Query 000512
Match_columns 1454
No_of_seqs 528 out of 5528
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 16:39:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000512.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_286-290//hhsearch_pdb/000512hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 675.4 51.0 834 78-1093 379-1299(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 615.0 53.5 841 78-1093 351-1253(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 452.2 33.0 436 166-1095 106-560 (607)
4 2iw3_A Elongation factor 3A; a 1.0 1 1 448.6 40.3 426 166-1092 449-981 (986)
5 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 446.1 31.1 436 166-1095 36-490 (538)
6 3ux8_A Excinuclease ABC, A sub 1.0 1 1 440.0 35.8 214 164-412 30-296 (670)
7 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 432.1 30.9 216 855-1107 269-486 (538)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 426.0 30.8 201 882-1107 361-568 (608)
9 4f4c_A Multidrug resistance pr 1.0 1 1 361.6 14.2 214 853-1093 413-636 (1321)
10 4a82_A Cystic fibrosis transme 1.0 1 1 330.4 18.4 213 853-1093 337-559 (578)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=675.45 Aligned_cols=834 Identities=19% Similarity=0.254 Sum_probs=422.7
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC--CCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 676578999854215656699999999877521999--995069991049999982587767872689899999997666
Q 000512 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGID--LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYL 155 (1454)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 155 (1454)
.+++...++|+.++++..++ ..+.. ..+.+ ....+|+|+|+++.++.
T Consensus 379 ~~~~~~s~~ri~~~l~~~~~-----~~~~~-~~~~~~~~~~g~I~~~nvsF~Y~~------------------------- 427 (1321)
T 4f4c_A 379 LGTAQGAASGIYEVLDRKPV-----IDSSS-KAGRKDMKIKGDITVENVHFTYPS------------------------- 427 (1321)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-----SSCSS-SCCCCCCCCCCCEEEEEEEECCSS-------------------------
T ss_pred HHHHHHHHHHHHHHHCCCCC-----CCCCC-CCCCCCCCCCCCEEEEEEEEECCC-------------------------
T ss_conf 99999999999999717853-----45666-556567788876799985540799-------------------------
Q ss_pred HHCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC---CCEEEEEC
Q ss_conf 415776554236313057784891999975999957999999967989999712399996934798676---52299985
Q 000512 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYIS 232 (1454)
Q Consensus 156 ~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~ 232 (1454)
....++|+|+|+.++||++++|+||+|||||||+++|.|.++|. +|+|.+||+++++... ++.++||+
T Consensus 428 ------~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~ 498 (1321)
T 4f4c_A 428 ------RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVS 498 (1321)
T ss_dssp ------STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred ------CCCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCC---CCCCCCCCCCCHHCCHHHHHHCCCCCC
T ss_conf ------99874333318862288278998058985778888754565164---486157996501125999850466658
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 89988999999999995687217884145659989999861999998868999998623344779999999990995434
Q 000512 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1454)
Q Consensus 233 Q~d~~~~~lTVrEtl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~did~~~~a~~~~~~~~~~~~d~il~~lgL~~~~ 312 (1454)
| |.++++.||||||.|+. +...++.+.++++.. +.+. .+-.|+++.
T Consensus 499 Q-~~~Lf~~TI~eNI~~g~----~~~~~~~v~~a~~~a---------------------~l~~--------~i~~lp~G~ 544 (1321)
T 4f4c_A 499 Q-EPALFNCTIEENISLGK----EGITREEMVAACKMA---------------------NAEK--------FIKTLPNGY 544 (1321)
T ss_dssp S-SCCCCSEEHHHHHHTTC----TTCCHHHHHHHHHHT---------------------TCHH--------HHHHSTTTT
T ss_pred C-CCEEECCCHHHHHHHHC----CCCHHHHHHHHHHHC---------------------CCHH--------HHHCCCCCC
T ss_conf 7-53320786167886415----522099999999875---------------------6546--------887088888
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHC
Q ss_conf 54334644667774456789999997339853413269989998979999999999877039859999836911498513
Q 000512 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1454)
Q Consensus 313 dt~VG~~~~~glSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~f 392 (1454)
||.||+++.. ||||||||++|||+++.+|++++||||||+||+.++..+.++|+++. .++|+|+..| +.++...+
T Consensus 545 ~T~vGe~G~~-LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaH--rls~i~~a 619 (1321)
T 4f4c_A 545 NTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAH--RLSTIRNA 619 (1321)
T ss_dssp SSEESSSSCC-CCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECS--CTTTTTTC
T ss_pred CCEECCCCCC-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEECC--CHHHHHHC
T ss_conf 6075589887-77778799999998725999899845544688789999999999984--7988999736--38789868
Q ss_pred CEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCH-HHHHH--HHCCCHHHHHHHH-CCCCCC-C-----------CC
Q ss_conf 9199955973999439667999998379988999995-78998--7018122445431-038987-6-----------57
Q 000512 393 DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGV-ADFLQ--EVTSRKDQRQYWA-HKEKPY-R-----------FV 456 (1454)
Q Consensus 393 D~i~lL~~G~ivy~G~~~~~~~~F~~lGf~cp~~~~~-aDfl~--ev~s~~~~~~~~~-~~~~~~-~-----------~~ 456 (1454)
|+|++|++|+++.+|+++++.+ +.+. ++... ......+...... ..+... . ..
T Consensus 620 D~Iivl~~G~ive~Gth~eL~~-----------~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1321)
T 4f4c_A 620 DLIISCKNGQVVEVGDHRALMA-----------QQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQAS 688 (1321)
T ss_dssp SEEEEEETTEEEEEECHHHHHT-----------TTCHHHHHHHHHHHHHHHHHHHCC-----------------------
T ss_pred CEEEEEECCEEECCCCHHHHHH-----------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9899963996513689999998-----------53279999996221222233233443322321112222234222222
Q ss_pred CHHHHHHHHHHCHHHHH----HHHHHCCCCCCCCC--CCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99899999982412244----78751397666521--11122-4665567489999999999999971153899999999
Q 000512 457 TVQEFAEAFQSFHVGQK----ISDELRTPFDKSKS--HRAAL-TTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQ 529 (1454)
Q Consensus 457 ~~~e~~~~f~~s~~~~~----~~~el~~~~~~~~~--~~~~l-~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~ 529 (1454)
..++.....+.+..... ..++......+... .+... .......+.+.. +...+..+..+...++.
T Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~ 760 (1321)
T 4f4c_A 689 EMDDIMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEI--------LYHARPHALSLFIGMST 760 (1321)
T ss_dssp ---------------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHH--------HHHTGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHH--------HHHHHHHHHHHHHHHHH
T ss_conf 2110221110132124567740257775315403899999999707863109999--------99987789999999999
Q ss_pred HHHHHHH------HHHHHHCCCC-CCCCCCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHCHHHHHHHHCCCCCHHHH
Q ss_conf 9999999------9987724458-87654464211468899999999--9688999997510146898530577782447
Q 000512 530 IAFVAVV------YMTLFLRTKM-HKDTVTDGGIFAGATFFAITMVN--FNGFSEISMTIAKLPVFYKQRDFRFFPPWAY 600 (1454)
Q Consensus 530 ~~~~ali------~gtif~~~~~-~~~~~~~~~~~~g~lff~~~~~~--~~~~~~i~~~i~~~pvf~kqr~~~~y~~~ay 600 (1454)
.++.+.+ ....++.... +.........+...+|..+.... +..+...........+..+-|.
T Consensus 761 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~--------- 831 (1321)
T 4f4c_A 761 ATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRN--------- 831 (1321)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf 99999999999999999998751793455667899999999999999999999999999999999999999---------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH----CCCHHHH
Q ss_conf 99899986019999999999988761267782678999999999---------9999999999999771----1316789
Q 000512 601 AIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLL---------GVNQMASALFRFIAVT----GRNMVVA 667 (1454)
Q Consensus 601 ~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~rff~~~l~l~---------l~~~~~~~l~~~ia~~----~~~~~iA 667 (1454)
.+-..+.+.|+.++.. -....|+....+.-.. ........++.+++++ ..+...+
T Consensus 832 ~l~~~il~~~~~ffd~------------~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~ 899 (1321)
T 4f4c_A 832 KLFRNVLSQHIGFFDS------------PQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMA 899 (1321)
T ss_dssp HHHHHHHTSCSSSTTS------------GGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHCCCCHHHCC------------CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHH
T ss_conf 9988873499333216------------7888488885025059999999999999999986537777022137868999
Q ss_pred HHHHHHHHHHHHHHHCC----CCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 99999999999998225----56922267889999977299899999999861489665444788654178987224975
Q 000512 668 NTFGSFALLVLLSLGGF----ILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFF 743 (1454)
Q Consensus 668 ~~~~~~~~l~~~l~~Gf----~i~~~~ip~w~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~ 743 (1454)
.. .+++++++.+..+ ..........-.... ...+..+++ .|...++.++..
T Consensus 900 lv--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~e~l--------------------~gi~tIra~~~e 954 (1321)
T 4f4c_A 900 LL--IIAILPIVAFGQYLRGRRFTGKNVKSASEFAD---SGKIAIEAI--------------------ENVRTVQALARE 954 (1321)
T ss_dssp HH--HHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHH---HHHHHHHHH--------------------HTHHHHHHTTTH
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--------------------HHHHHHHHCCCH
T ss_conf 99--99988899999999999999999999999888---988999999--------------------627988861414
Q ss_pred CCC-------------------HHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCC-CCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf 454-------------------03689899999999-999999999987329888-886301001112111112478643
Q 000512 744 AHE-------------------YWYWLGLGALFGFV-LLLNFAYTLALTFLDPFE-KPRAVITEEIESNEQDDRIGGNVQ 802 (1454)
Q Consensus 744 ~~~-------------------~~~w~~~g~l~~~~-i~f~~~~~l~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1454)
... .+.+...+....+. +...+..+++........ .............
T Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~----------- 1023 (1321)
T 4f4c_A 955 DTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYA----------- 1023 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH-----------
T ss_conf 889999999999999999999999999999999999999999998757887537654214789999999-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHCCCCC-CCCCCCCCCCCEEEEECCEEEEECCHHHHHCCCCCCC
Q ss_conf 33457989888888988764464-564101234432027776-6886657787224770403354053023440545786
Q 000512 803 LSTLGGSSNHNTRSGSTDDIRGQ-QSSSQSLSLAEAEASRPK-KKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDK 880 (1454)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 880 (1454)
........... ....+ ..... .+..+..+..+..+..+. ......+.....++|+|++++++.. ..
T Consensus 1024 ~~~~~~~l~~~-~~~~~-~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~----------~~ 1091 (1321)
T 4f4c_A 1024 ITISTSTLGFA-TSYFP-EYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPER----------PE 1091 (1321)
T ss_dssp HHTTTSSTTGG-GGHHH-HHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTS----------CS
T ss_pred HHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC----------CC
T ss_conf 98778899999-99999-99999999998999860766577766778788888818999879857999----------98
Q ss_pred EEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC---CCCCEEEEEECCCCCCCCCCC
Q ss_conf 38833207766089199997469997456996470898886289999996902781---122307889615898899998
Q 000512 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVT 957 (1454)
Q Consensus 881 ~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~lT 957 (1454)
..+|+|+|+.++|||++||+|+||||||||+++|.|... +.+|+|.+||.+... ..+++.++||+|+..++. -|
T Consensus 1092 ~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~-gT 1168 (1321)
T 4f4c_A 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-CS 1168 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS-EE
T ss_pred CCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEEC-CC
T ss_conf 821245169988989999989999819999999956863--899789999998654999999854599878997327-23
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 99999998872089999988999999999999299653-------23324688777779989989999999851997889
Q 000512 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1030 (1454)
Q Consensus 958 V~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~iL~ 1030 (1454)
++|++.|.. .|.+.++ +.++++++..++.+. .|+.+|..| ..||||||||++|||+|+++|+||+
T Consensus 1169 IreNI~~gl---d~~~~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G-~~LSgGQrQriaiARAllr~~~ILi 1240 (1321)
T 4f4c_A 1169 IAENIIYGL---DPSSVTM----AQVEEAARLANIHNFIAELPEGFETRVGDRG-TQLSGGQKQRIAIARALVRNPKILL 1240 (1321)
T ss_dssp HHHHHSSSS---CTTTSCH----HHHHHHHHHTTCHHHHHTSTTTTCSEETTTS-CSSCHHHHHHHHHHHHHHSCCSEEE
T ss_pred HHHHHHCCC---CCCCCCH----HHHHHHHHHHCCHHHHHCCCCCCCCEECCCC-CCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 999974549---9999999----9999999982984999717678999823889-1569999999999999971799899
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 939999999999999999999987489989999468539999873628799249699997699
Q 000512 1031 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1454)
Q Consensus 1031 LDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~illl~~gG~~vy~G~~ 1093 (1454)
||||||+||+.++..|++++++.. +|||+|+++|+++. ...+|++++|++ |+++-+|+.
T Consensus 1241 LDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~-G~IvE~Gth 1299 (1321)
T 4f4c_A 1241 LDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSN-GTIIEKGTH 1299 (1321)
T ss_dssp EESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESS-SSEEEEECH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHH--HHHCCEEEEEEC-CEEEEECCH
T ss_conf 968111578999999999999973-99989996068999--996999999989-899998888
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=615.05 Aligned_cols=841 Identities=18% Similarity=0.240 Sum_probs=402.6
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC--CCCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 67657899985421565669999999987752199--9995069991049999982587767872689899999997666
Q 000512 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGI--DLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYL 155 (1454)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 155 (1454)
.+.+....+|+.++.+..++ ..+ .+..+. +....+++|+|+++.+..
T Consensus 351 ~~~~~~a~~ri~~~l~~~~~-----~~~-~~~~~~~~~~~~g~i~~~~v~~~y~~------------------------- 399 (1284)
T 3g5u_A 351 FANARGAAYEVFKIIDNKPS-----IDS-FSKSGHKPDNIQGNLEFKNIHFSYPS------------------------- 399 (1284)
T ss_dssp HHHHHHHHHHHHHTTSCCCC-----CSS-CCSSCCCCTTCCCCEEEEEEEECCSS-------------------------
T ss_pred HHHHHHHHHHHHHHHCCCCC-----CCC-CCCCCCCCCCCCCEEEEEEEEEECCC-------------------------
T ss_conf 99999999999999728986-----776-66567777777771899998997699-------------------------
Q ss_pred HHCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC---CCEEEEEC
Q ss_conf 415776554236313057784891999975999957999999967989999712399996934798676---52299985
Q 000512 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYIS 232 (1454)
Q Consensus 156 ~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~ 232 (1454)
+...++|+|+|+.++||+.++|+||+|||||||+++|+|.++|+ +|+|.++|+++.+..+ ++.++||+
T Consensus 400 ------~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~ 470 (1284)
T 3g5u_A 400 ------RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVS 470 (1284)
T ss_dssp ------TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred ------CCCCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CEEEEECCEEHHHCCHHHHHHHEEEEC
T ss_conf ------99871012545897599889998999997999999980788999---738999999877579999986548986
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 89988999999999995687217884145659989999861999998868999998623344779999999990995434
Q 000512 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1454)
Q Consensus 233 Q~d~~~~~lTVrEtl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~did~~~~a~~~~~~~~~~~~d~il~~lgL~~~~ 312 (1454)
|++. +++.||+||+.|+.. ...++.+.++++.. +. +.. +..|++..
T Consensus 471 Q~~~-l~~~ti~eNi~~g~~----~~~~~~~~~~~~~~---~~------------------------~~~--i~~l~~g~ 516 (1284)
T 3g5u_A 471 QEPV-LFATTIAENIRYGRE----DVTMDEIEKAVKEA---NA------------------------YDF--IMKLPHQF 516 (1284)
T ss_dssp SSCC-CCSSCHHHHHHHHCS----SCCHHHHHHHHHHT---TC------------------------HHH--HHHSTTGG
T ss_pred CCCC-CCCCCHHHHHHCCCC----CCCHHHHHHHHHHH---CC------------------------HHH--HHHCCCCC
T ss_conf 8875-377669999745798----99999999999982---96------------------------999--97465633
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHC
Q ss_conf 54334644667774456789999997339853413269989998979999999999877039859999836911498513
Q 000512 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1454)
Q Consensus 313 dt~VG~~~~~glSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~f 392 (1454)
||.+|+.+. .||||||||++|||+++.+|++++|||||++||+.++..+.+.++... .++|+++ +.|... +...+
T Consensus 517 ~t~~~~~g~-~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~l~-~i~~~ 591 (1284)
T 3g5u_A 517 DTLVGERGA-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIV-IAHRLS-TVRNA 591 (1284)
T ss_dssp GCCCSSSSC-SSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEE-ECSCHH-HHTTC
T ss_pred CCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEE-EECCHH-HHHCC
T ss_conf 450147878-659999999999999952999899979877779999999999999973--9998999-940778-99749
Q ss_pred CEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCH-HHHHHHHCCCHHHH-HHH-HCCCCCCC--CCCHHHHHHHHHH
Q ss_conf 9199955973999439667999998379988999995-78998701812244-543-10389876--5799899999982
Q 000512 393 DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGV-ADFLQEVTSRKDQR-QYW-AHKEKPYR--FVTVQEFAEAFQS 467 (1454)
Q Consensus 393 D~i~lL~~G~ivy~G~~~~~~~~F~~lGf~cp~~~~~-aDfl~ev~s~~~~~-~~~-~~~~~~~~--~~~~~e~~~~f~~ 467 (1454)
|+|++|++|++++.|+++++.+- ++. ......-....+.+ ... .....+.. .............
T Consensus 592 d~i~vl~~G~i~~~g~~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1284)
T 3g5u_A 592 DVIAGFDGGVIVEQGNHDELMRE-----------KGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIR 660 (1284)
T ss_dssp SEEEECSSSCCCCEECHHHHHHT-----------TSHHHHHHHHTC----------------------------------
T ss_pred CEEEEEECCEEEEECCHHHHHHC-----------CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98999989999997889999867-----------8779999997430022111333333222223443333333320003
Q ss_pred CHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------HHHHHHH
Q ss_conf 4122447875139766--652111122466556748999999999999997115389999999999-------9999999
Q 000512 468 FHVGQKISDELRTPFD--KSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIA-------FVAVVYM 538 (1454)
Q Consensus 468 s~~~~~~~~el~~~~~--~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~-------~~ali~g 538 (1454)
. .........+.. ................+.+..++. .++.+..+..-++..+ ..+.+++
T Consensus 661 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1284)
T 3g5u_A 661 R---RSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKL--------NSTEWPYFVVGIFCAIINGGLQPAFSVIFS 729 (1284)
T ss_dssp --------------------------CCCCCSCCCTTHHHHH--------HHHTCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C---CCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHH--------HCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4---54333445642233211024555313662589999998--------451579999999999999999999999999
Q ss_pred H---HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8---7724458876544642114688999999999--6889999975101468985305777824479989998601999
Q 000512 539 T---LFLRTKMHKDTVTDGGIFAGATFFAITMVNF--NGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSF 613 (1454)
Q Consensus 539 t---if~~~~~~~~~~~~~~~~~g~lff~~~~~~~--~~~~~i~~~i~~~pvf~kqr~~~~y~~~ay~la~~i~~iP~~~ 613 (1454)
. .+.... ..........+...++..+....+ ..............+-.+-|. .+-..+.+.|+.+
T Consensus 730 ~~i~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~---------~l~~~ll~~~~~f 799 (1284)
T 3g5u_A 730 KVVGVFTNGG-PPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRY---------MVFKSMLRQDVSW 799 (1284)
T ss_dssp HHHHHHHSSC-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHCCSHH
T ss_pred HHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHCCCHHH
T ss_conf 9999985568-50336779999999999999999999999999999999999999999---------9999998399888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999887612677826789999999999-------------99999999999977113167899999999999999
Q 000512 614 LEVAVWVFLSYYVVGYDSNAGRFFKQYALLLG-------------VNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 680 (1454)
Q Consensus 614 ~~~~i~~~i~Y~~~gl~~~~~rff~~~l~l~l-------------~~~~~~~l~~~ia~~~~~~~iA~~~~~~~~l~~~l 680 (1454)
++. -....|+....+.-... ..........++..+.-+...+.. .++.+++++
T Consensus 800 f~~------------~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv--~l~~~p~~~ 865 (1284)
T 3g5u_A 800 FDD------------PKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLL--LLAIVPIIA 865 (1284)
T ss_dssp HHS------------CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHH--HHHHHHHHH
T ss_pred HCC------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_conf 757------------899889999999999999999999999999999999999999999996999999--999999999
Q ss_pred HHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC-------HHHHHHH
Q ss_conf 822556922267889999977299899999999861489665444788654178987224975454-------0368989
Q 000512 681 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHE-------YWYWLGL 753 (1454)
Q Consensus 681 ~~Gf~i~~~~ip~w~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~-------~~~w~~~ 753 (1454)
+.+++.. .+..-.....--.+....-...|....-.... .........+.+.-..+. ...|.+
T Consensus 866 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~----a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~- 935 (1284)
T 3g5u_A 866 IAGVVEM-----KMLSGQALKDKKELEGSGKIATEAIENFRTVV----SLTREQKFETMYAQSLQIPYRNAMKKAHVFG- 935 (1284)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTT----TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 9999999-----99999999999999999999999998899999----8465999999999999999999999999999-
Q ss_pred HHHHHHHHHHH-HHHHHHHH---HCCCCCC--CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999-99999987---3298888--863010011121111124786433345798988888898876446456
Q 000512 754 GALFGFVLLLN-FAYTLALT---FLDPFEK--PRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQS 827 (1454)
Q Consensus 754 g~l~~~~i~f~-~~~~l~l~---~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1454)
...++..... +...+.+. ++-..+. .......-..........+ ..... .+.-.....+
T Consensus 936 -~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--------~~~~~~~~~a 1000 (1284)
T 3g5u_A 936 -ITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVG------QVSSF--------APDYAKATVS 1000 (1284)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHH------HHTSS--------SCCSTHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH------HHHHH--------HHHHHHHHHH
T ss_conf -99999999999999999999999999098069999999999999999999------99999--------9999999999
Q ss_pred CCHHHHHHHHHCCCC--CCCCCCCCCCCCEEEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCC
Q ss_conf 410123443202777--668866577872247704033540530234405457863883320776608919999746999
Q 000512 828 SSQSLSLAEAEASRP--KKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGA 905 (1454)
Q Consensus 828 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGa 905 (1454)
..+..+..+..+... ...+...+.....++++|++++++..+ ...+|+|+|+.++|||++||+|+|||
T Consensus 1001 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~----------~~~~l~~vsl~i~~Ge~v~ivG~sGs 1070 (1284)
T 3g5u_A 1001 ASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRP----------SIPVLQGLSLEVKKGQTLALVGSSGC 1070 (1284)
T ss_dssp HHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGG----------GCCSBSSCCEEECSSSEEEEECSSST
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC----------CCEEECCEEEEECCCCEEEEECCCCC
T ss_conf 99999998388766665556654567778579999899779999----------87002030599769988999889999
Q ss_pred CHHHHHHHHCCCCCCCEEEEEEEECCCCCCC---CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 7456996470898886289999996902781---1223078896158988999989999999887208999998899999
Q 000512 906 GKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMF 982 (1454)
Q Consensus 906 GKTTLl~~Lagr~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~ 982 (1454)
|||||+++|+|... +.+|+|.+||.+... ...++.++||+|+..++ ..||+|++.+.... ...+.+ .
T Consensus 1071 GKSTl~~~l~g~~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~----~ 1140 (1284)
T 3g5u_A 1071 GKSTVVQLLERFYD--PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYE----E 1140 (1284)
T ss_dssp THHHHHHHHTTSSC--CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHH----H
T ss_pred CHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCC-CCCHHHHHHCCCCC---CCCCHH----H
T ss_conf 78999999946867--89977989999800078999970268987787406-66699997466877---899999----9
Q ss_pred HHHHHHHCCCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999992996-------53233246887777799899899999998519978899399999999999999999999874
Q 000512 983 IDEVMELVELN-------PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055 (1454)
Q Consensus 983 v~~vl~~l~L~-------~~~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~iL~LDEPTsGLD~~~a~~i~~~l~~~~~ 1055 (1454)
+++.++..++. +-.|+.+|..+ ..||||||||++||++|+.+|+||+|||||+|||..+...|++.+++. .
T Consensus 1141 i~~~~~~~~~~~~i~~l~~gldt~vge~G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~ 1218 (1284)
T 3g5u_A 1141 IVRAAKEANIHQFIDSLPDKYNTRVGDKG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-R 1218 (1284)
T ss_dssp HHHHHHHHTCHHHHSSTTTGGGCBCSTTS-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHCCHHHHHHCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-C
T ss_conf 99999983959999727042456117888-933899999999999997499999986875557999999999999986-7
Q ss_pred CCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 89989999468539999873628799249699997699
Q 000512 1056 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1454)
Q Consensus 1056 ~g~Tvi~t~Hqps~~i~~~fD~illl~~gG~~vy~G~~ 1093 (1454)
.|+|||+++|+++. + ..+|++++|.+ |+++..|+.
T Consensus 1219 ~~~tvi~isH~l~~-i-~~~dri~vl~~-G~i~~~g~~ 1253 (1284)
T 3g5u_A 1219 EGRTCIVIAHRLST-I-QNADLIVVIQN-GKVKEHGTH 1253 (1284)
T ss_dssp SSSCEEEECSCTTG-G-GSCSEEEEEET-BEEEEEECH
T ss_pred CCCEEEEEECCHHH-H-HCCCEEEEEEC-CEEEEECCH
T ss_conf 99989999558799-9-80998999989-989997789
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=452.25 Aligned_cols=436 Identities=23% Similarity=0.279 Sum_probs=308.4
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 36313057784891999975999957999999967989999712399---------9969347986-----765229998
Q 000512 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV---------TYNGHDMDEF-----VPQRTAAYI 231 (1454)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V---------~~nG~~~~~~-----~~~~~~~yv 231 (1454)
.+|+|+| .+++|+.++|+|||||||||||++|+|.+.|+ +|++ .++|.++... ..+..++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred EEECCCC-CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHEECCEEHHHHHHHHHHHHCCEEEE
T ss_conf 4048989-88989999999999972999999985799878---7854666301331368776134323455653446886
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 58998899---999999999568721788414565998999986199999886899999862334477999999999099
Q 000512 232 SQHDNHIG---EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1454)
Q Consensus 232 ~Q~d~~~~---~lTVrEtl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~did~~~~a~~~~~~~~~~~~d~il~~lgL 308 (1454)
.|.....+ ..||+|++.... . ...++.+++.+||
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~~------~-------------------------------------~~~~~~~L~~lgL 218 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKVD------E-------------------------------------VGKFEEVVKELEL 218 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHTC------C-------------------------------------SSCHHHHHHHTTC
T ss_pred ECHHHHCHHHCCCCHHHHHHHHH------H-------------------------------------HHHHHHHHHHCCC
T ss_conf 32043130220050999963167------9-------------------------------------9999999997599
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHH
Q ss_conf 54345433464466777445678999999733985341326998999897999999999987703985999983691149
Q 000512 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (1454)
Q Consensus 309 ~~~~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~ 388 (1454)
++..|..++ .|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++.. .+.|+|+ +.|...++
T Consensus 219 ~~~~~~~~~-----~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIi-vsHdl~~~ 291 (607)
T 3bk7_A 219 ENVLDRELH-----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLV-VEHDLAVL 291 (607)
T ss_dssp TTGGGSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE-ECSCHHHH
T ss_pred CCHHCCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHH
T ss_conf 704379805-----6999999999999998459999999797435899999999999999986-6998999-96485898
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 85139199955973999439667999998379988999995789987018122445431038987657998999999824
Q 000512 389 YDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSF 468 (1454)
Q Consensus 389 ~~~fD~i~lL~~G~ivy~G~~~~~~~~F~~lGf~cp~~~~~aDfl~ev~s~~~~~~~~~~~~~~~~~~~~~e~~~~f~~s 468 (1454)
..++|+|++|.++...| |.. ..+
T Consensus 292 ~~~adri~vl~~~~~~~-g~~----------------------------------------~~~---------------- 314 (607)
T 3bk7_A 292 DYLSDVIHVVYGEPGVY-GIF----------------------------------------SKP---------------- 314 (607)
T ss_dssp HHHCSEEEEEESCTTTE-EEE----------------------------------------CCC----------------
T ss_pred HHHCCEEEEECCCCCCC-CEE----------------------------------------CCC----------------
T ss_conf 86589999977986445-212----------------------------------------241----------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 12244787513976665211112246655674899999999999999711538999999999999999998772445887
Q 000512 469 HVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHK 548 (1454)
Q Consensus 469 ~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~gtif~~~~~~~ 548 (1454)
+. . ++.. . .+.
T Consensus 315 ----------------------------~~--~---------~~~i----------~--------------~~~------ 325 (607)
T 3bk7_A 315 ----------------------------KG--T---------RNGI----------N--------------EFL------ 325 (607)
T ss_dssp ----------------------------EE--H---------HHHH----------H--------------HHH------
T ss_pred ----------------------------HH--H---------HHHH----------H--------------HHH------
T ss_conf ----------------------------32--7---------9999----------9--------------997------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 65446421146889999999996889999975101468985305777824479989998601999999999998876126
Q 000512 549 DTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVG 628 (1454)
Q Consensus 549 ~~~~~~~~~~g~lff~~~~~~~~~~~~i~~~i~~~pvf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g 628 (1454)
T Consensus 326 -------------------------------------------------------------------------------- 325 (607)
T 3bk7_A 326 -------------------------------------------------------------------------------- 325 (607)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 77826789999999999999999999999771131678999999999999998225569222678899999772998999
Q 000512 629 YDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQ 708 (1454)
Q Consensus 629 l~~~~~rff~~~l~l~l~~~~~~~l~~~ia~~~~~~~iA~~~~~~~~l~~~l~~Gf~i~~~~ip~w~~W~~~isp~~y~~ 708 (1454)
.|+..
T Consensus 326 -----------------------------------------------------~~~~~---------------------- 330 (607)
T 3bk7_A 326 -----------------------------------------------------QGYLK---------------------- 330 (607)
T ss_dssp -----------------------------------------------------HTEET----------------------
T ss_pred -----------------------------------------------------HHCCH----------------------
T ss_conf -----------------------------------------------------51013----------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCC
Q ss_conf 99999861489665444788654178987224975454036898999999999999999999873298888863010011
Q 000512 709 NAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEI 788 (1454)
Q Consensus 709 ~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~~~i~f~~~~~l~l~~l~~~~~~~~~~~~~~ 788 (1454)
... . .+... +
T Consensus 331 ------------------~~~--~--------~~~~~------------------------------~------------ 340 (607)
T 3bk7_A 331 ------------------DEN--V--------RFRPY------------------------------E------------ 340 (607)
T ss_dssp ------------------TTT--E--------ECCSS------------------------------C------------
T ss_pred ------------------HHH--H--------HCCCC------------------------------C------------
T ss_conf ------------------455--4--------30121------------------------------2------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCEEEEECC
Q ss_conf 12111112478643334579898888889887644645641012344320277766886657787224770403354053
Q 000512 789 ESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMP 868 (1454)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 868 (1454)
. ..... ... .. +.....+.++|++..+.
T Consensus 341 -------~------------------~~~~~------------------~~~-~~------~~~~~~l~~~~l~~~~~-- 368 (607)
T 3bk7_A 341 -------I------------------RFTKL------------------SER-VD------VERETLVEYPRLVKDYG-- 368 (607)
T ss_dssp -------C------------------CCCCS------------------TTS-CC------CCCCEEEEECCEEEECS--
T ss_pred -------C------------------CCCCC------------------CCC-CC------CCCCEEEEEECEEEEEC--
T ss_conf -------3------------------45657------------------775-44------46752899913098744--
Q ss_pred HHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf 02344054578638833207766089199997469997456996470898886289999996902781122307889615
Q 000512 869 EEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQ 948 (1454)
Q Consensus 869 ~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q 948 (1454)
. ..|+++++.+++||++||+||||||||||+++|+|... +.+|+|.+ .+.++|++|
T Consensus 369 -----------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----------~~~i~~v~Q 424 (607)
T 3bk7_A 369 -----------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----------DLTVAYKPQ 424 (607)
T ss_dssp -----------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC----------CCCEEEECS
T ss_pred -----------C-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCEEEEE----------EEEEEEEEC
T ss_conf -----------3-48993515327998999999999899999999966988--88628999----------027999805
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCE
Q ss_conf 89889999899999998872089999988999999999999299653233246887777799899899999998519978
Q 000512 949 NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028 (1454)
Q Consensus 949 ~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~i 1028 (1454)
+....+.+||.|.+....... ....+.++++++.++|.+..+..+ ..||||||||+.||++|+.+|++
T Consensus 425 ~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~l 492 (607)
T 3bk7_A 425 YIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADI 492 (607)
T ss_dssp SCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSE
T ss_pred CCCCCCCCCHHHHHHHHHCCC-------CCHHHHHHHHHHHCCCCHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCE
T ss_conf 766778984999997531258-------778999999998769933754992-----23799999999999999748998
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEECCCCC
Q ss_conf 899399999999999999999999874-8998999946853999987362879924-969999769987
Q 000512 1029 IFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPLGR 1095 (1454)
Q Consensus 1029 L~LDEPTsGLD~~~a~~i~~~l~~~~~-~g~Tvi~t~Hqps~~i~~~fD~illl~~-gG~~vy~G~~g~ 1095 (1454)
|+|||||+|||..+...+++.|+++++ .|.|||+++|++. .+...+|++++|.. .|+.+..|++.+
T Consensus 493 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 493 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEECCCCCEEEECCCHHH
T ss_conf 99968744789999999999999999747989999909899-999869999999598306974289899
No 4
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=448.65 Aligned_cols=426 Identities=21% Similarity=0.260 Sum_probs=300.5
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCC-CCCCCCCHH
Q ss_conf 3631305778489199997599995799999996798999971239999693479867652299985899-889999999
Q 000512 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD-NHIGEMTVR 244 (1454)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lTVr 244 (1454)
.+|+|+|+.+++|+.++|+|||||||||||++|+| |+| +|.+... ....+|++|+. ...+.+||.
T Consensus 449 ~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv~ 514 (986)
T 2iw3_A 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSVL 514 (986)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBHH
T ss_pred EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC---------CCC--CCCCCCC---CEEEEEECCCCCCCCCCCCHH
T ss_conf 76741269981897899999999879999999948---------986--7976635---416999735643245578099
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCC
Q ss_conf 99995687217884145659989999861999998868999998623344779999999990995-43454334644667
Q 000512 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMIRG 323 (1454)
Q Consensus 245 Etl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~did~~~~a~~~~~~~~~~~~d~il~~lgL~-~~~dt~VG~~~~~g 323 (1454)
|++.+ ...+ . ...++.+++.+||+ +..+..++ .
T Consensus 515 e~l~~--~~~~--~-------------------------------------~~~v~~~L~~lgL~~~~~~~~~~-----~ 548 (986)
T 2iw3_A 515 DFVFE--SGVG--T-------------------------------------KEAIKDKLIEFGFTDEMIAMPIS-----A 548 (986)
T ss_dssp HHHHT--TCSS--C-------------------------------------HHHHHHHHHHTTCCHHHHHSBGG-----G
T ss_pred HHHHH--HHCC--H-------------------------------------HHHHHHHHHHCCCCHHHHCCCCC-----C
T ss_conf 99998--6127--9-------------------------------------99999999986998446439802-----0
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEE
Q ss_conf 77445678999999733985341326998999897999999999987703985999983691149851391999559739
Q 000512 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1454)
Q Consensus 324 lSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~lL~~G~i 403 (1454)
||||||||+.||++++.+|++++|||||+|||..+..++.+.|++ .+.|+|+ +.|...++.+.+|++++|.+|++
T Consensus 549 LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIi-vSHdl~~l~~~adrii~L~~G~i 623 (986)
T 2iw3_A 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSIT-ISHDSVFLDNVCEYIINYEGLKL 623 (986)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEE-ECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEE-EECCHHHHHHHCCEEEEEECCEE
T ss_conf 799999999999999649999999797667999999999999986----7998999-97988999986899999979944
Q ss_pred E-EECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCC
Q ss_conf 9-943966799999837998899999578998701812244543103898765799899999982412244787513976
Q 000512 404 V-YQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPF 482 (1454)
Q Consensus 404 v-y~G~~~~~~~~F~~lGf~cp~~~~~aDfl~ev~s~~~~~~~~~~~~~~~~~~~~~e~~~~f~~s~~~~~~~~el~~~~ 482 (1454)
+ +.|+.+++...- +
T Consensus 624 v~~~G~~~e~~~~~-----------------------------------~------------------------------ 638 (986)
T 2iw3_A 624 RKYKGNFTEFVKKC-----------------------------------P------------------------------ 638 (986)
T ss_dssp EEEESCHHHHHHHC-----------------------------------G------------------------------
T ss_pred ECCCCCHHHHHHHH-----------------------------------H------------------------------
T ss_conf 26779999998614-----------------------------------8------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 66521111224665567489999999999999971153899999999999999999877244588765446421146889
Q 000512 483 DKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATF 562 (1454)
Q Consensus 483 ~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~gtif~~~~~~~~~~~~~~~~~g~lf 562 (1454)
.. .. + + .+... ..
T Consensus 639 -------~~--~~-~--------------------------------------------~--~l~~~---~~-------- 651 (986)
T 2iw3_A 639 -------AA--KA-Y--------------------------------------------E--ELSNT---DL-------- 651 (986)
T ss_dssp -------GG--GG-S--------------------------------------------S--STTTC---CC--------
T ss_pred -------HH--HH-H--------------------------------------------H--HHHHH---HH--------
T ss_conf -------89--99-9--------------------------------------------8--64454---43--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99999999688999997510146898530577782447998999860199999999999887612677826789999999
Q 000512 563 FAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYAL 642 (1454)
Q Consensus 563 f~~~~~~~~~~~~i~~~i~~~pvf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~rff~~~l~ 642 (1454)
T Consensus 652 -------------------------------------------------------------------------------- 651 (986)
T 2iw3_A 652 -------------------------------------------------------------------------------- 651 (986)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999977113167899999999999999822556922267889999977299899999999861489665
Q 000512 643 LLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWK 722 (1454)
Q Consensus 643 l~l~~~~~~~l~~~ia~~~~~~~iA~~~~~~~~l~~~l~~Gf~i~~~~ip~w~~W~~~isp~~y~~~al~~nef~~~~~~ 722 (1454)
.+.
T Consensus 652 -----------------------------------------------------------------------------~~~ 654 (986)
T 2iw3_A 652 -----------------------------------------------------------------------------EFK 654 (986)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred -----------------------------------------------------------------------------HCC
T ss_conf -----------------------------------------------------------------------------203
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf 44478865417898722497545403689899999999999999999987329888886301001112111112478643
Q 000512 723 KFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQ 802 (1454)
Q Consensus 723 ~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~~~i~f~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1454)
...+ +.
T Consensus 655 ~p~~--------------~~------------------------------------------------------------ 660 (986)
T 2iw3_A 655 FPEP--------------GY------------------------------------------------------------ 660 (986)
T ss_dssp CCCC--------------CC------------------------------------------------------------
T ss_pred CCCC--------------CC------------------------------------------------------------
T ss_conf 5655--------------54------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCEEEEECCHHHHHCCCCCCCEE
Q ss_conf 33457989888888988764464564101234432027776688665778722477040335405302344054578638
Q 000512 803 LSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLV 882 (1454)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 882 (1454)
.. . .. +.....+.++|+++.++. ..+.
T Consensus 661 ------------~~--------------------~-----~~-----~~~~~mL~v~nLs~~Y~g-----------~~~~ 687 (986)
T 2iw3_A 661 ------------LE--------------------G-----VK-----TKQKAIVKVTNMEFQYPG-----------TSKP 687 (986)
T ss_dssp ------------CT--------------------T-----CC-----STTSEEEEEEEEEECCTT-----------CSSC
T ss_pred ------------CC--------------------C-----CC-----CCCCCEEEEEEEEEEECC-----------CCCE
T ss_conf ------------33--------------------4-----56-----678706999846998189-----------8741
Q ss_pred EEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCC----CCCCCH
Q ss_conf 8332077660891999974699974569964708988862899999969027811223078896158988----999989
Q 000512 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH----SPFVTI 958 (1454)
Q Consensus 883 iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~d~~----~~~lTV 958 (1454)
+|+|+|+.+++|+++||+|+||||||||+++|+|... +.+|+|.++|. ..++|++|+..+ ....|+
T Consensus 688 iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~--P~sG~I~~~~~--------~~I~yv~Q~~~~~l~~~~~~t~ 757 (986)
T 2iw3_A 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--PTSGEVYTHEN--------CRIAYIKQHAFAHIESHLDKTP 757 (986)
T ss_dssp SEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC--CSEEEEEECTT--------CCEEEECHHHHHHGGGCTTSCH
T ss_pred EEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCEEEEECCC--------CCEEEECCCHHHHHHCCCCCCH
T ss_conf 3432279982897899989999879999999957988--88608998686--------4257631302433210011479
Q ss_pred HHHHHHHHHHC------------CC----------------------------------------------------CCC
Q ss_conf 99999988720------------89----------------------------------------------------999
Q 000512 959 YESLLFSAWLR------------LS----------------------------------------------------PEV 974 (1454)
Q Consensus 959 ~E~l~f~a~lr------------~~----------------------------------------------------~~~ 974 (1454)
+|.+.+.-... .. ...
T Consensus 758 ~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~l 837 (986)
T 2iw3_A 758 SEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPM 837 (986)
T ss_dssp HHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEEC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99988775045025555433210343555442000112320123444455543122200210002554320000012343
Q ss_pred ----------------------------------CHHHHHHHHHHHHHHCCCCC-C-CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf ----------------------------------98899999999999929965-3-23324688777779989989999
Q 000512 975 ----------------------------------DSETRKMFIDEVMELVELNP-L-RQSLVGLPGVSGLSTEQRKRLTI 1018 (1454)
Q Consensus 975 ----------------------------------~~~~~~~~v~~vl~~l~L~~-~-~~~~vg~~~~~glSgGqrkRlsi 1018 (1454)
.....+..++++++.++|.+ . .+..+ ..||||||||+.|
T Consensus 838 t~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~-----~~LSGGQkQRVaL 912 (986)
T 2iw3_A 838 MSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI-----RGLSGGQKVKLVL 912 (986)
T ss_dssp CGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG-----GGCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCCC-----CCCCHHHHHHHHH
T ss_conf 23443210167776667665544324555430223234799999999976998054448980-----4239999999999
Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECC
Q ss_conf 99985199788993999999999999999999998748998999946853999987362879924969999769
Q 000512 1019 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1454)
Q Consensus 1019 a~~L~~~p~iL~LDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~illl~~gG~~vy~G~ 1092 (1454)
|++|+.+|++|+|||||+|||..+...+++.+++. |.|||+++|++. .+...+|++++|.+ |+++..|+
T Consensus 913 ArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 913 AAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp HHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTCCEEECCBT-TBCCC---
T ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH---CCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 99998399999997986577999999999999974---997999979899-99985899999989-99998687
No 5
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=446.12 Aligned_cols=436 Identities=23% Similarity=0.273 Sum_probs=306.4
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 36313057784891999975999957999999967989999712399---------9969347986-----765229998
Q 000512 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV---------TYNGHDMDEF-----VPQRTAAYI 231 (1454)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V---------~~nG~~~~~~-----~~~~~~~yv 231 (1454)
.+|+|+| .+++||.++|+||||||||||+++|+|.+.|+ +|++ .++|.+.... ..+..++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred CCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0026768-67999999999999997999999996799888---8866753145677618840777787888874446653
Q ss_pred CCCCCCCCC---CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 589988999---99999999568721788414565998999986199999886899999862334477999999999099
Q 000512 232 SQHDNHIGE---MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1454)
Q Consensus 232 ~Q~d~~~~~---lTVrEtl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~did~~~~a~~~~~~~~~~~~d~il~~lgL 308 (1454)
.|.....+. .||.|++..... ...++.+++.+||
T Consensus 112 ~q~~~~~~~~~~~~v~e~~~~~~~-------------------------------------------~~~~~~~l~~lgl 148 (538)
T 1yqt_A 112 PQYVDLIPKAVKGKVIELLKKADE-------------------------------------------TGKLEEVVKALEL 148 (538)
T ss_dssp CSCGGGSGGGCCSBHHHHHHHHCS-------------------------------------------SSCHHHHHHHTTC
T ss_pred HHHHHHCCHHHHCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 223432101211219999743139-------------------------------------------9999999987699
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHH
Q ss_conf 54345433464466777445678999999733985341326998999897999999999987703985999983691149
Q 000512 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (1454)
Q Consensus 309 ~~~~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~ 388 (1454)
++..+..++ .|||||||||.||++|+.+|++|+|||||++||..+..++.+.|+++.. .+.|+ +.+.|...++
T Consensus 149 ~~~~~~~~~-----~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tv-i~vsHd~~~~ 221 (538)
T 1yqt_A 149 ENVLEREIQ-----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSV-LVVEHDLAVL 221 (538)
T ss_dssp TTTTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEE-EEECSCHHHH
T ss_pred CHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEE-EEEECCHHHH
T ss_conf 736609835-----4899999999999998469999999897345798899999999999996-59879-9994788999
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 85139199955973999439667999998379988999995789987018122445431038987657998999999824
Q 000512 389 YDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSF 468 (1454)
Q Consensus 389 ~~~fD~i~lL~~G~ivy~G~~~~~~~~F~~lGf~cp~~~~~aDfl~ev~s~~~~~~~~~~~~~~~~~~~~~e~~~~f~~s 468 (1454)
...+|+|++|.+|...|.- ...+
T Consensus 222 ~~~~dri~vl~~~~~~~~~-----------------------------------------~~~~---------------- 244 (538)
T 1yqt_A 222 DYLSDIIHVVYGEPGVYGI-----------------------------------------FSQP---------------- 244 (538)
T ss_dssp HHHCSEEEEEEEETTTEEE-----------------------------------------ECCC----------------
T ss_pred HHHCCEEEEECCCCCCCCC-----------------------------------------CCCH----------------
T ss_conf 9768899998686324402-----------------------------------------2553----------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 12244787513976665211112246655674899999999999999711538999999999999999998772445887
Q 000512 469 HVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHK 548 (1454)
Q Consensus 469 ~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~gtif~~~~~~~ 548 (1454)
+. ..... .. +. .
T Consensus 245 ----------------------------~~--~~~~~-------------------~~--------------~~--~--- 256 (538)
T 1yqt_A 245 ----------------------------KG--TRNGI-------------------NE--------------FL--R--- 256 (538)
T ss_dssp ----------------------------EE--HHHHH-------------------HH--------------HH--H---
T ss_pred ----------------------------HH--HHHHH-------------------HH--------------HH--H---
T ss_conf ----------------------------55--89999-------------------98--------------76--4---
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 65446421146889999999996889999975101468985305777824479989998601999999999998876126
Q 000512 549 DTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVG 628 (1454)
Q Consensus 549 ~~~~~~~~~~g~lff~~~~~~~~~~~~i~~~i~~~pvf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g 628 (1454)
T Consensus 257 -------------------------------------------------------------------------------- 256 (538)
T 1yqt_A 257 -------------------------------------------------------------------------------- 256 (538)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 77826789999999999999999999999771131678999999999999998225569222678899999772998999
Q 000512 629 YDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQ 708 (1454)
Q Consensus 629 l~~~~~rff~~~l~l~l~~~~~~~l~~~ia~~~~~~~iA~~~~~~~~l~~~l~~Gf~i~~~~ip~w~~W~~~isp~~y~~ 708 (1454)
|+..
T Consensus 257 ------------------------------------------------------~~~~---------------------- 260 (538)
T 1yqt_A 257 ------------------------------------------------------GYLK---------------------- 260 (538)
T ss_dssp ------------------------------------------------------TEET----------------------
T ss_pred ------------------------------------------------------HCCC----------------------
T ss_conf ------------------------------------------------------0230----------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCC
Q ss_conf 99999861489665444788654178987224975454036898999999999999999999873298888863010011
Q 000512 709 NAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEI 788 (1454)
Q Consensus 709 ~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~~~i~f~~~~~l~l~~l~~~~~~~~~~~~~~ 788 (1454)
.. ....... .
T Consensus 261 ------------------~~----------~~~~~~~------------------------------~------------ 270 (538)
T 1yqt_A 261 ------------------DE----------NVRFRPY------------------------------E------------ 270 (538)
T ss_dssp ------------------TT----------TEECSSS------------------------------C------------
T ss_pred ------------------HH----------HHCCCCC------------------------------C------------
T ss_conf ------------------02----------3203444------------------------------5------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCEEEEECC
Q ss_conf 12111112478643334579898888889887644645641012344320277766886657787224770403354053
Q 000512 789 ESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMP 868 (1454)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 868 (1454)
. ....+ . .. . . +.....+..+|+++.++
T Consensus 271 -------~------------------~~~~~------------~---~~-~---~------~~~~~~l~~~~l~~~~~-- 298 (538)
T 1yqt_A 271 -------I------------------KFTKT------------G---ER-V---E------IERETLVTYPRLVKDYG-- 298 (538)
T ss_dssp -------C------------------CCCCS------------S---GG-G---S------SCCCEEEEECCEEEEET--
T ss_pred -------C------------------CCCCC------------C---CC-C---C------CCCCEEEEEEEEEEEEC--
T ss_conf -------5------------------54557------------7---65-5---6------67871899930799989--
Q ss_pred HHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf 02344054578638833207766089199997469997456996470898886289999996902781122307889615
Q 000512 869 EEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQ 948 (1454)
Q Consensus 869 ~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q 948 (1454)
. ..|+++++.+++||++||+|+||||||||+++|+|... +.+|+|.+ ...++|++|
T Consensus 299 -----------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----------~~~i~~v~Q 354 (538)
T 1yqt_A 299 -----------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----------DLTVAYKPQ 354 (538)
T ss_dssp -----------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC----------CCCEEEECS
T ss_pred -----------C-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCEEEEE----------CCEEEEEEC
T ss_conf -----------9-89990744128998999988999999999999967998--99718998----------746999826
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCE
Q ss_conf 89889999899999998872089999988999999999999299653233246887777799899899999998519978
Q 000512 949 NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028 (1454)
Q Consensus 949 ~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~i 1028 (1454)
+....+.+||.|.+......... ..+.++++++.+++.+..+..+ ..||||||||+.||++|+.+|++
T Consensus 355 ~~~~~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~l 422 (538)
T 1yqt_A 355 YIKADYEGTVYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADI 422 (538)
T ss_dssp SCCCCCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSE
T ss_pred CCCCCCCCCHHHHHHHHHCCCCC-------HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCE
T ss_conf 77678888599999864036887-------8999999999749915653994-----44899999999999999728998
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEECCCCC
Q ss_conf 899399999999999999999999874-8998999946853999987362879924-969999769987
Q 000512 1029 IFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPLGR 1095 (1454)
Q Consensus 1029 L~LDEPTsGLD~~~a~~i~~~l~~~~~-~g~Tvi~t~Hqps~~i~~~fD~illl~~-gG~~vy~G~~g~ 1095 (1454)
|+|||||+|||..+...+++.|+++++ .|.|||+++|+.. ++...+|++++|.. .|+.+..|++.+
T Consensus 423 LlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 423 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHH
T ss_conf 99939801089999999999999999867989999939899-999968999999088315740489899
No 6
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=440.00 Aligned_cols=214 Identities=22% Similarity=0.307 Sum_probs=150.0
Q ss_pred CCEEEECCEEEEECCEEEEEECCCCCCHHHHH---------------------HHHHCCCCCCCC----CEEEEEECCCC
Q ss_conf 42363130577848919999759999579999---------------------999679899997----12399996934
Q 000512 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLL---------------------LALAGKLDPTLK----VSGTVTYNGHD 218 (1454)
Q Consensus 164 ~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL---------------------~~LaG~~~~~~~----~~G~V~~nG~~ 218 (1454)
..++|+|||+.+++|++++|+||||||||||+ +.+.|...++.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCH
T ss_conf 76402343899879989999899999988871510123211100011002445553034567756321356415744720
Q ss_pred CCCCCCCCEEEEECCCCC-------------------CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 798676522999858998-------------------8999999999995687217884145659989999861999998
Q 000512 219 MDEFVPQRTAAYISQHDN-------------------HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279 (1454)
Q Consensus 219 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTVrEtl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~ 279 (1454)
.... +++.++|++|... .++.+||+|++.+....... ..+...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~------ 171 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI------ 171 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred HHCC-CHHCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC-----------HHHHHH------
T ss_conf 1025-5000046511256677777531111234443334578599999975203643-----------145677------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCEEECCCCCCCH
Q ss_conf 86899999862334477999999999099543-45433464466777445678999999733985--3413269989998
Q 000512 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDS 356 (1454)
Q Consensus 280 did~~~~a~~~~~~~~~~~~d~il~~lgL~~~-~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~--il~lDEptsgLDs 356 (1454)
.+... .+..... .+++.+||++. .|..++ .|||||||||.||++|+.+|+ +|+|||||+|||+
T Consensus 172 -~~~~~-------~~~~~~~-~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 172 -ARLIL-------REIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHHH-HHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -HHHHH-------HHHHHHH-HHHHHCCCCHHHHCCCCC-----CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf -88889-------9999999-899975984344149700-----189999999999999962899878999798568999
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEE------CCCEEEEECCHHHH
Q ss_conf 979999999999877039859999836911498513919995------59739994396679
Q 000512 357 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELV 412 (1454)
Q Consensus 357 ~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~lL------~~G~ivy~G~~~~~ 412 (1454)
.+..++.+.|+++.. .+.|+|+ ++|.... ...+|++++| .+|++++.|+.+++
T Consensus 238 ~~~~~l~~~l~~l~~-~g~tvi~-vtHd~~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-LGNTLIV-VEHDEDT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp GGHHHHHHHHHHHHH-TTCEEEE-ECCCHHH-HHHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHH-CCCEEEE-EECCHHH-HHHCCEEEEECCCCCCCCCEEEEECCHHHH
T ss_conf 999999999999997-4998999-9578799-962998999446665669889974089998
No 7
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=432.11 Aligned_cols=216 Identities=20% Similarity=0.239 Sum_probs=167.9
Q ss_pred EEEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 24770403354053023440545786388332077660891999974699974569964708988862899999969027
Q 000512 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1454)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~ 934 (1454)
.+.+++++..+. . ..|+.+++.+++||+++|+|+||||||||+++|+|... +.+|+|.+++.
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~-- 330 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQ-- 330 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCC--
T ss_pred EEEECCEEEEEC-------------C-EEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCE--
T ss_conf 699823399979-------------8-89982664688998999999999989999999957888--99818999984--
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 81122307889615898899998999999988720899999889999999999992996532332468877777998998
Q 000512 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1454)
Q Consensus 935 ~~~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrk 1014 (1454)
.++|++|+.......||+|.+.+...... .. ....++++++.++|.+..+..+ ..|||||||
T Consensus 331 -------~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 331 -------ILSYKPQRIFPNYDGTVQQYLENASKDAL--ST----SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp -------CEEEECSSCCCCCSSBHHHHHHHHCSSTT--CT----TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred -------EEEEECHHCCCCCCCCHHHHHHHHHHHCC--CH----HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHH
T ss_conf -------56761400034547779999987553112--11----6999999998759977862893-----227999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEECC-CEEEEECC
Q ss_conf 99999998519978899399999999999999999999874-89989999468539999873628799249-69999769
Q 000512 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG-GQEIYVGP 1092 (1454)
Q Consensus 1015 Rlsia~~L~~~p~iL~LDEPTsGLD~~~a~~i~~~l~~~~~-~g~Tvi~t~Hqps~~i~~~fD~illl~~g-G~~vy~G~ 1092 (1454)
|+.||++|+.+|++|+|||||+|||..+...+++.++++++ .|.|||+++|+.. ++...+|++++|..+ |.....++
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCCCC
T ss_conf 9999999970899899969865799999999999999999738989999958899-999968999999698510116798
Q ss_pred CCCCCHHHHHHHHHC
Q ss_conf 987501689998719
Q 000512 1093 LGRHSCHLISYFEAI 1107 (1454)
Q Consensus 1093 ~g~~~~~~~~yF~~~ 1107 (1454)
...-...+..|+..+
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 477887888887416
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=426.00 Aligned_cols=201 Identities=17% Similarity=0.171 Sum_probs=155.9
Q ss_pred EEEECCEEEEECC-----EEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 8833207766089-----19999746999745699647089888628999999690278112230788961589889999
Q 000512 882 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFV 956 (1454)
Q Consensus 882 ~iL~~vs~~i~pG-----~~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~d~~~~~l 956 (1454)
..++++++.+++| |+++|+|+||||||||+++|+|.... .+|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC--CCCCC------CC----CCCEEEECCCCCCCCCC
T ss_conf 44686589970685146518999888898699999999657878--78858------66----77379860544445786
Q ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 89999999887208999998899999999999929965323324688777779989989999999851997889939999
Q 000512 957 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036 (1454)
Q Consensus 957 TV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~iL~LDEPTs 1036 (1454)
||+|.+.. ..+.. .. ....++++++.++|.+..+..+ ..||||||||+.||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~--~~~~~--~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFK--KIRGQ--FL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHH--HCSST--TT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHH--HHHCC--CC---CHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 69999987--75303--24---6899999998749834651993-----2389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEECCCCCCCHHHHHHHHHC
Q ss_conf 999999999999999987-48998999946853999987362879924-969999769987501689998719
Q 000512 1037 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPLGRHSCHLISYFEAI 1107 (1454)
Q Consensus 1037 GLD~~~a~~i~~~l~~~~-~~g~Tvi~t~Hqps~~i~~~fD~illl~~-gG~~vy~G~~g~~~~~~~~yF~~~ 1107 (1454)
|||..+...+++.++++. +.|.|||+++|+.. ++...+|++++|.. .|+.+..|++.+--.....+.+.+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 899999999999999999757998999968899-999868999999589873774298699863046899754
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=361.60 Aligned_cols=214 Identities=28% Similarity=0.387 Sum_probs=180.0
Q ss_pred CCEEEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 72247704033540530234405457863883320776608919999746999745699647089888628999999690
Q 000512 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1454)
Q Consensus 853 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~ 932 (1454)
...++|+|++++++..+ ...+|+|+|+.++||+++||+|+||||||||+++|.|... +.+|+|.+||.
T Consensus 413 ~g~I~~~nvsF~Y~~~~----------~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~ 480 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSRP----------DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGV 480 (1321)
T ss_dssp CCCEEEEEEEECCSSST----------TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCCEEEEEEEEECCCCC----------CCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCC--CCCCCCCCCCC
T ss_conf 87679998554079999----------8743333188622882789980589857788887545651--64486157996
Q ss_pred CCCC---CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCC
Q ss_conf 2781---122307889615898899998999999988720899999889999999999992996-------532332468
Q 000512 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 1002 (1454)
Q Consensus 933 ~~~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-------~~~~~~vg~ 1002 (1454)
+... ..+++.++||+|+..++. -||+|++.|.. ++.+. +.+.++++..++. +-.++.+|.
T Consensus 481 ~i~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~-----~~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe 550 (1321)
T 4f4c_A 481 DVRDINLEFLRKNVAVVSQEPALFN-CTIEENISLGK-----EGITR----EEMVAACKMANAEKFIKTLPNGYNTLVGD 550 (1321)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHTTC-----TTCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESS
T ss_pred CCHHCCHHHHHHCCCCCCCCCEEEC-CCHHHHHHHHC-----CCCHH----HHHHHHHHHCCCHHHHHCCCCCCCCEECC
T ss_conf 5011259998504666587533207-86167886415-----52209----99999998756546887088888607558
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEE
Q ss_conf 87777799899899999998519978899399999999999999999999874899899994685399998736287992
Q 000512 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1454)
Q Consensus 1003 ~~~~glSgGqrkRlsia~~L~~~p~iL~LDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~illl~ 1082 (1454)
.|. .||||||||++|||+++++|+|++||||||+||+.++..+++.++++. +|+|+|+++|+++ ....+|++++|+
T Consensus 551 ~G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~ 626 (1321)
T 4f4c_A 551 RGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCK 626 (1321)
T ss_dssp SSC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEE
T ss_pred CCC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHH--HHHHCCEEEEEE
T ss_conf 988-777778799999998725999899845544688789999999999984-7988999736387--898689899963
Q ss_pred CCCEEEEECCC
Q ss_conf 49699997699
Q 000512 1083 RGGQEIYVGPL 1093 (1454)
Q Consensus 1083 ~gG~~vy~G~~ 1093 (1454)
+ |+++..|+.
T Consensus 627 ~-G~ive~Gth 636 (1321)
T 4f4c_A 627 N-GQVVEVGDH 636 (1321)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEECCCCH
T ss_conf 9-965136899
No 10
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=1.00 E-value=1 Score=330.41 Aligned_cols=213 Identities=24% Similarity=0.393 Sum_probs=174.4
Q ss_pred CCEEEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 72247704033540530234405457863883320776608919999746999745699647089888628999999690
Q 000512 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1454)
Q Consensus 853 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~ 932 (1454)
+..++++|++++++. +...+|+|+|+.+++|+++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 337 ~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 403 (578)
T 4a82_A 337 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGH 403 (578)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTE
T ss_pred CCEEEEEEEEEECCC-----------CCCCCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCE
T ss_conf 880799999997589-----------99741343379987999999989999859999999846788--99967999999
Q ss_pred CCCC---CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCC
Q ss_conf 2781---12230788961589889999899999998872089999988999999999999299653-------2332468
Q 000512 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGL 1002 (1454)
Q Consensus 933 ~~~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~ 1002 (1454)
+... ..+++.++||+|+...++. ||+|++.+.. ++.++ +.++++++..++.+. .++.+|.
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~ 473 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR-----PTATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE 473 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC-----SSCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EHHHCCHHHHHHHEEEEECCCCCCCC-CHHHHHHCCC-----CCCCH----HHHHHHHHHHCCHHHHHHCCCHHHHHHCC
T ss_conf 84427899996006899289834764-5999985279-----99889----99999998809599997573301025306
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEE
Q ss_conf 87777799899899999998519978899399999999999999999999874899899994685399998736287992
Q 000512 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1454)
Q Consensus 1003 ~~~~glSgGqrkRlsia~~L~~~p~iL~LDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~illl~ 1082 (1454)
.+ ..||||||||++||++|+.+|++++||||||+||+.++..+++.++++. +++|+|+++|+++. .+.+|++++|+
T Consensus 474 ~g-~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~ 549 (578)
T 4a82_A 474 RG-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIE 549 (578)
T ss_dssp GG-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEE
T ss_pred CC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHH--HHCCCEEEEEE
T ss_conf 88-9679999999999999974999999978654579999999999999980-89979998317899--97199899998
Q ss_pred CCCEEEEECCC
Q ss_conf 49699997699
Q 000512 1083 RGGQEIYVGPL 1093 (1454)
Q Consensus 1083 ~gG~~vy~G~~ 1093 (1454)
+ |+++..|+.
T Consensus 550 ~-G~i~~~g~~ 559 (578)
T 4a82_A 550 N-GHIVETGTH 559 (578)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
T ss_conf 9-989998889
Done!