Your job contains 1 sequence.
>000514
MDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKT
QKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFI
LFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGI
PNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSV
RDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRL
DKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRD
MMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLA
TSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISE
AVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHIL
RTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISS
CQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSY
TMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLA
LQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLE
IVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSL
KREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTL
RYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQH
RQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHS
LQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLY
CMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIEN
DAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSES
FPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQ
SGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLI
QTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLS
CLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWA
AQDNTSTAIV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000514
(1450 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2028040 - symbol:AT1G23230 "AT1G23230" species... 5250 0. 1
DICTYBASE|DDB_G0270434 - symbol:med23 "putative mediator ... 214 3.7e-13 5
FB|FBgn0034795 - symbol:MED23 "Mediator complex subunit 2... 203 4.8e-10 2
ZFIN|ZDB-GENE-040724-82 - symbol:med23 "mediator complex ... 147 0.00012 2
UNIPROTKB|Q9ULK4 - symbol:MED23 "Mediator of RNA polymera... 143 0.00031 2
UNIPROTKB|F1N8H3 - symbol:MED23 "Uncharacterized protein"... 156 0.00033 3
>TAIR|locus:2028040 [details] [associations]
symbol:AT1G23230 "AT1G23230" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0006487 "protein N-linked
glycosylation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0045492 "xylan biosynthetic process"
evidence=RCA] EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006355
GO:GO:0006351 EMBL:AC005292 GO:GO:0016592 EMBL:AC002311
IPI:IPI00522318 IPI:IPI00542820 IPI:IPI00992463 PIR:F86366
RefSeq:NP_001185071.1 RefSeq:NP_173737.1 UniGene:At.41562
PRIDE:F4I4P3 EnsemblPlants:AT1G23230.1 GeneID:838932
KEGG:ath:AT1G23230 TAIR:At1g23230 eggNOG:NOG305557
InParanoid:Q9LR38 KO:K15166 OMA:DILAYFY ArrayExpress:F4I4P3
InterPro:IPR021629 Pfam:PF11573 Uniprot:F4I4P3
Length = 1615
Score = 5250 (1853.2 bits), Expect = 0., P = 0.
Identities = 1031/1473 (69%), Positives = 1179/1473 (80%)
Query: 4 NQSQRXXXXXXXXXXXXXXXYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKTQKR 63
+QSQR YQFHPARAAIIDLFNLYLGR SRQK D+S+RDPPNK+QKR
Sbjct: 2 DQSQRTVAATPSSSRS----YQFHPARAAIIDLFNLYLGRGSRQKPDESLRDPPNKSQKR 57
Query: 64 VLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFA 123
V A NR+LPPRNEQFL+DFE LQSQF D +QLR++TESVLIS+VVQC +H PRAEF+LFA
Sbjct: 58 VHAPNRDLPPRNEQFLLDFELLQSQFNDPEQLRTITESVLISLVVQCSNHAPRAEFLLFA 117
Query: 124 LRSLCSIGYINWDTFXXXXXXXXXXAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNS 183
LR+LC I YINWDTF AE S QG QA A + +S S S +P
Sbjct: 118 LRTLCRISYINWDTFLPSLLSSVSAAEASLSQGVQAAAATAGSSATSS-----QSVVP-- 170
Query: 184 SNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSVRDN 243
S NP S LPS HGIGSP+ S ++ SV ++ + ++ R + +R
Sbjct: 171 ---VSVNPTSLLPSAHGIGSPSASEVK-SVENGQQIARAGQIV---RENAMRNSQRIRAA 223
Query: 244 AISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKA 303
A++SLRQL CKIIL G+E SLKPVTHA+IF +M+NWLV WD++ G ++S GKSWR +K
Sbjct: 224 AVNSLRQLSCKIILIGVESSLKPVTHAEIFQYMMNWLVNWDRRDLGTEDSVGKSWRSEKT 283
Query: 304 LIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMA 363
L EWL SCLDVIWLLV+E R+PFYELLR+GLQFIENIPDDEALFTLI+EIHRRRD MA
Sbjct: 284 LAEWLRSCLDVIWLLVEEGESRIPFYELLRSGLQFIENIPDDEALFTLIMEIHRRRDAMA 343
Query: 364 MHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSI 423
MHM MLDQHLHCP+FGTHRI+SQ T N+ EA +LR+SPITYPSVLGEPL+GEDLA SI
Sbjct: 344 MHMLMLDQHLHCPSFGTHRIVSQITANVPPEAVPHLRHSPITYPSVLGEPLYGEDLAMSI 403
Query: 424 QRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQ-GPTPGAVFTYDMISEAV 482
+GSLDWERA+RCIRHAIR TPSPDWWKRVL+VAPCYR Q GP PGAVFT DMI EA+
Sbjct: 404 PKGSLDWERAVRCIRHAIRTTPSPDWWKRVLVVAPCYRPSTQAGPIPGAVFTSDMICEAI 463
Query: 483 IDRIVELLKLTNS-------------------EVNCWHDWLIFSDVFFFLVKSGCIDFVD 523
IDRIVELLKLTNS + NCW +WL+FSD+FFFL+KSGC DFVD
Sbjct: 464 IDRIVELLKLTNSGNDCFGIDLVSVTFPPLYADANCWQEWLVFSDIFFFLIKSGCTDFVD 523
Query: 524 FVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDR 583
F+DKLV RL DNHILRTNHVTWLLAQIIRVELVM ALNSD++KVETTRKILSFHREDR
Sbjct: 524 FIDKLVLRLNGVDNHILRTNHVTWLLAQIIRVELVMTALNSDAKKVETTRKILSFHREDR 583
Query: 584 CTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGXXXXX 643
+DPNNPQS+LLDF+SSCQNLRIWSL+T+TR YLNNEQL KGKQIDEWWR SKG
Sbjct: 584 NSDPNNPQSVLLDFVSSCQNLRIWSLSTTTRAYLNNEQLLKGKQIDEWWR--SKGERMMD 641
Query: 644 XXXXXXXSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPL 703
S+GMFWVVSYTMAQPACETV+NWLSSAG+ EL PG L PN+R+M+ +EV PL
Sbjct: 642 YMNMDDRSIGMFWVVSYTMAQPACETVINWLSSAGMAEL-PG--LQPNDRVMMTQEVTPL 698
Query: 704 PMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQ 763
PMSLL+GFS+NLCLKLALQME+++F QVV SIAMVETYTRL+L++PHS+FRS FS LAQ
Sbjct: 699 PMSLLSGFSMNLCLKLALQMEEALFVSQVVPSIAMVETYTRLLLISPHSMFRSHFSQLAQ 758
Query: 764 RNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLA 823
RN SLL+K GVT LVLEI+NYRLLPLYRYQGK+KTLMYD+TKIISALK KRGDHR+ RLA
Sbjct: 759 RNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSKTLMYDVTKIISALKGKRGDHRIFRLA 818
Query: 824 ENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTM 883
ENLCMNLILS RDFFS+KREGKG TEFTETLNRIT++ LAI IKTRGIAD DH++YLQTM
Sbjct: 819 ENLCMNLILSLRDFFSVKREGKGPTEFTETLNRITIMTLAITIKTRGIADPDHMVYLQTM 878
Query: 884 LEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPS 943
LEQI+ATSQHTWSEKT+R+FPSLLR+ L GR+DKRGL+IQAWQQAETTVINQCTQLLSPS
Sbjct: 879 LEQILATSQHTWSEKTMRHFPSLLRETLKGRVDKRGLSIQAWQQAETTVINQCTQLLSPS 938
Query: 944 ADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTM 1003
A+P YV TYLSHSFPQHRQYLCAGA +LMQGH ENINS NL RVLRE SPEEVT+NIYT+
Sbjct: 939 AEPAYVSTYLSHSFPQHRQYLCAGACLLMQGHAENINSTNLARVLREVSPEEVTANIYTL 998
Query: 1004 VDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHEXXXXXXXXXXXXXXXXXXHALRI 1063
VDVLLHH+HV+LQ+G SL+ +L KA AN++FF THE HAL I
Sbjct: 999 VDVLLHHVHVDLQQGQSLEAVLDKAGANLAFFFWTHEMLPLDIFLLALIDRDDDPHALII 1058
Query: 1064 VITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIA 1123
++LL +L R+K YC NRG PEHWL + +FKR ELQKALGNHLSWK+RYPTFFDDIA
Sbjct: 1059 AMSLLKTPDLLLRIKNYCQNRGSPEHWLVTQVFKRNELQKALGNHLSWKDRYPTFFDDIA 1118
Query: 1124 ARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLI 1183
ARLLPVIPL++YRLIEN+AM+ AD +L +S FLAY+PLRF+FVRDILAYFYGHLPGKL+
Sbjct: 1119 ARLLPVIPLVLYRLIENNAMEQADNLLLAHSHFLAYHPLRFTFVRDILAYFYGHLPGKLV 1178
Query: 1184 VRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPAL----NYNSK 1239
+R+L V DLSKIPFSESFPQ+IS + +CPPLDYFA+LLL LVNNVIP L N +S+
Sbjct: 1179 LRMLKVLDLSKIPFSESFPQYISPTGAPVCPPLDYFASLLLNLVNNVIPPLSSSSNCSSR 1238
Query: 1240 SGSTMD---ASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILS 1296
SGS D +S R PH K+P TSQ GP+N SEG+K FYQ QDPGTYTQLVLETAVIEILS
Sbjct: 1239 SGSMADILNSSARPPHGKTPGTSQPGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILS 1298
Query: 1297 LPXXXXXXXXXXXXXXXXXXPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRS 1356
LP TLIQ+ NG +GA+N VGQGSVLPTSPSGGSTDS+ ASRS
Sbjct: 1299 LPVSAAQIVSSLVQIIVNIQSTLIQSGNGFHGAANGVGQGSVLPTSPSGGSTDSMSASRS 1358
Query: 1357 TPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWL 1416
T + GINT+SFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFH+QLY+EA+R+ +E+WWL
Sbjct: 1359 TCLIPGINTASFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHVQLYLEAARVTRETWWL 1418
Query: 1417 ADGKRSLGELDSAVGYALLDPTWAAQDNTSTAI 1449
DGKRS GELDSAVGYAL+DPTWAAQDNTSTAI
Sbjct: 1419 KDGKRSQGELDSAVGYALMDPTWAAQDNTSTAI 1451
>DICTYBASE|DDB_G0270434 [details] [associations]
symbol:med23 "putative mediator complex subunit 23"
species:44689 "Dictyostelium discoideum" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0005667
"transcription factor complex" evidence=ISS] [GO:0030587 "sorocarp
development" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
dictyBase:DDB_G0270434 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0006355 GO:GO:0006351 GO:GO:0030587 GO:GO:0005667
InterPro:IPR021629 Pfam:PF11573 RefSeq:XP_646801.1
EnsemblProtists:DDB0266935 GeneID:8617774 KEGG:ddi:DDB_G0270434
eggNOG:KOG1883 OMA:LYCPLER Uniprot:Q55BN0
Length = 1662
Score = 214 (80.4 bits), Expect = 3.7e-13, Sum P(5) = 3.7e-13
Identities = 107/458 (23%), Positives = 202/458 (44%)
Query: 477 MISEAVIDRIVELL-KLTNS------EVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLV 529
+I+EA I + ++LL K N E N W +WL+FS+ F+FL ++G +D F+ L
Sbjct: 455 IITEATISKTMQLLNKYPNQIIENQIENNSWKEWLLFSEQFYFLCENGLVDLEQFIVTLS 514
Query: 530 S-RLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRK------ILSFHRED 582
R+ +GD ++ N V L+++ I ++ V + V + +LSF D
Sbjct: 515 EKRMNNGDP--IKDNMVVLLISKTIIIQDVKTLFKQHLQNVNSNHYGHLIPLVLSFVNND 572
Query: 583 RCTDPNNPQSILLDFISSCQNLRIWS--LNTSTREYLNNEQLQKG--KQIDEWWRQVSKG 638
P Q+I L F N + + ++ L+N Q +Q WW S+
Sbjct: 573 S-NYPIISQNISLYFFLMRINTNTENPEIIAHIKKLLDNFNFQFTLFQQYRNWWE--SEK 629
Query: 639 XXXXXXXXXXXXSVGMFWVVSYTMAQPACETVMNWLSSAGVTEL-FPGSNLPPNERLMVM 697
+ F ++ + ++ + S+ + FPG +V
Sbjct: 630 VKQKPEFFTTIQDITYFSIICNVIPTEGEMELIRFQSNGSDQSIQFPGVG---GIGTVVT 686
Query: 698 REVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSL 757
++ P+ +L SL KL + + +V S +E Y R + P + L
Sbjct: 687 GKIKPVSNLILLNLSLRCRRKLIQESVLLLLDKEVPISPGFLEDYCRTVHYTPGPVSPFL 746
Query: 758 FSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLM---YDIT--KIISALKV 812
FS+ + + LA + V+E V++RLL + + + L+ DI K I +++
Sbjct: 747 FSYFKKFHR--LAPIHA---VIESVSHRLLKVLKSNKELAVLLRALQDIQTQKPIQNIQL 801
Query: 813 KRG-DHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGI 871
R D+ +L+ + +L ++LI ++ + SL G F NR + ++A +IK +GI
Sbjct: 802 SRSIDYLLLKASISLPVDLISAKEIWKSLDL---GL--FN---NRRLITSIARLIKLKGI 853
Query: 872 ADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRD 909
D + + + +E ++ + +S+ TL +FP +L++
Sbjct: 854 QDFNRISDVPVFIENCFKSNPYCFSKSTLEFFPDILKN 891
Score = 83 (34.3 bits), Expect = 3.7e-13, Sum P(5) = 3.7e-13
Identities = 25/101 (24%), Positives = 51/101 (50%)
Query: 1116 PTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYP-LRFSFVRDILAYF 1174
P ++ + +RL+P++ +I+ + IE + D ++ + ++ YY + + ++D L Y+
Sbjct: 1151 PIYYSNSISRLMPIVEIIISKSIELNNGDLFEKTINHFNIPYHYYQDEKETTIKDTLIYY 1210
Query: 1175 YGHLPGKL-------IVRILNVFDLSKIPFSESFPQHISSS 1208
Y KL +++LN D+ FS F Q + SS
Sbjct: 1211 YDSQLFKLNPELKLLFLKLLNQSDIDN-RFSNIFNQFLKSS 1250
Score = 61 (26.5 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
Identities = 30/143 (20%), Positives = 58/143 (40%)
Query: 1118 FFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYF--- 1174
++D +L P + L+ +L+ +D+ R ++ FL + + AYF
Sbjct: 1210 YYDSQLFKLNPELKLLFLKLLNQSDIDN--RFSNIFNQFLKSSRIEDITMVGSTAYFNDL 1267
Query: 1175 YGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLL------GLVN 1228
L + + NVFD +F I SNP+ + +LL + N
Sbjct: 1268 ISPLAEMMDLTNQNVFDTFSFKTENTFSS-IDISNPLELKLNNIILEILLLPLDSNWIAN 1326
Query: 1229 NVIPALNYNSKSGSTMDASLRAP 1251
++ LNY++++ + D + P
Sbjct: 1327 GLVSLLNYSNRNKNFSDRKIDPP 1349
Score = 45 (20.9 bits), Expect = 3.7e-13, Sum P(5) = 3.7e-13
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 158 QAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETS 212
Q + VS T+ S +++ P +SN SS+ S G S + + T+
Sbjct: 198 QHIKMVSTTTTPTSTPTTSTTNTPQNSNTSSSSSTGTSSSTIGSSSSSTTTSTTN 252
Score = 37 (18.1 bits), Expect = 3.7e-13, Sum P(5) = 3.7e-13
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 1257 MTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLP 1298
+T+Q+ S + + + D +L L ++EIL LP
Sbjct: 1277 LTNQNVFDTFSFKTENTFSSIDISNPLELKLNNIILEILLLP 1318
Score = 37 (18.1 bits), Expect = 3.7e-13, Sum P(5) = 3.7e-13
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 47 QKQDDSIRDPPNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTES 101
QKQ + + Q++ ++ + +Q +QLQ Q P Q + +S
Sbjct: 55 QKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLQQQRPQTPQQNAQQQS 109
Score = 37 (18.1 bits), Expect = 2.5e-09, Sum P(4) = 2.5e-09
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 984 LLRVLREFSP 993
LLR+++EF P
Sbjct: 1643 LLRIVKEFKP 1652
>FB|FBgn0034795 [details] [associations]
symbol:MED23 "Mediator complex subunit 23" species:7227
"Drosophila melanogaster" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0016592 "mediator complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=ISS] EMBL:AE013599 GO:GO:0006367
GO:GO:0016592 GO:GO:0001104 eggNOG:NOG305557 KO:K15166
InterPro:IPR021629 Pfam:PF11573 GeneTree:ENSGT00390000010380
EMBL:BT029934 RefSeq:NP_611735.1 UniGene:Dm.2311 STRING:Q9W1X7
PaxDb:Q9W1X7 PRIDE:Q9W1X7 EnsemblMetazoa:FBtr0071903 GeneID:37639
KEGG:dme:Dmel_CG3695 CTD:9439 FlyBase:FBgn0034795 InParanoid:Q9W1X7
OrthoDB:EOG41JWSZ PhylomeDB:Q9W1X7 GenomeRNAi:37639 NextBio:804687
Uniprot:Q9W1X7
Length = 1439
Score = 203 (76.5 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 118/558 (21%), Positives = 233/558 (41%)
Query: 706 SLLTGFSLNLCLKLALQM-EDSIFGGQVVASIAMVETYTRLMLLAP-HSLFRSLFSHLAQ 763
SL ++L QM + + GQV A+ A++ETY RL++ SL + L+Q
Sbjct: 534 SLTVHSKMSLIHSFVTQMLKQAQSKGQVPAA-ALLETYARLLVYTEIESL--GIKGFLSQ 590
Query: 764 RNPSLLAKVGVTPL--VLEIVNYRL--LPLYRYQGKTKTLMYDITKIISALKVKRG---D 816
P++ L ++E+ +YRL +P + Y+ + +L++ ++ + K++ +
Sbjct: 591 LMPTVFKNHAWAMLHTLMEMFSYRLHHVPTH-YRVQLLSLLHSLSSVPQTNKMQLNLCFE 649
Query: 817 HRVLRLAENLCMNLILSQRD-FFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADAD 875
LRL ++ Q +F+ K G ++ +E LNR+ ++ LA + G D +
Sbjct: 650 STALRLITSIGSAEFQPQFSRYFNDKSPGAVASNESEELNRVLILTLARSMHVHGGGD-E 708
Query: 876 HVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQ 935
+ + L I+ + H+W +L FP L + + + QQ + V +
Sbjct: 709 MQGWCKDFLSNIIQHTPHSWPMHSLACFPPALNEYFT----QNNQPPENKQQLKKAVEEE 764
Query: 936 CTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEE 995
S + + + +L + + +LC I+ + ENI+ ++L S
Sbjct: 765 YRTWTSMTNENDIIAHFLRPT--TNPLFLCLLFKIIWE--TENISPV-AYKILEGISARA 819
Query: 996 VTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANIS-----FFVLTHEXXXXXXXXXX 1050
+++++ D L+ E+ +D + K I+ F V+T +
Sbjct: 820 LSTHLRKFCDYLV----AEVASSSDGRDFIHKCVDTINNMIWKFNVVTIDRVVLCLALRT 875
Query: 1051 XXXXXXXXHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLF-KRVELQKALGNHL 1109
L I + LL EL+ RV+ +C + P +HW S K + +
Sbjct: 876 HEGNEAQVCFLIIQLLLLKASELRNRVQEFCKDNNP-DHWKQSNWQDKHLSFHQKYPEKF 934
Query: 1110 SWKER-----YPTFFDDIAARLLPVIPLIVYRLIE---NDAMDSADRVLATYSSFLAYYP 1161
+ E P +F ++ R LPV+ ++V+R IE + +L S ++
Sbjct: 935 ALDESASQIPLPVYFSNVCLRFLPVLDVVVHRFIELTITNVHQILGFILDHLSILYKFHD 994
Query: 1162 LRFSFVRDILAYFYGHL---PG---KLIVRILNVFDLSKIP---FSESFPQHISSSNPVM 1212
+++ + L Y+ L P KL+ I + F + P SE + ++ S + +
Sbjct: 995 RPITYLYNTLHYYERILRDRPALKKKLVGAITSAFSEIRPPNWSVSEPYKVYLQSQDSLW 1054
Query: 1213 CPPLDYFATLLLGLVNNV 1230
P L Y+ +L+ L + +
Sbjct: 1055 TPELSYYMSLIRRLADTI 1072
Score = 39 (18.8 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 21/97 (21%), Positives = 41/97 (42%)
Query: 242 DNAISSLRQLCCKIILTG-LEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDE-----SDG 295
D + + R LC K+++ L+F + + F + +V D K G+ E D
Sbjct: 87 DAHVITARMLCDKVLMCEKLDFEHRTFW-IESFRLIKRVIVQVDYK--GVREIMKVCRDK 143
Query: 296 KSW---RLDKALIEWLHSCLDVIWLLVDEDRCRVPFY 329
W ++ + L + D++ + D + C +P Y
Sbjct: 144 AQWFPLNVNVTYMPQLLAVEDILRFIFDRNNCLLPAY 180
>ZFIN|ZDB-GENE-040724-82 [details] [associations]
symbol:med23 "mediator complex subunit 23"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] ZFIN:ZDB-GENE-040724-82 InterPro:IPR021629
Pfam:PF11573 GeneTree:ENSGT00390000010380 HOVERGEN:HBG051122
HOGENOM:HOG000043810 EMBL:BX072559 IPI:IPI00864380 UniGene:Dr.34224
Ensembl:ENSDART00000141595 Uniprot:B8A4G4
Length = 1387
Score = 147 (56.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 143/717 (19%), Positives = 269/717 (37%)
Query: 503 WLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGAL 562
W S F V F V L +L G I +H+ W+L Q I + AL
Sbjct: 342 WQHLSSQLIFFVLFQFASFPHMVLSLHQKLA-GRGLIKGRDHLMWVLLQFISGSIQKNAL 400
Query: 563 NSDSRKVETTRKILSFHREDRCT---DPNNPQSILLDFISSCQNLRIWSLNTSTREYLNN 619
D V +L + E C D N PQS F +C IW ++ + + +N
Sbjct: 401 G-DFLPVMKLFDLL--YPEKECIPVPDINKPQSTHA-FAMTC----IW-IHLNRKAQNDN 451
Query: 620 EQLQ-----KGKQIDEWWRQVSKGXXXXXXXXXXXXSVGMFWVVSYTMAQPACETVMNWL 674
+LQ K E+ +Q + + S P V
Sbjct: 452 SKLQIPIPHSLKLHHEFLQQSLRNKSLPMTDYKIALLCNAYSTNSECFTLPMGVLVETIY 511
Query: 675 SSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVA 734
+ + PG+N + + + +N L SL ++L +A ++ +A
Sbjct: 512 GNGSMRITLPGTNCMASGSVTPL-PMNLLD-SLTVHAKMSLIHSIATRVIKLAHAKSSLA 569
Query: 735 -SIAMVETYTRLML-LAPHSLFRSLFSHLAQRNPSLLAKV--GVTPLVLEIVNYRLLPLY 790
+ A+VETY+RL++ + SL + ++Q P++ G+ +LE+ +YR+ +
Sbjct: 570 LAPALVETYSRLLVYMEIESL--GIKGFISQLLPNVFKSHAWGILHTLLEMFSYRM---H 624
Query: 791 RYQGKTKTLMYDITKIISALKVKRGDHRVLRLA-ENLCMNLILS------QRDFFSLKRE 843
Q + + ++ + S V + + L L E+ + LI + Q F +
Sbjct: 625 HIQPHYRVQL--LSHLHSLAAVPQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFLND 682
Query: 844 GKG--STEFTETLNRITVIALAIIIK-TRGIADADHV--LYLQTMLEQIMATSQHTWSEK 898
K S E +E LNR ++ LA T +D + + + +L+ IM + H W+
Sbjct: 683 PKTVLSAE-SEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMNFTPHNWASH 741
Query: 899 TLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFP 958
TL FP+ L+ + + ++ + V + + S + + + + P
Sbjct: 742 TLSCFPAPLQ----AFFKQNNVPQESRFNLKKNVEEEYRKWKSMTNENDIITHFSMQGSP 797
Query: 959 QHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRG 1018
+LC W ++ ++IN RVL + +++ T D L++ G
Sbjct: 798 P--LFLCL-LWKMLL-ETDHINQIGF-RVLERIGARALVAHVRTFADFLVYEFSTSAG-G 851
Query: 1019 HSLQDLLFKACANI-SFFVLTHEXXXXXXXXXXXXXXXXXXHALRIVITLLDRQELQQRV 1077
L + + + ++T + I + LL + + RV
Sbjct: 852 QQLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRV 911
Query: 1078 KLYCMNRGPPEHWLYSGLF-KRVELQKALGNHLSWK-------------ERY-PTFFDDI 1122
+ + PEHWL S K + K L ++ +Y P +F ++
Sbjct: 912 SDF-VKENAPEHWLQSDWHTKHMTYHKKYPEKLYFEGLAEQVNPPIQLQSQYLPIYFGNV 970
Query: 1123 AARLLPVIPLIVYRLIEN-DAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHL 1178
R LPV ++++R +E S + +L ++ +++ + L Y+ HL
Sbjct: 971 CLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYERHL 1027
Score = 43 (20.2 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 300 LDKALIEWLHSCLDVIWLLVDEDRCRVPFY 329
+ A+++ L + +V+ ++D + C +P Y
Sbjct: 163 VSSAVVQQLLAAREVVEYILDRNACLLPAY 192
>UNIPROTKB|Q9ULK4 [details] [associations]
symbol:MED23 "Mediator of RNA polymerase II transcription
subunit 23" species:9606 "Homo sapiens" [GO:0016592 "mediator
complex" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003713 "transcription coactivator activity" evidence=TAS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] Reactome:REACT_71 Reactome:REACT_111045 EMBL:CH471051
GO:GO:0006357 GO:GO:0005667 GO:GO:0003713 GO:GO:0006367
EMBL:AL121575 Orphanet:88616 GO:GO:0016592 eggNOG:NOG305557
KO:K15166 InterPro:IPR021629 Pfam:PF11573 CTD:9439 EMBL:AF105332
EMBL:AF135022 EMBL:AF104255 EMBL:AB033042 EMBL:AL136776
EMBL:BC060759 IPI:IPI00413272 IPI:IPI00472333 IPI:IPI00646226
IPI:IPI00844220 IPI:IPI00867654 RefSeq:NP_001257450.1
RefSeq:NP_001257451.1 RefSeq:NP_004821.2 RefSeq:NP_057063.2
UniGene:Hs.29679 ProteinModelPortal:Q9ULK4 DIP:DIP-31461N
IntAct:Q9ULK4 MINT:MINT-4719443 STRING:Q9ULK4 PhosphoSite:Q9ULK4
DMDM:28558074 PaxDb:Q9ULK4 PRIDE:Q9ULK4 DNASU:9439
Ensembl:ENST00000354577 Ensembl:ENST00000368053
Ensembl:ENST00000368060 Ensembl:ENST00000368068 GeneID:9439
KEGG:hsa:9439 UCSC:uc003qcq.3 UCSC:uc003qcs.1 UCSC:uc003qct.1
GeneCards:GC06M131895 HGNC:HGNC:2372 MIM:605042 MIM:614249
neXtProt:NX_Q9ULK4 PharmGKB:PA162395499 HOVERGEN:HBG051122
BindingDB:Q9ULK4 ChEMBL:CHEMBL4146 ChiTaRS:MED23 GenomeRNAi:9439
NextBio:35344 ArrayExpress:Q9ULK4 Bgee:Q9ULK4 Genevestigator:Q9ULK4
GermOnline:ENSG00000112282 Uniprot:Q9ULK4
Length = 1368
Score = 143 (55.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 144/723 (19%), Positives = 275/723 (38%)
Query: 503 WLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGAL 562
W S F V F V L +L G I +H+ W+L Q I + AL
Sbjct: 331 WQHLSSQLIFFVLFQFASFPHMVLSLHQKLA-GRGLIKGRDHLMWVLLQFISGSIQKNAL 389
Query: 563 NSDSRKVETTRKILSFHRED-RCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQ 621
+D V +L +E D N PQS F +C IW ++ + + +N +
Sbjct: 390 -ADFLPVMKLFDLLYPEKEYIPVPDINKPQSTHA-FAMTC----IW-IHLNRKAQNDNSK 442
Query: 622 LQ----KGKQID-EWWRQVSKGXXXXXXXXXXXXSVGMFWVVSYTMAQPACETVMNWLSS 676
LQ ++ E+ +Q + + S P ++ +
Sbjct: 443 LQIPIPHSLRLHHEFLQQSLRNKSLQMNDYKIALLCNAYSTNSECFTLPM-GALVETIYG 501
Query: 677 AGVTEL-FPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVA- 734
G+ + PG+N + + + +N L SL ++L +A ++ VA
Sbjct: 502 NGIMRIPLPGTNCMASGSITPL-PMNLLD-SLTVHAKMSLIHSIATRVIKLAHAKSSVAL 559
Query: 735 SIAMVETYTRLML-LAPHSLFRSLFSHLAQRNPSLLAKV--GVTPLVLEIVNYRL---LP 788
+ A+VETY+RL++ + SL + ++Q P++ G+ +LE+ +YR+ P
Sbjct: 560 APALVETYSRLLVYMEIESL--GIKGFISQLLPTVFKSHAWGILHTLLEMFSYRMHHIQP 617
Query: 789 LYRYQGKTKTLMYDITKIISALKVKRGD-H-----RVLRLAENLCMNLILSQRDFFSLKR 842
YR Q L+ + + + + + H LRL L + + Q F
Sbjct: 618 HYRVQ-----LLSHLHTLAAVAQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFLSDP 672
Query: 843 EGKGSTEFTETLNRITVIALAIIIK-TRGIADADHV--LYLQTMLEQIMATSQHTWSEKT 899
+ S E +E LNR ++ LA T +D + + + +L+ IM+ + H W+ T
Sbjct: 673 KTVLSAE-SEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMSFTPHNWASHT 731
Query: 900 LRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQ 959
L FP L+ + + ++ + V + + S S + + + P
Sbjct: 732 LSCFPGPLQ----AFFKQNNVPQESRFNLKKNVEEEYRKWKSMSNENDIITHFSMQGSPP 787
Query: 960 HRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGH 1019
+LC W ++ ++IN RVL + +++ T D L++ G
Sbjct: 788 --LFLCL-LWKMLL-ETDHINQIGY-RVLERIGARALVAHVRTFADFLVYEFSTSAG-GQ 841
Query: 1020 SLQDLLFKACANI-SFFVLTHEXXXXXXXXXXXXXXXXXXHALRIVITLLDRQELQQRVK 1078
L + + + ++T + I + LL + + RV
Sbjct: 842 QLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRVS 901
Query: 1079 LYCMNRGPPEHWLYSGLF-KRVELQKALGNHLSWK---ER----------Y-PTFFDDIA 1123
+ + PEHWL + K + K L ++ E+ Y P +F ++
Sbjct: 902 DF-VKENSPEHWLQNDWHTKHMNYHKKYPEKLYFEGLAEQVDPPVQIQSPYLPIYFGNVC 960
Query: 1124 ARLLPVIPLIVYRLIEN-DAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKL 1182
R LPV ++++R +E S + +L ++ +++ + L Y+ HL +
Sbjct: 961 LRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYEMHLRDRA 1020
Query: 1183 IVR 1185
++
Sbjct: 1021 FLK 1023
Score = 43 (20.2 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 20/62 (32%), Positives = 24/62 (38%)
Query: 316 WLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLH- 374
W L D R P LL E P AL +LE RDM+ + + QH
Sbjct: 241 WKL-DPATLRFPLKGLLPYDKDLFE--PQT-ALLRYVLEQPYSRDMVCNMLGLNKQHKQR 296
Query: 375 CP 376
CP
Sbjct: 297 CP 298
Score = 40 (19.1 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 300 LDKALIEWLHSCLDVIWLLVDEDRCRVPFY 329
+ A+++ L + +VI +++ + C +P Y
Sbjct: 152 VSSAVVQQLLAAREVIAYILERNACLLPAY 181
>UNIPROTKB|F1N8H3 [details] [associations]
symbol:MED23 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016592 "mediator complex" evidence=IEA]
GO:GO:0006355 GO:GO:0005667 GO:GO:0016592 InterPro:IPR021629
Pfam:PF11573 GeneTree:ENSGT00390000010380 OMA:QHKQRCP
EMBL:AADN02049814 EMBL:AADN02049813 IPI:IPI00589763
Ensembl:ENSGALT00000004401 Uniprot:F1N8H3
Length = 1392
Score = 156 (60.0 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 145/719 (20%), Positives = 273/719 (37%)
Query: 503 WLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGAL 562
W S F V F V L +L G I +H+ W+L Q I + AL
Sbjct: 352 WQHLSSQLIFFVLFQFASFPHMVLSLHQKLA-GRGLIKGRDHLMWVLLQFISGSIQKNAL 410
Query: 563 NSDSRKVETTRKILSFHREDRCT---DPNNPQSILLDFISSCQNLRIWSLNTSTREYLNN 619
+D V +L + E C D N PQS F +C IW ++ + + + +N
Sbjct: 411 -ADFLPVMKLFDLL--YPEKECIPVPDINKPQSTHA-FAMTC----IW-IHLNRKAHSDN 461
Query: 620 EQLQ-----KGKQIDEWWRQVSKGXXXXXXXXXXXXSVGMFWVVSYTMAQPACETVMNWL 674
+LQ K E+ +Q + + S P V
Sbjct: 462 SKLQIPIPHSLKHHHEFLQQSLRNKSLQMNDYKIALLCNAYSTNSECFTLPMGVLVETIY 521
Query: 675 SSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVA 734
+ + PG+N + + + +N L SL ++L +A ++ VA
Sbjct: 522 GNGNMRISLPGTNCMASGSITPL-PMNLLD-SLTVHAKMSLIHSIATRVIKLAHAKSSVA 579
Query: 735 -SIAMVETYTRLML-LAPHSLFRSLFSHLAQRNPSLLAKV--GVTPLVLEIVNYRL---L 787
+ A+VETY+RL++ + SL + ++Q P++ G+ +LE+ +YR+
Sbjct: 580 LAPALVETYSRLLVYMEIESL--GIKGFISQLLPTVFKSHAWGILHTLLEMFSYRMHHIQ 637
Query: 788 PLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILS------QRDFFSLK 841
P YR Q L+ + + A +R +++ E+ + LI + Q F
Sbjct: 638 PHYRVQ-----LLSHLHSL--AAVPQRNQNQLHLCVESTALRLITALGSSEVQPQFTRFL 690
Query: 842 REGKG--STEFTETLNRITVIALAIIIK-TRGIADADHV--LYLQTMLEQIMATSQHTWS 896
+ K S E +E LNR ++ LA T +D + + + +L+ IM+ + H W+
Sbjct: 691 SDPKTVLSAE-SEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMSFTPHNWA 749
Query: 897 EKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHS 956
TL FP+ L+ + + ++ + V + + S + + + +
Sbjct: 750 SHTLSCFPAPLQVFF----KQNNVPQESRFNLKKNVEEEYRKWKSMTNENEIITRFSVQG 805
Query: 957 FPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQ 1016
P +LC W ++ ++IN RVL + +++ T D L++
Sbjct: 806 SPP--LFLCL-LWKMLL-ETDHINQIGY-RVLERIGARALVAHVRTFADFLVYEFSTSAG 860
Query: 1017 RGHSLQDLLFKACANI-SFFVLTHEXXXXXXXXXXXXXXXXXXHALRIVITLLDRQELQQ 1075
G L + + + ++T + I + LL + +
Sbjct: 861 -GQQLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRN 919
Query: 1076 RVKLYCMNRGPPEHWLYSGLF-KRVELQKALGNHLSWK-------------ERY-PTFFD 1120
RV + + PEHWL + K + K L ++ +Y P +F
Sbjct: 920 RVSDF-VKENSPEHWLQNDWHTKHMSYHKKYPEKLYFEGLAEQVNPPVQIQPQYLPIYFG 978
Query: 1121 DIAARLLPVIPLIVYRLIEN-DAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHL 1178
++ R LPV ++++R +E S + +L ++ +++ + L Y+ HL
Sbjct: 979 NVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYERHL 1037
Score = 39 (18.8 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 6/30 (20%), Positives = 18/30 (60%)
Query: 300 LDKALIEWLHSCLDVIWLLVDEDRCRVPFY 329
+ A+++ L + +V+ +++ + C +P Y
Sbjct: 172 VSSAVVQQLLAAREVVAYILERNACLLPAY 201
Score = 39 (18.8 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 347 ALFTLILEIHRRRDMMAMHMQMLDQHLH-CP 376
AL +LE RDM+ + + QH CP
Sbjct: 289 ALLRYVLEQPYSRDMVCNMLGLNKQHKQRCP 319
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1450 1377 0.00089 124 3 11 22 0.36 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 634 (67 KB)
Total size of DFA: 621 KB (2274 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 117.51u 0.21s 117.72t Elapsed: 00:00:05
Total cpu time: 117.52u 0.21s 117.73t Elapsed: 00:00:05
Start: Tue May 21 13:09:51 2013 End: Tue May 21 13:09:56 2013