Query 000514
Match_columns 1450
No_of_seqs 54 out of 56
Neff 3.2
Searched_HMMs 46136
Date Mon Apr 1 17:32:09 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1883 Cofactor required for 100.0 5E-271 1E-275 2354.1 42.9 1236 1-1446 1-1348(1517)
2 PF11573 Med23: Mediator compl 100.0 9E-193 2E-197 1760.6 49.8 900 431-1402 276-1267(1341)
3 KOG1883 Cofactor required for 99.8 1.7E-21 3.8E-26 235.3 8.4 372 436-834 296-697 (1517)
4 PF07719 TPR_2: Tetratricopept 32.7 37 0.00079 25.7 2.2 18 429-446 16-33 (34)
5 PF04782 DUF632: Protein of un 30.8 26 0.00056 41.3 1.6 52 301-356 244-310 (312)
6 COG0781 NusB Transcription ter 28.1 19 0.00042 38.4 -0.0 84 1214-1333 53-137 (151)
7 PF00515 TPR_1: Tetratricopept 25.1 62 0.0014 24.9 2.3 18 429-446 16-33 (34)
8 PF09759 Atx10homo_assoc: Spin 24.7 56 0.0012 33.1 2.5 41 88-131 17-61 (102)
9 PF09457 RBD-FIP: FIP domain ; 24.5 58 0.0012 29.4 2.2 24 518-541 23-46 (48)
10 PF01029 NusB: NusB family; I 23.3 28 0.00061 34.9 0.1 85 1213-1333 43-128 (134)
11 smart00028 TPR Tetratricopepti 22.2 83 0.0018 21.2 2.3 18 429-446 16-33 (34)
12 PRK09634 nusB transcription an 21.5 55 0.0012 36.8 1.9 85 1213-1333 110-194 (207)
13 PF10349 WWbp: WW-domain ligan 20.1 51 0.0011 33.8 1.2 25 513-537 15-39 (116)
No 1
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=100.00 E-value=4.8e-271 Score=2354.14 Aligned_cols=1236 Identities=24% Similarity=0.269 Sum_probs=1138.8
Q ss_pred CCccccccccccccccccccccccccchhhHhHHHHHHhhhcCCCCcCCCCCcCCCCchhhhHHhhccCCCCCCcchhhh
Q 000514 1 MDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKTQKRVLALNRELPPRNEQFLI 80 (1450)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~krv~a~~~~~~p~~eqf~~ 80 (1450)
|||++ | .++++.+ +||.++|||+|++++|+|+||+|+.+|+|++.++|+++|||||||++-|+++||+||||++
T Consensus 1 ~~~s~--~-~~met~~---~s~~~e~~~v~~i~~~~~sl~~~~~~rek~r~~~s~~~d~t~~r~~~~n~~~qe~~eQ~ll 74 (1517)
T KOG1883|consen 1 KPGSA--E-DTMETQD---TSSPQEVQKVNRIKEAFKSLVEENPTREKFRPLTSNIGDETALRIQFGNMMMQEKEEQSLL 74 (1517)
T ss_pred CCcch--h-hhhhccc---cccHHHHhhHHHHHHHHHHHhhcCCcccccchhhcCCCchhhHHHhcCCCCCCchhHHHHH
Confidence 45555 7 6777777 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhccCCChhHHhHHHHHHHhhhhhhcCCCCcchhHHHHHHHHhhhcccccccccHHHHhhhhhhhccccccccccc
Q 000514 81 DFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAM 160 (1450)
Q Consensus 81 df~~l~~qf~~~~ql~~~te~~~~~~~~qc~~h~p~~~fll~~~~~l~~~~~~~wd~~l~~ll~~~~~~e~~~~q~~~~~ 160 (1450)
||+-++.+|.+.+|+|.++|++|+++|.||++||||++|++| .||++|||+ ++|+++.|+++.+|.+..|++++.
T Consensus 75 ~~~l~~~h~~~~~~~r~~~~~~l~~lVdq~l~~a~~~~~i~~---~LC~~~li~--t~l~~l~s~i~ae~~kli~~vi~~ 149 (1517)
T KOG1883|consen 75 KELLKMVHGVAEKPDRVFLGTNLERLVDQLLRYARQKGAIST---NLCAEGLIM--TSLFRLCSRIWAEKFKLINDVIPK 149 (1517)
T ss_pred HHHHHHHhccCCccceehHHHHHHHHHHHhccccchhhhHHH---HHHHHHHhh--cchHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999 899999999 999999999999999999999985
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccccccccccccccccCCCCCCCC---ccccccc
Q 000514 161 PAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQ---QFTTRVN 237 (1450)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~ 237 (1450)
....+ ...++|. -|.|+||+ +|..+..|+-- .|-.+|+ ....|++
T Consensus 150 vdykG----vr~ilkv-----------------ilesa~~~-~P~svsv~~V~----------Qi~~a~~vir~i~dRns 197 (1517)
T KOG1883|consen 150 VDYKG----VRNILKV-----------------ILESALRR-LPYSVSVEQVN----------QILAAENVIRHIVDRNS 197 (1517)
T ss_pred hchhh----HHHHHHH-----------------HHHHHhcc-CCCccCHHHHH----------HHHHHHHHHHHHHhccc
Confidence 44433 2233433 46788888 77765544321 3444555 5567888
Q ss_pred ccccchhhhhhhhhhHHHhhhhcccccccccHHHHHHHHHHHHHhccccccCCCccCCccccchhHHHHHHHHHHHHHHH
Q 000514 238 SSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWL 317 (1450)
Q Consensus 238 ~~~~~~~~~~l~~l~c~i~l~~le~~lkp~t~~~i~~~~~~w~~~wd~~~~g~~~~~~~~~~~~~~~~~w~~~cl~viw~ 317 (1450)
...+. ++.|++|+.|.+. ||++|++++++|.+|+|+| ++..|++..=|++|++++.+++| .+|||++|.
T Consensus 198 ~llpa-------~~~~~eImrg~p~--~~l~h~~l~~~m~d~vv~f-R~~a~~~~i~Gr~~~~pi~l~~~-~~~l~~~W~ 266 (1517)
T KOG1883|consen 198 CLLPA-------YFTLSEIMRGMPK--QALMHWRLTELMADFVVHF-RPTADLSSICGRGSVLPIVLHPG-FYPLTNSWE 266 (1517)
T ss_pred cccch-------HHhHHHHHhcCCc--ccccHHHHHHHHHHHHHHh-cccccchhhcccccccccccccC-cccchhhhe
Confidence 88776 8999999999998 9999999999999999999 88889988889999999999999 999999999
Q ss_pred HhcCCCcccchHHHhhccccccccCCChhHHHHHHHHHhhchhhHHHHHhhhccccCCCCccccccccccCCcccccccc
Q 000514 318 LVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAG 397 (1450)
Q Consensus 318 lv~e~~~rvpfy~ll~~~~q~~e~~pddeal~~l~~e~hrrrd~~~~hm~~ldqhlhcptf~t~~~~~~~~~~~~~~~~~ 397 (1450)
|+-++ -|.|||+++|++.+++|++|||+|||++|||+|+|||.|||||+|.|||+|||||++|||.++.+.++-.||+.
T Consensus 267 l~~~~-~r~pf~~~~~slpy~~E~~~~~~all~~Ileqp~~RDv~~Ml~L~~~qk~rcp~~~e~lI~~~I~a~e~~EAe~ 345 (1517)
T KOG1883|consen 267 LDGLT-LRFPFKGPHHSLPYRPELTETQLALLRYILEQPYSRDVMAMLSLHKPQKQRCPTLEEQLISLMICAMEMAEAES 345 (1517)
T ss_pred ecccc-ccccccccccccCCChhhccchHHHHHHHHhhhcchhHHHHhhcCchhhhcCCcHHHHhHHHhhhccccccccc
Confidence 98888 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcccCCCcchhhhhhhccCCCccHHHHHHHHHHHhhcCCChhhhhhhheeccccCCCCC-CCCCcceeccc
Q 000514 398 NLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQ-GPTPGAVFTYD 476 (1450)
Q Consensus 398 ~lr~s~~ty~~~~ge~l~ge~~a~~~~~~~~~~e~a~rc~~~~~r~~~s~d~w~~vl~~ap~~~~~~~-~~~~~~~f~~~ 476 (1450)
++|.|||+ +|.||+++++|.+|+| ++++|+||++|++| ++|+++||||...| ++.+|+||+++
T Consensus 346 ~~~~spi~-------~l~w~~Ls~~liygvl---~~~~~~~h~v~~l~------~~L~~~~~~r~rdq~mwI~~qviss~ 409 (1517)
T KOG1883|consen 346 LPETSPIP-------RLQWDHLSSQLIYGVL---FQFLSFKHFVLVLH------NKLKRCKLTRGRDQLMWILLQVISSS 409 (1517)
T ss_pred cccCCCCC-------hhHHHHHHHHHHHHHH---HHHHhHHHHHHHHH------HHHhhcCcccccchhheeeHHHhhhh
Confidence 99999999 9999999999999999 99999999999998 99999999999999 99999999999
Q ss_pred hhhHHHHHHHHHHccccc--------------ccccchhhhHhhhhHHHHHHhcccccHHHHHHHHHhhhccCCcccccc
Q 000514 477 MISEAVIDRIVELLKLTN--------------SEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRT 542 (1450)
Q Consensus 477 mi~ea~i~r~~~ll~~~~--------------~~~~~w~ewl~fsd~f~fl~~~g~~d~~~fi~~l~~r~~~gd~~~~~~ 542 (1450)
|+|+|.+||++|++|++| +.-+||++||.|+|+|++|+|+||.||.||+++| +|++|+
T Consensus 410 i~~~al~D~~lev~kL~n~lf~~dlv~~~~pdin~~~~~r~la~~~iwi~L~Kka~~Df~d~~~pl--------nh~Lr~ 481 (1517)
T KOG1883|consen 410 IQKNALDDAFLEVVKLFNLLFPGDLVWMGAPDINKALFARFLAAACIWIHLEKKACTDFADKMPPL--------NHTLRS 481 (1517)
T ss_pred hhhhhHHHHHHHHHHHHHhhcCcceeeecCCCcCHHHHHHHHHHhhhhhhhhhhhccchhhccCcc--------cHHHHH
Confidence 999999999999999832 2238999999999999999999999999999999 899999
Q ss_pred chHHHHHHHHHHHHHHHHhhhccchhhhhhhhhhccccccCCCCCCCCcchhhhhhccccceEEEEeecchHHhcCHHHh
Q 000514 543 NHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQL 622 (1450)
Q Consensus 543 nhv~wll~q~i~~~~v~~al~~~~~~V~t~~~ilsf~~~d~~~d~n~pqs~~~df~~s~q~l~iw~ln~~~~~~l~~~~l 622 (1450)
|+ |+|+|++|.+.+| +|-.||+++++|+ |++++..|+++|++.+||+++||||+|||.+.+++|+++++++|
T Consensus 482 -H~-~fLqq~vr~~~~m----~n~~kia~l~niy--~~~t~~~~~~~Pm~~LLe~i~~~~t~ri~~lst~~~A~~~~t~l 553 (1517)
T KOG1883|consen 482 -HI-KFLQQGVRNFDSM----SNDAKIALLCNIY--RTSTNMEKFIVPMGQLLESISSNGTKRIPELSTKRMAVNSFTAL 553 (1517)
T ss_pred -HH-HHHHHHHHhhhhc----cchHHHHHHHHHH--hccccccccCCcHHHHHHHHhcCCccccCCCCcceeeecccchh
Confidence 88 9999999999999 5567999999999 99999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHhhcCCccccccccCcccceeeeeehhccccchhhHHHHHhhcCccccccCCCCCCCCccccccccccc
Q 000514 623 QKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNP 702 (1450)
Q Consensus 623 q~~k~~~eww~~~~kgk~~~dy~N~Dd~~i~m~~VlS~~~a~P~~dtvm~~l~~~~v~e~ipg~~~~pn~si~a~~~~tP 702 (1450)
-+++ +|+||... ||||+++|++.+||||+++.++|+|.|++..+|.++++..+
T Consensus 554 pv~~-lDslt~~s-----kmsli~~~~~~l~sf~tv~l~~aq~~~~va~~~~s~~~~~~--------------------- 606 (1517)
T KOG1883|consen 554 PVEF-LDSLTVHS-----KMSLIHQCFQPLRSFSTVRLKSAQVKETVAKACESEDYEMA--------------------- 606 (1517)
T ss_pred hHHH-HHHHHHHH-----HHHHHHhcccccceeEEEEecccccchhhhhccccchhhhh---------------------
Confidence 9999 99999966 89999999999999999999999999988999988666655
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHhhhcCCCcCCchHHHHHHHhhhcccc-chhhhh------------hhhhhhccchhh
Q 000514 703 LPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPH-SLFRSL------------FSHLAQRNPSLL 769 (1450)
Q Consensus 703 LpmsLLDsLTvHaKmsLl~qI~~~lfs~~~lPSPAlVETYsRLLvyte~-sL~iK~------------F~~LsQ~lpsV~ 769 (1450)
-|.+|||+|+++|+|+ ++++|+ | ++|.+|+|+
T Consensus 607 ---------------------------------~~~le~~arllv~~ei~sl~isg~~~~~~~~~~~~F--lsqllptv~ 651 (1517)
T KOG1883|consen 607 ---------------------------------VALLETYARLLVYVEIESLGISGEHQNVQAKDQCYF--LSQLLPTVF 651 (1517)
T ss_pred ---------------------------------hcccchhhhhheeeeeeccccCchhhhhhhHHhhhH--HHHHHHHHH
Confidence 2457888888888888 577777 7 999999999
Q ss_pred h--ccchhhHHHHHHhccc---cccccccCCchhhHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhhh---------
Q 000514 770 A--KVGVTPLVLEIVNYRL---LPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQR--------- 835 (1450)
Q Consensus 770 k--a~giLhtLLEilSYRL---~p~YRyqlks~~llhsL~~iis~l~nq~qnH~llrllEs~~LrLIl~l~--------- 835 (1450)
+ +|+.+|+++|++|||+ +++||.|+.+. +|.+..+ ++.|.+|.|. |+|++++|+|+++|
T Consensus 652 ~~hay~~l~tl~~~~syr~hhiq~~~r~~ll~~--l~~~~lv--p~~~~~g~h~---ci~s~a~rliTalk~ae~~~q~~ 724 (1517)
T KOG1883|consen 652 KHHAYSKLHTLVEMFSYRTHHIQNHYRVQLLSR--LHELFLV--PQTNWAGLHL---CIESTALRLITALKSAEMQPQFA 724 (1517)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH--HHHHHhh--HHHHhhhhhh---hHHHHHHHHHHHhcccchhHhHh
Confidence 9 9999999999999999 89999999997 8988777 8999999998 99999999999986
Q ss_pred cccccccCCCCcchhhHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHhhCCCCCchhhhccCc-HHHHHHHhcc
Q 000514 836 DFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFP-SLLRDALIGR 914 (1450)
Q Consensus 836 rf~~~kk~~~~ps~~SEELNR~LILTLARsIKitGiad~~~g~~~~~~L~~Im~ntph~WpekTLr~FP-~~Lre~f~~n 914 (1450)
|||++|.||++|++|||||||++|+||||++||||++|.++|.|||+||++|+++|||+||+||++||| ..|..+|.+|
T Consensus 725 ~ffs~k~pg~~psa~seeLnR~~IlTlara~kvtggad~i~~vw~ktml~tIi~~t~h~W~ektls~FP~~aL~a~~~q~ 804 (1517)
T KOG1883|consen 725 RFFSDKVPGQVPSAESEELNRMLILTLARAVKVTGGADDIQGVWCKTMLPTIINTTPHGWPEKTLSCFPKWALDAIFAQN 804 (1517)
T ss_pred hhcccCCCCcCcccccHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHHHHHHhcCCCCCchhhhhhCCcHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999 5666666555
Q ss_pred cCCCCcchhhHHHHHHHHHHHHhhccCCCCChhhHhhhhcccCCCCCcchHHHHHHHhhCCCCCCCchhHHHHHhhcChh
Q 000514 915 IDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPE 994 (1450)
Q Consensus 915 iD~~~l~i~n~qql~ttVeeE~rql~Sms~E~~~V~~yi~hf~p~~~~fLCllw~ml~~~~~dnIns~~~yrVLerispk 994 (1450)
|.+++||||++++|+||||+|+||+|||+||..|+.|- .||+|||+++...|.+|+||||+++ |||||++|||
T Consensus 805 ----~~~~en~qql~~~V~ne~r~~tSmsnen~~V~~yl~~~--~p~~~lCll~~~~m~~~teNIns~~-yrVLe~ispr 877 (1517)
T KOG1883|consen 805 ----NSPAENTQQLKKDVENEYRMWTSMSNENDIVIHYLEDR--DPPLFLCLLFAYKMVDETENINSEF-YRVLEKISPR 877 (1517)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhccCC--CchhHHHHHHHHHhcccccccCHHH-HHHHHhcCHH
Confidence 88999999999999999999999999995555555442 4799999996666666999999999 9999999999
Q ss_pred HHHHhhhhhhchhhhhhhccccCCCchhHHHHHHHhHhhhhhhhccccchhhhhhhhccCCCCCc-----hhHHHHHhcC
Q 000514 995 EVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPH-----ALRIVITLLD 1069 (1450)
Q Consensus 995 eltahvr~fvDyLV~ef~~~lq~g~~~Q~lv~k~v~~LndmIWkynIvpLDRLLLaLilR~dEg~-----~liIQlLLL~ 1069 (1450)
|+++|+||||||||+|++.+ .++|++++||+++||+||||||++|+||||||||||++||+ ++|||+||++
T Consensus 878 elva~~~tlvDyLvad~~t~----~~~e~~l~k~~~~la~mvwkf~vl~lDrllL~Limr~~~~nda~vc~~Ia~~lLlt 953 (1517)
T KOG1883|consen 878 ELVAHGRTLVDYLVADAKTS----DCGEKTLKKCAKALALMVWKFNVLTLDRLLLCLIMRPHEGNDAQVCIQIAQLLLLT 953 (1517)
T ss_pred HHHHHHHHHHHHhhhhhhcc----cchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccccCCcchhHHHHHHHHhcC
Confidence 99999999999999999854 66799999999999999999999999999999999998777 5555655555
Q ss_pred cHHHHHHHHHHHHcCCCCCcccccch------hhhhhhHHH---Hccc--CCCCCCCCcchhhhHhhhcCchhHHHHHHh
Q 000514 1070 RQELQQRVKLYCMNRGPPEHWLYSGL------FKRVELQKA---LGNH--LSWKERYPTFFDDIAARLLPVIPLIVYRLI 1138 (1450)
Q Consensus 1070 ~~EFqnRV~~Fv~~~~spEHW~qsd~------yhrkfPEea---Lg~~--~s~~~~lPvYFgNVclR~LPViDivIhR~L 1138 (1450)
+ |||+||++||+. |+||||+ ++| ||++|||+. ++++ .+.++|||+||||||+|||||+|+|+||+|
T Consensus 954 p-df~~RI~~yck~-nsPeHwl-~~~~~k~~~yhka~pe~~~~e~~~qyd~~~~~~lPtyf~~v~~RlLPV~d~vlhr~l 1030 (1517)
T KOG1883|consen 954 P-DFRNRIRWYCKQ-NSPEHWL-TEWIKKHVKYHKAYPEKEACELARQYDSSSNVHLPTYFGNVCLRLLPVMDQVLHRFL 1030 (1517)
T ss_pred H-HHHHHHHHHHhc-CCcchhh-HHHHHHHHHHHHhcchHHHHHHHHhcCCccccCCccHHHHHHHHHhccHHHHHHHHH
Confidence 5 999999999996 9999999 888 799999964 4555 344789999999999999999999999999
Q ss_pred cCCcc-chHHHHHHhhhhhhhcCCcchHHHHHHHHhhhccC---ch--HHHHHHHhhccCCCCCCCcchhhhccCCCCCC
Q 000514 1139 ENDAM-DSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHL---PG--KLIVRILNVFDLSKIPFSESFPQHISSSNPVM 1212 (1450)
Q Consensus 1139 E~~~~-k~letLL~~~g~LYkYHd~PvTFvYntL~Yye~~L---p~--kLV~~ILg~Ld~~r~~LSEsF~~y~~~~~~~w 1212 (1450)
|+.++ |.+++||+|+|.||||||+|||||||||||||+|| |+ |||.+|.++|++ ++|||+|.||+++++..|
T Consensus 1031 E~~~~~k~~~~lL~hls~lykfH~~pitflyntl~y~~~hL~~~p~kk~lv~a~~~~lse--i~lSE~f~k~~~q~~ap~ 1108 (1517)
T KOG1883|consen 1031 ELQGVEKLLPQLLDHLSMLYKFHDRPITFLYNTLHYYEHHLRDRPLKKKLVLAIATQLSE--IRLSEAFEKFNHQKGAPW 1108 (1517)
T ss_pred HHhhHHHHHHHHHHHHHHHHhcCCCceehhHHHHHHHHhhhhcCcchhhHHHHHhhhhhh--CccchhHHHHhccCCCCC
Confidence 99998 99999999999999999999999999999999999 44 799999999998 569999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccccccccCCCCCCcccccccCCCCCCCCCCCCCCCCCCccCcccccCCCCcchhhhhhhccch
Q 000514 1213 CPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVI 1292 (1450)
Q Consensus 1213 ~Pd~~Yy~~Ll~RLVnnvl~~~~~~~~s~~~~~as~r~~~t~f~a~s~~~P~~fs~~DWRF~EfpNPga~alyvL~tACI 1292 (1450)
+|+++|||.||+||||++.+++ ||+|+.+||||+||||||+||+| .+||
T Consensus 1109 ~pel~y~~sLi~rLvdt~~~~l----------------------------~~~f~ncdwR~~e~~n~~a~al~---~~cv 1157 (1517)
T KOG1883|consen 1109 SPELDYYMSLIDRLVDTLDGKL----------------------------TPPFVNCDWRFNEFPNPGAHALY---VTCV 1157 (1517)
T ss_pred CCcHHHHHHHHHHHHhhcCCCC----------------------------CCCCcccccccccCCCccccccc---cchh
Confidence 9999999999999998886541 34788899999999999999977 6889
Q ss_pred hhccCCCCHHHHHHHHHHHhhccCCccccCCCCCcccccccCCC-CCCCCCCCCCcccccccCCCCCccc----------
Q 000514 1293 EILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQG-SVLPTSPSGGSTDSLGASRSTPSVS---------- 1361 (1450)
Q Consensus 1293 ELMaLPv~p~~Vv~aLIDVV~~~~s~~p~~~~~~~~~iNaIGLi-taLP~Sys~~~~d~i~~~~Stp~~s---------- 1361 (1450)
|+|++|++|..+|++|+||++++|+.+|+. +.|+|++|++ +|||++||.++||++++..++|++.
T Consensus 1158 elma~~~sgp~~asalinv~~~~q~~~p~~----~~~~na~~l~itaLP~~y~~~l~d~lv~vivnp~~t~~t~~~gf~~ 1233 (1517)
T KOG1883|consen 1158 ELMALPVSGPTVASALINVMQMKQHARPFN----QLIVNATGLLITALPEPYWNALHDRLVAVIVNPQSTGETANLGFEF 1233 (1517)
T ss_pred hhcCCCCCcHhHHHHHHHHHhhCCCCCchh----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHcCccccchhhcCCCce
Confidence 999999999999999999999999999933 6799999999 9999999999999999987776655
Q ss_pred --------------------------------CccccccccCCcccchhhhhHHHHHhhhhhhcCChhHHHHHHHHHHhH
Q 000514 1362 --------------------------------GINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRI 1409 (1450)
Q Consensus 1362 --------------------------------g~n~s~f~s~~~~~~~~ls~l~iqacgllLaqlP~~fh~~~y~e~~r~ 1409 (1450)
|++..+|.||+ |||++|+|..+|+|++.|++||++||.++|+|++|.
T Consensus 1234 ~~fd~~~~s~l~~~ps~a~Tl~a~s~s~~lh~si~~lsf~sr~-yt~~ll~cvkte~~llyl~~L~~pfl~r~qle~~r~ 1312 (1517)
T KOG1883|consen 1234 ILFDFYEESLLLNEPSRARTLNAISHSVWLHCSISLLSFFSRE-YTERLLPCVKTEKQLLYLLHLVGPFLQRKQLESQRE 1312 (1517)
T ss_pred eeccccchhccccCCccchhhHHHHhHHHhhcchHHHHhhhHH-hHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhh
Confidence 78888999999 999999999999999999999999999999999999
Q ss_pred hhh-ccccccCCCCcchhhhhhcccccCCcccccCCCc
Q 000514 1410 IKE-SWWLADGKRSLGELDSAVGYALLDPTWAAQDNTS 1446 (1450)
Q Consensus 1410 ~k~-~wwl~d~~~~~~e~d~~~gy~~~dp~w~~~d~t~ 1446 (1450)
..| .|||.|++++.+|.| |||+++||+|+++||++
T Consensus 1313 ~~e~~~~l~d~l~s~~e~~--v~l~ymdpicd~~yn~k 1348 (1517)
T KOG1883|consen 1313 NFEIVVLLYDKLGSVDEEG--VELVYMDPICDFLYNCK 1348 (1517)
T ss_pred hhhhHHHHHHHhhhhhhcC--CceeecchHHHHHhhhh
Confidence 999 999999999999999 99999999999999998
No 2
>PF11573 Med23: Mediator complex subunit 23; InterPro: IPR021629 Med23 is one of the subunits of the Tail portion of the Mediator complex that regulates RNA polymerase II activity. Med23 is required for heat-shock-specific gene expression, and has been shown to mediate transcriptional activation of E1A in mice.
Probab=100.00 E-value=9.2e-193 Score=1760.60 Aligned_cols=900 Identities=31% Similarity=0.445 Sum_probs=783.2
Q ss_pred HHHHHHHHHHhhcCCChhhhhhhheeccccCCCCCCCCCcceeccchhhHHHHHHHHHHcccc-----cccccchhhhHh
Q 000514 431 ERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLT-----NSEVNCWHDWLI 505 (1450)
Q Consensus 431 e~a~rc~~~~~r~~~s~d~w~~vl~~ap~~~~~~~~~~~~~~f~~~mi~ea~i~r~~~ll~~~-----~~~~~~w~ewl~ 505 (1450)
+.=.|.+|..||..=|.|-=--+| +.++|..+ ....=|..++=|+|+|..+ +++.++|+ |+.
T Consensus 276 ~~q~~lL~~vL~Qp~srd~v~~~l------~~~~~k~~------~~~~ee~l~~li~~aM~~~e~~~~~~~~~~~~-W~h 342 (1341)
T PF11573_consen 276 EPQTRLLYYVLRQPYSRDMVCSML------GLQQQKQR------CPALEELLVDLIIEAMEESESEDENEPINRWQ-WLH 342 (1341)
T ss_pred chHHHHHHHHHcCcchHHHHHHHh------cccccCcc------chHHHHHHHHHHHHHHHHHhcCCCCCCccchH-HHH
Confidence 456789999999988888544443 33322221 1112244455556666653 45669999 999
Q ss_pred hhhHHHHHHhcccccHHHHHHHHHhhhccCCccccccchHHHHHHHHHHHHHHHHhhhccchhhhhhhhhhccccccCCC
Q 000514 506 FSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCT 585 (1450)
Q Consensus 506 fsd~f~fl~~~g~~d~~~fi~~l~~r~~~gd~~~~~~nhv~wll~q~i~~~~v~~al~~~~~~V~t~~~ilsf~~~d~~~ 585 (1450)
||++++|+|..||+||.+||++|..++++.+ ++.++|||||+|+|+|+++++||+|++|.++|.++.++|++++|....
T Consensus 343 ls~~viy~~l~~~i~F~~~v~~L~~kL~~~~-~~r~Rd~vMWvllQ~is~~i~~n~lsd~~~~v~~L~~~Ly~e~e~l~~ 421 (1341)
T PF11573_consen 343 LSSQVIYFMLFQFISFPDFVKKLHEKLTGRN-YRRGRDHVMWVLLQFISGSIQKNPLSDDFQPVLDLYNLLYPEKEPLPV 421 (1341)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc-eeeccchhHHHHHHHHhhhhccccchhhHHHHHHHHHHhccCCCCCCC
Confidence 9999999999999999999999999999855 789999999999999999999999999999999999999999999744
Q ss_pred CCCCCcchhhhhhccccceEEEE-eecch--HHhcCHHHhhh-hhhHHHHHHHhhcCCccccccccCcccceeeeeehh-
Q 000514 586 DPNNPQSILLDFISSCQNLRIWS-LNTST--REYLNNEQLQK-GKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSY- 660 (1450)
Q Consensus 586 d~n~pqs~~~df~~s~q~l~iw~-ln~~~--~~~l~~~~lq~-~k~~~eww~~~~kgk~~~dy~N~Dd~~i~m~~VlS~- 660 (1450)
...||++...+|+++| ||. |||++ +.+..++++.+ .|+|+|||++..+ +.+++|||++++||+||+||
T Consensus 422 pd~~~~~~v~~~aaaC----iWi~L~kk~~~~~~~~~~~i~~~lk~~~e~l~~~~~---~~~~~n~d~~~~~~lavl~Na 494 (1341)
T PF11573_consen 422 PDDNPPSCVRFFAAAC----IWIHLSKKAQSKNYEINRQIPEHLKQIHEFLQHLTS---PNNIMNLDMRSDYMLAVLCNA 494 (1341)
T ss_pred CCCCcHHHHHHHHHHH----HHHHHHhhccccccccccCCcHHHHHHHHHHHHHhc---Cccccccccccchhhhhhhhh
Confidence 4455777777899999 886 77776 45558899988 5999999998874 55589999999999999985
Q ss_pred -ccccchhhHHHHHhhcCccccccCCCCCCCCccccccccccccchhhhhhhhHHHHHHHHHHHHHhhh----cCCCcC-
Q 000514 661 -TMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIF----GGQVVA- 734 (1450)
Q Consensus 661 -~~a~P~~dtvm~~l~~~~v~e~ipg~~~~pn~si~a~~~~tPLpmsLLDsLTvHaKmsLl~qI~~~lf----s~~~lP- 734 (1450)
.+++|.++++|+|+.+.+..+.-+++.+.++.+++|+++++||||+|||+||+|+||+|++||+++++ +++.+|
T Consensus 495 Ys~~~~~~~~vm~~l~~~i~g~~~~~~~~~~~~~~~a~~~~~Plpm~lLd~LT~h~k~sL~~~i~~~l~~~a~~k~~~P~ 574 (1341)
T PF11573_consen 495 YSTDQPYFDRVMNWLVEAIDGEPDPSQPFELSYGRMAFNKTSPLPMSLLDSLTVHSKMSLIHSIVTHLFKFAQSKQPVPA 574 (1341)
T ss_pred hccCcHHHHHHHHHHHHHhccCCCCCCCCCCCccccccCCCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCc
Confidence 77889999999999998888856655556788999999999999999999999999999999999994 478899
Q ss_pred ----CchHHHHHHHhhhcccc-chhhhhhhhhhhccc-----hhhh--ccchhhHHHHHHhccccccccccCCchhhHHH
Q 000514 735 ----SIAMVETYTRLMLLAPH-SLFRSLFSHLAQRNP-----SLLA--KVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYD 802 (1450)
Q Consensus 735 ----SPAlVETYsRLLvyte~-sL~iK~F~~LsQ~lp-----sV~k--a~giLhtLLEilSYRL~p~YRyqlks~~llhs 802 (1450)
+||+||||+|+|+|+|+ +||+|+| .+|..| .++| |||++|+|||||||||+++++| +|.+.++|.
T Consensus 575 ~~~~s~alvETY~rlL~~~eiesL~~r~l--~s~~~~~~~~~~~~k~~a~~~l~~LlEilsYRL~~l~~~-~k~~~L~~l 651 (1341)
T PF11573_consen 575 VFETSPALVETYSRLLVYKEIESLGIRSL--ASQLVPDRSPNTVQKSQAWGQLHTLLEILSYRLHHLQPY-YKVQLLSHL 651 (1341)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhHh--HHhhcccccccccccccchHHHHHHHHHHHhcccccCcc-chHHHHHHH
Confidence 99999999999999999 6899999 777766 7777 9999999999999999665555 777666666
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHhhh---------ccccc-ccCCCCcchhhHHHHHHHHHHHHHHHHhcccc
Q 000514 803 ITKIISALKVKRGDHRVLRLAENLCMNLILSQR---------DFFSL-KREGKGSTEFTETLNRITVIALAIIIKTRGIA 872 (1450)
Q Consensus 803 L~~iis~l~nq~qnH~llrllEs~~LrLIl~l~---------rf~~~-kk~~~~ps~~SEELNR~LILTLARsIKitGia 872 (1450)
.+.+ ..+++||||+++|+||+|||||++++ +|+.+ |.++...+++||||||++|+||||+|||||++
T Consensus 652 ~~~~---~~~~~~n~qL~~~~E~~~Lrli~~Lgs~~~~~~~~~~~~~~k~Pk~~~~~~seELNR~lIltLARsikitg~~ 728 (1341)
T PF11573_consen 652 HTLI---SVNQPNNHQLYRLLENTCLRLITGLGSSEKQPQLSRFFNECKNPKTFTSQESEELNRILILTLARSIKITGIG 728 (1341)
T ss_pred HHHh---ccCccccHHHHHHHHHHHHHHHHHcCccccchHHHHHHHhccCccccccccCHHHHHHHHHHHHHHHhccccc
Confidence 5544 35788899999999999999999987 46666 45666778899999999999999999999866
Q ss_pred cch-hhhhHHHHHHHHHhhCCCCCchhhhccCcHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHhhccCCCCChhhHhh
Q 000514 873 DAD-HVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKT 951 (1450)
Q Consensus 873 d~~-~g~~~~~~L~~Im~ntph~WpekTLr~FP~~Lre~f~~niD~~~l~i~n~qql~ttVeeE~rql~Sms~E~~~V~~ 951 (1450)
... ++.||+++|++||+++||+||+||++|||++|+++|+++.+++ ++|||++++|++||++|.++++|++||+.
T Consensus 729 ~~~~~~~~~~e~L~~i~~~t~h~Wp~~Tl~~FP~~l~~~~~~~~~~~----~~~~~~~~~ve~e~~~~~~~~~e~~~v~~ 804 (1341)
T PF11573_consen 729 ADSQSQEWCKEFLEQIMANTPHGWPEKTLRCFPDFLREFFEQNNDTR----EPKQQQKKQVEEEYRQWLSMSNENQIVMH 804 (1341)
T ss_pred ccchhhhHHHHHHHHHHHhCCCCCchHHHHhCCHHHHHHHHhCCCCC----cccHHHHHhHHHHHHHHHccCChHHHHHH
Confidence 544 6899999999999999999999999999999999999974553 78999999999999999999999977766
Q ss_pred hhcccCCCCCcchHHHHHHHh--hCCCCCCCchhHHHHHhhcChhHHHHhhhhhhchhhhhhhccccCCCchhHHHHHHH
Q 000514 952 YLSHSFPQHRQYLCAGAWILM--QGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKAC 1029 (1450)
Q Consensus 952 yi~hf~p~~~~fLCllw~ml~--~~~~dnIns~~~yrVLerispkeltahvr~fvDyLV~ef~~~lq~g~~~Q~lv~k~v 1029 (1450)
|++| ++|++|||++|||++ ..++|+|++++ |||||+||||++++|+||||||||+||+++ +++++ ++||+
T Consensus 805 f~~~--~~~~~fLC~i~~~l~~~~~~~~~i~~~~-y~vLe~i~p~~l~~~i~~fvDylv~e~~~~----~~~~~-~~k~v 876 (1341)
T PF11573_consen 805 FSDH--NTHPLFLCVIWKMLMENQDETENISSVF-YKVLERISPRELTAHIRTFVDYLVYEFKVS----QDGQQ-LFKCV 876 (1341)
T ss_pred hccC--CCCceeHHHHHHHHHhhhcccccccHHH-HHHHHhcCHHHHHHHHHHHHHHHHHHHhcC----CcHHH-HHHHH
Confidence 6666 579999999999999 45667999987 999999999999999999999999999975 33456 88999
Q ss_pred hHhhhhhhhccccchhhhhhhhccCCCCCc-----hhHHHHHhcCcHHHHHHHHHHHHcCCCCCcccccch------hhh
Q 000514 1030 ANISFFVLTHELLPLDILLLALIDRDDDPH-----ALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGL------FKR 1098 (1450)
Q Consensus 1030 ~~LndmIWkynIvpLDRLLLaLilR~dEg~-----~liIQlLLL~~~EFqnRV~~Fv~~~~spEHW~qsd~------yhr 1098 (1450)
++||+|||||||||+|||||||++||+||+ ++|||++|++++||||||++||++ ++||||+++|| ||+
T Consensus 877 ~~L~~~iw~~~ivplDrllL~L~~r~~~d~~a~i~~~Ii~~lll~~~ef~~Rv~~F~~~-~~~ehw~~~~~~~k~~~yh~ 955 (1341)
T PF11573_consen 877 DTLNDMIWKYNIVPLDRLLLALALRPHDDNDAQICFQIIQLLLLKSPEFQNRVQWFVKI-NPPEHWTQSDWFKKHLEYHS 955 (1341)
T ss_pred HHHHHHHHHhceeeHHHHHHHHhccCCCchhhHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCHhhcccchHHHHHHHHHH
Confidence 999999999999999999999999997776 568999999999999999999999 99999999999 589
Q ss_pred hhhHHH----HcccCC-----CCCCCCcchhhhHhhhcCchhHHHHHHhcCCc---cchHHHHHHhhhhhhhcCCcchHH
Q 000514 1099 VELQKA----LGNHLS-----WKERYPTFFDDIAARLLPVIPLIVYRLIENDA---MDSADRVLATYSSFLAYYPLRFSF 1166 (1450)
Q Consensus 1099 kfPEea----Lg~~~s-----~~~~lPvYFgNVclR~LPViDivIhR~LE~~~---~k~letLL~~~g~LYkYHd~PvTF 1166 (1450)
||||++ ++++.+ ++++||+||||+|+|||||+||+|||+||+++ .|+||++|++|||||||||+|+||
T Consensus 956 kfPE~f~~e~~~~~~~~~~~~~~~~lPvYfgn~~lR~LPVlDivi~R~lE~~~~~~~~~le~lL~~~~~LyryH~~P~tf 1035 (1341)
T PF11573_consen 956 KFPEKFYFEALGSHTSSEESSQNPHLPVYFGNVCLRLLPVLDIVIHRFLELPAPPLSKSLETLLDHYGPLYRYHDRPVTF 1035 (1341)
T ss_pred hCCcccCchhhccccCcccCCCCCCCCchhccHHHHHhhhHHHHHHHHHHhcchhhHHHHHHHHHHhhHHHHcCCcchHH
Confidence 999954 666644 78899999999999999999999999999994 378999999999999999999999
Q ss_pred HHHHHHhhhccCchH----HHHHHHhhccCCCC---CCCcchhhhccCCC--CCCCCCHHHHHHHHHHHHhccccccccC
Q 000514 1167 VRDILAYFYGHLPGK----LIVRILNVFDLSKI---PFSESFPQHISSSN--PVMCPPLDYFATLLLGLVNNVIPALNYN 1237 (1450)
Q Consensus 1167 vYntL~Yye~~Lp~k----LV~~ILg~Ld~~r~---~LSEsF~~y~~~~~--~~w~Pd~~Yy~~Ll~RLVnnvl~~~~~~ 1237 (1450)
||+||||||++|+++ ||++|+|+++++|+ +|||+|.+|+++++ .+|+||++||++||+|||+++-
T Consensus 1036 ~y~tL~yy~~~l~~~~kk~Lv~~i~g~l~~~~~~~~~lSe~f~~~~~~~~~~~~~~P~~~Y~~~Li~rL~~~~~------ 1109 (1341)
T PF11573_consen 1036 LYSTLHYYEGKLRGRPKKKLVSAILGSLDESRPPGWPLSESFQQYLHQKSSPEVWVPDLDYYMELIDRLVDTID------ 1109 (1341)
T ss_pred HHHHHHHHhhccCCchHHHHHHHHHhhcccccCCCcccCHHHHHHhcccCCCCCCCCcHHHHHHHHHHHHHhcc------
Confidence 999999999999995 99999999999996 49999999999876 3599999999999999996552
Q ss_pred CCCCCcccccccCCCCCCCCCCCCCCCCCCccCcccccCCCCcchhhhhhhccchhhccCCCCHHHHHHHHHHHhhccCC
Q 000514 1238 SKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQP 1317 (1450)
Q Consensus 1238 ~~s~~~~~as~r~~~t~f~a~s~~~P~~fs~~DWRF~EfpNPga~alyvL~tACIELMaLPv~p~~Vv~aLIDVV~~~~s 1317 (1450)
++ .+|+.|+.+||||+|||||++|||| ++||||||||++|++||+||||||+++++
T Consensus 1110 --------~~-------------~~~~~f~~~dwrf~Ef~np~a~aL~---~~ciElmalP~~p~~v~~aLidvv~~~~~ 1165 (1341)
T PF11573_consen 1110 --------GI-------------NPPPPFVATDWRFNEFPNPAAHALY---VTCIELMALPVSPEDVANALIDVVVKGYS 1165 (1341)
T ss_pred --------cc-------------CCCCCCCCCCcchhcCCCHHHHHHH---HHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Confidence 11 2356889999999999999999877 78899999999999999999999999999
Q ss_pred ccccCCCCCcccccccCCC-CCCCCCCCCCcccccccCCCCCcccCcc--ccccc-----c----CCc------ccchhh
Q 000514 1318 TLIQTSNGPYGASNSVGQG-SVLPTSPSGGSTDSLGASRSTPSVSGIN--TSSFV-----S----RSG------YTCQQL 1379 (1450)
Q Consensus 1318 ~~p~~~~~~~~~iNaIGLi-taLP~Sys~~~~d~i~~~~Stp~~sg~n--~s~f~-----s----~~~------~~~~~l 1379 (1450)
.+| .+++++|+||||++ ||||++||+++||++++..+++.+.+.+ .+.|. . ..+ -++-++
T Consensus 1166 ~~P--~~~i~~~iNaigLiltaLP~~Y~~~l~~~ii~~l~s~~~~~~~~~~~pf~~~~F~~~~~~~l~~~~~~~~~~lal 1243 (1341)
T PF11573_consen 1166 VIP--REQIHSWINAIGLILTALPESYWNVLHDRIIEVLTSPEMTNLTYRCSPFELFNFDNYEESMLEKMTNPYSYILAL 1243 (1341)
T ss_pred CCC--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhCCccccccccCCChhHhhccchHHHHHHHhhhhhHHHHHHH
Confidence 999 78899999999999 9999999999999999999999998888 22222 2 111 224499
Q ss_pred hhHHHHHhhh-hhhcCChhHHHHH
Q 000514 1380 SCLLIQACGL-LLAQLPPDFHMQL 1402 (1450)
Q Consensus 1380 s~l~iqacgl-lLaqlP~~fh~~~ 1402 (1450)
+|++|+|||+ +|+.+|.++.+++
T Consensus 1244 ~ha~w~H~~i~qL~~lp~~~~e~l 1267 (1341)
T PF11573_consen 1244 AHAYWHHCNIGQLTSLPQFLKEKL 1267 (1341)
T ss_pred HHHHHHhcCHHHHHHhHHHHHHhh
Confidence 9999999999 9999999887764
No 3
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=99.84 E-value=1.7e-21 Score=235.33 Aligned_cols=372 Identities=16% Similarity=0.147 Sum_probs=284.0
Q ss_pred HHHHHhhcCCChhhhhhhheeccccCCCCC-CCCCcceeccchhhHHHHHHHHHHcccccccccchhhhHhhhhHHHHHH
Q 000514 436 CIRHAIRATPSPDWWKRVLLVAPCYRNPAQ-GPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLV 514 (1450)
Q Consensus 436 c~~~~~r~~~s~d~w~~vl~~ap~~~~~~~-~~~~~~~f~~~mi~ea~i~r~~~ll~~~~~~~~~w~ewl~fsd~f~fl~ 514 (1450)
.+|-.|+---|.| =-..|-+ ..++-| -|+-|----+.|||+-.-....+++.-. +.+.|+ |..-|-+.-|.+
T Consensus 296 ll~~Ileqp~~RD-v~~Ml~L---~~~qk~rcp~~~e~lI~~~I~a~e~~EAe~~~~~s--pi~~l~-w~~Ls~~liygv 368 (1517)
T KOG1883|consen 296 LLRYILEQPYSRD-VMAMLSL---HKPQKQRCPTLEEQLISLMICAMEMAEAESLPETS--PIPRLQ-WDHLSSQLIYGV 368 (1517)
T ss_pred HHHHHHhhhcchh-HHHHhhc---CchhhhcCCcHHHHhHHHhhhccccccccccccCC--CCChhH-HHHHHHHHHHHH
Confidence 4555566555555 2222222 222223 6777777778888887666666655444 345775 666666554444
Q ss_pred hcccccHHHHHHHHHhhhccCCccccccchHHHHHHHHHHHHHHHHhhhccchhhhhhhhhhcc-ccccC-CCCCCCCcc
Q 000514 515 KSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSF-HREDR-CTDPNNPQS 592 (1450)
Q Consensus 515 ~~g~~d~~~fi~~l~~r~~~gd~~~~~~nhv~wll~q~i~~~~v~~al~~~~~~V~t~~~ilsf-~~~d~-~~d~n~pqs 592 (1450)
=.-..-|--||-.|- |.-.+-.-+-.++|++|.+.|+|...++|||+.+-.-.|.+....|.. ..+.- .||+|+++.
T Consensus 369 l~~~~~~~h~v~~l~-~~L~~~~~~r~rdq~mwI~~qviss~i~~~al~D~~lev~kL~n~lf~~dlv~~~~pdin~~~~ 447 (1517)
T KOG1883|consen 369 LFQFLSFKHFVLVLH-NKLKRCKLTRGRDQLMWILLQVISSSIQKNALDDAFLEVVKLFNLLFPGDLVWMGAPDINKALF 447 (1517)
T ss_pred HHHHHhHHHHHHHHH-HHHhhcCcccccchhheeeHHHhhhhhhhhhHHHHHHHHHHHHHhhcCcceeeecCCCcCHHHH
Confidence 455566667776554 333333334567899999999999999999999966688888888877 66665 899999999
Q ss_pred hhhhhhccccceEEEE-eecchHHhcCHHHhhh-----hhhHHHHHHHhhcCCccccccccCcccce----ee--eeehh
Q 000514 593 ILLDFISSCQNLRIWS-LNTSTREYLNNEQLQK-----GKQIDEWWRQVSKGDRMMDYMNMDDRSVG----MF--WVVSY 660 (1450)
Q Consensus 593 ~~~df~~s~q~l~iw~-ln~~~~~~l~~~~lq~-----~k~~~eww~~~~kgk~~~dy~N~Dd~~i~----m~--~VlS~ 660 (1450)
... ++++| ||+ |+|+ +..|+.+++. .|.+-++.+|..|++-+| .||+.|+ .| +...+
T Consensus 448 ~r~-la~~~----iwi~L~Kk--a~~Df~d~~~plnh~Lr~H~~fLqq~vr~~~~m----~n~~kia~l~niy~~~t~~~ 516 (1517)
T KOG1883|consen 448 ARF-LAAAC----IWIHLEKK--ACTDFADKMPPLNHTLRSHIKFLQQGVRNFDSM----SNDAKIALLCNIYRTSTNME 516 (1517)
T ss_pred HHH-HHHhh----hhhhhhhh--hccchhhccCcccHHHHHHHHHHHHHHHhhhhc----cchHHHHHHHHHHhcccccc
Confidence 999 99999 999 7998 7888777765 888888999988887655 3333333 22 33444
Q ss_pred ccccchhhHHHHHhhcCccccccCCCCCCCCccccccccccccchhhhhhhhHHHHHHHHHHHHHhh--hcCCCcCCchH
Q 000514 661 TMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSI--FGGQVVASIAM 738 (1450)
Q Consensus 661 ~~a~P~~dtvm~~l~~~~v~e~ipg~~~~pn~si~a~~~~tPLpmsLLDsLTvHaKmsLl~qI~~~l--fs~~~lPSPAl 738 (1450)
.+..|+| .+.++++|+|... +|. ++..++|.+.++|||+++||+||+|+||+|+||+...+ |....+++++.
T Consensus 517 ~~~~Pm~-~LLe~i~~~~t~r-i~~----lst~~~A~~~~t~lpv~~lDslt~~skmsli~~~~~~l~sf~tv~l~~aq~ 590 (1517)
T KOG1883|consen 517 KFIVPMG-QLLESISSNGTKR-IPE----LSTKRMAVNSFTALPVEFLDSLTVHSKMSLIHQCFQPLRSFSTVRLKSAQV 590 (1517)
T ss_pred ccCCcHH-HHHHHHhcCCccc-cCC----CCcceeeecccchhhHHHHHHHHHHHHHHHHHhcccccceeEEEEeccccc
Confidence 5588985 8999999999998 663 57789999999999999999999999999999999887 99999999999
Q ss_pred HHHHHHhhhccccchhhhhhhhhhhccchhhh-------------ccchhhHHHHHHhccccccccccCCchhhHHHHHH
Q 000514 739 VETYTRLMLLAPHSLFRSLFSHLAQRNPSLLA-------------KVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITK 805 (1450)
Q Consensus 739 VETYsRLLvyte~sL~iK~F~~LsQ~lpsV~k-------------a~giLhtLLEilSYRL~p~YRyqlks~~llhsL~~ 805 (1450)
.||.+..+.+.++++.+++++..++++-.+-- +++.|++|.+++-||+..| .| .+.++++....+
T Consensus 591 ~~~va~~~~s~~~~~~~~~le~~arllv~~ei~sl~isg~~~~~~~~~~~~Flsqllptv~~~h-ay-~~l~tl~~~~sy 668 (1517)
T KOG1883|consen 591 KETVAKACESEDYEMAVALLETYARLLVYVEIESLGISGEHQNVQAKDQCYFLSQLLPTVFKHH-AY-SKLHTLVEMFSY 668 (1517)
T ss_pred chhhhhccccchhhhhhcccchhhhhheeeeeeccccCchhhhhhhHHhhhHHHHHHHHHHHHH-HH-HHHHHHHHHHHH
Confidence 99999999999999999999988888755411 7789999999999999763 46 555666666678
Q ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhh
Q 000514 806 IISALKVKRGDHRVLRLAENLCMNLILSQ 834 (1450)
Q Consensus 806 iis~l~nq~qnH~llrllEs~~LrLIl~l 834 (1450)
-..++.+..+.|+++++.|.+.++++.+.
T Consensus 669 r~hhiq~~~r~~ll~~l~~~~lvp~~~~~ 697 (1517)
T KOG1883|consen 669 RTHHIQNHYRVQLLSRLHELFLVPQTNWA 697 (1517)
T ss_pred HHhcCCchHHHHHHHHHHHHHhhHHHHhh
Confidence 88888887778999999999999988543
No 4
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=32.73 E-value=37 Score=25.71 Aligned_cols=18 Identities=22% Similarity=0.556 Sum_probs=15.7
Q ss_pred cHHHHHHHHHHHhhcCCC
Q 000514 429 DWERAMRCIRHAIRATPS 446 (1450)
Q Consensus 429 ~~e~a~rc~~~~~r~~~s 446 (1450)
+|++|++|++.|++-.|.
T Consensus 16 ~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 16 NYEEAIEYFEKALELDPN 33 (34)
T ss_dssp -HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHHCcC
Confidence 799999999999998874
No 5
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=30.81 E-value=26 Score=41.32 Aligned_cols=52 Identities=29% Similarity=0.422 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcCC------------CcccchHHHhhccccccccCCChhHHHH---HHHHHh
Q 000514 301 DKALIEWLHSCLDVIWLLVDED------------RCRVPFYELLRTGLQFIENIPDDEALFT---LILEIH 356 (1450)
Q Consensus 301 ~~~~~~w~~~cl~viw~lv~e~------------~~rvpfy~ll~~~~q~~e~~pddeal~~---l~~e~h 356 (1450)
.++|..||+.||-- ..|. .+--|.|.+++.=.+-++++||.|++-+ +...||
T Consensus 244 V~aLn~WL~~~l~~----~~~~~~~~~~~~sp~~~~aPpIf~lC~~W~~aLd~lp~k~v~~AIk~f~~~v~ 310 (312)
T PF04782_consen 244 VKALNGWLKLCLMQ----EPEETSDGRPPSSPRRSGAPPIFVLCNDWSQALDRLPDKEVSEAIKSFAAVVH 310 (312)
T ss_pred HHHHHHHHHHhccc----cccccccCCCCCCccccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Confidence 47889999999833 2221 2345889999999999999999987654 344444
No 6
>COG0781 NusB Transcription termination factor [Transcription]
Probab=28.09 E-value=19 Score=38.36 Aligned_cols=84 Identities=17% Similarity=0.222 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHhccccccccCCCCCCcccccccCCCCCCCCCCCCCCCCCCccCcccccCCCCcchhhhhhhccchh
Q 000514 1214 PPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIE 1293 (1450)
Q Consensus 1214 Pd~~Yy~~Ll~RLVnnvl~~~~~~~~s~~~~~as~r~~~t~f~a~s~~~P~~fs~~DWRF~EfpNPga~alyvL~tACIE 1293 (1450)
.+..||..|+.+++.|. .. .|.... + -..+|.|.+++ +---|++ -.|+-|
T Consensus 53 ~~~~~~~~lv~gv~~~~-~~----------iD~~I~-~---------------~L~~w~~~rL~-~verAIL--Rla~yE 102 (151)
T COG0781 53 ADSEYFRSLVKGVLENQ-EE----------LDELIS-P---------------HLKKWSLERLD-LVERAIL--RLALYE 102 (151)
T ss_pred hhHHHHHHHHHHHHHHH-HH----------HHHHHH-H---------------HHccCCHHHhh-HHHHHHH--HHHHHH
Confidence 78999999999998766 11 222211 0 01459999999 7777755 499999
Q ss_pred hccCC-CCHHHHHHHHHHHhhccCCccccCCCCCccccccc
Q 000514 1294 ILSLP-VSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSV 1333 (1450)
Q Consensus 1294 LMaLP-v~p~~Vv~aLIDVV~~~~s~~p~~~~~~~~~iNaI 1333 (1450)
++..+ +|...++|--|.++= .++ .+..+..+|+|
T Consensus 103 l~~~~dvP~~VvInEaielaK-~f~-----~e~s~kFINgV 137 (151)
T COG0781 103 LLFRDDVPYKVVINEAIELAK-KFS-----GEDSHKFVNGV 137 (151)
T ss_pred HHhcCCCCCcchHHHHHHHHH-HhC-----CCCchHHHHHH
Confidence 99999 999999999999864 433 55668888875
No 7
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=25.11 E-value=62 Score=24.86 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=15.8
Q ss_pred cHHHHHHHHHHHhhcCCC
Q 000514 429 DWERAMRCIRHAIRATPS 446 (1450)
Q Consensus 429 ~~e~a~rc~~~~~r~~~s 446 (1450)
+|++|+.|.+.||+..|.
T Consensus 16 ~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 16 DYEEALEYYQRALELDPD 33 (34)
T ss_dssp -HHHHHHHHHHHHHHSTT
T ss_pred CchHHHHHHHHHHHHCcC
Confidence 799999999999998885
No 8
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=24.73 E-value=56 Score=33.15 Aligned_cols=41 Identities=29% Similarity=0.616 Sum_probs=32.0
Q ss_pred cCCChhHHhHHHHHHHhhhhhhcCCCCcch----hHHHHHHHHhhhcc
Q 000514 88 QFPDQDQLRSVTESVLISMVVQCCSHVPRA----EFILFALRSLCSIG 131 (1450)
Q Consensus 88 qf~~~~ql~~~te~~~~~~~~qc~~h~p~~----~fll~~~~~l~~~~ 131 (1450)
....||++|...- |.++++||+.-++. ||-+||+|-||.-.
T Consensus 17 ~~~~Qd~vr~~~G---i~liL~~c~iD~~nP~irEwai~aiRnL~e~n 61 (102)
T PF09759_consen 17 NKEVQDLVRELGG---IPLILSCCNIDDHNPFIREWAIFAIRNLCEGN 61 (102)
T ss_pred CHHHHHHHHHcCC---hHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC
Confidence 4456788776554 89999999988775 67799999999754
No 9
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=24.51 E-value=58 Score=29.35 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=20.4
Q ss_pred cccHHHHHHHHHhhhccCCccccc
Q 000514 518 CIDFVDFVDKLVSRLQDGDNHILR 541 (1450)
Q Consensus 518 ~~d~~~fi~~l~~r~~~gd~~~~~ 541 (1450)
.-|+++|||+|-.|..+..+.|+.
T Consensus 23 v~eLe~YiD~LL~rVmE~~P~ILe 46 (48)
T PF09457_consen 23 VRELEDYIDNLLVRVMEQTPSILE 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHCC-GGGGB
T ss_pred HHHHHHHHHHHHHHHHHhCcchhc
Confidence 458999999999999999998875
No 10
>PF01029 NusB: NusB family; InterPro: IPR006027 This domain is found in a number of functionally different proteins: NusB a prokaryotic transcription factor involved in antitermination TIM44, the mitochondrial inner membrane translocase subunit RsmB, the 16S rRNA m5C967 methyltransferase NusB is a prokaryotic transcription factor involved in antitermination processes, during which it interacts with the boxA portion of the mRNA nut site. Previous studies have shown that NusB exhibits an all-helical fold, and that the protein from Escherichia coli forms monomers, while Mycobacterium tuberculosis NusB is a dimer. The functional significance of NusB dimerization is unknown. An N-terminal arginine-rich sequence is the probable RNA binding site, exhibiting aromatic residues as potential stacking partners for the RNA bases. The RNA binding region is hidden in the subunit interface of dimeric NusB proteins, such as NusB from M. tuberculosis, suggesting that such dimers have to undergo a considerable conformational change or dissociate for engagement with RNA. In certain organisms, dimerization may be employed to package NusB in an inactive form until recruitment into antitermination complexes [, ]. The antitermination proteins of E. coli are recruited in the replication cycle of Bacteriophage lambda, where they play an important role in switching from the lysogenic to the lytic cycle.; GO: 0003723 RNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1SQG_A 1SQF_A 3IMQ_A 3D3C_C 3D3B_A 1EY1_A 1EYV_A 1TZV_A 1TZT_B 1TZX_B ....
Probab=23.33 E-value=28 Score=34.89 Aligned_cols=85 Identities=19% Similarity=0.239 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHhccccccccCCCCCCcccccccCCCCCCCCCCCCCCCCCCccCcccccCCCCcchhhhhhhccch
Q 000514 1213 CPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVI 1292 (1450)
Q Consensus 1213 ~Pd~~Yy~~Ll~RLVnnvl~~~~~~~~s~~~~~as~r~~~t~f~a~s~~~P~~fs~~DWRF~EfpNPga~alyvL~tACI 1292 (1450)
..+..|+.+|+.+.+.+. .. .|.-. .+ . ..+|++..++ |-..+ +|.+|+-
T Consensus 43 ~~d~~~~~~lv~gv~~~~-~~----------ld~~i----~~-~-----------~~~~~~~rl~-~~~~~--iLrla~~ 92 (134)
T PF01029_consen 43 EEDRAFARELVYGVLRNK-EE----------LDALI----SK-L-----------LKNWPLERLP-PVDRA--ILRLAIY 92 (134)
T ss_dssp HHHHHHHHHHHHHHHHTH-HH----------HHHHH----HH-T-----------STSSTGGGSG-HHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HH----------HHHHH----HH-H-----------hccCCccccC-HHHHH--HHHHHHH
Confidence 367788888988886544 11 22211 11 0 1689999988 56655 4559999
Q ss_pred hhccC-CCCHHHHHHHHHHHhhccCCccccCCCCCccccccc
Q 000514 1293 EILSL-PVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSV 1333 (1450)
Q Consensus 1293 ELMaL-Pv~p~~Vv~aLIDVV~~~~s~~p~~~~~~~~~iNaI 1333 (1450)
|++-+ .+||..++|.-|+++-+-- .....+.+|||
T Consensus 93 El~~~~~~p~~v~InEaVelak~~~------~~~~~~fVNaV 128 (134)
T PF01029_consen 93 ELLFLDDIPPHVAINEAVELAKKYG------DEKSAGFVNAV 128 (134)
T ss_dssp HHHHSTTSHHHHHHHHHHHHHHHHS-------TTHHHHHHHH
T ss_pred HHHhcCCCCccchHHHHHHHHHHhC------CCCcchhHHHH
Confidence 99999 8999999999999987763 34446777765
No 11
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=22.16 E-value=83 Score=21.19 Aligned_cols=18 Identities=22% Similarity=0.560 Sum_probs=15.4
Q ss_pred cHHHHHHHHHHHhhcCCC
Q 000514 429 DWERAMRCIRHAIRATPS 446 (1450)
Q Consensus 429 ~~e~a~rc~~~~~r~~~s 446 (1450)
++++|..|++.+++..|+
T Consensus 16 ~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 16 DYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHccCCC
Confidence 589999999999987764
No 12
>PRK09634 nusB transcription antitermination protein NusB; Provisional
Probab=21.52 E-value=55 Score=36.80 Aligned_cols=85 Identities=18% Similarity=0.127 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHhccccccccCCCCCCcccccccCCCCCCCCCCCCCCCCCCccCcccccCCCCcchhhhhhhccch
Q 000514 1213 CPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVI 1292 (1450)
Q Consensus 1213 ~Pd~~Yy~~Ll~RLVnnvl~~~~~~~~s~~~~~as~r~~~t~f~a~s~~~P~~fs~~DWRF~EfpNPga~alyvL~tACI 1292 (1450)
..+..|..+|+.+.+.+. .. .|.-. .+ ..++|++.-++ +--.+ +|..|+.
T Consensus 110 ~~~r~~a~~Lv~gvlr~~-~~----------LD~iI----~~------------~l~~W~l~rL~-~idr~--ILRlavy 159 (207)
T PRK09634 110 EEVREYALERIGAVIRNR-KE----------IDQLL----DT------------VMVGWQLKRLP-RIDRD--ILRLAVV 159 (207)
T ss_pred HHHHHHHHHHHHHHHHhH-HH----------HHHHH----HH------------HhccccccCCC-HHHHH--HHHHHHH
Confidence 477889999988886444 11 12211 10 11689888877 33344 5669999
Q ss_pred hhccCCCCHHHHHHHHHHHhhccCCccccCCCCCccccccc
Q 000514 1293 EILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSV 1333 (1450)
Q Consensus 1293 ELMaLPv~p~~Vv~aLIDVV~~~~s~~p~~~~~~~~~iNaI 1333 (1450)
|++-+.+|+..++|--|+++ |.+. ..+.++.+|||
T Consensus 160 ELl~l~~P~~vaINEAVeLA-K~~~-----~~~~~~FVNaV 194 (207)
T PRK09634 160 EILFLNTPAAVAINEAVELA-KRYS-----DEQGRRFINGV 194 (207)
T ss_pred HHHhcCCCchhHHHHHHHHH-HHhC-----CCcccchHHHH
Confidence 99999999999999999999 5553 33457788876
No 13
>PF10349 WWbp: WW-domain ligand protein; InterPro: IPR018826 This entry represents a sequence domain found in WW domain-binding protein that is characterised by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis []. This domain lies just downstream of IPR004182 from INTERPRO in many sequences.
Probab=20.10 E-value=51 Score=33.75 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.2
Q ss_pred HHhcccccHHHHHHHHHhhhccCCc
Q 000514 513 LVKSGCIDFVDFVDKLVSRLQDGDN 537 (1450)
Q Consensus 513 l~~~g~~d~~~fi~~l~~r~~~gd~ 537 (1450)
|-++|||||-+-..||++|+..+..
T Consensus 15 Fk~GGAieFgq~~~~~~~~a~r~~~ 39 (116)
T PF10349_consen 15 FKSGGAIEFGQAMLRLAERASRAVP 39 (116)
T ss_pred eCCCChHHHHHHHHHHHHHHhhccc
Confidence 5689999999999999999988865
Done!