BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000514
(1450 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4I4P3|MED23_ARATH Mediator of RNA polymerase II transcription subunit 23 OS=Arabidopsis
thaliana GN=MED23 PE=1 SV=1
Length = 1615
Score = 2209 bits (5724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1082/1476 (73%), Positives = 1238/1476 (83%), Gaps = 56/1476 (3%)
Query: 4 NQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKTQKR 63
+QSQR+ A+ +SSR+YQFHPARAAIIDLFNLYLGR SRQK D+S+RDPPNK+QKR
Sbjct: 2 DQSQRT----VAATPSSSRSYQFHPARAAIIDLFNLYLGRGSRQKPDESLRDPPNKSQKR 57
Query: 64 VLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFA 123
V A NR+LPPRNEQFL+DFE LQSQF D +QLR++TESVLIS+VVQC +H PRAEF+LFA
Sbjct: 58 VHAPNRDLPPRNEQFLLDFELLQSQFNDPEQLRTITESVLISLVVQCSNHAPRAEFLLFA 117
Query: 124 LRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNS 183
LR+LC I YINWDTFLPSLLSSVS+AE S QG QA A + +S S S
Sbjct: 118 LRTLCRISYINWDTFLPSLLSSVSAAEASLSQGVQAAAATAGSSATSS----------QS 167
Query: 184 SNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQ---QFTTRVNSSV 240
S NP S LPS HGIGSP+ S ++ S ++ GQ + R + +
Sbjct: 168 VVPVSVNPTSLLPSAHGIGSPSASEVK-------SVENGQQIARAGQIVRENAMRNSQRI 220
Query: 241 RDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRL 300
R A++SLRQL CKIIL G+E SLKPVTHA+IF +M+NWLV WD++ G ++S GKSWR
Sbjct: 221 RAAAVNSLRQLSCKIILIGVESSLKPVTHAEIFQYMMNWLVNWDRRDLGTEDSVGKSWRS 280
Query: 301 DKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRD 360
+K L EWL SCLDVIWLLV+E R+PFYELLR+GLQFIENIPDDEALFTLI+EIHRRRD
Sbjct: 281 EKTLAEWLRSCLDVIWLLVEEGESRIPFYELLRSGLQFIENIPDDEALFTLIMEIHRRRD 340
Query: 361 MMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLA 420
MAMHM MLDQHLHCP+FGTHRI+SQ T N+ EA +LR+SPITYPSVLGEPL+GEDLA
Sbjct: 341 AMAMHMLMLDQHLHCPSFGTHRIVSQITANVPPEAVPHLRHSPITYPSVLGEPLYGEDLA 400
Query: 421 TSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQ-GPTPGAVFTYDMIS 479
SI +GSLDWERA+RCIRHAIR TPSPDWWKRVL+VAPCYR Q GP PGAVFT DMI
Sbjct: 401 MSIPKGSLDWERAVRCIRHAIRTTPSPDWWKRVLVVAPCYRPSTQAGPIPGAVFTSDMIC 460
Query: 480 EAVIDRIVELLKLTNS-------------------EVNCWHDWLIFSDVFFFLVKSGCID 520
EA+IDRIVELLKLTNS + NCW +WL+FSD+FFFL+KSGC D
Sbjct: 461 EAIIDRIVELLKLTNSGNDCFGIDLVSVTFPPLYADANCWQEWLVFSDIFFFLIKSGCTD 520
Query: 521 FVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHR 580
FVDF+DKLV RL DNHILRTNHVTWLLAQIIRVELVM ALNSD++KVETTRKILSFHR
Sbjct: 521 FVDFIDKLVLRLNGVDNHILRTNHVTWLLAQIIRVELVMTALNSDAKKVETTRKILSFHR 580
Query: 581 EDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDR 640
EDR +DPNNPQS+LLDF+SSCQNLRIWSL+T+TR YLNNEQL KGKQIDEWWR SKG+R
Sbjct: 581 EDRNSDPNNPQSVLLDFVSSCQNLRIWSLSTTTRAYLNNEQLLKGKQIDEWWR--SKGER 638
Query: 641 MMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREV 700
MMDYMNMDDRS+GMFWVVSYTMAQPACETV+NWLSSAG+ EL PG L PN+R+M+ +EV
Sbjct: 639 MMDYMNMDDRSIGMFWVVSYTMAQPACETVINWLSSAGMAEL-PG--LQPNDRVMMTQEV 695
Query: 701 NPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSH 760
PLPMSLL+GFS+NLCLKLALQME+++F QVV SIAMVETYTRL+L++PHS+FRS FS
Sbjct: 696 TPLPMSLLSGFSMNLCLKLALQMEEALFVSQVVPSIAMVETYTRLLLISPHSMFRSHFSQ 755
Query: 761 LAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVL 820
LAQRN SLL+K GVT LVLEI+NYRLLPLYRYQGK+KTLMYD+TKIISALK KRGDHR+
Sbjct: 756 LAQRNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSKTLMYDVTKIISALKGKRGDHRIF 815
Query: 821 RLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYL 880
RLAENLCMNLILS RDFFS+KREGKG TEFTETLNRIT++ LAI IKTRGIAD DH++YL
Sbjct: 816 RLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRITIMTLAITIKTRGIADPDHMVYL 875
Query: 881 QTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLL 940
QTMLEQI+ATSQHTWSEKT+R+FPSLLR+ L GR+DKRGL+IQAWQQAETTVINQCTQLL
Sbjct: 876 QTMLEQILATSQHTWSEKTMRHFPSLLRETLKGRVDKRGLSIQAWQQAETTVINQCTQLL 935
Query: 941 SPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNI 1000
SPSA+P YV TYLSHSFPQHRQYLCAGA +LMQGH ENINS NL RVLRE SPEEVT+NI
Sbjct: 936 SPSAEPAYVSTYLSHSFPQHRQYLCAGACLLMQGHAENINSTNLARVLREVSPEEVTANI 995
Query: 1001 YTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHA 1060
YT+VDVLLHH+HV+LQ+G SL+ +L KA AN++FF THE+LPLDI LLALIDRDDDPHA
Sbjct: 996 YTLVDVLLHHVHVDLQQGQSLEAVLDKAGANLAFFFWTHEMLPLDIFLLALIDRDDDPHA 1055
Query: 1061 LRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFD 1120
L I ++LL +L R+K YC NRG PEHWL + +FKR ELQKALGNHLSWK+RYPTFFD
Sbjct: 1056 LIIAMSLLKTPDLLLRIKNYCQNRGSPEHWLVTQVFKRNELQKALGNHLSWKDRYPTFFD 1115
Query: 1121 DIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPG 1180
DIAARLLPVIPL++YRLIEN+AM+ AD +L +S FLAY+PLRF+FVRDILAYFYGHLPG
Sbjct: 1116 DIAARLLPVIPLVLYRLIENNAMEQADNLLLAHSHFLAYHPLRFTFVRDILAYFYGHLPG 1175
Query: 1181 KLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKS 1240
KL++R+L V DLSKIPFSESFPQ+IS + +CPPLDYFA+LLL LVNNVIP L+ +S
Sbjct: 1176 KLVLRMLKVLDLSKIPFSESFPQYISPTGAPVCPPLDYFASLLLNLVNNVIPPLSSSSNC 1235
Query: 1241 -------GSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIE 1293
+++S R PH K+P TSQ GP+N SEG+K FYQ QDPGTYTQLVLETAVIE
Sbjct: 1236 SSRSGSMADILNSSARPPHGKTPGTSQPGPANASEGQKAFYQIQDPGTYTQLVLETAVIE 1295
Query: 1294 ILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGA 1353
ILSLPVSA+QIVSSLVQI+VNIQ TLIQ+ NG +GA+N VGQGSVLPTSPSGGSTDS+ A
Sbjct: 1296 ILSLPVSAAQIVSSLVQIIVNIQSTLIQSGNGFHGAANGVGQGSVLPTSPSGGSTDSMSA 1355
Query: 1354 SRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKES 1413
SRST + GINT+SFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFH+QLY+EA+R+ +E+
Sbjct: 1356 SRSTCLIPGINTASFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHVQLYLEAARVTRET 1415
Query: 1414 WWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAI 1449
WWL DGKRS GELDSAVGYAL+DPTWAAQDNTSTAI
Sbjct: 1416 WWLKDGKRSQGELDSAVGYALMDPTWAAQDNTSTAI 1451
>sp|Q9W1X7|MED23_DROME Mediator of RNA polymerase II transcription subunit 23 OS=Drosophila
melanogaster GN=MED23 PE=1 SV=1
Length = 1439
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 144/677 (21%), Positives = 274/677 (40%), Gaps = 113/677 (16%)
Query: 730 GQVVASIAMVETYTRLMLLAP-HSLFRSLFSHLAQRNPSLLAKVGVTPL--VLEIVNYRL 786
GQV A+ A++ETY RL++ SL + L+Q P++ L ++E+ +YRL
Sbjct: 559 GQVPAA-ALLETYARLLVYTEIESL--GIKGFLSQLMPTVFKNHAWAMLHTLMEMFSYRL 615
Query: 787 LPL---YRYQGKTKTLMYDITKIISALKVKRG-DHRVLRLAENLCMNLILSQ-RDFFSLK 841
+ YR Q + + +++ + LRL ++ Q +F+ K
Sbjct: 616 HHVPTHYRVQLLSLLHSLSSVPQTNKMQLNLCFESTALRLITSIGSAEFQPQFSRYFNDK 675
Query: 842 REGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLR 901
G ++ +E LNR+ ++ LA + G D + + + L I+ + H+W +L
Sbjct: 676 SPGAVASNESEELNRVLILTLARSMHVHGGGD-EMQGWCKDFLSNIIQHTPHSWPMHSLA 734
Query: 902 YFPSLLRDALIGR----IDKRGL--TIQAWQQAETTVINQ---CTQLLSPSADPTYVKTY 952
FP L + +K+ L ++ + T++ N+ L P+ +P +
Sbjct: 735 CFPPALNEYFTQNNQPPENKQQLKKAVEEEYRTWTSMTNENDIIAHFLRPTTNPLF---- 790
Query: 953 LSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIH 1012
LC I+ + ENI S ++L S +++++ D L+
Sbjct: 791 -----------LCLLFKIIWET--ENI-SPVAYKILEGISARALSTHLRKFCDYLV---- 832
Query: 1013 VELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHA-----LRIVITL 1067
E+ +D + K I+ + ++ +D ++L L R + + L I + L
Sbjct: 833 AEVASSSDGRDFIHKCVDTINNMIWKFNVVTIDRVVLCLALRTHEGNEAQVCFLIIQLLL 892
Query: 1068 LDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERY-----------P 1116
L EL+ RV+ +C + P +HW S K L H + E++ P
Sbjct: 893 LKASELRNRVQEFCKDNNP-DHWKQSNW-----QDKHLSFHQKYPEKFALDESASQIPLP 946
Query: 1117 TFFDDIAARLLPVIPLIVYRLIE---NDAMDSADRVLATYSSFLAYYPLRFSFVRDILAY 1173
+F ++ R LPV+ ++V+R IE + +L S ++ +++ + L Y
Sbjct: 947 VYFSNVCLRFLPVLDVVVHRFIELTITNVHQILGFILDHLSILYKFHDRPITYLYNTLHY 1006
Query: 1174 F------YGHLPGKLIVRILNVFDLSKIP---FSESFPQHISSSNPVMCPPLDYFATLLL 1224
+ L KL+ I + F + P SE + ++ S + + P L Y+ +L+
Sbjct: 1007 YERILRDRPALKKKLVGAITSAFSEIRPPNWSVSEPYKVYLQSQDSLWTPELSYYMSLIR 1066
Query: 1225 GLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQ 1284
L + + SG + S N+ P + P++
Sbjct: 1067 RLADTI---------SGKNVFYSTDWRFNEFP----NAPTH------------------- 1094
Query: 1285 LVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQG-SVLPTSP 1343
L +E+L LPV+ + S+L+ ++V+ + Q Y N+VG + LP
Sbjct: 1095 -ALYVTCVELLGLPVAPPLVASNLIDVIVSGYAVIPQKDIHSY--INAVGIVLAALPEPY 1151
Query: 1344 SGGSTDSLGASRSTPSV 1360
G D L +TP++
Sbjct: 1152 WSGIYDRLQDMLNTPNM 1168
>sp|Q55BN0|MED23_DICDI Putative mediator of RNA polymerase II transcription subunit 23
OS=Dictyostelium discoideum GN=med23 PE=3 SV=1
Length = 1662
Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 103/467 (22%), Positives = 202/467 (43%), Gaps = 60/467 (12%)
Query: 477 MISEAVIDRIVELL-KLTNS------EVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLV 529
+I+EA I + ++LL K N E N W +WL+FS+ F+FL ++G +D F+ L
Sbjct: 455 IITEATISKTMQLLNKYPNQIIENQIENNSWKEWLLFSEQFYFLCENGLVDLEQFIVTLS 514
Query: 530 -SRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRK------ILSFHRED 582
R+ +GD ++ N V L+++ I ++ V + V + +LSF D
Sbjct: 515 EKRMNNGDP--IKDNMVVLLISKTIIIQDVKTLFKQHLQNVNSNHYGHLIPLVLSFVNND 572
Query: 583 RCTDPNNPQSILLDFISSCQNLRIWSLNTST---------REYLNNEQLQKG--KQIDEW 631
P Q+I L F + +NT+T ++ L+N Q +Q W
Sbjct: 573 -SNYPIISQNISLYFF-------LMRINTNTENPEIIAHIKKLLDNFNFQFTLFQQYRNW 624
Query: 632 WRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTEL-FPGSNLPP 690
W + + + D + F ++ + ++ + S+ + FPG
Sbjct: 625 WESEKVKQKPEFFTTIQD--ITYFSIICNVIPTEGEMELIRFQSNGSDQSIQFPGVG--- 679
Query: 691 NERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAP 750
+V ++ P+ +L SL KL + + +V S +E Y R + P
Sbjct: 680 GIGTVVTGKIKPVSNLILLNLSLRCRRKLIQESVLLLLDKEVPISPGFLEDYCRTVHYTP 739
Query: 751 HSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKI---- 806
+ LFS+ + ++ V+E V++RLL + + + L+ + I
Sbjct: 740 GPVSPFLFSYFKK-----FHRLAPIHAVIESVSHRLLKVLKSNKELAVLLRALQDIQTQK 794
Query: 807 -ISALKVKRG-DHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAI 864
I +++ R D+ +L+ + +L ++LI + +E S + NR + ++A
Sbjct: 795 PIQNIQLSRSIDYLLLKASISLPVDLISA--------KEIWKSLDLGLFNNRRLITSIAR 846
Query: 865 IIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDAL 911
+IK +GI D + + + +E ++ + +S+ TL +FP +L++
Sbjct: 847 LIKLKGIQDFNRISDVPVFIENCFKSNPYCFSKSTLEFFPDILKNEF 893
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 77/167 (46%), Gaps = 20/167 (11%)
Query: 1036 VLTHELLPLDILLLALIDRDDDPHALRIVIT-LLDRQELQQRVKLYCMN----------R 1084
+ T+++L L+ +LLAL+DRDD P I+ T L E+Q R++ + R
Sbjct: 1052 IFTYKILTLNSVLLALLDRDDHPSMPTILDTFLFSSAEIQNRLQFFSTYPSDFFISQSFR 1111
Query: 1085 GPPEHWL--------YSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYR 1136
+++ ++ L V L + P ++ + +RL+P++ +I+ +
Sbjct: 1112 NDDNYFIKNCEFNNRFNDLIPTVIDPNTLIEQSTQDTILPIYYSNSISRLMPIVEIIISK 1171
Query: 1137 LIENDAMDSADRVLATYSSFLAYY-PLRFSFVRDILAYFYGHLPGKL 1182
IE + D ++ + ++ YY + + ++D L Y+Y KL
Sbjct: 1172 SIELNNGDLFEKTINHFNIPYHYYQDEKETTIKDTLIYYYDSQLFKL 1218
>sp|Q16HH9|MED23_AEDAE Mediator of RNA polymerase II transcription subunit 23 OS=Aedes
aegypti GN=MED23 PE=3 SV=1
Length = 1409
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 141/680 (20%), Positives = 266/680 (39%), Gaps = 124/680 (18%)
Query: 737 AMVETYTRLMLLAP-HSLFRSLFSHLAQRNPSLL--AKVGVTPLVLEIVNYRL---LPLY 790
A+VETY+RL++ SL F L Q P + A G+ +LE+ +YR+ P Y
Sbjct: 577 ALVETYSRLLVYTEIESLGIKGF--LGQLLPQVFKSAAWGILYTLLEMFSYRMHHIQPHY 634
Query: 791 RYQGKTKTLMYDITKIISALKVKRG------DHRVLRLAENLCMNLILSQRDFFSLKREG 844
R Q L+ + + S + + LRL L + +Q + +++
Sbjct: 635 RVQ-----LLSHLHSLASVPHTNQMQLHSCVESTALRLITGLGSVEVQAQMSRYVTEQKA 689
Query: 845 KGS--TEFTETLNRITVIALAIIIKTRGIA-DADHVLYLQTMLEQIMATSQHTWSEKTLR 901
G+ + +E LNR ++ LA ++ G D + + +L IM + HTWS+ TL+
Sbjct: 690 PGNIVSAESEELNRALILTLARSMQITGTGNDPQSTTWCKELLNSIMQNTPHTWSQHTLQ 749
Query: 902 YFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVK-TYLSHSFPQH 960
FP +L D ++ + V + QLL S D Y T +S+
Sbjct: 750 CFPPVLNDLVV----------------QHNVPKENKQLLKKSVDEEYRNWTSMSNENDII 793
Query: 961 RQYLCAGA--------WILMQGHPE-NINSANLLRVLREFSPEEVTSNIYTMVDVLLHHI 1011
+ AG +L + E + S ++L +++++ + D L+ +
Sbjct: 794 GHFGTAGTPGTPPLFLCLLFKMIVETDTISPVAYKILERIGARALSAHLRKLCDYLVFEV 853
Query: 1012 HVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALR-----IVIT 1066
H + K I+ + + ++ +D L+L L R + + + I +
Sbjct: 854 SNSGDGAH-----VNKCVDTINDMIWKYNIITIDRLVLCLSLRTLEGNEAQVSFCIIQLL 908
Query: 1067 LLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERY----------- 1115
LL E + R++ + ++ PEHW + +R L H + E++
Sbjct: 909 LLKTSEFRNRLQEF-VSINSPEHWKQNNWHER-----HLAFHQKFPEKFTPDESVSHPSL 962
Query: 1116 PTFFDDIAARLLPVIPLIVYRLIENDAMDSA--DRVLATYSSFLAYYPLRFSFVRDILAY 1173
P +F ++ R LPV+ + ++R +E A S D +L ++ +++ + L Y
Sbjct: 963 PVYFGNVCLRFLPVLDITIHRYLEVPAAMSKTLDVLLDHLGPLYKFHDRPITYLYNTLHY 1022
Query: 1174 F----------YGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLL 1223
+ L G +I + +V +E + ++S + +
Sbjct: 1023 YERMLRDRPQLKKRLVGTVIGSLKDVRP-DNWAVTEQYQSYMSKKDDAV----------- 1070
Query: 1224 LGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRK-EFYQNQDPGTY 1282
N +P LNY M ++ +N+ G F + +P +
Sbjct: 1071 -----NWMPDLNYYIYLVRRMQDTIDG-------------TNIFPGTDWRFNEFPNPPAH 1112
Query: 1283 TQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQ-GSVLPT 1341
L +E+L LPV + +SL+ +VV P + S + N++G + LP
Sbjct: 1113 A---LYVTCVELLGLPVGPQGVANSLIDVVVKGYPVI--PSQSVHNWINTIGLIMAALPE 1167
Query: 1342 SPSGGSTDSLGASRSTPSVS 1361
S G + L S P ++
Sbjct: 1168 SYWGVIYERLREVISCPQMT 1187
>sp|Q5RIW8|MED23_DANRE Mediator of RNA polymerase II transcription subunit 23 OS=Danio rerio
GN=med23 PE=2 SV=2
Length = 1376
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 184/883 (20%), Positives = 341/883 (38%), Gaps = 146/883 (16%)
Query: 503 WLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGAL 562
W S F V F V L +L G I +H+ W+L Q I + AL
Sbjct: 331 WQHLSSQLIFFVLFQFASFPHMVLSLHQKLA-GRGLIKGRDHLMWVLLQFISGSIQKNAL 389
Query: 563 NSDSRKVETTRKILSFHREDRCT---DPNNPQSILLDFISSCQNLRIWSLNTSTREYLNN 619
D V +L + E C D N PQS F +C IW ++ + + +N
Sbjct: 390 G-DFLPVMKLFDLL--YPEKECIPVPDINKPQSTH-AFAMTC----IW-IHLNRKAQNDN 440
Query: 620 EQLQ-----KGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQ----PACETV 670
+LQ K E+ +Q + + M D + + T ++ P V
Sbjct: 441 SKLQIPIPHSLKLHHEFLQQSLRNKSL----PMTDYKIALLCNAYSTNSECFTLPMGVLV 496
Query: 671 MNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFG- 729
+ + PG+N M V PLPM+LL +++ + L + +
Sbjct: 497 ETIYGNGSMRITLPGTNC------MASGSVTPLPMNLLDSLTVHAKMSLIHSIATRVIKL 550
Query: 730 ----GQVVASIAMVETYTRLML-LAPHSLFRSLFSHLAQRNPSLLAK--VGVTPLVLEIV 782
+ + A+VETY+RL++ + SL + ++Q P++ G+ +LE+
Sbjct: 551 AHAKSSLALAPALVETYSRLLVYMEIESL--GIKGFISQLLPNVFKSHAWGILHTLLEMF 608
Query: 783 NYRL---LPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLA-ENLCMNLILS----- 833
+YR+ P YR Q ++ + S V + + L L E+ + LI +
Sbjct: 609 SYRMHHIQPHYRVQL--------LSHLHSLAAVPQTNQNQLHLCVESTALRLITALGSSE 660
Query: 834 -QRDFFSLKREGKG--STEFTETLNRITVIALAIIIKTRGI---ADADHVLYLQTMLEQI 887
Q F + K S E +E LNR ++ LA +D+ + + +L+ I
Sbjct: 661 VQPQFTRFLNDPKTVLSAE-SEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTI 719
Query: 888 MATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPT 947
M + H W+ TL FP+ L+ + + ++ + V + + S + +
Sbjct: 720 MNFTPHNWASHTLSCFPAPLQ----AFFKQNNVPQESRFNLKKNVEEEYRKWKSMTNEND 775
Query: 948 YVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVL 1007
+ + P +LC +L++ ++IN RVL + +++ T D L
Sbjct: 776 IITHFSMQGSPP--LFLCLLWKMLLET--DHINQIG-FRVLERIGARALVAHVRTFADFL 830
Query: 1008 LHHIHVELQRGHSLQDLLFKACANI-SFFVLTHELLPLDILLLALIDRDDDPHALRIV-- 1064
++ E Q L C I + V + ++ LD L+L L R + + ++
Sbjct: 831 VY----EFSTSAGGQQL--NKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYF 884
Query: 1065 ---ITLLDRQELQQRVKLYCMNRGPPEHWLYSGLF-KRVELQKALGNHLSWK-------- 1112
+ LL + + RV + + PEHWL S K + K L ++
Sbjct: 885 IIQLLLLKPNDFRNRVSDF-VKENAPEHWLQSDWHTKHMTYHKKYPEKLYFEGLAEQVNP 943
Query: 1113 ------ERYPTFFDDIAARLLPVIPLIVYRLIE-NDAMDSADRVLATYSSFLAYYPLRFS 1165
+ P +F ++ R LPV ++++R +E S + +L ++ +
Sbjct: 944 PIQLQSQYLPIYFGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVT 1003
Query: 1166 FVRDILAYFYGH------LPGKLIVRILNVFDLSKIP---FSESFPQ--HISSSNPVMCP 1214
++ + L Y+ H L KL+ I++ ++ P SE++ + + + V P
Sbjct: 1004 YLYNTLHYYERHLRDRTNLKRKLVHAIMSSLKDNRTPGWCLSETYLKCGMNAREDNVWIP 1063
Query: 1215 PLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFY 1274
Y+ L+ LV+ + KSP GP + R F
Sbjct: 1064 DDTYYCKLIGRLVDTMA---------------------GKSP-----GPFPNCDWR--FN 1095
Query: 1275 QNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQP 1317
+ +P + L +E+++L V + ++L+ +V+ QP
Sbjct: 1096 EFPNPAAHA---LHVTCVELMALAVPGKDVGNALLNVVLKSQP 1135
>sp|Q5EB59|MED23_RAT Mediator of RNA polymerase II transcription subunit 23 OS=Rattus
norvegicus GN=Med23 PE=2 SV=2
Length = 1367
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 180/889 (20%), Positives = 346/889 (38%), Gaps = 167/889 (18%)
Query: 507 SDVFFFLVKSGCIDFVDFVDKLVSRLQD--GDNHILRTNHVTWLLAQIIRVELVMGALNS 564
S + FF++ F F ++S Q G I +H+ W+L Q I + AL +
Sbjct: 336 SQLIFFVL----FQFASFPHMVLSLHQKLAGRGLIKGRDHLMWVLLQFISGSIQKNAL-A 390
Query: 565 DSRKVETTRKILSFHREDRCT---DPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQ 621
D V +L + E C D N PQS F +C IW ++ + + +N +
Sbjct: 391 DFLPVMKLFDLL--YPEKECIPVPDINKPQSTH-AFAMTC----IW-IHLNRKAQNDNSK 442
Query: 622 LQ-----KGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSS 676
LQ K E+ +Q + + M+D + + T ++ C T L
Sbjct: 443 LQIPIPHSLKLHHEFLQQSLRNKSL----QMNDYKIALLCNAYSTNSE--CFT----LPM 492
Query: 677 AGVTELFPGSNLP----PNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFG--- 729
+ E G+ + P + V PLPM+LL +++ + L + +
Sbjct: 493 GALVETIYGNGIMRVPLPGTSCLASASVTPLPMNLLDSLTVHAKMSLIHSIATRVIKLAH 552
Query: 730 --GQVVASIAMVETYTRLML-LAPHSLFRSLFSHLAQRNPSLLAK--VGVTPLVLEIVNY 784
V + A+VETY+RL++ + SL + ++Q P++ G+ +LE+ ++
Sbjct: 553 TKSSVALAPALVETYSRLLVYMEIESL--GIKGFISQLLPTVFKSHAWGILHTLLEMFSH 610
Query: 785 RL---LPLYRYQGKTKTLMYDITKIISALKVKRG------DHRVLRLAENLCMNLILSQR 835
R+ P YR Q L+ + + + + + + LRL L + + Q
Sbjct: 611 RMHHIQPHYRVQ-----LLSHLHTLAAVAQTNQNQLHLCVESTALRLITALGSSEVQPQF 665
Query: 836 DFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGI---ADADHVLYLQTMLEQIMATSQ 892
F + S E +E LNR ++ LA +D+ + + +L+ IM +
Sbjct: 666 TRFLNDPKTVLSAE-SEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMTFTP 724
Query: 893 HTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTY 952
H W+ TL FP+ L+ + + ++ + V + + S + + + +
Sbjct: 725 HNWASHTLSCFPAPLQ----AFFKQNNVPQESRFNLKKNVEEEYRKWKSMTDENEIITQF 780
Query: 953 LSHSFPQHRQYLCAGAWILMQ-GHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHI 1011
FP +LC +L++ H I +VL + +++ T D L++
Sbjct: 781 SMQGFPP--LFLCLLWKMLLETDHISQIG----YKVLERIGARALVAHVRTFADFLVY-- 832
Query: 1012 HVELQRGHSLQDLLFKACANI-SFFVLTHELLPLDILLLALIDRDDDPHALRIV-----I 1065
E Q L C I + V + ++ LD L+L L R + + ++ +
Sbjct: 833 --EFSTSAGGQQL--NKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQL 888
Query: 1066 TLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERY---------- 1115
LL + + RV + + PEHWL S + H+S+ ++Y
Sbjct: 889 LLLKPNDFRNRVSDF-VKENSPEHWLQSDWHTK---------HMSYHKKYPEKLYFEGLA 938
Query: 1116 --------------PTFFDDIAARLLPVIPLIVYRLIE-NDAMDSADRVLATYSSFLAYY 1160
P +F ++ R LPV ++++R +E S + +L ++
Sbjct: 939 EQVDPPVPIQSPYLPIYFGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFH 998
Query: 1161 PLRFSFVRDILAYF------YGHLPGKLIVRILNVFDLSKIP---FSESFPQHISSS--- 1208
+++ + L Y+ HL KL+ I+ ++ S+++ +H ++
Sbjct: 999 DRPVTYLYNTLHYYEMCLRNRDHLKRKLVHAIIGSLKDNRPQGWCLSDTYLKHAMNARED 1058
Query: 1209 NPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSE 1268
NP + P Y+ L+ LV+ + KSP GP +
Sbjct: 1059 NPWV-PEDSYYCKLIGRLVDTMA---------------------GKSP-----GPFPNCD 1091
Query: 1269 GRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQP 1317
R F + +P + L +E+++L V + ++L+ +V+ QP
Sbjct: 1092 WR--FNEFPNPAAHA---LHVTCVELMALAVPGKDVGNALLNVVLKSQP 1135
>sp|Q80YQ2|MED23_MOUSE Mediator of RNA polymerase II transcription subunit 23 OS=Mus
musculus GN=Med23 PE=1 SV=2
Length = 1367
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 180/888 (20%), Positives = 343/888 (38%), Gaps = 165/888 (18%)
Query: 507 SDVFFFLVKSGCIDFVDFVDKLVSRLQD--GDNHILRTNHVTWLLAQIIRVELVMGALNS 564
S + FF++ F F ++S Q G I +H+ W+L Q I + AL +
Sbjct: 336 SQLIFFVL----FQFASFPHMVLSLHQKLAGRGLIKGRDHLMWVLLQFISGSIQKNAL-A 390
Query: 565 DSRKVETTRKILSFHREDRCT---DPNNPQSILLDFISSCQNLRIW-SLNTSTREYLNNE 620
D V +L + E C D N PQS F +C IW LN + +
Sbjct: 391 DFLPVMKLFDLL--YPEKECIPVPDINKPQSTH-AFAMTC----IWIHLNRKAQNGDSTL 443
Query: 621 QL---QKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSA 677
Q+ K E+ +Q + + M+D + + T ++ C T L
Sbjct: 444 QIPIPHSLKLHHEFLQQSLRNKSL----QMNDYKIALLCNAYSTNSE--CFT----LPMG 493
Query: 678 GVTELFPGSNLP----PNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFG---- 729
+ E G+ + P + V PLPM+LL +++ + L + +
Sbjct: 494 ALVETIYGNGIMRVPLPGTSCLASASVTPLPMNLLDSLTVHAKMSLIHSIATRVIKLAHT 553
Query: 730 -GQVVASIAMVETYTRLML-LAPHSLFRSLFSHLAQRNPSLLAK--VGVTPLVLEIVNYR 785
V + A+VETY+RL++ + SL + ++Q P++ G+ +LE+ ++R
Sbjct: 554 KSSVALAPALVETYSRLLVYMEIESL--GIKGFISQLLPTVFKSHAWGILHTLLEMFSHR 611
Query: 786 L---LPLYRYQGKTKTLMYDITKIISALKVKRG------DHRVLRLAENLCMNLILSQRD 836
+ P YR Q L+ + + + + + + LRL L + + Q
Sbjct: 612 MHHIQPHYRVQ-----LLSHLHTLAAVAQTNQNQLHLCVESTALRLITALGSSEVQPQFT 666
Query: 837 FFSLKREGKGSTEFTETLNRITVIALAIIIKTRGI---ADADHVLYLQTMLEQIMATSQH 893
F + S E +E LNR ++ LA +D+ + + +L+ IM + H
Sbjct: 667 RFLNDPKTVLSAE-SEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMNFTPH 725
Query: 894 TWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYL 953
W+ TL FP+ L+ + + ++ + V + + S + + + +
Sbjct: 726 NWASHTLSCFPAPLQ----AFFKQNNVPQESRFNLKKNVEEEYRKWKSMTDENEIITQFS 781
Query: 954 SHSFPQHRQYLCAGAWILMQ-GHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIH 1012
FP +LC +L++ H I +VL + +++ T D L++
Sbjct: 782 VQGFPP--LFLCLLWKMLLETDHISQIG----YKVLERIGARALVAHVRTFADFLVY--- 832
Query: 1013 VELQRGHSLQDLLFKACANI-SFFVLTHELLPLDILLLALIDRDDDPHALRIV-----IT 1066
E Q L C I + V + ++ LD L+L L R + + ++ +
Sbjct: 833 -EFSTSAGGQQL--NKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLL 889
Query: 1067 LLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERY----------- 1115
LL + + RV + + PEHWL S + H+S+ ++Y
Sbjct: 890 LLKPNDFRNRVSDF-VKENSPEHWLQSDWHTK---------HMSYHKKYPEKLYFEGLAE 939
Query: 1116 -------------PTFFDDIAARLLPVIPLIVYRLIE-NDAMDSADRVLATYSSFLAYYP 1161
P +F ++ R LPV ++++R +E S + +L ++
Sbjct: 940 QVDPPVPIQSPYLPIYFGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHD 999
Query: 1162 LRFSFVRDILAYF------YGHLPGKLIVRILNVFDLSKIP---FSESFPQHISSS---N 1209
+++ + L Y+ HL KL+ I+ ++ S+++ +H ++ N
Sbjct: 1000 RPVTYLYNTLHYYEMCLRNRDHLKRKLVHAIIGSLKDNRPQGWCLSDTYLKHAMNAREDN 1059
Query: 1210 PVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEG 1269
P + P Y+ L+ LV+ + KSP GP +
Sbjct: 1060 PWV-PEDSYYCKLIGRLVDTMA---------------------GKSP-----GPFPNCDW 1092
Query: 1270 RKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQP 1317
R F + +P + L +E+++L V + ++L+ +V+ QP
Sbjct: 1093 R--FNEFPNPAAHA---LHVTCVELMALAVPGKDVGNALLNVVLKSQP 1135
>sp|Q9ULK4|MED23_HUMAN Mediator of RNA polymerase II transcription subunit 23 OS=Homo
sapiens GN=MED23 PE=1 SV=2
Length = 1368
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 150/741 (20%), Positives = 293/741 (39%), Gaps = 115/741 (15%)
Query: 507 SDVFFFLVKSGCIDFVDFVDKLVSRLQD--GDNHILRTNHVTWLLAQIIRVELVMGALNS 564
S + FF++ F F ++S Q G I +H+ W+L Q I + AL +
Sbjct: 336 SQLIFFVL----FQFASFPHMVLSLHQKLAGRGLIKGRDHLMWVLLQFISGSIQKNAL-A 390
Query: 565 DSRKVETTRKILSFHRED-RCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQ 623
D V +L +E D N PQS F +C IW ++ + + +N +LQ
Sbjct: 391 DFLPVMKLFDLLYPEKEYIPVPDINKPQSTH-AFAMTC----IW-IHLNRKAQNDNSKLQ 444
Query: 624 ----KGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGV 679
++ + Q S ++ + M+D + + T ++ C T L +
Sbjct: 445 IPIPHSLRLHHEFLQQSLRNKSL---QMNDYKIALLCNAYSTNSE--CFT----LPMGAL 495
Query: 680 TELFPGSNLP----PNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFG-----G 730
E G+ + P M + PLPM+LL +++ + L + +
Sbjct: 496 VETIYGNGIMRIPLPGTNCMASGSITPLPMNLLDSLTVHAKMSLIHSIATRVIKLAHAKS 555
Query: 731 QVVASIAMVETYTRLML-LAPHSLFRSLFSHLAQRNPSLLAK--VGVTPLVLEIVNYRL- 786
V + A+VETY+RL++ + SL + ++Q P++ G+ +LE+ +YR+
Sbjct: 556 SVALAPALVETYSRLLVYMEIESL--GIKGFISQLLPTVFKSHAWGILHTLLEMFSYRMH 613
Query: 787 --LPLYRYQGKTKTLMYDITKIISALKVKRG------DHRVLRLAENLCMNLILSQRDFF 838
P YR Q L+ + + + + + + LRL L + + Q F
Sbjct: 614 HIQPHYRVQ-----LLSHLHTLAAVAQTNQNQLHLCVESTALRLITALGSSEVQPQFTRF 668
Query: 839 SLKREGKGSTEFTETLNRITVIALAIIIKTRGI---ADADHVLYLQTMLEQIMATSQHTW 895
+ S E +E LNR ++ LA +D+ + + +L+ IM+ + H W
Sbjct: 669 LSDPKTVLSAE-SEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMSFTPHNW 727
Query: 896 SEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSH 955
+ TL FP L+ + + ++ + V + + S S + + +
Sbjct: 728 ASHTLSCFPGPLQ----AFFKQNNVPQESRFNLKKNVEEEYRKWKSMSNENDIITHFSMQ 783
Query: 956 SFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVEL 1015
P +LC +L++ ++IN RVL + +++ T D L++ E
Sbjct: 784 GSPP--LFLCLLWKMLLET--DHINQIG-YRVLERIGARALVAHVRTFADFLVY----EF 834
Query: 1016 QRGHSLQDLLFKACANI-SFFVLTHELLPLDILLLALIDRDDDPHALRIV-----ITLLD 1069
Q L C I + V + ++ LD L+L L R + + ++ + LL
Sbjct: 835 STSAGGQQL--NKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLK 892
Query: 1070 RQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERY-------------- 1115
+ + RV + + PEHWL + + H+++ ++Y
Sbjct: 893 PNDFRNRVSDF-VKENSPEHWLQNDWHTK---------HMNYHKKYPEKLYFEGLAEQVD 942
Query: 1116 ----------PTFFDDIAARLLPVIPLIVYRLIE-NDAMDSADRVLATYSSFLAYYPLRF 1164
P +F ++ R LPV ++++R +E S + +L ++
Sbjct: 943 PPVQIQSPYLPIYFGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPV 1002
Query: 1165 SFVRDILAYFYGHLPGKLIVR 1185
+++ + L Y+ HL + ++
Sbjct: 1003 TYLYNTLHYYEMHLRDRAFLK 1023
>sp|Q6P423|MED23_XENLA Mediator of RNA polymerase II transcription subunit 23 OS=Xenopus
laevis GN=med23 PE=2 SV=1
Length = 1369
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 145/692 (20%), Positives = 266/692 (38%), Gaps = 101/692 (14%)
Query: 503 WLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGAL 562
W S F V F V L +L G I +H+ W+L Q I + AL
Sbjct: 331 WQHLSSQLIFFVLFQFASFPHMVLSLHQKLA-GRGLIKGRDHLMWVLLQFISGSIQKNAL 389
Query: 563 NSDSRKVETTRKILSFHREDRCT---DPNNPQSILLDFISSCQNLRIWSLNTSTREYLNN 619
+D V +L + E C D PQS F +C IW ++ + + +N
Sbjct: 390 -ADFLPVMKLFDLL--YPEKECIPVPDITKPQSTH-SFAMTC----IW-IHLNRKAQNDN 440
Query: 620 EQLQ-----KGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQ----PACETV 670
+LQ K E+ +Q + + M D + + T ++ P V
Sbjct: 441 SKLQIPIPHSLKLHHEFLQQSLRNKSL----QMTDYKIALLCNAYSTNSECFTLPMGVLV 496
Query: 671 MNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGG 730
+ V PGSN M + PLPM+LL +++ + L + +
Sbjct: 497 ETIYGNGNVNIPLPGSNC------MASGSITPLPMNLLDSLTVHAKMSLIHSIATRVIKM 550
Query: 731 QVVASI-----AMVETYTRLML-LAPHSLFRSLFSHLAQRNPSLLAK--VGVTPLVLEIV 782
S A+VETY+RL++ + SL + ++Q P++ G+ +LE+
Sbjct: 551 AQAKSTFALAPALVETYSRLLVYMEIESL--GIKGFISQLLPTVFKSHAWGILHTLLEMF 608
Query: 783 NYRL---LPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLA-ENLCMNLILS----- 833
+YR+ P YR Q ++ + S V + + L L E+ + LI +
Sbjct: 609 SYRMHHIQPHYRVQL--------LSHLHSLAGVPQTNQNQLHLCVESTALRLITALGSSE 660
Query: 834 -QRDFFSLKREGKG--STEFTETLNRITVIALAIIIKTRGIADADHVL---YLQTMLEQI 887
Q F + K S E +E LNR ++ +A + + + +L+ I
Sbjct: 661 VQPQFTRFLSDPKTVLSAE-SEELNRALILTIARATHVTDFFTGSESIQGTWCKDILQTI 719
Query: 888 MATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPT 947
++ + H W+ TL FP+ L+ + + ++ + V + + S + +
Sbjct: 720 ISFTPHNWALHTLSCFPAPLQ----AFFKQNNVPQESRFNLKKNVEEEYRKWKSMTNEND 775
Query: 948 YVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVL 1007
+ + P +LC +L++ + IN RVL + +++ T D L
Sbjct: 776 IITHFSLQGSPP--LFLCLLWKMLLET--DQINQIG-YRVLERIGARALVAHVRTFADFL 830
Query: 1008 LHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIV--- 1064
++ G L K ++ V + ++ LD L+L L R + + ++
Sbjct: 831 VYEFSTS-AGGQQLN----KCIEMLNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFI 885
Query: 1065 --ITLLDRQELQQRVKLYCMNRGPPEHWLYSGLF-KRVELQKALGNHLSWK--------- 1112
+ LL + + RV + + PEHWL + K + K L ++
Sbjct: 886 IQLLLLKPNDFRNRVSDF-VKENSPEHWLQNDWHTKHMNYHKKYPEKLYFEGLAEQVNPP 944
Query: 1113 -----ERYPTFFDDIAARLLPVIPLIVYRLIE 1139
+ P +F ++ R LPV ++++R +E
Sbjct: 945 VQIQPQYLPIYFGNVCLRFLPVFDIVIHRFLE 976
>sp|Q60UZ5|MED23_CAEBR Mediator of RNA polymerase II transcription subunit 23
OS=Caenorhabditis briggsae GN=sur-2 PE=3 SV=3
Length = 1589
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 124/307 (40%), Gaps = 28/307 (9%)
Query: 893 HTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTY 952
+ W EK+ +FP + I + D + L + TT ++ ++ + YV Y
Sbjct: 779 YGWPEKSTTFFPKWALEE-IKKTDVKKLAPNYAEILSTT--DEAFRMNTLLTGGQYVIRY 835
Query: 953 LSHSFPQHRQYLCAGAWILMQ--GHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHH 1010
P Y C A I Q PE ++ +V+ + SP+++ M + L+
Sbjct: 836 ADD--PNPITYHCMLAVIFKQLCSKPEQDLTSEYYQVMEKKSPKDIV----VMGNYLVDF 889
Query: 1011 IHVELQRGHSLQDLLFKACANISFFVLTH-ELLPLDILLLALI---DRDDDPH-ALRIVI 1065
I +++ + FK A + + H + D LL+LI D+D ++I
Sbjct: 890 IIADVKNNQDCNEQTFKTIAKTAALMCFHFNIHRADRFLLSLIMHPSTDEDAQICIQIAN 949
Query: 1066 TLLDRQELQQRVKLYCMNRGP-----PEHWL-----YSGLFKRVELQKAL--GNHLSWKE 1113
L + Q+R+K + N P P ++ Y F E + + +
Sbjct: 950 EFLLTPKFQERIKWFYENDVPRKEKDPYEYIKAIVKYHDAFPEFEACQLVPKNDDTGTNV 1009
Query: 1114 RYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAY 1173
PT++ + RLLP++ VY +E ++ +L S F Y+P+ F+ +L
Sbjct: 1010 HMPTYYGCLIERLLPILDQYVYVALEQQGYKMSNALLQLVSMFYRYHPMPIHFMYSVLFV 1069
Query: 1174 FYGHLPG 1180
+G + G
Sbjct: 1070 SHGKMAG 1076
>sp|Q5HT53|PPK_CAMJR Polyphosphate kinase OS=Campylobacter jejuni (strain RM1221) GN=ppk
PE=3 SV=1
Length = 694
Score = 39.3 bits (90), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 882 TMLEQIMATSQHTWSEKTL--RYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQL 939
T L+Q+ A ++ EK L RYF + + ++K L I+ ++ + + +C +
Sbjct: 74 TPLQQLKAIRKYLHQEKELLERYF-----NEITSELEKENLFIKHYENLDENLKQKCDEY 128
Query: 940 LSPSADPTYVKTYL--SHSFPQ-HRQYLCAGAWILMQGHPENINSA--NLLRVLREFSPE 994
+ P V + +H FP + I + HPE + + RVL F
Sbjct: 129 FFSNIFPVIVPIAVDATHPFPHLNNLSFSLAVKICDKAHPELVKFGMIRIPRVLPRFY-- 186
Query: 995 EVTSNIYTMVDVLLHHIHVELQRGHSL 1021
EV++NIY ++ ++H E+ G+ L
Sbjct: 187 EVSANIYVPIESIVHQHAEEIFPGYKL 213
>sp|A1W0X7|PPK_CAMJJ Polyphosphate kinase OS=Campylobacter jejuni subsp. jejuni serotype
O:23/36 (strain 81-176) GN=ppk PE=3 SV=1
Length = 694
Score = 39.3 bits (90), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 882 TMLEQIMATSQHTWSEKTL--RYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQL 939
T L+Q+ A ++ EK L RYF + + ++K L I+ ++ + + +C +
Sbjct: 74 TPLQQLKAIRKYLHQEKELLERYF-----NEITSELEKENLFIKHYENLDENLKQKCDEY 128
Query: 940 LSPSADPTYVKTYL--SHSFPQ-HRQYLCAGAWILMQGHPENINSA--NLLRVLREFSPE 994
+ P V + +H FP + I + HPE + + RVL F
Sbjct: 129 FFSNIFPVIVPIAVDATHPFPHLNNLSFSLAVKICDKAHPELVKFGMIRIPRVLPRFY-- 186
Query: 995 EVTSNIYTMVDVLLHHIHVELQRGHSL 1021
EV++NIY ++ ++H E+ G+ L
Sbjct: 187 EVSANIYVPIESIVHQHAEEIFPGYKL 213
>sp|Q9PMU0|PPK_CAMJE Polyphosphate kinase OS=Campylobacter jejuni subsp. jejuni serotype
O:2 (strain NCTC 11168) GN=ppk PE=3 SV=1
Length = 694
Score = 39.3 bits (90), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 882 TMLEQIMATSQHTWSEKTL--RYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQL 939
T L+Q+ A ++ EK L RYF + + ++K L I+ ++ + + +C +
Sbjct: 74 TPLQQLKAIRKYLHQEKELLERYF-----NEITSELEKENLFIKHYENLDENLKQKCDEY 128
Query: 940 LSPSADPTYVKTYL--SHSFPQ-HRQYLCAGAWILMQGHPENINSA--NLLRVLREFSPE 994
+ P V + +H FP + I + HPE + + RVL F
Sbjct: 129 FFSNIFPVIVPIAVDATHPFPHLNNLSFSLAVKICDKAHPELVKFGMIRIPRVLPRFY-- 186
Query: 995 EVTSNIYTMVDVLLHHIHVELQRGHSL 1021
EV++NIY ++ ++H E+ G+ L
Sbjct: 187 EVSANIYVPIESIVHQHAEEIFPGYKL 213
>sp|A8FN39|PPK_CAMJ8 Polyphosphate kinase OS=Campylobacter jejuni subsp. jejuni serotype
O:6 (strain 81116 / NCTC 11828) GN=ppk PE=3 SV=1
Length = 694
Score = 39.3 bits (90), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 882 TMLEQIMATSQHTWSEKTL--RYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQL 939
T L+Q+ A ++ EK L RYF + + ++K L I+ ++ + + +C +
Sbjct: 74 TPLQQLKAIRKYLHQEKELLERYF-----NEITSELEKENLFIKHYENLDENLKQKCDEY 128
Query: 940 LSPSADPTYVKTYL--SHSFPQ-HRQYLCAGAWILMQGHPENINSA--NLLRVLREFSPE 994
+ P V + +H FP + I + HPE + + RVL F
Sbjct: 129 FFSNIFPVIVPIAVDATHPFPHLNNLSFSLAVKICDKAHPELVKFGMIRIPRVLPRFY-- 186
Query: 995 EVTSNIYTMVDVLLHHIHVELQRGHSL 1021
EV++NIY ++ ++H E+ G+ L
Sbjct: 187 EVSANIYVPIESIVHQHAEEIFPGYKL 213
>sp|A7H220|PPK_CAMJD Polyphosphate kinase OS=Campylobacter jejuni subsp. doylei (strain
ATCC BAA-1458 / RM4099 / 269.97) GN=ppk PE=3 SV=1
Length = 694
Score = 38.1 bits (87), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 14/147 (9%)
Query: 882 TMLEQIMATSQHTWSEKTL--RYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQL 939
T L+Q+ A ++ EK L YF + + ++K L I+ ++ + + +C +
Sbjct: 74 TPLQQLKAIRKYLHQEKELLEHYF-----NEITSELEKENLFIKHYENLDENLKQKCDEY 128
Query: 940 LSPSADPTYVKTYL--SHSFPQ-HRQYLCAGAWILMQGHPENINSA--NLLRVLREFSPE 994
+ P V + +H FP + I + HPE + + RVL F
Sbjct: 129 FFSNIFPVIVPIAVDATHPFPHLNNLSFSLAVKIFDKAHPELVKFGMIRIPRVLPRFY-- 186
Query: 995 EVTSNIYTMVDVLLHHIHVELQRGHSL 1021
EV++NIY ++ ++H E+ G+ L
Sbjct: 187 EVSANIYVPIESIVHQHAEEIFPGYKL 213
>sp|Q10669|MED23_CAEEL Mediator of RNA polymerase II transcription subunit 23
OS=Caenorhabditis elegans GN=sur-2 PE=1 SV=1
Length = 1587
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 116/302 (38%), Gaps = 24/302 (7%)
Query: 895 WSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPT-YVKTYL 953
W EK+ YFP DA+ K T A E + T + S P +V Y
Sbjct: 774 WPEKSTSYFPKWALDAI-----KASDTSNAVNTEEILSDVRNTARMHTSLTPNQFVIRYG 828
Query: 954 SHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHV 1013
P C A + + ++ N+ E ++ I M + L+ +I +
Sbjct: 829 EDRDPATSH--CMLAVLFHFAYNSVDSTYNITSEFYEVMEKKTPKEIVVMGNYLVDYI-I 885
Query: 1014 ELQRGHSLQDLLFKACANIS-FFVLTHELLPLDILLLALI----DRDDDPHALRIVITLL 1068
+ + FK A + V ++L D LLL+LI +D ++I +
Sbjct: 886 ADAKTQDCNEKTFKNIAKAAALLVFQFQVLRADRLLLSLIMHPATDEDALICIQIANEFI 945
Query: 1069 DRQELQQRVKLYCMNRGPPEHW---------LYSGLFKRVELQKALGNHLSWKERY-PTF 1118
E Q+R++ Y N +H+ Y F E + + ++ S + PT+
Sbjct: 946 LTPEFQERIRWYHQNVPKKDHFPTEYIKAIVKYHDAFPEFEACELVRSYDSSSNVHMPTY 1005
Query: 1119 FDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHL 1178
+ + RLLP++ ++ +E ++L + S ++ + F+ +L +G +
Sbjct: 1006 YGCLIERLLPIMDQYLHVALEQQGYKLNPQILQSVSMLYKFHAMPIHFMYSVLFTSHGLM 1065
Query: 1179 PG 1180
G
Sbjct: 1066 SG 1067
>sp|Q96M86|DNHD1_HUMAN Dynein heavy chain domain-containing protein 1 OS=Homo sapiens
GN=DNHD1 PE=2 SV=2
Length = 4753
Score = 35.0 bits (79), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 586 DPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYM 645
D + Q L + + +C +R + + + + QK KQ + WW Q+ K R++DYM
Sbjct: 468 DTYHMQQCLQERVQNCDRIRTGQGSIYLQRVQHKQLEQKLKQAEAWWLQLGKFARLVDYM 527
>sp|O60518|RNBP6_HUMAN Ran-binding protein 6 OS=Homo sapiens GN=RANBP6 PE=1 SV=2
Length = 1105
Score = 34.3 bits (77), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 185 NYQSSNPASPLPSVHGIGSPAQSAIET--SVCAAMSPVKSSDVSCTGQQFTTRVNSSVRD 242
N + +NP + +G+G AQ + S+C+ P+ + C + T+ N +
Sbjct: 921 NMRDNNPEVRQAAAYGLGVMAQFGGDDYRSLCSEAVPLLVKVIKCANSK--TKKNVIATE 978
Query: 243 NAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGI 290
N IS++ ++ L+F V ++ H L+WL + K++ I
Sbjct: 979 NCISAIGKI--------LKFKPNCVNVDEVLPHWLSWLPLHEDKEEAI 1018
>sp|Q8BIV3|RNBP6_MOUSE Ran-binding protein 6 OS=Mus musculus GN=Ranbp6 PE=2 SV=3
Length = 1105
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 185 NYQSSNPASPLPSVHGIGSPAQSAIET--SVCAAMSPVKSSDVSCTGQQFTTRVNSSVRD 242
N + +NP + +G+G AQ + S+C+ P+ + C + T+ N +
Sbjct: 921 NMRDNNPEVRQAAAYGLGVMAQFGGDDYRSLCSEAVPLLVKVIKCANSK--TKKNVIATE 978
Query: 243 NAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGI 290
N IS++ ++ L+F V ++ H L+WL + K++ I
Sbjct: 979 NCISAIGKI--------LKFKPNCVNVDEVLPHWLSWLPLHEDKEEAI 1018
>sp|Q9EQS9|IGDC4_MOUSE Immunoglobulin superfamily DCC subclass member 4 OS=Mus musculus
GN=Igdcc4 PE=2 SV=1
Length = 1252
Score = 33.9 bits (76), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 29/188 (15%)
Query: 587 PNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQL-------QKGKQID--EWWRQVSK 637
P+ P + +SS L W R L++EQ+ QK + +D E+ V+
Sbjct: 428 PSAPTRVTATPLSSSSVLVAWE-----RPELHSEQIIGFSLHYQKARGVDNVEYQFAVNN 482
Query: 638 GDRMMDYMNMDDRSVGMFWVVSYTM------AQPACETVMNWLSSAGVTELFPGSNLPPN 691
+ +++ + F+VV+Y+ + PA ++ + SA +L S P +
Sbjct: 483 DTTELQVRDLEPNTDYEFYVVAYSQLGASRTSSPALVHTLDDVPSA-APQLTLSSPNPSD 541
Query: 692 ERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPH 751
R+ + PLP SL G L ++ L ED +F +V + ET L L P+
Sbjct: 542 IRVAWL----PLPSSLSNGQVLKYKIEYGLGKEDQVFSTEVPGN----ETQLTLNSLQPN 593
Query: 752 SLFRSLFS 759
++R S
Sbjct: 594 KVYRVRIS 601
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 520,009,994
Number of Sequences: 539616
Number of extensions: 21576471
Number of successful extensions: 54466
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 54117
Number of HSP's gapped (non-prelim): 343
length of query: 1450
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1320
effective length of database: 121,419,379
effective search space: 160273580280
effective search space used: 160273580280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)