BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000515
(1450 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T5V|A Chain A, Sac3:thp1:sem1 Complex
pdb|3T5V|D Chain D, Sac3:thp1:sem1 Complex
Length = 316
Score = 77.0 bits (188), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 110/235 (46%), Gaps = 26/235 (11%)
Query: 312 IRPMPILQKTVGYLLD--LLDQPYDERFLGLYNFLWDRMRAIRMDLRMQHIFNQEAITML 369
+RP IL KT+ Y++D L P E FLWDRMR+IR D Q+ EA+
Sbjct: 8 VRPPHILVKTLDYIVDNLLTTLPESE------GFLWDRMRSIRQDFTYQNYSGPEAVDCN 61
Query: 370 EQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKRGLIISTE 429
E+++R+H++ +H + + + F +EQ++K+ + L ++YDD R G E
Sbjct: 62 ERIVRIHLLILHIMVKS------NVEFSLQQELEQLHKSLITLSEIYDDVRSSGGTCPNE 115
Query: 430 KEFRGYYALLKLDKHPGY----KVEPAELSLD-LAKMTPEIRQ--TPEVLFARSVARACR 482
EFR YALL + P Y + P + D L +M R+ + R +
Sbjct: 116 AEFRA-YALLSKIRDPQYDENIQRLPKHIFQDKLVQMALCFRRVISNSAYTERGFVKTEN 174
Query: 483 TGNFIA-FFRLARKAS--YLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHV 534
NF A FF+L + S L + H + +R AL +L L N + P+ +
Sbjct: 175 CLNFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTL-NKKHKPIPFI 228
>pdb|1I3S|A Chain A, The 2.7 Angstrom Resolution Crystal Structure Of A Mutated
Baculovirus P35 After Caspase Cleavage
pdb|1I3S|B Chain B, The 2.7 Angstrom Resolution Crystal Structure Of A Mutated
Baculovirus P35 After Caspase Cleavage
pdb|1I3S|C Chain C, The 2.7 Angstrom Resolution Crystal Structure Of A Mutated
Baculovirus P35 After Caspase Cleavage
Length = 298
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 494 RKASYLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGMEEEDIESLLEYHG 553
R Y+ C++ F Q L+ Y+ + N +P AH G+ E D+ + ++
Sbjct: 144 RNDYYVAVCVLKPGFENGSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVVAYVDSVQ 203
Query: 554 FSIKEFEE--PYMVKEGPFLNSDK 575
F ++FEE ++ F NS+K
Sbjct: 204 FDGEQFEEFVQSLILPSSFKNSEK 227
>pdb|1I4E|A Chain A, Crystal Structure Of The Caspase-8P35 COMPLEX
Length = 299
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 494 RKASYLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGMEEEDIESLLEYHG 553
R Y+ C++ F Q L+ Y+ + N +P AH G+ E D+ + ++
Sbjct: 145 RNDYYVAVCVLKPGFENGSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVVAYVDSVQ 204
Query: 554 FSIKEFEE--PYMVKEGPFLNSDK 575
F ++FEE ++ F NS+K
Sbjct: 205 FDGEQFEEFVQSLILPSSFKNSEK 228
>pdb|2FUN|A Chain A, Alternative P35-Caspase-8 Complex
pdb|2FUN|C Chain C, Alternative P35-Caspase-8 Complex
Length = 298
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 494 RKASYLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGMEEEDIESLLEYHG 553
R Y+ C++ F Q L+ Y+ + N +P AH G+ E D+ + ++
Sbjct: 144 RNDYYVAVCVLKPGFENGSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVVAYVDSVQ 203
Query: 554 FSIKEFEE--PYMVKEGPFLNSDK 575
F ++FEE ++ F NS+K
Sbjct: 204 FDGEQFEEFVQSLILPSSFKNSEK 227
>pdb|1P35|A Chain A, Crystal Structure Of Baculovirus P35
pdb|1P35|B Chain B, Crystal Structure Of Baculovirus P35
pdb|1P35|C Chain C, Crystal Structure Of Baculovirus P35
Length = 299
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 494 RKASYLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGMEEEDIESLLEYHG 553
R Y+ C++ F Q L+ Y+ + N +P AH G+ E D+ + ++
Sbjct: 144 RNDYYVAVCVLKPGFENGSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVVAYVDSVQ 203
Query: 554 FSIKEFEE--PYMVKEGPFLNSDK 575
F ++FEE ++ F NS+K
Sbjct: 204 FDGEQFEEFVQSLILPSSFKNSEK 227
>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
pdb|2VCY|B Chain B, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
Length = 344
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 210 QKVSNSGRGQSVVERQKFVGGHSIESAKDYPNENTLSDN-EGLEASSVI 257
Q SNSG GQ+V++ +G +I +D P+ LSD + L A VI
Sbjct: 160 QNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVI 208
>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester
Reductase (Cgi- 63)
Length = 357
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 210 QKVSNSGRGQSVVERQKFVGGHSIESAKDYPNENTLSDN-EGLEASSVI 257
Q SNSG GQ+V++ +G +I +D P+ LSD + L A VI
Sbjct: 173 QNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVI 221
>pdb|1I3P|A Chain A, The 3.1 Angstrom Resolution Crystal Structure Of A Mutated
Baculovirus P35 After Caspase Cleavage
Length = 298
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 494 RKASYLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGMEEEDIESLLEYHG 553
R Y+ C++ F Q L+ Y+ + N +P AH G+ E D+ + ++
Sbjct: 144 RNDYYVAVCVLKPGFENGSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVVAYVDSVQ 203
Query: 554 FSIKEFEE--PYMVKEGPFLNSDK 575
F ++FEE ++ F NS+K
Sbjct: 204 FDGEQFEEFVQSLILPSSFKNSEK 227
>pdb|2EGI|A Chain A, Crystal Structure Of A Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
pdb|2EGI|C Chain C, Crystal Structure Of A Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
pdb|2EGI|D Chain D, Crystal Structure Of A Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
pdb|2EGI|E Chain E, Crystal Structure Of A Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
pdb|2EGI|F Chain F, Crystal Structure Of A Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
pdb|2EGI|G Chain G, Crystal Structure Of A Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
pdb|2EGI|H Chain H, Crystal Structure Of A Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
pdb|2EGI|I Chain I, Crystal Structure Of A Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
pdb|2EGJ|A Chain A, Crystal Structure Of Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
pdb|2EGJ|B Chain B, Crystal Structure Of Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
pdb|2EGR|A Chain A, Crystal Structure Of Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
pdb|2EGR|B Chain B, Crystal Structure Of Hypothetical Protein(Aq1494) From
Aquifex Aeolicus
Length = 128
Score = 30.8 bits (68), Expect = 5.9, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 375 LHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNK 407
L ++ ++ CEY K + + F+ HLN+E++++
Sbjct: 52 LEVVLLNAYCEYKKPLFYDDVFEVHLNLEELSR 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,190,761
Number of Sequences: 62578
Number of extensions: 1679137
Number of successful extensions: 3570
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3555
Number of HSP's gapped (non-prelim): 15
length of query: 1450
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1339
effective length of database: 8,027,179
effective search space: 10748392681
effective search space used: 10748392681
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)