BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000513
(1453 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BC9|A Chain A, Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average
Structure
Length = 200
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 112/195 (57%), Gaps = 5/195 (2%)
Query: 550 MKYIKR--KLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGD 607
MK ++R ++ +G FN DPKKG++FL LL + + +A F GL+K IGD
Sbjct: 1 MKNMQRNKQVAMGRKKFNMDPKKGIQFLIENDLLKNTC--EDIAQFLYKGEGLNKTAIGD 58
Query: 608 FLGNHDEFCVQVLHEFAGTFNFRGMNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYE 667
+LG DEF +QVLH F F +NL ALR FL +FRLPGE+QKI R++EAFA+RY +
Sbjct: 59 YLGERDEFNIQVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQ 118
Query: 668 QSSDILSDKDAAXXXXXXXXXXNTDQHNAQVKKKMTEEDFIRNNRSINGGKDLPREYLAE 727
++ + D NT HN VK K T E FI NR IN G DLP E L
Sbjct: 119 CNNGVFQSTDTCYVLSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRN 178
Query: 728 LYHSICENEILMIPE 742
LY SI +NE IPE
Sbjct: 179 LYESI-KNEPFKIPE 192
>pdb|4A4P|A Chain A, Crystal Structure Of The Sec7 Domain From Human Cytohesin1
pdb|4A4P|B Chain B, Crystal Structure Of The Sec7 Domain From Human Cytohesin1
Length = 192
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 108/188 (57%), Gaps = 3/188 (1%)
Query: 555 RKLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGDFLGNHDE 614
+++ +G FN DPKKG++FL LL + + +A F GL+K IGD+LG DE
Sbjct: 8 KQVAMGRKKFNMDPKKGIQFLIENDLLKNTC--EDIAQFLYKGEGLNKTAIGDYLGERDE 65
Query: 615 FCVQVLHEFAGTFNFRGMNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYEQSSDILS 674
F +QVLH F F +NL ALR FL +FRLPGE+QKI R++EAFA+RY + ++ +
Sbjct: 66 FNIQVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQ 125
Query: 675 DKDAAXXXXXXXXXXNTDQHNAQVKKKMTEEDFIRNNRSINGGKDLPREYLAELYHSICE 734
D NT HN VK K T E FI NR IN G DLP E L LY SI +
Sbjct: 126 STDTCYVLSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESI-K 184
Query: 735 NEILMIPE 742
NE IPE
Sbjct: 185 NEPFKIPE 192
>pdb|3LTL|A Chain A, Crystal Structure Of Human Big1 Sec7 Domain
pdb|3LTL|B Chain B, Crystal Structure Of Human Big1 Sec7 Domain
Length = 211
Score = 147 bits (371), Expect = 4e-35, Method: Composition-based stats.
Identities = 76/192 (39%), Positives = 112/192 (58%), Gaps = 4/192 (2%)
Query: 550 MKYIKRKLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGDFL 609
+K K + G D FN+ PK+G+++LQ +L P+ +A F LD +G+FL
Sbjct: 15 LKQQKEIIEQGIDLFNKKPKRGIQYLQEQGML--GTTPEDIAQFLHQEERLDSTQVGEFL 72
Query: 610 GNHDEFCVQVLHEFAGTFNFRGMNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYE-- 667
G++D+F +V++ + +F G + +ALR+FL FRLPGE+QKI R++E FA RY E
Sbjct: 73 GDNDKFNKEVMYAYVDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECN 132
Query: 668 QSSDILSDKDAAXXXXXXXXXXNTDQHNAQVKKKMTEEDFIRNNRSINGGKDLPREYLAE 727
Q + + D A TD H+ QVK KMT+E +I+ NR IN KDLP EYL+
Sbjct: 133 QGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGINDSKDLPEEYLSA 192
Query: 728 LYHSICENEILM 739
+Y+ I +I M
Sbjct: 193 IYNEIAGKKISM 204
>pdb|1R8M|E Chain E, Sec7 Domain Of The Arf Exchange Factor Arno With Brefeldin
A- Sensitizing Mutations
pdb|1S9D|E Chain E, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
Length = 203
Score = 147 bits (370), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/188 (44%), Positives = 105/188 (55%), Gaps = 3/188 (1%)
Query: 555 RKLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGDFLGNHDE 614
RK+ +G FN DPKKG++FL LL + P+ +A F GL+K IGD+LG +E
Sbjct: 14 RKMAMGRKKFNMDPKKGIQFLVENELLQNT--PEEIARFLYKGEGLNKTAIGDYLGEREE 71
Query: 615 FCVQVLHEFAGTFNFRGMNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYEQSSDILS 674
+ VLH F F +NL ALR FL +FRLPGE+QKI R++EAFA+RY + +
Sbjct: 72 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLXNPGVFQ 131
Query: 675 DKDAAXXXXXXXXXXNTDQHNAQVKKKMTEEDFIRNNRSINGGKDLPREYLAELYHSICE 734
D NTD HN V+ KM E F+ NR IN G DLP E L LY SI
Sbjct: 132 STDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSI-R 190
Query: 735 NEILMIPE 742
NE IPE
Sbjct: 191 NEPFKIPE 198
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 147 bits (370), Expect = 6e-35, Method: Composition-based stats.
Identities = 84/187 (44%), Positives = 103/187 (55%), Gaps = 3/187 (1%)
Query: 556 KLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGDFLGNHDEF 615
++ G FN DPKKG++FL LL + P+ VA F GL+K +IGD+LG D+F
Sbjct: 17 QIAXGRKKFNXDPKKGIQFLIENDLL--QSSPEDVAQFLYKGEGLNKTVIGDYLGERDDF 74
Query: 616 CVQVLHEFAGTFNFRGMNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYEQSSDILSD 675
++VL F F +NL ALR FL +FRLPGE+QKI R EAFA RY + +
Sbjct: 75 NIKVLQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRXXEAFASRYCLCNPGVFQS 134
Query: 676 KDAAXXXXXXXXXXNTDQHNAQVKKKMTEEDFIRNNRSINGGKDLPREYLAELYHSICEN 735
D NT HN V+ K T E FI NR IN G DLP E L LY SI +N
Sbjct: 135 TDTCYVLSFAIIXLNTSLHNHNVRDKPTAERFITXNRGINEGGDLPEELLRNLYESI-KN 193
Query: 736 EILMIPE 742
E IPE
Sbjct: 194 EPFKIPE 200
>pdb|1R8Q|E Chain E, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|F Chain F, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
Length = 203
Score = 146 bits (368), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 84/188 (44%), Positives = 105/188 (55%), Gaps = 3/188 (1%)
Query: 555 RKLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGDFLGNHDE 614
RK+ +G FN DPKKG++FL LL + P+ +A F GL+K IGD+LG +E
Sbjct: 14 RKMAMGRKKFNMDPKKGIQFLVENELLQNT--PEEIARFLYKGEGLNKTAIGDYLGEREE 71
Query: 615 FCVQVLHEFAGTFNFRGMNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYEQSSDILS 674
+ VLH F F +NL ALR FL +FRLPGE+QKI R++EAFA+RY + +
Sbjct: 72 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 131
Query: 675 DKDAAXXXXXXXXXXNTDQHNAQVKKKMTEEDFIRNNRSINGGKDLPREYLAELYHSICE 734
D NTD HN V+ KM E F+ NR IN G DLP E L LY SI
Sbjct: 132 STDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSI-R 190
Query: 735 NEILMIPE 742
NE IPE
Sbjct: 191 NEPFKIPE 198
>pdb|1R8S|E Chain E, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
Length = 203
Score = 144 bits (364), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 105/188 (55%), Gaps = 3/188 (1%)
Query: 555 RKLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGDFLGNHDE 614
RK+ +G FN DPKKG++FL LL + P+ +A F GL+K IGD+LG +E
Sbjct: 14 RKMAMGRKKFNMDPKKGIQFLVENELLQNT--PEEIARFLYKGEGLNKTAIGDYLGEREE 71
Query: 615 FCVQVLHEFAGTFNFRGMNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYEQSSDILS 674
+ VLH F F +NL ALR FL +FRLPG++QKI R++EAFA+RY + +
Sbjct: 72 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQ 131
Query: 675 DKDAAXXXXXXXXXXNTDQHNAQVKKKMTEEDFIRNNRSINGGKDLPREYLAELYHSICE 734
D NTD HN V+ KM E F+ NR IN G DLP E L LY SI
Sbjct: 132 STDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSI-R 190
Query: 735 NEILMIPE 742
NE IPE
Sbjct: 191 NEPFKIPE 198
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 143 bits (360), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 105/187 (56%), Gaps = 3/187 (1%)
Query: 556 KLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGDFLGNHDEF 615
++ +G FN DPKKG++FL LL + P+ VA F GL+K +IGD+LG D+F
Sbjct: 17 QIAMGRKKFNMDPKKGIQFLIENDLL--QSSPEDVAQFLYKGEGLNKTVIGDYLGERDDF 74
Query: 616 CVQVLHEFAGTFNFRGMNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYEQSSDILSD 675
++VL F F +NL ALR FL +FRLPGE+QKI R++EAFA RY + +
Sbjct: 75 NIKVLQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQS 134
Query: 676 KDAAXXXXXXXXXXNTDQHNAQVKKKMTEEDFIRNNRSINGGKDLPREYLAELYHSICEN 735
D NT HN V+ K T E FI NR IN G DLP E L LY SI +N
Sbjct: 135 TDTCYVLSFAIIMLNTSLHNHNVRDKPTAERFITMNRGINEGGDLPEELLRNLYESI-KN 193
Query: 736 EILMIPE 742
E IPE
Sbjct: 194 EPFKIPE 200
>pdb|1PBV|A Chain A, Sec7 Domain Of The Exchange Factor Arno
Length = 195
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 102/187 (54%), Gaps = 3/187 (1%)
Query: 555 RKLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGDFLGNHDE 614
RK+ +G FN DPKKG++FL LL + P+ +A F GL+K IGD+LG +E
Sbjct: 12 RKMAMGRKKFNMDPKKGIQFLVENELLQNT--PEEIARFLYKGEGLNKTAIGDYLGEREE 69
Query: 615 FCVQVLHEFAGTFNFRGMNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYEQSSDILS 674
+ VLH F F +NL ALR FL +FRLPGE+QKI R++EAFA+RY + +
Sbjct: 70 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 129
Query: 675 DKDAAXXXXXXXXXXNTDQHNAQVKKKMTEEDFIRNNRSINGGKDLPREYLAELYHSICE 734
D NT HN V+ K E F+ NR IN G DLP E L LY SI
Sbjct: 130 STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSI-R 188
Query: 735 NEILMIP 741
NE IP
Sbjct: 189 NEPFKIP 195
>pdb|3L8N|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited
Guanine Nucleotide-Exchange Protein 2
(Brefeldina-Inhibited Gep 2) From Homo Sapiens (Human).
Northeast Structural Genomics Consortium Target Id
Hr5562a
pdb|3SWV|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited
Guanine Nucleotide-Exchange Protein 2 (Brefeldin
A-Inhibited Gep 2) From Homo Sapiens (Human), Northeast
Structural Genomics Consortium Target Id Hr5562a
Length = 202
Score = 127 bits (318), Expect = 5e-29, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 95/175 (54%), Gaps = 4/175 (2%)
Query: 560 GADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGDFLGNHDEFCVQV 619
G + FN+ PK+G++FLQ L + + +A F LD +GDFLG+ F +V
Sbjct: 16 GIELFNKKPKRGIQFLQEQGXLGTSV--EDIAQFLHQEERLDSTQVGDFLGDSARFNKEV 73
Query: 620 LHEFAGTFNFRGMNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYE--QSSDILSDKD 677
+ + +F +ALR FL FRLPGE+QKI R+ E FA RY E Q + + D
Sbjct: 74 XYAYVDQLDFCEKEFVSALRTFLEGFRLPGEAQKIDRLXEKFAARYIECNQGQTLFASAD 133
Query: 678 AAXXXXXXXXXXNTDQHNAQVKKKMTEEDFIRNNRSINGGKDLPREYLAELYHSI 732
A TD H+ QVK K T+E +I+ NR IN KDLP EYL+ +Y I
Sbjct: 134 TAYVLAYSIIXLTTDLHSPQVKNKXTKEQYIKXNRGINDSKDLPEEYLSSIYEEI 188
>pdb|1XSZ|A Chain A, The Structure Of Ralf
pdb|1XSZ|B Chain B, The Structure Of Ralf
Length = 356
Score = 109 bits (273), Expect = 9e-24, Method: Composition-based stats.
Identities = 64/176 (36%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 564 FNRDPKKGL----EFLQGMHLLPDKLDPQSVALFF-RYTVGLDKNLIGDFLGNHDEFCVQ 618
FN PK G+ E + + P+ + +A FF + LD +GD+L + + Q
Sbjct: 18 FNAKPKNGINKIKEICEQYKISPN----EEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQ 73
Query: 619 VLHEFAGTFNFRGMNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYEQSSDILSDKDA 678
VL F NF G + LR FL TF+LPGE+QKI R++++F+ Y++Q+ D++S+ DA
Sbjct: 74 VLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADA 133
Query: 679 AXXXXXXXXXXNTDQHNAQV--KKKMTEEDFIRNNRSINGGKDLPREYLAELYHSI 732
A NTD HN + K KMT + RN R N G D ++L ELY I
Sbjct: 134 AYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKRNLRGGNNGGDFDAKFLEELYSEI 189
>pdb|1RE0|B Chain B, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
Length = 221
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 104/215 (48%), Gaps = 28/215 (13%)
Query: 554 KRKLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGDFLGNHD 613
K + ++ + FN KKG++ L + + + F L+K IG L D
Sbjct: 9 KTEFILCVETFNEKAKKGIQMLIEKGFIDSDSNRDIASFLFLNNGRLNKKTIGLLLC--D 66
Query: 614 EFCVQVLHEFAGTFNFRGMNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYY-EQSSD- 671
+L EF F+F+G+ +D A+R+ L FRLPGESQ+I+R++EAF+ +Y +QS+D
Sbjct: 67 PKKTSLLKEFIDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQSNDK 126
Query: 672 -----------------------ILSDKDAAXXXXXXXXXXNTDQHNAQVKKKMTEEDFI 708
+ D D+ NTD HN QVK MT +D+
Sbjct: 127 VELEDKKAGKNGSESMTEDDIIHVQPDADSVFVLSYSIIMLNTDSHNPQVKDHMTFDDYS 186
Query: 709 RNNRSINGGKDLPREYLAELYHSICENEILMIPEQ 743
N R GKD PR YL ++Y SI EI+M PE+
Sbjct: 187 NNLRGCYNGKDFPRWYLHKIYTSIKVKEIVM-PEE 220
>pdb|1XT0|B Chain B, The Structure Of N-Terminal Sec7 Domain Of Ralf
Length = 203
Score = 105 bits (262), Expect = 2e-22, Method: Composition-based stats.
Identities = 64/176 (36%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 564 FNRDPKKGL----EFLQGMHLLPDKLDPQSVALFF-RYTVGLDKNLIGDFLGNHDEFCVQ 618
FN PK G+ E + + P+ + +A FF + LD +GD+L + + Q
Sbjct: 18 FNAKPKNGINKIKEICEQYKISPN----EEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQ 73
Query: 619 VLHEFAGTFNFRGMNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYEQSSDILSDKDA 678
VL F NF G + LR FL TF+LPGE+QKI R++++F+ Y++Q+ D++S+ DA
Sbjct: 74 VLKAFTSQXNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADA 133
Query: 679 AXXXXXXXXXXNTDQHNAQV--KKKMTEEDFIRNNRSINGGKDLPREYLAELYHSI 732
A NTD HN + K K T + RN R N G D ++L ELY I
Sbjct: 134 AYLLAFQTIXLNTDLHNPSIPEKNKXTVDGLKRNLRGGNNGGDFDAKFLEELYSEI 189
>pdb|1KU1|A Chain A, Crystal Structure Of The Sec7 Domain Of Yeast Gea2
pdb|1KU1|B Chain B, Crystal Structure Of The Sec7 Domain Of Yeast Gea2
Length = 230
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 102/209 (48%), Gaps = 18/209 (8%)
Query: 554 KRKLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGDFLGNHD 613
K + + + FN PKKG+ L + D F ++K IG L + D
Sbjct: 24 KTEFIECTNAFNEKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPD 83
Query: 614 EFCVQVLHEFAGTFNFRGMNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYEQS---- 669
+ V +L+E+ F+F G+ +D A+R+ L FRLPGESQ+I+R++EAF+ Y E
Sbjct: 84 K--VSLLNEYIRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDP 141
Query: 670 -----------SDILSDKDAAXXXXXXXXXXNTDQHNAQVKKKMTEEDFIRNNRSINGGK 718
S + D D+ NTD HN QVK+ M+ ED+ N + K
Sbjct: 142 SKISDNAEDDISTVQPDADSVFILSYSIIMLNTDLHNPQVKEHMSFEDYSGNLKGCCNHK 201
Query: 719 DLPREYLAELYHSICENEILMIPEQGAGS 747
D P YL +Y SI + EI+M PE+ G+
Sbjct: 202 DFPFWYLDRVYCSIRDKEIVM-PEEHHGN 229
>pdb|1CJC|A Chain A, Structure Of Adrenodoxin Reductase Of Mitochondrial P450
Systems
pdb|1E1L|A Chain A, Structure Of Adrenodoxin Reductase In Complex With Nadp
Obtained By Cocrystallisation
pdb|1E1K|A Chain A, Adrenodoxin Reductase In Complex With Nadp+ Obtained By A
Soaking Experiment
pdb|1E1M|A Chain A, Adrenodoxin Reductase In Complex With Nadph Obtained By A
Soaking Experiment
pdb|1E1N|A Chain A, Structure Of Adrenodoxin Reductase At 2.4 Angstrom In
Crystal Form A''
pdb|1E6E|A Chain A, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
pdb|1E6E|C Chain C, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
Length = 460
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 26/125 (20%)
Query: 717 GKDLPREYLAELYHSIC------ENEILMIPEQGAGSPVMTSSR----WINVLHKSREAT 766
G+D+ + L + YH++ +++ L IP G P + S+R W N L ++RE
Sbjct: 83 GRDVTVQELQDAYHAVVLSYGAEDHQALDIP--GEELPGVFSARAFVGWYNGLPENRELA 140
Query: 767 PFIVCDSRALLDH-----DMFIILSGPTVAAMSVIFDQVEREDVLQRCVDGFLAVAKLST 821
P + CD+ +L D+ IL P D +E+ D+ + + G L +++ T
Sbjct: 141 PDLSCDTAVILGQGNVALDVARILLTPP--------DHLEKTDITEAAL-GALRQSRVKT 191
Query: 822 FYHFG 826
+ G
Sbjct: 192 VWIVG 196
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 31.2 bits (69), Expect = 4.7, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 15/149 (10%)
Query: 717 GKDLPREYLAELYHSICENEILMIPEQGAGSPVMTSSRWINV----LHKSREATPFIVCD 772
G +P+ LAE + I++ P++GA T+S+ +N L K+R + I
Sbjct: 140 GDAVPK--LAEYVKDKLNDPIVLAPDKGALEFAKTASKILNAEYDYLEKTRLSPTEIQIA 197
Query: 773 SRAL--LDHDMF----IILSGPTVAAMSVIFDQVEREDVLQRCVDGFLAVAKLSTFYHFG 826
+ L D D+F II +G T+A + + + ++ CV L L+ Y G
Sbjct: 198 PKTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQGAKKIIAACVHPVLIGDALNKLYSAG 257
Query: 827 DILDDLVVSVCKFTTLLTPLSVEEAVLAL 855
+ VV + + ++ +SV E ++ L
Sbjct: 258 ---VEEVVGTDTYLSEVSKVSVAEVIVDL 283
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,800,099
Number of Sequences: 62578
Number of extensions: 1522328
Number of successful extensions: 3265
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3231
Number of HSP's gapped (non-prelim): 20
length of query: 1453
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1342
effective length of database: 8,027,179
effective search space: 10772474218
effective search space used: 10772474218
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)