Query 000514
Match_columns 1450
No_of_seqs 54 out of 56
Neff 3.2
Searched_HMMs 13730
Date Tue Mar 26 17:54:35 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000514.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_286-290//hhsearch_scop/000514hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ey1a_ a.79.1.1 (A:) Antiterm 14.7 21 0.0015 11.0 4.0 115 1181-1333 11-126 (139)
2 d1tuza_ a.39.1.7 (A:) Diacylgl 8.2 38 0.0027 9.3 1.8 13 517-529 92-104 (118)
3 d1dvpa1 a.118.9.2 (A:1-145) Hr 7.1 45 0.0033 8.8 1.3 13 771-783 22-34 (145)
4 d1tzva_ a.79.1.1 (A:) Antiterm 5.7 60 0.0043 8.0 0.8 116 1181-1333 10-126 (141)
5 d1wrka1 a.39.1.5 (A:4-85) Trop 5.3 66 0.0048 7.7 1.7 10 517-526 67-76 (82)
6 d1v8da_ c.140.1.1 (A:) Hypothe 4.0 74 0.0054 7.4 -0.5 18 100-117 62-79 (193)
7 d1eyva_ a.79.1.1 (A:) Antiterm 3.9 97 0.0071 6.6 1.3 84 1214-1333 42-126 (131)
8 d1om2a_ a.23.4.1 (A:) Mitochon 3.7 1E+02 0.0076 6.4 1.8 14 858-871 39-52 (95)
9 d1g7oa1 a.45.1.1 (A:76-215) Gl 3.5 1.1E+02 0.0078 6.3 5.5 73 74-149 50-129 (140)
10 d1nxha_ a.200.1.1 (A:) Hypothe 3.4 1.1E+02 0.0082 6.1 0.3 13 780-792 6-18 (124)
No 1
>d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli [TaxId: 562]}
Probab=14.66 E-value=21 Score=11.02 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=66.7
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79999983125898888930001003999988999779999999997411564446898888666666688899988778
Q 000514 1181 KLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQ 1260 (1450)
Q Consensus 1181 kLV~~ILg~Ld~~r~~LSEsF~~y~~~~~~~w~Pd~~Yy~~LI~RLVnnvl~~~~~~~~s~~~~~as~r~~~t~f~a~s~ 1260 (1450)
.++..++-+.+.....+.+....+..+.+ .-..|..|+..|+.+...+.. . .|... .+
T Consensus 11 ~~a~q~Ly~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~l~~gv~~~~~-~----------id~~I----~~------ 68 (139)
T d1ey1a_ 11 ECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNTA-Y----------LDGLM----KP------ 68 (139)
T ss_dssp HHHHHHHHHHHHHCCCSHHHHHHHHHTTT-SSSCCCHHHHHHHHHHHHHHH-H----------HHHHH----TT------
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH-H----------HHHHH----HH------
T ss_conf 99999999998369999999999988345-431458999999999998378-8----------99999----99------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999886684443479973036554300000011589-89899999998786604874335789986555435
Q 000514 1261 SGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLP-VSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSV 1333 (1450)
Q Consensus 1261 ~~P~~fs~~DWRF~EfpNPgs~allvL~tACIELMaLP-vsp~~Vv~aLIDVV~~~~s~~p~~~~~~~~~iNaI 1333 (1450)
+ .+|.+...+ +--.++ |..|+-|++-++ +|+..+++.-|+++-.-- ....++-+|||
T Consensus 69 -----~--l~~~~~r~~-~~~~~I--Lr~a~~El~~~~~~p~~viInE~Velak~~~------~~~~~~fVNgV 126 (139)
T d1ey1a_ 69 -----Y--LSRLLEELG-QVEKAV--LRIALYELSKRSDVPYKVAINEAIELAKSFG------AEDSHKFVNGV 126 (139)
T ss_dssp -----C--CCSCTTTSC-HHHHHH--HHHHHHHHHSCSSCCSHHHHHHHHHHTTTTT------CSSSSHHHHHH
T ss_pred -----H--HHHHHHHCC-HHHHHH--HHHHHHHHHHCCCCCCEEHHHHHHHHHHHHC------CCCCCCHHHHH
T ss_conf -----8--886487537-678999--9999999997137776125999999999968------98743117999
No 2
>d1tuza_ a.39.1.7 (A:) Diacylglycerol kinase alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.15 E-value=38 Score=9.33 Aligned_cols=13 Identities=8% Similarity=-0.016 Sum_probs=7.3
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 4542999999998
Q 000514 517 GCIDFVDFVDKLV 529 (1450)
Q Consensus 517 g~~d~~~fi~~l~ 529 (1450)
|.|||.|||..|+
T Consensus 92 g~I~f~efv~~LS 104 (118)
T d1tuza_ 92 DVVCLNDVSCYFS 104 (118)
T ss_dssp CCEEHHHHHHHHH
T ss_pred CEEEHHHHHHHHH
T ss_conf 6461999999999
No 3
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=7.11 E-value=45 Score=8.82 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=6.4
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 0351368999873
Q 000514 771 KVGVTPLVLEIVN 783 (1450)
Q Consensus 771 a~giLhtLLEilS 783 (1450)
.|+...-++|+++
T Consensus 22 dw~~il~icD~I~ 34 (145)
T d1dvpa1 22 DWPSILLICDEIN 34 (145)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 9999999999995
No 4
>d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga maritima [TaxId: 2336]}
Probab=5.71 E-value=60 Score=8.00 Aligned_cols=116 Identities=10% Similarity=0.069 Sum_probs=60.7
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79999983125898888930001003999988999779999999997411564446898888666666688899988778
Q 000514 1181 KLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQ 1260 (1450)
Q Consensus 1181 kLV~~ILg~Ld~~r~~LSEsF~~y~~~~~~~w~Pd~~Yy~~LI~RLVnnvl~~~~~~~~s~~~~~as~r~~~t~f~a~s~ 1260 (1450)
.++..+|=+.+..+....+.+.+.....+ ....+..|+.+|+.+...+.- . .|... .+
T Consensus 10 ~~a~q~Ly~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~lv~g~~~~~~-~----------id~~I----~~------ 67 (141)
T d1tzva_ 10 LAVFKALFQHEFRRDEDLEQILEEILDET-YDKKAKEDARRYIRGIKENLS-M----------IDDLI----SR------ 67 (141)
T ss_dssp HHHHHHHHHHTTCTTSCHHHHHHHHCCTT-SCHHHHHHHHHHHHHHHHTHH-H----------HHHHH----HT------
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHH-H----------HHHHH----HH------
T ss_conf 99999999998449962999999998841-366679999999999998099-9----------99999----98------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999886684443479973036554300000011589-89899999998786604874335789986555435
Q 000514 1261 SGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLP-VSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSV 1333 (1450)
Q Consensus 1261 ~~P~~fs~~DWRF~EfpNPgs~allvL~tACIELMaLP-vsp~~Vv~aLIDVV~~~~s~~p~~~~~~~~~iNaI 1333 (1450)
+. .+|.+...+ +--.++ |..|+.|++-.+ +|+..+++--|+++-.-- ....++.+|||
T Consensus 68 -----~~-~~~~~~rl~-~~~~~i--Lr~a~~El~~~~~~p~~v~InEaVelak~~~------~~~~~~fVNaV 126 (141)
T d1tzva_ 68 -----YL-EKWSLNRLS-VVDRNV--LRLATYELLFEKDIPIEVTIDEAIEIAKRYG------TENSGKFVNGI 126 (141)
T ss_dssp -----TC-SSSCGGGSC-HHHHHH--HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHS------CHHHHHHHHHH
T ss_pred -----HC-CCCCHHHHH-HHHHHH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC------CCCCCCHHHHH
T ss_conf -----52-158738888-899999--9999999985333303589999999999858------88632118999
No 5
>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=5.27 E-value=66 Score=7.71 Aligned_cols=10 Identities=40% Similarity=0.886 Sum_probs=3.4
Q ss_pred CCCCHHHHHH
Q ss_conf 4542999999
Q 000514 517 GCIDFVDFVD 526 (1450)
Q Consensus 517 g~~d~~~fi~ 526 (1450)
|+|||.+|+.
T Consensus 67 G~I~f~eFl~ 76 (82)
T d1wrka1 67 GTVDFDEFLV 76 (82)
T ss_dssp SSBCHHHHHH
T ss_pred CEEEHHHHHH
T ss_conf 7473999999
No 6
>d1v8da_ c.140.1.1 (A:) Hypothetical protein TT1679 {Thermus thermophilus [TaxId: 274]}
Probab=4.02 E-value=74 Score=7.37 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=9.7
Q ss_pred HHHHHHHHHHCCCCCCCH
Q ss_conf 998765432237888612
Q 000514 100 ESVLISMVVQCCSHVPRA 117 (1450)
Q Consensus 100 e~~~~~~~~qc~~h~p~~ 117 (1450)
+.-=|.|.+|||-|--||
T Consensus 62 ~~~gi~lA~Q~CEHlNRA 79 (193)
T d1v8da_ 62 LERGVHVAVQACEHLNRA 79 (193)
T ss_dssp HTTTCEEEEECCGGGTTC
T ss_pred HHCCEEEEEECHHHHHHH
T ss_conf 751808987345565788
No 7
>d1eyva_ a.79.1.1 (A:) Antitermination factor NusB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.86 E-value=97 Score=6.58 Aligned_cols=84 Identities=18% Similarity=0.192 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHH
Q ss_conf 99779999999997411564446898888666666688899988778999998866844434799730365543000000
Q 000514 1214 PPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIE 1293 (1450)
Q Consensus 1214 Pd~~Yy~~LI~RLVnnvl~~~~~~~~s~~~~~as~r~~~t~f~a~s~~~P~~fs~~DWRF~EfpNPgs~allvL~tACIE 1293 (1450)
.+..|+.+|+.+.+.|. +. .|... +. +. .+|.+..+. |--.+++ ..|.-|
T Consensus 42 ~~~~~~~~l~~gv~~~~-~~----------id~~I----~~-----------~l-~~~~~~~l~-~i~~~iL--r~a~~E 91 (131)
T d1eyva_ 42 RLHPYTAAVARGVSEHA-AH----------IDDLI----TA-----------HL-RGWTLDRLP-AVDRAIL--RVSVWE 91 (131)
T ss_dssp CCCHHHHHHHHHHHHTH-HH----------HHHHH----HT-----------TS-TTCCGGGSC-HHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HH----------HHHHH----HH-----------HH-HHHHHHHHH-HHHHHHH--HHHHHH
T ss_conf 89999999999999959-99----------99999----98-----------60-124787753-9999999--999999
Q ss_pred HCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11589-89899999998786604874335789986555435
Q 000514 1294 ILSLP-VSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSV 1333 (1450)
Q Consensus 1294 LMaLP-vsp~~Vv~aLIDVV~~~~s~~p~~~~~~~~~iNaI 1333 (1450)
++-.+ +|...+++.-|+++-.-- .....+.+|||
T Consensus 92 l~~~~~~p~~viInE~V~lak~~~------~~~~~kfiNaV 126 (131)
T d1eyva_ 92 LLHAADVPEPVVVDEAVQLAKELS------TDDSPGFVNGV 126 (131)
T ss_dssp HHHCTTSCHHHHHHHHHHHHHHHS------CTTHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHC------CCCCCCHHHHH
T ss_conf 986456995157899999999968------98643236998
No 8
>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.65 E-value=1e+02 Score=6.39 Aligned_cols=14 Identities=29% Similarity=0.116 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 99999999876155
Q 000514 858 TVIALAIIIKTRGI 871 (1450)
Q Consensus 858 LILTLARsIKitGi 871 (1450)
-+.-|++++.+.|+
T Consensus 39 g~~h~~nAi~Vc~q 52 (95)
T d1om2a_ 39 GVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999998278
No 9
>d1g7oa1 a.45.1.1 (A:76-215) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}
Probab=3.54 E-value=1.1e+02 Score=6.28 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH---HHHH---CCCCCCCHHHHHHH-HHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 86023212999860099946776777998765---4322---37888612479999-99864205434310178896554
Q 000514 74 RNEQFLIDFEQLQSQFPDQDQLRSVTESVLIS---MVVQ---CCSHVPRAEFILFA-LRSLCSIGYINWDTFLPSLLSSV 146 (1450)
Q Consensus 74 ~~eqf~~df~~l~~qf~~~~ql~~~te~~~~~---~~~q---c~~h~p~~~fll~~-~~~l~~~~~~~wd~~l~~ll~~~ 146 (1450)
|.|+++.||+++..+-+ |+-.--|..|-- ++.. +.+.---.|+++|. ||+|+..--|.|++=+-..+..+
T Consensus 50 kKe~~~g~f~~~l~~t~---~li~~l~~~L~~L~~ll~~~~~~~~~ls~DDi~lFp~LR~ltivkgi~~p~~v~~Y~~~~ 126 (140)
T d1g7oa1 50 KKEASAGNFADLLAHSD---GLIKNISDDLRALDKLIVKPNAVNGELSEDDIQLFPLLRNLTLVAGINWPSRVADYRDNM 126 (140)
T ss_dssp TTTTTCTHHHHHHHHHH---HHHHHHHHHHHHHHHHCSSSSCTTSSCCHHHHHHHHHHHHHHTSTTSCCCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHCCH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 66641179999987579---999999999999999982735558876699999999986457516787888899999999
Q ss_pred HHH
Q ss_conf 320
Q 000514 147 SSA 149 (1450)
Q Consensus 147 ~~~ 149 (1450)
|..
T Consensus 127 s~~ 129 (140)
T d1g7oa1 127 AKQ 129 (140)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 998
No 10
>d1nxha_ a.200.1.1 (A:) Hypothetical protein MTH393 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=3.40 E-value=1.1e+02 Score=6.14 Aligned_cols=13 Identities=31% Similarity=0.751 Sum_probs=4.6
Q ss_pred HHHHCCCCCCCCC
Q ss_conf 9873035521003
Q 000514 780 EIVNYRLLPLYRY 792 (1450)
Q Consensus 780 EilSYRL~p~YRy 792 (1450)
-++-||+..-|||
T Consensus 6 ~lmK~~ii~~~R~ 18 (124)
T d1nxha_ 6 RLMKRRILESYRW 18 (124)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHCCCHH
T ss_conf 9999987602205
Done!