Query 000516
Match_columns 1449
No_of_seqs 214 out of 217
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 15:55:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000516.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_291-294//hhsearch_pdb/000516hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fl7_A Ephrin receptor; ATP-bi 1.0 1 1 57.0 3.4 56 803-872 264-321 (536)
2 3me4_A Tumor necrosis factor r 1.0 1 1 39.8 3.8 69 798-871 41-119 (216)
3 1jma_B Herpesvirus entry media 1.0 1 1 38.3 4.2 66 802-872 15-90 (167)
4 4fhq_A Tumor necrosis factor r 1.0 1 1 36.8 4.0 65 803-872 18-92 (134)
5 2hey_R Tumor necrosis factor r 1.0 1 1 36.6 3.7 64 803-872 19-92 (146)
6 2uwi_A CRME protein; receptor, 1.0 1 1 36.2 4.0 65 801-871 15-89 (142)
7 3u3p_A Tumor necrosis factor r 1.0 1 1 35.7 3.8 65 801-871 24-98 (313)
8 1ext_A Tumor necrosis factor r 1.0 1 1 34.4 3.7 66 802-872 19-95 (162)
9 3qd6_R CD40L receptor, tumor n 1.0 1 1 33.1 4.6 64 803-871 18-91 (177)
10 3k51_B Decoy receptor 3; DCR3, 1.0 1 1 33.1 4.0 66 801-872 20-95 (176)
No 1
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=1.00 E-value=1 Score=57.00 Aligned_cols=56 Identities=29% Similarity=0.541 Sum_probs=43.9
Q ss_pred CCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 016999865--6532008999523667999987513999998986303785035646888873223686578
Q 000516 803 GKKCPKGLY--GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGRGVSQPFCPYECISEKYRM 872 (1449)
Q Consensus 803 g~~CP~G~~--G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~p~ra~~iy~rg~G~~~~~CpY~C~sdky~~ 872 (1449)
.+.|.+||. +..|+.||.|+||... ....|.+||.+..+. ......| .|..++++.
T Consensus 264 ~C~C~~G~e~~~~~C~aC~~g~~k~~~--~~~~C~~CP~~S~s~----------~~Gs~~C--~C~ng~~ra 321 (536)
T 3fl7_A 264 QCLCQAGYEKVEDACQACSPGFFKFEA--SESPCLECPEHTLPS----------PEGATSC--ECEEGFFRA 321 (536)
T ss_dssp CCEECTTEEEETTEEEECCTTEECCSC--CSSCCEECCSSEECC----------CTTCSSC--EECTTCBCC
T ss_pred CEECCCCCCCCCCEEEECCCCCCCCCC--CCCCCCCCCCCCCCC----------CCCCCEE--EEECCCCCC
T ss_conf 276667644699655425899876667--898500688877788----------8884078--874342236
No 2
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=1.00 E-value=1 Score=39.82 Aligned_cols=69 Identities=17% Similarity=0.300 Sum_probs=43.5
Q ss_pred CCEEECCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC-CCCCCCCCCC
Q ss_conf 95399016999865---------6532008999523667999987513999998986303785035646-8888732236
Q 000516 798 VGTVTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGRGVS-QPFCPYECIS 867 (1449)
Q Consensus 798 ~GTi~g~~CP~G~~---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~p~ra~~iy~rg~G~~-~~~CpY~C~s 867 (1449)
.+..-=+.||+|+| ...|++||.|+|..... ....|.+|+. ......+..++.+..+ .+.| +|.+
T Consensus 41 ~~~~CC~~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n-~~~~C~~C~~--C~~~~~~~~~~~Ct~t~dtvC--~C~~ 115 (216)
T 3me4_A 41 HLGRCCSRCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWN-EEDKCLLHKV--CDAGKALVAVDPGNHTAPRRC--ACTA 115 (216)
T ss_dssp ETTEEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSSB-CCSSCEECCC--CCGGGTEEEESTTCSSSCCEE--EECT
T ss_pred CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCC-CCCCCCCCCC--CCCCCCEEEEECCCCCCCCCC--CCCC
T ss_conf 6788868999895563568999998203289997625789-8876978888--788757688724778888502--5879
Q ss_pred CCCC
Q ss_conf 8657
Q 000516 868 EKYR 871 (1449)
Q Consensus 868 dky~ 871 (1449)
|+|.
T Consensus 116 G~y~ 119 (216)
T 3me4_A 116 GYHW 119 (216)
T ss_dssp TEEE
T ss_pred CEEC
T ss_conf 9470
No 3
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=1.00 E-value=1 Score=38.28 Aligned_cols=66 Identities=24% Similarity=0.491 Sum_probs=39.1
Q ss_pred ECCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 9016999865---------6532008999523667999987513999998986-30378503564688887322368657
Q 000516 802 TGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRR-ANFIYVRGRGVSQPFCPYECISEKYR 871 (1449)
Q Consensus 802 ~g~~CP~G~~---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~p~r-a~~iy~rg~G~~~~~CpY~C~sdky~ 871 (1449)
.=..||+|+| ...|++||.|+|....+ ....|.+|+. .+.. ..++-..-.....+.| .|.+|+|.
T Consensus 15 ~C~~CppG~~~~~~C~~~~~t~C~~Cp~GtY~~~~n-~~~~C~~C~~--C~~~~g~~~~~~Ct~t~~t~C--~C~~G~y~ 89 (167)
T 1jma_B 15 CCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLN-GLSKCLQCQM--CDPAMGLRASRNCSRTENAVC--GCSPGHFC 89 (167)
T ss_dssp CCBCBCTTEEEEECCCSSSCCEEEECCTTEECSSCB-CSSCCEECCC--CCTTTTEEEEECCCSSSCCEE--EECTTEEE
T ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC--CCCCCCEEEECCCCCCCCCCC--CCCCCCEE
T ss_conf 888889998765678999998577298995136667-6763648744--566788688556788888700--38999652
Q ss_pred C
Q ss_conf 8
Q 000516 872 M 872 (1449)
Q Consensus 872 ~ 872 (1449)
.
T Consensus 90 ~ 90 (167)
T 1jma_B 90 I 90 (167)
T ss_dssp E
T ss_pred C
T ss_conf 6
No 4
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Probab=1.00 E-value=1 Score=36.85 Aligned_cols=65 Identities=26% Similarity=0.563 Sum_probs=41.1
Q ss_pred CCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC-CCCCCCCCCCCCCCC
Q ss_conf 016999865---------6532008999523667999987513999998986303785035646-888873223686578
Q 000516 803 GKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGRGVS-QPFCPYECISEKYRM 872 (1449)
Q Consensus 803 g~~CP~G~~---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~p~ra~~iy~rg~G~~-~~~CpY~C~sdky~~ 872 (1449)
=+.||+|++ ...|++||.|+|..... ....|.+|.. .......+.++.+..+ .+.| .|.+|+|..
T Consensus 18 C~~CppG~~~~~~C~~~~~t~C~pC~~gtys~~~n-~~~~C~~C~~--C~~~~g~~~~~~CT~t~dtvC--~C~~G~~c~ 92 (134)
T 4fhq_A 18 CPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLN-GLSKCLQCQM--CDPAMGLRASRNCSRTENAVC--GCSPGHFCI 92 (134)
T ss_dssp EECBCTTEEEEECCC--CCCEEEECCTTEECCSCB-CCSSCEECCC--CCGGGTEEEEECCCSSSCCEE--EECTTEEEE
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCC-CCCCCCCCCC--CCCCCCEEEECCCCCCCCCCC--CCCCCCEEC
T ss_conf 87999797754237999998133899987744788-8883867798--885679678605778789563--699998866
No 5
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=1.00 E-value=1 Score=36.57 Aligned_cols=64 Identities=22% Similarity=0.477 Sum_probs=40.0
Q ss_pred CCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC-CCCCCCCCCCCCCCC
Q ss_conf 016999865---------6532008999523667999987513999998986303785035646-888873223686578
Q 000516 803 GKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGRGVS-QPFCPYECISEKYRM 872 (1449)
Q Consensus 803 g~~CP~G~~---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~p~ra~~iy~rg~G~~-~~~CpY~C~sdky~~ 872 (1449)
=+.||+|.| ...|++||.|+|....+ ...|.+|+. ..........+.+..+ .+.| +|.+|+|..
T Consensus 19 C~~C~pG~~~~~~Ct~~~~t~C~~C~~gty~~~~~--~~~C~~C~~--C~~~~g~~~~~~Ct~t~dt~C--~C~~G~y~~ 92 (146)
T 2hey_R 19 CHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVS--SKPCKPCTW--CNLRSGSERKQLCTATQDTVC--RCRAGTQPL 92 (146)
T ss_dssp EECBCTTEEEEECCCSSCCCEEEECCTTEECCSCB--SSCCEECCC--CCGGGTEEEEECCBTTBCCEE--EECTTEEES
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCC--CCCCCCCCC--CCCCCCCEEECCCCCCCCCCC--CCCCCEEEC
T ss_conf 98989897040557899898755499988878888--874866687--887778367616766778644--477870607
No 6
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=1.00 E-value=1 Score=36.23 Aligned_cols=65 Identities=26% Similarity=0.533 Sum_probs=42.0
Q ss_pred EECCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC-CCCCCCCCCCCCCC
Q ss_conf 99016999865---------653200899952366799998751399999898630378503564-68888732236865
Q 000516 801 VTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGRGV-SQPFCPYECISEKY 870 (1449)
Q Consensus 801 i~g~~CP~G~~---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~p~ra~~iy~rg~G~-~~~~CpY~C~sdky 870 (1449)
.-=+.||+|++ ...|++||.|+|..... ....|.+|..-. + ...+-++.+.. +.+.| .|.+|+|
T Consensus 15 ~cC~~CppG~~~~~~C~~~~~t~C~pC~~gty~~~~n-~~~~C~~C~~C~-~--~~~~~~~~Ct~t~dtvC--~C~~G~y 88 (142)
T 2uwi_A 15 KCCKLCKPGTYSDHRCDKYSDTICGHCPSDTFTSIYN-RSPWCHSCRGPC-G--TNRVEVTPCTPTTNRIC--HCDSNSY 88 (142)
T ss_dssp EEEECBCTTEEEEECCCSSCCCEEEECCTTEECCSSB-CCSSCEECCCCC-C--TTEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC-C--CCEEEEECCCCCCCCEE--ECCCCCE
T ss_conf 8887898897467668899897567589997745689-898467876705-6--88567615989879981--1899968
Q ss_pred C
Q ss_conf 7
Q 000516 871 R 871 (1449)
Q Consensus 871 ~ 871 (1449)
.
T Consensus 89 c 89 (142)
T 2uwi_A 89 C 89 (142)
T ss_dssp E
T ss_pred E
T ss_conf 5
No 7
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=1.00 E-value=1 Score=35.75 Aligned_cols=65 Identities=29% Similarity=0.607 Sum_probs=35.0
Q ss_pred EECCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC-CCCCCCCCCCCCC
Q ss_conf 99016999865---------6532008999523667999987513999998986303785035646-8888732236865
Q 000516 801 VTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGRGVS-QPFCPYECISEKY 870 (1449)
Q Consensus 801 i~g~~CP~G~~---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~p~ra~~iy~rg~G~~-~~~CpY~C~sdky 870 (1449)
+-=..||+|.| ...|++||.|+|+.... ....|.+|.. .... .+..++.+..+ .+.| .|.+|+|
T Consensus 24 ~CC~~CpPGtyv~~~Ct~~~dt~C~pCp~GtYt~~~N-~~~~C~~C~~-~C~~--g~~~~~~CT~TsDtvC--~C~~G~y 97 (313)
T 3u3p_A 24 LTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHEN-GIEKCHDCSQ-PCPW--PMIEKLPCAALTDREC--TCPPGMF 97 (313)
T ss_dssp EEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSCB-CCSSCEECCC-CCCT--TCEEEECSBTTBCCEE--ECCTTEE
T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCC-CCCCCCCCCC-CCCC--CCEEECCCCCCCCCCC--CCCCCCE
T ss_conf 8888979993266767899997431699985602688-7880814466-0478--8778357868888201--4788703
Q ss_pred C
Q ss_conf 7
Q 000516 871 R 871 (1449)
Q Consensus 871 ~ 871 (1449)
.
T Consensus 98 ~ 98 (313)
T 3u3p_A 98 Q 98 (313)
T ss_dssp E
T ss_pred E
T ss_conf 6
No 8
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Probab=1.00 E-value=1 Score=34.37 Aligned_cols=66 Identities=27% Similarity=0.581 Sum_probs=38.6
Q ss_pred ECCCCCCCCC----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC-CCCCCCCCCCCCCCC
Q ss_conf 9016999865----------65320089995236679999875139999989863037850356-468888732236865
Q 000516 802 TGKKCPKGLY----------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGRG-VSQPFCPYECISEKY 870 (1449)
Q Consensus 802 ~g~~CP~G~~----------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~p~ra~~iy~rg~G-~~~~~CpY~C~sdky 870 (1449)
-=+.||+|+| ...|++||.|+|....+. ...|.+|.. -.......-.+.+. .+.+.| .|.+|+|
T Consensus 19 CC~~CppG~~~~~~Ct~~~~~t~C~~C~~gty~~~~n~-~~~C~~C~~--C~~~~~~~~~~~Ct~t~dt~C--~C~~G~y 93 (162)
T 1ext_A 19 CCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENH-LRHCLSCSK--CRKEMGQVEISSCTVDRDTVC--GCRKNQY 93 (162)
T ss_dssp EEECBCTTEEEEECCSSTTSCCEEEECCTTEECCSSBC-CSSCEECCC--CCGGGTCEEEECCBTTBCCEE--ECCTTEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC--CCCCCCEEEEECCCCCCCCCC--CCCCCCE
T ss_conf 99889998604566678888961333989865146677-775524378--877789788713668888786--5989852
Q ss_pred CC
Q ss_conf 78
Q 000516 871 RM 872 (1449)
Q Consensus 871 ~~ 872 (1449)
..
T Consensus 94 ~~ 95 (162)
T 1ext_A 94 RH 95 (162)
T ss_dssp EE
T ss_pred EC
T ss_conf 43
No 9
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=33.12 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=37.3
Q ss_pred CCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC-CCCCCCCCCCCCCC
Q ss_conf 016999865---------6532008999523667999987513999998986303785035646-88887322368657
Q 000516 803 GKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGRGVS-QPFCPYECISEKYR 871 (1449)
Q Consensus 803 g~~CP~G~~---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~p~ra~~iy~rg~G~~-~~~CpY~C~sdky~ 871 (1449)
=..||+|.| ...|++||.|+|+.... ....|.+|.. ......+...+.+..+ .+.| .|.+|+|.
T Consensus 18 C~~CppG~~~~~~C~~~~~t~C~pC~~gty~~~~n-~~~~C~~C~~--C~~~~g~~~~~~Ct~t~d~~C--~C~~G~~~ 91 (177)
T 3qd6_R 18 CSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWN-RETHCHQHKY--CDPNLGLRVQQKGTSETDTIC--TCEEGWHC 91 (177)
T ss_dssp ECCBCTTBCCCBCCCSSCCCBCCBCCSSEECCSSB-CCSSCEECCC--CCGGGTEEEEECCCTTSCCEE--EECTTEEE
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCC-CCCCCCCCCC--CCCCCCEEEECCCCCCCCCEE--ECCCCCEE
T ss_conf 89889797763678999998112288996354789-8886878776--888678188457747788444--44799477
No 10
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D
Probab=1.00 E-value=1 Score=33.10 Aligned_cols=66 Identities=20% Similarity=0.419 Sum_probs=39.5
Q ss_pred EECCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC-CCCCCCCCCCCCC
Q ss_conf 99016999865---------6532008999523667999987513999998986303785035646-8888732236865
Q 000516 801 VTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGRGVS-QPFCPYECISEKY 870 (1449)
Q Consensus 801 i~g~~CP~G~~---------G~fC~eCP~GtYK~~tGs~~~~C~pCp~~~~p~ra~~iy~rg~G~~-~~~CpY~C~sdky 870 (1449)
+-=+.||+|+| ...|++||.|+|+.... ....|.+|... ... ....++.+..+ .+.| .|.+|+|
T Consensus 20 ~cC~~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n-~~~~C~~C~~~-C~~--~~~~~~~Ct~tsdtvC--~C~~G~~ 93 (176)
T 3k51_B 20 LVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWN-YLERCRYCNVL-CGE--REEEARACHATHNRAC--RCRTGFF 93 (176)
T ss_dssp EEEECBCTTEEEEECCCSSSCCEEEECCTTEECCSCB-CCSSCEECCCC-CCS--SEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCC-CCCCCCCCCCC-CCC--CCEEECCCCCCCCCEE--ECCCCEE
T ss_conf 7897979893467668999998402089987656789-89827354576-799--9788436768778600--1568866
Q ss_pred CC
Q ss_conf 78
Q 000516 871 RM 872 (1449)
Q Consensus 871 ~~ 872 (1449)
..
T Consensus 94 ~~ 95 (176)
T 3k51_B 94 AH 95 (176)
T ss_dssp EE
T ss_pred EC
T ss_conf 77
Done!