Query 000513
Match_columns 1453
No_of_seqs 352 out of 1107
Neff 7.2
Searched_HMMs 46136
Date Mon Apr 1 17:30:10 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0928 Pattern-formation prot 100.0 2E-239 3E-244 2190.6 109.5 1356 26-1437 2-1385(1386)
2 PLN03076 ARF guanine nucleotid 100.0 1E-176 3E-181 1742.6 121.0 1266 89-1415 81-1517(1780)
3 KOG0929 Guanine nucleotide exc 100.0 3E-131 6E-136 1254.8 73.9 1212 86-1413 37-1324(1514)
4 COG5307 SEC7 domain proteins [ 100.0 9.9E-67 2.1E-71 662.3 38.6 836 352-1296 31-937 (1024)
5 KOG1848 Uncharacterized conser 100.0 4.4E-59 9.5E-64 576.2 56.5 1045 31-1413 9-1182(1610)
6 PF01369 Sec7: Sec7 domain; I 100.0 1.2E-49 2.7E-54 431.7 19.1 187 551-737 2-190 (190)
7 KOG0930 Guanine nucleotide exc 100.0 4E-50 8.8E-55 425.4 14.8 204 551-756 59-266 (395)
8 cd00171 Sec7 Sec7 domain; Doma 100.0 2.3E-49 5.1E-54 426.1 20.3 183 554-737 2-185 (185)
9 smart00222 Sec7 Sec7 domain. D 100.0 1.4E-48 3E-53 421.6 20.7 184 553-737 2-187 (187)
10 KOG0931 Predicted guanine nucl 100.0 4E-47 8.7E-52 425.1 14.0 189 553-743 197-391 (627)
11 PF12783 Sec7_N: Guanine nucle 100.0 5.1E-29 1.1E-33 266.6 17.3 164 303-469 2-168 (168)
12 KOG0932 Guanine nucleotide exc 100.0 5.6E-29 1.2E-33 285.7 12.8 152 587-738 307-458 (774)
13 PF09324 DUF1981: Domain of un 98.8 5.8E-09 1.3E-13 98.6 5.3 72 1088-1163 13-86 (86)
14 KOG1846 Uncharacterized conser 98.6 2.5E-05 5.4E-10 95.8 29.5 348 977-1332 844-1284(1777)
15 PLN03076 ARF guanine nucleotid 92.9 42 0.00092 48.6 30.1 121 1232-1376 1130-1251(1780)
16 KOG2171 Karyopherin (importin) 85.8 1.1E+02 0.0023 41.9 23.5 260 94-449 159-420 (1075)
17 PF12348 CLASP_N: CLASP N term 82.5 5.4 0.00012 44.9 9.2 105 340-450 22-126 (228)
18 PF02985 HEAT: HEAT repeat; I 81.1 2.8 6.1E-05 31.6 4.2 29 1240-1268 1-29 (31)
19 PF12348 CLASP_N: CLASP N term 79.6 40 0.00087 37.8 14.9 189 108-407 19-211 (228)
20 PTZ00429 beta-adaptin; Provisi 76.7 2.8E+02 0.006 37.3 30.5 149 306-483 214-364 (746)
21 PF11864 DUF3384: Domain of un 76.3 1.8E+02 0.0039 36.7 20.7 137 990-1146 207-352 (464)
22 KOG1241 Karyopherin (importin) 76.2 2.2E+02 0.0047 37.4 20.5 115 1134-1268 125-246 (859)
23 KOG1848 Uncharacterized conser 75.8 3.5E+02 0.0076 38.0 24.6 38 1232-1269 1096-1133(1610)
24 PF14500 MMS19_N: Dos2-interac 64.3 1.7E+02 0.0037 34.0 15.4 138 1110-1274 97-242 (262)
25 PF10274 ParcG: Parkin co-regu 58.2 73 0.0016 34.8 10.1 86 82-178 26-111 (183)
26 cd03565 VHS_Tom1 VHS domain fa 55.6 1E+02 0.0023 32.2 10.6 75 374-448 39-116 (141)
27 KOG1525 Sister chromatid cohes 55.4 4.5E+02 0.0096 37.3 19.0 59 1310-1379 272-330 (1266)
28 cd03568 VHS_STAM VHS domain fa 49.5 1.4E+02 0.003 31.5 10.3 72 373-447 37-110 (144)
29 PF09324 DUF1981: Domain of un 47.2 16 0.00034 34.9 2.7 32 863-894 37-68 (86)
30 KOG1062 Vesicle coat complex A 45.8 7.1E+02 0.015 33.2 17.2 85 1157-1268 295-379 (866)
31 cd03567 VHS_GGA VHS domain fam 44.3 2.2E+02 0.0048 29.8 10.8 75 373-447 38-116 (139)
32 PF11640 TAN: Telomere-length 44.0 3E+02 0.0066 29.1 12.1 105 1244-1354 9-117 (155)
33 PF00790 VHS: VHS domain; Int 39.1 2.5E+02 0.0053 29.2 10.3 73 373-447 42-118 (140)
34 PF12719 Cnd3: Nuclear condens 36.7 85 0.0018 37.1 7.3 66 1252-1328 77-145 (298)
35 KOG0166 Karyopherin (importin) 35.4 9.5E+02 0.021 30.7 16.0 146 1238-1412 320-488 (514)
36 KOG2023 Nuclear transport rece 33.3 8E+02 0.017 32.1 14.6 95 1156-1267 582-690 (885)
37 PF01602 Adaptin_N: Adaptin N 31.6 1.2E+03 0.025 29.6 28.6 35 1045-1081 110-144 (526)
38 PF03224 V-ATPase_H_N: V-ATPas 30.6 2.2E+02 0.0048 33.8 9.5 128 339-477 71-201 (312)
39 PF12830 Nipped-B_C: Sister ch 30.5 1.8E+02 0.0038 32.0 8.0 90 93-200 7-96 (187)
40 PF08767 CRM1_C: CRM1 C termin 30.0 1E+03 0.022 28.4 21.9 238 347-631 18-319 (319)
41 cd03561 VHS VHS domain family; 29.4 3.4E+02 0.0074 27.9 9.5 73 374-447 38-112 (133)
42 cd00256 VATPase_H VATPase_H, r 28.1 9E+02 0.02 30.3 14.2 124 339-480 68-198 (429)
43 smart00288 VHS Domain present 27.6 6E+02 0.013 26.2 10.9 71 375-447 39-111 (133)
44 KOG1943 Beta-tubulin folding c 27.3 7.9E+02 0.017 33.9 13.9 97 1310-1408 771-868 (1133)
45 PF08623 TIP120: TATA-binding 26.8 6.5E+02 0.014 27.3 11.1 130 1248-1406 36-167 (169)
46 PF12765 Cohesin_HEAT: HEAT re 25.3 71 0.0015 26.1 2.8 25 1239-1263 18-42 (42)
47 KOG1242 Protein containing ada 25.3 1.6E+03 0.034 29.1 18.5 34 1235-1268 291-324 (569)
48 KOG1059 Vesicle coat complex A 24.4 1.8E+03 0.039 29.4 21.6 185 1049-1268 144-365 (877)
49 cd03561 VHS VHS domain family; 23.9 4.1E+02 0.0088 27.4 8.8 92 93-220 18-110 (133)
50 PTZ00429 beta-adaptin; Provisi 23.0 2E+03 0.043 29.4 21.3 50 1236-1286 137-186 (746)
51 cd06571 Bac_DnaA_C C-terminal 22.7 3E+02 0.0066 26.2 7.1 61 557-623 5-66 (90)
52 KOG1047 Bifunctional leukotrie 22.6 2.4E+02 0.0052 35.8 7.7 40 605-645 392-431 (613)
53 KOG1319 bHLHZip transcription 22.3 3.2E+02 0.0069 29.7 7.4 79 140-221 145-224 (229)
54 cd03568 VHS_STAM VHS domain fa 22.3 3.9E+02 0.0085 28.1 8.3 62 339-405 51-113 (144)
55 PF11707 Npa1: Ribosome 60S bi 22.0 6.8E+02 0.015 30.1 11.5 106 340-451 129-241 (330)
56 PF14664 RICTOR_N: Rapamycin-i 21.9 6.2E+02 0.013 31.1 11.2 42 1241-1288 242-283 (371)
57 cd03569 VHS_Hrs_Vps27p VHS dom 21.9 5.8E+02 0.013 26.7 9.5 72 373-447 41-114 (142)
58 smart00760 Bac_DnaA_C Bacteria 21.3 2.1E+02 0.0045 25.1 5.2 53 557-613 6-59 (60)
59 KOG2025 Chromosome condensatio 20.6 1.4E+03 0.029 30.4 13.6 149 1085-1263 34-188 (892)
60 PF13513 HEAT_EZ: HEAT-like re 20.4 1.2E+02 0.0026 25.7 3.5 27 1239-1265 28-54 (55)
61 KOG2956 CLIP-associating prote 20.1 3.4E+02 0.0073 33.9 8.0 78 1240-1332 288-365 (516)
No 1
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-239 Score=2190.58 Aligned_cols=1356 Identities=51% Similarity=0.811 Sum_probs=1206.3
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhcCCCCcccccCCchhhhchHHHHHHHHHHHHhhhcccCCCCChhhhhHHHHHHhcc
Q 000513 26 IKPSGGAFACMINSEIGAVLAVMRRNVRWGVRYMADDEQLEHSLIHSLKELRKQIFLWQNQWHKVDPAVYLQPFLDVIQS 105 (1453)
Q Consensus 26 ~~~~~~~~~~~~~~e~~~v~~~mr~~~r~~~~~~~~~~~~~~pl~~~f~~Lr~~l~~~~~~~~~~d~~~~l~PFl~vi~s 105 (1453)
++.+.....++|+.++.+++++|||+.||..|+..+.+..+|||+++|++||.+|+++ ++|+++||.+||+|||+||+|
T Consensus 2 ~k~~~~~~~~~in~~vg~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~f~~Lr~~ln~~-~~l~~idp~~~L~PFL~vI~s 80 (1386)
T KOG0928|consen 2 RKTSRYISQGMINILVGAVLAVFRRNDRWSVRSFTNLDTSSHSLLSSFKQLREVLNSL-ASLDTIDPLTYLSPFLEVIKS 80 (1386)
T ss_pred CcccchhhhhhhHHHHhHHHHHHHhccchhhccCCCCcccchHHHHHHHHHHHHhhch-hhhccCChHhHHhHHHHHHhc
Confidence 3566777889999999999999999999999988777777899999999999999999 789999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHhcCCcCCCCcchHHHHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHccccccccCh
Q 000513 106 DETGAPITGVALSSVYKILILDVLDLDTVNVGEAMHLIVEAVTSCRFEVTDPASEEVVLMKILQVLLACMKSKAAVKLSN 185 (1453)
Q Consensus 106 ~~t~~~iT~~AL~sl~kfl~~~~i~~~s~~~~~a~~~i~~avt~crfe~td~~sDe~VllkiLq~l~~~~~~~~g~~l~~ 185 (1453)
++|+||||++||+||+||++|++|+++++|++.||+.+++||||||||+||++|||+|||||||||++||++|+|.+|+|
T Consensus 81 ~~~~g~iTslALssv~Kflt~~iid~~s~n~~~am~~~v~AvthcRFe~td~~Sde~VllkilqvLr~lm~sp~~~lLSn 160 (1386)
T KOG0928|consen 81 DETTGPITSLALSSVLKFLTLNIIDESSPNAADAMRNIVDAVTHCRFEGTDPASDEVVLLKILQVLRSLMDSPAGALLSN 160 (1386)
T ss_pred ccCCccHHHHHHHHHHHHheeeecCccCccHHHHHHHHHHHHHheeeeccCccchhHHHHHHHHHHHHHHhCchhhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHccCCCCccccc--ccccCC-CCCCCCCcccccccccCCCC
Q 000513 186 QHVCNIVNTCFRVVHQASSKGELLQRIARQTMHELVRCIFSHLPHIDCLEQ--SSALGS-RSDNGNKVGLMEKEITSGSK 262 (1453)
Q Consensus 186 ~~v~~~l~~c~~l~~q~~~~se~lr~tAe~tl~~iv~~vF~rl~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~ 262 (1453)
+.||++|||||++|||+ ++|+|||++||+||.+|++.||+|||++++.-. .+.+.+ +++ .+..+...+.+
T Consensus 161 q~Ic~ivqTcl~v~~q~-~lselLr~~Ae~Tm~~~~~~IFsrLk~~~~~~~~~~~~~~es~~~------~~~~~~~i~~k 233 (1386)
T KOG0928|consen 161 QIICDIVQTCLRVVCQS-RLSELLRKSAEHTMHDLTQLIFSRLKYIEPPYVNEMYINDESYQG------NVLKDDFIGTK 233 (1386)
T ss_pred hHHHHHHHHHHHHHHHH-hHHHHhhcchhhhHHHHHHHHHHhCccccccccchhhcchHhhhc------ccccccccCcc
Confidence 99999999999999996 999999999999999999999999999985211 111111 111 11111222333
Q ss_pred CCCCCCCccccCCCCccccCCC---Cccccc--------CCCCCCcccccCCCChhHHHHHHHHHHhhhcccccCCCCCC
Q 000513 263 PLENGNVSVERDGQSSVEANNG---ETTVEM--------GSTENGEKIMMEPFGVPCMVEIFHFLCSLLNAIENMGIGPR 331 (1453)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~~~~~~pygl~~~~~lf~~L~sL~~~~~~~~~~~~ 331 (1453)
.+++|...++.+.........+ +..+.. ............+||+||++++|++||+|+++
T Consensus 234 ~~en~e~~~~~~~a~~~~~~~~~~~~~~v~~~~~~~~~~~e~a~~~~~~~~~ygip~~~~~~h~l~sl~~~--------- 304 (1386)
T KOG0928|consen 234 RVENGEISSEDESATFDDGSISEKFEVPVQQVDREQETDEENAEAMAAMDENYGIPVMKDIFHFLLSLLNV--------- 304 (1386)
T ss_pred cCCCCCccCcccccccccccccccccCCccccccccCChhhhhhHhhcccccCCCceeccchhhhhhhccc---------
Confidence 4444332221111100000000 000000 00012223466899999999999999999998
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhh-----cCCchHHHHHHHHHHHHHHHHHHH
Q 000513 332 GNPIADDEDVPLFALSLINSAIELGGSSIGKYPRLLVLIQDELFRYLMQFG-----LSMSPLILSTVCSIVLNLYHHLRV 406 (1453)
Q Consensus 332 ~n~~~~~~~~~~~~L~Li~~~le~~g~~~~~~p~l~~li~d~lc~~Ll~~~-----~s~~~~i~~~slri~~~L~~~~r~ 406 (1453)
.|++++++++++++|.|||+++|.+|+.|+.||.|+.+++|+++++++..+ .+-.+.++++.+.++.+|+..+|.
T Consensus 305 ~n~~~~~es~~~~~l~lin~aie~~g~~i~~~prll~liqd~~fk~l~~~~~~~~k~s~~~~~Lql~~s~vl~l~~~lr~ 384 (1386)
T KOG0928|consen 305 TNTVAHDESVRSFALVLINSAIELGGDCIREHPRLLRLIQDPLFKHLIEFLQIPTKMSLERLVLQLFCSLVLNLYLALRE 384 (1386)
T ss_pred cccccchhhhhHHHHHHHHhhHhhcchHHHHhhHHHHHhccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhhhhhh
Confidence 367789999999999999999999999999999999999999999999999 666667999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcChhHHHHHHHccCCCCCCCchHHHHHHHHHhccCCCCCC
Q 000513 407 ELKAQLEAFFSCVLLRLAQSKHGSSYQQQEVAMEALVDLCRQQSFMSEMYANFDCDITCGNLFEDLTNLLSKSAFPVNGP 486 (1453)
Q Consensus 407 ~Lk~qlE~fl~~l~~~l~~~~~~~~~~~r~l~LE~l~~l~~~p~~~~~lf~NYDCd~~~~nlfe~l~~~L~k~~~p~~~~ 486 (1453)
++|.|+|.||+.+..++...+++.++++|++|+|.++.|||.|.|++++|+|||||++|+||||++++.|+|++||++++
T Consensus 385 ~~k~qle~~Fs~l~~~~~~~~~~~~~~~~e~ale~lv~~~R~p~F~~e~yvNfDCd~~csnlfedl~k~LtknafP~sg~ 464 (1386)
T KOG0928|consen 385 QLKLQLEAFFSILLLRGTAEEYGPPYEQQEVALEALVLLCRIPSFLTEMYVNFDCDLYCSNLFEDLIKLLTKNAFPVSGP 464 (1386)
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhhhhhHHHHHHHHHHccCCcccc
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhH--HHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHhhh
Q 000513 487 LSAMHV--LALDGMISMVQGMAERISNEFPAPEGATVDPEEYNAFWTLKCSDYSDPNNWIPFVRKMKYIKRKLMVGADHF 564 (1453)
Q Consensus 487 ~~~~~~--l~L~~l~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~K~~~~~~~~~F 564 (1453)
++++++ +||++++++++.+.++..... ..++|..+|+ .|+..++.+| +|++++.|+++|
T Consensus 465 ~tt~~i~~l~l~~v~~l~e~~~~~l~~~d------------~~ef~~~k~e------~~v~~iR~rk-~K~~li~gae~F 525 (1386)
T KOG0928|consen 465 LTTASILPLDLEGVLGLAENMIDELQDSD------------REEFWTDKCE------VWVLFIRSRK-RKRELILGAELF 525 (1386)
T ss_pred cccccccchHHHHHHHHHHHHHhhccccC------------cCccccCCcc------hhhhhhccch-hhHHHHHHHHHh
Confidence 988776 566666666665554433221 1456665555 4555566555 799999999999
Q ss_pred cCChhhhHHHHHhCCCCCCCCChHHHHHHhhhcCCCCHHHHHhhhcCCChhhHHHHHHHHhcCCCCCCChHHHHHHHHcc
Q 000513 565 NRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGDFLGNHDEFCVQVLHEFAGTFNFRGMNLDTALRLFLGT 644 (1453)
Q Consensus 565 n~~pk~gi~~l~~~~~~~~~~~~~~ia~fl~~~~~l~k~~ige~l~~~~~~~~~vl~~f~~~fdf~~~~i~~alR~~l~~ 644 (1453)
|++|||||+||+++|+|+++.||..+|.|||+||+|||++||+|||++++ .+||++|+++|||+||++|+|||.||++
T Consensus 526 Ne~pkKGi~fL~ek~li~~~~d~~~~~~ffr~n~rLdKk~iGdfLc~~k~--~~vLn~Fi~tFdF~gmrlDeALRl~L~s 603 (1386)
T KOG0928|consen 526 NEDPKKGIEFLQEKGLIPSDLDPTSVAEFFRYNPRLDKKTIGDFLCDPKN--VSVLNEFIGTFDFQGMRLDEALRLFLES 603 (1386)
T ss_pred ccChhhHHHHHHhcCccCCCCChHHHHHHHHhCccccHHHHHHHhcCcch--HHHHHHHHHhcCcCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997 9999999999999999999999999999
Q ss_pred ccCCCchhHHHHHHHHHHHHHHhhCC-CCCCChhhHHHHHHHHHHhhhcccChhhhccCCHHHHHHhhcccCCCCCCCHH
Q 000513 645 FRLPGESQKIQRVLEAFAERYYEQSS-DILSDKDAALLLSYSLILLNTDQHNAQVKKKMTEEDFIRNNRSINGGKDLPRE 723 (1453)
Q Consensus 645 frlPgE~q~Idri~e~Fa~~y~~~n~-~~~~~~d~~~~l~~siimLntdlhn~~~k~~mt~~~F~~n~~~~~~~~d~~~~ 723 (1453)
||||||+|+|+||+|+||++||++|+ ++|+++|+||+|||||||||||+||||||++||++||+||+||+|+|+|||+|
T Consensus 604 FRLPGESQ~IeRVlEAFSery~~~n~~~~~~~kDavFvLsYSIIMLNTDqHNpqVK~~MT~dDf~rNlrg~n~g~DFpre 683 (1386)
T KOG0928|consen 604 FRLPGESQKIERVLEAFSERYYSDNSPDIFADKDAVFVLSYSIIMLNTDQHNPQVKRKMTFDDFIRNLRGINGGKDFPRE 683 (1386)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHhcCCCccccccchhhhhhhhhheecccccChhhhccCCHHHHhhhcccccCCCCCCHH
Confidence 99999999999999999999999887 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccCCccCCCCCCCChhHHHHHHhhccCCCCceeccccccchHHHHHhchHHHHHHHHHHHhhcCCH
Q 000513 724 YLAELYHSICENEILMIPEQGAGSPVMTSSRWINVLHKSREATPFIVCDSRALLDHDMFIILSGPTVAAMSVIFDQVERE 803 (1453)
Q Consensus 724 ~L~~iy~~I~~~~i~~~~e~~~~~~~~~~~~w~~ll~~s~~~~~~~~~~~~~~~~~~mf~~~w~~ilaals~~f~~a~D~ 803 (1453)
||.+||++||++||+||++ ++|...++.++|..++.|++++.|++.++...++|++||..+|+|+++|++++|+.+++|
T Consensus 684 yLseiY~SIk~~EIvmPee-~hG~~~~~~~~W~~L~~~sktt~~~~~~~~~~~~drdlF~~v~gp~iaals~vFd~a~~d 762 (1386)
T KOG0928|consen 684 YLSEIYQSIKTNEIVMPEE-HHGTEEMFEYRWINLISRSKTTEPFILRDFTLVYDRDLFAMVWGPIIAALSYVFDVAESD 762 (1386)
T ss_pred HHHHHHHHHhhcceecccc-cCCchhhhHHHHHHHHhcccccCceeeccchhhhhHHHHHHHccchHHHHHHHhchhhHH
Confidence 9999999999999999888 567777888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHhccCCCccc-hhHHHHhhCCChHHHHHHHHHHHHHhhcCCccccc
Q 000513 804 DVLQRCVDGFLAVAKLSTFYHFGDILDDLVVSVCKFTTLLTPLS-VEEAVLALGDDTKARMALTTLFTIANRYGDYIHSG 882 (1453)
Q Consensus 804 ~i~~~~L~g~~~~a~ia~~~~l~~~~D~~l~~L~k~t~l~~~~~-v~~~~v~fG~~~K~~la~~~Lf~ia~~~G~~L~~s 882 (1453)
+++++|++|+++||.|+++||+.+++|.++.+|||||++.+|.. +++.+..||.|.|+++|+.++|.+++++|++++.+
T Consensus 763 ~I~~r~i~g~~k~a~isA~y~l~dv~ddli~slCkfTtL~~~s~~~eel~~~fged~ka~~At~tvf~~~n~~Gd~i~~g 842 (1386)
T KOG0928|consen 763 TILQRCIDGIRKCAKISAYYGLKDVFDDLIISLCKFTTLLNPSSTPEELVLAFGEDTKARMATLTVFFGANKFGDLIRVG 842 (1386)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccccCCccCchHHHHHhcccchhHHHHHHHHHHhhccccHHHHH
Confidence 99999999999999999999999999999999999999998875 78899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCccccccccCCCCCCCcccccCcCCCCcccC-CCCCCCCCCCCCccccccccccccCCCCCCC
Q 000513 883 WKNILDCVLSLHKLGLLPARLVSDAADDMEPSSDQEQEKPATSSVSTS-HVTPVATPRKSSSLIGRFSQLLSFDMEEPRL 961 (1453)
Q Consensus 883 W~~Il~~i~~L~~~~Llp~~~~~~~~~~~~~~~~~~~~k~~~~sl~~~-~~~~~~~~~~~sgllS~fss~ls~~~~e~~~ 961 (1453)
|++|++|+.+|+++.|+|..+.+++..+.+ .+..++.|.| +..+.++++.++|++|+|++||++|+.+.+|
T Consensus 843 w~nI~~~~l~l~r~~llp~~~~e~~~~~~~--------~~~~~~~~~~~~~~~~~k~~~ss~Lls~fs~~Ls~d~e~~~~ 914 (1386)
T KOG0928|consen 843 WRNIVECLLQLNRLVLLPLRLIEDLKNEPE--------LLKLNKLPVPQQEISINKPRKSSGLLSRFSSYLSGDEEEERP 914 (1386)
T ss_pred HHHHHHHHHHHHhhccCcHhhhhhhhcCcc--------ccccCCCCCCccccCcccccccchHHHHHHHhcCCcccccCC
Confidence 999999999999999999998876533321 1223444543 3456677789999999999999999999999
Q ss_pred CCCHHHHHHhhhhHhHHHhhchhhhhhccccCCHHHHHHHHHHHHHHhhhhccCCCCCCCCCchhhHHHHHHHHHhhcch
Q 000513 962 QPSEEELAAHQRTRDIIQNCHIDSIFSESKFLQAESLLDLVKALILASGRLRKGSSSGEDEDTGVFCLELLIAITLNNRD 1041 (1453)
Q Consensus 962 ~pt~eei~~~~~a~~cI~~~~i~~LF~~s~~L~~esL~~lI~aL~~~s~~~~~~~~s~~~e~~~~F~Le~lv~v~l~N~~ 1041 (1453)
.||+|++++.++|.+||++|+++++|+++++|+.+++..++++|+..+... +.++++..+|++|+++.|++.|+|
T Consensus 915 ~Ptee~l~~~~~a~~cIk~c~i~~if~~s~~l~~~~l~~Ll~Sli~~s~~~-----s~~de~s~~F~lElli~I~l~nrd 989 (1386)
T KOG0928|consen 915 CPTEEELSASKKALECIKECHIDQIFTKSKFLQAKSLLTLLKSLIAASNDL-----SMEDEESAVFCLELLIAITLSNRD 989 (1386)
T ss_pred CCcHHHHhhhHHHhhHHHhcCHHHHhhhcccccHHHHHHHHHHHHHhcCCc-----cCcccchHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999887543 567899999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHccCHHHHHHhhhHHHHHHH
Q 000513 1042 RIMLIWHGVYEHIANIVQSTVM-PSMLVEKAVFGLLRICQRLLPYKENLTEELLKSLQLILKLDARVADAYCEPITQEVM 1120 (1453)
Q Consensus 1042 Ri~~~W~~v~~hL~~i~~~~~~-~~~l~erAv~~LlrL~~~ll~~~e~l~~~ll~~L~~L~~l~~~v~~~~~~~Il~~L~ 1120 (1453)
|+..+|+.+++|+..++..+.. ++.++++|+.+++|+|+|++.|++.+.++++++++.++++++.+.+.+.+++...+.
T Consensus 990 ri~l~w~~~~e~ll~~~~~~~~~~~~lvek~v~gl~rv~~rll~yk~~l~d~l~~sl~~ll~L~~ki~d~~~~ki~i~~~ 1069 (1386)
T KOG0928|consen 990 RILLSWFAVYEHLLGLLIQTLMGSPLLVEKAVSGLLRVVNRLLPYKEFLSDELLDSLRILLKLDPKILDAFLDKIAIFVS 1069 (1386)
T ss_pred ceEeeehhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHhhcHHHHHHHHHHHHHHHH
Confidence 9999999999999998887765 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCccCCcChHHHHHHHhhhhcCCcchhhHHHHHHHHHhhcccCChhhHHHHHHHHHHHHhcccchhhhHHHHH
Q 000513 1121 RLVKANSTHIRSHVGWRTIISLLSITARHPEASEAGFEALAFIMSEAAHLLPSNFILCVDAARQFAESRVGEVDRSVSAL 1200 (1453)
Q Consensus 1121 ~Ll~~~~~~L~s~~gW~~If~iL~~~a~~~~~~~~aFe~L~lIi~d~~~L~~~n~~~~V~~L~~F~~q~~~~~~~S~~Al 1200 (1453)
+++..+++++++..||.++|++|..+++||++...+|..+-..+.|..|++|++|..||+|.+.|++++.+.+.++...+
T Consensus 1070 ~lv~~n~~~v~~~~~w~~~~slL~~~~~h~~a~~~~~~~~l~~m~e~~hl~~~~fe~~v~~~~~fve~~~~~~~~~l~~l 1149 (1386)
T KOG0928|consen 1070 KLVKANAANVHSKDGWALLFSLLELTARHPEADFLKFYRLLSKMSEASHLTPDNFELYVDCGSTFVEARVGQIMRSLSLL 1149 (1386)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhcCCchhHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999999999998888888899999999999999999999999776678888899
Q ss_pred HHHHHhHHHHHhhchhhhhhcchhH-HhhhhhhhHhhHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhhhcCCCCChHH
Q 000513 1201 ELMAGSVVSLVRWSSEAKNAVGEEA-AIKLSQDIGEMWLRLVQGLKKVCLDQREEVRNHAVLALQRSLAAVDGIRLPNAL 1279 (1453)
Q Consensus 1201 dlL~~~~~~l~~~~~~~~~~~~~~~-l~~~~~~~~~lW~pLL~~La~lc~D~R~EVR~~AiqtLfr~L~~~~g~~l~~~~ 1279 (1453)
|.+......+.+|..+.+....+.+ ..+.......+|++|++.++++|+|.|++|||+|++.|||+ ..+.++.+.+..
T Consensus 1150 de~s~sg~~~~kw~~~~~~~~~~~~~~~~~~~~~~~~wl~l~~~~~kl~L~~r~~vRn~aL~~lqr~-~~~~~q~l~~~~ 1228 (1386)
T KOG0928|consen 1150 DEMSSSGEVLDKWEIEAKNATESGDESKKSNNYRSEIWLILLQIIRKLCLLSRRGVRNAALTKLQRI-IGALDQGLAHSY 1228 (1386)
T ss_pred hhhcccccchhHHHHHHhhhhcccccccccchhhHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHH-HHhhhcccchHH
Confidence 9988877778888765544322222 11223333469999999999999999999999999999997 448999999999
Q ss_pred HHHHHHHHhHhhHHHHHHHhhhCCCccccc--hhHHHHHHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHHhhh
Q 000513 1280 WFQCFDMVIFTLLDDLLEIAQASSPKDYRN--IDGTLVLAMKLMSKAFLQQLQDLSQQPSFCKLWLGVLDHMDKYMKLKL 1357 (1453)
Q Consensus 1280 W~~~f~~VLFPLL~~l~~~~~~~s~~d~~~--~~ET~~lal~lLskvFl~~l~~L~~~~~F~~lW~~iLd~l~~~~~~~~ 1357 (1453)
|..||+.|+||+++.+++.... .+.++ |++|++++.++++|+|++|+..+++.+.|..+|.++|++|++||+.+.
T Consensus 1229 ~~~Cf~~vlfpll~~l~~~l~~---~~~~~~~me~t~~~~~~Ll~k~~L~~lq~ls~~~~f~~Lwl~~ld~m~~l~~~~~ 1305 (1386)
T KOG0928|consen 1229 WNPCFDLVLFPLLTDLLELLSD---ASEKGNEMEVTLLLATKLLSKVFLQELQDLSSLSMFSTLWLGVLDRMEKLMRGKT 1305 (1386)
T ss_pred HHHHHHHHhHHHHHHHHHHhcc---cccccchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999887543 34444 999999999999999999999999999999999999999999999877
Q ss_pred cCCCchhHhhHHHHHHHHHHHhhhhcCCcCCCCCCCccchHHHHHHHHHHhchhhccCCCCCChhhHHHHhhhccCCCCC
Q 000513 1358 RGKRSDKIHELIPELLKNNLLVMKTTGILLPTDDIGGDSFWQLTWLHVKKISPSMQSEVFPDHELEQLKAKLVKTGGTSA 1437 (1453)
Q Consensus 1358 ~~~~s~~l~Eav~esLKN~Llvm~~~g~l~~~~~~~~~~lW~~Tw~~i~~~~P~L~~el~p~~~~~~~~~~~~~~~~~~~ 1437 (1453)
+.++++.+.|++||.||||++||++.|++.+.+..+..++|+.||.+++.|.|.|+.||||+.+..+++....++.++++
T Consensus 1306 ~e~~~~~l~e~~pe~l~~~~~~m~~~ei~~~~~~~~~~~~w~~tw~~~~~~~p~l~~El~~~~e~~~~~~~~~~~~~~~~ 1385 (1386)
T KOG0928|consen 1306 SEETSDKLNEIVPELLKNMLLVMKLQEIILDKDEIGKDSLWEITWERLNKIAPSLRDELFPDTEIDDPKPDEKQPEQSTV 1385 (1386)
T ss_pred ccchhhhHHhhhhhhhhhhhhhhhccccccCcccccccchHHHHHHHHHhcCchhhhhhCCCCCCCCCCCcccCccCCCC
Confidence 77779999999999999999999999999887766678899999999999999999999999999988877777766665
No 2
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=100.00 E-value=1.2e-176 Score=1742.56 Aligned_cols=1266 Identities=24% Similarity=0.398 Sum_probs=970.2
Q ss_pred CCChhhhhHHHHHHhccCCCCcchHHHHHHHHHHHHhcCCcCCCCc----chHHHHHHHHHHHhcccccccCCCchHHHH
Q 000513 89 KVDPAVYLQPFLDVIQSDETGAPITGVALSSVYKILILDVLDLDTV----NVGEAMHLIVEAVTSCRFEVTDPASEEVVL 164 (1453)
Q Consensus 89 ~~d~~~~l~PFl~vi~s~~t~~~iT~~AL~sl~kfl~~~~i~~~s~----~~~~a~~~i~~avt~crfe~td~~sDe~Vl 164 (1453)
..+|..++.||.++|+|+ +.+|+.+||+||+|+++||+|+...+ ....-+..++++||.|. + ..||.|+
T Consensus 81 ~~~~~~i~~pl~lac~s~--~~ki~~~ALdcl~KLis~~~i~~~~~~~~~~~~~lid~~i~~Ic~c~-~----~~de~iq 153 (1780)
T PLN03076 81 LAESELILSPLINACGTG--SAKIVDPALDCIQKLIAHGYLRGEADPSGGPEALLLAKLIESVCKCH-D----LGDEGIE 153 (1780)
T ss_pred ccCHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHHHHhhcCCCCCCCCCccccHHHHHHHHHHhhc-c----CCchHHH
Confidence 358999999999999999 99999999999999999999965432 23366889999999995 3 4578999
Q ss_pred HHHHHHHHHHHccccccccChHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHccCCCCcccccc---cccC
Q 000513 165 MKILQVLLACMKSKAAVKLSNQHVCNIVNTCFRVVHQASSKGELLQRIARQTMHELVRCIFSHLPHIDCLEQS---SALG 241 (1453)
Q Consensus 165 lkiLq~l~~~~~~~~g~~l~~~~v~~~l~~c~~l~~q~~~~se~lr~tAe~tl~~iv~~vF~rl~~~~~~~~~---~~~~ 241 (1453)
|+|||+|+++|+++. ..+||+++.++|++||+|+. .+|+++++.||.+||+|||..||+|+..-...... ..++
T Consensus 154 Lqilk~Ll~~v~s~~-~~vhg~~LLkaVR~cyni~l--~Sks~~nq~tA~atLtQmv~~VF~R~e~~~~~~~~~~~~~~~ 230 (1780)
T PLN03076 154 LLVLKTLLSAVTSTS-LRIHGDCLLQAVRTCYDIYL--GSKNVVNQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVAE 230 (1780)
T ss_pred HHHHHHHHHHHcCCC-ceeEHHHHHHHHHHhheeee--cCCcHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence 999999999999976 78999999999999999976 58999999999999999999999999632110000 0000
Q ss_pred C--CCCCCCCc-----------cccccccc---CC-C---C-C--CCCCCCc--cc-cCCCCcc----ccCC--CCccc-
Q 000513 242 S--RSDNGNKV-----------GLMEKEIT---SG-S---K-P--LENGNVS--VE-RDGQSSV----EANN--GETTV- 288 (1453)
Q Consensus 242 ~--~~~~~~~~-----------~~~~~~~~---~~-~---~-~--~~~~~~~--~~-~~~~~~~----~~~~--~~~~~- 288 (1453)
. .......+ ..+..+.+ .+ . . . ...+... .. ....+.. .+.. .+...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1780)
T PLN03076 231 LMEPAEKSDSDTSMTQFVQGFITKIMQDIDGVLNPATAGKSSGSGAHDGAFETTATVETTNPADLLDSTDKDMLDAKYWE 310 (1780)
T ss_pred ccccccccccccchhhhhhhhhhhhccccccccCcccccccccccccccccccccccCCCCcchhhcccccccccccccc
Confidence 0 00000000 00000000 00 0 0 0 0000000 00 0000000 0000 00000
Q ss_pred -----ccCC---CC--CCc----cccc----CCCChhHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCchHHHHHHHHH
Q 000513 289 -----EMGS---TE--NGE----KIMM----EPFGVPCMVEIFHFLCSLLNAIENMGIGPRGNPIADDEDVPLFALSLIN 350 (1453)
Q Consensus 289 -----~~~~---~~--~~~----~~~~----~pygl~~~~~lf~~L~sL~~~~~~~~~~~~~n~~~~~~~~~~~~L~Li~ 350 (1453)
.... +. .++ .... .-| ...+..+||.||.|....-+... ...+ +.-+.|++||+||+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~kDAflvFr~lCkLs~K~~~~~~--~~d~--~~~rsKllsL~Li~ 385 (1780)
T PLN03076 311 ISMYKSALEGRKGELADGEVEKDDDLEVQIGNKL-RRDAFLVFRALCKLSMKTPPKEA--LADP--QLMRGKILALELLK 385 (1780)
T ss_pred cccccccccccccccccccccccchhhhhhhhhh-hhhHHHHHHHHHHHhCCCCCCCc--cccH--HHHHHHHHHHHHHH
Confidence 0000 00 000 0000 012 34458999999999764222110 0011 34577899999999
Q ss_pred HHHHhCCCCCCCchHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 000513 351 SAIELGGSSIGKYPRLLVLIQDELFRYLMQFGLSMSPLILSTVCSIVLNLYHHLRVELKAQLEAFFSCVLLRLAQSKHGS 430 (1453)
Q Consensus 351 ~~le~~g~~~~~~p~l~~li~d~lc~~Ll~~~~s~~~~i~~~slri~~~L~~~~r~~Lk~qlE~fl~~l~~~l~~~~~~~ 430 (1453)
+|||++|+.|.+||.|+.+||++||++|++++.|+.++||+++|+||++|+.+||.|||.|||+||+.|+++++++..++
T Consensus 386 ~ile~~g~~f~~~~~fi~~ik~~Lc~sL~~n~~S~~~~vf~lsl~If~~L~~~~R~~LK~eievF~~~I~l~ile~~~~~ 465 (1780)
T PLN03076 386 ILLENAGAVFRTSDRFLGAIKQYLCLSLLKNSASSLMIIFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQP 465 (1780)
T ss_pred HHHhcccHhhhcCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987656
Q ss_pred CHHHHHHHHHHHHHHhcChhHHHHHHHccCCCCCCCchHHHHHHHHHhccCCCCCCc---------hhhhHHHHHHHHHH
Q 000513 431 SYQQQEVAMEALVDLCRQQSFMSEMYANFDCDITCGNLFEDLTNLLSKSAFPVNGPL---------SAMHVLALDGMISM 501 (1453)
Q Consensus 431 ~~~~r~l~LE~l~~l~~~p~~~~~lf~NYDCd~~~~nlfe~l~~~L~k~~~p~~~~~---------~~~~~l~L~~l~~~ 501 (1453)
+++||+++||+|.++|++|++++|||+|||||.+++||||++++.|+|++++..+.+ ..++.+||+||+++
T Consensus 466 s~~qK~~~L~~L~~lc~dp~~lveiyvNYDCD~~~~NifE~lv~~Lsk~a~~~~~~~~~~~~~~qe~~lk~~aLecLv~i 545 (1780)
T PLN03076 466 NFQQKMIVLRFLDKLCVDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGVETTLLPPQEAAMKLEAMKCLVAI 545 (1780)
T ss_pred CHHHHHHHHHHHHHHHhCccHHHHHHhccCCCCCCchHHHHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999654322 35788999999999
Q ss_pred HHHHHHhhhcCCCCCCC-C--------CCCccccccccccc-------CCCCCC---CCCchHHHHHHHHHHHHHHHHHh
Q 000513 502 VQGMAERISNEFPAPEG-A--------TVDPEEYNAFWTLK-------CSDYSD---PNNWIPFVRKMKYIKRKLMVGAD 562 (1453)
Q Consensus 502 i~~i~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~-------~~~~~~---~~~~~~~l~~~k~~K~~~~~~~~ 562 (1453)
+++|.+|++........ . ........+.+... ++...+ ...+.+.++++|++|+.+.+|+.
T Consensus 546 l~sl~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~K~~l~~g~~ 625 (1780)
T PLN03076 546 LRSMGDWMNKQLRLPDPASLKKLDAVENNLEPGSLPVANGNGDENGEGSDSHSELSSETSDAATIEQRRAYKLELQEGIS 625 (1780)
T ss_pred HHHHHHHHHhhccCCcccccccchhhccccccccccccccccccccccccccccccccCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999998753100000 0 00001111122100 000011 12334689999999999999999
Q ss_pred hhcCChhhhHHHHHhCCCCCCCCChHHHHHHhhhcCCCCHHHHHhhhcCCChhhHHHHHHHHhcCCCCCCChHHHHHHHH
Q 000513 563 HFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGDFLGNHDEFCVQVLHEFAGTFNFRGMNLDTALRLFL 642 (1453)
Q Consensus 563 ~Fn~~pk~gi~~l~~~~~~~~~~~~~~ia~fl~~~~~l~k~~ige~l~~~~~~~~~vl~~f~~~fdf~~~~i~~alR~~l 642 (1453)
+||+|||+||+||+++|++++ +|++||+||+++++|||++||||||++++|+.+||++|++.|||+|++||+|||.||
T Consensus 626 ~FN~~Pk~Gi~~L~~~~~i~~--~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~fdF~g~~~d~ALR~fL 703 (1780)
T PLN03076 626 LFNRKPKKGIEFLINANKVGE--SPEEIAAFLKDASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGMEFDEAIRAFL 703 (1780)
T ss_pred HHccCHHHHHHHHHHcCCCCC--CHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhCCcCCCCHHHHHHHHH
Confidence 999999999999999999975 899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHhhhcccChhhhccCCHHHHHHhhcccCCCCCCCH
Q 000513 643 GTFRLPGESQKIQRVLEAFAERYYEQSSDILSDKDAALLLSYSLILLNTDQHNAQVKKKMTEEDFIRNNRSINGGKDLPR 722 (1453)
Q Consensus 643 ~~frlPgE~q~Idri~e~Fa~~y~~~n~~~~~~~d~~~~l~~siimLntdlhn~~~k~~mt~~~F~~n~~~~~~~~d~~~ 722 (1453)
.+||||||+|+||||||+||+|||+|||+.|.++|++|+|+||+||||||+|||++|+|||+++|++|+||+|+|+|||+
T Consensus 704 ~~FrLPGEaQ~IdRime~Fa~rY~~~Np~~f~~~D~~yvLaysiIMLnTDlHnp~vk~kMt~~~Fi~n~rgin~g~dlp~ 783 (1780)
T PLN03076 704 QGFRLPGEAQKIDRIMEKFAERYCKCNPKAFSSADTAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPE 783 (1780)
T ss_pred HhCCCCchHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHhhCCCCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccCCccCCCCC--CCChhHHHH-----------------------HHhh---------ccCCCCc
Q 000513 723 EYLAELYHSICENEILMIPEQGAGSP--VMTSSRWIN-----------------------VLHK---------SREATPF 768 (1453)
Q Consensus 723 ~~L~~iy~~I~~~~i~~~~e~~~~~~--~~~~~~w~~-----------------------ll~~---------s~~~~~~ 768 (1453)
|||++||++|+++||+|++|+..... .+...+|.. ++++ .+..+.|
T Consensus 784 e~L~~iY~~I~~~ei~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~e~~~~~s~~l~~~~~~~~k~~~~~~~~~f 863 (1780)
T PLN03076 784 EFMRSLYERISKNEIKMKEDDLVPQQKQSANSNRILGLDSILNIVIRKRGEDSYMETSDDLIKHMQEQFKEKARKSESVY 863 (1780)
T ss_pred HHHHHHHHHHHhCcccCcccccccccccccccchhhhhHHHHhHhhHHHHHHHHHHhHHHHHHHHHHHHHHhhccccCce
Confidence 99999999999999999988532211 111111110 1111 0123345
Q ss_pred eeccccccchHHHHHhchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHhccCCCccch
Q 000513 769 IVCDSRALLDHDMFIILSGPTVAAMSVIFDQVEREDVLQRCVDGFLAVAKLSTFYHFGDILDDLVVSVCKFTTLLTPLSV 848 (1453)
Q Consensus 769 ~~~~~~~~~~~~mf~~~w~~ilaals~~f~~a~D~~i~~~~L~g~~~~a~ia~~~~l~~~~D~~l~~L~k~t~l~~~~~v 848 (1453)
+.. ....+.++||+.+|+|+++|||.+|+.++|+++++.||+||+.|++||++|||+++||+||.+|||||++.+|.++
T Consensus 864 ~~a-~~~~~~~~mfe~~W~p~laalS~~~~~s~d~~~~~~cL~G~~~~i~ia~~f~l~~~rdafv~~L~kfT~L~~~~em 942 (1780)
T PLN03076 864 YAA-TDVVILRFMVEVCWAPMLAAFSVPLDQSDDEVVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTSLHSPADI 942 (1780)
T ss_pred eec-chHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHcCCCChhhh
Confidence 433 3334579999999999999999999999999999999999999999999999999999999999999999988665
Q ss_pred hHHHHhhCCChHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHcCCCCccccccccCCCCCCCcccccCcCCCCcc
Q 000513 849 EEAVLALGDDTKARMALTTLFTIANRYGDYIHSGWKNILDCVLSLHKLGLLPARLVSDAADDMEPSSDQEQEKPATSSVS 928 (1453)
Q Consensus 849 ~~~~v~fG~~~K~~la~~~Lf~ia~~~G~~L~~sW~~Il~~i~~L~~~~Llp~~~~~~~~~~~~~~~~~~~~k~~~~sl~ 928 (1453)
. .||+.|+++||.||+.+|++|++||++||+|+++|++++|++.++.+|......+.+...+++.... ..
T Consensus 943 k---------~Knv~Aik~ll~ia~~~Gn~L~~sW~~IL~cISqLerl~Li~~gv~~d~~~~~~~~~~~~~~~~~~~-~~ 1012 (1780)
T PLN03076 943 K---------QKNIDAIKAIVSIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAAPQNESDKSKQAKS-PI 1012 (1780)
T ss_pred h---------HHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHhhcCCCcchhhhccccccccccccccc-cc
Confidence 5 5999999999999999999999999999999999999999999886653322221111111110000 00
Q ss_pred cCCCCCCCCC--C-CCCccccccccccc-cCCCCCCCCCCHHHHHHhhh---hHhHHHhhchhhhhhccccCCHHHHHHH
Q 000513 929 TSHVTPVATP--R-KSSSLIGRFSQLLS-FDMEEPRLQPSEEELAAHQR---TRDIIQNCHIDSIFSESKFLQAESLLDL 1001 (1453)
Q Consensus 929 ~~~~~~~~~~--~-~~sgllS~fss~ls-~~~~e~~~~pt~eei~~~~~---a~~cI~~~~i~~LF~~s~~L~~esL~~l 1001 (1453)
-|...+.+.. + ..+++.. .++-+ ..+.+....++.+++..... ..+.|.+|.+++||++|++|+.+|+.+|
T Consensus 1013 ~p~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~idkIF~~S~~L~~eai~~f 1090 (1780)
T PLN03076 1013 LPVLKRKGPGKLQYAAAAVRR--GSYDSAGVGGKASGVVTSEQMNNLVSNLNMLEQVGSFEMNRIFTRSQKLNSEAIIDF 1090 (1780)
T ss_pred ccccccccccccchhhhhhcc--cccccccccccccccCCHHHHHHHHhhhhhhhhhhhhHHHHHHHhcccCCHHHHHHH
Confidence 0000000000 0 0000110 00100 00112234567777765432 3456778899999999999999999999
Q ss_pred HHHHHHHhhhhccCCCCCCCCCchhhHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHhccCCC--hhHHHHHHHHHHHHH
Q 000513 1002 VKALILASGRLRKGSSSGEDEDTGVFCLELLIAITLNNRDRIMLIWHGVYEHIANIVQSTVMP--SMLVEKAVFGLLRIC 1079 (1453)
Q Consensus 1002 I~aL~~~s~~~~~~~~s~~~e~~~~F~Le~lv~v~l~N~~Ri~~~W~~v~~hL~~i~~~~~~~--~~l~erAv~~LlrL~ 1079 (1453)
++|||++|.++... .++|++|+|++|++|+++||+|++.+|+.+|+++.+++.....+ ..++..|+++|.+++
T Consensus 1091 v~AL~~vS~eEl~~-----~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs 1165 (1780)
T PLN03076 1091 VKALCKVSMEELRS-----PSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLS 1165 (1780)
T ss_pred HHHHHHhhHHHHcc-----CCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHH
Confidence 99999999887754 24789999999999999999999999999999887765442211 346777888999999
Q ss_pred HHhccCch----hHHHHHHHHHHHHHccCHHHHHHhhhHHHHHHHHHHhccCCCccCCcChHHHHHHHhhhh--cCCcch
Q 000513 1080 QRLLPYKE----NLTEELLKSLQLILKLDARVADAYCEPITQEVMRLVKANSTHIRSHVGWRTIISLLSITA--RHPEAS 1153 (1453)
Q Consensus 1080 ~~ll~~~e----~l~~~ll~~L~~L~~l~~~v~~~~~~~Il~~L~~Ll~~~~~~L~s~~gW~~If~iL~~~a--~~~~~~ 1153 (1453)
+++++++| .+|+++|+||+.++.-.. ..++++.|++|+.+|+++++++|+| ||++||++|+.++ ++++.+
T Consensus 1166 ~kfle~eEL~~f~FQkefLkPfe~im~~s~--~~eVrE~ILeCv~qmI~s~~~nIkS--GWktIF~VLs~aa~d~~e~iV 1241 (1780)
T PLN03076 1166 MKFLEREELANYNFQNEFMKPFVIVMRKSN--AVEIRELIIRCVSQMVLSRVNNVKS--GWKSMFMVFTTAAYDDHKNIV 1241 (1780)
T ss_pred HHhcchhhhhchhHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHhCccHHHH
Confidence 99998665 579999999999987543 2378999999999999999999999 9999999999876 466789
Q ss_pred hhHHHHHHHHHhhc-ccCC---hhhHHHHHHHHHHHHhcccchhhhHHHHHHHHHHhHHHHHhhchhh--h----h----
Q 000513 1154 EAGFEALAFIMSEA-AHLL---PSNFILCVDAARQFAESRVGEVDRSVSALELMAGSVVSLVRWSSEA--K----N---- 1219 (1453)
Q Consensus 1154 ~~aFe~L~lIi~d~-~~L~---~~n~~~~V~~L~~F~~q~~~~~~~S~~AldlL~~~~~~l~~~~~~~--~----~---- 1219 (1453)
+.||+++++|++|+ ..++ +++|.+||+||.+|+.|+.+ .|+|++||++||.+.+.+.+-.... . .
T Consensus 1242 ~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~-~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~ 1320 (1780)
T PLN03076 1242 LLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFN-KDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPS 1320 (1780)
T ss_pred HHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCc-ccccHHHHHHHHHHHHHHHhccccccccccccccccc
Confidence 99999999999995 4455 69999999999999999877 6999999999999877764321100 0 0
Q ss_pred -----hcchhHHh--hhhhhhHhhHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHhHhhH
Q 000513 1220 -----AVGEEAAI--KLSQDIGEMWLRLVQGLKKVCLDQREEVRNHAVLALQRSLAAVDGIRLPNALWFQCFDMVIFTLL 1292 (1453)
Q Consensus 1220 -----~~~~~~l~--~~~~~~~~lW~pLL~~La~lc~D~R~EVR~~AiqtLfr~L~~~~g~~l~~~~W~~~f~~VLFPLL 1292 (1453)
....++.. ...+....+|+|||.+|+++|+|+|+|||++|++||||+|. .||..|+++.|+.||+.|||||+
T Consensus 1321 ~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~-~yG~~Fs~~~W~~if~~VLFPIF 1399 (1780)
T PLN03076 1321 SPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLR-NHGHLFSLPLWERVFESVLFPIF 1399 (1780)
T ss_pred cccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-HhhccCCHHHHHHHHHHHHHHHH
Confidence 00000000 11233457999999999999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHhhh--------------CCCccccch-hHHHHHHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHHhhh
Q 000513 1293 DDLLEIAQA--------------SSPKDYRNI-DGTLVLAMKLMSKAFLQQLQDLSQQPSFCKLWLGVLDHMDKYMKLKL 1357 (1453)
Q Consensus 1293 ~~l~~~~~~--------------~s~~d~~~~-~ET~~lal~lLskvFl~~l~~L~~~~~F~~lW~~iLd~l~~~~~~~~ 1357 (1453)
+.+...... ++..+.+.| .||+++|+++++.+|.+||+.|. .+..++|+.+..|+..
T Consensus 1400 d~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~------~~L~~~l~ll~~ci~q-- 1471 (1780)
T PLN03076 1400 DYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVN------PLLKKVLMLLVSFIKR-- 1471 (1780)
T ss_pred HHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHcC--
Confidence 998643211 112355668 59999999999999999998764 3678888888999872
Q ss_pred cCCCchhHhhHHHHHHHHHHHhhhhcCCcCCCCCCCccchHHHHHHHHHHhchhhccC
Q 000513 1358 RGKRSDKIHELIPELLKNNLLVMKTTGILLPTDDIGGDSFWQLTWLHVKKISPSMQSE 1415 (1453)
Q Consensus 1358 ~~~~s~~l~Eav~esLKN~Llvm~~~g~l~~~~~~~~~~lW~~Tw~~i~~~~P~L~~e 1415 (1453)
.++.++.....+|+++++. .+..|.+ +-|+.+...+.+++-.-.+.
T Consensus 1472 ---~n~~la~ig~~~l~~li~~--ng~~F~~-------~~W~~i~~~~~~lf~~T~p~ 1517 (1780)
T PLN03076 1472 ---PHQSLAGIGIAAFVRLMSN--AGHLFSD-------EKWLEVVLSLKEAANATLPD 1517 (1780)
T ss_pred ---chHHHHHHHHHHHHHHHHH--hhccCCH-------HHHHHHHHHHHHHHHHhCCc
Confidence 3788999999999998855 4444433 56888877777766555444
No 3
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-131 Score=1254.80 Aligned_cols=1212 Identities=25% Similarity=0.397 Sum_probs=925.2
Q ss_pred cCCCCChhhhhHHHHHHhccCCCCcchHHHHHHHHHHHHhcCCcCCCCcch----HHHHHHHHHHHhcccccccCCCchH
Q 000513 86 QWHKVDPAVYLQPFLDVIQSDETGAPITGVALSSVYKILILDVLDLDTVNV----GEAMHLIVEAVTSCRFEVTDPASEE 161 (1453)
Q Consensus 86 ~~~~~d~~~~l~PFl~vi~s~~t~~~iT~~AL~sl~kfl~~~~i~~~s~~~----~~a~~~i~~avt~crfe~td~~sDe 161 (1453)
++...|+..+++||.++|.++ +.+|+..|++|+||++.||.+..++... ..-+..++++||.|. + ..||
T Consensus 37 ~~~~~~~e~~~~p~~la~~t~--~~ki~~~~~dc~~kli~~~~l~g~~~~~~~~~~~l~~~~~~~vc~~~-~----~~~e 109 (1514)
T KOG0929|consen 37 GLSLAEAELYLLPFELACDTK--SPKIVSPALDCLQKLIAYGHLTGESNDSGGPEDLLIDKIIEAVCKCF-D----GLDE 109 (1514)
T ss_pred cCCCcchhhhhChHHhhcCCC--CcchhccHHHHHHHHHHhhhccCCCCCCCCcchhHHHHHHhHhhhcc-C----CCch
Confidence 467789999999999999999 7999999999999999999987765432 345799999999983 2 2299
Q ss_pred HHHHHHHHHHHHHHccccccccChHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHccCCCCcccccccccC
Q 000513 162 VVLMKILQVLLACMKSKAAVKLSNQHVCNIVNTCFRVVHQASSKGELLQRIARQTMHELVRCIFSHLPHIDCLEQSSALG 241 (1453)
Q Consensus 162 ~VllkiLq~l~~~~~~~~g~~l~~~~v~~~l~~c~~l~~q~~~~se~lr~tAe~tl~~iv~~vF~rl~~~~~~~~~~~~~ 241 (1453)
.++++++.+|.+.|.++. ..++|+++..++++||.++. ++ ++-+.+|.+||.||+..||.|...-..++......
T Consensus 110 ~~elq~~k~lL~av~s~~-~~i~~~~ll~~vr~c~~iyl--~s--~~nq~~ak~~L~qml~~vf~~~e~~~~~~~~i~vs 184 (1514)
T KOG0929|consen 110 SVELQVLKALLAAVTSQH-IEIHGDSLLLIVRTCYNIYL--GS--PINQTTAKATLTQMLNIVFRRMEEDSSDESQILVS 184 (1514)
T ss_pred hhhHhHHHHHHHHHhccc-eeecCcchHHHHHHHHHHHh--cC--cccchHHHHHHHHHHHHHHHHhhhccCcccccccc
Confidence 999999999999999876 67999999999999999998 33 88999999999999999999997432221110000
Q ss_pred CCCCCCCCcccccc----------cccCCCCCCCCCCCccccCC--CCccccC---CCCcccccCCCCCC--cccccCCC
Q 000513 242 SRSDNGNKVGLMEK----------EITSGSKPLENGNVSVERDG--QSSVEAN---NGETTVEMGSTENG--EKIMMEPF 304 (1453)
Q Consensus 242 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~--~~~~~~py 304 (1453)
+.......+.++.. ..... +...+......+. .+..... ..+.....+.+... ......+.
T Consensus 185 ~~~~~~~~~~s~~~~~~~i~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (1514)
T KOG0929|consen 185 ELLRVSDDPSSTEFVQQFIDSIMEVLVAS--PEDVGLTEMLDDNVNENSKTGDSLSLRDAESPESESERDDDSERSSQNK 262 (1514)
T ss_pred cccccCCCcchhHHHHHHHHHHHHhccCC--ccccccccccccccccccccCcccccCcccccccccccCcchhhccccH
Confidence 00000001111000 00000 0000000000000 0000000 00000000000000 11122244
Q ss_pred ChhHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCchHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhhcC
Q 000513 305 GVPCMVEIFHFLCSLLNAIENMGIGPRGNPIADDEDVPLFALSLINSAIELGGSSIGKYPRLLVLIQDELFRYLMQFGLS 384 (1453)
Q Consensus 305 gl~~~~~lf~~L~sL~~~~~~~~~~~~~n~~~~~~~~~~~~L~Li~~~le~~g~~~~~~p~l~~li~d~lc~~Ll~~~~s 384 (1453)
...-+..+||-||.|.....+.. ..++..+ -+.++++|+|+..+++++|+.|..+..|+..+|.+||-+|.++..|
T Consensus 263 ~~~Daflvfr~Lckls~k~~s~~---~~d~~s~-~R~k~lsl~ll~~il~~~~~vf~s~~~fi~aikqyKOGalskn~vS 338 (1514)
T KOG0929|consen 263 LQRDAFLVFRALCKLSMKPLSSE---ESDTQSH-MRSKLLSLELLKSILENSGSVFRSNEHFIDAIKQYLCLALSKNSVS 338 (1514)
T ss_pred HHHhHHHHHHHHHHhhCCCCCCC---CCChHHH-HhhhHHHHHHHHHHHhccchhhcCchhhHHHHHHHHHHHHhhcccc
Confidence 45556889999999976443321 1122223 5668999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcChhHHHHHHHccCCCCC
Q 000513 385 MSPLILSTVCSIVLNLYHHLRVELKAQLEAFFSCVLLRLAQSKHGSSYQQQEVAMEALVDLCRQQSFMSEMYANFDCDIT 464 (1453)
Q Consensus 385 ~~~~i~~~slri~~~L~~~~r~~Lk~qlE~fl~~l~~~l~~~~~~~~~~~r~l~LE~l~~l~~~p~~~~~lf~NYDCd~~ 464 (1453)
..+++|+++|.||..|+..+|.|+|.|+|+|++.++.++++... ++++|+.+.|..+..+|.+|+.++++|+|||||.+
T Consensus 339 ~~~~vfe~s~~If~~lls~~r~~~K~ei~vff~~i~~~ile~~t-~s~~qk~~~l~~~~~ic~d~q~~Vdi~vnydcd~~ 417 (1514)
T KOG0929|consen 339 NVPMVFELSCTIFVSLLSNFRTHLKAEIEVFFSEIFLRILENNT-SSFQQKMMVLRILTRICADPQTLVDIYVNYDCDSN 417 (1514)
T ss_pred cchHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhcCC-CcccchhHHHHHHhhhcCCCccccccccCCccccC
Confidence 99999999999999999999999999999999999999999877 48999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhccCCCCC------Cc--hhhhHHHHHHHHHHHHHHHHhhhcCCC-CCCCCC-CCc-ccc-cccccc
Q 000513 465 CGNLFEDLTNLLSKSAFPVNG------PL--SAMHVLALDGMISMVQGMAERISNEFP-APEGAT-VDP-EEY-NAFWTL 532 (1453)
Q Consensus 465 ~~nlfe~l~~~L~k~~~p~~~------~~--~~~~~l~L~~l~~~i~~i~~~~~~~~~-~~~~~~-~~~-~~~-~~~~~~ 532 (1453)
..||||++++.++|.+....+ |. ..++.-++.||.++.+++..|.++... ....++ ... ... ......
T Consensus 418 ~~nifer~v~~ltk~a~g~~~s~~~~~P~~~~~~~~~s~kcL~s~l~s~s~w~~~~~~~~~~~t~~~~~~~~~~~~~~s~ 497 (1514)
T KOG0929|consen 418 SQNIFERLVNGLSKIAQGRTGSNLELSPVQELALRLKSLKCLVSILKSMSGWNDNQLNVEGVITGKKSSTTPIENELNSD 497 (1514)
T ss_pred CccHHHHHHhhHHHhhcCCCccccCCCCchhhhHhhhhhhhHHHHHHhhhhhccccccCCCcccCccccCcchhhhccCc
Confidence 999999999999999965211 21 245667899999999999999885211 000000 000 000 000000
Q ss_pred c-CCCCCCCCCchHHHHHHHHHHHHHHHHHhhhcCChhhhHHHHHhCCCCCCCCChHHHHHHhhhcCCCCHHHHHhhhcC
Q 000513 533 K-CSDYSDPNNWIPFVRKMKYIKRKLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGDFLGN 611 (1453)
Q Consensus 533 ~-~~~~~~~~~~~~~l~~~k~~K~~~~~~~~~Fn~~pk~gi~~l~~~~~~~~~~~~~~ia~fl~~~~~l~k~~ige~l~~ 611 (1453)
. ....++| +..+..|.+|. +.+|+..||.+||+||+||+++|++.+ +|.++|+||+.+.+|||+++|+|||+
T Consensus 498 ~~~~~~~~~----~q~e~~k~ek~-l~~~i~~fN~kpkkgi~~l~s~~~v~~--sp~eiaeFL~~t~~l~kt~igdyLGe 570 (1514)
T KOG0929|consen 498 TQSNDADDP----EQFEALKSEKQ-LQEGIQLFNGKPKKGISFLDSKGTVGT--SPLEIAEFLIGTEGLSKTILGDYLGE 570 (1514)
T ss_pred cccccccCh----hhhhhhhhhcc-hHHHHHHhccCCccCchhhhhcCCCCC--CHHHHHHHHHhccCCCHHHHHHHhcC
Confidence 0 0001112 34667788888 899999999999999999999999986 89999999999999999999999999
Q ss_pred CChhhHHHHHHHHhcCCCCCCChHHHHHHHHccccCCCchhHHHHHHHHHHHHHHhhCCC-CCCChhhHHHHHHHHHHhh
Q 000513 612 HDEFCVQVLHEFAGTFNFRGMNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYEQSSD-ILSDKDAALLLSYSLILLN 690 (1453)
Q Consensus 612 ~~~~~~~vl~~f~~~fdf~~~~i~~alR~~l~~frlPgE~q~Idri~e~Fa~~y~~~n~~-~~~~~d~~~~l~~siimLn 690 (1453)
.++||.+||++|++.|||++++|++|||.||..||||||+|+|||||++||++||+|||+ .|.|+|+||+||||+||||
T Consensus 571 ~d~~~~~VMhayVd~~dF~~~~~~~ALR~fL~~frLPgEaQkIDRiM~kFS~ry~~cNP~~lFssADtaYVLAfSlIMLn 650 (1514)
T KOG0929|consen 571 DDDFNKAVMHAYVDLFDFKNMSLVEALRKFLEGFRLPGEAQKIDRLMEKFSERYCKCNPGTLFSSADTAYVLAFSLIMLN 650 (1514)
T ss_pred CcchhHHHHHHHHHhhCcCCCcHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhcCCCccCCCccchHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hcccChhhhccCCHHHHHHhhcccCCCCCCCHHHHHHHHHHhhhcccccCCccCCCCC-CC----------------Chh
Q 000513 691 TDQHNAQVKKKMTEEDFIRNNRSINGGKDLPREYLAELYHSICENEILMIPEQGAGSP-VM----------------TSS 753 (1453)
Q Consensus 691 tdlhn~~~k~~mt~~~F~~n~~~~~~~~d~~~~~L~~iy~~I~~~~i~~~~e~~~~~~-~~----------------~~~ 753 (1453)
||+|||++|+|||++||++|+||+|+|+|+|++||+.+|+.|..+||+|.++++.... +. .+.
T Consensus 651 TDlHnp~vKnKMTK~dFI~nnrgind~~dlp~e~L~~lYd~I~~~Eikm~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~ 730 (1514)
T KOG0929|consen 651 TDLHNPNVKNKMTKADFIRNNRGINDGKDLPEEYLEALYDEIEYKEIKMKSDSLLPISSESSNLPKLLGLTGILNLRSNS 730 (1514)
T ss_pred ccccCchhhccccHHHHHHhcccccCcccChHHHHHHHHHHhhhccccccccccccccCCCCcchhhhccccccccchhh
Confidence 9999999999999999999999999999999999999999999999999887543110 00 011
Q ss_pred HHHH--------HH-hhc-cCCCCceeccccccchHHHHHhchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhc
Q 000513 754 RWIN--------VL-HKS-REATPFIVCDSRALLDHDMFIILSGPTVAAMSVIFDQVEREDVLQRCVDGFLAVAKLSTFY 823 (1453)
Q Consensus 754 ~w~~--------ll-~~s-~~~~~~~~~~~~~~~~~~mf~~~w~~ilaals~~f~~a~D~~i~~~~L~g~~~~a~ia~~~ 823 (1453)
++.. .+ .+. ...+.|.......+ -+.||+.+|.|+++|++.-|+.++|..+...|++||+.+.+|++.+
T Consensus 731 r~~~~~~s~~~~~~~e~~s~~~s~~~~ath~~~-Vr~m~e~~W~p~laafs~~~~~sdd~~~~n~cl~g~r~ai~ia~~f 809 (1514)
T KOG0929|consen 731 RMSAIDMSASQSQLKEKGSLSESVFYSATHLIS-VRPMFESLWTPMLAAFSVGLQDSDDLEIANLCLDGFRLAISIASIF 809 (1514)
T ss_pred hhhHHHhhhhHHHHHHhcccccccceeccccee-eeccccccccchhhhhchhhhcCCccccccccccchhheeeehhhh
Confidence 1110 11 111 12344443333223 3899999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHhccCCCccchhHHHHhhCCChHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHcCCCCccc
Q 000513 824 HFGDILDDLVVSVCKFTTLLTPLSVEEAVLALGDDTKARMALTTLFTIANRYGDYIHSGWKNILDCVLSLHKLGLLPARL 903 (1453)
Q Consensus 824 ~l~~~~D~~l~~L~k~t~l~~~~~v~~~~v~fG~~~K~~la~~~Lf~ia~~~G~~L~~sW~~Il~~i~~L~~~~Llp~~~ 903 (1453)
+++..+|+|+.+|.+||.+..+..+. .|+..+++++..|+...|+++.++|+.|+.|+.++++.++++.+.
T Consensus 810 ~~~~~rdAfv~al~~ft~l~~~~e~k---------~kNi~aik~l~~ia~t~gn~l~~sW~~Il~cisqlE~~qli~sg~ 880 (1514)
T KOG0929|consen 810 SMELGRDAFVQALARFTNLHAPSEMK---------QKNIDAIKALLEIADTDGNKLFDSWLDILKCISQLEHTQLIGSGS 880 (1514)
T ss_pred cCCccccHHHHHHHHHHhccCHHHHh---------HhhHHHHHHHHHHhhcccchhHhHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998775544 699999999999999999999999999999999999999999887
Q ss_pred cccccCCCCCCCcccccCcCCCCcccCCCCCCCCCCCCCccccccccccccCCCCCCCCCCHHHHHHhhhhHhHHHhhch
Q 000513 904 VSDAADDMEPSSDQEQEKPATSSVSTSHVTPVATPRKSSSLIGRFSQLLSFDMEEPRLQPSEEELAAHQRTRDIIQNCHI 983 (1453)
Q Consensus 904 ~~~~~~~~~~~~~~~~~k~~~~sl~~~~~~~~~~~~~~sgllS~fss~ls~~~~e~~~~pt~eei~~~~~a~~cI~~~~i 983 (1453)
..+...+... .++ ....++++. -.++..++.. . .....++. -| .++
T Consensus 881 ~~~~~~~~~s------~~~-----------~~~~~~~~~-~~~~~~s~~e-----~--~~~~~s~s-------~v--i~~ 926 (1514)
T KOG0929|consen 881 PPNKLPFVVS------QRE-----------DYKKPGGSY-DSSGDGSRIE-----N--VGEKSSVS-------VV--IQM 926 (1514)
T ss_pred CcccCcchhh------hch-----------hccCCcccc-cccccccchh-----c--cccchhHH-------HH--HHh
Confidence 6654333211 000 000010000 0000011100 0 00111111 11 247
Q ss_pred hhhhhccccCCHHHHHHHHHHHHHHhhhhccCCCCCCCCCchhhHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHhccCC
Q 000513 984 DSIFSESKFLQAESLLDLVKALILASGRLRKGSSSGEDEDTGVFCLELLIAITLNNRDRIMLIWHGVYEHIANIVQSTVM 1063 (1453)
Q Consensus 984 ~~LF~~s~~L~~esL~~lI~aL~~~s~~~~~~~~s~~~e~~~~F~Le~lv~v~l~N~~Ri~~~W~~v~~hL~~i~~~~~~ 1063 (1453)
++||+++..++.+++..|+++||+++.++... ...|++|.++|+++|+.+||.||+..|..+|..+.+.+.....
T Consensus 927 d~Ift~S~~l~~eaIv~FvkaLc~vs~~eL~s-----~~~PrlfslqK~VeIs~ynM~rIrl~ws~iw~vlg~~F~~vg~ 1001 (1514)
T KOG0929|consen 927 DRIFTSSQRLDSEAIVDFVKALCKVSMDELLS-----PSTPRLFSLQKLVEISYYNMNRIRLVWSRIWAVLGEFFVSVGC 1001 (1514)
T ss_pred hhhhcccccCCchHHHHHHHHHHHHHHHHhcC-----CCCCCeeecccceeeeccccccchhhHHHHHHHhhhhhhcccc
Confidence 99999999999999999999999999887654 2679999999999999999999999999999888766544321
Q ss_pred Ch--hHHHHHHHHHHHHHHHhccCch----hHHHHHHHHHHHHHccCHHHHHHhhhHHHHHHHHHHhccCCCccCCcChH
Q 000513 1064 PS--MLVEKAVFGLLRICQRLLPYKE----NLTEELLKSLQLILKLDARVADAYCEPITQEVMRLVKANSTHIRSHVGWR 1137 (1453)
Q Consensus 1064 ~~--~l~erAv~~LlrL~~~ll~~~e----~l~~~ll~~L~~L~~l~~~v~~~~~~~Il~~L~~Ll~~~~~~L~s~~gW~ 1137 (1453)
.. .+.--|++++.++..+++...| .+|.++++|+..++.-+..+ ++++.|++|+. +++++ ||+
T Consensus 1002 ~~n~~vaifa~DslRQlsmkfle~~el~~f~Fq~~fl~Pfe~im~~s~s~--~Irelv~rC~~-------~nikS--GWk 1070 (1514)
T KOG0929|consen 1002 NSNESVAIFALDSLRQLSMKFLERSELDNFRFQKDFLRPFEHIMKRSSSA--EIRELVVRCIS-------SNIKS--GWK 1070 (1514)
T ss_pred CCCCceEEEehhhhHHhhhhhcchhhhhhhhHHHhhcCcchHHhhccCcc--hhHHHHHhhhh-------hhhhh--hhh
Confidence 11 1222256677889888885333 35889999999998876432 57788888887 68888 999
Q ss_pred HHHHHHhhhhcCC--cchhhHHHHHHHHHhhc-ccCCh---hhHHHHHHHHHHHHhcccchhhhHHHHHHHHHHhHHHHH
Q 000513 1138 TIISLLSITARHP--EASEAGFEALAFIMSEA-AHLLP---SNFILCVDAARQFAESRVGEVDRSVSALELMAGSVVSLV 1211 (1453)
Q Consensus 1138 ~If~iL~~~a~~~--~~~~~aFe~L~lIi~d~-~~L~~---~n~~~~V~~L~~F~~q~~~~~~~S~~AldlL~~~~~~l~ 1211 (1453)
.||+++..+|... +.+..+|+.+..++++. .++.+ +.|.+|+.|+.+|+.+... .++++.||.+++.++..+.
T Consensus 1071 ~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~F~~~~~~-~~~s~~aI~~lr~ca~k~~ 1149 (1514)
T KOG0929|consen 1071 NIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEEFTKNLGF-PDDSLNAIRFLRLCALKLA 1149 (1514)
T ss_pred HHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHhc
Confidence 9999999998654 46889999999999884 66655 8999999999999997654 4899999999998877654
Q ss_pred hh--chhhhhhcchhHHhhhhhhhHhhHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHhH
Q 000513 1212 RW--SSEAKNAVGEEAAIKLSQDIGEMWLRLVQGLKKVCLDQREEVRNHAVLALQRSLAAVDGIRLPNALWFQCFDMVIF 1289 (1453)
Q Consensus 1212 ~~--~~~~~~~~~~~~l~~~~~~~~~lW~pLL~~La~lc~D~R~EVR~~AiqtLfr~L~~~~g~~l~~~~W~~~f~~VLF 1289 (1453)
.- ....+ .+... ....|..+|.|++.++..++.|+|.+||..|++.+|.++. .||+.|...+|+.+|. +||
T Consensus 1150 e~~~~~~~~--~~~~~---~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~-~~g~~F~~~~We~v~~-~~f 1222 (1514)
T KOG0929|consen 1150 EGVYNEKLK--VGKDS---EFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILK-EHGDDFSKEFWEDVFR-ILF 1222 (1514)
T ss_pred cccchhhcc--ccccc---ccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHH-hhhhhccHHHHHHHHH-hee
Confidence 31 11001 00000 1345889999999999999999999999999999999999 9999999999999999 999
Q ss_pred hhHHHHHHHhhhCCCccccchhHHHHHHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHHhhhcCCCchhHhhHH
Q 000513 1290 TLLDDLLEIAQASSPKDYRNIDGTLVLAMKLMSKAFLQQLQDLSQQPSFCKLWLGVLDHMDKYMKLKLRGKRSDKIHELI 1369 (1453)
Q Consensus 1290 PLL~~l~~~~~~~s~~d~~~~~ET~~lal~lLskvFl~~l~~L~~~~~F~~lW~~iLd~l~~~~~~~~~~~~s~~l~Eav 1369 (1453)
|+++.+..+....... .|+.+|+++|+..++.+|.+|+..+. .+...++..+..|++. + .+.+.-+.
T Consensus 1223 pIF~~~~~~~~~~~~~--eW~~tT~~~Al~~~v~lf~~~~~~l~------~lL~~~~~ll~~ci~~----~-n~~la~~g 1289 (1514)
T KOG0929|consen 1223 PIFDNVKLDEDESEKD--EWLSTTCNHALQALVDLFTQFFKQLN------NLLPKVLGLLVGCIKQ----D-NQQLARIG 1289 (1514)
T ss_pred ecccccCcccchhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcC----c-chhhHHhH
Confidence 9999996544332222 38999999999999999999999875 3677888888889882 2 56788888
Q ss_pred HHHHHHHHHhhhhcCCcCCCCCCCccchHHHHHHHHHHhchhhc
Q 000513 1370 PELLKNNLLVMKTTGILLPTDDIGGDSFWQLTWLHVKKISPSMQ 1413 (1453)
Q Consensus 1370 ~esLKN~Llvm~~~g~l~~~~~~~~~~lW~~Tw~~i~~~~P~L~ 1413 (1453)
.++|-+++.. .+.-|.. .-|+++..-+...+..-.
T Consensus 1290 ~~cl~~l~~~--n~~~fse-------~~Wde~~~~~~e~~~~T~ 1324 (1514)
T KOG0929|consen 1290 TSCLLQLVSS--NGEKFSE-------EDWDEICNCILEAFKTTL 1324 (1514)
T ss_pred HHHHHHHHHh--cccccCH-------hhHHHHHHHHHHHHHhcC
Confidence 8888887754 2233322 469999888877665433
No 4
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=100.00 E-value=9.9e-67 Score=662.26 Aligned_cols=836 Identities=22% Similarity=0.267 Sum_probs=568.2
Q ss_pred HHHhCCCCCCCchHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 000513 352 AIELGGSSIGKYPRLLVLIQDELFRYLMQFGLSMSPLILSTVCSIVLNLYHHLRVELKAQLEAFFSCVLLRLAQSKHGSS 431 (1453)
Q Consensus 352 ~le~~g~~~~~~p~l~~li~d~lc~~Ll~~~~s~~~~i~~~slri~~~L~~~~r~~Lk~qlE~fl~~l~~~l~~~~~~~~ 431 (1453)
++.+.++.+..|+.|+.++...+|..+.+..++.-.++++.++.++..++..++.+.+.+.+.|+..++..+..... .+
T Consensus 31 ~l~~~~~~l~~~~~l~~~~~~~~~l~~~~~a~s~~~~v~~v~~~i~~~~~~~~~~~f~~~~~~~f~s~~f~i~~~~~-~s 109 (1024)
T COG5307 31 SLPVSYSILRDFKLLLDLLFPYLRLKLSLSARSPLLPVFEVGLEIIGLRLSNLPKLFKLESSVFFISIYFPISHTTS-TS 109 (1024)
T ss_pred cccchHHHhccchHHHHHhcchhhhhhhhcccccchhhhhhhHHHHHHHHhhhhhhhhhccchHHHHHhhhhhcccc-cc
Confidence 33344444566679999999999999999999999999999999999999999999999999999999888876543 34
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHHHHccCCCCC--------------------CCchHHHHHHHHHhccCCCCC------
Q 000513 432 YQQQEVAMEALVDLCRQQSFMSEMYANFDCDIT--------------------CGNLFEDLTNLLSKSAFPVNG------ 485 (1453)
Q Consensus 432 ~~~r~l~LE~l~~l~~~p~~~~~lf~NYDCd~~--------------------~~nlfe~l~~~L~k~~~p~~~------ 485 (1453)
..|+.+-|-.....|..|+ +++|+||||... -+...+-++..++..--+.+.
T Consensus 110 ~~q~~~~l~~~~~~~~~~r--l~~~i~~d~~~~~~~~~~~~~~~~~s~~~t~~p~~~~~~~~e~~~~~~~~~~~~~~~~~ 187 (1024)
T COG5307 110 LQQKSSELSTSQVVILLSR--LERYINYDVGRGFMENITERTAFPLSRPSTNDPPETRSLIIEQLSILWISSPYFFLTLI 187 (1024)
T ss_pred hhhhhHHhHhhhhhhcccc--hhhhcccccccccchhhhhccCCccccccccCCCcchhhhhhhhhhcCCCCCccccccc
Confidence 4455555555555555555 566666666533 123344444444432110000
Q ss_pred CchhhhHHHHHHHHHHHHHHHHhhhcC---------CCCCCCCCC--Cccccccccccc--CCCCCCCCCchHHHHHHHH
Q 000513 486 PLSAMHVLALDGMISMVQGMAERISNE---------FPAPEGATV--DPEEYNAFWTLK--CSDYSDPNNWIPFVRKMKY 552 (1453)
Q Consensus 486 ~~~~~~~l~L~~l~~~i~~i~~~~~~~---------~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~k~ 552 (1453)
+-....+...++.+++++++.+..-.. +..+..+.. ..+.+.++.+.. .++..-+.... .....|+
T Consensus 188 ~~~q~~~~~~~~~is~l~~l~~~sl~~s~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~-~~~~~k~ 266 (1024)
T COG5307 188 SDFQCDLDSSDCSISFLKGLTKNSLVPSAYYTNKDVPPLSGEGLVSGSKSMVNSMKNSSRDSSSFVNSDSSI-VNLGIKK 266 (1024)
T ss_pred cchhhhhHHHHHHHHHHHHHhhcccchhhhhcccCCCCcccchhhhcCCcccccccccccChhhhccchHHH-hhhcccc
Confidence 001223344555555555544111000 000000000 000001111000 00000001111 2345789
Q ss_pred HHHHHHHHHhhhcCChhhhHHHHHhCCCCCCCCChHHHHHHhhhcC-CCCHHHHHhhhcCCChhhHHHHHHHHhcCCCCC
Q 000513 553 IKRKLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTV-GLDKNLIGDFLGNHDEFCVQVLHEFAGTFNFRG 631 (1453)
Q Consensus 553 ~K~~~~~~~~~Fn~~pk~gi~~l~~~~~~~~~~~~~~ia~fl~~~~-~l~k~~ige~l~~~~~~~~~vl~~f~~~fdf~~ 631 (1453)
+|+.+++|++.||.+|++||..|.+.++++ +.++.++|.||..+. ++||+.+|+|||+++..|..||++|+++|||+|
T Consensus 267 rkt~~~e~~~~fn~kp~~gi~~l~~~~~i~-~d~~~sia~~L~~~~~~l~k~~lg~~L~~~~~kn~~vL~~Fi~~fdFk~ 345 (1024)
T COG5307 267 RKTELIECIQAFNEKPKKGIASLIDSEFID-SDSHKSIAEILEGTEGRLDKKKLGLYLGTDDDKNNAVLREFISLFDFKG 345 (1024)
T ss_pred chHHHHHHHHHhhhcCcccchhhcccccCC-cccchHHHHHHHhccCcccHHHHHHHhcCCchhHHHHHHHHHHhcCcCC
Confidence 999999999999999999999999999998 468899999987765 599999999999998888999999999999999
Q ss_pred CChHHHHHHHHccccCCCchhHHHHHHHHHHHHHHhhCCCCCCCh-hhHHHHHHHHHHhhhcccChhhhccCCHHHHHHh
Q 000513 632 MNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYEQSSDILSDK-DAALLLSYSLILLNTDQHNAQVKKKMTEEDFIRN 710 (1453)
Q Consensus 632 ~~i~~alR~~l~~frlPgE~q~Idri~e~Fa~~y~~~n~~~~~~~-d~~~~l~~siimLntdlhn~~~k~~mt~~~F~~n 710 (1453)
++||+|||.||.+||||||+|+||||||+||.+||+|||..+.++ |+||+||||+||||||+|||++|.|||++||++|
T Consensus 346 ~~i~eALR~lL~sfrLPgEaQqIDRile~FS~~Y~~~Np~~~~~~~D~vyiLafSlimLNTDlHNp~iK~kMT~~df~~N 425 (1024)
T COG5307 346 LDIDEALRKLLQSFRLPGEAQQIDRILEAFSDKYYSDNPKKFSSKPDSVYILAFSLIMLNTDLHNPNIKAKMTFEDFSKN 425 (1024)
T ss_pred CcHHHHHHHHHHheecCchHHHHHHHHHHHHHHHHHhCcccccCccceeehhHHHHHHHhccccChhhhccccHHHHHhh
Confidence 999999999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred hcccCCCCCCCHHHHHHHHHHhhhcccccCCccCCCCCCCChhHHHHHHhhccCCCCceeccccccchHHHHHhchHHHH
Q 000513 711 NRSINGGKDLPREYLAELYHSICENEILMIPEQGAGSPVMTSSRWINVLHKSREATPFIVCDSRALLDHDMFIILSGPTV 790 (1453)
Q Consensus 711 ~~~~~~~~d~~~~~L~~iy~~I~~~~i~~~~e~~~~~~~~~~~~w~~ll~~s~~~~~~~~~~~~~~~~~~mf~~~w~~il 790 (1453)
++|+|+|+|||++||.++|++|+++||+++++++.. .......|-.+-..-....++ ..+.....++.+|+.+|+-+.
T Consensus 426 ~~g~n~g~~~~~~~L~~~Y~~I~~kei~~~e~~~~~-~~~~~~~~~~~~ss~~~~~~~-~rd~~~~~~~~~f~~v~~~~e 503 (1024)
T COG5307 426 LRGENTGRDFPEEFLEEFYDNIKKKEIVLPEEHHSS-ETSPEDNWPSLDSSFTNIAEF-GRDNQRVADATHFDHVGPIFE 503 (1024)
T ss_pred hcccCCccccCHHHHHHHHHHHhhccccchhhcccc-cccccccchhhhhhhhhhhhc-ccccccchhHhhhhhcchHHH
Confidence 999999999999999999999999999999986432 111122332221110011111 112222336789999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHhccCCCcc------------------chhHHH
Q 000513 791 AAMSVIFDQVEREDVLQRCVDGFLAVAKLSTFYHFGDILDDLVVSVCKFTTLLTPL------------------SVEEAV 852 (1453)
Q Consensus 791 aals~~f~~a~D~~i~~~~L~g~~~~a~ia~~~~l~~~~D~~l~~L~k~t~l~~~~------------------~v~~~~ 852 (1453)
++++..|..+.++........++++|..+|+.|.+++++|+++.+++++|++.+.. ++.+.+
T Consensus 504 t~~~~i~~s~s~~~~~s~~~~si~~~~~ia~~f~~n~p~~~~~~~~s~~t~l~~~S~~~~~~~~~~~~d~~~~is~~~~~ 583 (1024)
T COG5307 504 TSLFPILMSASDDLYSSDGVVSISKCTRIAANFDFNDPRDAFLESLSEFTTLINSSVSEGPYLFIPSEDSLLSISVLELA 583 (1024)
T ss_pred HHHHHHHhhhcchhcccccchHhhcccchhhcceecchhHHHHHHhhccCCccccCccccccccCccccccchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999886432 012346
Q ss_pred HhhCCChHHHHHHHHHHHHHhhcCC--cc-cccHHHHHHHHHHHHHcCCCCccccccccCCCCCCCcccccCcCCCCccc
Q 000513 853 LALGDDTKARMALTTLFTIANRYGD--YI-HSGWKNILDCVLSLHKLGLLPARLVSDAADDMEPSSDQEQEKPATSSVST 929 (1453)
Q Consensus 853 v~fG~~~K~~la~~~Lf~ia~~~G~--~L-~~sW~~Il~~i~~L~~~~Llp~~~~~~~~~~~~~~~~~~~~k~~~~sl~~ 929 (1453)
..+|+..++|++.+.++++..+.++ .+ ...|..+-.....++...++-++.- ..++..+
T Consensus 584 ~~i~~~~~~ql~~v~~~~~~~k~~~~~i~~s~~~~~i~~~~~~~~~~~l~~~~~~------------------~~~~~~~ 645 (1024)
T COG5307 584 ARIGRGFEDQLSDVKLFRLRSKSGNKEILSSSLLSNIENKSLKLYLSSLIEDGKH------------------FSPSIVK 645 (1024)
T ss_pred HHhcccchhhcchhHHhHHhhccccccccchhhhhhhhhhHhhhhhhhhcCCCcc------------------ccccccc
Confidence 7789999999999999999998877 34 4899999988888876665544310 0000000
Q ss_pred CCCCCCCCCCCCCccccccccccccCCCCCCCCCCHHHHHHhhhhHhHHHhhchhhhhhccccCCH-HHHHHHHHHHHHH
Q 000513 930 SHVTPVATPRKSSSLIGRFSQLLSFDMEEPRLQPSEEELAAHQRTRDIIQNCHIDSIFSESKFLQA-ESLLDLVKALILA 1008 (1453)
Q Consensus 930 ~~~~~~~~~~~~sgllS~fss~ls~~~~e~~~~pt~eei~~~~~a~~cI~~~~i~~LF~~s~~L~~-esL~~lI~aL~~~ 1008 (1453)
.-...++ +. --++++...+.++. .++..++++++..
T Consensus 646 --------~~~~~~~----------------~~-------------------~~~~i~~~~s~~s~~~~~l~~~k~~~~~ 682 (1024)
T COG5307 646 --------KLGSPEL----------------PK-------------------LNPDISSGKSKLSVWSAVLSVFKAILSS 682 (1024)
T ss_pred --------cccCccc----------------cc-------------------cCcccccccccccccchHHHHHHHHHhc
Confidence 0000000 00 11455555666665 6778888888861
Q ss_pred hhhhccCCCCCCCCCchhhHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHhc--cCCChhHHHHHHHHHHHHHHHhccCc
Q 000513 1009 SGRLRKGSSSGEDEDTGVFCLELLIAITLNNRDRIMLIWHGVYEHIANIVQS--TVMPSMLVEKAVFGLLRICQRLLPYK 1086 (1453)
Q Consensus 1009 s~~~~~~~~s~~~e~~~~F~Le~lv~v~l~N~~Ri~~~W~~v~~hL~~i~~~--~~~~~~l~erAv~~LlrL~~~ll~~~ 1086 (1453)
+.+.. .+|+.++++..|++++... ..+|..+...... +.....+.+.+.....++..++..-.
T Consensus 683 ------------d~~~~--~~q~~v~~s~~n~~~i~~~-~~i~~~~~~~~~~~~~~~~~~l~~s~~~~~~q~s~~f~~ie 747 (1024)
T COG5307 683 ------------DLPSP--PLQKEVDISKKNVDIIKSE-SKISNVLFKNSEGLSPDLNKTLLESALDSKSQLSSRFLEIE 747 (1024)
T ss_pred ------------cCCCC--CcHHhhhHHhhhhhhhhhh-hHHHhhcccchhhccccccccchhcccchhhhhccccCChh
Confidence 11112 6899999999999998763 6666555332211 11112244455555566666655422
Q ss_pred h----hHHHHHHHHHHHHHccCHHHHHHhhhHHHHHHHHHHhccCCCccCCcChHHHHHHHhhhhcCCcchhhHHHHHHH
Q 000513 1087 E----NLTEELLKSLQLILKLDARVADAYCEPITQEVMRLVKANSTHIRSHVGWRTIISLLSITARHPEASEAGFEALAF 1162 (1453)
Q Consensus 1087 e----~l~~~ll~~L~~L~~l~~~v~~~~~~~Il~~L~~Ll~~~~~~L~s~~gW~~If~iL~~~a~~~~~~~~aFe~L~l 1162 (1453)
+ .++..++.+.......+. ..++.+-.+.|...++++....+.+ | +++|.++......+. +...++.+.
T Consensus 748 e~~~~~f~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~s~~~s--~-~~i~~~~~~~~~~~~-~~~~~s~~~- 820 (1024)
T COG5307 748 ELSDFGFQIALLLPFEYSVEVSL--VVAVKELVIGCSDNLLTEAASSIAS--G-KTIFEISAYEDLSST-LRYILSSLS- 820 (1024)
T ss_pred hhcchhHHHHHhccccccccccc--eeeeeeeehhhHHHHHHHHHHhhhc--c-ccceeeeecccccch-hhhHHHHhc-
Confidence 1 346666666554444432 1245666788999999998888887 8 989888776554332 232333222
Q ss_pred HHhhcccCCh-hhHHHHHHHHHHHHhcccchhhhHHHHHHHHHHhHHHHHhhchhhhhhcchhHHhhhhhhhHhhHHHHH
Q 000513 1163 IMSEAAHLLP-SNFILCVDAARQFAESRVGEVDRSVSALELMAGSVVSLVRWSSEAKNAVGEEAAIKLSQDIGEMWLRLV 1241 (1453)
Q Consensus 1163 Ii~d~~~L~~-~n~~~~V~~L~~F~~q~~~~~~~S~~AldlL~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~lW~pLL 1241 (1453)
++..-+.. ++|...+-+-........+ ......+++.++....++..|.--.. ...+.......|.+.+
T Consensus 821 --~~e~v~s~~n~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~wk~~~~-------~~~~~~~~~~~~~~~l 890 (1024)
T COG5307 821 --NDELVLSQENLFIELLSSKNEGKQNDKN-LELRLHSVDYLRFLLPNVENWKNLSS-------VLSANSNFSKDIFSYL 890 (1024)
T ss_pred --chhhhhChhhHHHHHHhhhHHHHHhccc-hhhhhccHHHHHHHhHHHHHHHHHHH-------HHHhhhhhhHHHHHHH
Confidence 21222344 5666555554444443333 24555667776655444443321100 0011112257899999
Q ss_pred HHHHhhhcCC-cHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHhHhhHHHHH
Q 000513 1242 QGLKKVCLDQ-REEVRNHAVLALQRSLAAVDGIRLPNALWFQCFDMVIFTLLDDLL 1296 (1453)
Q Consensus 1242 ~~La~lc~D~-R~EVR~~AiqtLfr~L~~~~g~~l~~~~W~~~f~~VLFPLL~~l~ 1296 (1453)
.++.++.... -.++ |..++ .++..+....|+.++..-++|++.-..
T Consensus 891 ~~~~~i~~~~~~l~~--------f~~~l-~~~d~~~~~~~e~i~~~~~~~~~~~~~ 937 (1024)
T COG5307 891 EKYVKIGSSALDLEN--------FDQLL-SLLDDFMSAFWEKISKKESFYIKSGAS 937 (1024)
T ss_pred HHHHHhchhhhhHHH--------HHHHH-HhhhHHHHHHHHHHhhhhhheeccccc
Confidence 9999887743 3444 67777 678888899999999999999987663
No 5
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.4e-59 Score=576.16 Aligned_cols=1045 Identities=16% Similarity=0.151 Sum_probs=669.8
Q ss_pred cchhHHHHHHHHHHHHHHhcCCCCcccccCCchhhhchHHHHHHHHHHHHhhhcc-cCCCCChhhhhHHHHHHhccCCCC
Q 000513 31 GAFACMINSEIGAVLAVMRRNVRWGVRYMADDEQLEHSLIHSLKELRKQIFLWQN-QWHKVDPAVYLQPFLDVIQSDETG 109 (1453)
Q Consensus 31 ~~~~~~~~~e~~~v~~~mr~~~r~~~~~~~~~~~~~~pl~~~f~~Lr~~l~~~~~-~~~~~d~~~~l~PFl~vi~s~~t~ 109 (1453)
.++..-+.++...+.+.-||.+- ...+.--++++.||+.-+-.++ +.-.-.-.+++.|||++|.++ +
T Consensus 9 ~sl~~aL~adLrsLsseArkKnn----------~VK~aAdkSi~~Lr~isS~s~ds~vlet~~edf~~PfllaC~sr--~ 76 (1610)
T KOG1848|consen 9 MSLVRALLADLRSLSSEARKKNN----------EVKLAADKSIQELRQISSASRDSDVLETPNEDFLVPFLLACISR--N 76 (1610)
T ss_pred HHHHHHHHHHHHHhhHHHHhhch----------HHHHHHHhHHHHHHhhccccccccccccCCcccccceeeecccC--c
Confidence 34555566677777766665211 1123344788889876443311 111111468999999999999 8
Q ss_pred cchHHHHHHHHHHHHhcCCcCCCCcchHHHHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHccccccccChHHHH
Q 000513 110 APITGVALSSVYKILILDVLDLDTVNVGEAMHLIVEAVTSCRFEVTDPASEEVVLMKILQVLLACMKSKAAVKLSNQHVC 189 (1453)
Q Consensus 110 ~~iT~~AL~sl~kfl~~~~i~~~s~~~~~a~~~i~~avt~crfe~td~~sDe~VllkiLq~l~~~~~~~~g~~l~~~~v~ 189 (1453)
.+.+-+||+|+||+..|..++++ +.++-+..=+.|+. ++ |..|||+||+.+.++.+ ++..++++.+.
T Consensus 77 tRl~~ials~iQkL~~~dsleps--~~aeildn~L~a~~--------qa--e~~QLrvLQtiPii~~s-yl~fi~~p~l~ 143 (1610)
T KOG1848|consen 77 TRLFVIALSCIQKLGRHDSLEPS--VTAEILDNNLWAAA--------QA--EWIQLRVLQTIPIIFFS-YLTFITGPPLL 143 (1610)
T ss_pred ccceeeHHHHHHHHhccCCCCCc--ccHHHHHHHHHHHH--------HH--HHHHHhhhccccceeee-ceeeccCcHHH
Confidence 89999999999999999999985 33333333233322 12 66999999999999888 67899999999
Q ss_pred HHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHccCCCCcccccccccCCCCCCCCCcccccccccCCCCCCCCCCC
Q 000513 190 NIVNTCFRVVHQASSKGELLQRIARQTMHELVRCIFSHLPHIDCLEQSSALGSRSDNGNKVGLMEKEITSGSKPLENGNV 269 (1453)
Q Consensus 190 ~~l~~c~~l~~q~~~~se~lr~tAe~tl~~iv~~vF~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (1453)
+.+..||++.+++ + +++-+||.+|++|+|..||+|++. +..... . . -+.+. ++ .+
T Consensus 144 kll~iCfnLl~~k-n--kvV~NaAaAtlrQlV~~vFdrv~i-es~~~d----~-~-----l~sl~----------~~-s~ 198 (1610)
T KOG1848|consen 144 KLLIICFNLLYQK-N--KVVFNAAAATLRQLVLLVFDRVPI-ESDAFD----F-I-----LPSLT----------EA-SG 198 (1610)
T ss_pred HHHHHHHHHHcCC-C--cceechhHHHHHHHHHHHHHhccc-cccccc----c-c-----chhhh----------cc-CC
Confidence 9999999999963 3 399999999999999999999983 221100 0 0 00000 00 00
Q ss_pred ccccCCCCccccCCCCcccccCCCCCCcccccCCCChhHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCchHHHHHHHH
Q 000513 270 SVERDGQSSVEANNGETTVEMGSTENGEKIMMEPFGVPCMVEIFHFLCSLLNAIENMGIGPRGNPIADDEDVPLFALSLI 349 (1453)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pygl~~~~~lf~~L~sL~~~~~~~~~~~~~n~~~~~~~~~~~~L~Li 349 (1453)
..+ ........+|. .+.|.-.|..+|.++....++. -....+.++..|++++
T Consensus 199 t~s---------------------l~aa~~~~~~l-~~dI~~~~~~i~l~~~~~~~~~------L~~Iee~~~s~~~elL 250 (1610)
T KOG1848|consen 199 TSS---------------------LEAALTALDPL-QKDICVGFENIQLMYPAIFDQL------LAFIEESTKSPGLELL 250 (1610)
T ss_pred ccc---------------------hhhcccccchH-HHhHhcchHHHHHhcccccHhH------Hhcchhccccchhhhh
Confidence 000 00000001111 1223445666666665544421 2356688899999999
Q ss_pred HHHHHhCCCCCCCchHHH--HHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccC
Q 000513 350 NSAIELGGSSIGKYPRLL--VLIQDELFRYLMQFGLSMSPLILSTVCSIVLNLYH-HLRVELKAQLEAFFSCVLLRLAQS 426 (1453)
Q Consensus 350 ~~~le~~g~~~~~~p~l~--~li~d~lc~~Ll~~~~s~~~~i~~~slri~~~L~~-~~r~~Lk~qlE~fl~~l~~~l~~~ 426 (1453)
++++-.....+-.|..|. .++++..||++.+++. .+++++..+.. ..-...+.++|++.+.+.+.++-.
T Consensus 251 esilks~~s~~dq~qdf~~a~ll~~~~~Py~~Rl~~--------~sv~~i~~l~~~ea~~~~ev~lnvi~slisn~~ll~ 322 (1610)
T KOG1848|consen 251 ESILKSNASKSDQIQDFAPAELLALNVVPYAERLLL--------RSVDLIQKLACHEAVVNEEVLLNVIKSLISNTNLLF 322 (1610)
T ss_pred hhhhhcchhhhHHHHHhhHHHHHHhhhHHHHHHHHH--------HHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999988888899999 9999999999998763 23333333332 222233444444444333111100
Q ss_pred -------------------------------------------CCCCCHHHHHHHHHHHHHHhcChhHHHHHHHccCCCC
Q 000513 427 -------------------------------------------KHGSSYQQQEVAMEALVDLCRQQSFMSEMYANFDCDI 463 (1453)
Q Consensus 427 -------------------------------------------~~~~~~~~r~l~LE~l~~l~~~p~~~~~lf~NYDCd~ 463 (1453)
....+.|+|.++++++..++.++..+..++.|+||++
T Consensus 323 ~~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~la~~lk~~s~~~~~~p~~l~~~~~~siv~k~dsi~~~trn~dikt 402 (1610)
T KOG1848|consen 323 DPESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFLASLLKFDSMDLELWPRFLDFLFLKSIVPKNDSIQIFTRNFDIKT 402 (1610)
T ss_pred chhhccccccHHHHhHHhHHHheeecccCcchhhhHHHHhhhhhcCcccCccHhHHHhhccCCCCchhhHHHHhhcccCc
Confidence 0013568999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhccCCCCCCchhhhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCCCCCc
Q 000513 464 TCGNLFEDLTNLLSKSAFPVNGPLSAMHVLALDGMISMVQGMAERISNEFPAPEGATVDPEEYNAFWTLKCSDYSDPNNW 543 (1453)
Q Consensus 464 ~~~nlfe~l~~~L~k~~~p~~~~~~~~~~l~L~~l~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (1453)
.+.+++++.+.-++..++ ++|- ..+-++|.+..+....
T Consensus 403 k~thlldk~~~plan~vy-----------~~lv--~ti~nsi~e~l~k~s~----------------------------- 440 (1610)
T KOG1848|consen 403 KVTHLLDKEILPLANFVY-----------KELV--GTISNSIQEMLNKSSI----------------------------- 440 (1610)
T ss_pred chHHHHhhcccccchhHH-----------HHHH--HhhhHHHHHHHHHhHH-----------------------------
Confidence 999999887776665432 2221 1233444433332110
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCChhhhHHHHHhCCCCCCCCChHHHHHHhhhcCCCCHHHHHhhhcCCChhhHHHHHHH
Q 000513 544 IPFVRKMKYIKRKLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGDFLGNHDEFCVQVLHEF 623 (1453)
Q Consensus 544 ~~~l~~~k~~K~~~~~~~~~Fn~~pk~gi~~l~~~~~~~~~~~~~~ia~fl~~~~~l~k~~ige~l~~~~~~~~~vl~~f 623 (1453)
.-|-..|-.+ .+||++-. +.|.... +++..+
T Consensus 441 --------------esg~~eFt~k-~k~Ie~~~-------dnds~st---------------------------avl~~l 471 (1610)
T KOG1848|consen 441 --------------ESGGSEFTSK-EKGIELRE-------DNDSMST---------------------------AVLLQL 471 (1610)
T ss_pred --------------hhcCccchhh-hcCceeec-------cCchHHH---------------------------HHHHHH
Confidence 0000001111 23443321 1122222 222211
Q ss_pred HhcCCCCCCChHHHHHHHHccccCCCchhHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHhhhcccChhhhccCC
Q 000513 624 AGTFNFRGMNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYEQSSDILSDKDAALLLSYSLILLNTDQHNAQVKKKMT 703 (1453)
Q Consensus 624 ~~~fdf~~~~i~~alR~~l~~frlPgE~q~Idri~e~Fa~~y~~~n~~~~~~~d~~~~l~~siimLntdlhn~~~k~~mt 703 (1453)
.. .-+.-+|. .-..+.++||+... +
T Consensus 472 ~~--------------------------------------~~~~li~e----~~~ss~~avSt~~~-------------~ 496 (1610)
T KOG1848|consen 472 SF--------------------------------------SNKVLIPE----GLYSSRMAVSTLLK-------------R 496 (1610)
T ss_pred Hh--------------------------------------hhhhhccc----cchhhhHHHHHHHH-------------H
Confidence 00 00000111 11223455555431 1
Q ss_pred HHHHHHhhcccCCCCCCCHHHHHHHHHHhhhcccccCCccCCCCCCCChhHHHHHHhhccCCCCceeccccccchHHHHH
Q 000513 704 EEDFIRNNRSINGGKDLPREYLAELYHSICENEILMIPEQGAGSPVMTSSRWINVLHKSREATPFIVCDSRALLDHDMFI 783 (1453)
Q Consensus 704 ~~~F~~n~~~~~~~~d~~~~~L~~iy~~I~~~~i~~~~e~~~~~~~~~~~~w~~ll~~s~~~~~~~~~~~~~~~~~~mf~ 783 (1453)
-.+|-.. |. +.+...+. .++-.+ .....-+++..
T Consensus 497 a~~v~~l------------------~~---------~~~~~s~k------------------~~l~~~-~kLe~i~~a~~ 530 (1610)
T KOG1848|consen 497 AQDVLHL------------------YI---------EDEVLSNK------------------CPLPRQ-TKLEIIFDAVL 530 (1610)
T ss_pred HHHHHHH------------------hh---------hhhhhccC------------------Cccccc-eeehhHHHHHh
Confidence 1122111 00 00000000 000000 01112245678
Q ss_pred hchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHhccCCCcc----------c------
Q 000513 784 ILSGPTVAAMSVIFDQVEREDVLQRCVDGFLAVAKLSTFYHFGDILDDLVVSVCKFTTLLTPL----------S------ 847 (1453)
Q Consensus 784 ~~w~~ilaals~~f~~a~D~~i~~~~L~g~~~~a~ia~~~~l~~~~D~~l~~L~k~t~l~~~~----------~------ 847 (1453)
..|..++++++.....+.|+.+...++.++...++.||+.+-.++.++++..+|+|+.+..+. +
T Consensus 531 snq~tildalks~l~~st~e~is~qvl~s~stltsa~~~~~Ade~lna~~~~l~~~~~~s~r~vs~lr~l~s~Spv~gr~ 610 (1610)
T KOG1848|consen 531 SNQSTILDALKSTLPESTDEIISAQVLASYSTLTSACGRCSADEVLNALKEALVPFKDFSPRPVSRLRCLNSESPVVGRK 610 (1610)
T ss_pred hccccHHHHhhhhccccccchhhHHHHhchHHHHhccccccchhHHHHHHHhhCCcccCCccHHHHHhhccccCcccccc
Confidence 889999999999999999999999999999999999999999999999999999999763211 0
Q ss_pred h-hHH-----------------------H----HhhCCChHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHcCCC
Q 000513 848 V-EEA-----------------------V----LALGDDTKARMALTTLFTIANRYGDYIHSGWKNILDCVLSLHKLGLL 899 (1453)
Q Consensus 848 v-~~~-----------------------~----v~fG~~~K~~la~~~Lf~ia~~~G~~L~~sW~~Il~~i~~L~~~~Ll 899 (1453)
+ ++. + -..-.+.||..|+|++++++..+-..++.+|..++.+...|.+.--.
T Consensus 611 ~~sew~~dfetw~~~t~~~~~~p~~~~~s~ss~~~v~lT~snvqa~rsf~t~~~~~~~sy~~sw~llm~t~~~ls~~~~m 690 (1610)
T KOG1848|consen 611 MGSEWKIDFETWDKATIILNRSPTSKHLSTSSLNRVNLTNSNVQASRSFSTLMDYELVSYKNSWSLLMYTTSSLSQPAYM 690 (1610)
T ss_pred CCcceEEEEeeccceeeEecCCCCCccccccCCCccccccchHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcchhhc
Confidence 0 000 0 00124679999999999999999999999999999999888753211
Q ss_pred -CccccccccCCCCCCCcccccCcCCCCcccCCCCCCCCCCCCCccccccccccccCCCCCCCCCCHHHHHHhhhhHhHH
Q 000513 900 -PARLVSDAADDMEPSSDQEQEKPATSSVSTSHVTPVATPRKSSSLIGRFSQLLSFDMEEPRLQPSEEELAAHQRTRDII 978 (1453)
Q Consensus 900 -p~~~~~~~~~~~~~~~~~~~~k~~~~sl~~~~~~~~~~~~~~sgllS~fss~ls~~~~e~~~~pt~eei~~~~~a~~cI 978 (1453)
|....... +.+. +..+.+|+.+-+ ...+.+.+
T Consensus 691 ~p~qt~l~v-------------------------------~t~~--------------~~hp~~p~~~~~--~~ynd~~~ 723 (1610)
T KOG1848|consen 691 EPLQTLLAV-------------------------------ITSS--------------SVHPIQPLTAPR--QSYNDDLL 723 (1610)
T ss_pred CHHHhhHHH-------------------------------HhcC--------------CCCCCCcchhhH--HHHHHHHH
Confidence 21100000 0000 111234433322 11223334
Q ss_pred HhhchhhhhhccccCCHHHHHHHHHHHHHHhhhhccCCCCCCCCCch--hhHHHHHHHHHhhcchhhhhhHHHHHHHHHH
Q 000513 979 QNCHIDSIFSESKFLQAESLLDLVKALILASGRLRKGSSSGEDEDTG--VFCLELLIAITLNNRDRIMLIWHGVYEHIAN 1056 (1453)
Q Consensus 979 ~~~~i~~LF~~s~~L~~esL~~lI~aL~~~s~~~~~~~~s~~~e~~~--~F~Le~lv~v~l~N~~Ri~~~W~~v~~hL~~ 1056 (1453)
.+.--+++|.+++.++..+...+++||++++......+.......-+ .|.+...+-....|-.|-...|....+||..
T Consensus 724 lssl~~~v~~~~a~~~~ss~~slL~ali~ls~~sli~~~~~~~sslr~~~~~l~v~~~~~~l~e~snq~~~~naa~~l~t 803 (1610)
T KOG1848|consen 724 LSSLKNSVYKTSANRSISSGISLLRALIELSYSSLILETVCSCSSLRFLDSKLDVSGWSLILKELSNQFKIINAAPELRT 803 (1610)
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhhccccccccccchhhhhHHHHHHHHhhhHHHHHHhHHHHHH
Confidence 44444899999999999999999999999986533211100000000 1455555666666666666788888888876
Q ss_pred HHhccCCChhHHHHHHHHHHHHHHHhccCch----hHHHHHHHHHHHHHccCHHHHHHhhhHHHHHHHHHHhccCCCccC
Q 000513 1057 IVQSTVMPSMLVEKAVFGLLRICQRLLPYKE----NLTEELLKSLQLILKLDARVADAYCEPITQEVMRLVKANSTHIRS 1132 (1453)
Q Consensus 1057 i~~~~~~~~~l~erAv~~LlrL~~~ll~~~e----~l~~~ll~~L~~L~~l~~~v~~~~~~~Il~~L~~Ll~~~~~~L~s 1132 (1453)
.+++.-. .+.-.+...+-+.+..-..++. +-+..++-+++...-..+-+ +++..-++++.+++++.|+++-+
T Consensus 804 ~~n~vl~--s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~s~~~~--evr~~sl~~l~silet~ge~ll~ 879 (1610)
T KOG1848|consen 804 RANNVLA--SILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDNSSRGV--EVRISSLEALVSILETVGEHLLH 879 (1610)
T ss_pred HHHHHHH--HHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHhcCccc--eeeHHHHHHHHHHHhccchhhcc
Confidence 6553210 1111111111111110000111 11122222222221111111 34555679999999999999988
Q ss_pred CcChHHHHHHHhhhh-----cCCcchhhHHHHHHHHHhhc-ccCChhhHHHHHHHHHHHHhcccchhhhHHHHHHHHHHh
Q 000513 1133 HVGWRTIISLLSITA-----RHPEASEAGFEALAFIMSEA-AHLLPSNFILCVDAARQFAESRVGEVDRSVSALELMAGS 1206 (1453)
Q Consensus 1133 ~~gW~~If~iL~~~a-----~~~~~~~~aFe~L~lIi~d~-~~L~~~n~~~~V~~L~~F~~q~~~~~~~S~~AldlL~~~ 1206 (1453)
||..||++|+.+. ++.+.++.||++|++|++|+ +.||.+|+..|||++..|++|.+|. |+|++||+++|+.
T Consensus 880 --~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~fs~Qktdl-NISltAi~lfWtv 956 (1610)
T KOG1848|consen 880 --GWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVFSRQKTDL-NISLTAIGLFWTV 956 (1610)
T ss_pred --ccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHHHhhhccc-cccHHHHHHHHHH
Confidence 8999999999764 36778999999999999997 9999999999999999999999995 9999999999999
Q ss_pred HHHHHhhc--hhhh--hhcchhHHh-hh---hhhhHhhHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhhhcCCCCChH
Q 000513 1207 VVSLVRWS--SEAK--NAVGEEAAI-KL---SQDIGEMWLRLVQGLKKVCLDQREEVRNHAVLALQRSLAAVDGIRLPNA 1278 (1453)
Q Consensus 1207 ~~~l~~~~--~~~~--~~~~~~~l~-~~---~~~~~~lW~pLL~~La~lc~D~R~EVR~~AiqtLfr~L~~~~g~~l~~~ 1278 (1453)
.+++.+-. .... .....+++. .+ ...++.+|+.||..|+++|.|.|+||||+|+||||||+. +||..|++.
T Consensus 957 sDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~-Shg~~l~~~ 1035 (1610)
T KOG1848|consen 957 SDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFN-SHGSKLGTN 1035 (1610)
T ss_pred HHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHh-hhcccCChh
Confidence 99887511 1100 011111111 11 223578999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHhHhhHHHHHHHhhh-C-CCccccchhHHHHHHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHHhh
Q 000513 1279 LWFQCFDMVIFTLLDDLLEIAQA-S-SPKDYRNIDGTLVLAMKLMSKAFLQQLQDLSQQPSFCKLWLGVLDHMDKYMKLK 1356 (1453)
Q Consensus 1279 ~W~~~f~~VLFPLL~~l~~~~~~-~-s~~d~~~~~ET~~lal~lLskvFl~~l~~L~~~~~F~~lW~~iLd~l~~~~~~~ 1356 (1453)
.|+.|||+|++|||+......+. . .....++|+||.+++++|++|+|..|+..|..+++|.+.|..+|+|++|...
T Consensus 1036 aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s-- 1113 (1610)
T KOG1848|consen 1036 AWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHS-- 1113 (1610)
T ss_pred HHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh--
Confidence 99999999999999976432221 1 1244689999999999999999999999999999999999999999999987
Q ss_pred hcCCCchhHhhHHHHHHHHHHHhhhhcCCcCCCC---------------CCCccchHHHHHHHHHHhchhhc
Q 000513 1357 LRGKRSDKIHELIPELLKNNLLVMKTTGILLPTD---------------DIGGDSFWQLTWLHVKKISPSMQ 1413 (1453)
Q Consensus 1357 ~~~~~s~~l~Eav~esLKN~Llvm~~~g~l~~~~---------------~~~~~~lW~~Tw~~i~~~~P~L~ 1413 (1453)
+.+.++.-++..+++.++.-....|.+.-.. +.....-|...|+-|.+++-||-
T Consensus 1114 ---~~s~e~slsai~~~qell~sii~~~~ln~~~~~k~n~vf~~y~~~~~~~ssas~~t~~kv~~eiltgl~ 1182 (1610)
T KOG1848|consen 1114 ---DISPEISLSAIKALQELLFSIIEFGKLNATFTLKINLVFINYGRFCEVSSSASERTLAKVSQEILTGLI 1182 (1610)
T ss_pred ---cCChHhHHHHHHHHHHHHHHHhhhccccchHHHHhhhhhhhHhhhcccccccchhHHHHHHHHHHhhhH
Confidence 3477888899999999988766555442220 01123568999999999988886
No 6
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=100.00 E-value=1.2e-49 Score=431.68 Aligned_cols=187 Identities=51% Similarity=0.869 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHhhhcCChhhhHHHHHhCCCCCCCCChHHHHHHhhhcCCCCHHHHHhhhcCCChhhHHHHHHHHhcCCCC
Q 000513 551 KYIKRKLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGDFLGNHDEFCVQVLHEFAGTFNFR 630 (1453)
Q Consensus 551 k~~K~~~~~~~~~Fn~~pk~gi~~l~~~~~~~~~~~~~~ia~fl~~~~~l~k~~ige~l~~~~~~~~~vl~~f~~~fdf~ 630 (1453)
|++|+.+.+|+.+||.+|++||+||+++|+++.+.+|.+||+||+.+++|||++||+|||+++++|.+||++|++.|||+
T Consensus 2 k~~k~~l~~~~~~FN~~p~~gi~~l~~~~~~~~~~~~~~iA~fL~~~~~l~k~~ige~Lg~~~~~n~~vL~~y~~~fdf~ 81 (190)
T PF01369_consen 2 KKRKRQLEEGVELFNKNPKKGIEYLIQNGFLENEDDPKSIAKFLFQTPGLDKKKIGEYLGKDNPFNRDVLKEYISLFDFS 81 (190)
T ss_dssp GHHHHHHHHHHHHHHHSHHHHHHHHHHTTSSTS-SSHHHHHHHHHHTTTS-HHHHHHHHTSSSHHHHHHHHHHHHTSS-T
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHhccchHHHHHHHHHHHHcCCc
Confidence 67899999999999999999999999999996667999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHccccCCCchhHHHHHHHHHHHHHHhhCCC--CCCChhhHHHHHHHHHHhhhcccChhhhccCCHHHHH
Q 000513 631 GMNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYEQSSD--ILSDKDAALLLSYSLILLNTDQHNAQVKKKMTEEDFI 708 (1453)
Q Consensus 631 ~~~i~~alR~~l~~frlPgE~q~Idri~e~Fa~~y~~~n~~--~~~~~d~~~~l~~siimLntdlhn~~~k~~mt~~~F~ 708 (1453)
|++||+|||.||.+|+||||+|+|||||++||++||+|||+ .|.|+|+||+|+||+||||||+|||++++|||+++|+
T Consensus 82 ~~~i~~ALR~~l~~f~LpgE~q~idril~~Fs~~y~~~Np~~~~~~~~d~v~~l~~slimLnTdlHn~~~~~kmt~~~Fi 161 (190)
T PF01369_consen 82 GMSIDEALRKFLSSFRLPGESQQIDRILEAFSERYYECNPNSTPFKSPDTVYILAYSLIMLNTDLHNPNIKKKMTKEDFI 161 (190)
T ss_dssp TS-HHHHHHHHCTSS-BTSSHHHHHHHHHHHHHHHHHHTTTGCSSSSHHHHHHHHHHHHHHHHHHH-TTSSSS--HHHHH
T ss_pred CccHHHHHHHhcceeeeccchHHHHHHHHHHHHHHHHhCCcccccccHhHHHHHHHHHHHHhHHHHhhccccCCcHHHHH
Confidence 99999999999999999999999999999999999999996 8999999999999999999999999999999999999
Q ss_pred HhhcccCCCCCCCHHHHHHHHHHhhhccc
Q 000513 709 RNNRSINGGKDLPREYLAELYHSICENEI 737 (1453)
Q Consensus 709 ~n~~~~~~~~d~~~~~L~~iy~~I~~~~i 737 (1453)
+|++|+++|+++|+++|.+||++|+++||
T Consensus 162 ~~~~~~~~~~~~~~~~L~~iY~~I~~~~~ 190 (190)
T PF01369_consen 162 KNTRGIDDGKDIPEEFLESIYDSIKANPF 190 (190)
T ss_dssp HHTTTTBTTBS--HHHHHHHHHHHHHS--
T ss_pred HHhhcccCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999986
No 7
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-50 Score=425.40 Aligned_cols=204 Identities=44% Similarity=0.717 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHhhhcCChhhhHHHHHhCCCCCCCCChHHHHHHhhhcCCCCHHHHHhhhcCCChhhHHHHHHHHhcCCCC
Q 000513 551 KYIKRKLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGDFLGNHDEFCVQVLHEFAGTFNFR 630 (1453)
Q Consensus 551 k~~K~~~~~~~~~Fn~~pk~gi~~l~~~~~~~~~~~~~~ia~fl~~~~~l~k~~ige~l~~~~~~~~~vl~~f~~~fdf~ 630 (1453)
+++-+.+..|-.+||.+|+|||+||+++.++.. ||++||+||+.-.||+|.+||+|||.+++||.+||++|++...|.
T Consensus 59 ~q~~k~~~~GRKKFNmDP~Kgiq~l~e~~ll~~--dpq~iA~flykGEGLnKtaIG~yLGer~~~nl~vL~aFv~~Hef~ 136 (395)
T KOG0930|consen 59 KQRNKQVAMGRKKFNMDPKKGIQFLIENDLLQN--DPEDIARFLYKGEGLNKTAIGDYLGERDEFNLQVLHAFVDLHEFT 136 (395)
T ss_pred HHHhHHHhhchhhcCCChHHHhHHHHHcccccC--CHHHHHHHHHhcCCcchhhHhhhhccCchhHHHHHHHHHHHHHhc
Confidence 555667888999999999999999999999986 899999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHccccCCCchhHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHhhhcccChhhhccCCHHHHHHh
Q 000513 631 GMNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYEQSSDILSDKDAALLLSYSLILLNTDQHNAQVKKKMTEEDFIRN 710 (1453)
Q Consensus 631 ~~~i~~alR~~l~~frlPgE~q~Idri~e~Fa~~y~~~n~~~~~~~d~~~~l~~siimLntdlhn~~~k~~mt~~~F~~n 710 (1453)
++++.+|||.||-+||||||||+|||+||+||++||.|||++|.|+|++|+|+||||||||.|||||||.|-++|.|+.|
T Consensus 137 dlnlVqALRQfLwSFRLPGEaQKIdRmmEaFA~rYclcNPgvfqstDtcyvlsfs~IMlNTsLHNpNVrDkP~lErfi~M 216 (395)
T KOG0930|consen 137 DLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNPNVKDKPTLERFIAM 216 (395)
T ss_pred cchHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCcccccCceeeeeeehhhhhcccccCCCCCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCHHHHHHHHHHhhhcccccCCccCCCC----CCCChhHHH
Q 000513 711 NRSINGGKDLPREYLAELYHSICENEILMIPEQGAGS----PVMTSSRWI 756 (1453)
Q Consensus 711 ~~~~~~~~d~~~~~L~~iy~~I~~~~i~~~~e~~~~~----~~~~~~~w~ 756 (1453)
+||+|.|.|+|++.|.++|++|+++++++|++.+... .+...+.|.
T Consensus 217 Nrgineggdlpee~LrnlyeSi~~epFkIPeddgndlthtffnpdREGWL 266 (395)
T KOG0930|consen 217 NRGINEGGDLPEELLRNLYESIKNEPFKIPEDDGNDLTHTFFNPDREGWL 266 (395)
T ss_pred hhccccCCCCcHHHHHHHHHHhcCCCCCCCcccCCcchhhccCcccccee
Confidence 9999999999999999999999999999999875443 233445563
No 8
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=100.00 E-value=2.3e-49 Score=426.09 Aligned_cols=183 Identities=55% Similarity=0.872 Sum_probs=178.5
Q ss_pred HHHHHHHHhhhcCChhhhHHHHHhCCCCCCCCChHHHHHHhhhcCCCCHHHHHhhhcCCChhhHHHHHHHHhcCCCCCCC
Q 000513 554 KRKLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGDFLGNHDEFCVQVLHEFAGTFNFRGMN 633 (1453)
Q Consensus 554 K~~~~~~~~~Fn~~pk~gi~~l~~~~~~~~~~~~~~ia~fl~~~~~l~k~~ige~l~~~~~~~~~vl~~f~~~fdf~~~~ 633 (1453)
|+.+.+|+.+||.+|++||+||++.++++ +.+|++||+||+++++|||++||+|||++++++.+||++|+++|||+|++
T Consensus 2 k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~-~~~~~~iA~fl~~~~~l~k~~ig~~L~~~~~~~~~vL~~y~~~f~f~~~~ 80 (185)
T cd00171 2 KTLLSEGRQLFNRKPKKGISFLIEKGFLE-DDSPKEIAKFLYETEGLNKKAIGEYLGENNEFNSLVLHEFVDLFDFSGLR 80 (185)
T ss_pred cHHHHHHHHHHccCHHHHHHHHHHCCCCC-CCCHHHHHHHHHhCCCCCHHHHHHHHcCCchHHHHHHHHHHHhcCCCCCC
Confidence 77889999999999999999999999995 24899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHccccCCCchhHHHHHHHHHHHHHHhhCCCCCC-ChhhHHHHHHHHHHhhhcccChhhhccCCHHHHHHhhc
Q 000513 634 LDTALRLFLGTFRLPGESQKIQRVLEAFAERYYEQSSDILS-DKDAALLLSYSLILLNTDQHNAQVKKKMTEEDFIRNNR 712 (1453)
Q Consensus 634 i~~alR~~l~~frlPgE~q~Idri~e~Fa~~y~~~n~~~~~-~~d~~~~l~~siimLntdlhn~~~k~~mt~~~F~~n~~ 712 (1453)
||+|||.||.+|+||||+|+||||||+||++||+|||+.+. |+|++|+|+||+||||||+|||++++|||+++|++|++
T Consensus 81 i~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~~~d~v~~l~~sllmLnTdlHn~~~~~kmt~~~Fi~~~~ 160 (185)
T cd00171 81 LDEALRKFLQSFRLPGEAQKIDRLLEKFSERYCECNPGIFSSSADAAYTLAYSIIMLNTDLHNPNVKKKMTLEDFIKNLR 160 (185)
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHCCCCCCCChhHHHHHHHHHHHHhHHhcCcccCCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHhhhccc
Q 000513 713 SINGGKDLPREYLAELYHSICENEI 737 (1453)
Q Consensus 713 ~~~~~~d~~~~~L~~iy~~I~~~~i 737 (1453)
|+++|++||+++|++||++|+.+||
T Consensus 161 ~~~~~~~~~~~~L~~iY~~I~~~~~ 185 (185)
T cd00171 161 GINDGEDFPREFLKELYDSIKNNEI 185 (185)
T ss_pred cccCCCCCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999986
No 9
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=100.00 E-value=1.4e-48 Score=421.61 Aligned_cols=184 Identities=56% Similarity=0.855 Sum_probs=179.4
Q ss_pred HHHHHHHHHhhhcCChhhhHHHHHhCCCCCCCCChHHHHHHhhhcCCCCHHHHHhhhcCCChhhHHHHHHHHhcCCCCCC
Q 000513 553 IKRKLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGDFLGNHDEFCVQVLHEFAGTFNFRGM 632 (1453)
Q Consensus 553 ~K~~~~~~~~~Fn~~pk~gi~~l~~~~~~~~~~~~~~ia~fl~~~~~l~k~~ige~l~~~~~~~~~vl~~f~~~fdf~~~ 632 (1453)
+|+.+.+|+.+||.+|++||+||++.|++.+ .+|++||+||++++++||++||+|||++++++.+||++|++.|||+|+
T Consensus 2 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~-~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vL~~y~~~f~f~~~ 80 (187)
T smart00222 2 RKKLLSEGSVKFNDKPKKGIDSLQEKGFLAK-DDPQDVADFLSKNEGLNKKAIGDYLGEHDEFNRLVLHAFVDLFDFSAK 80 (187)
T ss_pred chHHHHHHHHHHccCHHHHHHHHHHcCCCCC-CCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhcCcCCC
Confidence 4778999999999999999999999999984 489999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHccccCCCchhHHHHHHHHHHHHHHhhCCCCCC--ChhhHHHHHHHHHHhhhcccChhhhccCCHHHHHHh
Q 000513 633 NLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYEQSSDILS--DKDAALLLSYSLILLNTDQHNAQVKKKMTEEDFIRN 710 (1453)
Q Consensus 633 ~i~~alR~~l~~frlPgE~q~Idri~e~Fa~~y~~~n~~~~~--~~d~~~~l~~siimLntdlhn~~~k~~mt~~~F~~n 710 (1453)
+||+|||.||..|+||||+|+||||||+||++||+|||+.+. |+|++|+|+||+||||||+|||++|+|||+++|++|
T Consensus 81 ~i~~ALR~~l~~f~lpgE~q~Idrile~Fs~~y~~~N~~~~~~~~~d~~y~l~~s~lmLnTdlhn~~~k~kmt~~~Fi~~ 160 (187)
T smart00222 81 DLDQALREFLESFRLPGEAQKIDRLLEAFSSRYCECNPSVFSKLNADAAYTLAYSLIMLNTDLHNPNVKKKMTLEDFIKN 160 (187)
T ss_pred cHHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHCCCccCCCChhHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCHHHHHHHHHHhhhccc
Q 000513 711 NRSINGGKDLPREYLAELYHSICENEI 737 (1453)
Q Consensus 711 ~~~~~~~~d~~~~~L~~iy~~I~~~~i 737 (1453)
++|+++|.++|+++|++||++|+.+||
T Consensus 161 ~~~~~~~~~~~~~~L~~iY~~I~~~~i 187 (187)
T smart00222 161 VRGSNDGEDLPREFLEELYDSIKNNEI 187 (187)
T ss_pred HhccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999986
No 10
>KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-47 Score=425.08 Aligned_cols=189 Identities=38% Similarity=0.713 Sum_probs=182.9
Q ss_pred HHHHHHHHHhhhcCChhhhHHHHHhCCCCCCCCChHHHHHHhhhcCCCCHHHHHhhhcCC-ChhhHHHHHHHHhcCCCCC
Q 000513 553 IKRKLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGDFLGNH-DEFCVQVLHEFAGTFNFRG 631 (1453)
Q Consensus 553 ~K~~~~~~~~~Fn~~pk~gi~~l~~~~~~~~~~~~~~ia~fl~~~~~l~k~~ige~l~~~-~~~~~~vl~~f~~~fdf~~ 631 (1453)
+|+.+..|..+||.||.|||+||++.||+++ +|..||+||....||+|+|||||||+. ++||..||+++++.+||++
T Consensus 197 ~kr~YriGlnlfn~kPekGvQ~Li~rGFv~d--tPvgvAhfllqRkGLSrqMIGEflGn~~kqfnrdVLdcvvdemDfss 274 (627)
T KOG0931|consen 197 RKRHYRIGLNLFNKKPEKGVQYLIERGFVPD--TPVGVAHFLLQRKGLSRQMIGEFLGNRQKQFNRDVLDCVVDEMDFSS 274 (627)
T ss_pred HHHHhhhccchhcCCcchhhhhhhhhcccCC--CchHHHHHHHhhccchHHHHHHHhccccchhhhHHHHHHHhhhcccc
Confidence 5777889999999999999999999999997 899999999999999999999999986 6899999999999999999
Q ss_pred CChHHHHHHHHccccCCCchhHHHHHHHHHHHHHHhhCCCC---CCChhhHHHHHHHHHHhhhcccChhhh--ccCCHHH
Q 000513 632 MNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYEQSSDI---LSDKDAALLLSYSLILLNTDQHNAQVK--KKMTEED 706 (1453)
Q Consensus 632 ~~i~~alR~~l~~frlPgE~q~Idri~e~Fa~~y~~~n~~~---~~~~d~~~~l~~siimLntdlhn~~~k--~~mt~~~ 706 (1453)
|.+|+|||+|...||+|||||+|||+||+||++||.|||.+ |.+.|++|+|||||||||||+|+|||| +||+++|
T Consensus 275 melDeALRKfqahirvqgEAqKveRlIeAFsqrYc~cNP~~v~qfrnpDTIfiLaFAIIlLNTDmySPnVKperkM~leD 354 (627)
T KOG0931|consen 275 MELDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCKCNPKVVRQFRNPDTIFILAFAIILLNTDMYSPNVKPERKMKLED 354 (627)
T ss_pred chHHHHHHHHHHHeecccHHHHHHHHHHHHHHHHhccCHHHHhhccCCCeehHHHHHHHHhcccccCCCCCHHHhhhHHH
Confidence 99999999999999999999999999999999999999985 889999999999999999999999999 8999999
Q ss_pred HHHhhcccCCCCCCCHHHHHHHHHHhhhcccccCCcc
Q 000513 707 FIRNNRSINGGKDLPREYLAELYHSICENEILMIPEQ 743 (1453)
Q Consensus 707 F~~n~~~~~~~~d~~~~~L~~iy~~I~~~~i~~~~e~ 743 (1453)
||+|+||+++|.|+|+++|..||++|+++|++..++|
T Consensus 355 FikNLRGvDnGeDIpRell~GIYeRIqk~ELktndDH 391 (627)
T KOG0931|consen 355 FIKNLRGVDNGEDIPRELLVGIYERIQKRELKTNDDH 391 (627)
T ss_pred HHHhccCCCCcccCcHHHHHHHHHHHHHhhcccCcch
Confidence 9999999999999999999999999999999998875
No 11
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=99.96 E-value=5.1e-29 Score=266.58 Aligned_cols=164 Identities=34% Similarity=0.553 Sum_probs=146.0
Q ss_pred CCChhHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCchHHHHHHHHHHHHHhCCCCCC---CchHHHHHHHHHHHHHHH
Q 000513 303 PFGVPCMVEIFHFLCSLLNAIENMGIGPRGNPIADDEDVPLFALSLINSAIELGGSSIG---KYPRLLVLIQDELFRYLM 379 (1453)
Q Consensus 303 pygl~~~~~lf~~L~sL~~~~~~~~~~~~~n~~~~~~~~~~~~L~Li~~~le~~g~~~~---~~p~l~~li~d~lc~~Ll 379 (1453)
.|+.+++.++||+||+|+....+.+..| ...+++..+|++||+||+++|+++|+.|. +||.++.++|+++|++|+
T Consensus 2 ~~~~~Da~~vf~~Lc~L~~~~~~~~~~~--~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll 79 (168)
T PF12783_consen 2 NYYVKDAFLVFRDLCSLSSKPSDPGNSP--DFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALL 79 (168)
T ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCc--chhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHH
Confidence 3678889999999999984222111111 12246789999999999999999999999 666999999999999999
Q ss_pred HhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcChhHHHHHHHcc
Q 000513 380 QFGLSMSPLILSTVCSIVLNLYHHLRVELKAQLEAFFSCVLLRLAQSKHGSSYQQQEVAMEALVDLCRQQSFMSEMYANF 459 (1453)
Q Consensus 380 ~~~~s~~~~i~~~slri~~~L~~~~r~~Lk~qlE~fl~~l~~~l~~~~~~~~~~~r~l~LE~l~~l~~~p~~~~~lf~NY 459 (1453)
+++.++.++++.+++|++.+|+.+||.+||.|+|+|++.++.+++++++ +++|||+++||++.++|++|++++|+|+||
T Consensus 80 ~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~-~~~~~k~~~Le~l~~l~~~p~~l~~lf~NY 158 (168)
T PF12783_consen 80 KNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDN-SSLWQKELALEILRELCKDPQFLVDLFVNY 158 (168)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHHHHhChhHHHHHHHHc
Confidence 9998888999999999999999999999999999999999999998886 488999999999999999999999999999
Q ss_pred CCCCCCCchH
Q 000513 460 DCDITCGNLF 469 (1453)
Q Consensus 460 DCd~~~~nlf 469 (1453)
|||.+++|||
T Consensus 159 DCd~~~~nif 168 (168)
T PF12783_consen 159 DCDLNSKNIF 168 (168)
T ss_pred CCCCCCCCCC
Confidence 9999999996
No 12
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.6e-29 Score=285.68 Aligned_cols=152 Identities=39% Similarity=0.622 Sum_probs=147.3
Q ss_pred hHHHHHHhhhcCCCCHHHHHhhhcCCChhhHHHHHHHHhcCCCCCCChHHHHHHHHccccCCCchhHHHHHHHHHHHHHH
Q 000513 587 PQSVALFFRYTVGLDKNLIGDFLGNHDEFCVQVLHEFAGTFNFRGMNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYY 666 (1453)
Q Consensus 587 ~~~ia~fl~~~~~l~k~~ige~l~~~~~~~~~vl~~f~~~fdf~~~~i~~alR~~l~~frlPgE~q~Idri~e~Fa~~y~ 666 (1453)
+..+|+=|+.-.+.-|..++.+|||.++|..-|..+|++.|+|.|++||.|||.||..|-|-||.|.-+||+-+||.|||
T Consensus 307 A~rlArrLY~L~gf~~sdVA~~LgknNeFS~lVa~eYL~fF~Fsg~tlD~ALR~Flka~~L~GETqeRERvL~hFS~Ry~ 386 (774)
T KOG0932|consen 307 AARLARRLYRLEGFRKSDVARHLGKNNEFSRLVAEEYLSFFQFSGMTLDQALREFLKALELMGETQERERVLRHFSRRYF 386 (774)
T ss_pred HHHHHHHHHHhhCccHHHHHHHhcccchHHHHHHHHHHHHhhccCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhh
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCChhhHHHHHHHHHHhhhcccChhhhccCCHHHHHHhhcccCCCCCCCHHHHHHHHHHhhhcccc
Q 000513 667 EQSSDILSDKDAALLLSYSLILLNTDQHNAQVKKKMTEEDFIRNNRSINGGKDLPREYLAELYHSICENEIL 738 (1453)
Q Consensus 667 ~~n~~~~~~~d~~~~l~~siimLntdlhn~~~k~~mt~~~F~~n~~~~~~~~d~~~~~L~~iy~~I~~~~i~ 738 (1453)
+|||+.|.+.|.|++|.++||+||||||.+||-||||..|||-|+.|.|+|.|||.|+|..+|++||++.+.
T Consensus 387 ~CNP~~~~S~DgvHtLTCAlmLLNTDLHGhniGKkMtcqdFI~Nl~glndG~dF~kelLKaLy~SIKnekle 458 (774)
T KOG0932|consen 387 QCNPDIFDSEDGVHTLTCALMLLNTDLHGHNIGKKMTCQDFITNLAGLNDGGDFPKELLKALYNSIKNEKLE 458 (774)
T ss_pred ccCccccccccchhHHHHHHHHHccccccccccccccHHHHHHHHhcccccCccHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998543
No 13
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=98.79 E-value=5.8e-09 Score=98.59 Aligned_cols=72 Identities=22% Similarity=0.487 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHhhhHHHHHHHHHHhccCCCccCCcChHHHHHHHhhhhc--CCcchhhHHHHHHHH
Q 000513 1088 NLTEELLKSLQLILKLDARVADAYCEPITQEVMRLVKANSTHIRSHVGWRTIISLLSITAR--HPEASEAGFEALAFI 1163 (1453)
Q Consensus 1088 ~l~~~ll~~L~~L~~l~~~v~~~~~~~Il~~L~~Ll~~~~~~L~s~~gW~~If~iL~~~a~--~~~~~~~aFe~L~lI 1163 (1453)
.+|+++|+||+.++...+. .++++.|++|+.++++++|++|+| ||++||++|+.++. +.+.+..||+++++|
T Consensus 13 ~fQ~~fL~Pf~~i~~~~~~--~~vre~il~ci~qil~~~~~~i~S--GW~~if~il~~aa~~~~e~lv~~af~~~~~I 86 (86)
T PF09324_consen 13 NFQKDFLKPFEYIMSNNPS--IDVRELILECILQILQSRGENIKS--GWKVIFSILRAAAKDNDESLVRLAFQIVQLI 86 (86)
T ss_pred HHHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHHHHhHHHHHh--ccHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Confidence 4699999999999865432 267899999999999999999999 99999999999987 456789999999875
No 14
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=2.5e-05 Score=95.83 Aligned_cols=348 Identities=14% Similarity=0.201 Sum_probs=220.9
Q ss_pred HHHhhchhhhhhcc-ccCCHHHHHHHHHHHHHHhhhhccC------------CC--CCCCCCchhhHHHHHHH-H--Hhh
Q 000513 977 IIQNCHIDSIFSES-KFLQAESLLDLVKALILASGRLRKG------------SS--SGEDEDTGVFCLELLIA-I--TLN 1038 (1453)
Q Consensus 977 cI~~~~i~~LF~~s-~~L~~esL~~lI~aL~~~s~~~~~~------------~~--s~~~e~~~~F~Le~lv~-v--~l~ 1038 (1453)
|+...+.|++|+.. ..|..-+|..|.-+++..|...... .+ ....+-.+...|-++.. + .++
T Consensus 844 ctLiakaDRffedacdeLcLmALgdfcvaiikaSenqlFhsvTaqkdihLaaPgevkstqdrksalhLfRigdaiirilr 923 (1777)
T KOG1846|consen 844 CTLIAKADRFFEDACDELCLMALGDFCVAIIKASENQLFHSVTAQKDIHLAAPGEVKSTQDRKSALHLFRIGDAIIRILR 923 (1777)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHhhhcceeeeeccceeeEeecCcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 56677889999886 7888899999999999887543211 00 01111112233334433 1 222
Q ss_pred cchhh----hhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcc-Cch----hHHHHHHHHHHHHHccCHHHHH
Q 000513 1039 NRDRI----MLIWHGVYEHIANIVQSTVMPSMLVEKAVFGLLRICQRLLP-YKE----NLTEELLKSLQLILKLDARVAD 1109 (1453)
Q Consensus 1039 N~~Ri----~~~W~~v~~hL~~i~~~~~~~~~l~erAv~~LlrL~~~ll~-~~e----~l~~~ll~~L~~L~~l~~~v~~ 1109 (1453)
...|- +..|+.|..||.++.+.... ..+...|+-.+..+..+++. ++| .+.+.++.||+..+.+... -+
T Consensus 924 hkaRPLlHqMfcwpLVaaHfVeasaCdkE-rhvSqiAaSaiadilTelLtdwnEpPgfhFNeaLfgPFeramclElC-dE 1001 (1777)
T KOG1846|consen 924 HKARPLLHQMFCWPLVAAHFVEASACDKE-RHVSQIAASAIADILTELLTDWNEPPGFHFNEALFGPFERAMCLELC-DE 1001 (1777)
T ss_pred hcccchhHHHHHHhhhhHHHHhHHhhhhh-hHHHHHHHHHHHHHHHHHHhccCCCCCcchhHhhhchHHHHHHHHhc-cH
Confidence 32342 25799999999988432210 12444566666666666664 223 3578999999988877431 23
Q ss_pred HhhhHHHHHHHHHHhccCCCccCCcChHHHHHHHhhhhc-CCcc--------------hhhHHHHHHHHH-hhcccCChh
Q 000513 1110 AYCEPITQEVMRLVKANSTHIRSHVGWRTIISLLSITAR-HPEA--------------SEAGFEALAFIM-SEAAHLLPS 1173 (1453)
Q Consensus 1110 ~~~~~Il~~L~~Ll~~~~~~L~s~~gW~~If~iL~~~a~-~~~~--------------~~~aFe~L~lIi-~d~~~L~~~ 1173 (1453)
++.+|.+..+.+|++.++..|.| ||+++|+-|..+.. ++.. -.-+|+.++... .|...+-..
T Consensus 1002 dtkdQflsSigeLVescadkIgS--GWkPLFgaLeaVgggnksemkaaldedysmgKghacafDVfeafLniDnipVfan 1079 (1777)
T KOG1846|consen 1002 DTKDQFLSSIGELVESCADKIGS--GWKPLFGALEAVGGGNKSEMKAALDEDYSMGKGHACAFDVFEAFLNIDNIPVFAN 1079 (1777)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--cchhhHHHHHHhcCCcHHHHHHHHhcccccccccchhhHHHHHHhccCchHhHHH
Confidence 56789999999999999999999 99999999998752 2211 123688877544 333344456
Q ss_pred hHHHHHHHHHHHHhccc--c--------------hhhhHHHHHHHHHHhHHHHHhhch-----------------hhhh-
Q 000513 1174 NFILCVDAARQFAESRV--G--------------EVDRSVSALELMAGSVVSLVRWSS-----------------EAKN- 1219 (1453)
Q Consensus 1174 n~~~~V~~L~~F~~q~~--~--------------~~~~S~~AldlL~~~~~~l~~~~~-----------------~~~~- 1219 (1453)
....||-|+-+|..... | .-+.-+.|+++|.++...+.+..+ ...+
T Consensus 1080 aalecimClmkflkgleevDckeigdcapapgapstdKOGaALdlLpncsqLiakiYkmPhkPifhlghladLprkcldq 1159 (1777)
T KOG1846|consen 1080 AALECIMCLMKFLKGLEEVDCKEIGDCAPAPGAPSTDLCLAALDLLPNCSQLIAKIYKMPHKPIFHLGHLADLPRKCLDQ 1159 (1777)
T ss_pred HHHHHHHHHHHHHhcccccccchhcccCCCCCCCcchhhHHHHHHHHhHHHHHHHHHcCCCchhhhhhhhhcchHHHHhh
Confidence 77889999999996532 0 124557899999876543322110 0000
Q ss_pred -hcchhHHh----------hh--hhhhHhhHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHH
Q 000513 1220 -AVGEEAAI----------KL--SQDIGEMWLRLVQGLKKVCLDQREEVRNHAVLALQRSLAAVDGIRLPNALWFQCFDM 1286 (1453)
Q Consensus 1220 -~~~~~~l~----------~~--~~~~~~lW~pLL~~La~lc~D~R~EVR~~AiqtLfr~L~~~~g~~l~~~~W~~~f~~ 1286 (1453)
...++..+ +. ...--++|+.++..+...-.+.-|.-...-+..+|+.|....-..+++.+-.-|..-
T Consensus 1160 samdeDgIEsphgpfpvledfdddiagiElfiiflEQicaallncppnhQknlLDlifeLLrDiskkPlGadfGgvamsa 1239 (1777)
T KOG1846|consen 1160 SAMDEDGIESPHGPFPVLEDFDDDIAGIELFIIFLEQICAALLNCPPNHQKNLLDLIFELLRDISKKPLGADFGGVAMSA 1239 (1777)
T ss_pred hhcccCCccCCCCCccccccccccchhHHHHHHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhccCCCCCCCccchhhH
Confidence 00111000 00 111237899999999888888878888888999999887333334456666778889
Q ss_pred HhHhhHHHHHHHhhhCCCccccchh--H-HHHHHHHHHHHHHHHHHHhh
Q 000513 1287 VIFTLLDDLLEIAQASSPKDYRNID--G-TLVLAMKLMSKAFLQQLQDL 1332 (1453)
Q Consensus 1287 VLFPLL~~l~~~~~~~s~~d~~~~~--E-T~~lal~lLskvFl~~l~~L 1332 (1453)
+|+|.++....-. ..|..-|+ . -..+++..-|.+...|+...
T Consensus 1240 liLPvmqkWiRRl----dkdesywdmakaifKhaIGaccelVidhiele 1284 (1777)
T KOG1846|consen 1240 LILPVMQKWIRRL----DKDESYWDMAKAIFKHAIGACCELVIDHIELE 1284 (1777)
T ss_pred HHHHHHHHHHHHh----chhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999986532 23333343 3 45778878888888877654
No 15
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=92.91 E-value=42 Score=48.58 Aligned_cols=121 Identities=11% Similarity=0.055 Sum_probs=80.1
Q ss_pred hhHhhHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHH-HHhHhhHHHHHHHhhhCCCccccch
Q 000513 1232 DIGEMWLRLVQGLKKVCLDQREEVRNHAVLALQRSLAAVDGIRLPNALWFQCFD-MVIFTLLDDLLEIAQASSPKDYRNI 1310 (1453)
Q Consensus 1232 ~~~~lW~pLL~~La~lc~D~R~EVR~~AiqtLfr~L~~~~g~~l~~~~W~~~f~-~VLFPLL~~l~~~~~~~s~~d~~~~ 1310 (1453)
.|..+|-.+-.-+.++++++..+||-.|+..|-+.-. .... . .+.+.-=|. +.|-|+..-+... . -
T Consensus 1130 ~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~-kfle-~-eEL~~f~FQkefLkPfe~im~~s------~----~ 1196 (1780)
T PLN03076 1130 VWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSM-KFLE-R-EELANYNFQNEFMKPFVIVMRKS------N----A 1196 (1780)
T ss_pred ehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHH-Hhcc-h-hhhhchhHHHHHHHHHHHHHHhc------C----c
Confidence 5889999999999999888889999999999865433 1211 1 111222233 5566666544321 1 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHHhhhcCCCchhHhhHHHHHHHHH
Q 000513 1311 DGTLVLAMKLMSKAFLQQLQDLSQQPSFCKLWLGVLDHMDKYMKLKLRGKRSDKIHELIPELLKNN 1376 (1453)
Q Consensus 1311 ~ET~~lal~lLskvFl~~l~~L~~~~~F~~lW~~iLd~l~~~~~~~~~~~~s~~l~Eav~esLKN~ 1376 (1453)
.|.+-+++..+..+...+...+.. =|..|+..+..-.. ++.+.+.+.+.+.++.+
T Consensus 1197 ~eVrE~ILeCv~qmI~s~~~nIkS------GWktIF~VLs~aa~-----d~~e~iV~lAFetl~~I 1251 (1780)
T PLN03076 1197 VEIRELIIRCVSQMVLSRVNNVKS------GWKSMFMVFTTAAY-----DDHKNIVLLAFEIIEKI 1251 (1780)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhc------CcHHHHHHHHHHHh-----CccHHHHHHHHHHHHHH
Confidence 366778889999988888877655 49999998875544 23456666666666643
No 16
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.81 E-value=1.1e+02 Score=41.85 Aligned_cols=260 Identities=12% Similarity=0.116 Sum_probs=153.9
Q ss_pred hhhHHHHHHhccCCCCcchHHHHHHHHHHHHhcCCcCCC-CcchHHHHHHHHHHHhcccccccCCCchHHHHHHHHHHHH
Q 000513 94 VYLQPFLDVIQSDETGAPITGVALSSVYKILILDVLDLD-TVNVGEAMHLIVEAVTSCRFEVTDPASEEVVLMKILQVLL 172 (1453)
Q Consensus 94 ~~l~PFl~vi~s~~t~~~iT~~AL~sl~kfl~~~~i~~~-s~~~~~a~~~i~~avt~crfe~td~~sDe~VllkiLq~l~ 172 (1453)
+++.=|...+..+ +.+|-..|+.++.-|+.|.=.+.+ -.....-+..++..+..+ -+..|+.+.--+|.+|-
T Consensus 159 ~l~~lf~q~~~d~--s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~-----i~~~d~~~a~~~l~~l~ 231 (1075)
T KOG2171|consen 159 DLLRLFSQTMTDP--SSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEV-----IQDGDDDAAKSALEALI 231 (1075)
T ss_pred HHHHHHHHhccCC--cchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhh-----hhccchHHHHHHHHHHH
Confidence 4555566667766 555888999999999987422222 112233455555555444 34455556667888888
Q ss_pred HHHccccccccChHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHccCCCCcccccccccCCCCCCCCCccc
Q 000513 173 ACMKSKAAVKLSNQHVCNIVNTCFRVVHQASSKGELLQRIARQTMHELVRCIFSHLPHIDCLEQSSALGSRSDNGNKVGL 252 (1453)
Q Consensus 173 ~~~~~~~g~~l~~~~v~~~l~~c~~l~~q~~~~se~lr~tAe~tl~~iv~~vF~rl~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1453)
.++.+.. -+-++.+.++++.|+.++.. ..+.+-.|..|=.-|......-=...+
T Consensus 232 El~e~~p--k~l~~~l~~ii~~~l~Ia~n-~~l~~~~R~~ALe~ivs~~e~Ap~~~k----------------------- 285 (1075)
T KOG2171|consen 232 ELLESEP--KLLRPHLSQIIQFSLEIAKN-KELENSIRHLALEFLVSLSEYAPAMCK----------------------- 285 (1075)
T ss_pred HHHhhch--HHHHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHhhHHHhh-----------------------
Confidence 8888853 46677999999999999985 477888887776555543322000000
Q ss_pred ccccccCCCCCCCCCCCccccCCCCccccCCCCcccccCCCCCCcccccCCCChhHHHHHHHHHHhhhcccccCCCCCCC
Q 000513 253 MEKEITSGSKPLENGNVSVERDGQSSVEANNGETTVEMGSTENGEKIMMEPFGVPCMVEIFHFLCSLLNAIENMGIGPRG 332 (1453)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pygl~~~~~lf~~L~sL~~~~~~~~~~~~~ 332 (1453)
...+||.+-+.-++...|.+..- ..|.+...
T Consensus 286 -----------------------------------------------~~~~~~~~lv~~~l~~mte~~~D--~ew~~~d~ 316 (1075)
T KOG2171|consen 286 -----------------------------------------------KLALLGHTLVPVLLAMMTEEEDD--DEWSNEDD 316 (1075)
T ss_pred -----------------------------------------------hchhhhccHHHHHHHhcCCcccc--hhhccccc
Confidence 00123322222222222222110 01100000
Q ss_pred CCCCCCCchHHHHHHHHHH-HHHhCCCCCCCchHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000513 333 NPIADDEDVPLFALSLINS-AIELGGSSIGKYPRLLVLIQDELFRYLMQFGLSMSPLILSTVCSIVLNLYHHLRVELKAQ 411 (1453)
Q Consensus 333 n~~~~~~~~~~~~L~Li~~-~le~~g~~~~~~p~l~~li~d~lc~~Ll~~~~s~~~~i~~~slri~~~L~~~~r~~Lk~q 411 (1453)
---.-.+....+|.+.|.. ++..+|..+. | .++.++-+.+.|.+..-=.++|..+..+..-..++++.+
T Consensus 317 ~ded~~~~~~~~A~~~lDrlA~~L~g~~v~--p--------~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~ 386 (1075)
T KOG2171|consen 317 LDEDDEETPYRAAEQALDRLALHLGGKQVL--P--------PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGN 386 (1075)
T ss_pred cccccccCcHHHHHHHHHHHHhcCChhheh--H--------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 0000012344566555544 3445554441 2 445566667788887777788999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCh
Q 000513 412 LEAFFSCVLLRLAQSKHGSSYQQQEVAMEALVDLCRQQ 449 (1453)
Q Consensus 412 lE~fl~~l~~~l~~~~~~~~~~~r~l~LE~l~~l~~~p 449 (1453)
+.-.+..++.-+-+ ..+--|..|+..+.++..|-
T Consensus 387 l~~Il~~Vl~~l~D----phprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 387 LPKILPIVLNGLND----PHPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred HHHHHHHHHhhcCC----CCHHHHHHHHHHHHhhhhhh
Confidence 99988887755543 34567889999998877654
No 17
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=82.53 E-value=5.4 Score=44.86 Aligned_cols=105 Identities=18% Similarity=0.219 Sum_probs=72.9
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000513 340 DVPLFALSLINSAIELGGSSIGKYPRLLVLIQDELFRYLMQFGLSMSPLILSTVCSIVLNLYHHLRVELKAQLEAFFSCV 419 (1453)
Q Consensus 340 ~~~~~~L~Li~~~le~~g~~~~~~p~l~~li~d~lc~~Ll~~~~s~~~~i~~~slri~~~L~~~~r~~Lk~qlE~fl~~l 419 (1453)
..|.-||+-|..++..+ ..-...+.+...++ .+...+...+.+....+...+|.++..|+..++.++...++.++..+
T Consensus 22 ~~r~~al~~L~~l~~~~-~~~~~~~~~~~~l~-~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~L 99 (228)
T PF12348_consen 22 EERVEALQKLRSLIKGN-APEDFPPDFVECLR-QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPL 99 (228)
T ss_dssp HHHHHHHHHHHHHHHH--B-----HHHHHHHH----HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-CccccHHHHHHHHH-HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 46899999999999888 22234577888888 55566666666666688899999999999999999999999999999
Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHHHhcChh
Q 000513 420 LLRLAQSKHGSSYQQQEVAMEALVDLCRQQS 450 (1453)
Q Consensus 420 ~~~l~~~~~~~~~~~r~l~LE~l~~l~~~p~ 450 (1453)
+.++.+++ ..-++-+.++|..++..-+
T Consensus 100 l~~~~~~~----~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 100 LKKLGDSK----KFIREAANNALDAIIESCS 126 (228)
T ss_dssp HHGGG-------HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHcccc----HHHHHHHHHHHHHHHHHCC
Confidence 88887643 3567778888877776544
No 18
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=81.09 E-value=2.8 Score=31.61 Aligned_cols=29 Identities=28% Similarity=0.195 Sum_probs=23.4
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHHh
Q 000513 1240 LVQGLKKVCLDQREEVRNHAVLALQRSLA 1268 (1453)
Q Consensus 1240 LL~~La~lc~D~R~EVR~~AiqtLfr~L~ 1268 (1453)
|+..+.+++.|+.++||..|+.+|-++..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 45567788889999999999999988764
No 19
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=79.61 E-value=40 Score=37.79 Aligned_cols=189 Identities=13% Similarity=0.171 Sum_probs=108.7
Q ss_pred CCcchHHHHHHHHHHHHhcCCcCCC-CcchHHHHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHccccccccChH
Q 000513 108 TGAPITGVALSSVYKILILDVLDLD-TVNVGEAMHLIVEAVTSCRFEVTDPASEEVVLMKILQVLLACMKSKAAVKLSNQ 186 (1453)
Q Consensus 108 t~~~iT~~AL~sl~kfl~~~~i~~~-s~~~~~a~~~i~~avt~crfe~td~~sDe~VllkiLq~l~~~~~~~~g~~l~~~ 186 (1453)
.+=..---||.-|.+++.++ ++.. .+.....+.+++.++..|- +|..+= |.-.-++++..+... .|..+ +.
T Consensus 19 ~~W~~r~~al~~L~~l~~~~-~~~~~~~~~~~~l~~~~~~i~~~l---~d~Rs~--v~~~A~~~l~~l~~~-l~~~~-~~ 90 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGN-APEDFPPDFVECLRQLLDAIIKQL---SDLRSK--VSKTACQLLSDLARQ-LGSHF-EP 90 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH--B-----HHHHHHHH---HHHHH-S----HH-----HHHHHHHHHHHHHHH-HGGGG-HH
T ss_pred cCHHHHHHHHHHHHHHHHcC-CccccHHHHHHHHHHhHHHHHHHH---hhhHHH--HHHHHHHHHHHHHHH-HhHhH-HH
Confidence 34444557999999999998 4443 3445566777777887763 344433 666777777777776 44443 34
Q ss_pred HHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHccCCCCcccccccccCCCCCCCCCcccccccccCCCCCCCC
Q 000513 187 HVCNIVNTCFRVVHQASSKGELLQRIARQTMHELVRCIFSHLPHIDCLEQSSALGSRSDNGNKVGLMEKEITSGSKPLEN 266 (1453)
Q Consensus 187 ~v~~~l~~c~~l~~q~~~~se~lr~tAe~tl~~iv~~vF~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (1453)
.+-.++..-+..+- ..+.+++.+|..||..|+..+ +
T Consensus 91 ~~~~~l~~Ll~~~~---~~~~~i~~~a~~~L~~i~~~~----~------------------------------------- 126 (228)
T PF12348_consen 91 YADILLPPLLKKLG---DSKKFIREAANNALDAIIESC----S------------------------------------- 126 (228)
T ss_dssp HHHHHHHHHHHGGG------HHHHHHHHHHHHHHHTTS------------------------------------------
T ss_pred HHHHHHHHHHHHHc---cccHHHHHHHHHHHHHHHHHC----C-------------------------------------
Confidence 46667776777664 456799999999999985421 0
Q ss_pred CCCccccCCCCccccCCCCcccccCCCCCCcccccCCCChhHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCchHHHHH
Q 000513 267 GNVSVERDGQSSVEANNGETTVEMGSTENGEKIMMEPFGVPCMVEIFHFLCSLLNAIENMGIGPRGNPIADDEDVPLFAL 346 (1453)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pygl~~~~~lf~~L~sL~~~~~~~~~~~~~n~~~~~~~~~~~~L 346 (1453)
|+ +. -++..+....+- . +-.+|..++
T Consensus 127 -------------------------------------~~-~~--~~~~~l~~~~~~---------K-----n~~vR~~~~ 152 (228)
T PF12348_consen 127 -------------------------------------YS-PK--ILLEILSQGLKS---------K-----NPQVREECA 152 (228)
T ss_dssp -------------------------------------H---H--HHHHHHHHHTT----------S------HHHHHHHH
T ss_pred -------------------------------------cH-HH--HHHHHHHHHHhC---------C-----CHHHHHHHH
Confidence 00 00 013333333221 0 135789999
Q ss_pred HHHHHHHHhCC---CCCCCchHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHH
Q 000513 347 SLINSAIELGG---SSIGKYPRLLVLIQDELFRYLMQFGLSMSPLILSTVCSIVLNLYHHLRVE 407 (1453)
Q Consensus 347 ~Li~~~le~~g---~~~~~~p~l~~li~d~lc~~Ll~~~~s~~~~i~~~slri~~~L~~~~r~~ 407 (1453)
+.+..+++..+ +.+..+. .-+.+.+.|.+.+...++.+=..+-+++..++..++..
T Consensus 153 ~~l~~~l~~~~~~~~~l~~~~-----~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 153 EWLAIILEKWGSDSSVLQKSA-----FLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HHHHHHHTT-----GGG--HH-----HHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHccchHhhhcccc-----hHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 99999999998 4443222 12677778888776667777777778888777766654
No 20
>PTZ00429 beta-adaptin; Provisional
Probab=76.72 E-value=2.8e+02 Score=37.25 Aligned_cols=149 Identities=16% Similarity=0.125 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCchHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhhcCC
Q 000513 306 VPCMVEIFHFLCSLLNAIENMGIGPRGNPIADDEDVPLFALSLINSAIELGGSSIGKYPRLLVLIQDELFRYLMQFGLSM 385 (1453)
Q Consensus 306 l~~~~~lf~~L~sL~~~~~~~~~~~~~n~~~~~~~~~~~~L~Li~~~le~~g~~~~~~p~l~~li~d~lc~~Ll~~~~s~ 385 (1453)
+.-....++-||..++. .++-.++.-|++|.. ..+ ....+. .+++..+...+.+.
T Consensus 214 l~l~~~~~~~Ll~~L~e--------------~~EW~Qi~IL~lL~~----y~P--~~~~e~-----~~il~~l~~~Lq~~ 268 (746)
T PTZ00429 214 IESSNEWVNRLVYHLPE--------------CNEWGQLYILELLAA----QRP--SDKESA-----ETLLTRVLPRMSHQ 268 (746)
T ss_pred hHHHHHHHHHHHHHhhc--------------CChHHHHHHHHHHHh----cCC--CCcHHH-----HHHHHHHHHHhcCC
Confidence 34457888888877653 235567788887733 111 112222 35556666666677
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHh-cChhHHHHHHHccCCCCC
Q 000513 386 SPLILSTVCSIVLNLYHHLRVELKAQLEAFFSCVLLRLAQSKHGSSYQQQEVAMEALVDLC-RQQSFMSEMYANFDCDIT 464 (1453)
Q Consensus 386 ~~~i~~~slri~~~L~~~~r~~Lk~qlE~fl~~l~~~l~~~~~~~~~~~r~l~LE~l~~l~-~~p~~~~~lf~NYDCd~~ 464 (1453)
++.|+=.+.+++..+.......+..++-.=+...+..|.. ++.+.|.++|..+..+. +.|.++..-+..|=|-.+
T Consensus 269 N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s----s~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~ 344 (746)
T PTZ00429 269 NPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSR----RDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYS 344 (746)
T ss_pred CHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC----CCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccC
Confidence 7777767788887766433223333322112222233422 34688999998886554 356655543333222222
Q ss_pred -CCchHHHHHHHHHhccCCC
Q 000513 465 -CGNLFEDLTNLLSKSAFPV 483 (1453)
Q Consensus 465 -~~nlfe~l~~~L~k~~~p~ 483 (1453)
-..+=..=++.|.+.+.+.
T Consensus 345 Dp~yIK~~KLeIL~~Lane~ 364 (746)
T PTZ00429 345 DPPFVKLEKLRLLLKLVTPS 364 (746)
T ss_pred CcHHHHHHHHHHHHHHcCcc
Confidence 1123334444555555443
No 21
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=76.34 E-value=1.8e+02 Score=36.71 Aligned_cols=137 Identities=17% Similarity=0.125 Sum_probs=72.1
Q ss_pred cccCCHHHHHHHHHHHHHHhhhhccCCCCCCCCCchhhHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHh--ccCC-Chh
Q 000513 990 SKFLQAESLLDLVKALILASGRLRKGSSSGEDEDTGVFCLELLIAITLNNRDRIMLIWHGVYEHIANIVQ--STVM-PSM 1066 (1453)
Q Consensus 990 s~~L~~esL~~lI~aL~~~s~~~~~~~~s~~~e~~~~F~Le~lv~v~l~N~~Ri~~~W~~v~~hL~~i~~--~~~~-~~~ 1066 (1453)
...+|.++|..+|..||....-. .+....-=++.|.-+ .-.+......|-+++. +... ...
T Consensus 207 y~~iP~~sl~~~i~vLCsi~~~~---------------~l~~~~w~~m~nL~~-S~~g~~~i~~L~~iL~~~~~~~~~~~ 270 (464)
T PF11864_consen 207 YGDIPSESLSPCIEVLCSIVNSV---------------SLCKPSWRTMRNLLK-SHLGHSAIRTLCDILRSPDPQNKRDI 270 (464)
T ss_pred cCcCChHHHHHHHHHHhhHhccc---------------ccchhHHHHHHHHHc-CccHHHHHHHHHHHHcccCccccccH
Confidence 46789999999999999864211 011111113334333 2235555566666662 2211 111
Q ss_pred HHHHHHHHHHHHHHHhccCch--hH---HHHHHHHHHHHHccCHHHHHHhhhHHHHHHHHHH-hccCCCccCCcChHHHH
Q 000513 1067 LVEKAVFGLLRICQRLLPYKE--NL---TEELLKSLQLILKLDARVADAYCEPITQEVMRLV-KANSTHIRSHVGWRTII 1140 (1453)
Q Consensus 1067 l~erAv~~LlrL~~~ll~~~e--~l---~~~ll~~L~~L~~l~~~v~~~~~~~Il~~L~~Ll-~~~~~~L~s~~gW~~If 1140 (1453)
-.-|+++.+++.+..-...+. .+ ...++.+|..-++.+..+ +.-.|+..+..++ ++++..+. ...|..++
T Consensus 271 ~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~---v~~eIl~~i~~ll~~~~~~~l~-~~~W~~~~ 346 (464)
T PF11864_consen 271 NVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPR---VDYEILLLINRLLDGKYGRELS-EEDWDIIL 346 (464)
T ss_pred HHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCe---ehHHHHHHHHHHHhHhhhhhhc-ccCchHHH
Confidence 223343333333221110011 11 123666666666544322 2335778888888 77776653 46999999
Q ss_pred HHHhhh
Q 000513 1141 SLLSIT 1146 (1453)
Q Consensus 1141 ~iL~~~ 1146 (1453)
.++...
T Consensus 347 ~i~~~~ 352 (464)
T PF11864_consen 347 DIIEEI 352 (464)
T ss_pred HHHHHH
Confidence 999864
No 22
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.23 E-value=2.2e+02 Score=37.43 Aligned_cols=115 Identities=18% Similarity=0.171 Sum_probs=68.0
Q ss_pred cChHHHHHHHhhhhcCCcch---hhHHHHHHHHHhhcccCChhhH----HHHHHHHHHHHhcccchhhhHHHHHHHHHHh
Q 000513 1134 VGWRTIISLLSITARHPEAS---EAGFEALAFIMSEAAHLLPSNF----ILCVDAARQFAESRVGEVDRSVSALELMAGS 1206 (1453)
Q Consensus 1134 ~gW~~If~iL~~~a~~~~~~---~~aFe~L~lIi~d~~~L~~~n~----~~~V~~L~~F~~q~~~~~~~S~~AldlL~~~ 1206 (1453)
.-|+-+|..|..-....... +.+.+++-.||.| +.|+.+ -..+..+....+.....-+.-+.|+..|.++
T Consensus 125 n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~---i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~ns 201 (859)
T KOG1241|consen 125 NQWPELIVTLVSNVGEEQASMVKESSLEALGYICED---IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNS 201 (859)
T ss_pred hhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc---CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHH
Confidence 38999999998765544444 6689999999986 445432 2233333333322211123445566666555
Q ss_pred HHHHHhhchhhhhhcchhHHhhhhhhhHhhHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHh
Q 000513 1207 VVSLVRWSSEAKNAVGEEAAIKLSQDIGEMWLRLVQGLKKVCLDQREEVRNHAVLALQRSLA 1268 (1453)
Q Consensus 1207 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~lW~pLL~~La~lc~D~R~EVR~~AiqtLfr~L~ 1268 (1453)
..+... ..+.+. .. -++++...+....|..+||..|+++|-|++.
T Consensus 202 Lef~~~--------nF~~E~---er------n~iMqvvcEatq~~d~~i~~aa~~ClvkIm~ 246 (859)
T KOG1241|consen 202 LEFTKA--------NFNNEM---ER------NYIMQVVCEATQSPDEEIQVAAFQCLVKIMS 246 (859)
T ss_pred HHHHHH--------hhccHh---hh------ceeeeeeeecccCCcHHHHHHHHHHHHHHHH
Confidence 443211 001110 00 1366777777778889999999999999887
No 23
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.78 E-value=3.5e+02 Score=37.99 Aligned_cols=38 Identities=32% Similarity=0.382 Sum_probs=34.3
Q ss_pred hhHhhHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhh
Q 000513 1232 DIGEMWLRLVQGLKKVCLDQREEVRNHAVLALQRSLAA 1269 (1453)
Q Consensus 1232 ~~~~lW~pLL~~La~lc~D~R~EVR~~AiqtLfr~L~~ 1269 (1453)
.+...|--+|+=|-++..|..+|+-.+||..+|..+.+
T Consensus 1096 ~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1096 GFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred cHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999988873
No 24
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=64.33 E-value=1.7e+02 Score=33.95 Aligned_cols=138 Identities=12% Similarity=0.134 Sum_probs=79.0
Q ss_pred HhhhHHHHHHHHHHhccCCCccCCcChHHHHHHHhhhh--cCCcchhhHHHHHHHHHhhcccCChhhHHHHHHHHHHHH-
Q 000513 1110 AYCEPITQEVMRLVKANSTHIRSHVGWRTIISLLSITA--RHPEASEAGFEALAFIMSEAAHLLPSNFILCVDAARQFA- 1186 (1453)
Q Consensus 1110 ~~~~~Il~~L~~Ll~~~~~~L~s~~gW~~If~iL~~~a--~~~~~~~~aFe~L~lIi~d~~~L~~~n~~~~V~~L~~F~- 1186 (1453)
..|..+.+-+..+++.+...+++ .|=.-|.+++...- ++|.-.-.+|+.+..|++.+. + .+....+.+++..|-
T Consensus 97 ~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~-~-~~~~e~lFd~~~cYFP 173 (262)
T PF14500_consen 97 STRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD-I-SEFAEDLFDVFSCYFP 173 (262)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc-c-chhHHHHHHHhhheee
Confidence 34555666666667666655532 34455666666554 577778889999999988765 2 455555666654443
Q ss_pred ---h-cccchhhhHHHHHHHHHHhHHHHHhhchhhhhhcchhHHhhhhhhhHhhHHH-HHHHHHhhhcCCcHHHHHHHHH
Q 000513 1187 ---E-SRVGEVDRSVSALELMAGSVVSLVRWSSEAKNAVGEEAAIKLSQDIGEMWLR-LVQGLKKVCLDQREEVRNHAVL 1261 (1453)
Q Consensus 1187 ---~-q~~~~~~~S~~AldlL~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~lW~p-LL~~La~lc~D~R~EVR~~Aiq 1261 (1453)
+ ...|. ...++-||-.....++.. ...+..+-+| |+.+|..- -+.|+.-+++
T Consensus 174 I~F~pp~~dp--~~IT~edLk~~L~~cl~s-----------------~~~fa~~~~p~LleKL~s~----~~~~K~D~L~ 230 (262)
T PF14500_consen 174 ITFRPPPNDP--YGITREDLKRALRNCLSS-----------------TPLFAPFAFPLLLEKLDST----SPSVKLDSLQ 230 (262)
T ss_pred eeeeCCCCCC--CCCCHHHHHHHHHHHhcC-----------------cHhhHHHHHHHHHHHHcCC----CcHHHHHHHH
Confidence 1 11121 122333443333333321 1122333344 44555432 4559999999
Q ss_pred HHHHHHhhhcCCC
Q 000513 1262 ALQRSLAAVDGIR 1274 (1453)
Q Consensus 1262 tLfr~L~~~~g~~ 1274 (1453)
||..++. .||..
T Consensus 231 tL~~c~~-~y~~~ 242 (262)
T PF14500_consen 231 TLKACIE-NYGAD 242 (262)
T ss_pred HHHHHHH-HCCHH
Confidence 9999999 78753
No 25
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=58.20 E-value=73 Score=34.83 Aligned_cols=86 Identities=19% Similarity=0.221 Sum_probs=66.8
Q ss_pred hhcccCCCCChhhhhHHHHHHhccCCCCcchHHHHHHHHHHHHhcCCcCCCCcchHHHHHHHHHHHhcccccccCCCchH
Q 000513 82 LWQNQWHKVDPAVYLQPFLDVIQSDETGAPITGVALSSVYKILILDVLDLDTVNVGEAMHLIVEAVTSCRFEVTDPASEE 161 (1453)
Q Consensus 82 ~~~~~~~~~d~~~~l~PFl~vi~s~~t~~~iT~~AL~sl~kfl~~~~i~~~s~~~~~a~~~i~~avt~crfe~td~~sDe 161 (1453)
.|..+++.+|-..||-=|.+..+ +|.-|-.=+|...+..++.. .....+...+.+++-.+..+. ...|.
T Consensus 26 ~W~~~~e~Ldy~~~Lpif~dGL~--Et~~Py~flA~~g~~dll~~----~~~~kilPvlPqLI~plk~AL-----~tr~~ 94 (183)
T PF10274_consen 26 QWKVDPEKLDYHHYLPIFFDGLR--ETEHPYRFLARQGIKDLLER----GGGEKILPVLPQLIIPLKRAL-----NTRDP 94 (183)
T ss_pred EEecChhhcchhhHHHHHHhhhh--ccCccHHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHHHHH-----hCCCH
Confidence 35468889999989988999998 55889999999999999988 233445667788877776653 33456
Q ss_pred HHHHHHHHHHHHHHccc
Q 000513 162 VVLMKILQVLLACMKSK 178 (1453)
Q Consensus 162 ~VllkiLq~l~~~~~~~ 178 (1453)
.|.-.+|++|..++.+.
T Consensus 95 ~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 95 EVFCATLKALQQLVTSS 111 (183)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 68899999999888774
No 26
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=55.58 E-value=1e+02 Score=32.19 Aligned_cols=75 Identities=12% Similarity=0.082 Sum_probs=52.7
Q ss_pred HHHHHHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcC
Q 000513 374 LFRYLMQFGL-SMSPLILSTVCSIVLNLYHHLRVELKAQL--EAFFSCVLLRLAQSKHGSSYQQQEVAMEALVDLCRQ 448 (1453)
Q Consensus 374 lc~~Ll~~~~-s~~~~i~~~slri~~~L~~~~r~~Lk~ql--E~fl~~l~~~l~~~~~~~~~~~r~l~LE~l~~l~~~ 448 (1453)
..++|-+-+. +.++.+.-.+|.++-.++.+.+.++..|+ .-|+..++.+++..+...+..-|.-+|+++..|...
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 3344444444 34566777789999999999999999888 578887333444433334567788999999988753
No 27
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.37 E-value=4.5e+02 Score=37.31 Aligned_cols=59 Identities=24% Similarity=0.333 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHHhhhcCCCchhHhhHHHHHHHHHHHh
Q 000513 1310 IDGTLVLAMKLMSKAFLQQLQDLSQQPSFCKLWLGVLDHMDKYMKLKLRGKRSDKIHELIPELLKNNLLV 1379 (1453)
Q Consensus 1310 ~~ET~~lal~lLskvFl~~l~~L~~~~~F~~lW~~iLd~l~~~~~~~~~~~~s~~l~Eav~esLKN~Llv 1379 (1453)
-+++|..|+++++++|..+-..+. +++..+|..+|..+. +++.++.-+..++-|+.|+-
T Consensus 272 ~~~~Rl~a~~lvg~~~~~~~~~l~--~~~~~~~~~fl~r~~---------D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 272 QEEVRLKAVKLVGRMFSDKDSQLS--ETYDDLWSAFLGRFN---------DISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhc--ccchHHHHHHHHHhc---------cCChhhhhhHHHHhHHHHhc
Confidence 478999999999999999998887 789999998887552 34666666777777777655
No 28
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=49.47 E-value=1.4e+02 Score=31.46 Aligned_cols=72 Identities=7% Similarity=0.036 Sum_probs=53.9
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhc
Q 000513 373 ELFRYLMQFGLSMSPLILSTVCSIVLNLYHHLRVELKAQL--EAFFSCVLLRLAQSKHGSSYQQQEVAMEALVDLCR 447 (1453)
Q Consensus 373 ~lc~~Ll~~~~s~~~~i~~~slri~~~L~~~~r~~Lk~ql--E~fl~~l~~~l~~~~~~~~~~~r~l~LE~l~~l~~ 447 (1453)
+..++|-+-+.+.++.+.-.+|.++-.++.+.+.++..|+ +-|+..+...+.. + ...+-|.-+|+.+..|..
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~-~--~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLIND-R--VHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcc-c--CCHHHHHHHHHHHHHHHH
Confidence 4445555555666777777899999999999999998888 7788886655544 3 456778889999988753
No 29
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=47.17 E-value=16 Score=34.86 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhcCCcccccHHHHHHHHHHHH
Q 000513 863 MALTTLFTIANRYGDYIHSGWKNILDCVLSLH 894 (1453)
Q Consensus 863 la~~~Lf~ia~~~G~~L~~sW~~Il~~i~~L~ 894 (1453)
+.++.+..+....|+.++.||+.|+.++....
T Consensus 37 ~il~ci~qil~~~~~~i~SGW~~if~il~~aa 68 (86)
T PF09324_consen 37 LILECILQILQSRGENIKSGWKVIFSILRAAA 68 (86)
T ss_pred HHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH
Confidence 35677888899999999999999999997554
No 30
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.79 E-value=7.1e+02 Score=33.22 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=43.5
Q ss_pred HHHHHHHHhhcccCChhhHHHHHHHHHHHHhcccchhhhHHHHHHHHHHhHHHHHhhchhhhhhcchhHHhhhhhhhHhh
Q 000513 1157 FEALAFIMSEAAHLLPSNFILCVDAARQFAESRVGEVDRSVSALELMAGSVVSLVRWSSEAKNAVGEEAAIKLSQDIGEM 1236 (1453)
Q Consensus 1157 Fe~L~lIi~d~~~L~~~n~~~~V~~L~~F~~q~~~~~~~S~~AldlL~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~l 1236 (1453)
|||+.-|++=. -...=....|++|..|..++.. |+-..||+.|--.+.. +... .+.+.
T Consensus 295 YE~V~TI~~I~--~~~~LrvlainiLgkFL~n~d~--NirYvaLn~L~r~V~~-------d~~a---------vqrHr-- 352 (866)
T KOG1062|consen 295 YECVRTIMDIR--SNSGLRVLAINILGKFLLNRDN--NIRYVALNMLLRVVQQ-------DPTA---------VQRHR-- 352 (866)
T ss_pred HHHHHHHHhcc--CCchHHHHHHHHHHHHhcCCcc--ceeeeehhhHHhhhcC-------CcHH---------HHHHH--
Confidence 66666665311 1112245677888888877643 5555666554322110 0000 00000
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHh
Q 000513 1237 WLRLVQGLKKVCLDQREEVRNHAVLALQRSLA 1268 (1453)
Q Consensus 1237 W~pLL~~La~lc~D~R~EVR~~AiqtLfr~L~ 1268 (1453)
. .+.++-.||..-+|..|+.-+|+++.
T Consensus 353 -~----tIleCL~DpD~SIkrralELs~~lvn 379 (866)
T KOG1062|consen 353 -S----TILECLKDPDVSIKRRALELSYALVN 379 (866)
T ss_pred -H----HHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 1 12233347777788888777777665
No 31
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=44.26 E-value=2.2e+02 Score=29.76 Aligned_cols=75 Identities=9% Similarity=0.000 Sum_probs=54.4
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhccCC--CCCCHHHHHHHHHHHHHHhc
Q 000513 373 ELFRYLMQFGLSMSPLILSTVCSIVLNLYHHLRVELKAQL--EAFFSCVLLRLAQSK--HGSSYQQQEVAMEALVDLCR 447 (1453)
Q Consensus 373 ~lc~~Ll~~~~s~~~~i~~~slri~~~L~~~~r~~Lk~ql--E~fl~~l~~~l~~~~--~~~~~~~r~l~LE~l~~l~~ 447 (1453)
+..++|.+-+.+.++.+.-++|.+.-.++.+.+..+..|+ .-|++.++..+.... ...+..-|.-+|+.+..|..
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3445556666677777777889999999999999888888 678988776553211 12456778889999987764
No 32
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=43.97 E-value=3e+02 Score=29.12 Aligned_cols=105 Identities=14% Similarity=0.234 Sum_probs=63.0
Q ss_pred HHhhhcCCcHHHHHHHHHHHHHHHhhhcC--CCCChHHHHHHHHHHhHhhHHHHHHHhhh-CCCcccc-chhHHHHHHHH
Q 000513 1244 LKKVCLDQREEVRNHAVLALQRSLAAVDG--IRLPNALWFQCFDMVIFTLLDDLLEIAQA-SSPKDYR-NIDGTLVLAMK 1319 (1453)
Q Consensus 1244 La~lc~D~R~EVR~~AiqtLfr~L~~~~g--~~l~~~~W~~~f~~VLFPLL~~l~~~~~~-~s~~d~~-~~~ET~~lal~ 1319 (1453)
+..+....+.-=|+.|++.|-+++. ... ..++...|..+|+ -||-.+..=.+.... .+..... .-.++|...+.
T Consensus 9 ~~~~L~S~k~keR~~al~~L~~il~-~~~~~~~l~~k~~~~ife-aL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a 86 (155)
T PF11640_consen 9 ILRLLSSDKIKERNKALEDLRHILS-SPPRVDSLNDKQWHSIFE-ALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCA 86 (155)
T ss_pred HHHHHhccccchHHHHHHHHHHHHc-CccccccCCcchHHHHHH-HHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHH
Confidence 3344445567779999999999998 333 6788999999997 666766654333211 1112222 24577777777
Q ss_pred HHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHH
Q 000513 1320 LMSKAFLQQLQDLSQQPSFCKLWLGVLDHMDKYMK 1354 (1453)
Q Consensus 1320 lLskvFl~~l~~L~~~~~F~~lW~~iLd~l~~~~~ 1354 (1453)
.+-+.|......-...-. -..+++++-..|.
T Consensus 87 ~~lR~~ve~~~~~~k~kt----~~~Ll~hI~~~l~ 117 (155)
T PF11640_consen 87 SALRLFVEKSNSRLKRKT----VKALLDHITDLLP 117 (155)
T ss_pred HHHHHHHHHHHhhcccch----HHHHHHHHHHHhh
Confidence 777777665543222223 3444555555555
No 33
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=39.10 E-value=2.5e+02 Score=29.24 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=53.4
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhccCCCCCCHH--HHHHHHHHHHHHhc
Q 000513 373 ELFRYLMQFGLSMSPLILSTVCSIVLNLYHHLRVELKAQL--EAFFSCVLLRLAQSKHGSSYQ--QQEVAMEALVDLCR 447 (1453)
Q Consensus 373 ~lc~~Ll~~~~s~~~~i~~~slri~~~L~~~~r~~Lk~ql--E~fl~~l~~~l~~~~~~~~~~--~r~l~LE~l~~l~~ 447 (1453)
+..+.|-+-+.+.++.+--.++.++-.++.+.+.++..|+ .-|+..+...+..... ..+ -|+-+++.+..|-.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~--~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKT--DPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTT--HHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCC--CchhHHHHHHHHHHHHHHH
Confidence 3444555555677777878889999999999999999888 6688887655554432 222 68888999987754
No 34
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=36.67 E-value=85 Score=37.05 Aligned_cols=66 Identities=21% Similarity=0.197 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHHHHhhhcCCC-CChHHH--HHHHHHHhHhhHHHHHHHhhhCCCccccchhHHHHHHHHHHHHHHHHH
Q 000513 1252 REEVRNHAVLALQRSLAAVDGIR-LPNALW--FQCFDMVIFTLLDDLLEIAQASSPKDYRNIDGTLVLAMKLMSKAFLQQ 1328 (1453)
Q Consensus 1252 R~EVR~~AiqtLfr~L~~~~g~~-l~~~~W--~~~f~~VLFPLL~~l~~~~~~~s~~d~~~~~ET~~lal~lLskvFl~~ 1328 (1453)
..+||..|++.+|.++. .||.. ++...+ ......-+..++.+..+. . -.|.+..|+.|+||+++..
T Consensus 77 ~~~v~~~al~~l~Dll~-~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~------~----~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 77 DEEVKITALKALFDLLL-THGIDIFDSESDNDESVDSKSLLKILTKFLDS------E----NPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred CHHHHHHHHHHHHHHHH-HcCchhccchhccCccchHhHHHHHHHHHHhc------C----CHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999 88854 443344 223333344444444432 1 3468889999999988863
No 35
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.41 E-value=9.5e+02 Score=30.68 Aligned_cols=146 Identities=15% Similarity=0.113 Sum_probs=83.8
Q ss_pred HHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHhHhhHHHHHHHhhhCCCccccchhHHHHH
Q 000513 1238 LRLVQGLKKVCL-DQREEVRNHAVLALQRSLAAVDGIRLPNALWFQCFDMVIFTLLDDLLEIAQASSPKDYRNIDGTLVL 1316 (1453)
Q Consensus 1238 ~pLL~~La~lc~-D~R~EVR~~AiqtLfr~L~~~~g~~l~~~~W~~~f~~VLFPLL~~l~~~~~~~s~~d~~~~~ET~~l 1316 (1453)
..+|..|..+-. .+..-+|+-|.=++-+|-. -....-+.+++--|+|.|-.+++.. | -.|+..
T Consensus 320 ~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA------G~~~qiqaVida~l~p~Li~~l~~~------e----f~~rKE 383 (514)
T KOG0166|consen 320 SGALPVLSNLLSSSPKESIKKEACWTISNITA------GNQEQIQAVIDANLIPVLINLLQTA------E----FDIRKE 383 (514)
T ss_pred cChHHHHHHHhccCcchhHHHHHHHHHHHhhc------CCHHHHHHHHHcccHHHHHHHHhcc------c----hHHHHH
Confidence 346777777777 5555599999999998877 2356778999999999999998743 2 234444
Q ss_pred HHHHHHHHHH----HHHHhhhCCcchHHHHHHHHHHHHHHHHhhhcCCCchhHhhHHHHHHHHHHHhhhhcC--------
Q 000513 1317 AMKLMSKAFL----QQLQDLSQQPSFCKLWLGVLDHMDKYMKLKLRGKRSDKIHELIPELLKNNLLVMKTTG-------- 1384 (1453)
Q Consensus 1317 al~lLskvFl----~~l~~L~~~~~F~~lW~~iLd~l~~~~~~~~~~~~s~~l~Eav~esLKN~Llvm~~~g-------- 1384 (1453)
|+-.++.+-. ....-|.+. +++..+..++... ...+..++.+.|.|+|.+-...+
T Consensus 384 AawaIsN~ts~g~~~qi~yLv~~--------giI~plcdlL~~~-----D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~ 450 (514)
T KOG0166|consen 384 AAWAISNLTSSGTPEQIKYLVEQ--------GIIKPLCDLLTCP-----DVKIILVALDGLENILKVGEAEKNRGTNPLA 450 (514)
T ss_pred HHHHHHhhcccCCHHHHHHHHHc--------CCchhhhhcccCC-----ChHHHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 4444443211 011111111 1222222222210 22335567777777777633222
Q ss_pred -------CcCCCC---CCCccchHHHHHHHHHHhchhh
Q 000513 1385 -------ILLPTD---DIGGDSFWQLTWLHVKKISPSM 1412 (1453)
Q Consensus 1385 -------~l~~~~---~~~~~~lW~~Tw~~i~~~~P~L 1412 (1453)
-+.... ..+..++++...+.|+++++.=
T Consensus 451 ~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 451 IMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 111111 1124589999999999998864
No 36
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.32 E-value=8e+02 Score=32.09 Aligned_cols=95 Identities=20% Similarity=0.183 Sum_probs=56.7
Q ss_pred HHHHHHHHHhh----cccCChhhHHHHHHHHHHHHhcc----cc------hhhhHHHHHHHHHHhHHHHHhhchhhhhhc
Q 000513 1156 GFEALAFIMSE----AAHLLPSNFILCVDAARQFAESR----VG------EVDRSVSALELMAGSVVSLVRWSSEAKNAV 1221 (1453)
Q Consensus 1156 aFe~L~lIi~d----~~~L~~~n~~~~V~~L~~F~~q~----~~------~~~~S~~AldlL~~~~~~l~~~~~~~~~~~ 1221 (1453)
=++|+..|.+- +....+..|..|++.+.+-..+- .+ ..+.-..|+|++.+.+.-+..-
T Consensus 582 LLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~-------- 653 (885)
T KOG2023|consen 582 LLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSH-------- 653 (885)
T ss_pred HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhc--------
Confidence 36777777654 24455678888988887543221 10 0133456888888765544320
Q ss_pred chhHHhhhhhhhHhhHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 000513 1222 GEEAAIKLSQDIGEMWLRLVQGLKKVCLDQREEVRNHAVLALQRSL 1267 (1453)
Q Consensus 1222 ~~~~l~~~~~~~~~lW~pLL~~La~lc~D~R~EVR~~AiqtLfr~L 1267 (1453)
.+.+. .. . -|+.-|..++.|+-||||++|...|=..-
T Consensus 654 -ie~Lv---a~-s----nl~~lll~C~~D~~peVRQS~FALLGDlt 690 (885)
T KOG2023|consen 654 -IEPLV---AQ-S----NLLDLLLQCLQDEVPEVRQSAFALLGDLT 690 (885)
T ss_pred -hHHHh---hh-c----cHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 01110 00 0 16677778888999999999987665433
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=31.61 E-value=1.2e+03 Score=29.57 Aligned_cols=35 Identities=14% Similarity=0.299 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 000513 1045 LIWHGVYEHIANIVQSTVMPSMLVEKAVFGLLRICQR 1081 (1453)
Q Consensus 1045 ~~W~~v~~hL~~i~~~~~~~~~l~erAv~~LlrL~~~ 1081 (1453)
.+.+.+...+...+.++. +.+|.+|+.++.++...
T Consensus 110 ~~~~~l~~~v~~ll~~~~--~~VRk~A~~~l~~i~~~ 144 (526)
T PF01602_consen 110 EMAEPLIPDVIKLLSDPS--PYVRKKAALALLKIYRK 144 (526)
T ss_dssp HHHHHHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhcCCc--hHHHHHHHHHHHHHhcc
Confidence 456677777777777653 47888899899888654
No 38
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=30.60 E-value=2.2e+02 Score=33.82 Aligned_cols=128 Identities=16% Similarity=0.206 Sum_probs=76.0
Q ss_pred CchHHHHHHHHHHHHHhCCCCCCCchHHHHHHH---HHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000513 339 EDVPLFALSLINSAIELGGSSIGKYPRLLVLIQ---DELFRYLMQFGLSMSPLILSTVCSIVLNLYHHLRVELKAQLEAF 415 (1453)
Q Consensus 339 ~~~~~~~L~Li~~~le~~g~~~~~~p~l~~li~---d~lc~~Ll~~~~s~~~~i~~~slri~~~L~~~~r~~Lk~qlE~f 415 (1453)
+.+..+.|.+|.-++..... ..+-+...-+ ...+..+++.+.+++..+-..+++++..|+..-...-..-.+-+
T Consensus 71 ~d~v~yvL~li~dll~~~~~---~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~ 147 (312)
T PF03224_consen 71 DDTVQYVLTLIDDLLSDDPS---RVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEA 147 (312)
T ss_dssp HHHHHHHHHHHHHHHH-SSS---SHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHH---HHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHH
Confidence 46788999999998888762 2344444333 34788888877778888888999999998875443333311223
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcChhHHHHHHHccCCCCCCCchHHHHHHHHH
Q 000513 416 FSCVLLRLAQSKHGSSYQQQEVAMEALVDLCRQQSFMSEMYANFDCDITCGNLFEDLTNLLS 477 (1453)
Q Consensus 416 l~~l~~~l~~~~~~~~~~~r~l~LE~l~~l~~~p~~~~~lf~NYDCd~~~~nlfe~l~~~L~ 477 (1453)
+..++.-+.+.-.+...+-+..++.+|..+.+.+.+=.- |.+ .+....+...|.
T Consensus 148 l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~-f~~-------~~~v~~l~~iL~ 201 (312)
T PF03224_consen 148 LPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQV-FWK-------SNGVSPLFDILR 201 (312)
T ss_dssp HHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHH-HHT-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHH-HHh-------cCcHHHHHHHHH
Confidence 333333333211112234568999999999999988444 444 566667777664
No 39
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=30.49 E-value=1.8e+02 Score=31.97 Aligned_cols=90 Identities=14% Similarity=0.184 Sum_probs=66.7
Q ss_pred hhhhHHHHHHhccCCCCcchHHHHHHHHHHHHhcCCcCCCCcchHHHHHHHHHHHhcccccccCCCchHHHHHHHHHHHH
Q 000513 93 AVYLQPFLDVIQSDETGAPITGVALSSVYKILILDVLDLDTVNVGEAMHLIVEAVTSCRFEVTDPASEEVVLMKILQVLL 172 (1453)
Q Consensus 93 ~~~l~PFl~vi~s~~t~~~iT~~AL~sl~kfl~~~~i~~~s~~~~~a~~~i~~avt~crfe~td~~sDe~VllkiLq~l~ 172 (1453)
..|+..+|..|-++ ++++--+|+.-|.-.+.+|+++|.. ++..++.- .||+. +.+-=+-.+++.
T Consensus 7 Qryl~~Il~~~~~~--~~~vr~~Al~~l~~il~qGLvnP~~-----cvp~lIAL-------~ts~~--~~ir~~A~~~l~ 70 (187)
T PF12830_consen 7 QRYLKNILELCLSS--DDSVRLAALQVLELILRQGLVNPKQ-----CVPTLIAL-------ETSPN--PSIRSRAYQLLK 70 (187)
T ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHhcCCCChHH-----HHhHhhhh-------hCCCC--hHHHHHHHHHHH
Confidence 46889999999988 8899999999999999999999963 66655542 24544 447777778887
Q ss_pred HHHccccccccChHHHHHHHHHHHHHhh
Q 000513 173 ACMKSKAAVKLSNQHVCNIVNTCFRVVH 200 (1453)
Q Consensus 173 ~~~~~~~g~~l~~~~v~~~l~~c~~l~~ 200 (1453)
.+... ++..+.. ...+-++.+|....
T Consensus 71 ~l~eK-~~s~v~~-~~~~gi~~af~~~~ 96 (187)
T PF12830_consen 71 ELHEK-HESLVES-RYSEGIRLAFDYQR 96 (187)
T ss_pred HHHHH-hHHHHHH-HHHHHHHHHHHHHH
Confidence 77766 4344444 56677888887754
No 40
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=30.04 E-value=1e+03 Score=28.45 Aligned_cols=238 Identities=14% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCCch--HHHHHHHHHHHHHHHHhhcCCc----------hHHHHHH----------------HHHHH
Q 000513 347 SLINSAIELGGSSIGKYP--RLLVLIQDELFRYLMQFGLSMS----------PLILSTV----------------CSIVL 398 (1453)
Q Consensus 347 ~Li~~~le~~g~~~~~~p--~l~~li~d~lc~~Ll~~~~s~~----------~~i~~~s----------------lri~~ 398 (1453)
++|..++..+|....++| ..+..||..+.+.+-..+.... ++++... +.++.
T Consensus 18 ~~i~~~v~~~G~~~~~~~~~~~lr~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~ 97 (319)
T PF08767_consen 18 QIISQAVAESGEIATKTPKVRLLRTIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMA 97 (319)
T ss_dssp HHHHHHHHHH-GGGGGSHHHHHHHHHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHH
T ss_pred HHHHHHHHhcCchhhccHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCCCCHHHHHHHHHHHHHHhcC--hhHHHHHHHccCCCCCCCchHHHHH
Q 000513 399 NLYHHLRVELKAQLEAFFSCVLLRLAQ---SKHGSSYQQQEVAMEALVDLCRQ--QSFMSEMYANFDCDITCGNLFEDLT 473 (1453)
Q Consensus 399 ~L~~~~r~~Lk~qlE~fl~~l~~~l~~---~~~~~~~~~r~l~LE~l~~l~~~--p~~~~~lf~NYDCd~~~~nlfe~l~ 473 (1453)
+++..++..+..++..++..++...++ .+...-+++|.-..+.|..+++. +.++. --++.|+.++
T Consensus 98 ~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~----------lp~~~f~~~i 167 (319)
T PF08767_consen 98 TIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQ----------LPPEQFKLVI 167 (319)
T ss_dssp HHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHH----------S-HHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHc----------CCHHHHHHHH
Q ss_pred HHHHhccCCCCCCchhhhHHHHHHHHHHHHHHHH---hhhcCCCCCCCCCCCcccccccccccCCCCCCCCCchHHHHHH
Q 000513 474 NLLSKSAFPVNGPLSAMHVLALDGMISMVQGMAE---RISNEFPAPEGATVDPEEYNAFWTLKCSDYSDPNNWIPFVRKM 550 (1453)
Q Consensus 474 ~~L~k~~~p~~~~~~~~~~l~L~~l~~~i~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 550 (1453)
+.+..... .+...+.-.||+++..++..+.. ... ..+-++
T Consensus 168 dsi~wg~k---h~~~~I~~~~L~~l~~ll~~~~~~~~~~~----------------------------------~~F~~~ 210 (319)
T PF08767_consen 168 DSIVWGFK---HTNREISETGLNILLELLNNVSKTNPEFA----------------------------------NQFYQQ 210 (319)
T ss_dssp HHHHHHHT---SSSHHHHHHHHHHHHHHHHHHHH-SHHHH----------------------------------HHHHHH
T ss_pred HHHHHHhC---CCcHHHHHHHHHHHHHHHHHHHhcCHHHH----------------------------------HHHHHH
Q ss_pred HHHHHHHHHHHhhhcCChhhhHH----------HHHhCCCCCCCCCh----------HHHHHHhhhc-CCCCHHHHHhhh
Q 000513 551 KYIKRKLMVGADHFNRDPKKGLE----------FLQGMHLLPDKLDP----------QSVALFFRYT-VGLDKNLIGDFL 609 (1453)
Q Consensus 551 k~~K~~~~~~~~~Fn~~pk~gi~----------~l~~~~~~~~~~~~----------~~ia~fl~~~-~~l~k~~ige~l 609 (1453)
-.....-..-.-.....-|.|++ .+++.|.++.|.-+ +.++..|.+. |.++.++|..|+
T Consensus 211 y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~l~~~qi~~fv 290 (319)
T PF08767_consen 211 YYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFPNLSPKQIENFV 290 (319)
T ss_dssp HHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-TTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q ss_pred c-------CCChhhHHHHHHHHhcCCCCC
Q 000513 610 G-------NHDEFCVQVLHEFAGTFNFRG 631 (1453)
Q Consensus 610 ~-------~~~~~~~~vl~~f~~~fdf~~ 631 (1453)
. ++..|...+.+=-++.=.|.|
T Consensus 291 ~~Lf~~~~d~~~Fk~~lrDFlI~~kef~g 319 (319)
T PF08767_consen 291 QGLFELNNDPEKFKTHLRDFLIQLKEFSG 319 (319)
T ss_dssp HHHHHTTT-HHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhhhccC
No 41
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=29.44 E-value=3.4e+02 Score=27.92 Aligned_cols=73 Identities=12% Similarity=0.108 Sum_probs=52.9
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhc
Q 000513 374 LFRYLMQFGLSMSPLILSTVCSIVLNLYHHLRVELKAQL--EAFFSCVLLRLAQSKHGSSYQQQEVAMEALVDLCR 447 (1453)
Q Consensus 374 lc~~Ll~~~~s~~~~i~~~slri~~~L~~~~r~~Lk~ql--E~fl~~l~~~l~~~~~~~~~~~r~l~LE~l~~l~~ 447 (1453)
..+.|-+-+.+.++.+--.++.+.-.++.+...++..|+ .-|+..++ .+...+...+.+-|.-++|++..|..
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~-~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELV-KIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHH-HHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 344555555666777777889999999999988888888 46888855 44443323567888999999988765
No 42
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=28.14 E-value=9e+02 Score=30.26 Aligned_cols=124 Identities=19% Similarity=0.238 Sum_probs=81.8
Q ss_pred CchHHHHHHHHHHHHHhCCCCCCCchHHHHHHHH------HHHHHHHHhhcCCchHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000513 339 EDVPLFALSLINSAIELGGSSIGKYPRLLVLIQD------ELFRYLMQFGLSMSPLILSTVCSIVLNLYHH-LRVELKAQ 411 (1453)
Q Consensus 339 ~~~~~~~L~Li~~~le~~g~~~~~~p~l~~li~d------~lc~~Ll~~~~s~~~~i~~~slri~~~L~~~-~r~~Lk~q 411 (1453)
+.+....|.||.-++... |....+..+ +.+...+..+..++..|...+++++..|+.. ....-...
T Consensus 68 ~d~vqyvL~Li~dll~~~-------~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~ 140 (429)
T cd00256 68 DDTVRYVLTLIDDMLQED-------DTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSD 140 (429)
T ss_pred HHHHHHHHHHHHHHHHhc-------hHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhH
Confidence 567888899999888774 433333332 3567777777778888999999998888752 11111234
Q ss_pred HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcChhHHHHHHHccCCCCCCCchHHHHHHHHHhcc
Q 000513 412 LEAFFSCVLLRLAQSKHGSSYQQQEVAMEALVDLCRQQSFMSEMYANFDCDITCGNLFEDLTNLLSKSA 480 (1453)
Q Consensus 412 lE~fl~~l~~~l~~~~~~~~~~~r~l~LE~l~~l~~~p~~~~~lf~NYDCd~~~~nlfe~l~~~L~k~~ 480 (1453)
++.|++.+...+-.. .+..-+..++.+|..+.+.+.+ +.+|.+.+ .++.++..|...+
T Consensus 141 l~~~~~~l~~~l~~~---~~~~~~~~~v~~L~~LL~~~~~-R~~f~~~~-------~v~~L~~~L~~~~ 198 (429)
T cd00256 141 LDYYFNWLKEQLNNI---TNNDYVQTAARCLQMLLRVDEY-RFAFVLAD-------GVPTLVKLLSNAT 198 (429)
T ss_pred HHHHHHHHHHHhhcc---CCcchHHHHHHHHHHHhCCchH-HHHHHHcc-------CHHHHHHHHhhcc
Confidence 555666655443322 1334567888999999999988 47777765 3577777776543
No 43
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=27.63 E-value=6e+02 Score=26.17 Aligned_cols=71 Identities=10% Similarity=0.103 Sum_probs=49.8
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhc
Q 000513 375 FRYLMQFGLSMSPLILSTVCSIVLNLYHHLRVELKAQL--EAFFSCVLLRLAQSKHGSSYQQQEVAMEALVDLCR 447 (1453)
Q Consensus 375 c~~Ll~~~~s~~~~i~~~slri~~~L~~~~r~~Lk~ql--E~fl~~l~~~l~~~~~~~~~~~r~l~LE~l~~l~~ 447 (1453)
.++|-+-+.+.++.+.-.++.+.-.++.+.+..+..|+ +-|+..+.. +..+++ ...+-|.-+++++..|..
T Consensus 39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~-l~~~~~-~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 39 VRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVK-LIKPKY-PLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHH-HHcCCC-CcHHHHHHHHHHHHHHHH
Confidence 34455555667777777889999999999888888777 668887664 444443 223367778888877644
No 44
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=27.33 E-value=7.9e+02 Score=33.87 Aligned_cols=97 Identities=15% Similarity=0.092 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhCCcchHHHHHHHHHHHHHHHHhhhcCCCchhHhhHHHHHHHHHHHhhhhcCCcCCC
Q 000513 1310 IDGTLVLAMKLMSKAFLQQLQDLSQQPSFCKLWLGVLDHMDKYMKLKLRGKRSDKIHELIPELLKNNLLVMKTTGILLPT 1389 (1453)
Q Consensus 1310 ~~ET~~lal~lLskvFl~~l~~L~~~~~F~~lW~~iLd~l~~~~~~~~~~~~s~~l~Eav~esLKN~Llvm~~~g~l~~~ 1389 (1453)
|.|.|...+..+.++....- .+.....+.+.-..+|.-|+.|.- +.|++=+.-+.|++..++..++.-+.+...|.+.
T Consensus 771 ~a~aR~~~V~al~~v~~~~~-~~~~~~~~~k~~e~LL~~lddYtt-d~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~ 848 (1133)
T KOG1943|consen 771 WAEARQQNVKALAHVCKTVT-SLLFSESIEKFRETLLNALDDYTT-DSRGDVGSWVREAAMKALSSLLDTLSSPKLLDED 848 (1133)
T ss_pred cHHHHHHHHHHHHHHHHHHH-HhhccccHHHHHHHHHHHHhhccc-ccCccHHHHHHHHHHHHHHhhhhhhcCcccccHH
Confidence 99999998888877665543 233345788888899999998874 2223334567888888888887776664444332
Q ss_pred CC-CCccchHHHHHHHHHHh
Q 000513 1390 DD-IGGDSFWQLTWLHVKKI 1408 (1453)
Q Consensus 1390 ~~-~~~~~lW~~Tw~~i~~~ 1408 (1453)
.- +--.-+-..+.++|++.
T Consensus 849 ~i~~~~~~~vqQ~veKIdrl 868 (1133)
T KOG1943|consen 849 SINRIIRYFVQQAVEKIDRL 868 (1133)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 10 00112455666777766
No 45
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=26.83 E-value=6.5e+02 Score=27.34 Aligned_cols=130 Identities=21% Similarity=0.166 Sum_probs=66.6
Q ss_pred hcCCcHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHhHhhHHHHHHHhhhCCCccccchhHHHHHHHHHHHHHHHH
Q 000513 1248 CLDQREEVRNHAVLALQRSLAAVDGIRLPNALWFQCFDMVIFTLLDDLLEIAQASSPKDYRNIDGTLVLAMKLMSKAFLQ 1327 (1453)
Q Consensus 1248 c~D~R~EVR~~AiqtLfr~L~~~~g~~l~~~~W~~~f~~VLFPLL~~l~~~~~~~s~~d~~~~~ET~~lal~lLskvFl~ 1327 (1453)
-.|.-.|+|+.|..+++..|. .-...++ +..+++.|+--| .| -.+-++++...+.|+-..
T Consensus 36 ~vDDGLelRK~ayE~lytlLd-~~~~~~~---~~~~~~~v~~GL-------------~D---~~DIk~L~~~~l~kl~~~ 95 (169)
T PF08623_consen 36 KVDDGLELRKAAYECLYTLLD-TCLSRID---ISEFLDRVEAGL-------------KD---EHDIKMLCHLMLSKLAQL 95 (169)
T ss_dssp EEEGGGHHHHHHHHHHHHHHH-STCSSS----HHHHHHHHHHTT-------------SS----HHHHHHHHHHHHHHHHS
T ss_pred eecCcHHHHHHHHHHHHHHHH-HHHHhCC---HHHHHHHHHhhc-------------CC---cHHHHHHHHHHHHHHHHh
Confidence 457789999999999998888 3333333 333344333222 22 245667777777776433
Q ss_pred HHHhh-hCCcchHHHHHHHHHHHHHHHHhhhcCCCchhHhhHHHHHHHHHHHhhhhcCCcCCCCCCCcc-chHHHHHHHH
Q 000513 1328 QLQDL-SQQPSFCKLWLGVLDHMDKYMKLKLRGKRSDKIHELIPELLKNNLLVMKTTGILLPTDDIGGD-SFWQLTWLHV 1405 (1453)
Q Consensus 1328 ~l~~L-~~~~~F~~lW~~iLd~l~~~~~~~~~~~~s~~l~Eav~esLKN~Llvm~~~g~l~~~~~~~~~-~lW~~Tw~~i 1405 (1453)
.-..+ ..++.+..-+...|. .+.+.+-..+=.|-.-|..|.+|.++.+-+--.+.. ... .-|..-|+.+
T Consensus 96 ~p~~v~~~Ld~l~~~l~~~L~-------~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~--~~~~~~~~~f~~~i 166 (169)
T PF08623_consen 96 APEEVLQRLDSLVEPLRKTLS-------KKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGA--ESSPNKWNEFVEWI 166 (169)
T ss_dssp -HHHHHHCCTTTHHHHHHHHH-----------TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS---SSSH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhh-------ccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCccc--ccCHHHHHHHHHHH
Confidence 33222 335666666665554 221122221223445566666666655431111221 122 3798888877
Q ss_pred H
Q 000513 1406 K 1406 (1453)
Q Consensus 1406 ~ 1406 (1453)
.
T Consensus 167 ~ 167 (169)
T PF08623_consen 167 K 167 (169)
T ss_dssp H
T ss_pred h
Confidence 5
No 46
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=25.34 E-value=71 Score=26.13 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=21.8
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHH
Q 000513 1239 RLVQGLKKVCLDQREEVRNHAVLAL 1263 (1453)
Q Consensus 1239 pLL~~La~lc~D~R~EVR~~AiqtL 1263 (1453)
.+...+.+-+.|+.+.||..|++.+
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4778888889999999999999864
No 47
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=25.33 E-value=1.6e+03 Score=29.12 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHh
Q 000513 1235 EMWLRLVQGLKKVCLDQREEVRNHAVLALQRSLA 1268 (1453)
Q Consensus 1235 ~lW~pLL~~La~lc~D~R~EVR~~AiqtLfr~L~ 1268 (1453)
.+---++-.+.+.-.|..+|||+.|+.+|.+.=.
T Consensus 291 ~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~s 324 (569)
T KOG1242|consen 291 LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGS 324 (569)
T ss_pred HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 3444488889999999999999999999986543
No 48
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.37 E-value=1.8e+03 Score=29.41 Aligned_cols=185 Identities=21% Similarity=0.298 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHccCHHHHHHhhhHHHHHHHHHHhccCC
Q 000513 1049 GVYEHIANIVQSTVMPSMLVEKAVFGLLRICQRLLPYKENLTEELLKSLQLILKLDARVADAYCEPITQEVMRLVKANST 1128 (1453)
Q Consensus 1049 ~v~~hL~~i~~~~~~~~~l~erAv~~LlrL~~~ll~~~e~l~~~ll~~L~~L~~l~~~v~~~~~~~Il~~L~~Ll~~~~~ 1128 (1453)
.+.+-+..+++++. ++++.|||.-+.++. +.|.|.++..|=+--+.|=.-++.|.. -.+.-+.+|-+.+..
T Consensus 144 DLa~Dv~tLL~ssk--pYvRKkAIl~lykvF---LkYPeAlr~~FprL~EkLeDpDp~V~S----AAV~VICELArKnPk 214 (877)
T KOG1059|consen 144 DLADDVFTLLNSSK--PYVRKKAILLLYKVF---LKYPEALRPCFPRLVEKLEDPDPSVVS----AAVSVICELARKNPQ 214 (877)
T ss_pred HHHHHHHHHHhcCc--hHHHHHHHHHHHHHH---HhhhHhHhhhHHHHHHhccCCCchHHH----HHHHHHHHHHhhCCc
Confidence 44444445555543 578999999888885 457777766554433333333344432 133344455555554
Q ss_pred Cc------------cCCcChHHHHHHHhhhhc----CCc-----------------chhhHHHHHHHHHhh-c-cc--CC
Q 000513 1129 HI------------RSHVGWRTIISLLSITAR----HPE-----------------ASEAGFEALAFIMSE-A-AH--LL 1171 (1453)
Q Consensus 1129 ~L------------~s~~gW~~If~iL~~~a~----~~~-----------------~~~~aFe~L~lIi~d-~-~~--L~ 1171 (1453)
+. .|...|-.| .||...+. .|. +...-|||+.-|+.- . .. -.
T Consensus 215 nyL~LAP~ffkllttSsNNWmLI-KiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~ 293 (877)
T KOG1059|consen 215 NYLQLAPLFYKLLVTSSNNWVLI-KLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDH 293 (877)
T ss_pred ccccccHHHHHHHhccCCCeehH-HHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCc
Confidence 32 223366532 33332221 121 223458999888754 1 11 22
Q ss_pred hhhHHHHHHHHHHHHhcccchhhhHHHHHHHHHHhHHHHHhhchhhhhhcchhHHhhhhhhhHhhHHHHHHHHHhhhcCC
Q 000513 1172 PSNFILCVDAARQFAESRVGEVDRSVSALELMAGSVVSLVRWSSEAKNAVGEEAAIKLSQDIGEMWLRLVQGLKKVCLDQ 1251 (1453)
Q Consensus 1172 ~~n~~~~V~~L~~F~~q~~~~~~~S~~AldlL~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~lW~pLL~~La~lc~D~ 1251 (1453)
......||.-|+.|.+-. +..++=|+++.- .+...-+... ...+..+ +|.+ -.|.
T Consensus 294 ~asiqLCvqKLr~fieds----DqNLKYlgLlam-----~KI~ktHp~~---------Vqa~kdl---Ilrc----L~Dk 348 (877)
T KOG1059|consen 294 SASIQLCVQKLRIFIEDS----DQNLKYLGLLAM-----SKILKTHPKA---------VQAHKDL---ILRC----LDDK 348 (877)
T ss_pred HHHHHHHHHHHhhhhhcC----CccHHHHHHHHH-----HHHhhhCHHH---------HHHhHHH---HHHH----hccC
Confidence 345778999999999754 334455555431 1211111111 1111111 3332 2478
Q ss_pred cHHHHHHHHHHHHHHHh
Q 000513 1252 REEVRNHAVLALQRSLA 1268 (1453)
Q Consensus 1252 R~EVR~~AiqtLfr~L~ 1268 (1453)
.+.||-.|+..|+-++.
T Consensus 349 D~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 349 DESIRLRALDLLYGMVS 365 (877)
T ss_pred CchhHHHHHHHHHHHhh
Confidence 89999999999988776
No 49
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=23.93 E-value=4.1e+02 Score=27.37 Aligned_cols=92 Identities=12% Similarity=0.082 Sum_probs=57.2
Q ss_pred hhhhHHHHHHhccCCCCcchHHHHHHHHHHHHhcCCcCCCCcchHHHHHHHHHHHhcccccccCCCchHHHHHHHHHHHH
Q 000513 93 AVYLQPFLDVIQSDETGAPITGVALSSVYKILILDVLDLDTVNVGEAMHLIVEAVTSCRFEVTDPASEEVVLMKILQVLL 172 (1453)
Q Consensus 93 ~~~l~PFl~vi~s~~t~~~iT~~AL~sl~kfl~~~~i~~~s~~~~~a~~~i~~avt~crfe~td~~sDe~VllkiLq~l~ 172 (1453)
.+...-+.+.|++.+.+++ -|+.+|.|=|.|+ +..|+++-|.+|.
T Consensus 18 ~~~il~icd~I~~~~~~~k---~a~raL~krl~~~--------------------------------n~~vql~AL~lLd 62 (133)
T cd03561 18 WALNLELCDLINLKPNGPK---EAARAIRKKIKYG--------------------------------NPHVQLLALTLLE 62 (133)
T ss_pred HHHHHHHHHHHhCCCCCHH---HHHHHHHHHHcCC--------------------------------CHHHHHHHHHHHH
Confidence 4566667788877644433 4666666666552 1348889999999
Q ss_pred HHHccccccccChHHHH-HHHHHHHHHhhccCCccHHHHHHHHHHHHHH
Q 000513 173 ACMKSKAAVKLSNQHVC-NIVNTCFRVVHQASSKGELLQRIARQTMHEL 220 (1453)
Q Consensus 173 ~~~~~~~g~~l~~~~v~-~~l~~c~~l~~q~~~~se~lr~tAe~tl~~i 220 (1453)
+|+++ +|..++.+... +-+..-..++...+...+-+++-+-..++.-
T Consensus 63 ~~vkN-cg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 63 LLVKN-CGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAW 110 (133)
T ss_pred HHHHh-CChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 99999 77777776666 5555555555421134555555555555544
No 50
>PTZ00429 beta-adaptin; Provisional
Probab=22.96 E-value=2e+03 Score=29.43 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHH
Q 000513 1236 MWLRLVQGLKKVCLDQREEVRNHAVLALQRSLAAVDGIRLPNALWFQCFDM 1286 (1453)
Q Consensus 1236 lW~pLL~~La~lc~D~R~EVR~~AiqtLfr~L~~~~g~~l~~~~W~~~f~~ 1286 (1453)
+.-++...+.+.+.|+.+-||+.|+-++.++.. .+........|...+.+
T Consensus 137 i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~-~~pelv~~~~~~~~L~~ 186 (746)
T PTZ00429 137 VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFH-DDMQLFYQQDFKKDLVE 186 (746)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hCcccccccchHHHHHH
Confidence 444677888888889999999999999999887 44444444456554443
No 51
>cd06571 Bac_DnaA_C C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Probab=22.74 E-value=3e+02 Score=26.24 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=40.2
Q ss_pred HHHHHhhhcCChhhhHHHHHhCCCCCCCCChHHHHHHhh-hcCCCCHHHHHhhhcCCChhhHHHHHHH
Q 000513 557 LMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFR-YTVGLDKNLIGDFLGNHDEFCVQVLHEF 623 (1453)
Q Consensus 557 ~~~~~~~Fn~~pk~gi~~l~~~~~~~~~~~~~~ia~fl~-~~~~l~k~~ige~l~~~~~~~~~vl~~f 623 (1453)
+...++.|+-++. .+...+--..-..|..||.||- ...++.-..||.+||+.+. ..|.++.
T Consensus 5 i~~Va~~~~v~~~----~i~~~~R~~~~~~aR~ia~yl~~~~~~~s~~~Ig~~fg~r~h--StV~~a~ 66 (90)
T cd06571 5 IEAVAEYFGISVE----DLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDH--STVLHAV 66 (90)
T ss_pred HHHHHHHhCCCHH----HHhcCCCCcCcchHHHHHHHHHHHHhCCCHHHHHHHhCCCCH--hHHHHHH
Confidence 3455677876655 3444433333346789999965 4569999999999997664 5555543
No 52
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=22.65 E-value=2.4e+02 Score=35.76 Aligned_cols=40 Identities=20% Similarity=0.460 Sum_probs=30.5
Q ss_pred HHhhhcCCChhhHHHHHHHHhcCCCCCCChHHHHHHHHccc
Q 000513 605 IGDFLGNHDEFCVQVLHEFAGTFNFRGMNLDTALRLFLGTF 645 (1453)
Q Consensus 605 ige~l~~~~~~~~~vl~~f~~~fdf~~~~i~~alR~~l~~f 645 (1453)
|..-||++..| ..-|++|++.|.|+-..=++=+-.+++.|
T Consensus 392 Le~~lG~~~~F-d~FLr~Yv~kfa~ksI~t~dfld~Lye~f 431 (613)
T KOG1047|consen 392 LEQLLGDPTRF-DPFLRAYVHKFAFKSILTQDFLDFLYEYF 431 (613)
T ss_pred HHHHhCChhhH-HHHHHHHHHHhccceecHHHHHHHHHHhC
Confidence 45668888876 67899999999998877666666666655
No 53
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=22.31 E-value=3.2e+02 Score=29.67 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=54.3
Q ss_pred HHHHHHHHhcccccccCCCchHHHHHHHHHHH-HHHHccccccccChHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHH
Q 000513 140 MHLIVEAVTSCRFEVTDPASEEVVLMKILQVL-LACMKSKAAVKLSNQHVCNIVNTCFRVVHQASSKGELLQRIARQTMH 218 (1453)
Q Consensus 140 ~~~i~~avt~crfe~td~~sDe~VllkiLq~l-~~~~~~~~g~~l~~~~v~~~l~~c~~l~~q~~~~se~lr~tAe~tl~ 218 (1453)
.++.+.++-..--++.+..+|+ |..+++|.| ..|+++ ...-++=+...++-.+.|+-.-. --+...+|+.-.-+|+
T Consensus 145 YEqM~~~~qdnp~~~e~~~~d~-~kf~vfQ~imd~~F~s-F~~~i~~~~f~~lT~~i~sWvEe-hckp~~lr~i~~g~l~ 221 (229)
T KOG1319|consen 145 YEQMVKAHQDNPHEGEDQVSDQ-VKFNVFQGIMDSLFQS-FNASISVASFQELTACVFSWIEE-HCKPQTLREIVIGVLH 221 (229)
T ss_pred HHHHHHhcccCCCcchhhhhhH-HHHHHHHHHHHHHHHH-hhccCcHHHHHHHHHHHHHHHHH-hCCcccHHHHHHHHHH
Confidence 4445555544444555666775 889999965 456666 55567778888887777776432 1357788999999999
Q ss_pred HHH
Q 000513 219 ELV 221 (1453)
Q Consensus 219 ~iv 221 (1453)
+|-
T Consensus 222 qMp 224 (229)
T KOG1319|consen 222 QMP 224 (229)
T ss_pred Hcc
Confidence 884
No 54
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=22.28 E-value=3.9e+02 Score=28.10 Aligned_cols=62 Identities=16% Similarity=0.227 Sum_probs=44.4
Q ss_pred CchHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHHHHHH
Q 000513 339 EDVPLFALSLINSAIELGGSSIGKYPRLLVLIQDELFRYLMQFGLS-MSPLILSTVCSIVLNLYHHLR 405 (1453)
Q Consensus 339 ~~~~~~~L~Li~~~le~~g~~~~~~p~l~~li~d~lc~~Ll~~~~s-~~~~i~~~slri~~~L~~~~r 405 (1453)
..+...+|.|+++.++|+|..| ...+...+....|.+++.. ....|=..++.++......|+
T Consensus 51 ~~v~l~AL~LLe~~vkNCG~~f-----h~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 51 PNVQLRALTLLDACAENCGKRF-----HQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHHHHHHHHCCHHH-----HHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 3568999999999999999988 2344556666666666644 445666677777776666665
No 55
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=21.98 E-value=6.8e+02 Score=30.05 Aligned_cols=106 Identities=15% Similarity=0.125 Sum_probs=67.5
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCchHHHH-HHHHHHHHHHHHhhcCCchHHHHHHHHHHHH-HHH--HHHHHHHHHH--H
Q 000513 340 DVPLFALSLINSAIELGGSSIGKYPRLLV-LIQDELFRYLMQFGLSMSPLILSTVCSIVLN-LYH--HLRVELKAQL--E 413 (1453)
Q Consensus 340 ~~~~~~L~Li~~~le~~g~~~~~~p~l~~-li~d~lc~~Ll~~~~s~~~~i~~~slri~~~-L~~--~~r~~Lk~ql--E 413 (1453)
++|..-+..+-+.++.+...+ ... +-+.+++..+++.+..+...++..++.++.. ++. .+....|..+ |
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~-----~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~ 203 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPEL-----KRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNE 203 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHH-----HHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCH
Confidence 788888888888887764333 122 2345568899999988877887777766653 222 4556666666 6
Q ss_pred HHHHHHHHHhccCCCC-CCHHHHHHHHHHHHHHhcChhH
Q 000513 414 AFFSCVLLRLAQSKHG-SSYQQQEVAMEALVDLCRQQSF 451 (1453)
Q Consensus 414 ~fl~~l~~~l~~~~~~-~~~~~r~l~LE~l~~l~~~p~~ 451 (1453)
.++..|.. +...... ....-++++-|+|..+|.+|..
T Consensus 204 ~~L~~l~~-Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 204 WTLSQLAS-LYSRDGEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred HHHHHHHH-HhcccCCcccchHHHHHHHHHHHHhcCCCc
Confidence 66766654 4333221 1234467778888888877765
No 56
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=21.90 E-value=6.2e+02 Score=31.05 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=30.2
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHh
Q 000513 1241 VQGLKKVCLDQREEVRNHAVLALQRSLAAVDGIRLPNALWFQCFDMVI 1288 (1453)
Q Consensus 1241 L~~La~lc~D~R~EVR~~AiqtLfr~L~~~~g~~l~~~~W~~~f~~VL 1288 (1453)
++.|...-.-|.++||+.-+..||.+|. +++..|..-|....
T Consensus 242 lksLv~~L~~p~~~ir~~Ildll~dllr------ik~p~w~~~~~~~~ 283 (371)
T PF14664_consen 242 LKSLVDSLRLPNPEIRKAILDLLFDLLR------IKPPSWTESFLAGR 283 (371)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHC------CCCCCcccchhhcc
Confidence 4444444456899999999999999998 44557777665443
No 57
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=21.89 E-value=5.8e+02 Score=26.71 Aligned_cols=72 Identities=10% Similarity=0.074 Sum_probs=53.6
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhc
Q 000513 373 ELFRYLMQFGLSMSPLILSTVCSIVLNLYHHLRVELKAQL--EAFFSCVLLRLAQSKHGSSYQQQEVAMEALVDLCR 447 (1453)
Q Consensus 373 ~lc~~Ll~~~~s~~~~i~~~slri~~~L~~~~r~~Lk~ql--E~fl~~l~~~l~~~~~~~~~~~r~l~LE~l~~l~~ 447 (1453)
+..++|-+-+.+.++.+.-++|.+.-.++.+.+.++..|+ .-|+..+...+ ... .+..-|.-+|+.+..|..
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~-~~~--~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLI-KTT--KNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHH-ccc--CCHHHHHHHHHHHHHHHH
Confidence 4455555666666777777889999999999888888887 67888876544 332 466778889999988764
No 58
>smart00760 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding.
Probab=21.29 E-value=2.1e+02 Score=25.14 Aligned_cols=53 Identities=19% Similarity=0.323 Sum_probs=36.5
Q ss_pred HHHHHhhhcCChhhhHHHHHhCCCCCCCCChHHHHHHhh-hcCCCCHHHHHhhhcCCC
Q 000513 557 LMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFR-YTVGLDKNLIGDFLGNHD 613 (1453)
Q Consensus 557 ~~~~~~~Fn~~pk~gi~~l~~~~~~~~~~~~~~ia~fl~-~~~~l~k~~ige~l~~~~ 613 (1453)
+...++.|+-+++. |...+--+.-..|..||.||- ...+++-..||.+||+++
T Consensus 6 ~~~Va~~~~i~~~~----i~s~~R~~~~~~aR~iamyla~~~~~~sl~~Ig~~fg~rd 59 (60)
T smart00760 6 IEAVAEYFGVKPED----LKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRD 59 (60)
T ss_pred HHHHHHHhCCCHHH----HhcCCCCcchhHHHHHHHHHHHHHHCCCHHHHHHHhCCCC
Confidence 44567788887762 434433333335788999964 457999999999999654
No 59
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.59 E-value=1.4e+03 Score=30.38 Aligned_cols=149 Identities=17% Similarity=0.194 Sum_probs=75.2
Q ss_pred CchhHHHHHHHHHHHHHccCHHHHHHhhhHHHHHHHHHHhccCCCccCCcChHHHHHHHhhhh-----cCCcchhhHHHH
Q 000513 1085 YKENLTEELLKSLQLILKLDARVADAYCEPITQEVMRLVKANSTHIRSHVGWRTIISLLSITA-----RHPEASEAGFEA 1159 (1453)
Q Consensus 1085 ~~e~l~~~ll~~L~~L~~l~~~v~~~~~~~Il~~L~~Ll~~~~~~L~s~~gW~~If~iL~~~a-----~~~~~~~~aFe~ 1159 (1453)
+.+.+..++++.+..++.+.+. ..+.++|++-+...+..-.+ ..- +=..|=.++...- ++...-..+++.
T Consensus 34 t~~~F~eeflr~vn~il~vkKr--esi~dRIl~fla~fv~sl~q-~d~--e~DlV~~~f~hlLRg~Eskdk~VRfrvlqi 108 (892)
T KOG2025|consen 34 TAHEFSEEFLRVVNYILLVKKR--ESIPDRILSFLARFVESLPQ-LDK--EEDLVAGTFYHLLRGTESKDKKVRFRVLQI 108 (892)
T ss_pred hHhhhHHHHHHHHHHheeeccC--CCcHHHHHHHHHHHHHhhhc-cCc--hhhHHHHHHHHHHhcccCcchhHHHHHHHH
Confidence 3456777888888877655321 12334555555555444322 111 2223333333222 222222345566
Q ss_pred HHHHHhhcccCChhhHHHHHHHHHHHHhcccchhhhHHHHHHHHHHhHHHHHhhchhhhhhcchhHHhhhhhhhHhhHHH
Q 000513 1160 LAFIMSEAAHLLPSNFILCVDAARQFAESRVGEVDRSVSALELMAGSVVSLVRWSSEAKNAVGEEAAIKLSQDIGEMWLR 1239 (1453)
Q Consensus 1160 L~lIi~d~~~L~~~n~~~~V~~L~~F~~q~~~~~~~S~~AldlL~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~lW~p 1239 (1453)
+..+++....++.+-|-.+...+..=..-+. .+.-.+|+-.|. +... ...+++ +|
T Consensus 109 la~l~d~~~eidd~vfn~l~e~l~~Rl~Dre--p~VRiqAv~aLs-------rlQ~----d~~dee------------~~ 163 (892)
T KOG2025|consen 109 LALLSDENAEIDDDVFNKLNEKLLIRLKDRE--PNVRIQAVLALS-------RLQG----DPKDEE------------CP 163 (892)
T ss_pred HHHHhccccccCHHHHHHHHHHHHHHHhccC--chHHHHHHHHHH-------HHhc----CCCCCc------------cc
Confidence 6666666677888888877776644333222 244445553332 2110 001111 23
Q ss_pred HHHHHHhhhc-CCcHHHHHHHHHHH
Q 000513 1240 LVQGLKKVCL-DQREEVRNHAVLAL 1263 (1453)
Q Consensus 1240 LL~~La~lc~-D~R~EVR~~AiqtL 1263 (1453)
+...|..+.. ||.+|||..|+..+
T Consensus 164 v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 164 VVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 4444455444 99999999998754
No 60
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=20.38 E-value=1.2e+02 Score=25.67 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=21.8
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 000513 1239 RLVQGLKKVCLDQREEVRNHAVLALQR 1265 (1453)
Q Consensus 1239 pLL~~La~lc~D~R~EVR~~AiqtLfr 1265 (1453)
.++..|..+-.|+.++||..|+..|-+
T Consensus 28 ~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 28 ELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 466667777788999999999988854
No 61
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=20.05 E-value=3.4e+02 Score=33.89 Aligned_cols=78 Identities=23% Similarity=0.395 Sum_probs=54.9
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHhHhhHHHHHHHhhhCCCccccchhHHHHHHHH
Q 000513 1240 LVQGLKKVCLDQREEVRNHAVLALQRSLAAVDGIRLPNALWFQCFDMVIFTLLDDLLEIAQASSPKDYRNIDGTLVLAMK 1319 (1453)
Q Consensus 1240 LL~~La~lc~D~R~EVR~~AiqtLfr~L~~~~g~~l~~~~W~~~f~~VLFPLL~~l~~~~~~~s~~d~~~~~ET~~lal~ 1319 (1453)
+...|.....+.+.+=|++|++-|...+- +| .|+ .|+.+|.++|.-+++-+.+... +--+.+|+.
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~--e~-sfs--vWeq~f~~iL~~l~EvL~d~~~----------~~~k~laLr 352 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLC--EG-SFS--VWEQHFAEILLLLLEVLSDSED----------EIIKKLALR 352 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHH--cc-chh--HHHHHHHHHHHHHHHHHccchh----------hHHHHHHHH
Confidence 44555556667899999999999998777 22 355 9999999999888888754211 113567777
Q ss_pred HHHHHHHHHHHhh
Q 000513 1320 LMSKAFLQQLQDL 1332 (1453)
Q Consensus 1320 lLskvFl~~l~~L 1332 (1453)
.|.++....=..|
T Consensus 353 vL~~ml~~Q~~~l 365 (516)
T KOG2956|consen 353 VLREMLTNQPARL 365 (516)
T ss_pred HHHHHHHhchHhh
Confidence 7777666544444
Done!