Query 000515
Match_columns 1450
No_of_seqs 227 out of 509
Neff 4.1
Searched_HMMs 46136
Date Mon Apr 1 17:34:03 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1860 Nuclear protein export 100.0 3E-96 6E-101 884.7 29.2 868 137-1098 11-927 (927)
2 COG5079 SAC3 Nuclear protein e 100.0 2E-65 4.3E-70 585.5 23.3 374 182-603 25-425 (646)
3 KOG1861 Leucine permease trans 100.0 2.1E-43 4.5E-48 403.7 22.8 296 168-567 221-518 (540)
4 PF03399 SAC3_GANP: SAC3/GANP/ 100.0 1.5E-41 3.3E-46 357.4 21.2 200 307-540 3-204 (204)
5 PF10075 PCI_Csn8: COP9 signal 98.3 6.4E-06 1.4E-10 84.6 11.5 124 429-560 3-129 (143)
6 KOG3151 26S proteasome regulat 97.4 0.0053 1.1E-07 68.7 17.0 166 364-557 54-222 (260)
7 PF00025 Arf: ADP-ribosylation 95.4 0.045 9.8E-07 57.9 7.9 96 974-1082 76-173 (175)
8 KOG0075 GTP-binding ADP-ribosy 94.3 0.13 2.9E-06 54.8 7.5 113 960-1086 64-183 (186)
9 PF01399 PCI: PCI domain; Int 93.9 0.36 7.8E-06 46.0 9.2 72 476-550 5-82 (105)
10 cd04161 Arl2l1_Arl13_like Arl2 93.0 0.75 1.6E-05 47.9 10.5 104 974-1082 61-166 (167)
11 smart00178 SAR Sar1p-like memb 91.0 1.6 3.5E-05 46.3 10.4 99 974-1083 79-183 (184)
12 cd04153 Arl5_Arl8 Arl5/Arl8 su 86.3 3.7 8E-05 43.0 9.1 96 974-1083 77-174 (174)
13 KOG0071 GTP-binding ADP-ribosy 85.3 3.1 6.8E-05 44.6 7.8 94 977-1084 82-177 (180)
14 cd04150 Arf1_5_like Arf1-Arf5- 79.4 15 0.00031 38.1 10.1 96 974-1083 62-159 (159)
15 PLN00223 ADP-ribosylation fact 77.9 14 0.0003 39.5 9.7 94 976-1083 81-176 (181)
16 smart00177 ARF ARF-like small 77.8 16 0.00036 38.4 10.1 93 977-1083 78-172 (175)
17 KOG0070 GTP-binding ADP-ribosy 75.9 10 0.00022 42.1 7.9 96 976-1085 81-178 (181)
18 KOG1464 COP9 signalosome, subu 72.2 48 0.001 39.2 12.4 143 398-554 240-390 (440)
19 KOG3252 Uncharacterized conser 69.5 19 0.00041 40.2 8.1 96 461-560 88-184 (217)
20 cd04157 Arl6 Arl6 subfamily. 65.7 35 0.00076 34.5 8.9 95 975-1082 64-161 (162)
21 PTZ00133 ADP-ribosylation fact 63.5 36 0.00078 36.3 8.9 109 961-1083 61-176 (182)
22 cd04160 Arfrp1 Arfrp1 subfamil 62.9 43 0.00093 34.2 9.0 97 975-1083 69-167 (167)
23 cd04155 Arl3 Arl3 subfamily. 62.2 45 0.00098 34.3 9.1 94 975-1082 77-172 (173)
24 smart00753 PAM PCI/PINT associ 60.9 19 0.0004 34.1 5.5 43 505-550 4-46 (88)
25 smart00088 PINT motif in prote 60.9 19 0.0004 34.1 5.5 43 505-550 4-46 (88)
26 KOG4414 COP9 signalosome, subu 60.1 1.8E+02 0.0039 31.9 12.9 97 459-558 63-162 (197)
27 cd04149 Arf6 Arf6 subfamily. 56.0 62 0.0013 34.0 8.9 94 976-1083 73-168 (168)
28 cd00879 Sar1 Sar1 subfamily. 53.6 1.1E+02 0.0025 32.1 10.5 98 974-1082 81-188 (190)
29 cd04158 ARD1 ARD1 subfamily. 52.1 1.1E+02 0.0023 32.0 10.0 103 975-1090 62-166 (169)
30 KOG0687 26S proteasome regulat 51.2 2.2E+02 0.0048 34.8 13.0 146 401-553 156-346 (393)
31 KOG0917 Uncharacterized conser 50.7 2.3E+02 0.0051 33.7 12.8 51 34-84 174-224 (338)
32 cd04154 Arl2 Arl2 subfamily. 50.4 86 0.0019 32.7 8.9 94 976-1083 78-173 (173)
33 cd04159 Arl10_like Arl10-like 50.2 1.3E+02 0.0028 29.7 9.8 95 974-1082 62-158 (159)
34 cd04156 ARLTS1 ARLTS1 subfamil 49.8 1.4E+02 0.003 30.3 10.1 94 976-1082 64-159 (160)
35 KOG0073 GTP-binding ADP-ribosy 47.9 50 0.0011 36.6 6.8 91 979-1083 83-176 (185)
36 cd04152 Arl4_Arl7 Arl4/Arl7 su 33.6 3.3E+02 0.0072 29.0 10.3 109 961-1082 52-167 (183)
37 KOG0077 Vesicle coat complex C 31.7 48 0.001 36.9 3.6 92 980-1081 88-189 (193)
38 cd04162 Arl9_Arfrp2_like Arl9/ 28.6 1.9E+02 0.0041 30.2 7.3 68 975-1045 63-132 (164)
39 cd00878 Arf_Arl Arf (ADP-ribos 28.5 3.7E+02 0.0081 27.2 9.3 94 975-1082 62-157 (158)
40 KOG2908 26S proteasome regulat 26.9 3.8E+02 0.0082 33.0 10.0 84 471-555 234-322 (380)
41 KOG2003 TPR repeat-containing 26.8 4.6E+02 0.01 33.3 10.8 89 398-495 574-685 (840)
42 COG5418 Predicted secreted pro 26.7 44 0.00094 36.2 2.2 25 1134-1158 30-59 (164)
43 COG5187 RPN7 26S proteasome re 22.9 8E+02 0.017 30.0 11.4 71 477-550 276-357 (412)
44 KOG2581 26S proteasome regulat 21.9 1.8E+02 0.0039 36.4 6.3 66 476-544 323-393 (493)
45 cd00877 Ran Ran (Ras-related n 21.6 2.7E+02 0.0058 29.1 6.9 96 974-1090 67-164 (166)
46 cd04151 Arl1 Arl1 subfamily. 21.4 6.5E+02 0.014 25.7 9.5 94 975-1082 62-157 (158)
47 PLN03086 PRLI-interacting fact 21.3 2E+02 0.0044 37.3 6.9 39 790-828 16-59 (567)
48 smart00053 DYNc Dynamin, GTPas 20.4 3.2E+02 0.0069 31.7 7.7 97 1000-1099 11-136 (240)
No 1
>KOG1860 consensus Nuclear protein export factor [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3e-96 Score=884.74 Aligned_cols=868 Identities=24% Similarity=0.292 Sum_probs=652.0
Q ss_pred CCCCCCCCCccccCCCCCccCCCCCCCCCcccccCcCCCchhHHHHHHHHHHHHHhhhhhhccccCCCccccCcccCCCC
Q 000515 137 SSKSAVGATRSNVYPVPKRTRSPPLPSVGQDLQENSNFTQYDAEREMQAKAKRLARFKVELSENVQISPEITDQKVSNSG 216 (1450)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~kR~~rf~~~~~~~~~~~~~i~~~~~~~~~ 216 (1450)
.-.++++..++..+.++|+++.-|-|+..+- +..+ ++-+.+++++|.+||...+.++.. ....
T Consensus 11 ~~~s~nn~~f~~~~~k~~~~~~~~~p~~~~r---~~~~----~~~d~~~~~~r~~~p~~~~~~~~~----------~~~l 73 (927)
T KOG1860|consen 11 IKKSPNNKGFQKKSAKPKGFETTPKPSSSDR---SFGS----SRSDPANMAARVARPSSLLERNAM----------LEPL 73 (927)
T ss_pred cccCCCcccccccccCCCCCCCCCCcccccc---ccCC----CcccccchhccccCcccccchhhh----------hhhh
Confidence 3556777888888889998886666633322 3333 566788999999999996444433 1111
Q ss_pred CCCChHHHhhhhcCCcccCCCCCCCCCcCCCccccccCccccccCCCCCCHHHHHHHHHhCCCCccccccCCCCCcchhh
Q 000515 217 RGQSVVERQKFVGGHSIESAKDYPNENTLSDNEGLEASSVIIGSCPDMCPESERAERERKGDLDRYERLDGDRNQTNEYL 296 (1450)
Q Consensus 217 ~~~~~~eR~k~~~~~l~ds~~d~~~~~~i~d~~~L~~a~~ivGTC~DMCPE~ER~~Re~e~~Ls~fEk~dg~~~~~d~~~ 296 (1450)
......++.-|..+++.| +..+.++++.+..+||||+|||||+||++|+++++||.||+++ +++++++.+
T Consensus 74 ~~~r~~~~~~~~~~~~kd---------~~~~~~~~~~~~~~vGtC~dMCPE~Er~eRe~~~~l~~yE~~p-~~~~~~~~~ 143 (927)
T KOG1860|consen 74 KGKRTFEQFEMERDALKD---------LLPKRENLEPAELFVGTCPDMCPEKERYEREREKDLHPYEVVP-DSKQASPSL 143 (927)
T ss_pred hcccCChHHHHHHhhccc---------ccccccccchhhhhcccchhhCchHHHHHHHHhcCCCeeeecC-CCcccCHHH
Confidence 122223333444555553 3345678999999999999999999999999999999999976 778899999
Q ss_pred hhhhcccCcccc----cccCCCHHHHHHHHHHHHHHhcCCCCccccchhhHHhhhhhhhhhhhhhhccCCchhHHHHHHH
Q 000515 297 AVKKYNRTAERE----ANLIRPMPILQKTVGYLLDLLDQPYDERFLGLYNFLWDRMRAIRMDLRMQHIFNQEAITMLEQM 372 (1450)
Q Consensus 297 AVKkYsRSAAge----PsdVRPP~VL~kTmdYLl~~I~~p~de~f~~~Y~FLwDRtRAIRQDLTvQ~i~~~eAI~VlEri 372 (1450)
|||+|+|||||+ |++||||+||.+||+||+++++..++.++..+|+||||||||||||||+||+++.+||.|+|+|
T Consensus 144 aVK~ysRPAAgke~pLPsdvRP~~VL~~T~dYLl~~v~~~~~~sl~~~y~FvwDRtRAVR~D~t~Q~~~d~~Av~llE~i 223 (927)
T KOG1860|consen 144 AVKEYSRPAAGKERPLPSDVRPPPVLVKTVDYLLGKVLCDKDISLREMYDFVWDRTRAVRQDFTIQNYSDQEAVELLERI 223 (927)
T ss_pred HHHHhcCcccCCCCCCccccCCHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 999999999874 6889999999999999999888767778899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcccCCCCCcccchhhcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhcccCCCCCcChH
Q 000515 373 IRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKRGLIISTEKEFRGYYALLKLDKHPGYKVEPA 452 (1450)
Q Consensus 373 ARFhIlslh~Lce~~~ge~~~e~FD~qqnlEQLnKcL~SL~elYdD~r~~Gi~~pNEAEFrAY~LLl~L~d~p~~~ve~~ 452 (1450)
+||||+|.|+||+.+ +.||.|||+|||+|||++|.++|+|+++.|+.||||+|||||++|++|++.
T Consensus 224 ~RfhI~~~h~Lce~~------~~Fda~~nlEQL~K~l~sL~elYdD~r~~g~~cpnE~EFR~Y~vLl~Lgd~-------- 289 (927)
T KOG1860|consen 224 ARFHILFRHRLCEEP------EQFDAQQNLEQLQKCLQSLGELYDDLRKGGIPCPNEPEFRGYYVLLSLGDP-------- 289 (927)
T ss_pred HHHHHHHHHHhccCc------ccCChhHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhcCCc--------
Confidence 999999999999864 579999999999999999999999999999999999999999999999874
Q ss_pred HHHHHHHhcCHHHhcChhhhHHHHHHHHHhhCcHHHHHH------------------HHH--hccHHHHHHHHHHHHHHH
Q 000515 453 ELSLDLAKMTPEIRQTPEVLFARSVARACRTGNFIAFFR------------------LAR--KASYLQACLMHAHFSKLR 512 (1450)
Q Consensus 453 eL~~~L~qlp~eIr~sp~VqfAL~V~~A~~~gNYvRFFR------------------Llr--sapYL~ACLLe~~F~~VR 512 (1450)
++...++.+|++++++..|++|+.++.|++.|||++||| |.. ..+||++|+++.||..+|
T Consensus 290 ~~~~~iq~~~~evr~~~~Vk~al~~~~a~~~nn~~~~~r~~~~~t~a~~~l~~~~~~l~q~p~~~~L~~~v~~~~f~~ir 369 (927)
T KOG1860|consen 290 QVVRDIQAWPDEVRQDSEVKLALCLRRAFQSNNFRRFFRLSSLRTEALQNLYTRFFKLMQSPALPYLMGCVLELFFPDIR 369 (927)
T ss_pred hHHHHHHhcCcccccchhHHHHHHHHHHhccCCeeeeeeccchhHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 356788899999999999999999999999999998875 443 268999999999999999
Q ss_pred HHHHHHHHhhcc-CCCCCCHHHHHHHhCCCh-HHHHHHHHHcCCeeccCCCccccccCCCCCCCCC-CCc----cchhhh
Q 000515 513 TQALASLYSGLQ-NNQGLPVAHVGRWLGMEE-EDIESLLEYHGFSIKEFEEPYMVKEGPFLNSDKD-YPT----KCSKLV 585 (1450)
Q Consensus 513 ~~AL~~L~kAy~-k~~~iPLs~LarlL~Fdd-EEa~eFce~hGL~v~~~ee~~lvk~g~f~~~~~~-~p~----~~s~LV 585 (1450)
..||+.|.++|. ++..||+.+|.++|.|+. |+...+|.+|||+++.++...+...-.+...-.. .+. ....|.
T Consensus 370 ~~al~~~~~~~~~~~~~vp~~~l~~~l~f~~~e~~~~~~~~y~Leis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~ 449 (927)
T KOG1860|consen 370 WAALRAMSHAYNSKHVPVPLGKLDRILLFDGEEELKVVCNYYGLEISVDDKIVLSIGCHPNHVVTASKPQVLRKVLETLL 449 (927)
T ss_pred HHHHHHHHHHHhccCCCcchhHHHHHHhcCChhhhHhhhhheeeEeeccccccccccCCcccccccccchHHHHHHHhhh
Confidence 999999999996 467899999999999997 7799999999999975433222211111111111 111 111233
Q ss_pred hhccCCCcccccccCC-CCCCCCCCccccccccccccCccccc-ccccccccchhhccCCccccccCCCccccccccc--
Q 000515 586 LLKRSGRMVEDMSASS-PVTPPAEPTKAMQLDNKYKSDIEAIP-SVERKICVPVVEEEMPDSVAISSPKNSIAFRPMI-- 661 (1450)
Q Consensus 586 esKR~~r~ledv~~~~-~~~~~~~~~~~~q~~~~~~~~~~a~~-~~~~~~~~~~~~ee~pd~~~~~sp~~~~~~~~~~-- 661 (1450)
+..-..+.+.|...++ .....+...+ .++- .+..++..+..-+-+ ...+..++..++.++..+
T Consensus 450 ~~~~~~~~~~~~~~g~~~~~~~~~~~~------------~~~~d~i~~~~~~~~~~pi~-~~~~~~~~~q~~~~~~~~~p 516 (927)
T KOG1860|consen 450 SPLIQRTLLADDINGGRGNRLSAKHMC------------PPISDLISLKIAVSSDIPIM-LNNTSKSLLQGSGFKPAKKP 516 (927)
T ss_pred hcccCCcchhhhhcCCccccccccccC------------cccccccccccccccccccc-CcccchhhhccCCCCCCCCC
Confidence 3333344343333333 2112222211 1110 011122211111111 111222222222222222
Q ss_pred ----ccccccccChhhhhhccccccCCC--CCCCCCCCCCCCccccccccccCccccccCcccccccCccCCC------h
Q 000515 662 ----EASMVDQQSQDDHQRTGASVFPWV--FSAPHSSPISRPAKFLTEEKQNGDVLFGISPEKKMFSDMEGSP------T 729 (1450)
Q Consensus 662 ----~~~~v~~~a~~~~~~~~~~~f~~~--~~~~~~~~~~~~t~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~------~ 729 (1450)
-.+...+..+...+.++. |++. +..|+..|..+ + ++..++..|.+|+--.++....-- .
T Consensus 517 ~p~~~r~~l~~~~~~~i~~a~~--~~~~~~~~~p~~~p~i~-----~--~~~~~v~~~lsp~~~~~s~~~~~~e~~~~~~ 587 (927)
T KOG1860|consen 517 APVVNRPNLLVVLDEEIQSASF--FGCINKSTLPFLVPVIH-----G--KQKTTVDEMLSPEECVFSVENSVREEIYAVM 587 (927)
T ss_pred CCceechhHHHHhhhhhhcccc--ccCccccccccccceec-----c--ccccchhhccChhhhhhhhccceeecchhhh
Confidence 122225555555555554 4443 33344444221 1 334455566555554443332222 2
Q ss_pred hhhhhhHHhhhcCCcccccccccCCCcchhhhhccccccCCccchhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 000515 730 QLVARTEALQDRSPSSKRYDYSVGSSLQQGAAIKSVQYEEPQDTHQEGENIKVVQDENNEVMKNYASAKLKLILRLWRRR 809 (1450)
Q Consensus 730 e~v~~~~a~~e~~pe~~r~~~e~~~~~~~~~~~~~~~~ee~~~~~~e~e~~~~~~~~~~~~~eeia~aklkl~lrlWrrr 809 (1450)
...++.. +++ .|.+.+.++.-+..++......++..+.+ ++ ++..+. +...-.. |+|.+.+...+.|+|.+.
T Consensus 588 ~~i~~~~-~~~-~~ls~~~e~i~ee~~~~l~~~~~~~~~~r-d~-~~~~~~-iv~~~~~---e~V~~s~~~~l~~l~~~~ 659 (927)
T KOG1860|consen 588 RSITQNK-AAE-KPLSVEVEEIREESVQALKNRKTTLKEFR-DG-MDIIEH-IVRLLYN---EVVGKSVEGNLARLFEEK 659 (927)
T ss_pred hhccccc-ccc-ccchhhhHHHHHHHHHHHHHHHHHHHHHH-Hh-HHHHHH-HHHHHHH---HHHHHHHHHHHHHHHhhc
Confidence 2222222 222 34555444443344444444444444442 11 111111 2333333 889999999999999999
Q ss_pred hHHHHHHHHHHhhHHHhhhhccCCCCCcccC-CCCCCccCccchHHHHHHHhhhhhcccCcCChhHHHHhhhhccCCCCc
Q 000515 810 SLKQKELRKQRQLAANTALNSLSLGPPIRQN-SDQPSTCGEFDIDHVMRERSEKHDRSWSRLNVSDAIAGILGRRNPKAK 888 (1450)
Q Consensus 810 a~~~relr~~R~l~a~aAL~sLsLG~p~~~~-~~~p~~~~~~di~~~mrer~e~~~~sws~Ldvs~~v~~~L~~rnP~a~ 888 (1450)
..++.++.+.++...-|+|.. |-|++-. +++-..|+++.++.+||++..+.++.|++|| ..-++++...|+|-
T Consensus 660 ~~r~~~i~~~~~~~~~~~l~~---~~~~~~~~~~q~k~~~~~~~~~~~~r~~~r~e~~~~~ln-~~k~~~~~l~r~p~-- 733 (927)
T KOG1860|consen 660 PYRECDIDEETEEVYLAVLRQ---QAPIRWDVRDQLKAAAKLKKIEMERRCVPRWEKEESRLN-VKKIEPINLQRLPI-- 733 (927)
T ss_pred hhHHHHHHHHHHHHHHHHHhh---cCCeEeeHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhcc-chhccccccccccc--
Confidence 999999999999999889988 8888877 8888899999999999999999999999999 99999999999995
Q ss_pred eeEEEEEEeccCCCCCchhhhhhhhhhHHHHHHHHhhcCCCCCCCCCceecCCCchhhhccccCCCCCceeEEEEEeeec
Q 000515 889 CLCWKIVLCSHACLEGDRQMQRKQISDLAAELWLFSKLKPSEKDDGDVVFASPGLSIWKKWIPSQSGTDLICCFSFVKEM 968 (1450)
Q Consensus 889 ~l~WKlvl~~~~~~~g~~~~~~~~~~~~~a~~WL~sKL~~~~~~~~~~~~~s~gLs~~~~w~~s~~~~~~~~c~~vvrd~ 968 (1450)
|...|.+.-.++ +.++..+..|+.+..|+..|+|..-+- +. +-..|++|+...++.+ ||...+.|.
T Consensus 734 ----K~~~~~~t~~~~-~~~ss~~~~~~~~~~~~s~~~~~~~k~------~~-~~~~w~~~~~n~~~~~--~~~~~~~~~ 799 (927)
T KOG1860|consen 734 ----KSTHIQQTMFKD-RASSSLVLDSSQKWRLYSPKLMAFKKI------AE-KQKRWNELFANFSKCD--ETKFKFDDP 799 (927)
T ss_pred ----cceeEeeeeccc-chhhhhccchhHHhcccchhhhHHHHH------hh-hHhHHHHHHhhhhhcc--ccccccCCc
Confidence 888888877655 455667778999999999999998533 24 9999999998888777 999999998
Q ss_pred cc-ccccccccCcceEEEEeecCchhHHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCcc
Q 000515 969 EF-NHVNDAVSGASAVLFLVSESIPWKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRV 1047 (1450)
Q Consensus 969 ~~-~~~~~~~~GasailFlvsE~~~~~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~I 1047 (1450)
+. +.++.+.+|+|++.|...- +.+.|..+++.+|++-+-++..|++++-+..++..+-|..++..+++++||+++++
T Consensus 800 ~~~~~~~~t~~~~s~~n~~~~~--~~n~~~~~~s~~ls~~~~~s~~~~~v~~~~~~~~~~l~~~~~~s~~~~~di~~~~~ 877 (927)
T KOG1860|consen 800 DSWNKIIRTRSWNSSLNKKPVQ--QINLQSPQTSISLSRRHIQSVEPEAVLLTELKEKIDLPREDFNSGFEEHDIKKLQD 877 (927)
T ss_pred chHhhhhhhhcchhhhhhcccc--ceeecchhhccchhcccccceeeeeeccccchhhhccchhhhhccccccchhHHHH
Confidence 66 6999999999999999887 88889999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecCCccCCCCCcccchHHHHhHHHHhhccCCCCcceeecccHHH
Q 000515 1048 NRVLVKFLVGDQQSSHSDEFFSDEQLREGLQWLASESPLQPVVYCMRTREL 1098 (1450)
Q Consensus 1048 ~s~lvvfl~~~~~~~~~~gf~sd~~L~~gl~WLA~~~P~qP~l~~v~~rel 1098 (1450)
..++...+..+.+.+-.-.|+.|-.|..++.| |++.+.|++++.++++||
T Consensus 878 ~~~~~~~~~~k~~~~~~~~~~~~~~l~~~~~~-aen~~m~~~l~~~k~~el 927 (927)
T KOG1860|consen 878 ALLSSNEALAKSQHGISVSVEADSPLLDIFWY-AENELMQAELRHRKLLEL 927 (927)
T ss_pred HHhhhHHHHhhcccCceeEEecCchHHHHHHH-hccchhHHHHHHHHhccC
Confidence 99999999999999999999999999999999 999999999999998875
No 2
>COG5079 SAC3 Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning]
Probab=100.00 E-value=2e-65 Score=585.48 Aligned_cols=374 Identities=26% Similarity=0.429 Sum_probs=309.6
Q ss_pred HHHHHHHHHHhhhhhhccccCCCccccCccc-CCCCCCCChHHHhhhhcCCcccCCCCCCCCCcCCCccccccCcccccc
Q 000515 182 EMQAKAKRLARFKVELSENVQISPEITDQKV-SNSGRGQSVVERQKFVGGHSIESAKDYPNENTLSDNEGLEASSVIIGS 260 (1450)
Q Consensus 182 e~~~~~kR~~rf~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~eR~k~~~~~l~ds~~d~~~~~~i~d~~~L~~a~~ivGT 260 (1450)
+..++.+|.+||..-+ + .+ .--=..++..||.-|++. + ..++.+++.+|||
T Consensus 25 D~~~r~~m~~l~ss~~-----------d-~n~fe~LkklR~kere~~eak----~------------a~~l~~a~vfvGt 76 (646)
T COG5079 25 DLGMRVFMVLLFSSTL-----------D-TNPFELLKKLRAKERELLEAK----S------------ANALPSAIVFVGT 76 (646)
T ss_pred cHHHHHHHHHHHHhhc-----------c-cCHHHHHHHHHHHHHHHHHhh----c------------ccccchhheeecc
Confidence 6677799999998721 1 11 100112344666666544 1 2457889999999
Q ss_pred CCCCCCHHHHHHHHHhCCCCccccccCCCCCcchhhhhhhcccCcccc----cccCCCHHHHHHHHHHHHHHhcCCCCcc
Q 000515 261 CPDMCPESERAERERKGDLDRYERLDGDRNQTNEYLAVKKYNRTAERE----ANLIRPMPILQKTVGYLLDLLDQPYDER 336 (1450)
Q Consensus 261 C~DMCPE~ER~~Re~e~~Ls~fEk~dg~~~~~d~~~AVKkYsRSAAge----PsdVRPP~VL~kTmdYLl~~I~~p~de~ 336 (1450)
|+|||||+||.+|..+++|++||.. +..+++++.+|||.|+|+|||+ |++||||+||++|+|||+..+.. +.
T Consensus 77 C~dmCPefEreeR~lqn~v~pyE~n-P~~k~a~~~lAvKay~RPAAgk~p~LPsDVRPp~VLvktidylv~~c~~---d~ 152 (646)
T COG5079 77 CMDMCPEFEREERVLQNDVSPYEAN-PNVKKASRTLAVKAYHRPAAGKHPELPSDVRPPEVLVKTIDYLVKLCAG---DQ 152 (646)
T ss_pred hhhhCchHHHHHHHHhcCCchhhcC-ccccccchhhHHHHhcCccccCCCCCcccCCChHHHHHHHHHHHHHhcC---cc
Confidence 9999999999999999999999986 6678899999999999999874 79999999999999999955543 24
Q ss_pred ccchhhHHhhhhhhhhhhhhhhccCCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccchhhcHHHHHHHHHHHHHHH
Q 000515 337 FLGLYNFLWDRMRAIRMDLRMQHIFNQEAITMLEQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMY 416 (1450)
Q Consensus 337 f~~~Y~FLwDRtRAIRQDLTvQ~i~~~eAI~VlEriARFhIlslh~Lce~~~ge~~~e~FD~qqnlEQLnKcL~SL~elY 416 (1450)
+...|.|+||||||||||||+||..+.+||+|+|+||||||+|.|+||+. ..|+.||++|||.|.|.+|.++|
T Consensus 153 l~e~~~Fv~drtRavrqDftiQN~~g~dAV~c~EriaRfhIl~lh~L~~~-------p~Fs~qqeleQL~ksL~sL~elY 225 (646)
T COG5079 153 LIEMHRFVRDRTRAVRQDFTIQNEKGKDAVECHERIARFHILFLHLLHDH-------PHFSKQQELEQLKKSLASLIELY 225 (646)
T ss_pred hHHHHHHHHhhhHHHHhhceeecccCchHHHHHHHHHHHHHHHHHHHhcC-------ccccHHhHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999984 46999999999999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHhcccCCCCCcChHHHHHHHHhcCHHHhcChhhhHHHHHHHHHhhCc-----------
Q 000515 417 DDHRKRGLIISTEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEIRQTPEVLFARSVARACRTGN----------- 485 (1450)
Q Consensus 417 dD~r~~Gi~~pNEAEFrAY~LLl~L~d~p~~~ve~~eL~~~L~qlp~eIr~sp~VqfAL~V~~A~~~gN----------- 485 (1450)
||.+..+..||||+|||||.||.+|+| |.| -..++.+|..++..+.|+.|+.+..-...+|
T Consensus 226 dd~r~~~~~cpneaEFraYaiL~slgD-p~y-------v~~iq~wp~~if~d~~vq~alkl~~laq~nn~r~~~~rntea 297 (646)
T COG5079 226 DDGRAGKKECPNEAEFRAYAILASLGD-PRY-------VAGIQGWPGGIFCDLPVQIALKLMQLAQSNNFRLLGRRNTEA 297 (646)
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhCC-chh-------hhccccCCccccccchHHHHHHHHHHhhccCeeeccccchhh
Confidence 999999999999999999999999986 444 3456778999999999999998776433332
Q ss_pred ----HHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCHHHHHHHhCCCh-HHHHHHHHHcCCeec
Q 000515 486 ----FIAFFRLAR--KASYLQACLMHAHFSKLRTQALASLYSGLQ-NNQGLPVAHVGRWLGMEE-EDIESLLEYHGFSIK 557 (1450)
Q Consensus 486 ----YvRFFRLlr--sapYL~ACLLe~~F~~VR~~AL~~L~kAy~-k~~~iPLs~LarlL~Fdd-EEa~eFce~hGL~v~ 557 (1450)
|.|||+|++ +++|||+|+++.|+..+|..||++|.+.|- .+..+|..+|.++|.|++ +++++||++||+++.
T Consensus 298 c~nlytrFfkl~qSpsv~~lmg~lle~h~~sir~~aLkAm~k~~~sahk~ipf~~l~~il~f~~~~e~~efckyy~lei~ 377 (646)
T COG5079 298 CFNLYTRFFKLIQSPSVQYLMGCLLEKHNISIRGGALKAMEKEIESAHKNIPFVDLSGILDFEEKGEGEEFCKYYGLEIR 377 (646)
T ss_pred hhHHHHHHHHHHhCccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCCCeehhhhhccccccchhHHHhhhcceeee
Confidence 779999999 589999999999999999999999999874 577899999999999997 789999999999994
Q ss_pred --cCCC-ccccccCCCCCCCCCCCccchhhhhhccCCCcccccccCCCC
Q 000515 558 --EFEE-PYMVKEGPFLNSDKDYPTKCSKLVLLKRSGRMVEDMSASSPV 603 (1450)
Q Consensus 558 --~~ee-~~lvk~g~f~~~~~~~p~~~s~LVesKR~~r~ledv~~~~~~ 603 (1450)
+.++ +.++.-..+++...+ ..-...+++++.+.+++.|..-++.-
T Consensus 378 ~ed~~~l~i~~~~s~~i~~~kp-~~i~~tlLesrLq~~~fa~~ingg~d 425 (646)
T COG5079 378 IEDSVKLPIVFMLSACIDYKKP-TAILCTLLESRLQARRFADGINGGQD 425 (646)
T ss_pred cccccccchhhchhhhhccccc-hhHHHHHHHHHHhhccccccccCCcc
Confidence 3333 233333444444433 11244688999999999888876644
No 3
>KOG1861 consensus Leucine permease transcriptional regulator [Transcription]
Probab=100.00 E-value=2.1e-43 Score=403.72 Aligned_cols=296 Identities=24% Similarity=0.375 Sum_probs=243.1
Q ss_pred cccCcCCCchhHHHHHHHHHHHHHhhhhhhccccCCCccccCcccCCCCCCCChHHHhhhhcCCcccCCCCCCCCCcCCC
Q 000515 168 LQENSNFTQYDAEREMQAKAKRLARFKVELSENVQISPEITDQKVSNSGRGQSVVERQKFVGGHSIESAKDYPNENTLSD 247 (1450)
Q Consensus 168 ~~~~~~~~~~~~~~e~~~~~kR~~rf~~~~~~~~~~~~~i~~~~~~~~~~~~~~~eR~k~~~~~l~ds~~d~~~~~~i~d 247 (1450)
+-+|..+. +..+|+.+|.+|++||....++...++......++ ++ .+.+
T Consensus 221 ~~~n~~s~--~~~d~e~rr~~Ra~RF~~~~s~s~~~~p~~~~~~n-----------------~~------------~~~~ 269 (540)
T KOG1861|consen 221 SGKNASSV--AGSDEEARRKRRARRFSQGGSRSTNNNPNLEDSKN-----------------LN------------SIVS 269 (540)
T ss_pred cccchhhc--cCchHHHHHHHHHHHHhhccccccCCCcchhhccc-----------------hh------------hccC
Confidence 33444433 45567778899999999965555444332211000 01 1111
Q ss_pred ccccccCccccccCCCCCCHHHHHHHHHhCCCCccccccCCCCCcchhhhhhhccc-CcccccccCCCHHHHHHHHHHHH
Q 000515 248 NEGLEASSVIIGSCPDMCPESERAERERKGDLDRYERLDGDRNQTNEYLAVKKYNR-TAEREANLIRPMPILQKTVGYLL 326 (1450)
Q Consensus 248 ~~~L~~a~~ivGTC~DMCPE~ER~~Re~e~~Ls~fEk~dg~~~~~d~~~AVKkYsR-SAAgePsdVRPP~VL~kTmdYLl 326 (1450)
++.- ..+|||||++ +| |.|.| ++|++|+.|||++||++++.-|.
T Consensus 270 ~~~q--~l~IvGtCq~------------------lE---------------KsyLRLTsAPdPstVRP~~VL~ksL~~vk 314 (540)
T KOG1861|consen 270 PSHQ--KLHIVGTCQE------------------LE---------------KSYLRLTSAPDPSTVRPLEVLKKSLCLVK 314 (540)
T ss_pred cccC--ceEEEEechh------------------HH---------------HhHhhhccCCCccccCCHHHHHHHHHHHH
Confidence 1111 4589999999 24 99999 78999999999999999999999
Q ss_pred HHhcCCCCccccchhhHHhhhhhhhhhhhhhhccCCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccchhhcHHHHH
Q 000515 327 DLLDQPYDERFLGLYNFLWDRMRAIRMDLRMQHIFNQEAITMLEQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMN 406 (1450)
Q Consensus 327 ~~I~~p~de~f~~~Y~FLwDRtRAIRQDLTvQ~i~~~eAI~VlEriARFhIlslh~Lce~~~ge~~~e~FD~qqnlEQLn 406 (1450)
+++... ..|.|++|+|||||||||||.|.++|+|+|||.+||+.+. +| ++|+||
T Consensus 315 dk~k~~------~~Y~y~CdQ~KSiRQDLTVQ~IrneFTveVYEtHARIALE---------kG-----------D~~EfN 368 (540)
T KOG1861|consen 315 DKWKAK------ANYAYLCDQFKSIRQDLTVQRIRNEFTVEVYETHARIALE---------KG-----------DLEEFN 368 (540)
T ss_pred HHHHhh------ccHHHHHHHHHHHhhhhhhheeccceeeeeehhhhHHHHh---------cC-----------CHHHHH
Confidence 999752 5799999999999999999999999999999999999875 12 689999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhcccCCCCCcChHHHHHHHHhcCHHHhcChhhhHHHHHHHHHhhCcH
Q 000515 407 KTSVELFQMYDDHRKRGLIISTEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEIRQTPEVLFARSVARACRTGNF 486 (1450)
Q Consensus 407 KcL~SL~elYdD~r~~Gi~~pNEAEFrAY~LLl~L~d~p~~~ve~~eL~~~L~qlp~eIr~sp~VqfAL~V~~A~~~gNY 486 (1450)
||+++|+.+|. .|+++. -.||.||.|||.+...+. .++...|..+.+|++.++.|.+||+|..|+..|||
T Consensus 369 QCQtQLk~LY~----egipg~-~~EF~AYriLY~i~tkN~-----~di~sll~~lt~E~ked~~V~hAL~vR~A~~~GNY 438 (540)
T KOG1861|consen 369 QCQTQLKALYS----EGIPGA-YLEFTAYRILYYIFTKNY-----PDILSLLRDLTEEDKEDEAVAHALEVRSAVTLGNY 438 (540)
T ss_pred HHHHHHHHHHc----cCCCCc-hhhHHHHHHHHHHHhcCc-----hHHHHHHHhccHhhccCHHHHHHHHHHHHHHhccH
Confidence 99999999994 366665 899999999999865432 35777888899999999999999999999999999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhCCCh-HHHHHHHHHcCCeeccCCCcccc
Q 000515 487 IAFFRLARKASYLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGMEE-EDIESLLEYHGFSIKEFEEPYMV 565 (1450)
Q Consensus 487 vRFFRLlrsapYL~ACLLe~~F~~VR~~AL~~L~kAy~k~~~iPLs~LarlL~Fdd-EEa~eFce~hGL~v~~~ee~~lv 565 (1450)
++||+|++.+|.|..|||..|+.+.|..||.+|+++|. ..||+++|+..|.|+. |+|..|++.++++-+..+..++.
T Consensus 439 ~kFFrLY~~AP~M~~yLmdlF~erER~~Al~ii~Ksyr--P~i~~~fi~~~laf~~~e~c~~~l~~~~~~~~~~g~~~~~ 516 (540)
T KOG1861|consen 439 HKFFRLYLTAPNMSGYLMDLFLERERKKALTIICKSYR--PTITVDFIASELAFDSMEDCVNFLNEQNLTYDSLGPQILD 516 (540)
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHcC--CCccHHHHhhhhhhchHHHHHHHHhccCccccccCCcccc
Confidence 99999999999999999999999999999999999996 6899999999999997 89999999999877665555554
Q ss_pred cc
Q 000515 566 KE 567 (1450)
Q Consensus 566 k~ 567 (1450)
+.
T Consensus 517 ~~ 518 (540)
T KOG1861|consen 517 KN 518 (540)
T ss_pred cc
Confidence 43
No 4
>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.
Probab=100.00 E-value=1.5e-41 Score=357.41 Aligned_cols=200 Identities=36% Similarity=0.625 Sum_probs=165.3
Q ss_pred cccccCCCHHHHHHHHHHHHHHhcCCCCccccchhhHHhhhhhhhhhhhhhhccCCchhHHHHHHHHHHHHHHHhhhhhc
Q 000515 307 REANLIRPMPILQKTVGYLLDLLDQPYDERFLGLYNFLWDRMRAIRMDLRMQHIFNQEAITMLEQMIRLHIIAMHELCEY 386 (1450)
Q Consensus 307 gePsdVRPP~VL~kTmdYLl~~I~~p~de~f~~~Y~FLwDRtRAIRQDLTvQ~i~~~eAI~VlEriARFhIlslh~Lce~ 386 (1450)
+.|++|||++||++||+||++++. +..+|+||||||||||||+++||+.+.++|.|||.+|||||++.
T Consensus 3 p~p~~vRp~~vL~~t~~~l~~~~~------~~~~y~fi~drlRsiRqDl~vQ~~~~~~~i~v~E~~ar~~i~~~------ 70 (204)
T PF03399_consen 3 PNPSDVRPPEVLKKTLNYLLRKIP------FKDDYNFIWDRLRSIRQDLTVQNIENDFAIKVYERIARFAIESG------ 70 (204)
T ss_dssp --------HHHHHHHHHHHHHHTC------CCCHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHHH------
T ss_pred CChHhCCCHHHHHHHHHHHHHHhh------hhhhhHHHHHHhHHHHhhHHHHhcCCHHHHHHHHHHHHHHhhcC------
Confidence 568999999999999999999993 35799999999999999999999999999999999999999861
Q ss_pred ccCCCCCcccchhhcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhcccCCCCCcChHHHHHHHHhcCHHHh
Q 000515 387 TKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKRGLIISTEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEIR 466 (1450)
Q Consensus 387 ~~ge~~~e~FD~qqnlEQLnKcL~SL~elYdD~r~~Gi~~pNEAEFrAY~LLl~L~d~p~~~ve~~eL~~~L~qlp~eIr 466 (1450)
|++||++|+.+|+++|++.+. +..++|++||.||+||+++.+++ ..++...+..+|++++
T Consensus 71 --------------d~~qf~~c~~~L~~lY~~~~~-~~~~~~~~ef~~y~lL~~l~~~~-----~~~~~~~l~~l~~~~~ 130 (204)
T PF03399_consen 71 --------------DLEQFNQCLSQLKELYDDLRD-LPPSPNEAEFIAYYLLYLLCQNN-----IPDFHMELELLPSEIL 130 (204)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHH-T---TTHHHHHHHHHHHTT-T--------THHHHHHTTS-HHHH
T ss_pred --------------CHHHHHHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHHHHHccc-----chHHHHHHHHCchhhh
Confidence 589999999999999999744 66889999999999999995432 2467778888999999
Q ss_pred cChhhhHHHHHHHHHhhCcHHHHHHHH--HhccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhCC
Q 000515 467 QTPEVLFARSVARACRTGNFIAFFRLA--RKASYLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGM 540 (1450)
Q Consensus 467 ~sp~VqfAL~V~~A~~~gNYvRFFRLl--rsapYL~ACLLe~~F~~VR~~AL~~L~kAy~k~~~iPLs~LarlL~F 540 (1450)
++|.|++|++|..|+.+|||++||+++ +++||+++|+++.|++.||..||++|.+||.+ .+|++.|++||+|
T Consensus 131 ~~~~i~~al~l~~a~~~gny~~ff~l~~~~~~~~l~~~l~~~~~~~iR~~al~~i~~ay~~--~i~l~~l~~~L~F 204 (204)
T PF03399_consen 131 SSPYIQFALELCRALMEGNYVRFFRLYRSKSAPYLFACLMERFFNRIRLRALQSISKAYRS--SIPLSFLAELLGF 204 (204)
T ss_dssp TSHHHHHHHHHHHHH--TTHHHHHHHHT-TTS-HHHHHHHGGGHHHHHHHHHHHHHHHS-T---EEHHHHHHHTT-
T ss_pred cCHHHHHHHHHHHHHHcCCHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCHHHHHHHcCC
Confidence 999999999999999999999999999 78999999999999999999999999999973 6999999999998
No 5
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=98.27 E-value=6.4e-06 Score=84.56 Aligned_cols=124 Identities=17% Similarity=0.295 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhcccCCCCCcChHHHHHHHHhcCHHHhcC-hhhhHHHHHHHHHhhCcHHHHHHHHHhc--cHHHHHHHH
Q 000515 429 EKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEIRQT-PEVLFARSVARACRTGNFIAFFRLARKA--SYLQACLMH 505 (1450)
Q Consensus 429 EAEFrAY~LLl~L~d~p~~~ve~~eL~~~L~qlp~eIr~s-p~VqfAL~V~~A~~~gNYvRFFRLlrsa--pYL~ACLLe 505 (1450)
..++.+-+||.+|-.++- .++...+.++|+++.+. |.|+....|..++.+++|..||..++.. +-...-++.
T Consensus 3 ~~~~~~~~Ll~~L~~~~~-----~df~~~~~rip~~~~~~~~~i~~i~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~ 77 (143)
T PF10075_consen 3 NPEIYALILLKYLMQNDL-----SDFRLLWKRIPEELKQSDPEIKAIWSLGQALWEGDYSKFWQALRSNPWSPDYKPFVP 77 (143)
T ss_dssp -HHHHHHHHHHHHHTTTS-----THHHHHHHTS-HHHHTS-TTHHHHHHHHHHHHTT-HHHHHHHS-TT----HHHHTST
T ss_pred chhHHHHHHHHHHHcCCc-----hHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHhccchHHHHHHHH
Confidence 467788777777766542 24556677899999995 9999999999999999999999999864 223344566
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhCCChHHHHHHHHHcCCeeccCC
Q 000515 506 AHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGMEEEDIESLLEYHGFSIKEFE 560 (1450)
Q Consensus 506 ~~F~~VR~~AL~~L~kAy~k~~~iPLs~LarlL~FddEEa~eFce~hGL~v~~~e 560 (1450)
.+-..+|.+++..+.++|. .|+++.++++|||+++++.+||...|=++++++
T Consensus 78 ~~~~~iR~~i~~~i~~aY~---sIs~~~la~~Lg~~~~el~~~~~~~gW~~d~~~ 129 (143)
T PF10075_consen 78 GFEDTIRERIAHLISKAYS---SISLSDLAEMLGLSEEELEKFIKSRGWTVDGDG 129 (143)
T ss_dssp THHHHHHHHHHHHHHHH-S---EE-HHHHHHHTTS-HHHHHHHHHHHT-EE----
T ss_pred HHHHHHHHHHHHHHHHHHh---HcCHHHHHHHhCCCHHHHHHHHHHcCCEECCCc
Confidence 7789999999999999996 899999999999998899999999999997543
No 6
>KOG3151 consensus 26S proteasome regulatory complex, subunit RPN12/PSMD8 [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0053 Score=68.72 Aligned_cols=166 Identities=14% Similarity=0.202 Sum_probs=135.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhcccCCCCCcccchhhcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhccc
Q 000515 364 EAITMLEQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKRGLIISTEKEFRGYYALLKLDK 443 (1450)
Q Consensus 364 eAI~VlEriARFhIlslh~Lce~~~ge~~~e~FD~qqnlEQLnKcL~SL~elYdD~r~~Gi~~pNEAEFrAY~LLl~L~d 443 (1450)
.|-+|||..|-..|.. -|.+-|..-+.+|+-.|-|...+=..+++.--+.+.+||+.|..
T Consensus 54 ~aR~ilEi~vl~SI~t--------------------~D~~sFerY~~Qlk~YY~d~~~~l~~S~~~~~l~GLnLL~LLsq 113 (260)
T KOG3151|consen 54 IARDILEIGVLLSILT--------------------KDFESFERYMNQLKPYYFDYNEKLSESEKKHKLLGLNLLYLLSQ 113 (260)
T ss_pred HHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHhcchhcccccccCcchhhhHHHHHHHHHHHHh
Confidence 4667899888877752 14567778888999999887764446778889999999999865
Q ss_pred CCCCCcChHHHHHHHHhcCHHHhcC-hhhhHHHHHHHHHhhCcHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHHh
Q 000515 444 HPGYKVEPAELSLDLAKMTPEIRQT-PEVLFARSVARACRTGNFIAFFRLARKASY-LQACLMHAHFSKLRTQALASLYS 521 (1450)
Q Consensus 444 ~p~~~ve~~eL~~~L~qlp~eIr~s-p~VqfAL~V~~A~~~gNYvRFFRLlrsapY-L~ACLLe~~F~~VR~~AL~~L~k 521 (1450)
+ ...++-.+|..+|..+.++ |.|..++.+-..+..|-|-+.|...+++|. .-...|......||...=.++-+
T Consensus 114 N-----RiaeFHteLe~lp~~~l~~~~~I~~~v~LEq~~MEGaYnKv~~a~~s~p~~~y~~FmdIl~~tiRdEIA~c~EK 188 (260)
T KOG3151|consen 114 N-----RIAEFHTELELLPKKILQHNPYISHPVSLEQSLMEGAYNKVLSAKQSIPSEEYTYFMDILLDTIRDEIAGCIEK 188 (260)
T ss_pred c-----cHHHHHHHHHhccHHHhhccchhhhHHHHHHHHHhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2367888899999998877 899999999999999999999999999873 34566777778899988888889
Q ss_pred hccCCCCCCHHHHHHHhCCCh-HHHHHHHHHcCCeec
Q 000515 522 GLQNNQGLPVAHVGRWLGMEE-EDIESLLEYHGFSIK 557 (1450)
Q Consensus 522 Ay~k~~~iPLs~LarlL~Fdd-EEa~eFce~hGL~v~ 557 (1450)
+|. .+|++..+.+|.|+. ++...|...-+-.++
T Consensus 189 sYd---~l~~s~a~~~L~f~~~~e~~~~~~~r~W~l~ 222 (260)
T KOG3151|consen 189 SYD---KLSASDATQMLLFNNDKELKKFATERQWPLD 222 (260)
T ss_pred HHh---hcCHHHHHHHHhcCChHHHHHHHHhcCCccc
Confidence 996 899999999999985 778888887775554
No 7
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=95.45 E-value=0.045 Score=57.87 Aligned_cols=96 Identities=27% Similarity=0.364 Sum_probs=67.6
Q ss_pred cccccCcceEEEEeecCch--hHHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCcccceE
Q 000515 974 NDAVSGASAVLFLVSESIP--WKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVL 1051 (1450)
Q Consensus 974 ~~~~~GasailFlvsE~~~--~~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~I~s~l 1051 (1450)
..-..++.||||+|.-+.+ +...+..|+.||.. +.-...|+|||.--++....-...+|.+.|+|+.|. .+. .|-
T Consensus 76 ~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~-~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~-~~~-~~~ 152 (175)
T PF00025_consen 76 KSYFQNADGIIFVVDSSDPERLQEAKEELKELLND-PELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLK-NKR-PWS 152 (175)
T ss_dssp GGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTS-GGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTT-SSS-CEE
T ss_pred eeeccccceeEEEEecccceeecccccchhhhcch-hhcccceEEEEeccccccCcchhhHHHhhhhhhhcc-cCC-ceE
Confidence 3456689999999965544 56678889997775 344689999999877765555678899999999987 222 223
Q ss_pred EEEecCCccCCCCCcccchHHHHhHHHHhhc
Q 000515 1052 VKFLVGDQQSSHSDEFFSDEQLREGLQWLAS 1082 (1450)
Q Consensus 1052 vvfl~~~~~~~~~~gf~sd~~L~~gl~WLA~ 1082 (1450)
|+...... .+-+.|||.||.+
T Consensus 153 v~~~sa~~----------g~Gv~e~l~WL~~ 173 (175)
T PF00025_consen 153 VFSCSAKT----------GEGVDEGLEWLIE 173 (175)
T ss_dssp EEEEBTTT----------TBTHHHHHHHHHH
T ss_pred EEeeeccC----------CcCHHHHHHHHHh
Confidence 33332222 1339999999975
No 8
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=94.29 E-value=0.13 Score=54.76 Aligned_cols=113 Identities=19% Similarity=0.276 Sum_probs=82.2
Q ss_pred EEEEEeeeccccc-----ccccccCcceEEEEe--ecCchhHHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHH
Q 000515 960 CCFSFVKEMEFNH-----VNDAVSGASAVLFLV--SESIPWKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAV 1032 (1450)
Q Consensus 960 ~c~~vvrd~~~~~-----~~~~~~GasailFlv--sE~~~~~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~ 1032 (1450)
|--+++-|+.-+. -+----|.|+|+|.| +|---|.-.|..||+|| +.|+=...|||||---.+.-.--...+
T Consensus 64 nvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL-~k~~l~gip~LVLGnK~d~~~AL~~~~ 142 (186)
T KOG0075|consen 64 NVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLL-DKPSLTGIPLLVLGNKIDLPGALSKIA 142 (186)
T ss_pred ceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHh-cchhhcCCcEEEecccccCcccccHHH
Confidence 3344566885431 223356999999999 44555888999999955 789999999999965444333336789
Q ss_pred HHhhhCCCccccCcccceEEEEecCCccCCCCCcccchHHHHhHHHHhhccCCC
Q 000515 1033 IINELGLSELDKSRVNRVLVKFLVGDQQSSHSDEFFSDEQLREGLQWLASESPL 1086 (1450)
Q Consensus 1033 i~~~LgL~~i~~~~I~s~lvvfl~~~~~~~~~~gf~sd~~L~~gl~WLA~~~P~ 1086 (1450)
|+++|||.+|..--|.=|.|.-= .+..+...+.||...|-+
T Consensus 143 li~rmgL~sitdREvcC~siSck-------------e~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 143 LIERMGLSSITDREVCCFSISCK-------------EKVNIDITLDWLIEHSKS 183 (186)
T ss_pred HHHHhCccccccceEEEEEEEEc-------------CCccHHHHHHHHHHHhhh
Confidence 99999999999999988776532 244577889999876643
No 9
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=93.93 E-value=0.36 Score=45.96 Aligned_cols=72 Identities=25% Similarity=0.377 Sum_probs=55.7
Q ss_pred HHHHHHhhCcHHHHHHHHHhc-cHHH-----HHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhCCChHHHHHHH
Q 000515 476 SVARACRTGNFIAFFRLARKA-SYLQ-----ACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGMEEEDIESLL 549 (1450)
Q Consensus 476 ~V~~A~~~gNYvRFFRLlrsa-pYL~-----ACLLe~~F~~VR~~AL~~L~kAy~k~~~iPLs~LarlL~FddEEa~eFc 549 (1450)
++..|+..|||..|...++.. ..+. .-.+......+|..+|..+...|. .++++.+++.|+++.++++.++
T Consensus 5 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~~~l~~l~~~y~---~i~~~~ia~~l~~~~~~vE~~l 81 (105)
T PF01399_consen 5 ELLRAFRSGDLQEFEEFLEKHSESLFKDPFLAEYVEQLKEKIRRRNLRQLSKPYS---SISISEIAKALQLSEEEVESIL 81 (105)
T ss_dssp HHHHHHHCT-HHHHHHHHHHTCHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHC-S---EEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHhc---ccchHHHHHHhccchHHHHHHH
Confidence 567889999999999999865 2222 235667778899999999998875 8999999999999987776665
Q ss_pred H
Q 000515 550 E 550 (1450)
Q Consensus 550 e 550 (1450)
.
T Consensus 82 ~ 82 (105)
T PF01399_consen 82 I 82 (105)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=93.01 E-value=0.75 Score=47.92 Aligned_cols=104 Identities=24% Similarity=0.230 Sum_probs=65.0
Q ss_pred cccccCcceEEEEeecCch--hHHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCcccceE
Q 000515 974 NDAVSGASAVLFLVSESIP--WKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVL 1051 (1450)
Q Consensus 974 ~~~~~GasailFlvsE~~~--~~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~I~s~l 1051 (1450)
.....+|.++||+++-+.+ +...+..|+.++.. +.-...|+||+.-=.|-.......+|++.|+|..+-+..-..+-
T Consensus 61 ~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~ 139 (167)
T cd04161 61 VNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQH-PRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCH 139 (167)
T ss_pred HHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcC-ccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEE
Confidence 3446799999999965443 55556677776654 22246787777665555444456789999999987544323344
Q ss_pred EEEecCCccCCCCCcccchHHHHhHHHHhhc
Q 000515 1052 VKFLVGDQQSSHSDEFFSDEQLREGLQWLAS 1082 (1450)
Q Consensus 1052 vvfl~~~~~~~~~~gf~sd~~L~~gl~WLA~ 1082 (1450)
+.......- .|=.-+.-|.+|++||..
T Consensus 140 ~~~~Sa~~g----~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 140 IEPCSAIEG----LGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EEEeEceeC----CCCccccCHHHHHHHHhc
Confidence 443433321 111224569999999964
No 11
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=91.01 E-value=1.6 Score=46.31 Aligned_cols=99 Identities=21% Similarity=0.277 Sum_probs=66.2
Q ss_pred cccccCcceEEEEeecCch--hHHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccC----cc
Q 000515 974 NDAVSGASAVLFLVSESIP--WKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKS----RV 1047 (1450)
Q Consensus 974 ~~~~~GasailFlvsE~~~--~~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~----~I 1047 (1450)
.....+|.++||+++-+.+ +...+..|..++.. ..-...|.||+.--.+....-..++|...|||.++..+ .+
T Consensus 79 ~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~ 157 (184)
T smart00178 79 KDYFPEVNGIVYLVDAYDKERFAESKRELDALLSD-EELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGV 157 (184)
T ss_pred HHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCC
Confidence 3446799999999977666 55556677776653 23346788888776665444467789999999987643 22
Q ss_pred cceEEEEecCCccCCCCCcccchHHHHhHHHHhhcc
Q 000515 1048 NRVLVKFLVGDQQSSHSDEFFSDEQLREGLQWLASE 1083 (1450)
Q Consensus 1048 ~s~lvvfl~~~~~~~~~~gf~sd~~L~~gl~WLA~~ 1083 (1450)
..+-|+...... ..-+.++++||.+.
T Consensus 158 ~~~~i~~~Sa~~----------~~g~~~~~~wl~~~ 183 (184)
T smart00178 158 RPLEVFMCSVVR----------RMGYGEGFKWLSQY 183 (184)
T ss_pred ceeEEEEeeccc----------CCChHHHHHHHHhh
Confidence 344444443333 23589999999764
No 12
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=86.32 E-value=3.7 Score=43.03 Aligned_cols=96 Identities=25% Similarity=0.288 Sum_probs=62.1
Q ss_pred cccccCcceEEEEeecCch--hHHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCcccceE
Q 000515 974 NDAVSGASAVLFLVSESIP--WKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVL 1051 (1450)
Q Consensus 974 ~~~~~GasailFlvsE~~~--~~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~I~s~l 1051 (1450)
.....|+.++||+++-+.+ +...+..|+.++.... ....|++|+.-=.|.......++|...||+..+...++ -
T Consensus 77 ~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~---~ 152 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTW---H 152 (174)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCce---E
Confidence 3446899999999976655 5455666777766533 34689888776555433334567888899876654332 2
Q ss_pred EEEecCCccCCCCCcccchHHHHhHHHHhhcc
Q 000515 1052 VKFLVGDQQSSHSDEFFSDEQLREGLQWLASE 1083 (1450)
Q Consensus 1052 vvfl~~~~~~~~~~gf~sd~~L~~gl~WLA~~ 1083 (1450)
++.+.+.. ..-+.+.+.||+++
T Consensus 153 ~~~~SA~~----------g~gi~e~~~~l~~~ 174 (174)
T cd04153 153 IQGCCALT----------GEGLPEGLDWIASR 174 (174)
T ss_pred EEecccCC----------CCCHHHHHHHHhcC
Confidence 33443333 13489999999875
No 13
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.33 E-value=3.1 Score=44.57 Aligned_cols=94 Identities=20% Similarity=0.265 Sum_probs=69.5
Q ss_pred ccCcceEEEEe--ecCchhHHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCcccceEEEE
Q 000515 977 VSGASAVLFLV--SESIPWKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVLVKF 1054 (1450)
Q Consensus 977 ~~GasailFlv--sE~~~~~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~I~s~lvvf 1054 (1450)
--|+-|+||++ ..+.-.+-+|..||+++ .=|.=-.+|+|||---++...--.-+.|.+-|+|.. .|=-.|.|..
T Consensus 82 y~gtqglIFV~Dsa~~dr~eeAr~ELh~ii-~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~---~r~~~W~vqp 157 (180)
T KOG0071|consen 82 YTGTQGLIFVVDSADRDRIEEARNELHRII-NDREMRDAIILILANKQDLPDAMKPQEIQDKLELER---IRDRNWYVQP 157 (180)
T ss_pred ccCCceEEEEEeccchhhHHHHHHHHHHHh-CCHhhhcceEEEEecCcccccccCHHHHHHHhcccc---ccCCccEeec
Confidence 45899999999 44566778999999965 346667899999998776655545688999999886 3334677765
Q ss_pred ecCCccCCCCCcccchHHHHhHHHHhhccC
Q 000515 1055 LVGDQQSSHSDEFFSDEQLREGLQWLASES 1084 (1450)
Q Consensus 1055 l~~~~~~~~~~gf~sd~~L~~gl~WLA~~~ 1084 (1450)
-.... -+-|-|||-||.+++
T Consensus 158 ~~a~~----------gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 158 SCALS----------GDGLKEGLSWLSNNL 177 (180)
T ss_pred ccccc----------chhHHHHHHHHHhhc
Confidence 43333 345899999998765
No 14
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=79.39 E-value=15 Score=38.14 Aligned_cols=96 Identities=18% Similarity=0.285 Sum_probs=57.8
Q ss_pred cccccCcceEEEEeecCch--hHHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCcccceE
Q 000515 974 NDAVSGASAVLFLVSESIP--WKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVL 1051 (1450)
Q Consensus 974 ~~~~~GasailFlvsE~~~--~~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~I~s~l 1051 (1450)
.....||.++||+++-+.+ +...+..++.++.. +.....|++|+.--.|-....+..+|...+++..+..- .+.
T Consensus 62 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~---~~~ 137 (159)
T cd04150 62 RHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNE-DELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNR---NWY 137 (159)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhc-HHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCC---CEE
Confidence 3347999999999976554 55556667776643 22345687665544443333345688888887765322 233
Q ss_pred EEEecCCccCCCCCcccchHHHHhHHHHhhcc
Q 000515 1052 VKFLVGDQQSSHSDEFFSDEQLREGLQWLASE 1083 (1450)
Q Consensus 1052 vvfl~~~~~~~~~~gf~sd~~L~~gl~WLA~~ 1083 (1450)
+..+.++.- .-+.+.++||+++
T Consensus 138 ~~~~Sak~g----------~gv~~~~~~l~~~ 159 (159)
T cd04150 138 IQATCATSG----------DGLYEGLDWLSNN 159 (159)
T ss_pred EEEeeCCCC----------CCHHHHHHHHhcC
Confidence 444443331 1288999999863
No 15
>PLN00223 ADP-ribosylation factor; Provisional
Probab=77.95 E-value=14 Score=39.46 Aligned_cols=94 Identities=19% Similarity=0.274 Sum_probs=57.9
Q ss_pred cccCcceEEEEeecCch--hHHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCcccceEEE
Q 000515 976 AVSGASAVLFLVSESIP--WKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVLVK 1053 (1450)
Q Consensus 976 ~~~GasailFlvsE~~~--~~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~I~s~lvv 1053 (1450)
-..||.++||+++-+.+ +...+..|+.++.. ......|++|+.-=.|-...-+.+++...|||..+..- .|.+.
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~-~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~---~~~~~ 156 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR---HWYIQ 156 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcC-HhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCC---ceEEE
Confidence 36899999999976644 44445556666543 12246788887654443333356788999998765332 23333
Q ss_pred EecCCccCCCCCcccchHHHHhHHHHhhcc
Q 000515 1054 FLVGDQQSSHSDEFFSDEQLREGLQWLASE 1083 (1450)
Q Consensus 1054 fl~~~~~~~~~~gf~sd~~L~~gl~WLA~~ 1083 (1450)
...+..-+ -+.++++||+..
T Consensus 157 ~~Sa~~g~----------gv~e~~~~l~~~ 176 (181)
T PLN00223 157 STCATSGE----------GLYEGLDWLSNN 176 (181)
T ss_pred eccCCCCC----------CHHHHHHHHHHH
Confidence 33333311 289999999864
No 16
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=77.79 E-value=16 Score=38.44 Aligned_cols=93 Identities=18% Similarity=0.306 Sum_probs=59.0
Q ss_pred ccCcceEEEEeecCch--hHHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCcccceEEEE
Q 000515 977 VSGASAVLFLVSESIP--WKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVLVKF 1054 (1450)
Q Consensus 977 ~~GasailFlvsE~~~--~~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~I~s~lvvf 1054 (1450)
..+|.++||+++-+.+ +...+..++.++.. ......|++|+.-=.|-...-+.++|...+|+..+.. + .|-+..
T Consensus 78 ~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~-~--~~~~~~ 153 (175)
T smart00177 78 YTNTQGLIFVVDSNDRDRIDEAREELHRMLNE-DELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRD-R--NWYIQP 153 (175)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHhhC-HhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCC-C--cEEEEE
Confidence 6899999999976554 66667778877654 2224577766555444322224578999999876543 2 233444
Q ss_pred ecCCccCCCCCcccchHHHHhHHHHhhcc
Q 000515 1055 LVGDQQSSHSDEFFSDEQLREGLQWLASE 1083 (1450)
Q Consensus 1055 l~~~~~~~~~~gf~sd~~L~~gl~WLA~~ 1083 (1450)
+.+.. ..-+.++++||+..
T Consensus 154 ~Sa~~----------g~gv~e~~~~l~~~ 172 (175)
T smart00177 154 TCATS----------GDGLYEGLTWLSNN 172 (175)
T ss_pred eeCCC----------CCCHHHHHHHHHHH
Confidence 44333 22478999999864
No 17
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.87 E-value=10 Score=42.08 Aligned_cols=96 Identities=25% Similarity=0.319 Sum_probs=63.9
Q ss_pred cccCcceEEEEeecCch--hHHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCcccceEEE
Q 000515 976 AVSGASAVLFLVSESIP--WKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVLVK 1053 (1450)
Q Consensus 976 ~~~GasailFlvsE~~~--~~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~I~s~lvv 1053 (1450)
--..+-+|||+|.-+.. ....|..|+.+|+-.- =...||||+.--.+=...-+-.+|-+.|+|++|-+ -.|-+-
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~-l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~---~~w~iq 156 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPE-LRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRS---RNWHIQ 156 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc-cCCceEEEEechhhccccCCHHHHHhHhhhhccCC---CCcEEe
Confidence 34567789999944432 3447888998665544 67889999987665333335688999999998877 223222
Q ss_pred EecCCccCCCCCcccchHHHHhHHHHhhccCC
Q 000515 1054 FLVGDQQSSHSDEFFSDEQLREGLQWLASESP 1085 (1450)
Q Consensus 1054 fl~~~~~~~~~~gf~sd~~L~~gl~WLA~~~P 1085 (1450)
.- -..+-+-|-|||.||.+..-
T Consensus 157 ~~----------~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 157 ST----------CAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred ec----------cccccccHHHHHHHHHHHHh
Confidence 11 11233568999999987643
No 18
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.17 E-value=48 Score=39.21 Aligned_cols=143 Identities=20% Similarity=0.357 Sum_probs=98.4
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhcccCCCCC-cChHHHHHHHHhcCHHHhcChhhhHHHH
Q 000515 398 AHLNIEQMNKTSVELFQMYDDHRKRGLIISTEKEFRGYYALLKLDKHPGYK-VEPAELSLDLAKMTPEIRQTPEVLFARS 476 (1450)
Q Consensus 398 ~qqnlEQLnKcL~SL~elYdD~r~~Gi~~pNEAEFrAY~LLl~L~d~p~~~-ve~~eL~~~L~qlp~eIr~sp~VqfAL~ 476 (1450)
.|+--.+|.++-+...+.|+-....| .|+.---.-|.+|-++--..+++ ..+++. . -..+.|+|.---+
T Consensus 240 MHlreg~fe~AhTDFFEAFKNYDEsG--spRRttCLKYLVLANMLmkS~iNPFDsQEA-------K-PyKNdPEIlAMTn 309 (440)
T KOG1464|consen 240 MHLREGEFEKAHTDFFEAFKNYDESG--SPRRTTCLKYLVLANMLMKSGINPFDSQEA-------K-PYKNDPEILAMTN 309 (440)
T ss_pred cccccchHHHHHhHHHHHHhcccccC--CcchhHHHHHHHHHHHHHHcCCCCCccccc-------C-CCCCCHHHHHHHH
Confidence 35666788888888777766554455 57777778888888764322221 011110 0 1345667665557
Q ss_pred HHHHHhhCcHHHHHHHHHh------c-cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhCCChHHHHHHH
Q 000515 477 VARACRTGNFIAFFRLARK------A-SYLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGMEEEDIESLL 549 (1450)
Q Consensus 477 V~~A~~~gNYvRFFRLlrs------a-pYL~ACLLe~~F~~VR~~AL~~L~kAy~k~~~iPLs~LarlL~FddEEa~eFc 549 (1450)
+..|+..++...|=+++++ . ||+ +--++-.+..||.+.|-.+.+-|. .+-+.+|++-|..+..|.++++
T Consensus 310 lv~aYQ~NdI~eFE~Il~~~~~~IM~DpFI-Reh~EdLl~niRTQVLlkLIkPYt---~i~Ipfis~~Lnv~~~dV~~LL 385 (440)
T KOG1464|consen 310 LVAAYQNNDIIEFERILKSNRSNIMDDPFI-REHIEDLLRNIRTQVLLKLIKPYT---NIGIPFISKELNVPEADVESLL 385 (440)
T ss_pred HHHHHhcccHHHHHHHHHhhhccccccHHH-HHHHHHHHHHHHHHHHHHHhcccc---ccCchhhHhhcCCCHHHHHHHH
Confidence 8889999999999999984 2 444 444567788999999999999885 5667789999999987777776
Q ss_pred HHcCC
Q 000515 550 EYHGF 554 (1450)
Q Consensus 550 e~hGL 554 (1450)
-.+=|
T Consensus 386 V~~IL 390 (440)
T KOG1464|consen 386 VSCIL 390 (440)
T ss_pred HHHHh
Confidence 65544
No 19
>KOG3252 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.51 E-value=19 Score=40.24 Aligned_cols=96 Identities=13% Similarity=0.104 Sum_probs=74.0
Q ss_pred cCHHHhcChhhhHHHHHHHHHhhCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhCC
Q 000515 461 MTPEIRQTPEVLFARSVARACRTGNFIAFFRLARKASYLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGM 540 (1450)
Q Consensus 461 lp~eIr~sp~VqfAL~V~~A~~~gNYvRFFRLlrsapYL~ACLLe~~F~~VR~~AL~~L~kAy~k~~~iPLs~LarlL~F 540 (1450)
+++.......++.-+.+..-+.+++|..|+.-...-+-|..- +--|=..||..|-..+.-+|. .|+-..|+++||-
T Consensus 88 i~~~~~~ee~~r~ii~L~~~LEt~~Fq~FW~~~~~N~~mle~-itGFedsvr~yachvv~iTyQ---kI~k~lLaellG~ 163 (217)
T KOG3252|consen 88 IDERVQMEEPFRSIIDLGDYLETCRFQQFWQEADENRDMLEG-ITGFEDSVRKYACHVVGITYQ---KIDKWLLAELLGG 163 (217)
T ss_pred cCHHHhcccchhHHHhHHHHHhhchHHHHhhhhccchHHhcC-CCcHHHHHHHHHHHheechHh---hchHHHHHHhhCc
Confidence 566667777888888888888899999999765543322222 223446788888888888884 8999999999985
Q ss_pred -ChHHHHHHHHHcCCeeccCC
Q 000515 541 -EEEDIESLLEYHGFSIKEFE 560 (1450)
Q Consensus 541 -ddEEa~eFce~hGL~v~~~e 560 (1450)
+|.+++.+.+.+|-..++.|
T Consensus 164 ~sDs~le~~~~~~GW~a~e~G 184 (217)
T KOG3252|consen 164 LSDSQLEVWMTKYGWIADESG 184 (217)
T ss_pred ccHHHHHHHHHHccceecCCc
Confidence 57889999999999998877
No 20
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=65.67 E-value=35 Score=34.46 Aligned_cols=95 Identities=20% Similarity=0.261 Sum_probs=56.5
Q ss_pred ccccCcceEEEEeecCchh--HHHHHHHHHHHhhcC-CCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCcccceE
Q 000515 975 DAVSGASAVLFLVSESIPW--KLQKVQLNKLVMSIP-SGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVL 1051 (1450)
Q Consensus 975 ~~~~GasailFlvsE~~~~--~~~r~~L~~ll~S~p-~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~I~s~l 1051 (1450)
....++.++||+++-+.+- ...+.++..++.... .+..+|++|+.-=.|.........+...|++..+... .+.
T Consensus 64 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~---~~~ 140 (162)
T cd04157 64 HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDK---PWH 140 (162)
T ss_pred HHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCc---eEE
Confidence 3467999999999765543 233445666555422 2457998887665554333334667778887755222 233
Q ss_pred EEEecCCccCCCCCcccchHHHHhHHHHhhc
Q 000515 1052 VKFLVGDQQSSHSDEFFSDEQLREGLQWLAS 1082 (1450)
Q Consensus 1052 vvfl~~~~~~~~~~gf~sd~~L~~gl~WLA~ 1082 (1450)
++.+.... ..-+.+.+.||+.
T Consensus 141 ~~~~Sa~~----------g~gv~~~~~~l~~ 161 (162)
T cd04157 141 IFASNALT----------GEGLDEGVQWLQA 161 (162)
T ss_pred EEEeeCCC----------CCchHHHHHHHhc
Confidence 44443333 2347888999874
No 21
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=63.53 E-value=36 Score=36.34 Aligned_cols=109 Identities=14% Similarity=0.181 Sum_probs=61.2
Q ss_pred EEEEeeecccc-cc----cccccCcceEEEEeecCch--hHHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHH
Q 000515 961 CFSFVKEMEFN-HV----NDAVSGASAVLFLVSESIP--WKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVI 1033 (1450)
Q Consensus 961 c~~vvrd~~~~-~~----~~~~~GasailFlvsE~~~--~~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i 1033 (1450)
|...+-|+.-+ .. .....+|.++||+++-+.+ ....+.++..++..- .-...|++|+.-=.|-........|
T Consensus 61 ~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~i 139 (182)
T PTZ00133 61 LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSED-ELRDAVLLVFANKQDLPNAMSTTEV 139 (182)
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCH-hhcCCCEEEEEeCCCCCCCCCHHHH
Confidence 44455676432 22 2347899999999976543 444455666665432 1235676665433332222245678
Q ss_pred HhhhCCCccccCcccceEEEEecCCccCCCCCcccchHHHHhHHHHhhcc
Q 000515 1034 INELGLSELDKSRVNRVLVKFLVGDQQSSHSDEFFSDEQLREGLQWLASE 1083 (1450)
Q Consensus 1034 ~~~LgL~~i~~~~I~s~lvvfl~~~~~~~~~~gf~sd~~L~~gl~WLA~~ 1083 (1450)
...||+..+... .+-+..+.+.. ..-+.+.+.||++.
T Consensus 140 ~~~l~~~~~~~~---~~~~~~~Sa~t----------g~gv~e~~~~l~~~ 176 (182)
T PTZ00133 140 TEKLGLHSVRQR---NWYIQGCCATT----------AQGLYEGLDWLSAN 176 (182)
T ss_pred HHHhCCCcccCC---cEEEEeeeCCC----------CCCHHHHHHHHHHH
Confidence 899998755432 22222222222 23488999999863
No 22
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=62.87 E-value=43 Score=34.18 Aligned_cols=97 Identities=19% Similarity=0.267 Sum_probs=53.2
Q ss_pred ccccCcceEEEEeecCch--hHHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCcccceEE
Q 000515 975 DAVSGASAVLFLVSESIP--WKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVLV 1052 (1450)
Q Consensus 975 ~~~~GasailFlvsE~~~--~~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~I~s~lv 1052 (1450)
....++.++||+++-+.+ +...+..+..++.. .....+|.+|+.--.|.........+...+.... .......+-+
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 146 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRN-EALEGVPLLILANKQDLPDALSVEEIKEVFQDKA-EEIGRRDCLV 146 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEEccccccCCCHHHHHHHhcccc-ccccCCceEE
Confidence 447899999999976554 44445566665543 3345789877766555433333345554443321 0111122333
Q ss_pred EEecCCccCCCCCcccchHHHHhHHHHhhcc
Q 000515 1053 KFLVGDQQSSHSDEFFSDEQLREGLQWLASE 1083 (1450)
Q Consensus 1053 vfl~~~~~~~~~~gf~sd~~L~~gl~WLA~~ 1083 (1450)
+.+.+.. ..-+.+.+.||+.+
T Consensus 147 ~~~Sa~~----------g~gv~e~~~~l~~~ 167 (167)
T cd04160 147 LPVSALE----------GTGVREGIEWLVER 167 (167)
T ss_pred EEeeCCC----------CcCHHHHHHHHhcC
Confidence 3333332 23467889999864
No 23
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=62.23 E-value=45 Score=34.30 Aligned_cols=94 Identities=16% Similarity=0.321 Sum_probs=56.9
Q ss_pred ccccCcceEEEEeecCch--hHHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCcccceEE
Q 000515 975 DAVSGASAVLFLVSESIP--WKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVLV 1052 (1450)
Q Consensus 975 ~~~~GasailFlvsE~~~--~~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~I~s~lv 1052 (1450)
....++.++||+++-+.+ +...+..+..++... .....|.+++.--.+.......++|.+.+++.++... .|-+
T Consensus 77 ~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~---~~~~ 152 (173)
T cd04155 77 NYFENTDCLIYVIDSADKKRLEEAGAELVELLEEE-KLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDR---TWHI 152 (173)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCC---eEEE
Confidence 345788899999866543 444455666665543 2346898887765554333345678888888765332 2223
Q ss_pred EEecCCccCCCCCcccchHHHHhHHHHhhc
Q 000515 1053 KFLVGDQQSSHSDEFFSDEQLREGLQWLAS 1082 (1450)
Q Consensus 1053 vfl~~~~~~~~~~gf~sd~~L~~gl~WLA~ 1082 (1450)
+.+.+.. ..-+.+++.||+.
T Consensus 153 ~~~Sa~~----------~~gi~~~~~~l~~ 172 (173)
T cd04155 153 QACSAKT----------GEGLQEGMNWVCK 172 (173)
T ss_pred EEeECCC----------CCCHHHHHHHHhc
Confidence 3333322 1238899999974
No 24
>smart00753 PAM PCI/PINT associated module.
Probab=60.85 E-value=19 Score=34.10 Aligned_cols=43 Identities=19% Similarity=0.358 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhCCChHHHHHHHH
Q 000515 505 HAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGMEEEDIESLLE 550 (1450)
Q Consensus 505 e~~F~~VR~~AL~~L~kAy~k~~~iPLs~LarlL~FddEEa~eFce 550 (1450)
..+...+|..+|..+++.|. .++++.|++.|+++.++++.++.
T Consensus 4 ~~l~~~~~~~~l~~l~~~y~---~i~~~~i~~~~~l~~~~vE~~i~ 46 (88)
T smart00753 4 ERLQRKIRLTNLLQLSEPYS---SISLSDLAKLLGLSVPEVEKLVS 46 (88)
T ss_pred HHHHHHHHHHHHHHHhHHhc---eeeHHHHHHHhCcCHHHHHHHHH
Confidence 34667899999999999885 89999999999999766665544
No 25
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15. Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.
Probab=60.85 E-value=19 Score=34.10 Aligned_cols=43 Identities=19% Similarity=0.358 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhCCChHHHHHHHH
Q 000515 505 HAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGMEEEDIESLLE 550 (1450)
Q Consensus 505 e~~F~~VR~~AL~~L~kAy~k~~~iPLs~LarlL~FddEEa~eFce 550 (1450)
..+...+|..+|..+++.|. .++++.|++.|+++.++++.++.
T Consensus 4 ~~l~~~~~~~~l~~l~~~y~---~i~~~~i~~~~~l~~~~vE~~i~ 46 (88)
T smart00088 4 ERLQRKIRLTNLLQLSEPYS---SISLSDLAKLLGLSVPEVEKLVS 46 (88)
T ss_pred HHHHHHHHHHHHHHHhHHhc---eeeHHHHHHHhCcCHHHHHHHHH
Confidence 34667899999999999885 89999999999999766665544
No 26
>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.10 E-value=1.8e+02 Score=31.87 Aligned_cols=97 Identities=19% Similarity=0.289 Sum_probs=75.5
Q ss_pred HhcCHHHhc-ChhhhHHHHHHHHHhhCcHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHH
Q 000515 459 AKMTPEIRQ-TPEVLFARSVARACRTGNFIAFFRLARK--ASYLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVG 535 (1450)
Q Consensus 459 ~qlp~eIr~-sp~VqfAL~V~~A~~~gNYvRFFRLlrs--apYL~ACLLe~~F~~VR~~AL~~L~kAy~k~~~iPLs~La 535 (1450)
.++|+.|.+ .|++--+..|-.-+.+.+|...+.-++- -+--..-+|..+-.-.|+++..-+..+|. .|-.++++
T Consensus 63 KRIP~AIKe~k~El~aaWgiGQkiWq~Df~GiYeaI~~~dWSeeak~imaAf~D~~~kR~FaLl~qAYs---sI~~~D~A 139 (197)
T KOG4414|consen 63 KRIPPAIKEAKPELGAAWGIGQKIWQHDFAGIYEAINAHDWSEEAKDIMAAFRDATRKRAFALLLQAYS---SIIADDFA 139 (197)
T ss_pred HhCCHHHhhcCchhhhhhhhhHHHHhcccchHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 457888885 5677777777777778888888877763 24444556667777789999999999996 88999999
Q ss_pred HHhCCChHHHHHHHHHcCCeecc
Q 000515 536 RWLGMEEEDIESLLEYHGFSIKE 558 (1450)
Q Consensus 536 rlL~FddEEa~eFce~hGL~v~~ 558 (1450)
-.||+..+|+....-..|-.++.
T Consensus 140 ~FlGl~~ddAtk~ilEnGWqaDa 162 (197)
T KOG4414|consen 140 AFLGLPEDDATKGILENGWQADA 162 (197)
T ss_pred HHhCCCHHHHHHHHHHcccchhh
Confidence 99999998888777777877654
No 27
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=56.02 E-value=62 Score=34.02 Aligned_cols=94 Identities=20% Similarity=0.288 Sum_probs=52.8
Q ss_pred cccCcceEEEEeecCch--hHHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCcccceEEE
Q 000515 976 AVSGASAVLFLVSESIP--WKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVLVK 1053 (1450)
Q Consensus 976 ~~~GasailFlvsE~~~--~~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~I~s~lvv 1053 (1450)
...+|.++||+++=+.+ ......++..++..- .-...|++|+.-=.|-......++|...+++..+-.. .+-++
T Consensus 73 ~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~---~~~~~ 148 (168)
T cd04149 73 YYTGTQGLIFVVDSADRDRIDEARQELHRIINDR-EMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDR---NWYVQ 148 (168)
T ss_pred HhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCH-hhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCC---cEEEE
Confidence 46899999999965543 444555666665431 1134675555443332222245678888877654322 22333
Q ss_pred EecCCccCCCCCcccchHHHHhHHHHhhcc
Q 000515 1054 FLVGDQQSSHSDEFFSDEQLREGLQWLASE 1083 (1450)
Q Consensus 1054 fl~~~~~~~~~~gf~sd~~L~~gl~WLA~~ 1083 (1450)
.+.++. ..-+.+++.||++.
T Consensus 149 ~~SAk~----------g~gv~~~~~~l~~~ 168 (168)
T cd04149 149 PSCATS----------GDGLYEGLTWLSSN 168 (168)
T ss_pred EeeCCC----------CCChHHHHHHHhcC
Confidence 343333 12377999999863
No 28
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=53.64 E-value=1.1e+02 Score=32.14 Aligned_cols=98 Identities=20% Similarity=0.328 Sum_probs=59.0
Q ss_pred cccccCcceEEEEeecCch--hHHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCc-----
Q 000515 974 NDAVSGASAVLFLVSESIP--WKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSR----- 1046 (1450)
Q Consensus 974 ~~~~~GasailFlvsE~~~--~~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~----- 1046 (1450)
.....++.++||+++-+.+ ....+..+..++.. ......|++|+.-=.|.......+++...|++.++-.++
T Consensus 81 ~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (190)
T cd00879 81 KDYFPEVDGIVFLVDAADPERFQESKEELDSLLSD-EELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLK 159 (190)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcC-ccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccccccccccccc
Confidence 3456889999999965543 22334456665543 223568988886655544344678899999988764432
Q ss_pred ---ccceEEEEecCCccCCCCCcccchHHHHhHHHHhhc
Q 000515 1047 ---VNRVLVKFLVGDQQSSHSDEFFSDEQLREGLQWLAS 1082 (1450)
Q Consensus 1047 ---I~s~lvvfl~~~~~~~~~~gf~sd~~L~~gl~WLA~ 1082 (1450)
...+.++...++. ..-+.++++||+.
T Consensus 160 ~~~~~~~~~~~~Sa~~----------~~gv~e~~~~l~~ 188 (190)
T cd00879 160 VSGIRPIEVFMCSVVK----------RQGYGEAFRWLSQ 188 (190)
T ss_pred ccCceeEEEEEeEecC----------CCChHHHHHHHHh
Confidence 2222222222222 1238899999986
No 29
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=52.15 E-value=1.1e+02 Score=31.97 Aligned_cols=103 Identities=22% Similarity=0.184 Sum_probs=58.2
Q ss_pred ccccCcceEEEEeecCch--hHHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCcccceEE
Q 000515 975 DAVSGASAVLFLVSESIP--WKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVLV 1052 (1450)
Q Consensus 975 ~~~~GasailFlvsE~~~--~~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~I~s~lv 1052 (1450)
....+|.|+||+++=+.+ ....+..+..++.... ....|++|+.-=.|....-..+.+...+.+.++...+ .+-+
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~ 138 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKE-LRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGR--SWYI 138 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChh-hCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCC--cEEE
Confidence 456899999999975554 4445666777665422 2346876655444432222345566666655442111 1222
Q ss_pred EEecCCccCCCCCcccchHHHHhHHHHhhccCCCCcce
Q 000515 1053 KFLVGDQQSSHSDEFFSDEQLREGLQWLASESPLQPVV 1090 (1450)
Q Consensus 1053 vfl~~~~~~~~~~gf~sd~~L~~gl~WLA~~~P~qP~l 1090 (1450)
....++. ..-+.+++.||+...+..+-|
T Consensus 139 ~~~Sa~~----------g~gv~~~f~~l~~~~~~~~~~ 166 (169)
T cd04158 139 QGCDARS----------GMGLYEGLDWLSRQLVAAGVL 166 (169)
T ss_pred EeCcCCC----------CCCHHHHHHHHHHHHhhcccc
Confidence 2222222 123899999999877666554
No 30
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=51.20 E-value=2.2e+02 Score=34.82 Aligned_cols=146 Identities=10% Similarity=0.171 Sum_probs=86.6
Q ss_pred cHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhcccC-------------CCC---CcCh---HHHHHH---H
Q 000515 401 NIEQMNKTSVELFQMYDDHRKRGLIISTEKEFRGYYALLKLDKH-------------PGY---KVEP---AELSLD---L 458 (1450)
Q Consensus 401 nlEQLnKcL~SL~elYdD~r~~Gi~~pNEAEFrAY~LLl~L~d~-------------p~~---~ve~---~eL~~~---L 458 (1450)
|..-.++.+...+.+|+ +|+...+.--...|+-||.+.-+ +.| ++.+ .-.... +
T Consensus 156 D~~lV~~~iekak~liE----~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~ 231 (393)
T KOG0687|consen 156 DHDLVTESIEKAKSLIE----EGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGL 231 (393)
T ss_pred cHHHHHHHHHHHHHHHH----hCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHhh
Confidence 34455666667777776 36666666677777777765221 111 1100 000000 0
Q ss_pred H-----hcCHHHhcChhhhHH-------HHHHHHHhhCcHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHH
Q 000515 459 A-----KMTPEIRQTPEVLFA-------RSVARACRTGNFIAFFRLARK-------ASYLQACLMHAHFSKLRTQALASL 519 (1450)
Q Consensus 459 ~-----qlp~eIr~sp~VqfA-------L~V~~A~~~gNYvRFFRLlrs-------apYL~ACLLe~~F~~VR~~AL~~L 519 (1450)
. .+...|..+|+|+-. .++..++-..||..||.-+.. ...+..--...|...||.++-..+
T Consensus 232 i~leR~dlktKVi~~~Evl~vl~~l~~~~q~l~SLY~C~Y~~Ff~~L~~~~~~~lk~D~~l~~h~~yyvREMR~rvY~Ql 311 (393)
T KOG0687|consen 232 IALERVDLKTKVIKCPEVLEVLHKLPSVSQLLNSLYECDYSDFFNDLAAVEAKQLKDDRYLGPHYRYYVREMRRRVYAQL 311 (393)
T ss_pred heeccchHHhhhcCcHHHHHHhhcCchHHHHHHHHHhccHHHHHHHHHHHHHHhhccchhcchHHHHHHHHHHHHHHHHH
Confidence 0 122345556665433 244556678899999975531 123333334556678999999999
Q ss_pred HhhccCCCCCCHHHHHHHhCCC----hHHHHHHHHHcC
Q 000515 520 YSGLQNNQGLPVAHVGRWLGME----EEDIESLLEYHG 553 (1450)
Q Consensus 520 ~kAy~k~~~iPLs~LarlL~Fd----dEEa~eFce~hG 553 (1450)
--+|. .+.++.+++-+|.+ |.|+-.|.-.--
T Consensus 312 LESYr---sl~l~~MA~aFgVSVefiDreL~rFI~~gr 346 (393)
T KOG0687|consen 312 LESYR---SLTLESMAKAFGVSVEFIDRELGRFIAAGR 346 (393)
T ss_pred HHHHH---HHHHHHHHHHhCchHHHHHhHHHHhhccCc
Confidence 99986 78999999999987 456667765433
No 31
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.65 E-value=2.3e+02 Score=33.68 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=41.3
Q ss_pred CCCCCCCCCcccccccccccCCCCCCCCCcccCCCCCCCCccccccccccc
Q 000515 34 NDSKRPALSSSTWDDHAEFLGNYTNSLPQQDQSRALPHANSYDDERSFMGQ 84 (1450)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1450)
.|-+.+.+-+.|=-.++.++-.+.-..-||+.....|+.+.|+++-.|.+.
T Consensus 174 ~~~s~d~~P~~tGp~~~syp~Py~p~p~~q~p~p~~p~~~~yiS~~~S~ns 224 (338)
T KOG0917|consen 174 EDASADSLPTQTGPTQPSYPSPYDPSPYHQDPMPSGPYTGIYISHEPSPNS 224 (338)
T ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeecccCccc
Confidence 455566677777777888888888888999999999999999998877653
No 32
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=50.42 E-value=86 Score=32.67 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=55.5
Q ss_pred cccCcceEEEEeecCch--hHHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCcccceEEE
Q 000515 976 AVSGASAVLFLVSESIP--WKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVLVK 1053 (1450)
Q Consensus 976 ~~~GasailFlvsE~~~--~~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~I~s~lvv 1053 (1450)
...++.++||+++-+-+ +...+.+++.++.. ......|.+|+.-=.|.......+.+...+++..+.... +-++
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~---~~~~ 153 (173)
T cd04154 78 YFESTDALIWVVDSSDRLRLDDCKRELKELLQE-ERLAGATLLILANKQDLPGALSEEEIREALELDKISSHH---WRIQ 153 (173)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCc---eEEE
Confidence 46789999999976665 44445567766642 334578888776544432222446677777765433322 2233
Q ss_pred EecCCccCCCCCcccchHHHHhHHHHhhcc
Q 000515 1054 FLVGDQQSSHSDEFFSDEQLREGLQWLASE 1083 (1450)
Q Consensus 1054 fl~~~~~~~~~~gf~sd~~L~~gl~WLA~~ 1083 (1450)
.+.+.. ..-+.+.+.||+++
T Consensus 154 ~~Sa~~----------g~gi~~l~~~l~~~ 173 (173)
T cd04154 154 PCSAVT----------GEGLLQGIDWLVDD 173 (173)
T ss_pred eccCCC----------CcCHHHHHHHHhcC
Confidence 333322 23477888998764
No 33
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=50.17 E-value=1.3e+02 Score=29.65 Aligned_cols=95 Identities=20% Similarity=0.313 Sum_probs=55.5
Q ss_pred cccccCcceEEEEeecCchh--HHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCcccceE
Q 000515 974 NDAVSGASAVLFLVSESIPW--KLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVL 1051 (1450)
Q Consensus 974 ~~~~~GasailFlvsE~~~~--~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~I~s~l 1051 (1450)
.....++.++||+++-+.+. ...+..++.++.. ..-...|++|+.--.+.......+.+...+++..+....+..
T Consensus 62 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-- 138 (159)
T cd04159 62 ERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEK-PSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSC-- 138 (159)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEE--
Confidence 45567899999999766543 4445567776553 333568987766655543333335677788877664433332
Q ss_pred EEEecCCccCCCCCcccchHHHHhHHHHhhc
Q 000515 1052 VKFLVGDQQSSHSDEFFSDEQLREGLQWLAS 1082 (1450)
Q Consensus 1052 vvfl~~~~~~~~~~gf~sd~~L~~gl~WLA~ 1082 (1450)
+++.... -.-+.+.+.||+.
T Consensus 139 -~~~Sa~~----------~~gi~~l~~~l~~ 158 (159)
T cd04159 139 -YSISCKE----------KTNIDIVLDWLIK 158 (159)
T ss_pred -EEEEecc----------CCChHHHHHHHhh
Confidence 2222222 1236677788764
No 34
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=49.76 E-value=1.4e+02 Score=30.30 Aligned_cols=94 Identities=17% Similarity=0.169 Sum_probs=56.4
Q ss_pred cccCcceEEEEeecCchh--HHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCcccceEEE
Q 000515 976 AVSGASAVLFLVSESIPW--KLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVLVK 1053 (1450)
Q Consensus 976 ~~~GasailFlvsE~~~~--~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~I~s~lvv 1053 (1450)
...++.++||+++-+.+. ..-+.++..++.. +.-...|.+|+.-=.|-......++|...+++..+...+. +-++
T Consensus 64 ~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~ 140 (160)
T cd04156 64 YLENTDGLVYVVDSSDEARLDESQKELKHILKN-EHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRD--WYVQ 140 (160)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHhc-hhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCc--EEEE
Confidence 477899999999877775 3334455555543 2235689888877665433334567777877765544321 1222
Q ss_pred EecCCccCCCCCcccchHHHHhHHHHhhc
Q 000515 1054 FLVGDQQSSHSDEFFSDEQLREGLQWLAS 1082 (1450)
Q Consensus 1054 fl~~~~~~~~~~gf~sd~~L~~gl~WLA~ 1082 (1450)
...+.. .+-+.+.++||++
T Consensus 141 ~~Sa~~----------~~gv~~~~~~i~~ 159 (160)
T cd04156 141 PCSAVT----------GEGLAEAFRKLAS 159 (160)
T ss_pred eccccc----------CCChHHHHHHHhc
Confidence 332222 2347788888874
No 35
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=47.95 E-value=50 Score=36.64 Aligned_cols=91 Identities=27% Similarity=0.403 Sum_probs=58.4
Q ss_pred CcceEEEEeecCchhHHH--HHHHHHHHh-hcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCcccceEEEEe
Q 000515 979 GASAVLFLVSESIPWKLQ--KVQLNKLVM-SIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVLVKFL 1055 (1450)
Q Consensus 979 GasailFlvsE~~~~~~~--r~~L~~ll~-S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~I~s~lvvfl 1055 (1450)
.+-|+||+|.-+.+-.+| +..|..||- .--.| -|+|||..-.+-.--=..++|.-.|+|.+|.++ .+|-++--
T Consensus 83 stdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG--~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks--~~~~l~~c 158 (185)
T KOG0073|consen 83 STDGLIWVVDSSDRMRMQECKQELTELLVEERLAG--APLLVLANKQDLPGALSLEEISKALDLEELAKS--HHWRLVKC 158 (185)
T ss_pred ccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcC--CceEEEEecCcCccccCHHHHHHhhCHHHhccc--cCceEEEE
Confidence 466899999777777665 344555443 22333 578888764432211246788889999999744 35555544
Q ss_pred cCCccCCCCCcccchHHHHhHHHHhhcc
Q 000515 1056 VGDQQSSHSDEFFSDEQLREGLQWLASE 1083 (1450)
Q Consensus 1056 ~~~~~~~~~~gf~sd~~L~~gl~WLA~~ 1083 (1450)
.+. .-+.|-+|+.||...
T Consensus 159 s~~----------tge~l~~gidWL~~~ 176 (185)
T KOG0073|consen 159 SAV----------TGEDLLEGIDWLCDD 176 (185)
T ss_pred ecc----------ccccHHHHHHHHHHH
Confidence 332 345699999999764
No 36
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=33.60 E-value=3.3e+02 Score=28.99 Aligned_cols=109 Identities=19% Similarity=0.158 Sum_probs=59.9
Q ss_pred EEEEeeecccc-cc----cccccCcceEEEEeecCch--hHHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHH
Q 000515 961 CFSFVKEMEFN-HV----NDAVSGASAVLFLVSESIP--WKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVI 1033 (1450)
Q Consensus 961 c~~vvrd~~~~-~~----~~~~~GasailFlvsE~~~--~~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i 1033 (1450)
|-..+.|+.-+ .. .....+|.++||+++-+.+ +...+..+..++.. ......|.+|+.-=.|....-...++
T Consensus 52 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~-~~~~~~p~iiv~NK~D~~~~~~~~~~ 130 (183)
T cd04152 52 ITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRF-SENQGVPVLVLANKQDLPNALSVSEV 130 (183)
T ss_pred eEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhh-hhcCCCcEEEEEECcCccccCCHHHH
Confidence 44455576432 12 2235689999999976554 44444455554443 33456898777764443322233456
Q ss_pred HhhhCCCccccCcccceEEEEecCCccCCCCCcccchHHHHhHHHHhhc
Q 000515 1034 INELGLSELDKSRVNRVLVKFLVGDQQSSHSDEFFSDEQLREGLQWLAS 1082 (1450)
Q Consensus 1034 ~~~LgL~~i~~~~I~s~lvvfl~~~~~~~~~~gf~sd~~L~~gl~WLA~ 1082 (1450)
...+++.++...+. +-++++.+... .-+.+.+.||+.
T Consensus 131 ~~~~~~~~~~~~~~--~~~~~~SA~~~----------~gi~~l~~~l~~ 167 (183)
T cd04152 131 EKLLALHELSASTP--WHVQPACAIIG----------EGLQEGLEKLYE 167 (183)
T ss_pred HHHhCccccCCCCc--eEEEEeecccC----------CCHHHHHHHHHH
Confidence 66677665433221 23445544432 237788888864
No 37
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.72 E-value=48 Score=36.92 Aligned_cols=92 Identities=25% Similarity=0.363 Sum_probs=59.3
Q ss_pred cceEEEEeecCch--hHHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCccc--------c
Q 000515 980 ASAVLFLVSESIP--WKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVN--------R 1049 (1450)
Q Consensus 980 asailFlvsE~~~--~~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~I~--------s 1049 (1450)
+.||+|||.--.. .--.|..|.+ |.+.-+=..+|.|||...-+...-....+.--.|||....++++. +
T Consensus 88 v~~iv~lvda~d~er~~es~~eld~-ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~r 166 (193)
T KOG0077|consen 88 VDAIVYLVDAYDQERFAESKKELDA-LLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVR 166 (193)
T ss_pred hceeEeeeehhhHHHhHHHHHHHHH-HHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCC
Confidence 4578888822111 1113455665 456666678999999987666555567778888899888887653 3
Q ss_pred eEEEEecCCccCCCCCcccchHHHHhHHHHhh
Q 000515 1050 VLVKFLVGDQQSSHSDEFFSDEQLREGLQWLA 1081 (1450)
Q Consensus 1050 ~lvvfl~~~~~~~~~~gf~sd~~L~~gl~WLA 1081 (1450)
-+.||-..-+..+ | ..+|.+||+
T Consensus 167 p~evfmcsi~~~~---g------y~e~fkwl~ 189 (193)
T KOG0077|consen 167 PLEVFMCSIVRKM---G------YGEGFKWLS 189 (193)
T ss_pred eEEEEEEEEEccC---c------cceeeeehh
Confidence 4566665443222 2 678999986
No 38
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=28.61 E-value=1.9e+02 Score=30.24 Aligned_cols=68 Identities=25% Similarity=0.365 Sum_probs=45.8
Q ss_pred ccccCcceEEEEeecCchh--HHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccC
Q 000515 975 DAVSGASAVLFLVSESIPW--KLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKS 1045 (1450)
Q Consensus 975 ~~~~GasailFlvsE~~~~--~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~ 1045 (1450)
....||.++||+++-+.+- ...+.++..++... ...|.+|+.--.|.......++|.+.+++..+.+.
T Consensus 63 ~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~---~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~ 132 (164)
T cd04162 63 RYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP---PDLPLVVLANKQDLPAARSVQEIHKELELEPIARG 132 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC---CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCC
Confidence 4578999999999766543 44556677776543 46788766555554333345678888999888554
No 39
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=28.52 E-value=3.7e+02 Score=27.19 Aligned_cols=94 Identities=24% Similarity=0.318 Sum_probs=56.1
Q ss_pred ccccCcceEEEEeecCchh--HHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCcccceEE
Q 000515 975 DAVSGASAVLFLVSESIPW--KLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVLV 1052 (1450)
Q Consensus 975 ~~~~GasailFlvsE~~~~--~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~I~s~lv 1052 (1450)
....++.++||+++-..+. ......+..++.... ...+|++|+.--.+........++..++++...-... +-+
T Consensus 62 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~---~~~ 137 (158)
T cd00878 62 HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRR---WHI 137 (158)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCc---EEE
Confidence 3457899999999776653 223445666666554 4578999987766654444455777777765322211 233
Q ss_pred EEecCCccCCCCCcccchHHHHhHHHHhhc
Q 000515 1053 KFLVGDQQSSHSDEFFSDEQLREGLQWLAS 1082 (1450)
Q Consensus 1053 vfl~~~~~~~~~~gf~sd~~L~~gl~WLA~ 1082 (1450)
+.+.... ..-+.+.+.||++
T Consensus 138 ~~~Sa~~----------~~gv~~~~~~l~~ 157 (158)
T cd00878 138 QPCSAVT----------GDGLDEGLDWLLQ 157 (158)
T ss_pred EEeeCCC----------CCCHHHHHHHHhh
Confidence 3343332 2356778888865
No 40
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=26.87 E-value=3.8e+02 Score=33.04 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHhhCcHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCHHHHHHHhCCChHHHH
Q 000515 471 VLFARSVARACRTGNFIAFFRLARK---ASYLQACLMHAHFSKLRTQALASLYSGLQ-NNQGLPVAHVGRWLGMEEEDIE 546 (1450)
Q Consensus 471 VqfAL~V~~A~~~gNYvRFFRLlrs---apYL~ACLLe~~F~~VR~~AL~~L~kAy~-k~~~iPLs~LarlL~FddEEa~ 546 (1450)
.+.=.++..||..||..+|++|.+. .|-|.+.-. ..-.++|.-||-.|+..-+ +...++++.+++......++++
T Consensus 234 ~eWL~dll~Afn~Gdl~~f~~l~~~~~~~p~L~~~e~-~L~qKI~LmaLiEi~F~rpa~~R~lsf~~Ia~~tkip~~eVE 312 (380)
T KOG2908|consen 234 REWLKDLLIAFNSGDLKRFESLKGVWGKQPDLASNED-FLLQKIRLLALIEITFSRPANERTLSFKEIAEATKIPNKEVE 312 (380)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhccCchHHHHHH-HHHHHHHHHHHHHHHhcCcchhccccHHHHHHHhCCCHHHHH
Confidence 3455678899999999999999984 466655432 3446788888877765532 3467999999999999876654
Q ss_pred H-HHHHcCCe
Q 000515 547 S-LLEYHGFS 555 (1450)
Q Consensus 547 e-Fce~hGL~ 555 (1450)
- .+++.++-
T Consensus 313 ~LVMKAlslg 322 (380)
T KOG2908|consen 313 LLVMKALSLG 322 (380)
T ss_pred HHHHHHHhcc
Confidence 2 35666663
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=26.77 E-value=4.6e+02 Score=33.34 Aligned_cols=89 Identities=18% Similarity=0.287 Sum_probs=50.4
Q ss_pred hhhcHHHHHH----------HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhcccCCCCCcChHHHHH-----------
Q 000515 398 AHLNIEQMNK----------TSVELFQMYDDHRKRGLIISTEKEFRGYYALLKLDKHPGYKVEPAELSL----------- 456 (1450)
Q Consensus 398 ~qqnlEQLnK----------cL~SL~elYdD~r~~Gi~~pNEAEFrAY~LLl~L~d~p~~~ve~~eL~~----------- 456 (1450)
+.|-+|-+.| .|..|-++||....+ ---|.|||=-|.-.- ++++..+|+.
T Consensus 574 ~aqaie~~~q~~slip~dp~ilskl~dlydqegdk------sqafq~~ydsyryfp---~nie~iewl~ayyidtqf~ek 644 (840)
T KOG2003|consen 574 PAQAIELLMQANSLIPNDPAILSKLADLYDQEGDK------SQAFQCHYDSYRYFP---CNIETIEWLAAYYIDTQFSEK 644 (840)
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccch------hhhhhhhhhcccccC---cchHHHHHHHHHHHhhHHHHH
Confidence 4456666654 377888999854221 225676665554321 1223333321
Q ss_pred HHHhc-CHHHhcChhhhHHHHHHHHH-hhCcHHHHHHHHHh
Q 000515 457 DLAKM-TPEIRQTPEVLFARSVARAC-RTGNFIAFFRLARK 495 (1450)
Q Consensus 457 ~L~ql-p~eIr~sp~VqfAL~V~~A~-~~gNYvRFFRLlrs 495 (1450)
.+..+ ...+.+-..+++-+-|..|+ ++|||.+-|.|++.
T Consensus 645 ai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 645 AINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 11111 12334444566777788887 47999999999984
No 42
>COG5418 Predicted secreted protein [Function unknown]
Probab=26.67 E-value=44 Score=36.23 Aligned_cols=25 Identities=36% Similarity=0.864 Sum_probs=21.7
Q ss_pred HHHHHHHHhhhCCCCC-----CCchhcccc
Q 000515 1134 SLVEIVAAAKANPSNW-----PCPEIALVE 1158 (1450)
Q Consensus 1134 ~~~ei~~AA~s~p~~W-----P~pEi~ll~ 1158 (1450)
++.|+..|--+||-+| ||||..+|.
T Consensus 30 ~~~ev~~~l~~npk~~~IiqlPCPE~~yLg 59 (164)
T COG5418 30 TAKEVRKALPSNPKDWNIIQLPCPEFEYLG 59 (164)
T ss_pred HHHHHHHhhccCCCCCceEeccCchHHhhC
Confidence 5667888899999999 999999765
No 43
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=22.92 E-value=8e+02 Score=30.00 Aligned_cols=71 Identities=14% Similarity=0.210 Sum_probs=48.2
Q ss_pred HHHHHhhCcHHHHHHHHH--hccHHHHHH-----HHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhCCC----hHHH
Q 000515 477 VARACRTGNFIAFFRLAR--KASYLQACL-----MHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGME----EEDI 545 (1450)
Q Consensus 477 V~~A~~~gNYvRFFRLlr--sapYL~ACL-----Le~~F~~VR~~AL~~L~kAy~k~~~iPLs~LarlL~Fd----dEEa 545 (1450)
+...+-..||..||.-+- -+..|+.|. ...|..+||+++...+--+|+ .+.++.++.-+|.+ |.|+
T Consensus 276 l~~SLy~cdY~~~F~~ll~~~~n~L~~d~fl~rh~d~fvREMRrrvYaQlLESYr---~lsl~sMA~tFgVSV~yvdrDL 352 (412)
T COG5187 276 LATSLYECDYGGDFMNLLYLFCNSLQDDVFLGRHVDLFVREMRRRVYAQLLESYR---LLSLESMAQTFGVSVEYVDRDL 352 (412)
T ss_pred HHHHHHHhccchhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHhCccHHHHhhhH
Confidence 344555789999996443 355666554 345668899999999988885 67777777777766 2345
Q ss_pred HHHHH
Q 000515 546 ESLLE 550 (1450)
Q Consensus 546 ~eFce 550 (1450)
-+|.-
T Consensus 353 g~FIp 357 (412)
T COG5187 353 GEFIP 357 (412)
T ss_pred HhhCC
Confidence 55543
No 44
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=21.95 E-value=1.8e+02 Score=36.41 Aligned_cols=66 Identities=17% Similarity=0.280 Sum_probs=43.9
Q ss_pred HHHHHHhhCcHHHHHHHHHhc-cHHHHHHHHHHHHHHHHH----HHHHHHhhccCCCCCCHHHHHHHhCCChHH
Q 000515 476 SVARACRTGNFIAFFRLARKA-SYLQACLMHAHFSKLRTQ----ALASLYSGLQNNQGLPVAHVGRWLGMEEED 544 (1450)
Q Consensus 476 ~V~~A~~~gNYvRFFRLlrsa-pYL~ACLLe~~F~~VR~~----AL~~L~kAy~k~~~iPLs~LarlL~FddEE 544 (1450)
.+..|++.||..+|=.-+.+. +-+++==......++|.. +|+.|+-+|+ .|.+.++++.|++++++
T Consensus 323 ~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~LivRLR~NVIkTgIR~ISlsYS---RISl~DIA~kL~l~See 393 (493)
T KOG2581|consen 323 KLTQAVRLGDLKKFNETLEQFKDKFQADGTYTLIVRLRHNVIKTGIRKISLSYS---RISLQDIAKKLGLNSEE 393 (493)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhheeeeee---eccHHHHHHHhcCCCch
Confidence 567788899988887776642 333322222233345555 4555666786 89999999999999754
No 45
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=21.60 E-value=2.7e+02 Score=29.13 Aligned_cols=96 Identities=11% Similarity=0.150 Sum_probs=52.9
Q ss_pred cccccCcceEEEEeecCchhHHH--HHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCcccceE
Q 000515 974 NDAVSGASAVLFLVSESIPWKLQ--KVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVL 1051 (1450)
Q Consensus 974 ~~~~~GasailFlvsE~~~~~~~--r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~I~s~l 1051 (1450)
+....+|.|+||+++=+.+...+ +.+++.+....+ ..|++|+.--.|........... .+.+. ..+-
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~~~~~~~~------~~~~~--~~~~ 135 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDRKVKAKQI------TFHRK--KNLQ 135 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccccCCHHHH------HHHHH--cCCE
Confidence 34557899999999666554333 345566555443 78876655544432111111111 11111 1222
Q ss_pred EEEecCCccCCCCCcccchHHHHhHHHHhhccCCCCcce
Q 000515 1052 VKFLVGDQQSSHSDEFFSDEQLREGLQWLASESPLQPVV 1090 (1450)
Q Consensus 1052 vvfl~~~~~~~~~~gf~sd~~L~~gl~WLA~~~P~qP~l 1090 (1450)
++.+.++. ...+.+.+.||+...-.+|++
T Consensus 136 ~~e~Sa~~----------~~~v~~~f~~l~~~~~~~~~~ 164 (166)
T cd00877 136 YYEISAKS----------NYNFEKPFLWLARKLLGNPNL 164 (166)
T ss_pred EEEEeCCC----------CCChHHHHHHHHHHHHhcccc
Confidence 33333332 245999999999888777776
No 46
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=21.41 E-value=6.5e+02 Score=25.67 Aligned_cols=94 Identities=23% Similarity=0.254 Sum_probs=52.2
Q ss_pred ccccCcceEEEEeecCch--hHHHHHHHHHHHhhcCCCCCCceEEEeccCCccCCChhHHHHhhhCCCccccCcccceEE
Q 000515 975 DAVSGASAVLFLVSESIP--WKLQKVQLNKLVMSIPSGSCLPLLILSCSFDKEALDPCAVIINELGLSELDKSRVNRVLV 1052 (1450)
Q Consensus 975 ~~~~GasailFlvsE~~~--~~~~r~~L~~ll~S~p~gs~lPLlil~~s~~~~~~~~~~~i~~~LgL~~i~~~~I~s~lv 1052 (1450)
....+|.++||+++-+-+ +......+..++... .-...|.+|+.-=.|.........|...+++...-... +=+
T Consensus 62 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~---~~~ 137 (158)
T cd04151 62 CYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEE-ELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRT---WSI 137 (158)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCc---EEE
Confidence 347899999999975543 222344555555432 12357888877755543222234566667665432211 224
Q ss_pred EEecCCccCCCCCcccchHHHHhHHHHhhc
Q 000515 1053 KFLVGDQQSSHSDEFFSDEQLREGLQWLAS 1082 (1450)
Q Consensus 1053 vfl~~~~~~~~~~gf~sd~~L~~gl~WLA~ 1082 (1450)
+++.... ..-+.+.+.||+.
T Consensus 138 ~~~Sa~~----------~~gi~~l~~~l~~ 157 (158)
T cd04151 138 FKTSAIK----------GEGLDEGMDWLVN 157 (158)
T ss_pred EEeeccC----------CCCHHHHHHHHhc
Confidence 4544333 2347788888864
No 47
>PLN03086 PRLI-interacting factor K; Provisional
Probab=21.26 E-value=2e+02 Score=37.27 Aligned_cols=39 Identities=33% Similarity=0.271 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhHHHHHHH----HHHhhHHHhhh
Q 000515 790 VMKNYASAKLKL-ILRLWRRRSLKQKELR----KQRQLAANTAL 828 (1450)
Q Consensus 790 ~~eeia~aklkl-~lrlWrrra~~~relr----~~R~l~a~aAL 828 (1450)
-++..+.||+|+ -=|+=|..|+++||+. ++|++.|..|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (567)
T PLN03086 16 QRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEAQ 59 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566654 3455566677777765 56777775554
No 48
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=20.39 E-value=3.2e+02 Score=31.65 Aligned_cols=97 Identities=12% Similarity=0.098 Sum_probs=57.9
Q ss_pred HHHHHhhcCCC--CCCceEEEeccCCccCCChhHHHHhhhCCC--ccccCcccceEEEEecCCccCCCC-------Cccc
Q 000515 1000 LNKLVMSIPSG--SCLPLLILSCSFDKEALDPCAVIINELGLS--ELDKSRVNRVLVKFLVGDQQSSHS-------DEFF 1068 (1450)
Q Consensus 1000 L~~ll~S~p~g--s~lPLlil~~s~~~~~~~~~~~i~~~LgL~--~i~~~~I~s~lvvfl~~~~~~~~~-------~gf~ 1068 (1450)
+..|..++.-+ ..+|-++++|..+..-+ +-|..-+|+. --..+.|..+-+......+...+. .-|+
T Consensus 11 i~~l~~~~G~~~~i~~p~i~vvG~~~~GKS---t~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~ 87 (240)
T smart00053 11 LQDAFSALGQEKDLDLPQIAVVGGQSAGKS---SVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFT 87 (240)
T ss_pred HHHHHHHcCCCCCCCCCeEEEEcCCCccHH---HHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccC
Confidence 55555455543 69999999997764433 5555555663 233345554444332222222111 1224
Q ss_pred chHHHHhHHHHhhc------------------cCCCCcceeecccHHHH
Q 000515 1069 SDEQLREGLQWLAS------------------ESPLQPVVYCMRTRELI 1099 (1450)
Q Consensus 1069 sd~~L~~gl~WLA~------------------~~P~qP~l~~v~~relv 1099 (1450)
+-+.+++-+.+... .+|.+|++.+|||..+.
T Consensus 88 ~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~ 136 (240)
T smart00053 88 DFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGIT 136 (240)
T ss_pred CHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCcc
Confidence 55677777777654 57999999999999884
Done!