Query 000513
Match_columns 1453
No_of_seqs 316 out of 1107
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 17:14:50 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000513.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_286-290//hhsearch_pdb/000513hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ltl_A Brefeldin A-inhibited g 1.0 1 1 475.8 20.1 196 547-744 12-209 (211)
2 1r8s_E ARNO; protein transport 1.0 1 1 475.1 20.7 195 548-744 7-201 (203)
3 1ku1_A ARF guanine-nucleotide 1.0 1 1 473.4 19.0 195 547-744 17-227 (230)
4 1xsz_A Guanine nucleotide exch 1.0 1 1 447.8 18.8 191 553-743 7-200 (356)
5 2r09_A Cytohesin-3; autoinhibi 1.0 1 1 443.6 21.8 192 551-744 12-203 (347)
6 3tjz_B Coatomer subunit gamma; 1.0 1 1 24.0 9.3 86 1155-1266 266-351 (355)
7 1ibr_B P95, importin beta-1 su 1.0 1 1 22.1 17.9 29 1240-1268 409-437 (462)
8 4fdd_A Transportin-1; heat rep 1.0 1 1 21.7 29.4 100 339-449 188-287 (852)
9 2qk2_A LP04448P; mini spindles 1.0 1 1 21.4 20.1 117 1233-1381 92-208 (242)
10 1qgr_A Protein (importin beta 1.0 1 1 20.5 29.8 98 340-447 145-246 (876)
No 1
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=1.00 E-value=1 Score=475.77 Aligned_cols=196 Identities=41% Similarity=0.737 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 99999999999898764158914159999838999999995789899641289997899863159972469999999851
Q 000513 547 VRKMKYIKRKLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGDFLGNHDEFCVQVLHEFAGT 626 (1453)
Q Consensus 547 l~~~k~~K~~~~~~~~~FN~~pk~Gi~~l~~~g~l~~~~~p~~ia~fl~~~~~l~k~~ige~l~~~~~~~~~vl~~f~~~ 626 (1453)
++.+|.+|+.+.+|+.+||+|||+||+||+++|++++ +|++||+||+++++|||++||||||++++||.+||++|++.
T Consensus 12 ~~~~k~rK~~~~~g~~~FN~~PkkGi~~L~~~g~i~~--~p~~iA~FL~~~~~L~k~~igeyLg~~~~fn~~vL~~yv~~ 89 (211)
T 3ltl_A 12 FEVLKQQKEIIEQGIDLFNKKPKRGIQYLQEQGMLGT--TPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKEVMYAYVDQ 89 (211)
T ss_dssp ---CCSHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCS--SHHHHHHHHHHCTTSCHHHHHHHHTCCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC--CHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 8999998899999999983299999999998699899--99999999984767549999998704662689999999985
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCH
Q ss_conf 999999947999998701668996269999999999999751999--879714699999999985201367022045898
Q 000513 627 FNFRGMNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYEQSSD--ILSDKDAALLLSYSLILLNTDQHNAQVKKKMTE 704 (1453)
Q Consensus 627 f~f~~~~~~~alR~~l~~frlPgE~q~i~ri~e~Fs~~y~~~n~~--~~~~~d~~~~l~~siimLntdlhn~~~k~~mt~ 704 (1453)
|||+|+++|+|||.||.+||||||+|+||||||+||++||+|||+ +|.|+|+||+|+||+||||||+|||++|+|||+
T Consensus 90 fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~~~f~s~D~~~iLaySiImLNTDlHn~~vk~kMt~ 169 (211)
T 3ltl_A 90 HDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTK 169 (211)
T ss_dssp SCCCSSCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHTCTTCCSCSSHHHHHHHHHHHHHHHHHHTCTTCCSCCCH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 59889979999999997371798426999999999999998588877747888999999999998564148645689899
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 8899851036799999998999999985305533477668
Q 000513 705 EDFIRNNRSINGGKDLPREYLAELYHSICENEILMIPEQG 744 (1453)
Q Consensus 705 ~~F~~n~~~~~~~~d~~~~~L~~iY~~I~~~~i~~~~e~~ 744 (1453)
++|++|+||+|+|+|||++||++||++|+++||+|+++..
T Consensus 170 ~~Fi~n~rg~n~g~d~p~e~L~~iYd~I~~~ei~l~~~~~ 209 (211)
T 3ltl_A 170 EQYIKMNRGINDSKDLPEEYLSAIYNEIAGKKISMKETKE 209 (211)
T ss_dssp HHHHHHTCSSCSSSSCCHHHHHHHHHHHHHSCCCCC----
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9999986543678999999999999999848762789988
No 2
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=1.00 E-value=1 Score=475.07 Aligned_cols=195 Identities=44% Similarity=0.731 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 99999999998987641589141599998389999999957898996412899978998631599724699999998519
Q 000513 548 RKMKYIKRKLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGDFLGNHDEFCVQVLHEFAGTF 627 (1453)
Q Consensus 548 ~~~k~~K~~~~~~~~~FN~~pk~Gi~~l~~~g~l~~~~~p~~ia~fl~~~~~l~k~~ige~l~~~~~~~~~vl~~f~~~f 627 (1453)
++.|++|+.+..|+.+||.+||+||+||+++|++++ +|++||+||+.+++|+|++||+|||++++||.+||++|++.|
T Consensus 7 ~~~~~~k~~~~~g~~~FN~~PkkGi~~L~~~~~l~~--~p~~iA~fL~~~~~l~k~~igeyLg~~~~~n~~vl~~y~~~f 84 (203)
T 1r8s_E 7 SKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQN--TPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLH 84 (203)
T ss_dssp ------CHHHHHHHHHHHHCHHHHHHHHHHTTSSCS--SHHHHHHHHHHCTTCCHHHHHHHHTCCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCC--CHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 348888899999999981299999999998799999--999999999877685899999998514437999999999964
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHH
Q ss_conf 99999947999998701668996269999999999999751999879714699999999985201367022045898889
Q 000513 628 NFRGMNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYEQSSDILSDKDAALLLSYSLILLNTDQHNAQVKKKMTEEDF 707 (1453)
Q Consensus 628 ~f~~~~~~~alR~~l~~frlPgE~q~i~ri~e~Fs~~y~~~n~~~~~~~d~~~~l~~siimLntdlhn~~~k~~mt~~~F 707 (1453)
||+|+++|+|||.||.+||||||+|+||||||+||++||+|||+.|.++|+||+|+||+||||||+|||++|+|||+++|
T Consensus 85 dF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~f~s~D~~~vLaySiImLNTDlHn~~vk~kMt~~~F 164 (203)
T 1r8s_E 85 EFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERF 164 (203)
T ss_dssp CCTTCCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 97899689999999972617871689999999999999984976567811679999899886510047422234679999
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9851036799999998999999985305533477668
Q 000513 708 IRNNRSINGGKDLPREYLAELYHSICENEILMIPEQG 744 (1453)
Q Consensus 708 ~~n~~~~~~~~d~~~~~L~~iY~~I~~~~i~~~~e~~ 744 (1453)
++|+||+|+|+|||++||+.||++|+.+||+++++++
T Consensus 165 i~n~rgin~g~d~p~e~L~~iYd~I~~~ei~~~~d~~ 201 (203)
T 1r8s_E 165 VAMNRGINEGGDLPEELLRNLYDSIRNEPFKIPEDDG 201 (203)
T ss_dssp HHHTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCCC--
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9986266578999999999999999848788965768
No 3
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=1.00 E-value=1 Score=473.41 Aligned_cols=195 Identities=37% Similarity=0.604 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC-CCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999999999998987641589141599998389999999957898996412-8999789986315997246999999985
Q 000513 547 VRKMKYIKRKLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYT-VGLDKNLIGDFLGNHDEFCVQVLHEFAG 625 (1453)
Q Consensus 547 l~~~k~~K~~~~~~~~~FN~~pk~Gi~~l~~~g~l~~~~~p~~ia~fl~~~-~~l~k~~ige~l~~~~~~~~~vl~~f~~ 625 (1453)
++++|.+|+.+.+|+.+||++||+||+||+++|+++++ +|++||+||+.+ ++|||++||||||+++ +.+||++|++
T Consensus 17 ~~~~r~~K~~~~~~~~~FN~~PkkGI~~L~~~g~l~~~-~~~~iA~fL~~~~~~L~k~~iGeyLg~~~--n~~vL~~yv~ 93 (230)
T 1ku1_A 17 RGSHMDRKTEFIECTNAFNEKPKKGIPMLIEKGFIASD-SDKDIAEFLFNNNNRMNKKTIGLLLCHPD--KVSLLNEYIR 93 (230)
T ss_dssp SSSCHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSSCS-SHHHHHHHHHHTTTTSCHHHHHHHHTCGG--GHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCC-CHHHHHHHHHHCCCCCCHHHHHHHHCCCC--HHHHHHHHHH
T ss_conf 99999999999999999954999999999988983899-98999999997276569999999980821--7999999985
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC---------------CCCCCHHHHHHHHHHHHHHH
Q ss_conf 199999994799999870166899626999999999999975199---------------98797146999999999852
Q 000513 626 TFNFRGMNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYEQSS---------------DILSDKDAALLLSYSLILLN 690 (1453)
Q Consensus 626 ~f~f~~~~~~~alR~~l~~frlPgE~q~i~ri~e~Fs~~y~~~n~---------------~~~~~~d~~~~l~~siimLn 690 (1453)
+|||+|+++|+|||.||.+||||||+|+||||||+||++||+||| .+|.++|+||+|+||+||||
T Consensus 94 ~fdF~g~~ld~ALR~fL~~f~LPGEaQ~IdRile~Fa~rY~~~N~~~p~~~~~~~~~~~~~~f~s~D~vyvLaySiImLN 173 (230)
T 1ku1_A 94 LFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAEDDISTVQPDADSVFILSYSIIMLN 173 (230)
T ss_dssp TSCCTTCCHHHHHHHHTTTCCCCSSHHHHHHHHHHHHHHHHHTSCCCGGGCCSCCTTCGGGCCCCHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 42679997999999999808588519999999999999999818777532101001122345577028999999999980
Q ss_pred HCCCCHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 013670220458988899851036799999998999999985305533477668
Q 000513 691 TDQHNAQVKKKMTEEDFIRNNRSINGGKDLPREYLAELYHSICENEILMIPEQG 744 (1453)
Q Consensus 691 tdlhn~~~k~~mt~~~F~~n~~~~~~~~d~~~~~L~~iY~~I~~~~i~~~~e~~ 744 (1453)
||+|||+||+|||+++|++|+||+|+|+|||++||++||++|+++||+|++|++
T Consensus 174 TDlHnp~vk~kMT~~~FikN~rg~n~g~d~p~e~L~~iY~~I~~~ei~~~ee~~ 227 (230)
T 1ku1_A 174 TDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIVMPEEHH 227 (230)
T ss_dssp HHHTCTTCSSCCCHHHHHHHTTTCBTTBCCCHHHHHHHHHHHHHSCCCCC----
T ss_pred HHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 130264346777799999986465677888899999999999848346886677
No 4
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Probab=1.00 E-value=1 Score=447.81 Aligned_cols=191 Identities=35% Similarity=0.562 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH-CCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 99999898764158914159999838999999995789899641-28999789986315997246999999985199999
Q 000513 553 IKRKLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRY-TVGLDKNLIGDFLGNHDEFCVQVLHEFAGTFNFRG 631 (1453)
Q Consensus 553 ~K~~~~~~~~~FN~~pk~Gi~~l~~~g~l~~~~~p~~ia~fl~~-~~~l~k~~ige~l~~~~~~~~~vl~~f~~~f~f~~ 631 (1453)
.|+...+|+.+||++||+||+||++.+......+|++||+||+. +++|||++||||||++++||.+||++|+++|||+|
T Consensus 7 ~~k~~~e~i~~FN~~PkkGI~~L~~~~~~~~~~~p~~IA~FL~~~~~~LdK~~IGeyLg~~~~~n~~VL~~yv~~fdF~g 86 (356)
T 1xsz_A 7 IEKAQREIIEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQVLKAFTSQMNFNG 86 (356)
T ss_dssp HHHTHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTTTSCHHHHHHHHTCCSHHHHHHHHHHHHTSCCTT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999815999999999986001589999999999984587889999999985784578999999999669799
Q ss_pred CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHH--CCCCHHHHHH
Q ss_conf 99479999987016689962699999999999997519998797146999999999852013670220--4589888998
Q 000513 632 MNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYEQSSDILSDKDAALLLSYSLILLNTDQHNAQVK--KKMTEEDFIR 709 (1453)
Q Consensus 632 ~~~~~alR~~l~~frlPgE~q~i~ri~e~Fs~~y~~~n~~~~~~~d~~~~l~~siimLntdlhn~~~k--~~mt~~~F~~ 709 (1453)
+++|+|||.||.+||||||+|+||||||+||++||+|||+.|.++|+||+|+||+||||||+|||++| +|||+++|++
T Consensus 87 ~~ld~ALR~fL~~frLPGEaQ~IDRile~FA~rY~~~Np~~f~s~D~~yvLaySiImLNTDLHNpnvk~k~kMT~~dFik 166 (356)
T 1xsz_A 87 QSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKR 166 (356)
T ss_dssp SCHHHHHHHHHHTSCBCSSHHHHHHHHHHHHHHHHHHCTTTSSSHHHHHHHHHHHHHHHHHHHCTTSCGGGSCCHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 98999999999828488508899999999999999739986687438999999999862100386555457898999999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 5103679999999899999998530553347766
Q 000513 710 NNRSINGGKDLPREYLAELYHSICENEILMIPEQ 743 (1453)
Q Consensus 710 n~~~~~~~~d~~~~~L~~iY~~I~~~~i~~~~e~ 743 (1453)
|+||+|+|+|||++||++||++|+.+||.+...+
T Consensus 167 N~rgin~g~d~p~e~L~~iYd~I~~~ei~l~~~~ 200 (356)
T 1xsz_A 167 NLRGGNNGGDFDAKFLEELYSEIKAKPFELNFVK 200 (356)
T ss_dssp HTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCBCS
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 8544468788989999999999970877557755
No 5
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=1.00 E-value=1 Score=443.62 Aligned_cols=192 Identities=43% Similarity=0.728 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 99999998987641589141599998389999999957898996412899978998631599724699999998519999
Q 000513 551 KYIKRKLMVGADHFNRDPKKGLEFLQGMHLLPDKLDPQSVALFFRYTVGLDKNLIGDFLGNHDEFCVQVLHEFAGTFNFR 630 (1453)
Q Consensus 551 k~~K~~~~~~~~~FN~~pk~Gi~~l~~~g~l~~~~~p~~ia~fl~~~~~l~k~~ige~l~~~~~~~~~vl~~f~~~f~f~ 630 (1453)
|.+|+.+.+|+.+||.+||+||+||+++|++++ +|++||+||+.+++|||++||||||++++||.+||++|++.|||+
T Consensus 12 ~~~~~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~--~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vl~~~~~~~~f~ 89 (347)
T 2r09_A 12 TQRNAQIAMGRKKFNMDPKKGIQFLIENDLLQS--SPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKVLQAFVELHEFA 89 (347)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCC--SHHHHHHHHHHCTTCCHHHHHHHHHCCSHHHHHHHHHHHHTSCCT
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCC--CHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
T ss_conf 889999999999982399999999998799999--999999999857275789999986589706899999999953868
Q ss_pred CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHH
Q ss_conf 99947999998701668996269999999999999751999879714699999999985201367022045898889985
Q 000513 631 GMNLDTALRLFLGTFRLPGESQKIQRVLEAFAERYYEQSSDILSDKDAALLLSYSLILLNTDQHNAQVKKKMTEEDFIRN 710 (1453)
Q Consensus 631 ~~~~~~alR~~l~~frlPgE~q~i~ri~e~Fs~~y~~~n~~~~~~~d~~~~l~~siimLntdlhn~~~k~~mt~~~F~~n 710 (1453)
|++||+|||.||.+||||||+|+||||||+||++||+|||++|.++|++|+|+||+||||||+|||++|+|||+++|++|
T Consensus 90 ~~~~~~alR~~l~~f~lpgE~q~idril~~Fa~~y~~~np~~~~~~d~~~~l~~siimLntdlhn~~~k~kmt~~~fi~n 169 (347)
T 2r09_A 90 DLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNHNVRDKPTAERFITM 169 (347)
T ss_dssp TCCHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 99799999999972868972678999999999999985986567854899999999997056405301245879999987
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 1036799999998999999985305533477668
Q 000513 711 NRSINGGKDLPREYLAELYHSICENEILMIPEQG 744 (1453)
Q Consensus 711 ~~~~~~~~d~~~~~L~~iY~~I~~~~i~~~~e~~ 744 (1453)
+||+|+|+|||+++|+.+|++|+.+|+.++++++
T Consensus 170 ~~~~~~~~~~p~e~L~~iY~~I~~~ei~~~~e~~ 203 (347)
T 2r09_A 170 NRGINEGGDLPEELLRNLYESIKNEPFKIPEDDG 203 (347)
T ss_dssp TTTTBTTBCCCHHHHHHHHHHHHHSCCCCTTCCS
T ss_pred HHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 5112677778999999997743137654554455
No 6
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=1.00 E-value=1 Score=23.95 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHH
Q ss_conf 69999999995015479545999999999998422450210999999998757778850035542014567753234567
Q 000513 1155 AGFEALAFIMSEAAHLLPSNFILCVDAARQFAESRVGEVDRSVSALELMAGSVVSLVRWSSEAKNAVGEEAAIKLSQDIG 1234 (1453)
Q Consensus 1155 ~aFe~L~lIi~d~~~L~~~n~~~~I~~L~~F~~q~~~~~~~S~~Ai~LL~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 1234 (1453)
..|++.+.|+. ..+.+..-+..++..+..|..... .|+-+.|++.+...+.. .+....
T Consensus 266 VvyEa~k~I~~-l~~~~~~~~~~a~~~L~~fLss~d--~niryvaLr~L~~l~~~-------~P~~v~------------ 323 (355)
T 3tjz_B 266 VVYEAASAIVN-LPGCSAKELAPAVSVLQLFCSSPK--AALRYAAVRTLNKVAMK-------HPSAVT------------ 323 (355)
T ss_dssp HHHHHHHHHTC------------CCCTHHHHHHSSS--SSSHHHHHHCC-------------------------------
T ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHH-------CCHHHH------------
T ss_conf 99999999993-658889999999999999976999--14899999999999987-------949999------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 65999999998531278499999999999999
Q 000513 1235 EMWLRLVQGLKKVCLDQREEVRNHAVLALQRS 1266 (1453)
Q Consensus 1235 ~lWl~LL~~La~lc~D~R~EVR~~AiqtL~r~ 1266 (1453)
..-..+-.+..|+.+-|+..||+||..+
T Consensus 324 ----~~n~~ie~li~d~n~sI~t~Aittllkt 351 (355)
T 3tjz_B 324 ----ACNLDLENLVTDANRSIATLAITTLLKT 351 (355)
T ss_dssp --------------------------------
T ss_pred ----HHHHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf ----9999999870698676999999986313
No 7
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=1.00 E-value=1 Score=22.07 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=14.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999853127849999999999999984
Q 000513 1240 LVQGLKKVCLDQREEVRNHAVLALQRSLA 1268 (1453)
Q Consensus 1240 LL~~La~lc~D~R~EVR~~AiqtL~r~L~ 1268 (1453)
++..+.....|+.+.||..|+.+|-+...
T Consensus 409 ~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 409 AMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999669978999999999999998
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=21.71 Aligned_cols=100 Identities=18% Similarity=0.200 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 73578899999999971798778844889998999999999930577567999999999999999999999999999999
Q 000513 339 EDVPLFALSLINSAIELGGSSIGKYPRLLVLIQDELFRYLMQFGLSMSPLILSTVCSIVLNLYHHLRVELKAQLEAFFSC 418 (1453)
Q Consensus 339 ~~~~~~~L~Li~~~le~~g~~~~~~p~l~~li~d~lc~~Ll~~~~s~~~~i~~~~lri~~~L~~~~r~~Lk~qlE~fl~~ 418 (1453)
..+|.-+++.+...+... +.-..-.-+.+.+.|++....++..+-..+++++..+...+...++..++-++..
T Consensus 188 ~~vR~~A~~aL~~~~~~~-------~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~ 260 (852)
T 4fdd_A 188 PKIRSHAVACVNQFIISR-------TQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEY 260 (852)
T ss_dssp HHHHHHHHHHHHTTTTTT-------CHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 899999999999998646-------3879988999999999871799778999999999999985779899889999999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCH
Q ss_conf 9998504999998888999999999995080
Q 000513 419 VLLRLAQSKHGSSYQQQEVAMEALVDLCRQQ 449 (1453)
Q Consensus 419 l~~~l~~~~~~~~~~~r~l~LE~l~~l~~~p 449 (1453)
++..+.+ . ...-|..++|.+..++..+
T Consensus 261 l~~~~~~-~---~~~vr~~a~e~l~~l~~~~ 287 (852)
T 4fdd_A 261 MLQRTQD-Q---DENVALEACEFWLTLAEQP 287 (852)
T ss_dssp HHHHHTC-S---SHHHHHHHHHHHHHHTTST
T ss_pred HHHHCCC-C---CHHHHHHHHHHHHHHHCCH
T ss_conf 9987069-9---6899999999999986036
No 9
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=21.37 Aligned_cols=117 Identities=12% Similarity=0.074 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 67659999999985312784999999999999998431199999578999999975765799899863079862231567
Q 000513 1233 IGEMWLRLVQGLKKVCLDQREEVRNHAVLALQRSLAAVDGIRLPNALWFQCFDMVIFTLLDDLLEIAQASSPKDYRNIDG 1312 (1453)
Q Consensus 1233 ~~~lWl~LL~~La~lc~D~R~EVR~~AiqtL~r~L~~~~g~~l~~~~W~~if~~VLFPLL~~L~~~~~~~s~~d~~~~~E 1312 (1453)
+..++-.++..|.....|+...||..|..+|..++. .. + +..+ +|.+-..+ .+ +.| .
T Consensus 92 ~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~-~~----~-------~~~l-l~~l~~~l--------~~-~~~-~ 148 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA-ST----S-------LEAQ-QESIVESL--------SN-KNP-S 148 (242)
T ss_dssp GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHT-TS----C-------HHHH-HHHHHHHT--------TC-SCH-H
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-CC----C-------HHHH-HHHHHHHH--------CC-CCH-H
T ss_conf 798999999999999768988999999999999997-28----9-------9999-99999988--------48-983-9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999788520882069999999999999998441288843585379999999999653
Q 000513 1313 TLVLAMKLMSKAFLQQLQDLSQQPSFCKLWLGVLDHMDKYMKLKLRGKRSDKIHELIPELLKNNLLVMK 1381 (1453)
Q Consensus 1313 T~~lal~lLskvFl~~l~~L~~l~~F~~lW~~iLd~l~~~~~~~~~~~~s~~l~Eav~esLKNlLlVm~ 1381 (1453)
.+..++..+..++..+-.. ..+...+..++..+..++. +...++.+++.+++..+..++-
T Consensus 149 vr~~~l~~l~~~l~~~~~~----~~~~~~l~~l~p~l~~~l~-----D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 149 VKSETALFIARALTRTQPT----ALNKKLLKLLTTSLVKTLN-----EPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHHHHHHHTTCCGG----GCCHHHHHHHHHHHHHHHT-----SSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCCC----CCCHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999871887----7668999999999998846-----9985899999999999999849
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=20.46 Aligned_cols=98 Identities=14% Similarity=0.091 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Q ss_conf 3578899999999971798778844889998999999999930577--567999999999999999999999999--999
Q 000513 340 DVPLFALSLINSAIELGGSSIGKYPRLLVLIQDELFRYLMQFGLSM--SPLILSTVCSIVLNLYHHLRVELKAQL--EAF 415 (1453)
Q Consensus 340 ~~~~~~L~Li~~~le~~g~~~~~~p~l~~li~d~lc~~Ll~~~~s~--~~~i~~~~lri~~~L~~~~r~~Lk~ql--E~f 415 (1453)
..|..+|..+..+.+..+ +..+.-.-..+.+.+++.+..+ +..+-..+++++..++..+..++..+. ..+
T Consensus 145 ~~r~~al~~l~~l~~~~~------~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~i 218 (876)
T 1qgr_A 145 HMKESTLEAIGYICQDID------PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFI 218 (876)
T ss_dssp HHHHHHHHHHHHHHHHSC------HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999987458------76678679999999998616799988999999999999999999988717899999
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99999985049999988889999999999950
Q 000513 416 FSCVLLRLAQSKHGSSYQQQEVAMEALVDLCR 447 (1453)
Q Consensus 416 l~~l~~~l~~~~~~~~~~~r~l~LE~l~~l~~ 447 (1453)
+..+.. .+.+ ...+.|..++++|..++.
T Consensus 219 l~~l~~-~~~~---~~~~vr~~a~~~l~~l~~ 246 (876)
T 1qgr_A 219 MQVVCE-ATQC---PDTRVRVAALQNLVKIMS 246 (876)
T ss_dssp HHHHHH-HTTC---SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HCCC---CCHHHHHHHHHHHHHHHH
T ss_conf 999998-7179---988999999999999999
Done!