Query 000515
Match_columns 1450
No_of_seqs 228 out of 509
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 18:18:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000515.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_286-290//hhsearch_pdb/000515hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5v_A Nuclear mRNA export pro 1.0 1 1 499.7 27.6 281 306-604 2-304 (316)
2 4b4t_T 26S proteasome regulato 1.0 1 1 202.8 11.8 196 340-564 19-235 (274)
3 4b0z_A RPN12, 26S proteasome r 1.0 1 1 200.6 18.8 199 322-558 11-221 (229)
4 1rz4_A Eukaryotic translation 1.0 1 1 60.3 14.9 167 360-562 20-187 (226)
5 3l82_B F-box only protein 4; T 1.0 1 1 40.9 9.8 93 979-1085 125-222 (227)
6 3l2o_B F-box only protein 4; s 1.0 1 1 40.3 7.7 92 979-1084 210-306 (312)
7 3txn_A 26S proteasome regulato 1.0 1 1 34.2 12.7 114 427-549 217-337 (394)
8 4b4t_R RPN7, 26S proteasome re 1.0 1 1 25.9 7.7 110 429-548 246-367 (429)
9 4b4t_O 26S proteasome regulato 1.0 1 1 21.7 12.7 122 428-556 208-338 (393)
10 3t5x_A PCI domain-containing p 1.0 1 1 21.7 6.0 81 475-555 84-177 (203)
No 1
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=499.74 Aligned_cols=281 Identities=23% Similarity=0.356 Sum_probs=250.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46236689999999999999998339877332102467755455566422021147803689999999999999765421
Q 000515 306 EREANLIRPMPILQKTVGYLLDLLDQPYDERFLGLYNFLWDRMRAIRMDLRMQHIFNQEAITMLEQMIRLHIIAMHELCE 385 (1450)
Q Consensus 306 AgePsdVRPp~VL~KTLdYLL~~I~~p~de~f~~vY~FIwDRlRAIRQDLTvQ~i~~~eAI~VlEriaRFhIlslh~Lce 385 (1450)
++.|++|||++||++||+||+++|.+. +..+|+||||||||||||||+|++.+.++|.|||+|+||||+|+|.||+
T Consensus 2 ~P~P~~vRP~~vL~~Tl~yL~~~~~~~----~~~~y~fi~Dr~RsIRqDltvQ~i~~~~~v~v~E~~aRf~i~~~~~L~~ 77 (316)
T 3t5v_A 2 SPLPSDVRPPHILVKTLDYIVDNLLTT----LPESEGFLWDRMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVK 77 (316)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHTGGG----TTTCHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHCCCHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 898353599999999999999998700----5213689986266644485003658951799999999999999999710
Q ss_pred CCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHH
Q ss_conf 02599988664321169999999999999999872059887979999999999820269998767378999998118999
Q 000515 386 YTKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKRGLIISTEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEI 465 (1450)
Q Consensus 386 ~~~geg~~e~FD~qlnlEQLnKcL~SL~elYdD~r~~Gi~~pNEAEFrAY~ILl~L~d~p~~~ve~~eL~~~L~klp~eI 465 (1450)
.. .+||.|||.+|+++||++|+++|+|++..|+.||||+||+||+|||++++. ++...+.++|+++
T Consensus 78 ~~------~~f~~~~~~eQl~~~L~sL~~lY~d~~~~~~~~~ne~EF~aY~lL~~l~~~--------~~~~~l~~Lp~~i 143 (316)
T 3t5v_A 78 SN------VEFSLQQELEQLHKSLITLSEIYDDVRSSGGTCPNEAEFRAYALLSKIRDP--------QYDENIQRLPKHI 143 (316)
T ss_dssp SC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHSTTCT--------HHHHHHTTSCHHH
T ss_pred CC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHCCHHH
T ss_conf 78------761457789999999999999999875337899878999999999985563--------6899998579988
Q ss_pred HCCHHHHHHHHHHHHHH---------------HCCHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCC
Q ss_conf 63902467999999986---------------0949999999983--30799999999899999999999994215-999
Q 000515 466 RQTPEVLFARSVARACR---------------TGNFIAFFRLARK--ASYLQACLMHAHFSKLRTQALASLYSGLQ-NNQ 527 (1450)
Q Consensus 466 r~sp~VqfAL~V~~A~~---------------~gNYvRFFrLlks--asYLqaCLLe~~F~~IR~~ALk~L~kAy~-k~~ 527 (1450)
+++|.|++|+.+..|+. .|||+|||+|+++ +|||++|+|+.||+++|..||++|+++|. +..
T Consensus 144 ~~~p~Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~ 223 (316)
T 3t5v_A 144 FQDKLVQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHK 223 (316)
T ss_dssp HTSHHHHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCC
T ss_pred HCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 66988889999999997313100353223323355999999982668975999999999999999999999999666899
Q ss_pred CCCHHHHHHHHCCCH-HHHHHHHHHCCCEECCCCCC-C--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 978899999828994-89999999819902127986-2--1025888888999886421334211378732122469999
Q 000515 528 GLPVAHVGRWLGMEE-EDIESLLEYHGFSIKEFEEP-Y--MVKEGPFLNSDKDYPTKCSKLVLLKRSGRMVEDMSASSPV 603 (1450)
Q Consensus 528 ~IPLs~LaklL~FDd-EEa~eFLe~hGL~v~~~~e~-~--lvk~~~~~~~~~~~p~~~s~LVesKR~~r~ledv~~~~~~ 603 (1450)
.+|+++|+++|+|++ +|+.+||++||+++++.+.. + ++....++++..+....++.+||.|+.+.++++|+.++.+
T Consensus 224 ~~pl~~L~~~L~Fds~ee~~~F~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ve~K~~~~~~~~~i~~~~~ 303 (316)
T 3t5v_A 224 PIPFIYLENMLLFNNRQEIIEFCNYYSIEIINGDAADLKTLQHYSHKLSETQPLKKTYLTCLERRLQKTTYKGLINGGED 303 (316)
T ss_dssp CEEHHHHHHHTTCSSHHHHHHHHHHTTCCEETTTEECGGGCCCSSSSCTTSCCCCCCCCHHHHHHHHTSCHHHHHTCSCC
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHCCCEEECCCCCHHHHHCCHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCC
T ss_conf 96899999983899999999999987976768997107764000213655678760168889888747819999818898
Q ss_pred C
Q ss_conf 9
Q 000515 604 T 604 (1450)
Q Consensus 604 ~ 604 (1450)
.
T Consensus 304 ~ 304 (316)
T 3t5v_A 304 N 304 (316)
T ss_dssp C
T ss_pred C
T ss_conf 8
No 2
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=202.81 Aligned_cols=196 Identities=12% Similarity=0.144 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCC--------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCHHHH
Q ss_conf 246775545556642202114780--------------368999999999999976542102599988664321169999
Q 000515 340 LYNFLWDRMRAIRMDLRMQHIFNQ--------------EAITMLEQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQM 405 (1450)
Q Consensus 340 vY~FIwDRlRAIRQDLTvQ~i~~~--------------eAI~VlEriaRFhIlslh~Lce~~~geg~~e~FD~qlnlEQL 405 (1450)
.|+...+.+..++++++.|++-.+ .+.+|||..||+.|. +.|+++|
T Consensus 19 d~~~~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~~a~~si~--------------------~~D~~~F 78 (274)
T 4b4t_T 19 DYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQ--------------------TFNFDSF 78 (274)
T ss_dssp ------------------------------------------CHHHHHHCCSS--------------------CSSHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--------------------CCCHHHH
T ss_conf 99999999999999998556768887776502799999999999999999998--------------------4999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC---HHHHCCHHHHHHHHHHHHHH
Q ss_conf 999999999999872059887979999999999820269998767378999998118---99963902467999999986
Q 000515 406 NKTSVELFQMYDDHRKRGLIISTEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMT---PEIRQTPEVLFARSVARACR 482 (1450)
Q Consensus 406 nKcL~SL~elYdD~r~~Gi~~pNEAEFrAY~ILl~L~d~p~~~ve~~eL~~~L~klp---~eIr~sp~VqfAL~V~~A~~ 482 (1450)
++|+++|+.+|.|.+.....++|+.||.||+|||.+..+. ..++-..|..++ .++++++.|++|+++.+++.
T Consensus 79 ~~~~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~-----~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~ 153 (274)
T 4b4t_T 79 ENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNN-----TTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLM 153 (274)
T ss_dssp HHHHHHHHHHTTTTSSCSSCSHHHHHHHHHHHHHHHHHHC-----STHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 9999999999973223599985378999999999998698-----89999999961444675724907788999999998
Q ss_pred HCCHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCH-HHHHHHHHHCCCEECC
Q ss_conf 09499999999833---0799999999899999999999994215999978899999828994-8999999981990212
Q 000515 483 TGNFIAFFRLARKA---SYLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGMEE-EDIESLLEYHGFSIKE 558 (1450)
Q Consensus 483 ~gNYvRFFrLlksa---sYLqaCLLe~~F~~IR~~ALk~L~kAy~k~~~IPLs~LaklL~FDd-EEa~eFLe~hGL~v~~ 558 (1450)
+|||.+||+|+++. +++++|+|+.+++.+|..++.+|.++|. .+|+.+++++|+|++ +|+.+||+.+|..+++
T Consensus 154 eGnY~kff~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~kaY~---~i~l~~~~~~L~F~s~~e~~~F~~~~gW~~~~ 230 (274)
T 4b4t_T 154 EGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELSYD---FLPLSNIKALLFFNNEKETEKFALERNWPIVN 230 (274)
T ss_dssp HTCSHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCS---SCCHHHHHHHHTCCSHHHHHHHHHHTTCCCCS
T ss_pred CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEC
T ss_conf 599999999986589993889999999999999999999999874---24799999995899999999999985987869
Q ss_pred CCCCCC
Q ss_conf 798621
Q 000515 559 FEEPYM 564 (1450)
Q Consensus 559 ~~e~~l 564 (1450)
|..++
T Consensus 231 -~~v~F 235 (274)
T 4b4t_T 231 -SKVYF 235 (274)
T ss_dssp -SCCCC
T ss_pred -CEEEE
T ss_conf -97587
No 3
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=200.64 Aligned_cols=199 Identities=20% Similarity=0.268 Sum_probs=169.4
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC--------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 999999833987733210246775545556642202114780--------368999999999999976542102599988
Q 000515 322 VGYLLDLLDQPYDERFLGLYNFLWDRMRAIRMDLRMQHIFNQ--------EAITMLEQMIRLHIIAMHELCEYTKGEGFS 393 (1450)
Q Consensus 322 LdYLL~~I~~p~de~f~~vY~FIwDRlRAIRQDLTvQ~i~~~--------eAI~VlEriaRFhIlslh~Lce~~~geg~~ 393 (1450)
+..|.+.+.. ..|+..++.++.|++|||.|++..+ .|.+|||..+|+.|.
T Consensus 11 l~~L~~~~~~-------~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~--------------- 68 (229)
T 4b0z_A 11 LNHLADLYDR-------KDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQ--------------- 68 (229)
T ss_dssp SHHHHHHHHT-------TCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHH-------CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---------------
T ss_conf 9999999986-------059999999999999998667789988837899999999999999998---------------
Q ss_pred CCCCHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHH--HHCCHHH
Q ss_conf 66432116999999999999999987205988797999999999982026999876737899999811899--9639024
Q 000515 394 EGFDAHLNIEQMNKTSVELFQMYDDHRKRGLIISTEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPE--IRQTPEV 471 (1450)
Q Consensus 394 e~FD~qlnlEQLnKcL~SL~elYdD~r~~Gi~~pNEAEFrAY~ILl~L~d~p~~~ve~~eL~~~L~klp~e--Ir~sp~V 471 (1450)
..++++|++|+++|+.+|.+. ...++|+.||.+|+||+.+..+ ...++...+..++++ ++++|.|
T Consensus 69 -----~~D~~~F~~~~~qLk~~Y~~~---~~~s~~~~e~~~~~LL~lL~~~-----~~~ef~~~le~l~~~~~~~~~~~I 135 (229)
T 4b0z_A 69 -----TCDIESFARYASQVIPFYHDS---LVPSSRMGLVTGLNLLYLLSEN-----RIAEFHTALESVPDKSLFERDPYV 135 (229)
T ss_dssp -----TTCHHHHHHHHHHHHHHHSSC---CCCCTTHHHHHHHHHHHHHHTT-----CHHHHHHHHHHCSCTTHHHHCHHH
T ss_pred -----CCCHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHCCHHHHHHCCHHH
T ss_conf -----299999999999999998733---8898639999999999999859-----906899999856858775349799
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCH-HHHHHHH
Q ss_conf 67999999986094999999998330-799999999899999999999994215999978899999828994-8999999
Q 000515 472 LFARSVARACRTGNFIAFFRLARKAS-YLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGMEE-EDIESLL 549 (1450)
Q Consensus 472 qfAL~V~~A~~~gNYvRFFrLlksas-YLqaCLLe~~F~~IR~~ALk~L~kAy~k~~~IPLs~LaklL~FDd-EEa~eFL 549 (1450)
++|++|.+|+++|||.+||++++++| ...+|+|..+++.+|..++++|.++|. .+|+++++++|+|++ +++++||
T Consensus 136 ~~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~l~~~vR~~~l~~i~kaY~---~i~l~~~~~~L~f~s~~e~~~f~ 212 (229)
T 4b0z_A 136 EWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYS---EIPLSNATSLLYLENTKETEKLA 212 (229)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHHHHHHHHCS---EEEHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 999999999986899999999851863157899999999999999999999828---88899999996899999999999
Q ss_pred HHCCCEECC
Q ss_conf 981990212
Q 000515 550 EYHGFSIKE 558 (1450)
Q Consensus 550 e~hGL~v~~ 558 (1450)
+.+|..+++
T Consensus 213 ~~~gw~i~d 221 (229)
T 4b0z_A 213 EERGWDIRD 221 (229)
T ss_dssp HHHTCEEET
T ss_pred HHCCCEEEC
T ss_conf 985997769
No 4
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=1.00 E-value=1 Score=60.35 Aligned_cols=167 Identities=14% Similarity=0.139 Sum_probs=119.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 47803689999999999999765421025999886643211699999999999999998720598879799999999998
Q 000515 360 IFNQEAITMLEQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKRGLIISTEKEFRGYYALL 439 (1450)
Q Consensus 360 i~~~eAI~VlEriaRFhIlslh~Lce~~~geg~~e~FD~qlnlEQLnKcL~SL~elYdD~r~~Gi~~pNEAEFrAY~ILl 439 (1450)
-.|++.+..+|+.+.-.+.- ..||.. -+-++..|.++| +.....+..+.++|.
T Consensus 20 rYnp~~l~~le~Yv~qq~~~--------------~~YD~~-----anlalLklYq~~--------p~~~~~~ii~~iLlk 72 (226)
T 1rz4_A 20 RYNPENLATLERYVETQAKE--------------NAYDLE-----ANLAVLKLYQFN--------PAFFQTTVTAQILLK 72 (226)
T ss_dssp GGCGGGHHHHHHHHHHHHHH--------------TCCCHH-----HHHHHHHHHHHS--------GGGCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHC--------------CCCCHH-----HHHHHHHHHHCC--------CCCCCHHHHHHHHHH
T ss_conf 27877788999999999752--------------565678-----899999887259--------753306399999999
Q ss_pred HCCCCCCCCCCHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20269998767378999998118999639024679999999860949999999983307999999998999999999999
Q 000515 440 KLDKHPGYKVEPAELSLDLAKMTPEIRQTPEVLFARSVARACRTGNFIAFFRLARKASYLQACLMHAHFSKLRTQALASL 519 (1450)
Q Consensus 440 ~L~d~p~~~ve~~eL~~~L~klp~eIr~sp~VqfAL~V~~A~~~gNYvRFFrLlksasYLqaCLLe~~F~~IR~~ALk~L 519 (1450)
.|-+.|. .++...+.-+|+.+..++.|+....+...+.+++|.+|++.+++..- ....+..+...+|..+...+
T Consensus 73 ~L~~~p~-----~DF~~~l~LIp~~~~~~~~I~~i~~L~~~L~~~~y~~fW~~l~~~~~-l~~~i~gf~dsIR~~I~~~i 146 (226)
T 1rz4_A 73 ALTNLPH-----TDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDENMD-LLEGITGFEDSVRKFICHVV 146 (226)
T ss_dssp HHHTTTS-----THHHHHHHTSCHHHHTSTTHHHHHHHHHHHHTTCHHHHHHHSCTTCH-HHHTSTTHHHHHHHHHHHHH
T ss_pred HHHCCCH-----HHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHH
T ss_conf 9876887-----87888798477654219778999999999976999999999851736-78787689999999999999
Q ss_pred HHHCCCCCCCCHHHHHHHHCC-CHHHHHHHHHHCCCEECCCCCC
Q ss_conf 942159999788999998289-9489999999819902127986
Q 000515 520 YSGLQNNQGLPVAHVGRWLGM-EEEDIESLLEYHGFSIKEFEEP 562 (1450)
Q Consensus 520 ~kAy~k~~~IPLs~LaklL~F-DdEEa~eFLe~hGL~v~~~~e~ 562 (1450)
.++|. .||+..++++|++ +++++..||+..|-+++++|..
T Consensus 147 ~~aY~---sI~~~~la~lLg~~s~~el~~fi~~~GW~vd~~g~I 187 (226)
T 1rz4_A 147 GITYQ---HIDRWLLAEMLGDLSDSQLKVWMSKYGWSADESGQI 187 (226)
T ss_dssp HHHCS---EECHHHHHHHTTSCCHHHHHHHHHHHTCEECC--CE
T ss_pred HHHHH---HCCHHHHHHHHCCCCHHHHHHHHHHCCCEECCCCCE
T ss_conf 99980---079999999876999899999999888978799607
No 5
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=40.89 Aligned_cols=93 Identities=19% Similarity=0.297 Sum_probs=57.8
Q ss_pred CCCEEEEEEECCCH-HHHHHHHH---HHHHHHCCCCCCCCEEEEECC-CCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 76348998615851-57889999---998840699888852897236-77667881577976308876456764625999
Q 000515 979 GASAVLFLVSESIP-WKLQKVQL---NKLVMSIPSGSCLPLLILSCS-FDKEALDPCAVIINELGLSELDKSRVNRVLVK 1053 (1450)
Q Consensus 979 GasailFlvsE~~~-~~~qr~~L---~~Ll~S~p~gs~lPLLil~~s-~~~~~~~~~~~i~~~LgL~~l~~~~I~s~lVv 1053 (1450)
++.||||+|.-+.. -...|.-| +.+|.---.-..+|||||.-- .+-..--+..+|.+.|+|+.|+ -.|-|.
T Consensus 125 ~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~----R~W~Iq 200 (227)
T 3l82_B 125 VVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLN----HPWLVQ 200 (227)
T ss_dssp HCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGC----SCEEEE
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCCCC----CCEEEE
T ss_conf 7987999952660757999999999999853166608986999967886766789999999870976789----778999
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 94078667887766663778867887520499
Q 000515 1054 FLVGDQQSSHSDEFFSDEQLREGLQWLASESP 1085 (1450)
Q Consensus 1054 fl~~~~~~~~~~gffsd~~L~~gl~WLA~~~P 1085 (1450)
...+..- +-|-+||.||.+..-
T Consensus 201 ~csA~TG----------eGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 201 DTEAETL----------TGFLNGIEWILEEVE 222 (227)
T ss_dssp EEETTTC----------TTHHHHHHHHTTTTT
T ss_pred EEECCCC----------CCHHHHHHHHHHHHH
T ss_conf 8179888----------599999999999987
No 6
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=40.25 Aligned_cols=92 Identities=22% Similarity=0.374 Sum_probs=59.4
Q ss_pred CCCEEEEEEEC----CCHHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 76348998615----8515788999999884069988885289723-677667881577976308876456764625999
Q 000515 979 GASAVLFLVSE----SIPWKLQKVQLNKLVMSIPSGSCLPLLILSC-SFDKEALDPCAVIINELGLSELDKSRVNRVLVK 1053 (1450)
Q Consensus 979 GasailFlvsE----~~~~~~qr~~L~~Ll~S~p~gs~lPLLil~~-s~~~~~~~~~~~i~~~LgL~~l~~~~I~s~lVv 1053 (1450)
++.||||+|.- -+........|+.+|.---.-..+|||||.- ..+-...-+..+|.+.|+|+.|+ -.|-|.
T Consensus 210 ~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~----r~W~Iq 285 (312)
T 3l2o_B 210 VVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLN----HPWLVQ 285 (312)
T ss_dssp HCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGC----SCEEEE
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCCCC----CCEEEE
T ss_conf 7987999954772768999999999999853266608986999967865666799999999872976689----767999
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9407866788776666377886788752049
Q 000515 1054 FLVGDQQSSHSDEFFSDEQLREGLQWLASES 1084 (1450)
Q Consensus 1054 fl~~~~~~~~~~gffsd~~L~~gl~WLA~~~ 1084 (1450)
...+..- +-|-|||.||.+..
T Consensus 286 ~csA~tG----------eGL~EGldWL~~~l 306 (312)
T 3l2o_B 286 DTEAETL----------TGFLNGIEWILEEV 306 (312)
T ss_dssp EEETTTC----------TTHHHHHHHHHHHS
T ss_pred ECCCCCC----------CCHHHHHHHHHHHH
T ss_conf 5546888----------69999999999998
No 7
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=1.00 E-value=1 Score=34.18 Aligned_cols=114 Identities=16% Similarity=0.143 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHC-------CHH
Q ss_conf 9799999999998202699987673789999981189996390246799999998609499999999833-------079
Q 000515 427 STEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEIRQTPEVLFARSVARACRTGNFIAFFRLARKA-------SYL 499 (1450)
Q Consensus 427 pNEAEFrAY~ILl~L~d~p~~~ve~~eL~~~L~klp~eIr~sp~VqfAL~V~~A~~~gNYvRFFrLlksa-------sYL 499 (1450)
+....+.-|.+|..+-..... ++...+.+-.......|.+.....+..|+..+++..|+.++... +|+
T Consensus 217 ~~~~~~lkYlvL~aLl~~~r~-----el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l 291 (394)
T 3txn_A 217 VKALTSLKYMLLCKIMLGQSD-----DVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIV 291 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCGG-----GHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHH-----HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHH
T ss_conf 778999999999999849988-----999996342000157932799999999987078999999999999998438689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999998999999999999942159999788999998289948999999
Q 000515 500 QACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGMEEEDIESLL 549 (1450)
Q Consensus 500 qaCLLe~~F~~IR~~ALk~L~kAy~k~~~IPLs~LaklL~FDdEEa~eFL 549 (1450)
..+ .......||..+|..+...|. .+.++.|++.|+.+.++++..+
T Consensus 292 ~~h-~~~L~~~Ir~~~L~~i~~pYs---rIsl~~iA~~l~ls~~evE~~L 337 (394)
T 3txn_A 292 QAH-LGTLYDTMLEQNLCRIIEPYS---RVQVAHVAESIQLPMPQVEKKL 337 (394)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHTTCS---EEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHC---EEEHHHHHHHHCCCHHHHHHHH
T ss_conf 999-999999999999999957443---0119999999790999999999
No 8
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=25.87 Aligned_cols=110 Identities=14% Similarity=0.229 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHH----HCCHHHHHHHHHHHHHHHCCHHHHHHHHH-H-------C
Q ss_conf 9999999999820269998767378999998118999----63902467999999986094999999998-3-------3
Q 000515 429 EKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEI----RQTPEVLFARSVARACRTGNFIAFFRLAR-K-------A 496 (1450)
Q Consensus 429 EAEFrAY~ILl~L~d~p~~~ve~~eL~~~L~klp~eI----r~sp~VqfAL~V~~A~~~gNYvRFFrLlk-s-------a 496 (1450)
-..+.-|.+|+.+...+ ..++...+.. .+++ ...|.+.....+..++..++|..||..+. . -
T Consensus 246 ~~~~~~y~~l~al~~~~-----r~~l~~~v~~-~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d 319 (429)
T 4b4t_R 246 YESIATYASVTGLFTLE-----RTDLKSKVID-SPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPC 319 (429)
T ss_dssp HHHHHHHHHHHHHHTTC-----HHHHHHSSSS-SHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTC
T ss_pred HHHHHHHHHHHHHHCCC-----HHHHHHHHHC-CHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
T ss_conf 77999999999984488-----8889999860-88877540478558999999999984158899999999987564047
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 0799999999899999999999994215999978899999828994899999
Q 000515 497 SYLQACLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGMEEEDIESL 548 (1450)
Q Consensus 497 sYLqaCLLe~~F~~IR~~ALk~L~kAy~k~~~IPLs~LaklL~FDdEEa~eF 548 (1450)
+||..+ ...+...||..++..+...|. .+.++.|+..|+++.++++.+
T Consensus 320 ~~l~~h-~~~l~~~ir~~~l~q~~~~Ys---~I~l~~mA~~l~~s~~~~E~~ 367 (429)
T 4b4t_R 320 KYLNRH-ADFFVREMRRKVYAQLLESYK---TLSLKSMASAFGVSVAFLDND 367 (429)
T ss_dssp TTSTTT-HHHHHHHHHHHHHHHHHHTCS---EEEHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHC---EEEHHHHHHHHCCCHHHHHHH
T ss_conf 788999-999999999999999968854---202999999969299999999
No 9
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=21.71 Aligned_cols=122 Identities=15% Similarity=0.066 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC--HHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHH----HCCHHHH
Q ss_conf 79999999999820269998767378999998118--99963902467999999986094999999998----3307999
Q 000515 428 TEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMT--PEIRQTPEVLFARSVARACRTGNFIAFFRLAR----KASYLQA 501 (1450)
Q Consensus 428 NEAEFrAY~ILl~L~d~p~~~ve~~eL~~~L~klp--~eIr~sp~VqfAL~V~~A~~~gNYvRFFrLlk----sasYLqa 501 (1450)
.+..-.+|.++..+-..|+... + .++...| ..+.+.+....-.++..+|..|++..|..+++ ..++|..
T Consensus 208 ~~~~~~a~~l~~~all~~~i~~----f-~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~ 282 (393)
T 4b4t_O 208 AERQQLAYDLSISALLGDKIYN----F-GELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQ 282 (393)
T ss_dssp HHHHHHHHHHHHHHHHCCSSCS----T-HHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCC----H-HHHHCCHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH
T ss_conf 9999999999999981999887----5-8886784778764697368999999998659999999999871540841122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHH---HHHCCCEE
Q ss_conf 99999899999999999994215999978899999828994899999---99819902
Q 000515 502 CLMHAHFSKLRTQALASLYSGLQNNQGLPVAHVGRWLGMEEEDIESL---LEYHGFSI 556 (1450)
Q Consensus 502 CLLe~~F~~IR~~ALk~L~kAy~k~~~IPLs~LaklL~FDdEEa~eF---Le~hGL~v 556 (1450)
.. .....++|..+|..++.+. ....+|++.|++.|+.+.++++.+ +-+.|+.-
T Consensus 283 ~~-~~l~~kirll~l~~l~~~~-~~~~i~f~~ia~~l~i~~~evE~lli~aI~~glI~ 338 (393)
T 4b4t_O 283 HE-SFLRQKICLMTLIETVFVK-NIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLK 338 (393)
T ss_dssp HH-HHHHHHHHHHHHHHHHCSS-SCCCEEHHHHHHHHTCCHHHHHHHHHHHHHHSCSS
T ss_pred HH-HHHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 18-9999999999999875147-78837599999896909999999999999859879
No 10
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=1.00 E-value=1 Score=21.66 Aligned_cols=81 Identities=19% Similarity=0.324 Sum_probs=54.2
Q ss_pred HHHHHHHHHCCHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHH-C--CCCCCCCHHHHHHHHCC------CHHH
Q ss_conf 999999860949999999983-307999999998999999999999942-1--59999788999998289------9489
Q 000515 475 RSVARACRTGNFIAFFRLARK-ASYLQACLMHAHFSKLRTQALASLYSG-L--QNNQGLPVAHVGRWLGM------EEED 544 (1450)
Q Consensus 475 L~V~~A~~~gNYvRFFrLlks-asYLqaCLLe~~F~~IR~~ALk~L~kA-y--~k~~~IPLs~LaklL~F------DdEE 544 (1450)
..+..|++.||...|-+.+++ -.++..+=+..-+.++|..+++.+.+- + .+...+|++.++.-|.+ +.+|
T Consensus 84 ~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~~~e 163 (203)
T 3t5x_A 84 AEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDE 163 (203)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCCHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHH
T ss_conf 99999999599999999999819999987969999998999999999999985588845599999999856788999899
Q ss_pred HH---HHHHHCCCE
Q ss_conf 99---999981990
Q 000515 545 IE---SLLEYHGFS 555 (1450)
Q Consensus 545 a~---eFLe~hGL~ 555 (1450)
++ .-+..-|+.
T Consensus 164 vE~ila~lI~~G~I 177 (203)
T 3t5x_A 164 VQCILANLIYMGHV 177 (203)
T ss_dssp HHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHCCCE
T ss_conf 99999999971934
Done!