCCC
Confidence 344445555566667889999999999999999988887654
No 283
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=79.63 E-value=0.97 Score=53.65 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=22.9
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
....|+|+|.+|||||+..+.++.++
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccC
Confidence 34699999999999999999888776
No 284
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=79.56 E-value=1.2 Score=53.44 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.+.+.+.|.||||||||+..|.|+..+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 467899999999999999999988654
No 285
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=79.53 E-value=1.6 Score=51.23 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHhc--------CCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 132 VFAVGDAAYRAMINE--------GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 132 ifaiA~~Ay~~m~~~--------~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
++....++...++.. .+...|++.|.+|+|||+++..+..|++..
T Consensus 169 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 169 AWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred HHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 455555555555531 245689999999999999999999999764
No 286
>PRK08356 hypothetical protein; Provisional
Probab=79.52 E-value=1.1 Score=49.50 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.2
Q ss_pred eEEEecCCCCCCchhhHHHHHH
Q 000510 150 NSILVSGESGAGKTETTKMLMR 171 (1456)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~ 171 (1456)
--|+|+|.+|||||+.++++-.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999854
No 287
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=79.51 E-value=1.3 Score=49.67 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.+.+.+.|.|+||||||+..|.++..+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457889999999999999999888764
No 288
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=79.50 E-value=1.3 Score=48.52 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=21.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~y 172 (1456)
...+.+.|.|++|||||+..|.++..
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988877643
No 289
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=79.49 E-value=2 Score=50.28 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
+.+=.|+|+|-||+|||+.+..+-.+|
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567799999999999999999999888
No 290
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=79.43 E-value=1.5 Score=56.58 Aligned_cols=55 Identities=24% Similarity=0.459 Sum_probs=38.3
Q ss_pred HHhhcCCcCCCC--chhhhHHHHHHHHHH-hcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 118 EQYKGAAFGELS--PHVFAVGDAAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 118 ~~y~~~~~~~~~--PHifaiA~~Ay~~m~-~~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
++|+-..+.++- +|+-.. ..++. ..+-.|++|++|.+|.|||++++++.+.|-+.
T Consensus 16 ~KyRP~~f~dliGq~~~v~~----L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRT----LTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHH----HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 456655554442 333332 33333 34568999999999999999999999998654
No 291
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=79.43 E-value=1.4 Score=50.96 Aligned_cols=31 Identities=19% Similarity=0.432 Sum_probs=26.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~~~ 177 (1456)
+..-.|++.|++|+|||+.++.+-+.|...+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3456799999999999999999999886654
No 292
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=79.41 E-value=1.3 Score=49.28 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.++..+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999888887654
No 293
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=79.40 E-value=1.1 Score=53.57 Aligned_cols=27 Identities=37% Similarity=0.561 Sum_probs=23.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.+.+.+.|-||||||||+..|.|+..+
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 356889999999999999998887665
No 294
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=79.29 E-value=2.9 Score=48.72 Aligned_cols=47 Identities=30% Similarity=0.374 Sum_probs=34.7
Q ss_pred hhhhHHHHHHHHHHh---------cCCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000510 131 HVFAVGDAAYRAMIN---------EGKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1456)
Q Consensus 131 HifaiA~~Ay~~m~~---------~~~~QsIiisGESGaGKTe~~k~~~~yla~~~ 177 (1456)
.+..+..++++.++. .++.+.|++.|.+|+|||+++-.+..+++..+
T Consensus 45 ~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 45 LLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred HHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 355566666665542 23468999999999999999999888887654
No 295
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=79.28 E-value=1.2 Score=47.16 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=20.8
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
..-.|.|+|.||+||++..|.+..-.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 34579999999999999877765543
No 296
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=79.25 E-value=1.3 Score=49.85 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=23.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 357889999999999999999988776
No 297
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=79.25 E-value=1.2 Score=45.77 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=21.1
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
..+.+.|.|++|||||+..+.+...+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 56889999999999999877665544
No 298
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.21 E-value=2 Score=54.83 Aligned_cols=54 Identities=24% Similarity=0.474 Sum_probs=38.5
Q ss_pred HHhhcCCcCCC--CchhhhHHHHHHHHHHh-cCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 118 EQYKGAAFGEL--SPHVFAVGDAAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 118 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~-~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
++|+-..+.++ .+|+-.. ...+.. .+-.+++|++|++|.|||+.++.+.+.|-+
T Consensus 8 ~k~rP~~f~divGq~~v~~~----L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRA----LTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHH----HHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45665555554 3555543 334343 456789999999999999999999999854
No 299
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=79.14 E-value=19 Score=42.79 Aligned_cols=68 Identities=22% Similarity=0.308 Sum_probs=32.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Q 000510 913 GLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQR-------LAEKVSNLESENQVLRQQALA 980 (1456)
Q Consensus 913 ~~le~l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~-------lee~l~~le~e~~~L~~q~~~ 980 (1456)
.+++.++++..++.+++.+++++.+++.+++.+++.+...++++-.. +.-.+...+++.+.+..+...
T Consensus 50 ~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~ 124 (314)
T PF04111_consen 50 EELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEY 124 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555555544444443333 333334444444545444433
No 300
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=79.14 E-value=1.2 Score=55.69 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=23.8
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
+-.+.=|.||||||||+.+|.|+..+.-
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4567778999999999999999988754
No 301
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=79.12 E-value=27 Score=31.00 Aligned_cols=38 Identities=34% Similarity=0.514 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 930 TVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNL 967 (1456)
Q Consensus 930 ~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~l 967 (1456)
...+..+-.+..++.+.+.+...|..+++.+++.+.++
T Consensus 21 ~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 21 TKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444555555555555555555555444443
No 302
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.08 E-value=1.3 Score=49.28 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.++..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999888877654
No 303
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=79.07 E-value=1.3 Score=50.33 Aligned_cols=25 Identities=40% Similarity=0.656 Sum_probs=22.6
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHH
Q 000510 151 SILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
.|+|-|.||||||+..+.++.++..
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcc
Confidence 5899999999999999999988754
No 304
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=79.07 E-value=2.4e+02 Score=37.77 Aligned_cols=83 Identities=23% Similarity=0.328 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 882 RETGALQEAKNKLEKRVEELTWRLQIEKR----LRGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSV 957 (1456)
Q Consensus 882 ~~~~~l~~~~~kLe~kv~eL~~rl~~ek~----~~~~le~l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el 957 (1456)
+....+......||.++.++..++..... +...|.+..+.+.++.+....++.+...+..++...|.++..|+-++
T Consensus 78 ~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~ 157 (769)
T PF05911_consen 78 KKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYEL 157 (769)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666677888888888877754332 22334444445556666666666666666666666666666666555
Q ss_pred HHHHHHH
Q 000510 958 QRLAEKV 964 (1456)
Q Consensus 958 ~~lee~l 964 (1456)
..+.+.+
T Consensus 158 ~~~~kel 164 (769)
T PF05911_consen 158 HVLSKEL 164 (769)
T ss_pred HHHHHHH
Confidence 5555433
No 305
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=79.06 E-value=3.3 Score=51.31 Aligned_cols=42 Identities=19% Similarity=0.389 Sum_probs=33.5
Q ss_pred hhhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHH
Q 000510 131 HVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 131 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~y 172 (1456)
.++.+.-.|...|..-++.|.+.|.|.||+|||+..+.+..+
T Consensus 150 ~~l~TGi~aID~l~~I~~GqrigI~G~sG~GKSTLl~~I~g~ 191 (451)
T PRK05688 150 EPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRF 191 (451)
T ss_pred CCcccceeeecceEEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345555566677777789999999999999999998877654
No 306
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.96 E-value=2.4 Score=53.97 Aligned_cols=55 Identities=22% Similarity=0.443 Sum_probs=39.4
Q ss_pred HHHhhcCCcCCCC--chhhhHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 117 MEQYKGAAFGELS--PHVFAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 117 ~~~y~~~~~~~~~--PHifaiA~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
.++|+-..+.+.- +|+... ...+... +-..++|++|+.|.|||+.++.+.++|-+
T Consensus 7 a~KyRP~~f~diiGq~~~v~~----L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNS----LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3566666655553 555543 3333333 56788999999999999999999999865
No 307
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=78.95 E-value=1.7 Score=51.67 Aligned_cols=31 Identities=39% Similarity=0.398 Sum_probs=27.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 177 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~~~ 177 (1456)
++.+.|.+.|.+|||||+++..+..+++..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g 142 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG 142 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999998654
No 308
>PRK14528 adenylate kinase; Provisional
Probab=78.92 E-value=1.5 Score=48.07 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.4
Q ss_pred eEEEecCCCCCCchhhHHHHHHHH
Q 000510 150 NSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
+.|+|.|.+|||||+.++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999988766
No 309
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=78.92 E-value=94 Score=39.48 Aligned_cols=19 Identities=11% Similarity=-0.106 Sum_probs=10.3
Q ss_pred CCcccchhhhHHHHHHHHH
Q 000510 1102 DNNDRLSYWLSNASTLLLL 1120 (1456)
Q Consensus 1102 ~d~~~lafWLSN~~~LL~~ 1120 (1456)
.+++.--.||.-..+=|.+
T Consensus 313 selE~~n~~L~~~I~dL~~ 331 (546)
T KOG0977|consen 313 SELESRNSALEKRIEDLEY 331 (546)
T ss_pred ccccccChhHHHHHHHHHh
Confidence 4555555566555555544
No 310
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=78.92 E-value=1.5 Score=47.54 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=22.1
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhc
Q 000510 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla~~~ 177 (1456)
+++|.|++|+|||..+-.++...+.-+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g 27 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG 27 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 489999999999998887777766443
No 311
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=78.85 E-value=1.3 Score=49.41 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=22.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.++..+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 357889999999999999988887654
No 312
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=78.83 E-value=1.3 Score=48.93 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.0
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
..+.+.|.|++|||||+..|.++..+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 56889999999999999888887543
No 313
>PRK04195 replication factor C large subunit; Provisional
Probab=78.70 E-value=1.8 Score=54.79 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=23.2
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
....++|+|++|.|||+.++.+.+.+
T Consensus 38 ~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 38 PKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 37899999999999999999888765
No 314
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=78.67 E-value=1.7 Score=40.87 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=23.0
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHh
Q 000510 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
|+++|-.|+|||+.+..+.+.|+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~ 26 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR 26 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7889999999999999999999874
No 315
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=78.63 E-value=1.2 Score=47.87 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=21.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~ 171 (1456)
..+..|+|.||+|+||+..|+.|-+
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4568999999999999999888865
No 316
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=78.59 E-value=1.3 Score=52.98 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=23.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.+.+.+-|-||||||||+.+|.|+..+
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456888999999999999999998865
No 317
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=78.56 E-value=2.2 Score=46.37 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
+..-.|+++|.||||||+.++.+...+..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44568999999999999999999999853
No 318
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=78.54 E-value=2.5 Score=51.12 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=32.3
Q ss_pred HHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 136 GDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 136 A~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
|...+..+... +-+++++|+|+.|.|||+.++.+.++|-+
T Consensus 31 a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 31 AEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 34555555554 45899999999999999999999999865
No 319
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.50 E-value=1.5 Score=47.60 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|++|||||+..|.++..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999888877543
No 320
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=78.43 E-value=1.7 Score=42.42 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 882 RETGALQEAKNKLEKRVEELTWRL 905 (1456)
Q Consensus 882 ~~~~~l~~~~~kLe~kv~eL~~rl 905 (1456)
............++.++++|+..|
T Consensus 8 ~~r~~ae~~~~~ie~ElEeLTasL 31 (100)
T PF06428_consen 8 ERREEAEQEKEQIESELEELTASL 31 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555566666666666555
No 321
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=78.41 E-value=1.8 Score=46.16 Aligned_cols=28 Identities=36% Similarity=0.387 Sum_probs=24.6
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHHhc
Q 000510 150 NSILVSGESGAGKTETTKMLMRYLAYLG 177 (1456)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yla~~~ 177 (1456)
..|.|.|.||||||+.++.++..|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3688999999999999999999987654
No 322
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.41 E-value=1.4 Score=50.10 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|++|||||+..|.++-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999888887654
No 323
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.39 E-value=2 Score=54.41 Aligned_cols=56 Identities=27% Similarity=0.318 Sum_probs=37.6
Q ss_pred HHhhcCCcCCC--CchhhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 118 EQYKGAAFGEL--SPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 118 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
++|+-..+.++ ..|+.+.-..+. ...+-.++++++|++|+|||+.++.+.+.+-+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i---~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAAL---RQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHH---HcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34554444443 345544333332 234567899999999999999999999998653
No 324
>PRK08116 hypothetical protein; Validated
Probab=78.38 E-value=3.2 Score=48.29 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=33.4
Q ss_pred chhhhHHHHHHHHHHh-cCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 130 PHVFAVGDAAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 130 PHifaiA~~Ay~~m~~-~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
.+.|+.|..--..... ...+..+++.|++|+|||..+..|.++|..-
T Consensus 94 ~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 94 EKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred HHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3455555544443322 2345679999999999999999999999764
No 325
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=78.35 E-value=2.2 Score=46.71 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=22.7
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHh
Q 000510 152 ILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
||++|-.|||||+-+|.+-+-|-.-
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHh
Confidence 8999999999999999999988653
No 326
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=78.33 E-value=7.5 Score=34.17 Aligned_cols=51 Identities=20% Similarity=0.157 Sum_probs=38.2
Q ss_pred cccccCcEEEEeC-CCCCeEeEEEEEEcC-CeEEEEeCC---CcEEEEecccccCC
Q 000510 5 DNIIVGSHVWVED-PVLAWINGEVMWING-QEVHVNCTN---GKKVVTSVSKVFPE 55 (1456)
Q Consensus 5 ~~~~~g~~vwv~~-~~~~w~~~~v~~~~~-~~~~~~~~~---g~~~~~~~~~~~~~ 55 (1456)
+.+.+|+.|-+.. .+.+|-.|+|+++.+ +...|...+ |...+++.+++-|.
T Consensus 1 ~~~~~G~~Ve~~~~~~~~W~~a~V~~~~~~~~~~V~~~~~~~~~~e~v~~~~LRp~ 56 (61)
T smart00743 1 SDFKKGDRVEVFSKEEDSWWEAVVTKVLGDGKYLVRYLTESEPLKETVDWSDLRPH 56 (61)
T ss_pred CCcCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCcccEEEEeHHHcccC
Confidence 3578999998875 366899999999887 678888755 44566776666554
No 327
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=78.32 E-value=2.2 Score=50.59 Aligned_cols=48 Identities=29% Similarity=0.301 Sum_probs=33.7
Q ss_pred CCCCchhhhHHHHH----HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 126 GELSPHVFAVGDAA----YRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 126 ~~~~PHifaiA~~A----y~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.+++|---+.+... +.....-.....|++.|-+|||||+.++.+-..|
T Consensus 106 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 106 EQASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 35666433334333 3333445678899999999999999999987665
No 328
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=78.19 E-value=1.6 Score=47.56 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=22.4
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
..-|||+|.||+|||+.++.+++-+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 34699999999999999999988653
No 329
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=78.17 E-value=0.93 Score=59.40 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=27.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhcC
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLGG 178 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~~~~ 178 (1456)
...|.|-|.|+||||||+.+|+++.++.--.|
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G 528 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG 528 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 35789999999999999999999998765444
No 330
>PRK06835 DNA replication protein DnaC; Validated
Probab=78.11 E-value=3.5 Score=49.33 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=25.5
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
....+++.|.+|+|||..+..|.+.+..-
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 44889999999999999999999988753
No 331
>PRK13768 GTPase; Provisional
Probab=78.09 E-value=1.6 Score=50.22 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=24.4
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhc
Q 000510 151 SILVSGESGAGKTETTKMLMRYLAYLG 177 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla~~~ 177 (1456)
.|+|+|.+|+|||+.+..+..+|+..|
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
Confidence 589999999999999999999998654
No 332
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=78.03 E-value=1.4 Score=47.66 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.9
Q ss_pred EEecCCCCCCchhhHHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla 174 (1456)
|+|.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999988764
No 333
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=77.97 E-value=1.6 Score=51.28 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=25.1
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHhcC
Q 000510 151 SILVSGESGAGKTETTKMLMRYLAYLGG 178 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla~~~~ 178 (1456)
.|++.|++|+|||..++.+-+++...+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 5999999999999999999999987654
No 334
>PRK00698 tmk thymidylate kinase; Validated
Probab=77.96 E-value=2 Score=47.39 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.5
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 149 SNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
+-.|+|.|-+|||||+.++.+-++|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999988643
No 335
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=77.86 E-value=1.4 Score=49.12 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=22.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.+...+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 356889999999999999988876543
No 336
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=77.78 E-value=43 Score=40.77 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 915 LQSQTQTADEAKQAFTVSEAKNGELTK 941 (1456)
Q Consensus 915 le~l~~~~~ele~~l~~~e~~~~el~~ 941 (1456)
+.+++.++++..+++...++.+..+.+
T Consensus 384 ~~q~q~k~~k~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 384 LQQLQTKLKKCQKELKEEREENKKLIK 410 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444554444444433333
No 337
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=77.75 E-value=2.7 Score=45.86 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=29.4
Q ss_pred HHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 140 YRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 140 y~~m~~~-~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
.+++... +-++++++.|++|.|||+.++.+.+.+..
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3444444 46799999999999999999999998864
No 338
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.68 E-value=2.4 Score=54.47 Aligned_cols=55 Identities=25% Similarity=0.432 Sum_probs=40.4
Q ss_pred HHHhhcCCcCCC--CchhhhHHHHHHHHHHhcC-CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 117 MEQYKGAAFGEL--SPHVFAVGDAAYRAMINEG-KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 117 ~~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~-~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
.++|+-..+.++ .+|+-++ ++.+...+ -.+++|++|+.|.|||++++.+.++|-+
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~----L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAI----LSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHH----HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 456766665554 4666443 34444444 4899999999999999999999999865
No 339
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=77.59 E-value=22 Score=31.90 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000510 928 AFTVSEAKNGELTKKLKDAEKR 949 (1456)
Q Consensus 928 ~l~~~e~~~~el~~~~~ele~~ 949 (1456)
....++.++..+..+...+..+
T Consensus 15 ~~~~L~~EN~~Lr~q~~~~~~E 36 (65)
T TIGR02449 15 YLERLKSENRLLRAQEKTWREE 36 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 340
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=77.56 E-value=1.5 Score=48.75 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.+...+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 357889999999999999888776553
No 341
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.56 E-value=1.5 Score=49.50 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=22.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.+...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999888877654
No 342
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=77.56 E-value=2.7 Score=48.68 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=30.1
Q ss_pred chhhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 130 PHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 130 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
|++=.+-+.+.+.+. .+..|++.|++|+|||+.++.+-+.+
T Consensus 5 ~~~~~l~~~~l~~l~---~g~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 5 DAVKRVTSRALRYLK---SGYPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHHHHHHh---cCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 455555566655554 35789999999999999998876643
No 343
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=77.48 E-value=1.5 Score=51.15 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.1
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yl 173 (1456)
|.|.|.||||||+.++.+...|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999998887665
No 344
>PLN02796 D-glycerate 3-kinase
Probab=77.44 E-value=1.5 Score=52.30 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=20.6
Q ss_pred EEEecCCCCCCchhhHHHHHHHHH
Q 000510 151 SILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla 174 (1456)
-|-|+|.||||||+.++.+...|.
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 378999999999999998877763
No 345
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=77.19 E-value=2.6 Score=55.54 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 138 AAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 138 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+...++..++++.|++|.|||+.++.+-+++
T Consensus 41 ~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457777788888899999999999999999998765
No 346
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=77.19 E-value=1.1 Score=57.94 Aligned_cols=29 Identities=24% Similarity=0.544 Sum_probs=25.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
.+.|.+.|.|+||||||+..|.++..+.-
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 46899999999999999999999988754
No 347
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=77.18 E-value=3.9 Score=50.34 Aligned_cols=37 Identities=24% Similarity=0.411 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 137 DAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 137 ~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
-.|...|..-++.|.+.|.|.||+|||+..+.++.+.
T Consensus 125 i~~id~l~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~ 161 (411)
T TIGR03496 125 VRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMARYT 161 (411)
T ss_pred EEeecceEEEecCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455555566789999999999999999877776543
No 348
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=77.14 E-value=38 Score=33.22 Aligned_cols=63 Identities=24% Similarity=0.313 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 917 SQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQAL 979 (1456)
Q Consensus 917 ~l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q~~ 979 (1456)
+++.....|.+..-+.+....++..+++..+..+..++.+++.|.=.+..|.+....|..++.
T Consensus 9 KLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 9 KLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555566666777777777777777777777777777777777776666654
No 349
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=77.04 E-value=0.99 Score=46.72 Aligned_cols=26 Identities=38% Similarity=0.731 Sum_probs=20.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~y 172 (1456)
..+..|+|.||+|+||+..++.+-.+
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 56788999999999999877655443
No 350
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=77.00 E-value=1.6 Score=49.45 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=22.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..+.|.-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 357889999999999999888876543
No 351
>PRK14531 adenylate kinase; Provisional
Probab=76.99 E-value=1.8 Score=47.13 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.3
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHH
Q 000510 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
|-|+|.|-+|||||+.++.+-+.+-
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999988763
No 352
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=76.97 E-value=1.7 Score=46.54 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=23.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|++|||||+..+.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467889999999999999988887654
No 353
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=76.96 E-value=1.6 Score=50.03 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=22.3
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~ 175 (1456)
|+++|-+|||||+.++.+-++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999864
No 354
>PRK05922 type III secretion system ATPase; Validated
Probab=76.93 E-value=2.5 Score=52.04 Aligned_cols=42 Identities=29% Similarity=0.389 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 132 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
++.+.-+|...+..-++.|.|.|.|.+|+|||+..+.+.++.
T Consensus 140 ~l~TGIr~ID~ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~ 181 (434)
T PRK05922 140 IFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGS 181 (434)
T ss_pred ecCCCceeecceEEEcCCcEEEEECCCCCChHHHHHHHhccC
Confidence 344444555556667899999999999999999988888664
No 355
>PRK10436 hypothetical protein; Provisional
Probab=76.92 E-value=1.5 Score=54.65 Aligned_cols=34 Identities=32% Similarity=0.496 Sum_probs=26.0
Q ss_pred HHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 140 YRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 140 y~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
++.+.. ...=-|+|+|..|||||++...+++++.
T Consensus 210 l~~~~~-~~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 210 FRQALQ-QPQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred HHHHHH-hcCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 444432 2345799999999999999988888874
No 356
>PF13479 AAA_24: AAA domain
Probab=76.88 E-value=1.4 Score=49.29 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=19.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKML 169 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~ 169 (1456)
+++..|+|.|+||+|||..++.+
T Consensus 1 ~~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 1 KKPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CCceEEEEECCCCCCHHHHHHhC
Confidence 35789999999999999866554
No 357
>PRK06921 hypothetical protein; Provisional
Probab=76.81 E-value=2.3 Score=49.36 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=24.5
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
....+++.|++|+|||..+..|.+.+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 5689999999999999999888887754
No 358
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=76.76 E-value=1.7 Score=48.73 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=22.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..+.+...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999888775443
No 359
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.75 E-value=1.7 Score=49.46 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=22.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 356789999999999999988887654
No 360
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=76.74 E-value=1.7 Score=49.54 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~y 172 (1456)
...+.+.|.|+||||||+..|.+.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35788999999999999988887654
No 361
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=76.65 E-value=47 Score=36.57 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000510 956 SVQRLAEKVSNLESENQVLRQQA 978 (1456)
Q Consensus 956 el~~lee~l~~le~e~~~L~~q~ 978 (1456)
+.+.....+..+++....+.+++
T Consensus 153 ~ke~~~~ei~~lks~~~~l~~~~ 175 (190)
T PF05266_consen 153 KKEAKDKEISRLKSEAEALKEEI 175 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444443
No 362
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=76.65 E-value=1e+02 Score=41.03 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=14.4
Q ss_pred CCCCCcEEEeccceeeecccchhh
Q 000510 540 LSRTDFTILHYAGEVTYQANHFLD 563 (1456)
Q Consensus 540 ~~~~~F~I~Hyag~V~Y~~~~fle 563 (1456)
..+..|.+.|-||-=.=.. .|+.
T Consensus 376 ~~~~ryy~~H~~GvH~V~L-~wl~ 398 (717)
T PF10168_consen 376 LNPDRYYCYHNAGVHSVTL-PWLS 398 (717)
T ss_pred CCCceEEEEecCccEEEEe-ccHH
Confidence 3457899999998622222 3665
No 363
>PRK00023 cmk cytidylate kinase; Provisional
Probab=76.64 E-value=1.7 Score=49.12 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=23.1
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
+-.|.|+|.+|||||+.++.+.+.|-
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998873
No 364
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=76.57 E-value=1.7 Score=49.48 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.|...+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999888876544
No 365
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=76.49 E-value=1.7 Score=51.06 Aligned_cols=24 Identities=42% Similarity=0.684 Sum_probs=21.0
Q ss_pred CeEEEecCCCCCCchhhHHHHHHH
Q 000510 149 SNSILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~y 172 (1456)
.-.|+|.|+||+||||+|=-+++.
T Consensus 146 G~GvLi~G~SG~GKSelALeLi~r 169 (308)
T PRK05428 146 GIGVLITGESGIGKSETALELIKR 169 (308)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 478999999999999998877765
No 366
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.43 E-value=1.7 Score=48.52 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=21.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.+ +.+.|.|+||||||+..|.++..+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 45 889999999999999888876544
No 367
>PRK03839 putative kinase; Provisional
Probab=76.36 E-value=1.8 Score=46.97 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.6
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000510 151 SILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yl 173 (1456)
-|+|.|-+|||||+.++.+-+-+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999987775
No 368
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=76.34 E-value=54 Score=41.49 Aligned_cols=42 Identities=21% Similarity=0.446 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000510 939 LTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQALA 980 (1456)
Q Consensus 939 l~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q~~~ 980 (1456)
....+.+++.++..++...+.+++++..+..||..|+.++..
T Consensus 146 ~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~ 187 (546)
T KOG0977|consen 146 YLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELAR 187 (546)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 333344455555555555555555555555555555544433
No 369
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=76.32 E-value=8.9 Score=47.24 Aligned_cols=45 Identities=16% Similarity=0.308 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 935 KNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQAL 979 (1456)
Q Consensus 935 ~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q~~ 979 (1456)
..+++++++..++.+.+.+..+.+.+++++.+++.|++.|+.++.
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444445555556666666666666666653
No 370
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=76.23 E-value=1.8 Score=48.41 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=22.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~y 172 (1456)
...+.+.|.|+||||||+..|.+...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45788999999999999988887643
No 371
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=76.13 E-value=1.8 Score=48.00 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=22.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.+...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 357889999999999999888876543
No 372
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=76.11 E-value=1.8 Score=48.06 Aligned_cols=26 Identities=19% Similarity=0.530 Sum_probs=22.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~y 172 (1456)
.+.+.+.|.|+||||||+..+.++..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46788999999999999988877654
No 373
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=76.10 E-value=22 Score=32.92 Aligned_cols=9 Identities=56% Similarity=0.748 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 000510 967 LESENQVLR 975 (1456)
Q Consensus 967 le~e~~~L~ 975 (1456)
++.+|+.|+
T Consensus 51 L~~en~qLk 59 (79)
T PRK15422 51 LERENNHLK 59 (79)
T ss_pred HHHHHHHHH
Confidence 333333333
No 374
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=76.03 E-value=1.7 Score=47.46 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.9
Q ss_pred EEEecCCCCCCchhhHHHHHHHH
Q 000510 151 SILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yl 173 (1456)
-|||+|.||||||+.++.+++..
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998874
No 375
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.01 E-value=19 Score=41.33 Aligned_cols=66 Identities=17% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000510 915 LQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQALA 980 (1456)
Q Consensus 915 le~l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q~~~ 980 (1456)
+..-+.++.++.+...+++.+++.+..++.+...++..+++++++.+..+.+++.+++.+++.+..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 376
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=75.95 E-value=1.8 Score=49.48 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.+...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 457889999999999999888877543
No 377
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=75.90 E-value=1.8 Score=48.94 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=23.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.++..+
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999998887654
No 378
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=75.87 E-value=1.9 Score=55.49 Aligned_cols=44 Identities=32% Similarity=0.415 Sum_probs=32.6
Q ss_pred chhhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 130 PHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 130 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
|-|.+|-.++|.. +.++.-.|+++|-||||||+.++.+...|-.
T Consensus 375 peV~~iL~~~~~~--r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 375 PEVVAELRRTYPP--RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHHhcc--ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 3444544444432 3455669999999999999999999998865
No 379
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=75.85 E-value=1.9 Score=47.86 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=21.1
Q ss_pred EEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 151 SILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
.++|.|.||||||...+.++.-++..
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~ 65 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALT 65 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHH
Confidence 68999999999999999888888763
No 380
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.81 E-value=1.9 Score=48.39 Aligned_cols=25 Identities=40% Similarity=0.525 Sum_probs=21.2
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~y 172 (1456)
..+.+.|.|+||||||+..|.|.-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678899999999999998887643
No 381
>PRK10908 cell division protein FtsE; Provisional
Probab=75.78 E-value=1.9 Score=48.48 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.|...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999888876543
No 382
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=75.73 E-value=1.8 Score=47.90 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.+...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 357889999999999999988876543
No 383
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=75.69 E-value=1.8 Score=49.14 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=22.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.++..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 356889999999999999988886543
No 384
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.67 E-value=1.9 Score=47.92 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=21.3
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~y 172 (1456)
..+.+.|.|+||||||+..|.+...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5677889999999999998888754
No 385
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.65 E-value=1.9 Score=46.42 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=21.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.+...+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999888775443
No 386
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.63 E-value=4.1 Score=49.56 Aligned_cols=57 Identities=19% Similarity=0.381 Sum_probs=42.7
Q ss_pred HHHhhcCCcCCCCchhhhHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 117 MEQYKGAAFGELSPHVFAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 117 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
.++|+-..+.++--|-.++ +..+..... .-++.++++|+.|.|||+.++.+.+.+..
T Consensus 8 ~~k~rP~~~~~iig~~~~~--~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSHIT--NTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HHHHCCCcHHhcCCcHHHH--HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4677777777776665543 445555544 45789999999999999999999888865
No 387
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=75.62 E-value=79 Score=41.17 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000510 952 ELQDSVQRLAEKVSNLE 968 (1456)
Q Consensus 952 ~L~~el~~lee~l~~le 968 (1456)
.|++++.++++....+.
T Consensus 164 eLK~QL~Elq~~Fv~lt 180 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLT 180 (617)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444333333
No 388
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=75.56 E-value=1.9 Score=48.76 Aligned_cols=27 Identities=41% Similarity=0.485 Sum_probs=23.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.+.+.+.|.|+||||||+..|.++..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999988887655
No 389
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=75.54 E-value=4.6 Score=49.42 Aligned_cols=61 Identities=20% Similarity=0.109 Sum_probs=39.8
Q ss_pred CHHHHHHhhcCCcCCCCchhhhHHHHHHHHHHhc---------CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 113 DTHMMEQYKGAAFGELSPHVFAVGDAAYRAMINE---------GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 113 ~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~---------~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
++..+..+-+...-..+.-+-+++..+|.+..+. .....|++.|.+|+|||+.++.+-+.+
T Consensus 5 ~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 5 TPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred CHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3444445544444444555566666665543322 125899999999999999999887765
No 390
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=75.54 E-value=1.4e+02 Score=36.35 Aligned_cols=9 Identities=33% Similarity=0.822 Sum_probs=5.3
Q ss_pred HHHHHHHhH
Q 000510 840 AQWRCHQAY 848 (1456)
Q Consensus 840 ~~~R~~~~R 848 (1456)
+-||.|..+
T Consensus 216 kDWR~hleq 224 (359)
T PF10498_consen 216 KDWRSHLEQ 224 (359)
T ss_pred chHHHHHHH
Confidence 467666554
No 391
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=75.53 E-value=1.7e+02 Score=34.36 Aligned_cols=16 Identities=19% Similarity=0.061 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhH
Q 000510 833 KAAIIAQAQWRCHQAY 848 (1456)
Q Consensus 833 ~aai~IQ~~~R~~~~R 848 (1456)
.|...+|...|.....
T Consensus 68 aa~~llq~kirk~~e~ 83 (401)
T PF06785_consen 68 AAGQLLQTKIRKITEK 83 (401)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4446678877766543
No 392
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=75.49 E-value=1.9 Score=48.71 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=19.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLM 170 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~ 170 (1456)
.+.+.+.|.|+||||||+.++-++
T Consensus 19 ~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
Confidence 467899999999999999974333
No 393
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=75.44 E-value=1.9 Score=49.08 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=22.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~y 172 (1456)
...+.+.|.|+||||||+..|.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999988887754
No 394
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=75.42 E-value=1.8 Score=51.08 Aligned_cols=24 Identities=25% Similarity=0.327 Sum_probs=21.8
Q ss_pred eEEEecCCCCCCchhhHHHHHHHH
Q 000510 150 NSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
+-||++|.+|||||+.++.+.+.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 579999999999999999988876
No 395
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=75.39 E-value=1.9 Score=48.54 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=22.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|++|||||+..|.+...+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 357889999999999999888887654
No 396
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=75.38 E-value=2 Score=47.88 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999888776543
No 397
>PRK01156 chromosome segregation protein; Provisional
Probab=75.37 E-value=54 Score=45.04 Aligned_cols=20 Identities=25% Similarity=0.539 Sum_probs=16.7
Q ss_pred EEEecCCCCCCchhhHHHHH
Q 000510 151 SILVSGESGAGKTETTKMLM 170 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~ 170 (1456)
..+|+|++|||||...-.|.
T Consensus 25 i~~I~G~NGsGKSsileAI~ 44 (895)
T PRK01156 25 INIITGKNGAGKSSIVDAIR 44 (895)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57899999999998766555
No 398
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=75.31 E-value=1.9 Score=49.64 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=22.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988888654
No 399
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=75.27 E-value=2.6 Score=47.79 Aligned_cols=41 Identities=32% Similarity=0.382 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHh-cCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 134 AVGDAAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 134 aiA~~Ay~~m~~-~~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
-+.+++|..|.. -..+.+-.++|++|+||||++|.+-+.|.
T Consensus 16 plt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG 57 (231)
T PF12774_consen 16 PLTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALG 57 (231)
T ss_dssp HHHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhC
Confidence 346778877654 35678899999999999999998877654
No 400
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=75.26 E-value=3.3 Score=53.28 Aligned_cols=56 Identities=23% Similarity=0.422 Sum_probs=40.3
Q ss_pred HHhhcCCcCCC--CchhhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 118 EQYKGAAFGEL--SPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 118 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
+.|+-..+.++ .+|+-..=..++. ..+-.+++|++|+.|.|||+++|.+.+.+.+.
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~---~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIK---QGKISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 35555555544 5676654444433 35568999999999999999999999988654
No 401
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=75.26 E-value=2 Score=47.25 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=21.9
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
..+.+.|.|++|||||+..+.++.-+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999888876643
No 402
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=75.20 E-value=3.4 Score=44.89 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=24.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
...+.+++.|.+|.|||..+..+.+.+..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~ 73 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR 73 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc
Confidence 45789999999999999999999988876
No 403
>PRK02496 adk adenylate kinase; Provisional
Probab=75.20 E-value=2 Score=46.70 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yl 173 (1456)
|+|.|.+|||||+.++.+-+.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998766
No 404
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=75.18 E-value=3.3 Score=51.40 Aligned_cols=60 Identities=30% Similarity=0.414 Sum_probs=46.7
Q ss_pred HHHHHHhhcCCcCCCCchhhhHHHH--HHH--HHHhc-CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 114 THMMEQYKGAAFGELSPHVFAVGDA--AYR--AMINE-GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 114 ~~~~~~y~~~~~~~~~PHifaiA~~--Ay~--~m~~~-~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
+..++.|+-....++.-|-=.|++- +++ .|... -+++-.+|+|.||+|||++.|.+-.=|
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 4567889988889999998888764 555 33333 367889999999999999988876655
No 405
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=75.18 E-value=1.2e+02 Score=36.85 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=8.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 000510 913 GLLQSQTQTADEAKQAFTVSEAK 935 (1456)
Q Consensus 913 ~~le~l~~~~~ele~~l~~~e~~ 935 (1456)
..++.+-+++.....++.+.+.+
T Consensus 266 ~qle~l~~eYr~~~~~ls~~~~~ 288 (359)
T PF10498_consen 266 NQLEPLIQEYRSAQDELSEVQEK 288 (359)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 406
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=75.17 E-value=2 Score=48.16 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=22.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~y 172 (1456)
...+.+.|.|+||||||+..+.++-.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46788999999999999988887644
No 407
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=75.15 E-value=4.2 Score=50.02 Aligned_cols=25 Identities=40% Similarity=0.616 Sum_probs=21.2
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHH
Q 000510 149 SNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.-+|++.|++|+|||+.+|.+-+.+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhc
Confidence 3689999999999999998886544
No 408
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.14 E-value=3.5 Score=53.36 Aligned_cols=55 Identities=25% Similarity=0.439 Sum_probs=38.4
Q ss_pred HHhhcCCcCCCC--chhhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 118 EQYKGAAFGELS--PHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 118 ~~y~~~~~~~~~--PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
++|+-..+.++- .|+...-..++ ...+..+++|++|++|.|||+.++.+.++|-+
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i---~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAI---AEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHH---HhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 456655555553 45444333332 23456899999999999999999999999864
No 409
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=75.09 E-value=3.9 Score=51.20 Aligned_cols=57 Identities=21% Similarity=0.357 Sum_probs=39.9
Q ss_pred HHhhcCCcCCCCchhhhHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 118 EQYKGAAFGELSPHVFAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 118 ~~y~~~~~~~~~PHifaiA~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
++|+-..+.+.--|--.+. ..+.+... +-.+++|++|++|.|||+.++.+.++|...
T Consensus 9 ~kyRP~~~~diiGq~~~v~--~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVA--VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred HHhCCCCHHHhcCcHHHHH--HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 4566555555544443333 34444444 457999999999999999999999999653
No 410
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=75.04 E-value=2 Score=46.76 Aligned_cols=28 Identities=32% Similarity=0.461 Sum_probs=23.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
.....+.|.|+||||||+..|.+...+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4567888999999999999888876653
No 411
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=74.97 E-value=2.1 Score=46.49 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLM 170 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~ 170 (1456)
....-+.|.|+||||||+..+.++
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 345678899999999999998773
No 412
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=74.92 E-value=78 Score=32.44 Aligned_cols=30 Identities=20% Similarity=0.454 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 939 LTKKLKDAEKRVDELQDSVQRLAEKVSNLE 968 (1456)
Q Consensus 939 l~~~~~ele~~i~~L~~el~~lee~l~~le 968 (1456)
..+++.++...+.+...+++.....+..|+
T Consensus 87 i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 87 IKDEVTEVREDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444443333333333
No 413
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.87 E-value=59 Score=29.26 Aligned_cols=6 Identities=67% Similarity=0.916 Sum_probs=2.3
Q ss_pred HHHHHH
Q 000510 893 KLEKRV 898 (1456)
Q Consensus 893 kLe~kv 898 (1456)
+||.|+
T Consensus 8 kLE~Ki 13 (79)
T COG3074 8 KLEAKV 13 (79)
T ss_pred HHHHHH
Confidence 333333
No 414
>PRK05439 pantothenate kinase; Provisional
Probab=74.86 E-value=4.1 Score=48.24 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=25.6
Q ss_pred cCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 146 EGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 146 ~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
.+..--|.|+|-+|||||+.++.+...|...
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~ 113 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRW 113 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4556678899999999999999988877543
No 415
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=74.82 E-value=2 Score=49.90 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.+...+
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999888876544
No 416
>PF13173 AAA_14: AAA domain
Probab=74.75 E-value=2.4 Score=43.24 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=23.6
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
++.++|.|..|+|||+.++.+++++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998876
No 417
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=74.73 E-value=2 Score=48.58 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.++..+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999888887543
No 418
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=74.72 E-value=2.1 Score=48.03 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=21.8
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~y 172 (1456)
...+.+.|.|+||||||+..|.++..
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35788999999999999988887654
No 419
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=74.69 E-value=2.1 Score=50.11 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=21.7
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~y 172 (1456)
....|+|.|+||+|||+++--+++.
T Consensus 145 ~g~gvli~G~sg~GKS~lal~Li~r 169 (304)
T TIGR00679 145 YGVGVLITGKSGVGKSETALELINR 169 (304)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3689999999999999998877765
No 420
>PRK06620 hypothetical protein; Validated
Probab=74.67 E-value=3.5 Score=46.23 Aligned_cols=20 Identities=40% Similarity=0.567 Sum_probs=17.8
Q ss_pred eEEEecCCCCCCchhhHHHH
Q 000510 150 NSILVSGESGAGKTETTKML 169 (1456)
Q Consensus 150 QsIiisGESGaGKTe~~k~~ 169 (1456)
.++++.|++|+|||..++.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 78999999999999888754
No 421
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=74.66 E-value=84 Score=31.32 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000510 947 EKRVDELQDSVQRLAEKVSNLES 969 (1456)
Q Consensus 947 e~~i~~L~~el~~lee~l~~le~ 969 (1456)
+..++.+..+.+.+++++.++++
T Consensus 80 e~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 80 ELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 422
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=74.63 E-value=2.1 Score=49.13 Aligned_cols=26 Identities=42% Similarity=0.498 Sum_probs=22.1
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
..+.+.|.|++|||||+..|.|+..+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999988877554
No 423
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=74.60 E-value=94 Score=38.01 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 917 SQTQTADEAKQAFTVSEAKNGELTKKLKD 945 (1456)
Q Consensus 917 ~l~~~~~ele~~l~~~e~~~~el~~~~~e 945 (1456)
.+..+..+|-.++....-+.+++++.+.+
T Consensus 372 ~mn~Ere~L~reL~~i~~~~~~L~k~V~~ 400 (622)
T COG5185 372 LMNQEREKLTRELDKINIQSDKLTKSVKS 400 (622)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 34444444444444444444444444443
No 424
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=74.59 E-value=2.2 Score=45.66 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.3
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHH
Q 000510 150 NSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
+.|+|.|-+|||||+.++.+-+.|.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988763
No 425
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=74.56 E-value=2.4 Score=46.27 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=22.3
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~ 175 (1456)
|+|.|-.|||||+.++.+-++|..
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 889999999999999999999864
No 426
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.54 E-value=2.5e+02 Score=35.68 Aligned_cols=54 Identities=11% Similarity=0.231 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 924 EAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 977 (1456)
Q Consensus 924 ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q 977 (1456)
+...++.+.+.++..++..+.++...+.+++..+..++.++.++++.-+..++.
T Consensus 429 ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e 482 (581)
T KOG0995|consen 429 EISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEE 482 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555555555555555555554444444333
No 427
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=74.53 E-value=3e+02 Score=36.60 Aligned_cols=31 Identities=6% Similarity=0.160 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000510 950 VDELQDSVQRLAEKVSNLESENQVLRQQALA 980 (1456)
Q Consensus 950 i~~L~~el~~lee~l~~le~e~~~L~~q~~~ 980 (1456)
+-+-+.+++..+..+..-+.|+..|++++..
T Consensus 624 Lg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 624 LGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555556666666677777776654
No 428
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=74.52 E-value=2.1 Score=47.40 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=21.9
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
....+.|.|++|||||+..|.++..+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56788899999999999888877654
No 429
>PLN02348 phosphoribulokinase
Probab=74.52 E-value=3.3 Score=50.25 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=23.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
++.=-|-|+|-||||||+.++.|.+.|-
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3444566899999999999999998884
No 430
>PRK13695 putative NTPase; Provisional
Probab=74.47 E-value=2.2 Score=46.02 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.3
Q ss_pred EEecCCCCCCchhhHHHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~ 175 (1456)
|+|+|++|+|||+..+.+...+..
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999998887654
No 431
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=74.40 E-value=2.2 Score=47.25 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=17.2
Q ss_pred CCeEEEecCCCCCCchhhHHH
Q 000510 148 KSNSILVSGESGAGKTETTKM 168 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~ 168 (1456)
+-.-++|.|.||||||+..+.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRc 47 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRC 47 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 557899999999999986443
No 432
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=74.39 E-value=2.1 Score=48.72 Aligned_cols=26 Identities=38% Similarity=0.457 Sum_probs=22.2
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~y 172 (1456)
...+.+.|.|++|||||+..+.|+..
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999998888643
No 433
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=74.38 E-value=2.2 Score=47.58 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|++|||||+..|.++..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999888887654
No 434
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=74.23 E-value=2.2 Score=47.11 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.+.+.+.|.|+||||||+..+.++..+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467889999999999999988877543
No 435
>PRK06526 transposase; Provisional
Probab=74.21 E-value=2.5 Score=48.77 Aligned_cols=29 Identities=21% Similarity=0.191 Sum_probs=25.0
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
..+.|++.|.+|+|||..+..+...++..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 45679999999999999999998877653
No 436
>PRK07429 phosphoribulokinase; Provisional
Probab=74.20 E-value=2 Score=51.34 Aligned_cols=26 Identities=35% Similarity=0.452 Sum_probs=21.0
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
+.=-|-|+|.||||||+.++.+...|
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll 32 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLL 32 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHh
Confidence 34467789999999999988887665
No 437
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=74.17 E-value=2.1 Score=48.40 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=23.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|.+|||||+..|.++..+
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999888887654
No 438
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=74.11 E-value=2 Score=50.42 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=23.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.++..+
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999988887654
No 439
>PRK09087 hypothetical protein; Validated
Probab=74.10 E-value=3.5 Score=46.62 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=19.6
Q ss_pred CCeEEEecCCCCCCchhhHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMR 171 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~ 171 (1456)
.+..++|.|+||+|||..+..+..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~ 66 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWRE 66 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999988775553
No 440
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=74.07 E-value=2.1 Score=49.11 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=22.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|++|||||+..|.+...+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457889999999999999988887643
No 441
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=74.03 E-value=2.2 Score=49.53 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 136 GDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 136 A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
++.....+...+.-++++|.|.+|||||+..+.+...+..
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 4555555555555589999999999999998888877643
No 442
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=74.03 E-value=2.2 Score=48.08 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~y 172 (1456)
...+.+.|.|.+|||||+..+.|+-.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35788999999999999988887754
No 443
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=74.02 E-value=2.2 Score=48.21 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=22.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|++|||||+..|.+...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999888776543
No 444
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=74.01 E-value=5 Score=49.59 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 132 VFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 132 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
++.+.-+|-..|..-.+.|-+.|.|.||+|||+..+.++++..
T Consensus 141 ~l~TGir~ID~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~ 183 (442)
T PRK08927 141 PLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNAD 183 (442)
T ss_pred ccccceEEEeeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 3444444555556667899999999999999999998888764
No 445
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=73.92 E-value=68 Score=39.11 Aligned_cols=9 Identities=11% Similarity=0.394 Sum_probs=3.7
Q ss_pred EEEEecccc
Q 000510 429 IIGVLDIYG 437 (1456)
Q Consensus 429 ~IgiLDi~G 437 (1456)
.+-||-+|-
T Consensus 76 mLcilaVP~ 84 (493)
T KOG0804|consen 76 MLCILAVPA 84 (493)
T ss_pred EEEEEeccc
Confidence 344444443
No 446
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=73.89 E-value=2.2 Score=48.88 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.+.+.+.|.|+||||||+..+.+...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 357889999999999999888776543
No 447
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=73.88 E-value=2.2 Score=49.29 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.6
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
..+.+.|.|+||||||+..|.|+..+
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999888665
No 448
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=73.88 E-value=2.2 Score=48.34 Aligned_cols=27 Identities=22% Similarity=0.514 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.+...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999988886544
No 449
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=73.74 E-value=2.4 Score=44.71 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.5
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 150 NSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
=.|.|+|..|+|||+.++.+...|..-
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 369999999999999999998888653
No 450
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=73.73 E-value=4.4 Score=51.30 Aligned_cols=107 Identities=27% Similarity=0.351 Sum_probs=59.9
Q ss_pred cCCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCC-----CCcccHHHHHhhcchHHHhccC------ccccCCCCCCc
Q 000510 146 EGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG-----VEGRTVEQQVLESNPVLEAFGN------AKTVRNNNSSR 214 (1456)
Q Consensus 146 ~~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~-----~~~~~ie~~il~snpiLEaFGN------AkT~rN~NSSR 214 (1456)
-..||.+||-||.|||||+ .|-+||+..|-.+. +..+.|.. +--|.-+=|..|+ .-|+|=++++
T Consensus 63 ve~nqvlIviGeTGsGKST---QipQyL~eaG~~~~g~I~~TQPRRVAa-vslA~RVAeE~~~~lG~~VGY~IRFed~t- 137 (674)
T KOG0922|consen 63 VEDNQVLIVIGETGSGKST---QIPQYLAEAGFASSGKIACTQPRRVAA-VSLAKRVAEEMGCQLGEEVGYTIRFEDST- 137 (674)
T ss_pred HHHCCEEEEEcCCCCCccc---cHhHHHHhcccccCCcEEeecCchHHH-HHHHHHHHHHhCCCcCceeeeEEEecccC-
Confidence 3579999999999999997 58899987653221 11122221 1112334455555 2344444433
Q ss_pred cccEEEEEecCCCccceeeeeeeccCCccc-cccCCCCCcceeeh
Q 000510 215 FGKFVEIQFDKNGRISGAAIRTYLLERSRV-CQISDPERNYHCFY 258 (1456)
Q Consensus 215 fGk~~~l~f~~~g~i~ga~i~tyLLEksRv-v~q~~~ErnfHiFY 258 (1456)
++=++|-|=.+|-+--=.+..=+|+|=-| +--...||+-|.=-
T Consensus 138 -s~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDi 181 (674)
T KOG0922|consen 138 -SKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDI 181 (674)
T ss_pred -CCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHH
Confidence 34566666666654433333344666434 44456788777543
No 451
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.70 E-value=4.2 Score=51.61 Aligned_cols=56 Identities=21% Similarity=0.385 Sum_probs=41.3
Q ss_pred HHHhhcCCcCCC--CchhhhHHHHHHHHHH-hcCCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 117 MEQYKGAAFGEL--SPHVFAVGDAAYRAMI-NEGKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 117 ~~~y~~~~~~~~--~PHifaiA~~Ay~~m~-~~~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
.++|+-..+.++ .+|+-. +.+++. ..+-+++++++|..|.|||++++.+.+.|-+.
T Consensus 7 ~~kyRP~~f~divGq~~v~~----~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVR----ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHH----HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 466776666665 355544 444444 45678999999999999999999999998653
No 452
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=73.68 E-value=2.3 Score=47.35 Aligned_cols=27 Identities=19% Similarity=0.414 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|++|||||+..|.++..+
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999888877553
No 453
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.64 E-value=3.3 Score=53.20 Aligned_cols=55 Identities=24% Similarity=0.385 Sum_probs=39.2
Q ss_pred HHhhcCCcCCC--CchhhhHHHHHHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 118 EQYKGAAFGEL--SPHVFAVGDAAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 118 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
++|+-..+.++ ..|+-..-.+++ ...+-.+++|++|+.|.|||++++.+.+.|-+
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al---~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHAL---EQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHH---HhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 56665555544 456554333332 23456789999999999999999999999975
No 454
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=73.60 E-value=2.2 Score=52.76 Aligned_cols=36 Identities=31% Similarity=0.405 Sum_probs=26.6
Q ss_pred HHHHHHhcCCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 139 AYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 139 Ay~~m~~~~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
.++.+... ..==|+|+|..|||||+|.--+++++-+
T Consensus 249 ~~~~~~~~-p~GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 249 RLLRLLNR-PQGLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred HHHHHHhC-CCeEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 44444432 3345778999999999999998888864
No 455
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=73.58 E-value=2.3 Score=48.79 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.++..+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 457889999999999999998888654
No 456
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=73.58 E-value=2.2 Score=48.04 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=22.1
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
..+.+.|.|++|||||+..|.+...+
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56889999999999999988887543
No 457
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=73.57 E-value=14 Score=45.63 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=32.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 912 RGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKV 964 (1456)
Q Consensus 912 ~~~le~l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l 964 (1456)
...+++.+.+.++++++++.++.+.+.+.++..+++.++++++++++.|++++
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666777777766666666666666666666666666665554
No 458
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.53 E-value=3.5 Score=53.13 Aligned_cols=54 Identities=28% Similarity=0.514 Sum_probs=38.5
Q ss_pred HHhhcCCcCCC--CchhhhHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 118 EQYKGAAFGEL--SPHVFAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 118 ~~y~~~~~~~~--~PHifaiA~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
++||-..+.++ .+|+ -++..++... +-.+++|++|..|.|||++++.+-+.|-+
T Consensus 7 rKyRPktFddVIGQe~v----v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 7 RKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HHhCCCCHHHhcCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45665555544 4555 3344444444 44789999999999999999999999864
No 459
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=73.52 E-value=1.1e+02 Score=37.62 Aligned_cols=104 Identities=17% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 000510 877 LKMAARETGALQEAKNKLEKRVEELTWRLQIE-KRLRGLLQSQTQTADEAKQAFTVS----EAKNGELTKKLKDAEKRVD 951 (1456)
Q Consensus 877 Lk~ea~~~~~l~~~~~kLe~kv~eL~~rl~~e-k~~~~~le~l~~~~~ele~~l~~~----e~~~~el~~~~~ele~~i~ 951 (1456)
+..-..++..+++....|+.+++.|+..+..+ .-....|++.+-+.+.|++++.++ +.++..+..++...|+++.
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMA 293 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000510 952 -ELQDSVQRLAEKVSNLESENQVLRQQALA 980 (1456)
Q Consensus 952 -~L~~el~~lee~l~~le~e~~~L~~q~~~ 980 (1456)
+..+..+++.|.++..+..+..++++...
T Consensus 294 Yqs~eRaRdi~E~~Es~qtRisklE~~~~Q 323 (395)
T PF10267_consen 294 YQSYERARDIWEVMESCQTRISKLEQQQQQ 323 (395)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
No 460
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=73.51 E-value=2.4 Score=47.82 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=23.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.+...+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 467899999999999999998888665
No 461
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=73.51 E-value=37 Score=30.20 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 920 QTADEAKQAFTVSEAKNGELTKKLKDAEKRVDEL 953 (1456)
Q Consensus 920 ~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L 953 (1456)
.....++.++.+.+.++.++..++..++.+++.+
T Consensus 25 ~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 25 SANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444455555555544444444444444433
No 462
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=73.49 E-value=2.4 Score=45.94 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|.+|||||+..|.++..+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 357889999999999999888877654
No 463
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=73.48 E-value=1.6 Score=56.58 Aligned_cols=27 Identities=37% Similarity=0.553 Sum_probs=25.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
++.+.+.|.|+||||||+.++.+++++
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999999999987
No 464
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=73.47 E-value=2.4 Score=47.64 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=21.3
Q ss_pred EEEecCCCCCCchhhHHHHHHHHH
Q 000510 151 SILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 151 sIiisGESGaGKTe~~k~~~~yla 174 (1456)
.|.|.|.||||||+.+|.+...|-
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987664
No 465
>PLN02318 phosphoribulokinase/uridine kinase
Probab=73.34 E-value=3.5 Score=52.36 Aligned_cols=40 Identities=30% Similarity=0.333 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHH
Q 000510 133 FAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRY 172 (1456)
Q Consensus 133 faiA~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~k~~~~y 172 (1456)
|=++-+|-.-+... +..--|-|+|.||||||+.++.|...
T Consensus 48 ~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 48 FFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred hhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 33444444433332 23357778999999999999888654
No 466
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=73.33 E-value=2.1 Score=47.69 Aligned_cols=32 Identities=34% Similarity=0.564 Sum_probs=25.7
Q ss_pred HHHhcCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 142 AMINEGKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 142 ~m~~~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.....+.++.|+|.|..|+|||...+.+++.+
T Consensus 13 ~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 13 ELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 34455678999999999999999998888877
No 467
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=73.20 E-value=2.4 Score=46.90 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=23.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|++|||||+..+.++..+
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 467899999999999999888877654
No 468
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=73.20 E-value=1.7 Score=50.18 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=25.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
.+.+.+.|.|+||||||+..|.++..+..
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p 52 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 56789999999999999999999888754
No 469
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=73.19 E-value=2.1 Score=55.06 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.6
Q ss_pred CeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 149 SNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 149 ~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
+=-|+|+|..|||||++...+++++.
T Consensus 316 ~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 316 QGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 45688999999999999988888873
No 470
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=73.17 E-value=2.3 Score=47.84 Aligned_cols=27 Identities=30% Similarity=0.560 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|++|||||+..|.++..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999888876543
No 471
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=73.12 E-value=2.3 Score=49.26 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=23.1
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|+||||||+..|.++..+
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 467889999999999999998887743
No 472
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=73.09 E-value=73 Score=38.95 Aligned_cols=16 Identities=31% Similarity=0.349 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 000510 398 DALAKTIYSRLFDWIV 413 (1456)
Q Consensus 398 dalak~lY~~lF~wiV 413 (1456)
-+|.+.+|+-|=+|+=
T Consensus 50 ~Tlsed~ysTldnll~ 65 (527)
T PF15066_consen 50 FTLSEDIYSTLDNLLG 65 (527)
T ss_pred chhhHHHHhhhhhccC
Confidence 3578888888777643
No 473
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=73.07 E-value=1.6 Score=56.57 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=25.4
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
++.+.|.|.|+||||||+..|.++..+..
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~p 387 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFDP 387 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 56789999999999999999999887643
No 474
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=73.07 E-value=3.9 Score=53.42 Aligned_cols=58 Identities=24% Similarity=0.410 Sum_probs=39.6
Q ss_pred HHHhhcCCcCCCCchhhhHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 117 MEQYKGAAFGELSPHVFAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 117 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
.++|+-..+.++--|-.++ ...+..... +-..++|++|+.|.|||++++.+.+.|-+.
T Consensus 9 ~~KyRP~~f~dIiGQe~~v--~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 9 YRKYRPKTFDDIVGQDHIV--QTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred HHHhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 3567655555554333222 234444444 568999999999999999999998888653
No 475
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=73.03 E-value=2.5 Score=45.89 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
.+.+.+.|.|.||||||+..+.++..+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999888877654
No 476
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=73.02 E-value=1.6e+02 Score=33.47 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=12.5
Q ss_pred hCCCCccChhhHHhhhh
Q 000510 665 AGYPTRRTFYEFVNRFG 681 (1456)
Q Consensus 665 ~gyp~r~~~~~F~~ry~ 681 (1456)
-.||+|-.+++|+..-+
T Consensus 122 idfpsrhdwdd~fm~~k 138 (445)
T KOG2891|consen 122 IDFPSRHDWDDFFMDAK 138 (445)
T ss_pred CCCCcccchHHHHhhhh
Confidence 46888888888876554
No 477
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=73.00 E-value=3.7 Score=49.39 Aligned_cols=30 Identities=27% Similarity=0.549 Sum_probs=26.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
..-..|+|+|++|+|||..++.+-+|+-..
T Consensus 36 p~~~~vli~G~~GtGKs~~ar~~~~~l~~~ 65 (350)
T CHL00081 36 PKIGGVMIMGDRGTGKSTTIRALVDLLPEI 65 (350)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 344689999999999999999999998753
No 478
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=73.00 E-value=2.3 Score=49.42 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.4
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYLA 174 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yla 174 (1456)
..+.+.|.|+||||||+..|.|+..+.
T Consensus 49 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 49 ENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 467899999999999999999987653
No 479
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=72.93 E-value=3.2 Score=46.41 Aligned_cols=29 Identities=28% Similarity=0.229 Sum_probs=24.2
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHHh
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYLAYL 176 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yla~~ 176 (1456)
+...++|+|++|+|||..+..++..++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~ 46 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ 46 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 56779999999999999988887777643
No 480
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=72.92 E-value=3.3 Score=45.23 Aligned_cols=47 Identities=23% Similarity=0.452 Sum_probs=30.4
Q ss_pred EEecCCCCCCchhhHHHHHHHHHHhcCCCCCCcccHHHHHhhcch-----HHHhcc
Q 000510 152 ILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNP-----VLEAFG 202 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~~il~snp-----iLEaFG 202 (1456)
|.|+|-.|||||+.++++-... +-.--+...+-.+++..+. |.+.||
T Consensus 2 i~itG~~gsGKst~~~~l~~~~----~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg 53 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKY----HFPVIDADKIAHQVVEKGSPAYEKIVDHFG 53 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhc----CCeEEeCCHHHHHHHhcCChHHHHHHHHHC
Confidence 8899999999999888666543 1111112345455665544 778888
No 481
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.90 E-value=2.4 Score=46.56 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=21.3
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMR 171 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~ 171 (1456)
...+.+.|.|+||||||+..|.++-
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3568899999999999998888763
No 482
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.83 E-value=3.8 Score=53.08 Aligned_cols=58 Identities=29% Similarity=0.444 Sum_probs=39.0
Q ss_pred HHHHhhcCCcCCCCchhhhHH--HHHHHHHHh-cCCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 116 MMEQYKGAAFGELSPHVFAVG--DAAYRAMIN-EGKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 116 ~~~~y~~~~~~~~~PHifaiA--~~Ay~~m~~-~~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
..++|+-....++.-|-=.+. ..+...+.. ....+.++|+|.+|+|||++++.+...+
T Consensus 74 W~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 74 WVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred hHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 567787777777654444443 233332222 2345679999999999999999998765
No 483
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=72.83 E-value=88 Score=35.94 Aligned_cols=58 Identities=19% Similarity=0.246 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 921 TADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQA 978 (1456)
Q Consensus 921 ~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~lee~l~~le~e~~~L~~q~ 978 (1456)
+..+++.....++.......++...++.++..++..+..+.+.....+.|...++.++
T Consensus 55 k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el 112 (246)
T PF00769_consen 55 KRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEEL 112 (246)
T ss_dssp HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444433333444444444444444444444444444444444444443
No 484
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=72.82 E-value=67 Score=29.91 Aligned_cols=8 Identities=50% Similarity=0.796 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 000510 892 NKLEKRVE 899 (1456)
Q Consensus 892 ~kLe~kv~ 899 (1456)
.+||.||.
T Consensus 7 eqLE~KIq 14 (79)
T PRK15422 7 EKLEAKVQ 14 (79)
T ss_pred HHHHHHHH
Confidence 34444443
No 485
>PRK05642 DNA replication initiation factor; Validated
Probab=72.82 E-value=5.9 Score=45.06 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=22.3
Q ss_pred eEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 150 NSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 150 QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
-.++|.|++|+|||..+..+..++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~ 71 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQ 71 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999888877754
No 486
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=72.82 E-value=75 Score=43.33 Aligned_cols=37 Identities=11% Similarity=0.187 Sum_probs=19.7
Q ss_pred CCcEEEeccceeeecccchhhhc-----ccchHHHHHHHHHh
Q 000510 543 TDFTILHYAGEVTYQANHFLDKN-----KDYVVAEHQALLTA 579 (1456)
Q Consensus 543 ~~F~I~Hyag~V~Y~~~~fleKN-----~D~~~~~~~~ll~~ 579 (1456)
++-...-|.-.+.-+.+|-+.-+ -|+++||++.-+..
T Consensus 212 GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~ 253 (1317)
T KOG0612|consen 212 GHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGD 253 (1317)
T ss_pred CcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcC
Confidence 34444444444445555554443 37778877655443
No 487
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=72.79 E-value=2.4 Score=46.05 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=21.9
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
...+.+.|.|++|||||+..|.+...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999877766544
No 488
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=72.79 E-value=3.1 Score=48.09 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=22.0
Q ss_pred CCeEEEecCCCCCCchhhHHHHHHHHHH
Q 000510 148 KSNSILVSGESGAGKTETTKMLMRYLAY 175 (1456)
Q Consensus 148 ~~QsIiisGESGaGKTe~~k~~~~yla~ 175 (1456)
+...++|+|++|+|||..+-.++...+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~ 62 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS 62 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5788999999999999977665555443
No 489
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=72.71 E-value=2.4 Score=49.25 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLM 170 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~ 170 (1456)
...+.+.|.|+||||||+..|.|.
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~ 59 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLV 59 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 490
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=72.68 E-value=1.6e+02 Score=36.28 Aligned_cols=132 Identities=18% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000510 756 ILLRNAAVILQSFLRGEMARKLYEQLRREAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFRLRKRTKAA 835 (1456)
Q Consensus 756 ~~~r~aai~IQa~~Rg~laRk~~~~~r~~~AAi~IQ~~~R~~~aRk~~~~~r~a~i~iQs~~Rg~laRr~~~~~r~~~aa 835 (1456)
...+-...+-++++--++.=.++.+..++.||-++|-.|.-|+..|-+.+.-.+
T Consensus 336 isRKLeLt~aEKhVhNFMmDtqLTk~~KnAAA~VLqeTW~i~K~trl~~k~~~~-------------------------- 389 (489)
T KOG3684|consen 336 IARKLELTKAEKHVHNFMMDTQLTKEHKNAAANVLQETWLIYKHTKLVSKGDQA-------------------------- 389 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchH--------------------------
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000510 836 IIAQAQWRCHQAYSYYKKLQRAIIVSQCGWRCRVARRELRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRGLL 915 (1456)
Q Consensus 836 i~IQ~~~R~~~~R~~y~~~~~a~i~iQ~~~R~~~aRrel~~Lk~ea~~~~~l~~~~~kLe~kv~eL~~rl~~ek~~~~~l 915 (1456)
+.|+++++...|+.. -+..|.+.+++.+.+.....+.+....+..-+.++..+-+.
T Consensus 390 ----------rlR~hQRkfL~AI~~------fR~Vk~~qRkl~e~~nsl~d~aK~~~~myd~~~~l~~~q~~-------- 445 (489)
T KOG3684|consen 390 ----------RLRKHQRKFLQAIHQ------FRSVKWEQRKLSEQANSLVDLAKTQNDMYDLLQELHSRQEE-------- 445 (489)
T ss_pred ----------HHHHHHHHHHHHHHH------HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHH--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 916 QSQTQTADEAKQAFTVSEAKNGEL 939 (1456)
Q Consensus 916 e~l~~~~~ele~~l~~~e~~~~el 939 (1456)
+++++..++.+++++.+.++.+
T Consensus 446 --le~qI~~Le~kl~~l~~~l~s~ 467 (489)
T KOG3684|consen 446 --LEKQIDTLESKLEALTASLSSL 467 (489)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhC
No 491
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=72.67 E-value=1e+02 Score=37.77 Aligned_cols=106 Identities=17% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000510 874 LRKLKMAARETGALQEAKNKLEK----RVEELTWRLQIEKRLRGLLQ-SQTQTADEAKQAFTVSEAKNGELTKKLK-DAE 947 (1456)
Q Consensus 874 l~~Lk~ea~~~~~l~~~~~kLe~----kv~eL~~rl~~ek~~~~~le-~l~~~~~ele~~l~~~e~~~~el~~~~~-ele 947 (1456)
+.++++.......+.....+|+. ++..+.+.|++|+-....|| .++.-.+--..++..++.++..+++++. ...
T Consensus 218 ~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~ 297 (395)
T PF10267_consen 218 LEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSY 297 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000510 948 KRVDELQDSVQRLAEKVSNLESENQVLRQQALAIS 982 (1456)
Q Consensus 948 ~~i~~L~~el~~lee~l~~le~e~~~L~~q~~~l~ 982 (1456)
++.+++.+-++....+++++| +...++...+.
T Consensus 298 eRaRdi~E~~Es~qtRisklE---~~~~Qq~~q~e 329 (395)
T PF10267_consen 298 ERARDIWEVMESCQTRISKLE---QQQQQQVVQLE 329 (395)
T ss_pred HHHhHHHHHHHHHHHHHHHHH---HHHhhhhhhhc
No 492
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.66 E-value=10 Score=48.29 Aligned_cols=52 Identities=31% Similarity=0.397 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000510 762 AVILQSFLRGEMARKLYEQLRREAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMV 821 (1456)
Q Consensus 762 ai~IQa~~Rg~laRk~~~~~r~~~AAi~IQ~~~R~~~aRk~~~~~r~a~i~iQs~~Rg~l 821 (1456)
+.-||+.-+..-.|.. ..|+++||+.||++||||++|++|+ +.||.-|+.+.
T Consensus 10 a~fl~k~~qeREer~~--qrrr~~aa~~iq~~lrsyl~Rkk~~------~~I~~e~d~~f 61 (1096)
T KOG4427|consen 10 AAFLAKVSQEREERSY--QRRREAAALFIQRVLRSYLVRKKAQ------IEIQEEFDNLF 61 (1096)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhh
No 493
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.61 E-value=2.5 Score=47.69 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLM 170 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~ 170 (1456)
...|.+.|.|+||||||+..|.+.
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~ 50 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLM 50 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 494
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=72.59 E-value=1.7 Score=57.87 Aligned_cols=43 Identities=21% Similarity=0.392 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHHHHHHHhcCCCCCCcccHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQ 189 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~~yla~~~~~~~~~~~~ie~ 189 (1456)
.+.|.|.|.|+||||||+..|.++..+.--+|.-.-++.++.+
T Consensus 498 ~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 540 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKD 540 (708)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHH
No 495
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=72.56 E-value=4.7 Score=47.57 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHhc-CCCeEEEecCCCCCCchhhHHHHHHHH
Q 000510 131 HVFAVGDAAYRAMINE-GKSNSILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 131 HifaiA~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~k~~~~yl 173 (1456)
|+-..-..+....... +..+.+++.|++|+|||..++.+.+.+
T Consensus 11 ~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 11 KVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh
No 496
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=72.56 E-value=84 Score=38.39 Aligned_cols=102 Identities=7% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 880 AARETGALQEAKNKLEKRVEELTWRLQIEKRLRGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQR 959 (1456)
Q Consensus 880 ea~~~~~l~~~~~kLe~kv~eL~~rl~~ek~~~~~le~l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i~~L~~el~~ 959 (1456)
+.+-.....+....+-++++.++...+...+...+.+++.+.+..++++..+++......+.-...++.+.+..--.+..
T Consensus 255 e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~k 334 (622)
T COG5185 255 EQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEK 334 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 000510 960 LAEKVSNLESENQVLRQQALAI 981 (1456)
Q Consensus 960 lee~l~~le~e~~~L~~q~~~l 981 (1456)
+...+...|+|.+.|+.+...+
T Consensus 335 l~~eie~kEeei~~L~~~~d~L 356 (622)
T COG5185 335 LKSEIELKEEEIKALQSNIDEL 356 (622)
T ss_pred HHHHHHHHHHHHHHHHhhHHHH
No 497
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=72.54 E-value=2.5 Score=47.30 Aligned_cols=24 Identities=46% Similarity=0.504 Sum_probs=0.0
Q ss_pred CCCeEEEecCCCCCCchhhHHHHH
Q 000510 147 GKSNSILVSGESGAGKTETTKMLM 170 (1456)
Q Consensus 147 ~~~QsIiisGESGaGKTe~~k~~~ 170 (1456)
...+.+.|.|+||||||+..|.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLT 49 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
No 498
>PRK01156 chromosome segregation protein; Provisional
Probab=72.54 E-value=74 Score=43.72 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 871 RRELRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRV 950 (1456)
Q Consensus 871 Rrel~~Lk~ea~~~~~l~~~~~kLe~kv~eL~~rl~~ek~~~~~le~l~~~~~ele~~l~~~e~~~~el~~~~~ele~~i 950 (1456)
+.....++.+..............+.++.++...+...+.....++.........++.+..++.....+..++..++..+
T Consensus 618 ~~~~~~le~~~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 697 (895)
T PRK01156 618 DKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANR 697 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000510 951 DELQDSVQRLAEKVSNLESENQVLRQQALAI 981 (1456)
Q Consensus 951 ~~L~~el~~lee~l~~le~e~~~L~~q~~~l 981 (1456)
..+..+++.+++.+..++.+...++.....+
T Consensus 698 ~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l 728 (895)
T PRK01156 698 ARLESTIEILRTRINELSDRINDINETLESM 728 (895)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
No 499
>PF15456 Uds1: Up-regulated During Septation
Probab=72.54 E-value=63 Score=33.06 Aligned_cols=76 Identities=25% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000510 882 RETGALQEAKNKLEKRVEELTWRLQIEKRLRGLLQSQTQT--------------ADEAKQAFTVSEAKNGELTKKLKDAE 947 (1456)
Q Consensus 882 ~~~~~l~~~~~kLe~kv~eL~~rl~~ek~~~~~le~l~~~--------------~~ele~~l~~~e~~~~el~~~~~ele 947 (1456)
+++..+++....|..+++.++.++..+.+.+.....+..- ....++++......++++..++..+|
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le 101 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLALESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKLE 101 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 000510 948 KRVDELQDSV 957 (1456)
Q Consensus 948 ~~i~~L~~el 957 (1456)
.+...++..+
T Consensus 102 ~R~~~~~~rL 111 (124)
T PF15456_consen 102 NRLAEVRQRL 111 (124)
T ss_pred HHHHHHHHHH
No 500
>PRK14530 adenylate kinase; Provisional
Probab=72.53 E-value=2.5 Score=47.35 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=0.0
Q ss_pred EEecCCCCCCchhhHHHHHHHH
Q 000510 152 ILVSGESGAGKTETTKMLMRYL 173 (1456)
Q Consensus 152 IiisGESGaGKTe~~k~~~~yl 173 (1456)
|+|.|-+|||||+.++.+.+.+
T Consensus 6 I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 6 ILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Done!