Query 000516
Match_columns 1449
No_of_seqs 196 out of 217
Neff 3.9
Searched_HMMs 46136
Date Mon Apr 1 17:36:03 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0196 Tyrosine kinase, EPH ( 97.8 1.4E-05 3.1E-10 99.2 4.7 63 802-878 259-331 (996)
2 PF07699 GCC2_GCC3: GCC2 and G 96.0 0.004 8.7E-08 53.5 2.3 27 813-841 9-35 (48)
3 PF10256 Erf4: Golgin subfamil 94.0 0.14 2.9E-06 51.5 6.6 68 975-1042 21-92 (118)
4 cd00185 TNFR Tumor necrosis fa 92.8 0.15 3.2E-06 49.9 4.6 67 801-873 12-87 (98)
5 PF07562 NCD3G: Nine Cysteines 87.0 0.13 2.7E-06 45.8 -1.1 36 803-840 6-51 (54)
6 PHA02637 TNF-alpha-receptor-li 86.4 0.64 1.4E-05 48.4 3.3 39 805-843 31-74 (127)
7 PHA02637 TNF-alpha-receptor-li 84.1 0.76 1.6E-05 47.9 2.7 41 797-838 38-87 (127)
8 PF07699 GCC2_GCC3: GCC2 and G 81.2 1.2 2.6E-05 38.5 2.5 33 798-830 6-43 (48)
9 KOG4289 Cadherin EGF LAG seven 79.4 1.4 3E-05 59.3 3.2 85 1289-1384 2171-2257(2531)
10 KOG0921 Dosage compensation co 78.2 4.9 0.00011 52.8 7.2 26 37-62 1014-1044(1282)
11 PTZ00382 Variant-specific surf 69.5 3 6.5E-05 41.5 2.0 26 813-841 4-29 (96)
12 PF10256 Erf4: Golgin subfamil 60.4 13 0.00027 37.6 4.5 55 1123-1177 26-105 (118)
13 PF05268 GP38: Phage tail fibr 59.3 33 0.00072 39.2 7.8 37 220-257 114-152 (260)
14 KOG4069 Uncharacterized conser 56.5 26 0.00057 37.1 6.0 80 974-1057 45-137 (154)
15 cd00185 TNFR Tumor necrosis fa 56.0 11 0.00024 37.1 3.2 32 812-843 11-44 (98)
16 PF15496 DUF4646: Domain of un 55.7 13 0.00029 38.5 3.8 49 1125-1173 45-122 (123)
17 PF15496 DUF4646: Domain of un 53.8 17 0.00038 37.6 4.3 70 980-1050 43-120 (123)
18 KOG1836 Extracellular matrix g 53.2 14 0.00031 52.1 4.6 42 798-839 794-837 (1705)
19 KOG0921 Dosage compensation co 48.8 42 0.0009 44.9 7.3 25 111-138 1066-1090(1282)
20 PF07354 Sp38: Zona-pellucida- 48.7 19 0.00041 42.1 4.0 36 801-839 217-261 (271)
21 smart00180 EGF_Lam Laminin-typ 48.3 11 0.00023 32.7 1.6 21 804-824 20-40 (46)
22 cd00055 EGF_Lam Laminin-type e 48.3 11 0.00023 33.0 1.6 22 804-825 21-42 (50)
23 cd03357 LbH_MAT_GAT Maltose O- 42.3 73 0.0016 34.0 7.0 69 89-162 63-145 (169)
24 KOG3973 Uncharacterized conser 41.3 91 0.002 37.9 8.0 8 298-305 452-459 (465)
25 PF12273 RCR: Chitin synthesis 39.6 27 0.00058 36.1 3.2 21 890-910 2-23 (130)
26 COG1045 CysE Serine acetyltran 39.5 45 0.00097 37.5 5.0 58 86-150 91-154 (194)
27 PRK09677 putative lipopolysacc 39.1 74 0.0016 34.9 6.5 61 100-163 35-95 (192)
28 PF14946 DUF4501: Domain of un 39.0 80 0.0017 34.9 6.5 29 885-913 83-112 (180)
29 KOG4611 Uncharacterized conser 34.8 48 0.001 40.0 4.5 78 801-882 31-125 (747)
30 PRK11132 cysE serine acetyltra 34.8 39 0.00084 39.6 3.8 59 84-149 163-227 (273)
31 PF05281 Secretogranin_V: Neur 32.5 46 0.00099 37.8 3.7 92 768-876 48-144 (208)
32 cd00064 FU Furin-like repeats. 31.2 36 0.00078 29.3 2.1 10 814-823 16-25 (49)
33 PF00053 Laminin_EGF: Laminin 31.1 21 0.00045 30.9 0.6 23 804-826 20-42 (49)
34 PF05268 GP38: Phage tail fibr 30.8 96 0.0021 35.7 5.8 41 255-295 113-158 (260)
35 KOG1219 Uncharacterized conser 29.8 60 0.0013 47.3 4.7 15 802-816 3886-3900(4289)
36 PLN02357 serine acetyltransfer 29.5 62 0.0014 39.4 4.4 56 87-149 251-312 (360)
37 COG4698 Uncharacterized protei 29.5 40 0.00087 37.6 2.6 60 891-953 14-81 (197)
38 PRK09752 adhesin; Provisional 28.1 2E+03 0.043 31.2 19.0 142 329-478 283-451 (1250)
39 PRK09527 lacA galactoside O-ac 28.0 1.4E+02 0.003 33.6 6.5 67 91-162 78-158 (203)
40 cd05825 LbH_wcaF_like wcaF-lik 27.9 1.7E+02 0.0036 28.9 6.4 64 93-161 8-82 (107)
41 PLN02739 serine acetyltransfer 27.4 61 0.0013 39.4 3.8 56 87-149 230-291 (355)
42 KOG4258 Insulin/growth factor 26.7 44 0.00095 44.4 2.6 25 947-971 409-433 (1025)
43 PLN02694 serine O-acetyltransf 26.0 73 0.0016 37.9 4.1 58 85-149 183-246 (294)
44 PRK10502 putative acyl transfe 25.8 1.5E+02 0.0032 32.3 6.0 31 131-163 122-152 (182)
45 cd04649 LbH_THP_succinylT_puta 25.7 2.4E+02 0.0052 30.7 7.5 13 134-146 74-86 (147)
46 PRK10092 maltose O-acetyltrans 24.3 1.7E+02 0.0037 32.2 6.3 68 90-162 75-156 (183)
47 PF12273 RCR: Chitin synthesis 23.9 39 0.00085 34.9 1.3 41 1004-1050 1-41 (130)
48 KOG2736 Presenilin [Signal tra 23.4 44 0.00096 40.8 1.7 23 1338-1362 145-167 (406)
49 KOG4180 Predicted kinase [Gene 22.3 1.4E+02 0.003 36.3 5.3 21 1092-1112 103-123 (395)
50 KOG1056 Glutamate-gated metabo 21.7 1.1E+02 0.0023 41.3 4.8 35 803-841 495-538 (878)
51 PF04519 Bactofilin: Polymer-f 21.6 5.2E+02 0.011 25.3 8.4 14 150-163 83-96 (101)
52 KOG0994 Extracellular matrix g 21.1 92 0.002 42.7 3.9 41 804-848 784-824 (1758)
No 1
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=97.82 E-value=1.4e-05 Score=99.20 Aligned_cols=63 Identities=35% Similarity=0.756 Sum_probs=51.7
Q ss_pred EcccCCCCcc----ccccccCCCCcccccCCCCCCCcccCCCCCCCCcceeEEeecccccCCCCCcccccCccCC-----
Q 000516 802 TGKKCPKGLY----GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGRGVSQPFCPYECISEKYRM----- 872 (1449)
Q Consensus 802 ~g~~CP~G~~----G~fC~eCP~GtYK~~sGs~~~~C~pCp~~~~p~ra~~~y~~g~G~~~~~CpY~C~sdky~~----- 872 (1449)
-.+.|.+||. +..|+.||.||||... ....|.+||+++.+. ....++| .|..+|||.
T Consensus 259 G~C~C~aGye~~~~~~~C~aCp~G~yK~~~--~~~~C~~CP~~S~s~----------~ega~~C--~C~~gyyRA~~Dp~ 324 (996)
T KOG0196|consen 259 GGCVCKAGYEEAENGKACQACPPGTYKASQ--GDSLCLPCPPNSHSS----------SEGATSC--TCENGYYRADSDPP 324 (996)
T ss_pred CceeecCCCCcccCCCcceeCCCCcccCCC--CCCCCCCCCCCCCCC----------CCCCCcc--cccCCcccCCCCCC
Confidence 3489999996 6789999999999975 468999999977542 2347789 999999998
Q ss_pred -CCCCCh
Q 000516 873 -PKCYTP 878 (1449)
Q Consensus 873 -p~C~tp 878 (1449)
..|++|
T Consensus 325 ~mpCT~P 331 (996)
T KOG0196|consen 325 SMPCTRP 331 (996)
T ss_pred CCCCCCC
Confidence 679887
No 2
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=96.04 E-value=0.004 Score=53.54 Aligned_cols=27 Identities=48% Similarity=1.059 Sum_probs=23.2
Q ss_pred cccccCCCCcccccCCCCCCCcccCCCCC
Q 000516 813 TFCKECPIGTYKDMEGSDESLCTPCSLEL 841 (1449)
Q Consensus 813 ~fC~eCP~GtYK~~sGs~~~~C~pCp~~~ 841 (1449)
..|++||.||||+..|. ..|.+||++.
T Consensus 9 ~~C~~Cp~GtYq~~~g~--~~C~~Cp~g~ 35 (48)
T PF07699_consen 9 NKCQPCPKGTYQDEEGQ--TSCTPCPPGS 35 (48)
T ss_pred CccCCCCCCccCCccCC--ccCccCcCCC
Confidence 46999999999999875 4899999864
No 3
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=93.98 E-value=0.14 Score=51.50 Aligned_cols=68 Identities=19% Similarity=0.387 Sum_probs=45.4
Q ss_pred CCCchhhhhhcHHHHHHHHHHHhhhhh--hhh--hhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHh
Q 000516 975 SPPNAIIEIVYEDAFNRFIDEINSVAA--YDW--WEGSIHSILTVLAYPCAWSWKQWRRRNKIHRLQEYVKS 1042 (1449)
Q Consensus 975 spP~~i~~IVyed~Fn~Fad~IN~laa--y~~--We~~l~~ILsvl~YPlaw~wlq~rRrkK~~rL~efv~s 1042 (1449)
.-|.++..++.+++|++++++||+..+ |.. |.-++-.+|.++..=+...+.....||++++|.+|+.+
T Consensus 21 ~~P~~L~~~is~~ef~~iI~~IN~~l~~a~~~~~~~~~~~~~l~~lt~~l~~~~~~~~~~~~~~~le~~l~~ 92 (118)
T PF10256_consen 21 EYPGELSGYISPEEFEEIINTINQILKEAFEPISWRNIIENILGCLTLGLSSLCFKTHYKRKLRELEKYLEQ 92 (118)
T ss_pred cCCHhhcCCCCHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999999873 322 44444555555542222222233456778889999973
No 4
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=92.77 E-value=0.15 Score=49.94 Aligned_cols=67 Identities=25% Similarity=0.551 Sum_probs=41.8
Q ss_pred EEcccCCCCcc---------ccccccCCCCcccccCCCCCCCcccCCCCCCCCcceeEEeecccccCCCCCcccccCccC
Q 000516 801 VTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGRGVSQPFCPYECISEKYR 871 (1449)
Q Consensus 801 i~g~~CP~G~~---------G~fC~eCP~GtYK~~sGs~~~~C~pCp~~~~p~ra~~~y~~g~G~~~~~CpY~C~sdky~ 871 (1449)
.-=+.||+|++ ...|++||.|+|..... ....|++|+. -+ ...++-....-.+...| .|.+++|.
T Consensus 12 ~cC~~C~pG~~~~~~C~~~~~t~C~~C~~g~ys~~~~-~~~~C~~c~~--C~-~g~~~~~~ct~t~dt~C--~C~~G~y~ 85 (98)
T cd00185 12 LCCDQCPPGTYLSKDCTPGSDTVCEPCPPGTYTDSWN-HLPKCLSCRT--CD-SGLVEKAPCTATRNTVC--GCKPGFYC 85 (98)
T ss_pred CCCCCCCCCccCCCcCCCCCCCeecCCCCCCcccCCC-CCCcCCcCcc--CC-CCCEEEccCCCCCCCeE--eCCCCCEe
Confidence 44578999986 34699999999988653 2357888874 22 12233222311223349 59999885
Q ss_pred CC
Q 000516 872 MP 873 (1449)
Q Consensus 872 ~p 873 (1449)
..
T Consensus 86 ~~ 87 (98)
T cd00185 86 LT 87 (98)
T ss_pred cC
Confidence 54
No 5
>PF07562 NCD3G: Nine Cysteines Domain of family 3 GPCR; InterPro: IPR011500 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents a conserved sequence, found in the extracellular region, that contains several highly-conserved Cys residues that are predicted to form disulphide bridges.; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 2E4X_B 2E4Y_A 2E4U_B 2E4V_B 2E4W_A.
Probab=87.03 E-value=0.13 Score=45.84 Aligned_cols=36 Identities=31% Similarity=0.670 Sum_probs=20.1
Q ss_pred cccCCCCccc----------cccccCCCCcccccCCCCCCCcccCCCC
Q 000516 803 GKKCPKGLYG----------TFCKECPIGTYKDMEGSDESLCTPCSLE 840 (1449)
Q Consensus 803 g~~CP~G~~G----------~fC~eCP~GtYK~~sGs~~~~C~pCp~~ 840 (1449)
...|++|++. +.|++||.|+|.+.+ +...|.+||.+
T Consensus 6 S~~C~pG~~k~~~~~~~~CCw~C~~C~~~~is~~~--~~~~C~~C~~~ 51 (54)
T PF07562_consen 6 SEPCPPGQRKKIQKGQPSCCWDCVPCPEGEISNQT--DSTSCTKCPEG 51 (54)
T ss_dssp S----TTTEEEE--SSS-S--EEEE--TTEEEE----ETTEEEE--TT
T ss_pred CCCCCCCCEECccCCCcceEEEeecCCCCcEECCC--CccccccCCCc
Confidence 4689999862 259999999999976 46789999964
No 6
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=86.38 E-value=0.64 Score=48.42 Aligned_cols=39 Identities=33% Similarity=0.749 Sum_probs=26.4
Q ss_pred cCCCCcc---ccccccCCCCcccccCCC--CCCCcccCCCCCCC
Q 000516 805 KCPKGLY---GTFCKECPIGTYKDMEGS--DESLCTPCSLELLP 843 (1449)
Q Consensus 805 ~CP~G~~---G~fC~eCP~GtYK~~sGs--~~~~C~pCp~~~~p 843 (1449)
.|..+-| +.-|.+||+|+|...-.+ ....|.|||..++.
T Consensus 31 ~C~e~EY~~~~~CC~kCPPGt~v~~~Ct~~t~T~C~PCp~GTYT 74 (127)
T PHA02637 31 KCKDNEYKRHNLCCLSCPPGTYASRLCDIKTNTQCTPCGSGTFT 74 (127)
T ss_pred CCCCCcCcCCCeEcCCCCCCCEEeCcCCCCCCcccccCCCCCee
Confidence 5777755 334899999998874332 23579999976543
No 7
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=84.13 E-value=0.76 Score=47.89 Aligned_cols=41 Identities=27% Similarity=0.661 Sum_probs=30.8
Q ss_pred CCceEEcccCCCCcc---------ccccccCCCCcccccCCCCCCCcccCC
Q 000516 797 EVGTVTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCS 838 (1449)
Q Consensus 797 ~~GTi~g~~CP~G~~---------G~fC~eCP~GtYK~~sGs~~~~C~pCp 838 (1449)
..+..-=+.||+|++ ...|.+||.|||..... ....|.+|.
T Consensus 38 ~~~~~CC~kCPPGt~v~~~Ct~~t~T~C~PCp~GTYTe~~N-~~~~C~~C~ 87 (127)
T PHA02637 38 KRHNLCCLSCPPGTYASRLCDIKTNTQCTPCGSGTFTSHNN-HLPACLSCN 87 (127)
T ss_pred cCCCeEcCCCCCCCEEeCcCCCCCCcccccCCCCCeeccCC-CCCcccccC
Confidence 455667788999986 56799999999987543 235677776
No 8
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=81.21 E-value=1.2 Score=38.47 Aligned_cols=33 Identities=42% Similarity=0.883 Sum_probs=25.1
Q ss_pred CceEEcccCCCCcc----cc-ccccCCCCcccccCCCC
Q 000516 798 VGTVTGKKCPKGLY----GT-FCKECPIGTYKDMEGSD 830 (1449)
Q Consensus 798 ~GTi~g~~CP~G~~----G~-fC~eCP~GtYK~~sGs~ 830 (1449)
.+.-.=.+||.|+| |. .|++||.|+|....|+.
T Consensus 6 ~~~~~C~~Cp~GtYq~~~g~~~C~~Cp~g~~T~~~Gs~ 43 (48)
T PF07699_consen 6 SGNNKCQPCPKGTYQDEEGQTSCTPCPPGSTTSSEGST 43 (48)
T ss_pred CCCCccCCCCCCccCCccCCccCccCcCCCccCCcCCc
Confidence 34445589999997 33 59999999998877753
No 9
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=79.45 E-value=1.4 Score=59.29 Aligned_cols=85 Identities=21% Similarity=0.180 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHhhcccccCCCccccccccccCcccc--chhhhhhhhhhhhhh
Q 000516 1289 DTIQLLITIMLLADLSITLLTLLEFYWISLGAFLAVLLVLPLSLLSPFPAGLNALFSKEPRRS--SLTRIYALWNATSLS 1366 (1449)
Q Consensus 1289 ~~~~l~i~~~ll~d~s~~ll~llq~y~~s~~~~~~~l~~lpl~~~~p~~ag~nalfs~~~rr~--~~~r~~~lwn~~s~~ 1366 (1449)
..|++....+||+=+.+++|-.|---+.++..-|++-|-| .+-+|-||--++ -.+=+-+|--.+++.
T Consensus 2171 a~~gvslaal~lt~~llls~RsLksn~~~I~~~l~~Al~l-----------~~L~Fv~gi~~nq~~CtvvailLhf~~~s 2239 (2531)
T KOG4289|consen 2171 AAVGVSLAALLLTFLLLLSLRSLKSNSHGIHFNLAAALGL-----------AQLVFVLGINQNQFYCTVVAILLHFTYLS 2239 (2531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhH-----------HHHHhhhhcccCchhhHHHHHHHHHHHhh
Confidence 5677777777777777777777776666766655443322 122455555555 344556677778888
Q ss_pred HHHHHhhhheeeeccccc
Q 000516 1367 NIVVAFISGICHYGFWFA 1384 (1449)
Q Consensus 1367 n~~~a~~~g~~~~~~~~~ 1384 (1449)
-..-+|+.|+--|-|-..
T Consensus 2240 tFaWlfl~gLhlYRml~e 2257 (2531)
T KOG4289|consen 2240 TFAWLFLEGLHLYRMLTE 2257 (2531)
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 888888888766765543
No 10
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=78.18 E-value=4.9 Score=52.81 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=14.7
Q ss_pred eeCccccccC-----CCCccccccceeeeee
Q 000516 37 QSGNWLHDLG-----SDLKDDFKSTTLNFVE 62 (1449)
Q Consensus 37 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 62 (1449)
++-+-||..- |..+-||-|--|-|-|
T Consensus 1014 ~~~alihk~Svncp~S~qdM~fPsPFFVFGE 1044 (1282)
T KOG0921|consen 1014 QSSALIHKYSVNCPNSRQEMDFPSPFFVFGE 1044 (1282)
T ss_pred chhhhhhhhcccCCCcccccCCCCceeeech
Confidence 3445566543 3445566666666666
No 11
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=69.46 E-value=3 Score=41.53 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=19.5
Q ss_pred cccccCCCCcccccCCCCCCCcccCCCCC
Q 000516 813 TFCKECPIGTYKDMEGSDESLCTPCSLEL 841 (1449)
Q Consensus 813 ~fC~eCP~GtYK~~sGs~~~~C~pCp~~~ 841 (1449)
.+|++|..|+|++.. ...|.+|+.++
T Consensus 4 ~~Ct~C~~g~~~~~~---~~~C~~C~~~~ 29 (96)
T PTZ00382 4 AVCTSCDSDKKPNKD---GSGCVLCSVGN 29 (96)
T ss_pred cccCcCCCCCccCCC---CCcCCcCCCCC
Confidence 468999999988753 35699998533
No 12
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=60.38 E-value=13 Score=37.63 Aligned_cols=55 Identities=13% Similarity=0.278 Sum_probs=42.0
Q ss_pred cccCCChhHHHHHHHHHhHHhhhh-ccc------------------------cchhhhHHHHHHHHhcCcccccccCeEE
Q 000516 1123 LGQHVPATVWSRLVDGLNAQLRTV-RQG------------------------SIRSALVPVIDWINSHGNPQLEFHGVKI 1177 (1449)
Q Consensus 1123 ~~q~v~~~~w~rfVa~LN~qlr~V-r~g------------------------slr~~l~~vi~~l~~h~n~~l~~~gvrv 1177 (1449)
++..+++++|+++|..+|..++.- ..- .-++.+..+=+||++.|++.+..+|+++
T Consensus 26 L~~~is~~ef~~iI~~IN~~l~~a~~~~~~~~~~~~~l~~lt~~l~~~~~~~~~~~~~~~le~~l~~~N~~~~~~~gi~i 105 (118)
T PF10256_consen 26 LSGYISPEEFEEIINTINQILKEAFEPISWRNIIENILGCLTLGLSSLCFKTHYKRKLRELEKYLEQLNEELFKPRGIKI 105 (118)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcEE
Confidence 566789999999999999998876 221 2223445566799999888999999865
No 13
>PF05268 GP38: Phage tail fibre adhesin Gp38; InterPro: IPR007932 This entry is represented by Bacteriophage T2, Gp38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains several Gp38 proteins from T-even-like phages. Gp38, together with a second phage protein, Gp57, catalyses the organisation of Gp37 but is absent from the phage particle. Gp37 is responsible for receptor recognition [].
Probab=59.27 E-value=33 Score=39.20 Aligned_cols=37 Identities=32% Similarity=0.558 Sum_probs=21.4
Q ss_pred cccCCCCCCCCCCCCCCCCccEEEEEEeeeeee--ccEEE
Q 000516 220 SYGSKGGGTSAEYQYGGNGGGRIKLLVKDMLYL--NGSVT 257 (1449)
Q Consensus 220 ~~GSGGG~~~~~~~~GGaGGG~I~I~A~~~l~l--~G~I~ 257 (1449)
.+|-||-+ +.....|.+||=+|+=....+|.+ +|.|-
T Consensus 114 ~yGRGGnG-s~~~~~g~~GG~~I~N~iG~rLRI~N~GaIA 152 (260)
T PF05268_consen 114 MYGRGGNG-SGSNSAGAAGGHAIQNDIGGRLRINNNGAIA 152 (260)
T ss_pred EEecCCCC-CCCCCCccccceeeecCCcceEEEecCCEEe
Confidence 44555433 334466778887887655555555 45554
No 14
>KOG4069 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.50 E-value=26 Score=37.12 Aligned_cols=80 Identities=24% Similarity=0.368 Sum_probs=54.9
Q ss_pred CCCCchhhhhhcHHHHHHHHHHHhhhhhhh-------hhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhh---
Q 000516 974 YSPPNAIIEIVYEDAFNRFIDEINSVAAYD-------WWEGSIHSILTVLAYPCAWSWKQWRRRNKIHRLQEYVKSE--- 1043 (1449)
Q Consensus 974 ~spP~~i~~IVyed~Fn~Fad~IN~laay~-------~We~~l~~ILsvl~YPlaw~wlq~rRrkK~~rL~efv~se--- 1043 (1449)
...|..+++.|..+.|+.=+..+|++.|=. -+|+. +=++.+|-.|.--.. -=+||+++|+||+.++
T Consensus 45 ~~~pa~le~~i~R~vfE~Ti~rlN~~yAeAE~~~~qty~Egc---lgC~TaY~iy~ctet-hYek~L~klskfl~~qNe~ 120 (154)
T KOG4069|consen 45 AEYPARLEEKIPRDVFENTIVRLNRIYAEAEAITPQTYFEGC---LGCFTAYAIYACTET-HYEKKLDKLSKFLNRQNEE 120 (154)
T ss_pred ecCcHHHhccCcHHHHHHHHHHHHHHHHHHHhcCCcchHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhh
Confidence 357899999999999999999999986432 36665 345666665553333 2357899999999853
Q ss_pred -cCcc--ccccchhhhc
Q 000516 1044 -YDHS--CLRSCRSRAL 1057 (1449)
Q Consensus 1044 -yd~~--clrs~rsral 1057 (1449)
|.|- -+|++-.|.|
T Consensus 121 IY~~~Gl~l~dP~eRGL 137 (154)
T KOG4069|consen 121 IYHHVGLHLRDPMERGL 137 (154)
T ss_pred hccccceeecCchhhce
Confidence 6664 3455555543
No 15
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=56.04 E-value=11 Score=37.09 Aligned_cols=32 Identities=31% Similarity=0.873 Sum_probs=23.8
Q ss_pred ccccccCCCCcccccCCC--CCCCcccCCCCCCC
Q 000516 812 GTFCKECPIGTYKDMEGS--DESLCTPCSLELLP 843 (1449)
Q Consensus 812 G~fC~eCP~GtYK~~sGs--~~~~C~pCp~~~~p 843 (1449)
+.-|..||+|+|...... ....|.|||+..+.
T Consensus 11 ~~cC~~C~pG~~~~~~C~~~~~t~C~~C~~g~ys 44 (98)
T cd00185 11 GLCCDQCPPGTYLSKDCTPGSDTVCEPCPPGTYT 44 (98)
T ss_pred CCCCCCCCCCccCCCcCCCCCCCeecCCCCCCcc
Confidence 446999999999876432 23689999986654
No 16
>PF15496 DUF4646: Domain of unknown function (DUF4646)
Probab=55.71 E-value=13 Score=38.50 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=33.7
Q ss_pred cCCChhHHHHHHHHHhHHhhhhcccc-----------------------------chhhhHHHHHHHHhcCccccccc
Q 000516 1125 QHVPATVWSRLVDGLNAQLRTVRQGS-----------------------------IRSALVPVIDWINSHGNPQLEFH 1173 (1449)
Q Consensus 1125 q~v~~~~w~rfVa~LN~qlr~Vr~gs-----------------------------lr~~l~~vi~~l~~h~n~~l~~~ 1173 (1449)
-.|..+.|.||+.+|+.-.++-...+ ..+.--+|-+.|++||+.+|+.-
T Consensus 45 ~DVs~eDW~~F~~dl~~aa~ls~~~~~~~~~~~~~~~v~~Gi~~~~v~~~~~~~~~~~k~~~v~~~i~~WN~~FF~PR 122 (123)
T PF15496_consen 45 HDVSEEDWTRFLNDLSEAASLSPSQSIVAGVGPIVMGVGFGIPAYLVAKAIRKAMKEKKRGEVESTIDQWNEGFFRPR 122 (123)
T ss_pred cCCCHHHHHHHHHHHHHHHhcCcccceeeeeccccccccccchhhhhhHhhhhcccccchHHHHHHHHHHHHHhccCC
Confidence 35999999999999999844433222 22223356678888888888754
No 17
>PF15496 DUF4646: Domain of unknown function (DUF4646)
Probab=53.81 E-value=17 Score=37.65 Aligned_cols=70 Identities=14% Similarity=0.269 Sum_probs=48.5
Q ss_pred hhhhhcHHHHHHHHHHHhhhhhhhhhhhhhhhhhh--------hhccchhhHHHHHHHHHHHHHHHHHHHhhcCccccc
Q 000516 980 IIEIVYEDAFNRFIDEINSVAAYDWWEGSIHSILT--------VLAYPCAWSWKQWRRRNKIHRLQEYVKSEYDHSCLR 1050 (1449)
Q Consensus 980 i~~IVyed~Fn~Fad~IN~laay~~We~~l~~ILs--------vl~YPlaw~wlq~rRrkK~~rL~efv~seyd~~clr 1050 (1449)
...=|.++++.+|.++++.-++...+|.++-...- +..|=.++.....+++||-.++.++|. ..|+.||+
T Consensus 43 ~~~DVs~eDW~~F~~dl~~aa~ls~~~~~~~~~~~~~~~v~~Gi~~~~v~~~~~~~~~~~k~~~v~~~i~-~WN~~FF~ 120 (123)
T PF15496_consen 43 ASHDVSEEDWTRFLNDLSEAASLSPSQSIVAGVGPIVMGVGFGIPAYLVAKAIRKAMKEKKRGEVESTID-QWNEGFFR 120 (123)
T ss_pred hhcCCCHHHHHHHHHHHHHHHhcCcccceeeeeccccccccccchhhhhhHhhhhcccccchHHHHHHHH-HHHHHhcc
Confidence 34457789999999999999888877754332211 334445555666677777778888886 56666665
No 18
>KOG1836 consensus Extracellular matrix glycoprotein Laminin subunits alpha and gamma [Extracellular structures]
Probab=53.18 E-value=14 Score=52.13 Aligned_cols=42 Identities=33% Similarity=0.699 Sum_probs=34.6
Q ss_pred CceEEcccCCCCccccccccCCCCcccccCCCC--CCCcccCCC
Q 000516 798 VGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSD--ESLCTPCSL 839 (1449)
Q Consensus 798 ~GTi~g~~CP~G~~G~fC~eCP~GtYK~~sGs~--~~~C~pCp~ 839 (1449)
.-++.-|.||+||.|.+|++|.-|+|=+..+-+ ...|++|+-
T Consensus 794 ~~~~iCk~Cp~gytG~rCe~c~dgyfg~p~~~~~~~~~c~~c~c 837 (1705)
T KOG1836|consen 794 ILEVVCKNCPPGYTGLRCEECADGYFGNPLGHDGDVRPCQSCQC 837 (1705)
T ss_pred ccceecCCCCCCCcccccccCCCccccCCCCCCCCcccCcccee
Confidence 566777889999999999999999998865422 258999995
No 19
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=48.79 E-value=42 Score=44.92 Aligned_cols=25 Identities=8% Similarity=0.137 Sum_probs=12.5
Q ss_pred EcCCceEEcccCCceEEEEEeeeEEecc
Q 000516 111 ILPKISIVCPVEGCKITFNMSGNINMGQ 138 (1449)
Q Consensus 111 I~~~v~l~c~~~Gc~i~v~~sG~~tl~~ 138 (1449)
+..+=++.|...| .|++.--|+|+.
T Consensus 1066 LF~SrKVqsdgq~---IV~VDdWIklqI 1090 (1282)
T KOG0921|consen 1066 LFGSRKVQSDGQG---IVRVDDWIKLQI 1090 (1282)
T ss_pred hhhhhhccccCcc---eEEeeceeeEec
Confidence 3344455555554 455555555554
No 20
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=48.72 E-value=19 Score=42.05 Aligned_cols=36 Identities=28% Similarity=0.631 Sum_probs=28.6
Q ss_pred EEcccCCCCccc---------cccccCCCCcccccCCCCCCCcccCCC
Q 000516 801 VTGKKCPKGLYG---------TFCKECPIGTYKDMEGSDESLCTPCSL 839 (1449)
Q Consensus 801 i~g~~CP~G~~G---------~fC~eCP~GtYK~~sGs~~~~C~pCp~ 839 (1449)
++=..|+|||.. .=|+-|++|||.... ...|+.|+.
T Consensus 217 v~idsC~PGfG~N~~~h~~C~~CCVvCsPgTysp~~---~~~C~~C~~ 261 (271)
T PF07354_consen 217 VRIDSCRPGFGKNDILHSDCPSCCVVCSPGTYSPDD---DVHCQQCNS 261 (271)
T ss_pred EEeeccCCCCCcCcccCCCCCCeeEECCCcccCCCC---CceEEecCc
Confidence 556889999962 249999999998764 469999995
No 21
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=48.34 E-value=11 Score=32.66 Aligned_cols=21 Identities=29% Similarity=0.718 Sum_probs=19.0
Q ss_pred ccCCCCccccccccCCCCccc
Q 000516 804 KKCPKGLYGTFCKECPIGTYK 824 (1449)
Q Consensus 804 ~~CP~G~~G~fC~eCP~GtYK 824 (1449)
..|++++.|..|.+|+.|+|-
T Consensus 20 C~C~~~~~G~~C~~C~~g~~g 40 (46)
T smart00180 20 CECKPNVTGRRCDRCAPGYYG 40 (46)
T ss_pred EECCCCCCCCCCCcCCCCcCC
Confidence 459999999999999999996
No 22
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=48.28 E-value=11 Score=33.02 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=20.0
Q ss_pred ccCCCCccccccccCCCCcccc
Q 000516 804 KKCPKGLYGTFCKECPIGTYKD 825 (1449)
Q Consensus 804 ~~CP~G~~G~fC~eCP~GtYK~ 825 (1449)
..|++++.|..|++|+.|+|..
T Consensus 21 C~C~~~~~G~~C~~C~~g~~~~ 42 (50)
T cd00055 21 CECKPNTTGRRCDRCAPGYYGL 42 (50)
T ss_pred EeCCCcCCCCCCCCCCCCCccC
Confidence 5699999999999999999965
No 23
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=42.34 E-value=73 Score=33.97 Aligned_cols=69 Identities=22% Similarity=0.319 Sum_probs=42.2
Q ss_pred EEEeeeeEecCcEEEEecccEEEcCCceEEcccCCceEEE--------------EEeeeEEeccCcEEEeceEEEEEeeE
Q 000516 89 CLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITF--------------NMSGNINMGQYAAIVAGSVVVSAANL 154 (1449)
Q Consensus 89 C~~~~~~~l~~d~~i~g~gnl~I~~~v~l~c~~~Gc~i~v--------------~~sG~~tl~~~s~ivagsv~l~A~ni 154 (1449)
+.|-..+.++.++.|...++++|-+++.+ .++|.|.- ...+.++|++++.|-++.+.+ .++
T Consensus 63 i~IG~~v~I~~~~~i~~~~~i~IG~~v~I---g~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~--~gv 137 (169)
T cd03357 63 IHIGDNFYANFNCTILDVAPVTIGDNVLI---GPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIIL--PGV 137 (169)
T ss_pred CEECCCceEcCCEEEeccCcEEECCCCEE---CCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEe--CCC
Confidence 34555566666666666677777777766 45555431 235678888888776666554 345
Q ss_pred EecCCCeE
Q 000516 155 TMDLNSSI 162 (1449)
Q Consensus 155 ~i~~~s~I 162 (1449)
+|.++..|
T Consensus 138 ~Ig~~~~V 145 (169)
T cd03357 138 TIGDNSVI 145 (169)
T ss_pred EECCCCEE
Confidence 55555554
No 24
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=41.25 E-value=91 Score=37.87 Aligned_cols=8 Identities=75% Similarity=1.448 Sum_probs=4.0
Q ss_pred CCCCCeee
Q 000516 298 GGGGGRVS 305 (1449)
Q Consensus 298 GGGGGRI~ 305 (1449)
||||||-.
T Consensus 452 gggggrg~ 459 (465)
T KOG3973|consen 452 GGGGGRGG 459 (465)
T ss_pred CCCCCCcc
Confidence 34466644
No 25
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=39.62 E-value=27 Score=36.11 Aligned_cols=21 Identities=29% Similarity=0.686 Sum_probs=9.6
Q ss_pred c-chhHHHHHHHHHHHHHHHHh
Q 000516 890 W-PFVLLLSCILVLLALLLSTL 910 (1449)
Q Consensus 890 ~-~F~LlL~~llvLLalv~s~~ 910 (1449)
| +|+||+++++++|+++....
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHH
Confidence 6 44444444444444444333
No 26
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=39.51 E-value=45 Score=37.54 Aligned_cols=58 Identities=31% Similarity=0.432 Sum_probs=38.9
Q ss_pred cceEEEeeeeEecCcEEEEecc------cEEEcCCceEEcccCCceEEEEEeeeEEeccCcEEEeceEEEE
Q 000516 86 NTTCLLNSNLYLNYDLYIYGTG------NLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVVS 150 (1449)
Q Consensus 86 ~t~C~~~~~~~l~~d~~i~g~g------nl~I~~~v~l~c~~~Gc~i~v~~sG~~tl~~~s~ivagsv~l~ 150 (1449)
++||+|-.+++|-..|.+=|+| -=+|-++|.+ .+| ..+-|+++|++|++|=|++|++.
T Consensus 91 geta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~I---Gag----AkILG~I~IGd~akIGA~sVVlk 154 (194)
T COG1045 91 GETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYI---GAG----AKILGNIEIGDNAKIGAGSVVLK 154 (194)
T ss_pred cceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEE---CCC----CEEEcceEECCCCEECCCceEcc
Confidence 3455555555555555544443 2366677766 677 34679999999999999999885
No 27
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=39.07 E-value=74 Score=34.86 Aligned_cols=61 Identities=13% Similarity=0.207 Sum_probs=40.5
Q ss_pred cEEEEecccEEEcCCceEEcccCCceEEEEEeeeEEeccCcEEEeceEEEEEeeEEecCCCeEe
Q 000516 100 DLYIYGTGNLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVVSAANLTMDLNSSIN 163 (1449)
Q Consensus 100 d~~i~g~gnl~I~~~v~l~c~~~Gc~i~v~~sG~~tl~~~s~ivagsv~l~A~ni~i~~~s~In 163 (1449)
..++.+.++++|-+++.+ ..+|.+.+...+.+++++++.|-.+.......+++|.++..|.
T Consensus 35 pf~~~~~~~I~iG~~v~i---~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig 95 (192)
T PRK09677 35 PFYIRNDGSINFGEGFTS---GVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIA 95 (192)
T ss_pred CEEEcCCCeEEECCceEE---CCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEEC
Confidence 346667788888888766 6777776666778888887777444433334566666666554
No 28
>PF14946 DUF4501: Domain of unknown function (DUF4501)
Probab=38.96 E-value=80 Score=34.87 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=21.3
Q ss_pred HhCCCc-chhHHHHHHHHHHHHHHHHhhhh
Q 000516 885 TFGGPW-PFVLLLSCILVLLALLLSTLRIK 913 (1449)
Q Consensus 885 tfGGp~-~F~LlL~~llvLLalv~s~~R~K 913 (1449)
.+|||. ...|||=.|+|-++|+++++-.-
T Consensus 83 ~~g~P~vAASL~LgTffIS~~LilSvA~FF 112 (180)
T PF14946_consen 83 HTGGPQVAASLFLGTFFISLGLILSVASFF 112 (180)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 679999 45555557788788999887643
No 29
>KOG4611 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.80 E-value=48 Score=40.01 Aligned_cols=78 Identities=33% Similarity=0.678 Sum_probs=48.1
Q ss_pred EEcccCCCCcc-----c--cccccCCCCcccccCCCCCCCcccCCCCC--CCCcceeEEeeccccc---CCCCCcccccC
Q 000516 801 VTGKKCPKGLY-----G--TFCKECPIGTYKDMEGSDESLCTPCSLEL--LPRRANFIYVRGRGVS---QPFCPYECISE 868 (1449)
Q Consensus 801 i~g~~CP~G~~-----G--~fC~eCP~GtYK~~sGs~~~~C~pCp~~~--~p~ra~~~y~~g~G~~---~~~CpY~C~sd 868 (1449)
...+.|.+--- | ..|++||-||... +++--|..|.+.. .|++..-+.-...|.- ...| -.|-++
T Consensus 31 mmsckcsknqieifrngfvptceecpegtlss---pdqtgclncnngtchcpsqstlifrdasgnlltndafc-gncasg 106 (747)
T KOG4611|consen 31 MMSCKCSKNQIEIFRNGFVPTCEECPEGTLSS---PDQTGCLNCNNGTCHCPSQSTLIFRDASGNLLTNDAFC-GNCASG 106 (747)
T ss_pred ceecccccchhhHhhcCCCCccccCCCcccCC---CccCCceecCCCccCCCCcceEEEEcCCCCeecccccc-cccccc
Confidence 45577876631 2 3599999999765 4677799998754 3444433332222221 2357 468899
Q ss_pred ccCC-----CCCCChHHHH
Q 000516 869 KYRM-----PKCYTPLEEL 882 (1449)
Q Consensus 869 ky~~-----p~C~tplE~l 882 (1449)
+||. ..|-|.-.|.
T Consensus 107 fyrndngyctkcetscsem 125 (747)
T KOG4611|consen 107 FYRNDNGYCTKCETSCSEM 125 (747)
T ss_pred ceECCCcccccccccHhhh
Confidence 9876 5666665554
No 30
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=34.77 E-value=39 Score=39.63 Aligned_cols=59 Identities=32% Similarity=0.473 Sum_probs=34.7
Q ss_pred cccceEEEeeeeEecCcEEEEecc------cEEEcCCceEEcccCCceEEEEEeeeEEeccCcEEEeceEEE
Q 000516 84 SLNTTCLLNSNLYLNYDLYIYGTG------NLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVV 149 (1449)
Q Consensus 84 s~~t~C~~~~~~~l~~d~~i~g~g------nl~I~~~v~l~c~~~Gc~i~v~~sG~~tl~~~s~ivagsv~l 149 (1449)
..+.+|+|-+.+.|..++.|-|++ .-+|-++|.+ .+||. +.|+++|++++.|-+++++.
T Consensus 163 vIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~I---Gaga~----Ilggv~IG~~a~IGAgSvV~ 227 (273)
T PRK11132 163 VIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMI---GAGAK----ILGNIEVGRGAKIGAGSVVL 227 (273)
T ss_pred EECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEE---cCCCE----EcCCCEECCCCEECCCCEEC
Confidence 444556666666666666665543 2355555555 45533 34677777777776666655
No 31
>PF05281 Secretogranin_V: Neuroendocrine protein 7B2 precursor (Secretogranin V); InterPro: IPR007945 Mature peptide hormones and neuropeptides are typically synthesised from much larger precursors and require several post-translational processing steps--including proteolytic cleavage--for the formation of the bioactive species. The subtilisin-related proteolytic enzymes that accomplish neuroendocrine-specific cleavages are known as prohormone convertases 1 and 2 (PC1 and PC2), which belong to MEROPS peptidase family S8B. The cell biology of these proteases within the regulated secretory pathway of neuroendocrine cells is complex, and they are themselves initially synthesised as inactive precursor molecules. ProPC1 propeptide cleavage occurs rapidly in the endoplasmic reticulum, yet its major site of action on prohormones takes place later in the secretory pathway. PC1 undergoes an interesting carboxyl terminal processing event whose function appears to be to activate the enzyme. ProPC2, on the other hand, exhibits comparatively long initial folding times and exits the endoplasmic reticulum without propeptide cleavage, in association with the neuroendocrine-specific protein 7B2. Once the proPC2/7B2 complex arrives at the trans-Golgi network, 7B2 is internally cleaved into two domains, the 21kDa fragment and a carboxy-terminal 31 residue peptide. PC2 propeptide removal occurs in the maturing secretory granule, most likely through autocatalysis, and 7B2 association does not appear to be directly required for this cleavage event. However, if proPC2 has not encountered 7B2 intracellularly, it cannot generate a catalytically active mature species. The molecular mechanism behind the intriguing intracellular association of 7B2 and proPC2 is still unknown, but may involve conformational rearrangement or stabilisation of a proPC2 conformer mediated by a 36-residue internal segment of 21kDa 7B2. This family represents, 7B2 (secretogranin V), which is the molecular escort protein for PC2. 7B2 is a bifunctional protein with an N-terminal activation domain and a C-terminal inhibitory domain (MEROPS inhibitor family I21, clan I-) separated by a furin cleavage site []. Although 7B2 represents a potent inhibitor of PC2, there is an absolute requirement of 7B2 for the activation of PC2, which is synthesised as a zymogen. Both the full length, 27 kDa, and the C-terminal peptide (CT domain) derived from intramolecular cleavage of 7B2 are potent inhibitors of PC2. Studies have shown that the active peptide in the CT domain to be LLRVHK, active in the nanomolar range not only against PC2 but also PC1 [, ]. Knock-out studies have shown that the PC2 nulls are not phenotypically equivalent to the 7B2 nulls, which suggests that 7B2 may have other activities in addition to being the activator of PC2 []. 7B2 exhibits both structural and functional homology to proSAAS (IPR010832 from INTERPRO), which is the PC1 binding protein. The CT domain of proSAAS contains the same inhibitor hexapeptide as 7B2, consequently both 7B2 and proSAAS are two members of a homologous family of prohormone convertase inhibitor proteins. ; GO: 0007218 neuropeptide signaling pathway, 0030141 stored secretory granule
Probab=32.50 E-value=46 Score=37.76 Aligned_cols=92 Identities=26% Similarity=0.463 Sum_probs=55.2
Q ss_pred CCCcccceeeeeeEEEccCCcCCCCCcccCCceEEcccCCCCc--cccccc---cCCCCcccccCCCCCCCcccCCCCCC
Q 000516 768 SGVEYVPVATISGSINSSGGAADNTGLFGEVGTVTGKKCPKGL--YGTFCK---ECPIGTYKDMEGSDESLCTPCSLELL 842 (1449)
Q Consensus 768 ~g~~y~pia~~~G~I~~~GG~~~~~g~~G~~GTi~g~~CP~G~--~G~fC~---eCP~GtYK~~sGs~~~~C~pCp~~~~ 842 (1449)
-++||.+=.+.-|.-.++||++.+.+..+..|.|-...=.+-- .=.+|. +||+|+= . ...|.. ++
T Consensus 48 Rd~E~l~hssLwG~q~isGGagEG~q~L~~~~~i~n~~~~ktd~~lPaYCnPPNPCPvGyt-~-----~dgCle----~f 117 (208)
T PF05281_consen 48 RDQEYLQHSSLWGHQYISGGAGEGPQHLGPEGNIPNIKIVKTDNNLPAYCNPPNPCPVGYT-A-----EDGCLE----NF 117 (208)
T ss_pred cccccccccccCCceeeeCCCCccchhcCccCCcCcccccccccCCCCCCCCCCCCCCCcc-c-----ccCccc----CC
Confidence 3567777777888889999999887777777665331111100 013565 6999973 2 223433 45
Q ss_pred CCcceeEEeecccccCCCCCcccccCccCCCCCC
Q 000516 843 PRRANFIYVRGRGVSQPFCPYECISEKYRMPKCY 876 (1449)
Q Consensus 843 p~ra~~~y~~g~G~~~~~CpY~C~sdky~~p~C~ 876 (1449)
.+-|.|- |. -.....| -| |--||..|-
T Consensus 118 EnTAeFS--Re-yQa~QdC--~C--D~EHMf~C~ 144 (208)
T PF05281_consen 118 ENTAEFS--RE-YQAAQDC--MC--DTEHMFDCP 144 (208)
T ss_pred ccHHHhh--HH-HHhcCcc--CC--CcccccCCc
Confidence 5555553 22 3345567 67 457998996
No 32
>cd00064 FU Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
Probab=31.24 E-value=36 Score=29.30 Aligned_cols=10 Identities=40% Similarity=0.993 Sum_probs=5.3
Q ss_pred ccccCCCCcc
Q 000516 814 FCKECPIGTY 823 (1449)
Q Consensus 814 fC~eCP~GtY 823 (1449)
.|..|+.|+|
T Consensus 16 ~C~~C~~~~~ 25 (49)
T cd00064 16 QCTSCRHGFY 25 (49)
T ss_pred cCccCcCccC
Confidence 3555555554
No 33
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=31.09 E-value=21 Score=30.90 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=18.6
Q ss_pred ccCCCCccccccccCCCCccccc
Q 000516 804 KKCPKGLYGTFCKECPIGTYKDM 826 (1449)
Q Consensus 804 ~~CP~G~~G~fC~eCP~GtYK~~ 826 (1449)
..|++++.|.+|.+|..|+|...
T Consensus 20 C~C~~~~~G~~C~~C~~g~~~~~ 42 (49)
T PF00053_consen 20 CVCKPGTTGPRCDQCKPGYFGLP 42 (49)
T ss_dssp ESBSTTEESTTS-EE-TTEECST
T ss_pred EeccccccCCcCcCCCCcccccc
Confidence 46999999999999999999763
No 34
>PF05268 GP38: Phage tail fibre adhesin Gp38; InterPro: IPR007932 This entry is represented by Bacteriophage T2, Gp38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains several Gp38 proteins from T-even-like phages. Gp38, together with a second phage protein, Gp57, catalyses the organisation of Gp37 but is absent from the phage particle. Gp37 is responsible for receptor recognition [].
Probab=30.78 E-value=96 Score=35.72 Aligned_cols=41 Identities=29% Similarity=0.663 Sum_probs=22.5
Q ss_pred EEEEecCCC-CCCCcccCCccEEEEE----EEeecceEEEeecCCC
Q 000516 255 SVTAEGGDG-GLKGGGGSGGSIYVLA----VKLKGYGFISAAGGRG 295 (1449)
Q Consensus 255 ~I~AnGg~g-~~~GGGGSGGSI~L~a----~~l~g~G~isA~GG~G 295 (1449)
.+.--|+++ .....|.+||...=.. .++..+|.|..-||.|
T Consensus 113 t~yGRGGnGs~~~~~g~~GG~~I~N~iG~rLRI~N~GaIAgGGGGG 158 (260)
T PF05268_consen 113 TMYGRGGNGSGSNSAGAAGGHAIQNDIGGRLRINNNGAIAGGGGGG 158 (260)
T ss_pred EEEecCCCCCCCCCCccccceeeecCCcceEEEecCCEEecCCCCc
Confidence 344445666 3456677777754222 4566677775544443
No 35
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=29.77 E-value=60 Score=47.29 Aligned_cols=15 Identities=33% Similarity=0.742 Sum_probs=8.8
Q ss_pred EcccCCCCccccccc
Q 000516 802 TGKKCPKGLYGTFCK 816 (1449)
Q Consensus 802 ~g~~CP~G~~G~fC~ 816 (1449)
+-+.||+.|-|.-|+
T Consensus 3886 y~CkCpsqysG~~CE 3900 (4289)
T KOG1219|consen 3886 YKCKCPSQYSGNHCE 3900 (4289)
T ss_pred eEEeCcccccCcccc
Confidence 336666666665554
No 36
>PLN02357 serine acetyltransferase
Probab=29.53 E-value=62 Score=39.43 Aligned_cols=56 Identities=34% Similarity=0.443 Sum_probs=31.6
Q ss_pred ceEEEeeeeEecCcEEEEecc------cEEEcCCceEEcccCCceEEEEEeeeEEeccCcEEEeceEEE
Q 000516 87 TTCLLNSNLYLNYDLYIYGTG------NLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVV 149 (1449)
Q Consensus 87 t~C~~~~~~~l~~d~~i~g~g------nl~I~~~v~l~c~~~Gc~i~v~~sG~~tl~~~s~ivagsv~l 149 (1449)
.+|+|-..+.|..++.|.|.| .-.|-++|.+ .+|+ .+.|+++|++++.|-+++++.
T Consensus 251 e~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~I---GagA----~IlggV~IGdga~IGAgSVV~ 312 (360)
T PLN02357 251 ETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLI---GAGT----CILGNITIGEGAKIGAGSVVL 312 (360)
T ss_pred CCCEECCCCEEeCCceecCccccCCccCceeCCCeEE---CCce----EEECCeEECCCCEECCCCEEC
Confidence 345555555555555554432 2445555544 4442 245777777777777776655
No 37
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.49 E-value=40 Score=37.56 Aligned_cols=60 Identities=28% Similarity=0.350 Sum_probs=31.1
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhccCCCCcccccccccccccCccc---hhhhhhccc-----ccccccc
Q 000516 891 PFVLLLSCILVLLALLLSTLRIKLVGSSPSYREHSIERHSRHHFPYL---LSLSEVRGT-----RAEETQS 953 (1449)
Q Consensus 891 ~F~LlL~~llvLLalv~s~~R~K~~g~d~l~~~~~~~~~~~~sfp~L---~Sl~Ev~~~-----r~eDL~~ 953 (1449)
+|+++| .+.++++ ++.++|.--.+.++.+...+.+ .++.+|... ++|||..+. ..||++|
T Consensus 14 ~f~iLL-Aln~l~~-~~i~~~vlsp~ee~t~~~~a~~-~~~~~fqitttr~~LN~li~syl~~~~tee~~Y 81 (197)
T COG4698 14 LFFILL-ALNTLLA-VLIALFVLSPREEPTHLEDASE-KSEKSFQITTTRSQLNELINSYLEDYQTEEMPY 81 (197)
T ss_pred HHHHHH-HHHHHHH-HHhheeeccCCCCCchhhccCc-ccceeEEEEccHHHHHHHHHHHHHHhhhccCCe
Confidence 554444 4555555 4445554333333455444443 356666544 568887776 3445554
No 38
>PRK09752 adhesin; Provisional
Probab=28.15 E-value=2e+03 Score=31.22 Aligned_cols=142 Identities=15% Similarity=0.229 Sum_probs=75.1
Q ss_pred CCCCCcceEEeec---------cccEEEecCCcccccccccccCCCCcceeeEEEEece-Eee----ccceeeeEEE-ee
Q 000516 329 ENAGAAGTNFNAY---------LRSLRVSNDNVTTETETPLLDFPTRPIWSNVFVENNA-KVL----VPLLWTRVQV-RG 393 (1449)
Q Consensus 329 ~naGaAGTiy~~~---------~~sL~vdN~n~~t~t~t~ll~fp~~plw~~v~v~n~a-~v~----vPl~wsrvqv-~g 393 (1449)
.++++.|-+|... -++|+|-|.......|.+ ...+ +.||--+ .+. .-..|.-||| .|
T Consensus 283 ~~~~~GG~~y~~~~~~~f~ia~g~~l~ig~~~~~~~~ds~----a~t~----~i~k~g~g~~~~n~d~~~~~g~~~i~~g 354 (1250)
T PRK09752 283 PSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSI----AGTG----LITKTGSGDLVLNADNNDFTGEMQIENG 354 (1250)
T ss_pred CCcCcccEEEeecceeEEEecCCCEEEEccccCcCccccc----cCcc----eEEEeCCceEEEecccccceeeEEEecc
Confidence 3567777777753 379999999877788875 3333 5566554 232 2345677777 45
Q ss_pred EeEeeecce-EEeccCCC---Cccceeeehhhhcccc-ceEEEeeceee-ee-eeeeeccceEEEeCCcceEEee-----
Q 000516 394 QISLYRGGS-IIFGLSEY---PVSEFELVAEELLMSD-SVIKVFGAFRV-AI-KMLLMWNSKILIDGGGNTIVTT----- 461 (1449)
Q Consensus 394 ~i~l~~g~~-~~Fgl~~~---~~sefel~a~ellms~-s~ikv~Gal~~-~~-km~lm~~s~i~idg~~~~~v~~----- 461 (1449)
.+.|-+-.+ ..-|-+|- |+.-|-|+.....-++ .....-|--+- .| .+.=..|..+.||.+++..|-.
T Consensus 355 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (1250)
T PRK09752 355 EVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDKYQNQAELNVGSTQQTFVHSLTGFQNGTLNIDAGGNVTVNQGSFAG 434 (1250)
T ss_pred EEEEeechhhcccccccccCCchhhceeeeccccChhhheeeccCcchheeeeehhccccceEEecCCCCEEEecCccce
Confidence 555544433 22332222 4444554443322221 11111121111 12 2334568888999988766533
Q ss_pred eeeeccceEEEeccceE
Q 000516 462 SVLEVRNLVVLTENSVI 478 (1449)
Q Consensus 462 s~le~snl~vl~~~svi 478 (1449)
++--..-|.|-+++|-+
T Consensus 435 ~~~~~~~~~~~~~~~~~ 451 (1250)
T PRK09752 435 TIEGAGQLTIAQNGSYV 451 (1250)
T ss_pred eeeccceEEEeecCcEE
Confidence 33444455555555544
No 39
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=27.97 E-value=1.4e+02 Score=33.62 Aligned_cols=67 Identities=24% Similarity=0.292 Sum_probs=34.8
Q ss_pred EeeeeEecCcEEEEecccEEEcCCceEEcccCCceEEE--------------EEeeeEEeccCcEEEeceEEEEEeeEEe
Q 000516 91 LNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITF--------------NMSGNINMGQYAAIVAGSVVVSAANLTM 156 (1449)
Q Consensus 91 ~~~~~~l~~d~~i~g~gnl~I~~~v~l~c~~~Gc~i~v--------------~~sG~~tl~~~s~ivagsv~l~A~ni~i 156 (1449)
|-..+.++.++.|...++++|-+++.+ .++|.|.. .....++|++++.|-++++.. .+++|
T Consensus 78 IG~~v~In~~~~I~d~~~I~IGd~v~I---g~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~--~gv~I 152 (203)
T PRK09527 78 IGRNFYANFNLTIVDDYTVTIGDNVLI---APNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVIN--PGVTI 152 (203)
T ss_pred EcCCcEECCCcEEecCCCEEECCCCEE---CCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEc--CCCEE
Confidence 333344444444555566777766666 45555442 122347777777776655443 23444
Q ss_pred cCCCeE
Q 000516 157 DLNSSI 162 (1449)
Q Consensus 157 ~~~s~I 162 (1449)
.+++.|
T Consensus 153 G~~~vI 158 (203)
T PRK09527 153 GDNSVI 158 (203)
T ss_pred CCCCEE
Confidence 444443
No 40
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=27.85 E-value=1.7e+02 Score=28.91 Aligned_cols=64 Identities=19% Similarity=0.270 Sum_probs=35.3
Q ss_pred eeeEecCcEEEEecccEEEcCCceEEcccCCceEE-----------EEEeeeEEeccCcEEEeceEEEEEeeEEecCCCe
Q 000516 93 SNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKIT-----------FNMSGNINMGQYAAIVAGSVVVSAANLTMDLNSS 161 (1449)
Q Consensus 93 ~~~~l~~d~~i~g~gnl~I~~~v~l~c~~~Gc~i~-----------v~~sG~~tl~~~s~ivagsv~l~A~ni~i~~~s~ 161 (1449)
..+.++..+.|...+.++|-+++.+ .++|.|. -...+.++|++++.|-++++.. ..++|.+++.
T Consensus 8 ~~~~I~~~~~i~~~~~i~IG~~~~I---~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~--~g~~Ig~~~~ 82 (107)
T cd05825 8 DNSWIGEGVWIYNLAPVTIGSDACI---SQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVG--PGVTIGEGAV 82 (107)
T ss_pred CCCEECCCCEEeeCCceEECCCCEE---CCCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEEC--CCCEECCCCE
Confidence 4455555555555566777777766 3444432 1245677788777776665443 2334444444
No 41
>PLN02739 serine acetyltransferase
Probab=27.38 E-value=61 Score=39.42 Aligned_cols=56 Identities=25% Similarity=0.341 Sum_probs=31.5
Q ss_pred ceEEEeeeeEecCcEEEEecc------cEEEcCCceEEcccCCceEEEEEeeeEEeccCcEEEeceEEE
Q 000516 87 TTCLLNSNLYLNYDLYIYGTG------NLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVV 149 (1449)
Q Consensus 87 t~C~~~~~~~l~~d~~i~g~g------nl~I~~~v~l~c~~~Gc~i~v~~sG~~tl~~~s~ivagsv~l 149 (1449)
.+|+|-..+.|...+.|-|+| .-+|-++|.| .+|+. +.|+++|++++.|-+|+++.
T Consensus 230 ~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~I---GagA~----IlG~V~IGd~aiIGAGSVV~ 291 (355)
T PLN02739 230 ETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALL---GACVT----ILGNISIGAGAMVAAGSLVL 291 (355)
T ss_pred CCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEE---cCCCE----EeCCeEECCCCEECCCCEEC
Confidence 344444444444445554432 2455555555 44432 45777888777777777665
No 42
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=26.66 E-value=44 Score=44.38 Aligned_cols=25 Identities=12% Similarity=0.430 Sum_probs=14.2
Q ss_pred cccccccceEEEEEecCCCCCCCcc
Q 000516 947 RAEETQSHVHRMYFMGPNTFREPWH 971 (1449)
Q Consensus 947 r~eDL~~Hv~RmYf~G~NT~~~PW~ 971 (1449)
+-+.|-.--+-+|+.=|-..++=|-
T Consensus 409 rGd~l~~~~Ys~yv~dN~nL~qLwd 433 (1025)
T KOG4258|consen 409 RGDPLEEGNYSFYVLDNQNLQQLWD 433 (1025)
T ss_pred ccchhhcCceEEEEecCcCHHhcCC
Confidence 3455555566677766655555553
No 43
>PLN02694 serine O-acetyltransferase
Probab=26.00 E-value=73 Score=37.92 Aligned_cols=58 Identities=29% Similarity=0.397 Sum_probs=32.5
Q ss_pred ccceEEEeeeeEecCcEEEEec------ccEEEcCCceEEcccCCceEEEEEeeeEEeccCcEEEeceEEE
Q 000516 85 LNTTCLLNSNLYLNYDLYIYGT------GNLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVV 149 (1449)
Q Consensus 85 ~~t~C~~~~~~~l~~d~~i~g~------gnl~I~~~v~l~c~~~Gc~i~v~~sG~~tl~~~s~ivagsv~l 149 (1449)
.+.+|+|...+.|...+.+-|. ..-+|-++|.+ .++ ..+-|+++|+++++|-+++++.
T Consensus 183 IGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~I---Gag----A~Ilggi~IGd~a~IGAgSVV~ 246 (294)
T PLN02694 183 IGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLI---GAG----ATILGNVKIGEGAKIGAGSVVL 246 (294)
T ss_pred ECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEE---CCe----eEECCCCEECCCCEECCCCEEC
Confidence 4455666666666555555443 23455555555 334 2244667777777776666554
No 44
>PRK10502 putative acyl transferase; Provisional
Probab=25.76 E-value=1.5e+02 Score=32.34 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=17.5
Q ss_pred eeeEEeccCcEEEeceEEEEEeeEEecCCCeEe
Q 000516 131 SGNINMGQYAAIVAGSVVVSAANLTMDLNSSIN 163 (1449)
Q Consensus 131 sG~~tl~~~s~ivagsv~l~A~ni~i~~~s~In 163 (1449)
.+.++|++++.|-++++.. ..++|.++..|.
T Consensus 122 ~~~i~Igd~~~Ig~~a~I~--~Gv~Ig~~~vIg 152 (182)
T PRK10502 122 TAPIVIGEGCWLAADVFVA--PGVTIGSGAVVG 152 (182)
T ss_pred cCCEEEcCCcEEcCCCEEc--CCCEECCCCEEC
Confidence 3567777777776665443 334555555543
No 45
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=25.69 E-value=2.4e+02 Score=30.70 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=5.7
Q ss_pred EEeccCcEEEece
Q 000516 134 INMGQYAAIVAGS 146 (1449)
Q Consensus 134 ~tl~~~s~ivags 146 (1449)
+.|++++.|=+++
T Consensus 74 V~IG~~~~IG~ga 86 (147)
T cd04649 74 ISIGKRCLLGANS 86 (147)
T ss_pred EEECCCCEECCCC
Confidence 4444444444333
No 46
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=24.34 E-value=1.7e+02 Score=32.16 Aligned_cols=68 Identities=19% Similarity=0.320 Sum_probs=35.3
Q ss_pred EEeeeeEecCcEEEEecccEEEcCCceEEcccCCceEE--------------EEEeeeEEeccCcEEEeceEEEEEeeEE
Q 000516 90 LLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKIT--------------FNMSGNINMGQYAAIVAGSVVVSAANLT 155 (1449)
Q Consensus 90 ~~~~~~~l~~d~~i~g~gnl~I~~~v~l~c~~~Gc~i~--------------v~~sG~~tl~~~s~ivagsv~l~A~ni~ 155 (1449)
.|-..+.++.++.|...+.++|-+++.+ .++|.|. ....+.++|++++.|-++.+.. ..++
T Consensus 75 ~iG~~~~in~~~~i~d~~~I~IGd~v~I---~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~--~gv~ 149 (183)
T PRK10092 75 FLGNNFYANFDCVMLDVCPIRIGDNCML---APGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVIN--PGVT 149 (183)
T ss_pred EEcCCcEECCceEEecCceEEECCCCEE---CCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEEC--CCCE
Confidence 3333334444444444555666666655 4454443 2235677888877775554332 3345
Q ss_pred ecCCCeE
Q 000516 156 MDLNSSI 162 (1449)
Q Consensus 156 i~~~s~I 162 (1449)
|.+++.|
T Consensus 150 IG~~~vI 156 (183)
T PRK10092 150 IGDNVVV 156 (183)
T ss_pred ECCCCEE
Confidence 5555554
No 47
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=23.91 E-value=39 Score=34.93 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=24.1
Q ss_pred hhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhcCccccc
Q 000516 1004 WWEGSIHSILTVLAYPCAWSWKQWRRRNKIHRLQEYVKSEYDHSCLR 1050 (1449)
Q Consensus 1004 ~We~~l~~ILsvl~YPlaw~wlq~rRrkK~~rL~efv~seyd~~clr 1050 (1449)
+|-.++.+|+.++.+-+...+..+||||| .+ +--|.++|+-
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~rRR~r~--G~----~P~~gt~w~~ 41 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNRRRRRR--GL----QPIYGTRWMA 41 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHhhc--CC----CCcCCceecC
Confidence 46666666666666666666666666665 11 2235666665
No 48
>KOG2736 consensus Presenilin [Signal transduction mechanisms]
Probab=23.37 E-value=44 Score=40.76 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.1
Q ss_pred cccccccccCccccchhhhhhhhhh
Q 000516 1338 AGLNALFSKEPRRSSLTRIYALWNA 1362 (1449)
Q Consensus 1338 ag~nalfs~~~rr~~~~r~~~lwn~ 1362 (1449)
-|+-++|.+||+| |...|-.|+.
T Consensus 145 vGm~~ihwkgpl~--L~Q~YlI~~~ 167 (406)
T KOG2736|consen 145 VGMYSIHWKGPLR--LQQAYLIMIS 167 (406)
T ss_pred ceEEEEEeCCcee--ehhHHHHHHH
Confidence 4899999999999 8888988864
No 49
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=22.29 E-value=1.4e+02 Score=36.31 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=16.8
Q ss_pred cccCcEEEEeecccccccccc
Q 000516 1092 QKRFPMCIIFGGNGSYMSPYN 1112 (1449)
Q Consensus 1092 ~~~~Pm~Ilf~GdGSym~Pf~ 1112 (1449)
..--.|+|-.||||+|+--=+
T Consensus 103 i~waD~VisvGGDGTfL~Aas 123 (395)
T KOG4180|consen 103 IRWADMVISVGGDGTFLLAAS 123 (395)
T ss_pred CchhhEEEEecCccceeehhh
Confidence 344579999999999987666
No 50
>KOG1056 consensus Glutamate-gated metabotropic ion channel receptor subunit GRM2 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=21.69 E-value=1.1e+02 Score=41.28 Aligned_cols=35 Identities=29% Similarity=0.568 Sum_probs=27.7
Q ss_pred cccCCCCcc---------ccccccCCCCcccccCCCCCCCcccCCCCC
Q 000516 803 GKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLEL 841 (1449)
Q Consensus 803 g~~CP~G~~---------G~fC~eCP~GtYK~~sGs~~~~C~pCp~~~ 841 (1449)
..+|-+|.. -+-|++|+...|++ +..+|.+|+...
T Consensus 495 S~pC~~g~~k~~~~~~~ccw~c~~c~~~eY~~----d~~tc~~C~~~~ 538 (878)
T KOG1056|consen 495 SEPCLPGQRKKVTKGVTCCWHCTPCMSYEYVN----DEFTCSDCQLGQ 538 (878)
T ss_pred cCcCCcchhcccccCceeEEEcccCCCcceec----CcceeccCCcCc
Confidence 567777764 35699999999998 577999999644
No 51
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=21.65 E-value=5.2e+02 Score=25.35 Aligned_cols=14 Identities=36% Similarity=0.489 Sum_probs=9.0
Q ss_pred EEeeEEecCCCeEe
Q 000516 150 SAANLTMDLNSSIN 163 (1449)
Q Consensus 150 ~A~ni~i~~~s~In 163 (1449)
.+..+.|..++.|+
T Consensus 83 ~~~~l~v~~ga~i~ 96 (101)
T PF04519_consen 83 TAGKLEVEGGASIN 96 (101)
T ss_pred EECEEEEeCCCEEE
Confidence 45567777666665
No 52
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=21.07 E-value=92 Score=42.71 Aligned_cols=41 Identities=27% Similarity=0.631 Sum_probs=30.6
Q ss_pred ccCCCCccccccccCCCCcccccCCCCCCCcccCCCCCCCCccee
Q 000516 804 KKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANF 848 (1449)
Q Consensus 804 ~~CP~G~~G~fC~eCP~GtYK~~sGs~~~~C~pCp~~~~p~ra~~ 848 (1449)
..|.|+--|-+|-+|.+|||- +| .+=|++|.-+..-+-..|
T Consensus 784 CqCkPnVVGR~CdqCApGtyG--FG--PsGCk~CdC~~~Gs~~~~ 824 (1758)
T KOG0994|consen 784 CQCKPNVVGRRCDQCAPGTYG--FG--PSGCKACDCNSIGSLDKY 824 (1758)
T ss_pred ecccCccccccccccCCcccC--cC--CccCcccccccccccccc
Confidence 678888889999999999994 34 457999996554433333
Done!