BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000517
(1449 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 100/217 (46%), Gaps = 29/217 (13%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARV 935
+L DV G + ++G +G+GKTTL+ +LAG + GEI + G P +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA---GEIFLDGSPADPFLLRKN 82
Query: 936 SGYCEQT-DIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVG 994
GY Q TVEE V FS EI ++E + + +EL VG
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFSL------EIMGLDESEMRKRIKKVLEL-------VG 129
Query: 995 IPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT 1049
+ G+ LS Q++RL IA L + + +DEP + LD + + + ++++ N
Sbjct: 130 LSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNE 189
Query: 1050 GRTIVCTIHQPSIDIFEAFDEL--ILLKTGGRIIYCG 1084
G+ I+ H+ E D++ IL + G I +CG
Sbjct: 190 GKGIILVTHE-----LEYLDDMDFILHISNGTIDFCG 221
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 110/255 (43%), Gaps = 48/255 (18%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+L V+ + G++ +++G G GK+T LK L+G L GE+ +G + F+ K
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG----LLAAAGEIFLDGSPADPFLLRK 81
Query: 246 TSAYISQN-DLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYM 304
Y+ QN I TV E V FS G+ +E+ M
Sbjct: 82 NVGYVFQNPSSQIIGATVEEDVAFSLEIMGL---DESEMR-------------------- 118
Query: 305 KAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKAL 364
K +K+ L+ ++ + GL AD + +SGGQK+RL M+ T+ L
Sbjct: 119 -----KRIKKVLE---LVGLSGL-AAADPL-------NLSGGQKQRLAIASMLARDTRFL 162
Query: 365 FMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVY 424
+DE + LD + +I ++ L + I L+ E D D I+ ++ G I +
Sbjct: 163 ALDEPVSMLDPPSQREIFQVLESL---KNEGKGIILVTHELEYLDDMDFILHISNGTIDF 219
Query: 425 HGP-QDHVLAFFEDC 438
G ++ V F+D
Sbjct: 220 CGSWEEFVEREFDDV 234
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 125/253 (49%), Gaps = 31/253 (12%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKT--SGYV-EGEIKISGYPKVQETFARV 935
D+ + G +G SG GK+TL+ ++AG +T SG + GE +++ P + R
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RG 76
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAPE--INSKTKAEFVNEVLETIELDAIKDSLV 993
G Q+ P+++V E++ F L A + IN + VN+V E ++L + D
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR-----VNQVAEVLQLAHLLDR-- 129
Query: 994 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT--GR 1051
LS QR+R+ I LVA PS+ +DEP + LDA A + MR + ++ GR
Sbjct: 130 ---KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGR 185
Query: 1052 TIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG-PLGKHSSQVIEYFEGISGVPKIRNNY 1110
T++ H ++ D++++L GR+ G PL + + G G PK+ N+
Sbjct: 186 TMIYVTHD-QVEAMTLADKIVVLDA-GRVAQVGKPLELYHYPADRFVAGFIGSPKM--NF 241
Query: 1111 NPATWVIEVTSTS 1123
P ++VT+T+
Sbjct: 242 LP----VKVTATA 250
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 99/249 (39%), Gaps = 54/249 (21%)
Query: 197 GRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP--KTSAYISQND 254
G + +GP GCGKST L+ ++G L+ +T + G K PP + + Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAG-LE---TITSGDLFIGEKRMNDTPPAERGVGMVFQSY 84
Query: 255 LHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKR 314
++V E + F + G+++E + + V V
Sbjct: 85 ALYPHLSVAENMSFGLKL--AGAKKEVINQ-----------------------RVNQVAE 119
Query: 315 TLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLD 374
LQ ++L + + +SGGQ++R+ G +V +DE + LD
Sbjct: 120 VLQLAHLL--------------DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Query: 375 SSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKI--------VYHG 426
++ Q+ I +L H +I + E L D I+++ G++ +YH
Sbjct: 166 AALRVQMRIEISRL-HKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224
Query: 427 PQDHVLAFF 435
P D +A F
Sbjct: 225 PADRFVAGF 233
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 125/253 (49%), Gaps = 31/253 (12%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKT--SGYV-EGEIKISGYPKVQETFARV 935
D+ + G +G SG GK+TL+ ++AG +T SG + GE +++ P + R
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RG 76
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAPE--INSKTKAEFVNEVLETIELDAIKDSLV 993
G Q+ P+++V E++ F L A + IN + VN+V E ++L + D
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR-----VNQVAEVLQLAHLLDR-- 129
Query: 994 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT--GR 1051
LS QR+R+ I LVA PS+ +DEP + LDA A + MR + ++ GR
Sbjct: 130 ---KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGR 185
Query: 1052 TIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG-PLGKHSSQVIEYFEGISGVPKIRNNY 1110
T++ H ++ D++++L GR+ G PL + + G G PK+ N+
Sbjct: 186 TMIYVTHD-QVEAMTLADKIVVLDA-GRVAQVGKPLELYHYPADRFVAGFIGSPKM--NF 241
Query: 1111 NPATWVIEVTSTS 1123
P ++VT+T+
Sbjct: 242 LP----VKVTATA 250
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 99/249 (39%), Gaps = 54/249 (21%)
Query: 197 GRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP--KTSAYISQND 254
G + +GP GCGKST L+ ++G L+ +T + G K PP + + Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAG-LE---TITSGDLFIGEKRMNDTPPAERGVGMVFQSY 84
Query: 255 LHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKR 314
++V E + F + G+++E + + V V
Sbjct: 85 ALYPHLSVAENMSFGLKL--AGAKKEVINQ-----------------------RVNQVAE 119
Query: 315 TLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLD 374
LQ ++L + + +SGGQ++R+ G +V +DE + LD
Sbjct: 120 VLQLAHLL--------------DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Query: 375 SSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKI--------VYHG 426
++ Q+ I +L H +I + E L D I+++ G++ +YH
Sbjct: 166 AALRVQMRIEISRL-HKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224
Query: 427 PQDHVLAFF 435
P D +A F
Sbjct: 225 PADRFVAGF 233
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 125/253 (49%), Gaps = 31/253 (12%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKT--SGYV-EGEIKISGYPKVQETFARV 935
D+ + G +G SG GK+TL+ ++AG +T SG + GE +++ P + R
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RG 76
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAPE--INSKTKAEFVNEVLETIELDAIKDSLV 993
G Q+ P+++V E++ F L A + IN + VN+V E ++L + D
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR-----VNQVAEVLQLAHLLDR-- 129
Query: 994 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT--GR 1051
LS QR+R+ I LVA PS+ +D+P + LDA A + MR + ++ GR
Sbjct: 130 ---KPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGR 185
Query: 1052 TIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG-PLGKHSSQVIEYFEGISGVPKIRNNY 1110
T++ H ++ D++++L GR+ G PL + + G G PK+ N+
Sbjct: 186 TMIYVTHD-QVEAMTLADKIVVLDA-GRVAQVGKPLELYHYPADRFVAGFIGSPKM--NF 241
Query: 1111 NPATWVIEVTSTS 1123
P ++VT+T+
Sbjct: 242 LP----VKVTATA 250
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 99/249 (39%), Gaps = 54/249 (21%)
Query: 197 GRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP--KTSAYISQND 254
G + +GP GCGKST L+ ++G L+ +T + G K PP + + Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAG-LE---TITSGDLFIGEKRMNDTPPAERGVGMVFQSY 84
Query: 255 LHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKR 314
++V E + F + G+++E + + V V
Sbjct: 85 ALYPHLSVAENMSFGLKL--AGAKKEVINQ-----------------------RVNQVAE 119
Query: 315 TLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLD 374
LQ ++L + + +SGGQ++R+ G +V +D+ + LD
Sbjct: 120 VLQLAHLL--------------DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLD 165
Query: 375 SSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKI--------VYHG 426
++ Q+ I +L H +I + E L D I+++ G++ +YH
Sbjct: 166 AALRVQMRIEISRL-HKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224
Query: 427 PQDHVLAFF 435
P D +A F
Sbjct: 225 PADRFVAGF 233
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 108/219 (49%), Gaps = 40/219 (18%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYV--EGEIKISGY------PK 927
+L ++ S++ G + ++G SG+GK+TL ++ Y+ G++ I G+ P
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 75
Query: 928 ---------VQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNE 978
+Q+ + + +P ++VE+ VI++A L A +F++E
Sbjct: 76 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGA--------HDFISE 126
Query: 979 VLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 1038
+ E +++VG G GLS QR+R+ IA LV NP I+ DE T+ LD + +
Sbjct: 127 LREGY------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 179
Query: 1039 VMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
+MR + I GRT++ H+ S + D +I+++ G
Sbjct: 180 IMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 104/248 (41%), Gaps = 39/248 (15%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
IL++++ +K G + ++G G GKST K + ++P
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ--------------------RFYIPEN 59
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
I +DL +A+ ++ R GV ++ ++ S + + P ++ +
Sbjct: 60 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 113
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALF 365
A + G D+I + L +T+VG G+SGGQ++R+ +V K L
Sbjct: 114 AAKLAGAH-----DFISE---LREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILI 164
Query: 366 MDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYH 425
DE T+ LD + + I+ + ++ + ++ T D II+M +GKIV
Sbjct: 165 FDEATSALDYESEHVIMRNMHKIC----KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ 220
Query: 426 GPQDHVLA 433
G +L+
Sbjct: 221 GKHKELLS 228
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 108/219 (49%), Gaps = 40/219 (18%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYV--EGEIKISGY------PK 927
+L ++ S++ G + ++G SG+GK+TL ++ Y+ G++ I G+ P
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 73
Query: 928 ---------VQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNE 978
+Q+ + + +P ++VE+ VI++A L A +F++E
Sbjct: 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGA--------HDFISE 124
Query: 979 VLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 1038
+ E +++VG G GLS QR+R+ IA LV NP I+ DE T+ LD + +
Sbjct: 125 LREGY------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 177
Query: 1039 VMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
+MR + I GRT++ H+ S + D +I+++ G
Sbjct: 178 IMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEKG 213
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 104/248 (41%), Gaps = 39/248 (15%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
IL++++ +K G + ++G G GKST K + ++P
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ--------------------RFYIPEN 57
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
I +DL +A+ ++ R GV ++ ++ S + + P ++ +
Sbjct: 58 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 111
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALF 365
A + G D+I + L +T+VG G+SGGQ++R+ +V K L
Sbjct: 112 AAKLAGAH-----DFISE---LREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILI 162
Query: 366 MDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYH 425
DE T+ LD + + I+ + ++ + ++ T D II+M +GKIV
Sbjct: 163 FDEATSALDYESEHVIMRNMHKIC----KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ 218
Query: 426 GPQDHVLA 433
G +L+
Sbjct: 219 GKHKELLS 226
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 108/219 (49%), Gaps = 40/219 (18%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYV--EGEIKISGY------PK 927
+L ++ S++ G + ++G SG+GK+TL ++ Y+ G++ I G+ P
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 79
Query: 928 ---------VQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNE 978
+Q+ + + +P ++VE+ VI++A L A +F++E
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGA--------HDFISE 130
Query: 979 VLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 1038
+ E +++VG G GLS QR+R+ IA LV NP I+ DE T+ LD + +
Sbjct: 131 LREGY------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 1039 VMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
+MR + I GRT++ H+ S + D +I+++ G
Sbjct: 184 IMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 104/248 (41%), Gaps = 39/248 (15%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
IL++++ +K G + ++G G GKST K + ++P
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ--------------------RFYIPEN 63
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
I +DL +A+ ++ R GV ++ ++ S + + P ++ +
Sbjct: 64 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 117
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALF 365
A + G D+I + L +T+VG G+SGGQ++R+ +V K L
Sbjct: 118 AAKLAGAH-----DFISE---LREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILI 168
Query: 366 MDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYH 425
DE T+ LD + + I+ + ++ + ++ T D II+M +GKIV
Sbjct: 169 FDEATSALDYESEHVIMRNMHKIC----KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ 224
Query: 426 GPQDHVLA 433
G +L+
Sbjct: 225 GKHKELLS 232
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 102/222 (45%), Gaps = 17/222 (7%)
Query: 869 FADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG----YVEGEIKISG 924
F K+ L +V ++ G ++G SGAGKTT M ++AG Y + + S
Sbjct: 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72
Query: 925 YPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSK-TKAEFVNEVLETI 983
+ R G QT PN+T E++ F P N K +K E V E
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF-------PLTNMKMSKEEIRKRVEEVA 125
Query: 984 ELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAV 1043
++ I L P LS Q++R+ +A LV +PS++ +DEP + LDAR V
Sbjct: 126 KILDIHHVLNHFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183
Query: 1044 KNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
K + + G T++ H P+ DIF D + +L G+++ G
Sbjct: 184 KEVQSRLGVTLLVVSHDPA-DIFAIADRVGVL-VKGKLVQVG 223
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 109/259 (42%), Gaps = 56/259 (21%)
Query: 181 EAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGE-------VSY 233
+ K+ L++V+ ++ G +LGP G GK+TF++ ++G PS TGE V+
Sbjct: 15 KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVAS 71
Query: 234 NGYKLEEFVPPKTS--AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKE 291
NG KL VPP+ + Q +T E + F T M++S+ E
Sbjct: 72 NG-KL--IVPPEDRKIGMVFQTWALYPNLTAFENIAFPL----------TNMKMSKEEIR 118
Query: 292 AGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRL 351
V+ V + L ++L N R +SG Q++R+
Sbjct: 119 K---------------RVEEVAKILDIHHVL--------------NHFPRELSGAQQQRV 149
Query: 352 TTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLF 411
+V L +DE + LD+ A ++++ T L+ PA + F +
Sbjct: 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIA 208
Query: 412 DDIILMAEGKIVYHG-PQD 429
D + ++ +GK+V G P+D
Sbjct: 209 DRVGVLVKGKLVQVGKPED 227
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 102/222 (45%), Gaps = 17/222 (7%)
Query: 869 FADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG----YVEGEIKISG 924
F K+ L +V ++ G ++G SGAGKTT M ++AG Y + + S
Sbjct: 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72
Query: 925 YPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSK-TKAEFVNEVLETI 983
+ R G QT PN+T E++ F P N K +K E V E
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF-------PLTNMKMSKEEIRKRVEEVA 125
Query: 984 ELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAV 1043
++ I L P LS Q++R+ +A LV +PS++ +DEP + LDAR V
Sbjct: 126 KILDIHHVLNHFP--RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183
Query: 1044 KNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
K + + G T++ H P+ DIF D + +L G+++ G
Sbjct: 184 KEVQSRLGVTLLVVSHDPA-DIFAIADRVGVL-VKGKLVQVG 223
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 110/259 (42%), Gaps = 56/259 (21%)
Query: 181 EAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGE-------VSY 233
+ K+ L++V+ ++ G +LGP G GK+TF++ ++G PS TGE V+
Sbjct: 15 KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVAS 71
Query: 234 NGYKLEEFVPPKTS--AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKE 291
NG KL VPP+ + Q +T E + F T M++S+ E
Sbjct: 72 NG-KL--IVPPEDRKIGMVFQTWALYPNLTAFENIAFPL----------TNMKMSKEEIR 118
Query: 292 AGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRL 351
V+ V + L ++L N R +SGGQ++R+
Sbjct: 119 K---------------RVEEVAKILDIHHVL--------------NHFPRELSGGQQQRV 149
Query: 352 TTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLF 411
+V L +DE + LD+ A ++++ T L+ PA + F +
Sbjct: 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIA 208
Query: 412 DDIILMAEGKIVYHG-PQD 429
D + ++ +GK+V G P+D
Sbjct: 209 DRVGVLVKGKLVQVGKPED 227
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 108/219 (49%), Gaps = 40/219 (18%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYV--EGEIKISGY------PK 927
+L ++ S++ G + ++G +G+GK+TL ++ Y+ G++ I G+ P
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 75
Query: 928 ---------VQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNE 978
+Q+ + + +P ++VE+ VI++A L A +F++E
Sbjct: 76 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGA--------HDFISE 126
Query: 979 VLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 1038
+ E +++VG G GLS QR+R+ IA LV NP I+ DE T+ LD + +
Sbjct: 127 LREGY------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 179
Query: 1039 VMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
+MR + I GRT++ H+ S + D +I+++ G
Sbjct: 180 IMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 104/248 (41%), Gaps = 39/248 (15%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
IL++++ +K G + ++G G GKST K + ++P
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQ--------------------RFYIPEN 59
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
I +DL +A+ ++ R GV ++ ++ S + + P ++ +
Sbjct: 60 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 113
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALF 365
A + G D+I + L +T+VG G+SGGQ++R+ +V K L
Sbjct: 114 AAKLAGAH-----DFISE---LREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILI 164
Query: 366 MDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYH 425
DE T+ LD + + I+ + ++ + ++ T D II+M +GKIV
Sbjct: 165 FDEATSALDYESEHVIMRNMHKIC----KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ 220
Query: 426 GPQDHVLA 433
G +L+
Sbjct: 221 GKHKELLS 228
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 108/219 (49%), Gaps = 40/219 (18%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYV--EGEIKISGY------PK 927
+L ++ S++ G + ++G SG+GK+TL ++ Y+ G++ I G+ P
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 79
Query: 928 ---------VQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNE 978
+Q+ + + +P ++VE+ VI++A L A +F++E
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGA--------HDFISE 130
Query: 979 VLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 1038
+ E +++VG G GLS QR+R+ IA LV NP I+ D+ T+ LD + +
Sbjct: 131 LREGY------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHV 183
Query: 1039 VMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
+MR + I GRT++ H+ S + D +I+++ G
Sbjct: 184 IMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 104/248 (41%), Gaps = 39/248 (15%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
IL++++ +K G + ++G G GKST K + ++P
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ--------------------RFYIPEN 63
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
I +DL +A+ ++ R GV ++ ++ S + + P ++ +
Sbjct: 64 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 117
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALF 365
A + G D+I + L +T+VG G+SGGQ++R+ +V K L
Sbjct: 118 AAKLAGAH-----DFISE---LREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILI 168
Query: 366 MDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYH 425
D+ T+ LD + + I+ + ++ + ++ T D II+M +GKIV
Sbjct: 169 FDQATSALDYESEHVIMRNMHKIC----KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ 224
Query: 426 GPQDHVLA 433
G +L+
Sbjct: 225 GKHKELLS 232
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 99/217 (45%), Gaps = 18/217 (8%)
Query: 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP-KVQET- 931
L +L + +R G + ++G SG+GK+T + L + EGEI I G K ++T
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCL--NLLEDFDEGEIIIDGINLKAKDTN 94
Query: 932 FARVS---GYCEQTDIHSPNITVEESVIFSAW-LRLAPEINSKTKAEFVNEVLETIELDA 987
+V G Q P++TV ++ + +R P ++ KA +E ++
Sbjct: 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA------MELLDKVG 148
Query: 988 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV 1047
+KD P + LS Q +R+ IA L P I+ DEPT+ LD V+ +K +
Sbjct: 149 LKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 206
Query: 1048 NTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
N G T+V H+ + + +L GG II G
Sbjct: 207 NEGMTMVVVTHE--MGFAREVGDRVLFMDGGYIIEEG 241
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 343 ISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQ 402
+SGGQ +R+ + K + DE T+ LD ++++ ++QL + + ++ +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN--EGMTMVVVTH 217
Query: 403 PAPETFDLFDDIILMAEGKIVYHG-PQD 429
++ D ++ M G I+ G P+D
Sbjct: 218 EMGFAREVGDRVLFMDGGYIIEEGKPED 245
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 167 MISVLPKLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALS 218
MI V + SLE +L ++ ++ G + +++GP G GKSTFL+ L+
Sbjct: 24 MIDVHQLKKSFGSLE----VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN 71
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 99/217 (45%), Gaps = 18/217 (8%)
Query: 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP-KVQET- 931
L +L + +R G + ++G SG+GK+T + L + EGEI I G K ++T
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCL--NLLEDFDEGEIIIDGINLKAKDTN 73
Query: 932 FARVS---GYCEQTDIHSPNITVEESVIFSAW-LRLAPEINSKTKAEFVNEVLETIELDA 987
+V G Q P++TV ++ + +R P ++ KA +E ++
Sbjct: 74 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA------MELLDKVG 127
Query: 988 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV 1047
+KD P + LS Q +R+ IA L P I+ DEPT+ LD V+ +K +
Sbjct: 128 LKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 185
Query: 1048 NTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
N G T+V H+ + + +L GG II G
Sbjct: 186 NEGMTMVVVTHE--MGFAREVGDRVLFMDGGYIIEEG 220
Score = 34.7 bits (78), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 343 ISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQ 402
+SGGQ +R+ + K + DE T+ LD ++++ ++QL + + ++ +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN--EGMTMVVVTH 196
Query: 403 PAPETFDLFDDIILMAEGKIVYHG-PQD 429
++ D ++ M G I+ G P+D
Sbjct: 197 EMGFAREVGDRVLFMDGGYIIEEGKPED 224
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 167 MISVLPKLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALS 218
MI V + SLE +L ++ ++ G + +++GP G GKSTFL+ L+
Sbjct: 3 MIDVHQLKKSFGSLE----VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN 50
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 149/342 (43%), Gaps = 43/342 (12%)
Query: 763 GFIFWISLGAL-------FGIALLLNIG--------FTLALTFLKSS--GSSRVMISHEK 805
G IS GA+ F +A + +G F LT S GS + ++ +
Sbjct: 316 GLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQ 375
Query: 806 LAKMQESEDSSYGEPVKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMR 865
LA + ++ ++ G + E P+ + S GR +D+K D +E
Sbjct: 376 LAVLGTAQGAASG--IYEVLDRKPVIDSSSKAGR------------KDMKIKGDITVENV 421
Query: 866 ERGFADR-KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISG 924
+ R + +L + + G AL+G SG GK+T++ +L + ++G+I I G
Sbjct: 422 HFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLL--RYYDVLKGKITIDG 479
Query: 925 YP--KVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLET 982
+ F R + + N T+EE++ E+ + K + ++T
Sbjct: 480 VDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKT 539
Query: 983 IELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRA 1042
L ++LVG G LS Q++R+ IA LV NP I+ +DE T+ LDA + IV +A
Sbjct: 540 --LPNGYNTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQA 596
Query: 1043 VKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
+ GRT + H+ S I A +LI+ G+++ G
Sbjct: 597 LDKAAK-GRTTIIIAHRLST-IRNA--DLIISCKNGQVVEVG 634
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 110/236 (46%), Gaps = 31/236 (13%)
Query: 839 RMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADR-KLRLLYDVTGSLRPGVLTALMGVSG 897
R + + L++A + K Y + + +R ++ +L ++ S+ PG AL+G SG
Sbjct: 1056 RKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSG 1115
Query: 898 AGKTTLMDVLAGRKTSGYVEGEIKISGYP----KVQETFARVSGYCEQTDIHSPNITVEE 953
GK+T++ +L + + GEI I G + T ++++ ++ + + ++ E
Sbjct: 1116 CGKSTVVALL--ERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLF--DCSIAE 1171
Query: 954 SVIFSAWLRLAPEINSKTKAE----------FVNEVLETIELDAIKDSLVGIPGVNGLST 1003
++I+ L P + + E F+ E+ E E + VG G LS
Sbjct: 1172 NIIYG----LDPSSVTMAQVEEAARLANIHNFIAELPEGFE------TRVGDRGTQ-LSG 1220
Query: 1004 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQ 1059
Q++R+ IA LV NP I+ +DE T+ LD + +V A+ GRT + H+
Sbjct: 1221 GQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR-AREGRTCIVIAHR 1275
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 37/197 (18%)
Query: 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV 242
+I IL +S ++PG+ L+GP GCGKST + L D + GE+ +G +++
Sbjct: 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT---LGGEIFIDGSEIKTLN 1147
Query: 243 PPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDT 302
P T + I+ + S+E T+ + S E I+ D +
Sbjct: 1148 PEHTRSQIA-----------------------IVSQEPTLFDCSIAEN---IIYGLDPSS 1181
Query: 303 YMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG--ISGGQKKRLTTGEMIVGP 360
A + + ++I + L +T VG+ RG +SGGQK+R+ +V
Sbjct: 1182 VTMAQVEEAARLANIHNFIAE---LPEGFETRVGD---RGTQLSGGQKQRIAIARALVRN 1235
Query: 361 TKALFMDEITNGLDSST 377
K L +DE T+ LD+ +
Sbjct: 1236 PKILLLDEATSALDTES 1252
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 99/246 (40%), Gaps = 51/246 (20%)
Query: 194 LKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLE----EFVPPKTSAY 249
+ G+ L+G GCGKST + L D + G+++ +G + EF+ K A
Sbjct: 441 VNAGQTVALVGSSGCGKSTIISLLLRYYDV---LKGKITIDGVDVRDINLEFLR-KNVAV 496
Query: 250 ISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISV 309
+SQ + + T+ E + +G+ +REE + E I
Sbjct: 497 VSQ-EPALFNCTIEENISLGK--EGI-TREEMVAACKMANAEKFI--------------- 537
Query: 310 KGVKRTLQTDYILKILGLDVCADTMVGNAMRRG--ISGGQKKRLTTGEMIVGPTKALFMD 367
+TL Y +T+VG+ RG +SGGQK+R+ +V K L +D
Sbjct: 538 ----KTLPNGY-----------NTLVGD---RGTQLSGGQKQRIAIARALVRNPKILLLD 579
Query: 368 EITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGP 427
E T+ LD+ + +QQ + ++ T D II G++V G
Sbjct: 580 EATSALDAESE----GIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGD 635
Query: 428 QDHVLA 433
++A
Sbjct: 636 HRALMA 641
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 46/229 (20%)
Query: 872 RKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQET 931
+++++L + ++ G AL+G SG GK+T + ++ ++ ++G + I G
Sbjct: 401 KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDG------- 451
Query: 932 FARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIK-- 989
DI + N+ +I + P + + T AE + E + +D I+
Sbjct: 452 ----------QDIRTINVRYLREII--GVVSQEPVLFATTIAENIRYGREDVTMDEIEKA 499
Query: 990 -----------------DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
D+LVG G LS Q++R+ IA LV NP I+ +DE T+ LD
Sbjct: 500 VKEANAYDFIMKLPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALD 558
Query: 1033 ARAAAIVMRAVKNIVNTGRTIVCTIHQPSI----DIFEAFDELILLKTG 1077
+ A+V A+ GRT + H+ S D+ FD ++++ G
Sbjct: 559 TESEAVVQAALDK-AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 141/351 (40%), Gaps = 62/351 (17%)
Query: 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV 242
++ IL ++ +K G+ L+G GCGKST ++ + DP + G VS +G
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP---LDGMVSIDG------- 451
Query: 243 PPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDT 302
Q+ I +RE + GV S+E + + E D +D
Sbjct: 452 ---------QDIRTINVRYLREII-------GVVSQEPVLFATTIAENIRYGREDVTMDE 495
Query: 303 YMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG--ISGGQKKRLTTGEMIVGP 360
KA VK D+I+K L DT+VG RG +SGGQK+R+ +V
Sbjct: 496 IEKA-----VKEANAYDFIMK---LPHQFDTLVG---ERGAQLSGGQKQRIAIARALVRN 544
Query: 361 TKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420
K L +DE T+ LD+ + + A + + + + L D I G
Sbjct: 545 PKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNA----DVIAGFDGG 600
Query: 421 KIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMF 480
IV G D ++ KG+ + + V+++ + L E S +D
Sbjct: 601 VIVEQGNHDELM-----------REKGI--YFKLVMTQTAGNEIELGNEACKSKDEIDNL 647
Query: 481 --SKKFKESPLVKKLD--EELLVPYDKSK--SPKNAISFSVYSLSRWELFK 525
S K S L+++ + + P+D+ + S K A+ V S W + K
Sbjct: 648 DMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILK 698
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 103/255 (40%), Gaps = 47/255 (18%)
Query: 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP 243
I +L +S +K G+ L+G GCGKST ++ L DP + G V +G ++++
Sbjct: 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP---MAGSVFLDGKEIKQLNV 1102
Query: 244 PKTSAY---ISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVP--DP 298
A +SQ + + + ++ E + + G SR + E+ R KEA I D
Sbjct: 1103 QWLRAQLGIVSQEPI-LFDCSIAENIAY-----GDNSRVVSYEEIVRAAKEANIHQFIDS 1156
Query: 299 DIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIV 358
D Y + KG + +SGGQK+R+ +V
Sbjct: 1157 LPDKYNTRVGDKGTQ-----------------------------LSGGQKQRIAIARALV 1187
Query: 359 GPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418
L +DE T+ LD+ + +Q+ + ++ T D I+++
Sbjct: 1188 RQPHILLLDEATSALDTESE----KVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQ 1243
Query: 419 EGKIVYHGPQDHVLA 433
GK+ HG +LA
Sbjct: 1244 NGKVKEHGTHQQLLA 1258
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 24/204 (11%)
Query: 884 LRPGVLTALMGVSGAGKTTLM-------DVLAGRKTSGYVEG-EIKISGYPKVQETFARV 935
++ G AL+G SG GK+T++ D +AG S +++G EIK VQ A++
Sbjct: 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG---SVFLDGKEIK---QLNVQWLRAQL 1109
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETIELDAIKDSLV 993
G Q I + ++ E++ + R+ EI K +++ +++ L ++ V
Sbjct: 1110 -GIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDS--LPDKYNTRV 1165
Query: 994 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTI 1053
G G LS Q++R+ IA LV P I+ +DE T+ LD + +V A+ GRT
Sbjct: 1166 GDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTC 1223
Query: 1054 VCTIHQPSIDIFEAFDELILLKTG 1077
+ H+ S + D +++++ G
Sbjct: 1224 IVIAHRLS--TIQNADLIVVIQNG 1245
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 46/229 (20%)
Query: 872 RKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQET 931
+++++L + ++ G AL+G SG GK+T + ++ ++ ++G + I G
Sbjct: 401 KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDG------- 451
Query: 932 FARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIK-- 989
DI + N+ +I + P + + T AE + E + +D I+
Sbjct: 452 ----------QDIRTINVRYLREII--GVVSQEPVLFATTIAENIRYGREDVTMDEIEKA 499
Query: 990 -----------------DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
D+LVG G LS Q++R+ IA LV NP I+ +DE T+ LD
Sbjct: 500 VKEANAYDFIMKLPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALD 558
Query: 1033 ARAAAIVMRAVKNIVNTGRTIVCTIHQPSI----DIFEAFDELILLKTG 1077
+ A+V A+ GRT + H+ S D+ FD ++++ G
Sbjct: 559 TESEAVVQAALDK-AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 141/351 (40%), Gaps = 62/351 (17%)
Query: 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV 242
++ IL ++ +K G+ L+G GCGKST ++ + DP + G VS +G
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP---LDGMVSIDG------- 451
Query: 243 PPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDT 302
Q+ I +RE + GV S+E + + E D +D
Sbjct: 452 ---------QDIRTINVRYLREII-------GVVSQEPVLFATTIAENIRYGREDVTMDE 495
Query: 303 YMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG--ISGGQKKRLTTGEMIVGP 360
KA VK D+I+K L DT+VG RG +SGGQK+R+ +V
Sbjct: 496 IEKA-----VKEANAYDFIMK---LPHQFDTLVG---ERGAQLSGGQKQRIAIARALVRN 544
Query: 361 TKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420
K L +DE T+ LD+ + + A + + + + L D I G
Sbjct: 545 PKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNA----DVIAGFDGG 600
Query: 421 KIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMF 480
IV G D ++ KG+ + + V+++ + L E S +D
Sbjct: 601 VIVEQGNHDELM-----------REKGI--YFKLVMTQTAGNEIELGNEACKSKDEIDNL 647
Query: 481 --SKKFKESPLVKKLD--EELLVPYDKSK--SPKNAISFSVYSLSRWELFK 525
S K S L+++ + + P+D+ + S K A+ V S W + K
Sbjct: 648 DMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILK 698
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 103/255 (40%), Gaps = 47/255 (18%)
Query: 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP 243
I +L +S +K G+ L+G GCGKST ++ L DP + G V +G ++++
Sbjct: 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP---MAGSVFLDGKEIKQLNV 1102
Query: 244 PKTSAY---ISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVP--DP 298
A +SQ + + + ++ E + + G SR + E+ R KEA I D
Sbjct: 1103 QWLRAQLGIVSQEPI-LFDCSIAENIAY-----GDNSRVVSYEEIVRAAKEANIHQFIDS 1156
Query: 299 DIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIV 358
D Y + KG + +SGGQK+R+ +V
Sbjct: 1157 LPDKYNTRVGDKGTQ-----------------------------LSGGQKQRIAIARALV 1187
Query: 359 GPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418
L +DE T+ LD+ + +Q+ + ++ T D I+++
Sbjct: 1188 RQPHILLLDEATSALDTESE----KVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQ 1243
Query: 419 EGKIVYHGPQDHVLA 433
GK+ HG +LA
Sbjct: 1244 NGKVKEHGTHQQLLA 1258
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 24/204 (11%)
Query: 884 LRPGVLTALMGVSGAGKTTLM-------DVLAGRKTSGYVEG-EIKISGYPKVQETFARV 935
++ G AL+G SG GK+T++ D +AG S +++G EIK VQ A++
Sbjct: 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG---SVFLDGKEIK---QLNVQWLRAQL 1109
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETIELDAIKDSLV 993
G Q I + ++ E++ + R+ EI K +++ +++ L ++ V
Sbjct: 1110 -GIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDS--LPDKYNTRV 1165
Query: 994 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTI 1053
G G LS Q++R+ IA LV P I+ +DE T+ LD + +V A+ GRT
Sbjct: 1166 GDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTC 1223
Query: 1054 VCTIHQPSIDIFEAFDELILLKTG 1077
+ H+ S + D +++++ G
Sbjct: 1224 IVIAHRLS--TIQNADLIVVIQNG 1245
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 110/258 (42%), Gaps = 52/258 (20%)
Query: 182 AKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE- 240
++ + +S +K G +LLGP GCGK+T L+ ++G +PS G++ Y G KL
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQI-YIGDKLVAD 69
Query: 241 -----FVPPKTS--AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAG 293
FVPPK A + Q+ MTV + + F + + V
Sbjct: 70 PEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV------------------ 111
Query: 294 IVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTT 353
P +ID ++ ++ ++LGL T + N R +SGGQ++R+
Sbjct: 112 --PRQEIDQRVREVA--------------ELLGL-----TELLNRKPRELSGGQRQRVAL 150
Query: 354 GEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413
G IV + MDE + LD+ ++ A +++L T I + E + D
Sbjct: 151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTT-IYVTHDQVEAMTMGDR 209
Query: 414 IILMAEGKIVYHGPQDHV 431
I +M G + G D V
Sbjct: 210 IAVMNRGVLQQVGSPDEV 227
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 16/166 (9%)
Query: 883 SLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFA----RVS 936
++ G L+G SG GKTT + ++AG + G + K+ P+ + F R
Sbjct: 25 EVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPE-KGIFVPPKDRDI 83
Query: 937 GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIP 996
Q+ P++TV +++ F LR P + E V E EL + + L P
Sbjct: 84 AMVFQSYALYPHMTVYDNIAFPLKLRKVP------RQEIDQRVREVAELLGLTELLNRKP 137
Query: 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRA 1042
LS QR+R+ + +V P + MDEP + LDA+ + MRA
Sbjct: 138 --RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK-LRVRMRA 180
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 109/212 (51%), Gaps = 12/212 (5%)
Query: 869 FADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK- 927
+ D + +L D+ S+ G A +G+SG GK+TL++++ + G+I I G+
Sbjct: 349 YNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSGQILIDGHNIK 406
Query: 928 --VQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 985
+ + G +Q +I + TV+E+++ E+ K ++ + + L
Sbjct: 407 DFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFI--MNL 463
Query: 986 DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 1045
D+ VG GV LS Q++RL+IA + NP I+ +DE T+ LD + +I+ A+ +
Sbjct: 464 PQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEAL-D 521
Query: 1046 IVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
+++ RT + H+ S I A D++++++ G
Sbjct: 522 VLSKDRTTLIVAHRLS-TITHA-DKIVVIENG 551
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 104/252 (41%), Gaps = 47/252 (18%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
IL ++ ++ G +G G GKST + + D + +G++ +G+ +++F+
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTG- 411
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
S R Q +G ++ + S KE ++ P T
Sbjct: 412 -----------------------SLRNQ-IGLVQQDNILFSDTVKENILLGRP---TATD 444
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI--SGGQKKRLTTGEMIVGPTKA 363
V+ K D+I+ L DT VG RG+ SGGQK+RL+ + +
Sbjct: 445 EEVVEAAKMANAHDFIMN---LPQGYDTEVG---ERGVKLSGGQKQRLSIARIFLNNPPI 498
Query: 364 LFMDEITNGLDSSTAYQIIACIQQLVHI--TDSTALISLLQPAPETFDLFDDIILMAEGK 421
L +DE T+ LD + + IQ+ + + D T LI + T D I+++ G
Sbjct: 499 LILDEATSALDLESE----SIIQEALDVLSKDRTTLI--VAHRLSTITHADKIVVIENGH 552
Query: 422 IVYHGPQDHVLA 433
IV G ++A
Sbjct: 553 IVETGTHRELIA 564
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 107/219 (48%), Gaps = 40/219 (18%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYV--EGEIKISGY------PK 927
+L ++ S++ G + ++G SG+GK+TL ++ Y+ G++ I G+ P
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 73
Query: 928 ---------VQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNE 978
+Q+ + + +P ++VE+ VI++A L A +F++E
Sbjct: 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGA--------HDFISE 124
Query: 979 VLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 1038
+ E +++VG G GLS QR+R+ IA LV NP I+ DE T+ LD + +
Sbjct: 125 LREGY------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 177
Query: 1039 VMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
+MR + I GRT++ I + + D +I+++ G
Sbjct: 178 IMRNMHKIC-KGRTVI--IIAARLSTVKNADRIIVMEKG 213
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 104/248 (41%), Gaps = 39/248 (15%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
IL++++ +K G + ++G G GKST K + ++P
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ--------------------RFYIPEN 57
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
I +DL +A+ ++ R GV ++ ++ S + + P ++ +
Sbjct: 58 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 111
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALF 365
A + G D+I + L +T+VG G+SGGQ++R+ +V K L
Sbjct: 112 AAKLAGAH-----DFISE---LREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILI 162
Query: 366 MDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYH 425
DE T+ LD + + I+ + ++ + ++ T D II+M +GKIV
Sbjct: 163 FDEATSALDYESEHVIMRNMHKIC----KGRTVIIIAARLSTVKNADRIIVMEKGKIVEQ 218
Query: 426 GPQDHVLA 433
G +L+
Sbjct: 219 GKHKELLS 226
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 107/219 (48%), Gaps = 40/219 (18%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYV--EGEIKISGY------PK 927
+L ++ S++ G + ++G SG+GK+TL ++ Y+ G++ I G+ P
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 79
Query: 928 ---------VQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNE 978
+Q+ + + +P ++VE+ VI++A L A +F++E
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGA--------HDFISE 130
Query: 979 VLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 1038
+ E +++VG G GLS QR+R+ IA LV NP I+ DE T+ LD + +
Sbjct: 131 LREGY------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 1039 VMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
+MR + I GRT++ I + + D +I+++ G
Sbjct: 184 IMRNMHKIC-KGRTVI--IIAARLSTVKNADRIIVMEKG 219
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 104/248 (41%), Gaps = 39/248 (15%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
IL++++ +K G + ++G G GKST K + ++P
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ--------------------RFYIPEN 63
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
I +DL +A+ ++ R GV ++ ++ S + + P ++ +
Sbjct: 64 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 117
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALF 365
A + G D+I + L +T+VG G+SGGQ++R+ +V K L
Sbjct: 118 AAKLAGAH-----DFISE---LREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILI 168
Query: 366 MDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYH 425
DE T+ LD + + I+ + ++ + ++ T D II+M +GKIV
Sbjct: 169 FDEATSALDYESEHVIMRNMHKIC----KGRTVIIIAARLSTVKNADRIIVMEKGKIVEQ 224
Query: 426 GPQDHVLA 433
G +L+
Sbjct: 225 GKHKELLS 232
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 13/193 (6%)
Query: 872 RKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVL----AGRKTSGYVEG-EIKISGYP 926
R +L ++ S++ G +++G SG+GK+TL+ +L A + ++EG E+ +
Sbjct: 15 RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEK 74
Query: 927 KVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD 986
++ R G+ Q P +T E+VI P+ +K + E++ L
Sbjct: 75 ELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL------ 128
Query: 987 AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI 1046
+ D L P LS +++R+ IA L P ++F DEPT LD+ VM I
Sbjct: 129 GLGDKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI 186
Query: 1047 VNTGRTIVCTIHQ 1059
G +IV H+
Sbjct: 187 NEGGTSIVMVTHE 199
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 58/246 (23%), Positives = 97/246 (39%), Gaps = 54/246 (21%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLK----VTG-EVSYNGYKLEE 240
IL +S +K G ++G G GKST L L G LD + + G EV Y K
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEGKVFLEGKEVDYTNEKELS 77
Query: 241 FVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDI 300
+ + ++ Q I E+T E V M+++ + +KEA
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALENVIVP------------MLKMGKPKKEA-------- 117
Query: 301 DTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG---ISGGQKKRLTTGEMI 357
+ +Y+L LGL G+ + R +SGG+++R+ +
Sbjct: 118 --------------KERGEYLLSELGL--------GDKLSRKPYELSGGEQQRVAIARAL 155
Query: 358 VGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILM 417
LF DE T LDS+ +++ + I + I ++ E +L + M
Sbjct: 156 ANEPILLFADEPTGNLDSANTKRVMDI---FLKINEGGTSIVMVTHERELAELTHRTLEM 212
Query: 418 AEGKIV 423
+GK+V
Sbjct: 213 KDGKVV 218
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 59.3 bits (142), Expect = 2e-08, Method: Composition-based stats.
Identities = 55/208 (26%), Positives = 100/208 (48%), Gaps = 14/208 (6%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLA--GRKTSG--YVEGEIKISGYPKVQETF 932
L +V +++ G ++MG SG+GK+T+++++ + T G Y++ IK + + T
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID-NIKTNDLDDDELTK 79
Query: 933 ARVS--GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKD 990
R G+ Q P +T E+V + ++ + + + E L+ EL+
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE---- 135
Query: 991 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI-VNT 1049
N LS Q++R+ IA L NP II D+PT LD++ +M+ +K +
Sbjct: 136 ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEED 195
Query: 1050 GRTIVCTIHQPSIDIFEAFDELILLKTG 1077
G+T+V H I++ + +I LK G
Sbjct: 196 GKTVVVVTH--DINVARFGERIIYLKDG 221
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 59/224 (26%), Positives = 92/224 (41%), Gaps = 35/224 (15%)
Query: 167 MISVLPKLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLK 226
MI + YK E I L +V+ +K G ++GP G GKST L + G LD +
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTE 59
Query: 227 VTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTV--RETVDFSARCQGVGSREETMME 284
GEV + I NDL E+T R+ + F V + +
Sbjct: 60 --GEVYIDN--------------IKTNDLDDDELTKIRRDKIGF------VFQQFNLIPL 97
Query: 285 VSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGIS 344
++ E V P I Y A+S G +R + LK+ L + N +S
Sbjct: 98 LTALEN----VELPLIFKYRGAMS--GEERRKRALECLKMAEL----EERFANHKPNQLS 147
Query: 345 GGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQL 388
GGQ++R+ + + D+ T LDS T +I+ +++L
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL 191
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 104/252 (41%), Gaps = 46/252 (18%)
Query: 182 AKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEF 241
K+ ++ VS +K G LLGP GCGK+T L L+G P+ +GE+ ++ + +
Sbjct: 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVND- 69
Query: 242 VPPK--TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPD 299
+PPK + QN MTV E + F R + +S+ E E +V
Sbjct: 70 IPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR----------RISKDEVEKRVV---- 115
Query: 300 IDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVG 359
+ R L D +L + +SGGQ++R+ +V
Sbjct: 116 -----------EIARKLLIDNLL--------------DRKPTQLSGGQQQRVALARALVK 150
Query: 360 PTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE 419
K L DE + LD++ + A I+ L T+ + + E + I + +
Sbjct: 151 QPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITS-VYVTHDQAEAMTMASRIAVFNQ 209
Query: 420 GKIVYHGPQDHV 431
GK+V +G D V
Sbjct: 210 GKLVQYGTPDEV 221
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 17/178 (9%)
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKISGYPKV 928
K++ + V+ ++ G AL+G SG GKTT + +LAG + TSG Y + + PK
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY 74
Query: 929 QETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI 988
+E G Q P++TV E++ F R I+ + V E+ + +D +
Sbjct: 75 REV-----GMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNL 126
Query: 989 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI 1046
D LS Q++R+ +A LV P ++ DEP + LDA I+ +K++
Sbjct: 127 LDR-----KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHL 179
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 100/215 (46%), Gaps = 32/215 (14%)
Query: 862 LEMRERGFA-DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEI 920
L R FA D ++L D++ +P + A G SG GK+T+ +L + GEI
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEI 59
Query: 921 KISGYPKVQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVN 977
I G P E + G+ Q +S I + +R + + ++ +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQ-----------DSAIMAGTIR--ENLTYGLEGDYTD 106
Query: 978 EVL-ETIEL-------DAIKDSL---VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1026
E L + ++L + + D L VG GV +S QR+RL IA + NP I+ +DE
Sbjct: 107 EDLWQVLDLAFARSFVENMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDE 165
Query: 1027 PTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPS 1061
T LD+ + ++V +A+ +++ GRT + H+ S
Sbjct: 166 ATASLDSESESMVQKALDSLMK-GRTTLVIAHRLS 199
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 95/254 (37%), Gaps = 48/254 (18%)
Query: 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP 244
IL +S +P + GP G GKST L P+ GE++ +G ++
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72
Query: 245 K---TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREE--TMMEVSRREKEAGIVPDPD 299
++SQ D I T+RE + + +G + E+ +++++ +PD
Sbjct: 73 NWRSQIGFVSQ-DSAIMAGTIRENLTYG--LEGDYTDEDLWQVLDLAFARSFVENMPD-- 127
Query: 300 IDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVG 359
+ +GVK ISGGQ++RL +
Sbjct: 128 --QLNTEVGERGVK-----------------------------ISGGQRQRLAIARAFLR 156
Query: 360 PTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE 419
K L +DE T LDS + + + L+ + + L + D I + +
Sbjct: 157 NPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDA----DKIYFIEK 212
Query: 420 GKIVYHGPQDHVLA 433
G+I G + ++A
Sbjct: 213 GQITGSGKHNELVA 226
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 147/341 (43%), Gaps = 57/341 (16%)
Query: 774 FGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEPVKENSRSTPMTNK 833
G AL+ G LAL + + G+ I + + + P+ E S M
Sbjct: 273 LGFALISGFGGWLALKDIITVGTIATFIGYSR----------QFTRPLNELSNQFNMI-- 320
Query: 834 ESYKGRMVLPFEPLTVAFQDLKYYVDTP--LEMRE-RG--------FA-DRKLRLLYDVT 881
+M L DL+ D P +E+RE RG F+ D+K +L D+T
Sbjct: 321 -----QMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDIT 375
Query: 882 GSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP--KVQETFARVSGYC 939
++PG AL+G +G+GKTT++++L + G+I + G K++ + R S
Sbjct: 376 FHIKPGQKVALVGPTGSGKTTIVNLLM--RFYDVDRGQILVDGIDIRKIKRSSLRSSIGI 433
Query: 940 EQTDIHSPNITVEESVIFSAWLRLAPEINSKTK-------AEFVNEVLETIELDAIKDSL 992
D + TV+E++ + EI K + + E ET+ D +D
Sbjct: 434 VLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGED-- 491
Query: 993 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRT 1052
LS QR+ L I +ANP I+ +DE T+ +D + + A+ ++ G+T
Sbjct: 492 --------LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-GKT 542
Query: 1053 IVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQV 1093
+ H+ ++ + D +I+L+ G + +GKH +
Sbjct: 543 SIIIAHR--LNTIKNADLIIVLRDGEIV----EMGKHDELI 577
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 106/256 (41%), Gaps = 43/256 (16%)
Query: 179 SLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKL 238
S + K +L ++ +KPG+ L+GP G GK+T + L D G++ +G +
Sbjct: 363 SYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDI 419
Query: 239 EEFVPP--KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVP 296
+ ++S I D + TV+E + + G+ +E + E ++
Sbjct: 420 RKIKRSSLRSSIGIVLQDTILFSTTVKENLKYG----NPGATDEEIKEAAKLTHS----- 470
Query: 297 DPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEM 356
D ++K + +G + L + G D +S GQ++ L
Sbjct: 471 ----DHFIKHLP-EGYETVLTDN------GED--------------LSQGQRQLLAITRA 505
Query: 357 IVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIIL 416
+ K L +DE T+ +D+ T I A + +L+ S + L T D II+
Sbjct: 506 FLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLN----TIKNADLIIV 561
Query: 417 MAEGKIVYHGPQDHVL 432
+ +G+IV G D ++
Sbjct: 562 LRDGEIVEMGKHDELI 577
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 21/216 (9%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIK-----ISGYPKVQ 929
L + +++ G +TA++G +G GK+TL G + +SG + + K G K++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 930 ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIK 989
E+ V + D + +V + V F A PE + + V+ L+ ++ +K
Sbjct: 84 ESIGIV---FQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKR---VDNALKRTGIEHLK 137
Query: 990 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT 1049
D + LS Q+KR+ IA LV P ++ +DEPT GLD + +M+ + +
Sbjct: 138 DK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192
Query: 1050 -GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
G TI+ H IDI + + + + GR+I G
Sbjct: 193 LGITIIIATH--DIDIVPLYCDNVFVMKEGRVILQG 226
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 113/291 (38%), Gaps = 86/291 (29%)
Query: 194 LKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQN 253
+K G +T +LG G GKST + +G L PS +G + ++
Sbjct: 31 IKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFD------------------- 68
Query: 254 DLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIV-PDPDIDTYMKAI----S 308
+ +D+S + G+ E++ GIV DPD + ++ S
Sbjct: 69 ---------NKPIDYSRK--GIMKLRESI----------GIVFQDPDNQLFSASVYQDVS 107
Query: 309 VKGVKRTLQTDYILKILGLDVCADTMVGNAMRR-GI-----------SGGQKKRLTTGEM 356
V L D I K V NA++R GI S GQKKR+ +
Sbjct: 108 FGAVNMKLPEDEIRK----------RVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV 157
Query: 357 IVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLF----D 412
+V K L +DE T GLD +I+ + ++ T +I A D+ D
Sbjct: 158 LVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIII-----ATHDIDIVPLYCD 212
Query: 413 DIILMAEGKIVYHGPQDHVLAFFE---DCGFRCPERKGVSDFLQEVLSRKD 460
++ +M EG+++ G V A E R P R G L E+L KD
Sbjct: 213 NVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLP-RIG---HLMEILKEKD 259
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 100/208 (48%), Gaps = 14/208 (6%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLA--GRKTSG--YVEGEIKISGYPKVQETF 932
L +V +++ G ++MG SG+GK+T+++++ + T G Y++ IK + + T
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDN-IKTNDLDDDELTK 79
Query: 933 ARVS--GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKD 990
R G+ Q P +T E+V + ++ + + + E L+ EL+
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE---- 135
Query: 991 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI-VNT 1049
N LS Q++R+ IA L NP II D+PT LD++ +M+ +K +
Sbjct: 136 ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEED 195
Query: 1050 GRTIVCTIHQPSIDIFEAFDELILLKTG 1077
G+T+V H I++ + +I LK G
Sbjct: 196 GKTVVVVTH--DINVARFGERIIYLKDG 221
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 91/224 (40%), Gaps = 35/224 (15%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
YK E I L +V+ +K G ++GP G GKST L + G LD GEV +
Sbjct: 11 YKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKP--TEGEVYIDN- 66
Query: 237 KLEEFVPPKTSAYISQNDLHIAEMTV--RETVDFSARCQGVGSREETMMEVSRREKEAGI 294
I NDL E+T R+ + F V + + ++ E
Sbjct: 67 -------------IKTNDLDDDELTKIRRDKIGF------VFQQFNLIPLLTALEN---- 103
Query: 295 VPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTG 354
V P I Y A+S G +R + LK+ L + N +SGGQ++R+
Sbjct: 104 VELPLIFKYRGAMS--GEERRKRALECLKMAEL----EERFANHKPNQLSGGQQQRVAIA 157
Query: 355 EMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI 398
+ + D+ T LDS T +I+ +++L T ++
Sbjct: 158 RALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVV 201
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 19/162 (11%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVE-GEIKISGYPKVQETFA 933
L ++ ++ G AL+G SG+GK+TL+ +AG + TSG + E ++ P
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD---- 74
Query: 934 RVSGYCEQTDIHSPNITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETIELDAIKDS 991
R G Q P++TV +++ F LR AP EI+ K V EV + + +D + +
Sbjct: 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK-----VREVAKMLHIDKLLNR 129
Query: 992 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 1033
LS Q++R+ IA LV P ++ +DEP + LDA
Sbjct: 130 YPW-----QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 104/247 (42%), Gaps = 46/247 (18%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
LN+++ +K G LLGP G GKST L ++G P+ +G++ ++ + E PPK
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTEL-PPKD 74
Query: 247 S--AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYM 304
+ QN MTV + + F +E+ + P +ID
Sbjct: 75 RNVGLVFQNWALYPHMTVYKNIAFP-------------LELRK-------APREEIDK-- 112
Query: 305 KAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKAL 364
V+ V + L D +L N +SGGQ++R+ +V + L
Sbjct: 113 ---KVREVAKMLHIDKLL--------------NRYPWQLSGGQQQRVAIARALVKEPEVL 155
Query: 365 FMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVY 424
+DE + LD+ ++ A +++L T + + E + D I ++ EG+I+
Sbjct: 156 LLDEPLSNLDALLRLEVRAELKRLQKELGITT-VYVTHDQAEALAMADRIAVIREGEILQ 214
Query: 425 HGPQDHV 431
G D V
Sbjct: 215 VGTPDEV 221
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 117/250 (46%), Gaps = 22/250 (8%)
Query: 831 TNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLT 890
+ +E +G+ V+ V F+++ + + R + L ++ + G
Sbjct: 324 SEQEKDEGKRVIERATGDVEFRNVTFT-----------YPGRDVPALRNINLKIPAGKTV 372
Query: 891 ALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCE--QTDIHSPN 948
AL+G SG+GK+T+ ++ + EGEI + G+ + T A + ++H N
Sbjct: 373 ALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFN 430
Query: 949 ITVEESVIFSAWLRLAPE-INSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRK 1007
TV ++ ++ + + E I + + + + ++D D+++G GV LS QR+
Sbjct: 431 DTVANNIAYARTEQYSREQIEEAARMAYAMDFIN--KMDNGLDTVIGENGVL-LSGGQRQ 487
Query: 1008 RLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEA 1067
R+ IA L+ + I+ +DE T+ LD + + A+ + RT + H+ S E
Sbjct: 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QKNRTSLVIAHRLS--TIEK 544
Query: 1068 FDELILLKTG 1077
DE+++++ G
Sbjct: 545 ADEIVVVEDG 554
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 110/251 (43%), Gaps = 48/251 (19%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP-- 244
L +++ + G+ L+G G GKST ++ D GE+ +G+ L E+
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGEILMDGHDLREYTLASL 415
Query: 245 -KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTY 303
A +SQN +H+ TV + + AR + + SR + E
Sbjct: 416 RNQVALVSQN-VHLFNDTVANNIAY-ARTE----------QYSREQIE------------ 451
Query: 304 MKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI--SGGQKKRLTTGEMIVGPT 361
+ + D+I K +D DT++G G+ SGGQ++R+ ++ +
Sbjct: 452 ------EAARMAYAMDFINK---MDNGLDTVIGE---NGVLLSGGQRQRIAIARALLRDS 499
Query: 362 KALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421
L +DE T+ LD+ + I A + +L + T+L+ + T + D+I+++ +G
Sbjct: 500 PILILDEATSALDTESERAIQAALDELQK--NRTSLV--IAHRLSTIEKADEIVVVEDGV 555
Query: 422 IVYHGPQDHVL 432
IV G + +L
Sbjct: 556 IVERGTHNDLL 566
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 107/219 (48%), Gaps = 26/219 (11%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGY----VEGEIKISGYPKVQE 930
R L + + G AL+G +G+GK+T+ +L Y EG+IKI G K
Sbjct: 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL-------YRFYDAEGDIKIGG--KNVN 84
Query: 931 TFARVS-----GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 985
+ R S G Q D N T++ ++++ E+ TK+ + + +E L
Sbjct: 85 KYNRNSIRSIIGIVPQ-DTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEA--L 141
Query: 986 DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 1045
D++VG G+ LS +R+R+ IA L+ +P I+ DE T+ LD++ + +AV++
Sbjct: 142 PKKWDTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED 200
Query: 1046 IVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
+ RT++ H+ S I A E I+L G+I+ G
Sbjct: 201 L-RKNRTLIIIAHRLST-ISSA--ESIILLNKGKIVEKG 235
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 332 DTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHI 391
DT+VGN + +SGG+++R+ ++ K + DE T+ LDS T Y Q+ V
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY----LFQKAVED 200
Query: 392 TDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVL 432
+ ++ T + IIL+ +GKIV G +L
Sbjct: 201 LRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL 241
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 97/197 (49%), Gaps = 23/197 (11%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQET---- 931
+ D + S+ G +TAL+G SG+GK+T++ +L + G I + G+ Q
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWL 416
Query: 932 FARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIK-- 989
+++ ++ + S +I E++ + A + S AE + V E A
Sbjct: 417 RSKIGTVSQEPILFSCSIA--ENIAYGA------DDPSSVTAEEIQRVAEVANAVAFIRN 468
Query: 990 -----DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1044
+++VG GV LS Q++R+ IA L+ NP I+ +DE T+ LDA +V A+
Sbjct: 469 FPQGFNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALD 527
Query: 1045 NIVNTGRTIVCTIHQPS 1061
+++ GRT++ H+ S
Sbjct: 528 RLMD-GRTVLVIAHRLS 543
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 42/240 (17%)
Query: 197 GRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLH 256
G +T L+GP G GKST L L DP+ +G +S +G+ + + P + I
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKI------ 420
Query: 257 IAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTL 316
G S+E + S E A DP +++ + ++R
Sbjct: 421 -----------------GTVSQEPILFSCSIAENIAYGADDPS------SVTAEEIQRVA 457
Query: 317 Q-TDYILKILGLDVCADTMVGNAMRRGI--SGGQKKRLTTGEMIVGPTKALFMDEITNGL 373
+ + + I +T+VG +G+ SGGQK+R+ ++ K L +DE T+ L
Sbjct: 458 EVANAVAFIRNFPQGFNTVVG---EKGVLLSGGQKQRIAIARALLKNPKILLLDEATSAL 514
Query: 374 DSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLA 433
D+ Y + + +L+ T L+ + T + + ++ +GKI +G + +L+
Sbjct: 515 DAENEYLVQEALDRLMD--GRTVLV--IAHRLSTIKNANMVAVLDQGKITEYGKHEELLS 570
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 96/197 (48%), Gaps = 23/197 (11%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQET---- 931
+ D + S+ G +TAL+G SG+GK+T++ +L + G I + G+ Q
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWL 447
Query: 932 FARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIK-- 989
+++ ++ + S ++ E++ + A + S AE + V E A
Sbjct: 448 RSKIGTVSQEPILFS--CSIAENIAYGA------DDPSSVTAEEIQRVAEVANAVAFIRN 499
Query: 990 -----DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1044
+++VG GV LS Q++R+ IA L+ NP I+ +DE T+ LDA +V A+
Sbjct: 500 FPQGFNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALD 558
Query: 1045 NIVNTGRTIVCTIHQPS 1061
+++ GRT++ H S
Sbjct: 559 RLMD-GRTVLVIAHHLS 574
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 42/240 (17%)
Query: 197 GRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLH 256
G +T L+GP G GKST L L DP+ +G +S +G+ + + P
Sbjct: 401 GSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNP------------- 444
Query: 257 IAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTL 316
+ +R + G S+E + S E A DP +++ + ++R
Sbjct: 445 ---VWLRSKI-------GTVSQEPILFSCSIAENIAYGADDPS------SVTAEEIQRVA 488
Query: 317 Q-TDYILKILGLDVCADTMVGNAMRRGI--SGGQKKRLTTGEMIVGPTKALFMDEITNGL 373
+ + + I +T+VG +G+ SGGQK+R+ ++ K L +DE T+ L
Sbjct: 489 EVANAVAFIRNFPQGFNTVVGE---KGVLLSGGQKQRIAIARALLKNPKILLLDEATSAL 545
Query: 374 DSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLA 433
D+ Y + + +L+ T L+ + T + + ++ +GKI +G + +L+
Sbjct: 546 DAENEYLVQEALDRLMD--GRTVLV--IAHHLSTIKNANMVAVLDQGKITEYGKHEELLS 601
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 54/214 (25%), Positives = 105/214 (49%), Gaps = 26/214 (12%)
Query: 880 VTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYC 939
++G +R G + L+G +GAGK+TL+ +AG TSG +G I+ +G P + +++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG--KGSIQFAGQPLEAWSATKLA--- 72
Query: 940 EQTDIHSPNITVEESVIFSA--WLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPG 997
+H ++ +++ F+ W L + KT+ E +N+V + LD D L
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD---DKLG--RS 123
Query: 998 VNGLSTEQRKRLTIAVELV-----ANPS--IIFMDEPTTGLDARAAAIVMRAVKNIVNTG 1050
N LS + +R+ +A ++ ANP+ ++ +D+P LD + + + + + G
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQG 183
Query: 1051 RTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
IV + H + + A +L GG+++ G
Sbjct: 184 LAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASG 215
Score = 35.4 bits (80), Expect = 0.22, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L +SG ++ G + L+GP G GKST L ++G G + + G LE + K
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK----GSIQFAGQPLEAWSATKL 71
Query: 247 S---AYISQ 252
+ AY+SQ
Sbjct: 72 ALHRAYLSQ 80
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/188 (26%), Positives = 93/188 (49%), Gaps = 24/188 (12%)
Query: 880 VTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYC 939
++G +R G + L+G +GAGK+TL+ AG TSG +G I+ +G P + +++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSG--KGSIQFAGQPLEAWSATKLA--- 72
Query: 940 EQTDIHSPNITVEESVIFSA--WLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPG 997
+H ++ +++ F+ W L + KT+ E +N+V + LD D L
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD---DKLG--RS 123
Query: 998 VNGLSTEQRKRLTIAVELV-----ANPS--IIFMDEPTTGLDARAAAIVMRAVKNIVNTG 1050
N LS + +R+ +A ++ ANP+ ++ +DEP LD + + + + + G
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQG 183
Query: 1051 RTIVCTIH 1058
IV + H
Sbjct: 184 LAIVXSSH 191
Score = 34.7 bits (78), Expect = 0.36, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L +SG ++ G + L+GP G GKST L +G G + + G LE + K
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGK----GSIQFAGQPLEAWSATKL 71
Query: 247 S---AYISQ 252
+ AY+SQ
Sbjct: 72 ALHRAYLSQ 80
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 54/214 (25%), Positives = 105/214 (49%), Gaps = 26/214 (12%)
Query: 880 VTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYC 939
++G +R G + L+G +GAGK+TL+ +AG TSG +G I+ +G P + +++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG--KGSIQFAGQPLEAWSATKLA--- 72
Query: 940 EQTDIHSPNITVEESVIFSA--WLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPG 997
+H ++ +++ F+ W L + KT+ E +N+V + LD D L
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD---DKLG--RS 123
Query: 998 VNGLSTEQRKRLTIAVELV-----ANPS--IIFMDEPTTGLDARAAAIVMRAVKNIVNTG 1050
N LS + +R+ +A ++ ANP+ ++ +D+P LD + + + + + G
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQG 183
Query: 1051 RTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
IV + H + + A +L GG+++ G
Sbjct: 184 LAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASG 215
Score = 35.4 bits (80), Expect = 0.22, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L +SG ++ G + L+GP G GKST L ++G G + + G LE + K
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK----GSIQFAGQPLEAWSATKL 71
Query: 247 S---AYISQ 252
+ AY+SQ
Sbjct: 72 ALHRAYLSQ 80
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 105/221 (47%), Gaps = 13/221 (5%)
Query: 862 LEMRERGFA--DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGE 919
LE R F R++ L ++ + G AL+G SG+GK+T+ ++ + EG
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGH 399
Query: 920 IKISGYPKVQETFARVSGYCE--QTDIHSPNITVEESVIFSAWLRLAPE-INSKTKAEFV 976
I + G+ + T A + ++H N TV ++ ++ + E I + +
Sbjct: 400 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 459
Query: 977 NEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 1036
+ + ++D D+++G GV LS QR+R+ IA L+ + I+ +DE T+ LD +
Sbjct: 460 MDFIN--KMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516
Query: 1037 AIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
+ A+ + RT + H+ S E DE+++++ G
Sbjct: 517 RAIQAALDEL-QKNRTSLVIAHRLS--TIEQADEIVVVEDG 554
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 109/252 (43%), Gaps = 48/252 (19%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP-- 244
L +++ + G+ L+G G GKST ++ D G + +G+ L E+
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASL 415
Query: 245 -KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTY 303
A +SQN +H+ TV + + AR + E SR + E
Sbjct: 416 RNQVALVSQN-VHLFNDTVANNIAY-ARTE----------EYSREQIE------------ 451
Query: 304 MKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI--SGGQKKRLTTGEMIVGPT 361
+ + D+I K +D DT++G G+ SGGQ++R+ ++ +
Sbjct: 452 ------EAARMAYAMDFINK---MDNGLDTIIGE---NGVLLSGGQRQRIAIARALLRDS 499
Query: 362 KALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421
L +DE T+ LD+ + I A + +L + T+L+ + T + D+I+++ +G
Sbjct: 500 PILILDEATSALDTESERAIQAALDELQK--NRTSLV--IAHRLSTIEQADEIVVVEDGI 555
Query: 422 IVYHGPQDHVLA 433
IV G +LA
Sbjct: 556 IVERGTHSELLA 567
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 50/188 (26%), Positives = 93/188 (49%), Gaps = 24/188 (12%)
Query: 880 VTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYC 939
++G +R G + L+G +GAGK+TL+ AG TSG +G I+ +G P + +++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSG--KGSIQFAGQPLEAWSATKLA--- 72
Query: 940 EQTDIHSPNITVEESVIFSA--WLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPG 997
+H ++ +++ F+ W L + KT+ E +N+V + LD D L
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD---DKLG--RS 123
Query: 998 VNGLSTEQRKRLTIAVELV-----ANPS--IIFMDEPTTGLDARAAAIVMRAVKNIVNTG 1050
N LS + +R+ +A ++ ANP+ ++ +DEP LD + + + + + G
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQG 183
Query: 1051 RTIVCTIH 1058
IV + H
Sbjct: 184 LAIVXSSH 191
Score = 34.7 bits (78), Expect = 0.36, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L +SG ++ G + L+GP G GKST L +G G + + G LE + K
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGK----GSIQFAGQPLEAWSATKL 71
Query: 247 S---AYISQ 252
+ AY+SQ
Sbjct: 72 ALHRAYLSQ 80
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 7/203 (3%)
Query: 887 GVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ETFARVSGYCE-QT 942
G + ALMG +GAGK+TL +LAG GEI + G ++ + AR + Q
Sbjct: 29 GEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQY 88
Query: 943 DIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLS 1002
+ P +T+ + + +L E+ AEF +V + +EL +S + G S
Sbjct: 89 PVEVPGVTIANFLRLALQAKLGREVGV---AEFWTKVKKALELLDWDESYLSRYLNEGFS 145
Query: 1003 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSI 1062
++KR I LV P+ +DE +GLD A +V R V + + H I
Sbjct: 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI 205
Query: 1063 DIFEAFDELILLKTGGRIIYCGP 1085
+ D++ ++ G + GP
Sbjct: 206 LNYIQPDKVHVMMDGRVVATGGP 228
Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 50/250 (20%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVT-GEVSYNGYKLEEFVPP 244
IL V+ ++ G + L+GP G GKST K L+G DP V GE+ +G + E P
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG--DPEYTVERGEILLDGENILELSPD 75
Query: 245 KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYM 304
+ ++ L +A + GV T+ R +A + + + +
Sbjct: 76 ER----ARKGLFLA-------FQYPVEVPGV-----TIANFLRLALQAKLGREVGVAEFW 119
Query: 305 KAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIV-GPTKA 363
VK+ L+ +L D ++ + + G SGG+KKR +++V PT A
Sbjct: 120 TK-----VKKALE------LLDWD---ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYA 165
Query: 364 LFMDEITNGLDSSTAYQIIACIQQL-------VHITDSTALISLLQPAPETFDLFDDIIL 416
+ +DE +GLD + + + + IT +++ +QP D + +
Sbjct: 166 V-LDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQP--------DKVHV 216
Query: 417 MAEGKIVYHG 426
M +G++V G
Sbjct: 217 MMDGRVVATG 226
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 15/198 (7%)
Query: 883 SLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVE-GEIKISGYPKVQETFARVSGYC 939
+++ G L+G SG GKTT + ++AG T G + G+ ++ P + V
Sbjct: 34 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF--- 90
Query: 940 EQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVN 999
Q+ P++TV E++ F ++ P+ + + E+L+ EL L P
Sbjct: 91 -QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LNRYPA-- 141
Query: 1000 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQ 1059
LS QR+R+ +A +V P ++ MDEP + LDA+ + +K + + +
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
Query: 1060 PSIDIFEAFDELILLKTG 1077
++ D + ++ G
Sbjct: 202 DQVEAMTMGDRIAVMNRG 219
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 99/242 (40%), Gaps = 46/242 (19%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
+N ++ +K G +LLGP GCGK+T L+ ++G +P+ G + Y G + ++PPK
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRI-YFGDRDVTYLPPKD 83
Query: 247 S--AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYM 304
+ + Q+ MTV E + F + + P +ID
Sbjct: 84 RNISMVFQSYAVWPHMTVYENIAFPLKIKK--------------------FPKDEIDK-- 121
Query: 305 KAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKAL 364
V+ LQ + +L N +SGGQ++R+ IV L
Sbjct: 122 ---RVRWAAELLQIEELL--------------NRYPAQLSGGQRQRVAVARAIVVEPDVL 164
Query: 365 FMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVY 424
MDE + LD+ + A I++L T I + E + D I +M G+++
Sbjct: 165 LMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT-IYVTHDQVEAMTMGDRIAVMNRGQLLQ 223
Query: 425 HG 426
G
Sbjct: 224 IG 225
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 99/213 (46%), Gaps = 11/213 (5%)
Query: 872 RKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDV--LAGRKTSGYVEGEIKISGYPKVQ 929
R ++ L +V+ + G + ++G SGAGK+TL+ L R T EG + + G
Sbjct: 16 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTT 71
Query: 930 ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIK 989
+ + ++ Q + + + S + L E+++ K E V E + L +
Sbjct: 72 LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG 131
Query: 990 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT 1049
D P + LS Q++R+ IA L +NP ++ DE T+ LD ++ +K+I
Sbjct: 132 DKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRR 189
Query: 1050 -GRTIVCTIHQPSIDIFEAFDELILLKTGGRII 1081
G TI+ H+ +D+ + + + + + G +I
Sbjct: 190 LGLTILLITHE--MDVVKRICDCVAVISNGELI 220
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 36/205 (17%)
Query: 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP 243
I LN+VS + G++ ++G G GKST ++ ++ P+ G V +G +L
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQEL----- 69
Query: 244 PKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTY 303
T+ E+ AR Q +G + +S R + ++D
Sbjct: 70 ----------------TTLSESELTKARRQ-IGMIFQHFNLLSSRTVFGNVALPLELDNT 112
Query: 304 MKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKA 363
K VKR + +L ++GL D+ N +SGGQK+R+ + K
Sbjct: 113 PK----DEVKR--RVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKV 161
Query: 364 LFMDEITNGLDSSTAYQIIACIQQL 388
L DE T+ LD +T I+ ++ +
Sbjct: 162 LLCDEATSALDPATTRSILELLKDI 186
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 15/198 (7%)
Query: 883 SLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVE-GEIKISGYPKVQETFARVSGYC 939
+++ G L+G SG GKTT + ++AG T G + G+ ++ P + V
Sbjct: 33 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF--- 89
Query: 940 EQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVN 999
Q+ P++TV E++ F ++ P+ + + E+L+ EL L P
Sbjct: 90 -QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LNRYPA-- 140
Query: 1000 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQ 1059
LS QR+R+ +A +V P ++ MDEP + LDA+ + +K + + +
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
Query: 1060 PSIDIFEAFDELILLKTG 1077
++ D + ++ G
Sbjct: 201 DQVEAMTMGDRIAVMNRG 218
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 99/242 (40%), Gaps = 46/242 (19%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
+N ++ +K G +LLGP GCGK+T L+ ++G +P+ G + Y G + ++PPK
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRI-YFGDRDVTYLPPKD 82
Query: 247 S--AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYM 304
+ + Q+ MTV E + F + + P +ID
Sbjct: 83 RNISMVFQSYAVWPHMTVYENIAFPLKIKK--------------------FPKDEIDK-- 120
Query: 305 KAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKAL 364
V+ LQ + +L N +SGGQ++R+ IV L
Sbjct: 121 ---RVRWAAELLQIEELL--------------NRYPAQLSGGQRQRVAVARAIVVEPDVL 163
Query: 365 FMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVY 424
MDE + LD+ + A I++L T I + E + D I +M G+++
Sbjct: 164 LMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT-IYVTHDQVEAMTMGDRIAVMNRGQLLQ 222
Query: 425 HG 426
G
Sbjct: 223 IG 224
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 53.9 bits (128), Expect = 6e-07, Method: Composition-based stats.
Identities = 51/213 (23%), Positives = 97/213 (45%), Gaps = 11/213 (5%)
Query: 872 RKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDV--LAGRKTSGYVEGEIKISGYPKVQ 929
R ++ L +V+ + G + ++G SGAGK+TL+ L R T EG + + G
Sbjct: 39 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTT 94
Query: 930 ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIK 989
+ + ++ Q + + S + L E+++ K E V E + L +
Sbjct: 95 LSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG 154
Query: 990 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI-VN 1048
D P + LS Q++R+ IA L +NP ++ D+ T+ LD ++ +K+I
Sbjct: 155 DKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 1049 TGRTIVCTIHQPSIDIFEAFDELILLKTGGRII 1081
G TI+ H+ D+ + + + + + G +I
Sbjct: 213 LGLTILLITHE--XDVVKRICDCVAVISNGELI 243
Score = 38.5 bits (88), Expect = 0.031, Method: Composition-based stats.
Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 36/205 (17%)
Query: 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP 243
I LN+VS + G++ ++G G GKST ++ ++ P+ G V +G +L
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQEL----- 92
Query: 244 PKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTY 303
T+ E+ AR Q +G + +S R + ++D
Sbjct: 93 ----------------TTLSESELTKARRQ-IGXIFQHFNLLSSRTVFGNVALPLELDNT 135
Query: 304 MKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKA 363
K VKR + +L ++GL D+ N +SGGQK+R+ + K
Sbjct: 136 PK----DEVKRRVTE--LLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKV 184
Query: 364 LFMDEITNGLDSSTAYQIIACIQQL 388
L D+ T+ LD +T I+ ++ +
Sbjct: 185 LLCDQATSALDPATTRSILELLKDI 209
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 55/243 (22%), Positives = 100/243 (41%), Gaps = 44/243 (18%)
Query: 190 VSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTS-A 248
VS ++ G M LLGP G GK+T L+ ++G P+ G+V G ++ + P K +
Sbjct: 34 VSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVG 90
Query: 249 YISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAIS 308
+ QN MTV + V F G RE+ VP ++D ++ +
Sbjct: 91 LVFQNYALFQHMTVYDNVSF-------GLREKR-------------VPKDEMDARVREL- 129
Query: 309 VKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDE 368
L+ + L+ A N +SGGQ++R+ + + L DE
Sbjct: 130 -------------LRFMRLESYA-----NRFPHELSGGQQQRVALARALAPRPQVLLFDE 171
Query: 369 ITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGPQ 428
+D+ ++ ++Q VH + + E ++ D ++++ EG + G
Sbjct: 172 PFAAIDTQIRRELRTFVRQ-VHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTP 230
Query: 429 DHV 431
+ V
Sbjct: 231 EEV 233
Score = 50.1 bits (118), Expect = 9e-06, Method: Composition-based stats.
Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 17/207 (8%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVE-GEIKISGYPKVQET 931
R + V+ +R G + L+G SG+GKTT++ ++AG R T G V G +++ P +
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK-- 86
Query: 932 FARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDS 991
R G Q ++TV ++V F + P+ + V E+L + L++ +
Sbjct: 87 --RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMRLESYANR 141
Query: 992 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN-TG 1050
+ LS Q++R+ +A L P ++ DEP +D + + V+ + + G
Sbjct: 142 F-----PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG 196
Query: 1051 RTIVCTIHQPSIDIFEAFDELILLKTG 1077
T V H + E D +++L G
Sbjct: 197 VTSVFVTHDQE-EALEVADRVLVLHEG 222
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 99/213 (46%), Gaps = 11/213 (5%)
Query: 872 RKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDV--LAGRKTSGYVEGEIKISGYPKVQ 929
R ++ L +V+ + G + ++G SGAGK+TL+ L R T EG + + G
Sbjct: 39 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTT 94
Query: 930 ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIK 989
+ + ++ Q + + + S + L E+++ K E V E + L +
Sbjct: 95 LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG 154
Query: 990 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT 1049
D P + LS Q++R+ IA L +NP ++ D+ T+ LD ++ +K+I
Sbjct: 155 DKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 1050 -GRTIVCTIHQPSIDIFEAFDELILLKTGGRII 1081
G TI+ H+ +D+ + + + + + G +I
Sbjct: 213 LGLTILLITHE--MDVVKRICDCVAVISNGELI 243
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 36/205 (17%)
Query: 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP 243
I LN+VS + G++ ++G G GKST ++ ++ P+ G V +G +L
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQEL----- 92
Query: 244 PKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTY 303
T+ E+ AR Q +G + +S R + ++D
Sbjct: 93 ----------------TTLSESELTKARRQ-IGMIFQHFNLLSSRTVFGNVALPLELDNT 135
Query: 304 MKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKA 363
K VKR + +L ++GL D+ N +SGGQK+R+ + K
Sbjct: 136 PK----DEVKR--RVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKV 184
Query: 364 LFMDEITNGLDSSTAYQIIACIQQL 388
L D+ T+ LD +T I+ ++ +
Sbjct: 185 LLCDQATSALDPATTRSILELLKDI 209
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 14/208 (6%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLA--GRKTSG--YVEGEIKISGYPKVQETF 932
L +V +++ G ++ G SG+GK+T ++++ + T G Y++ IK + + T
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYID-NIKTNDLDDDELTK 79
Query: 933 ARVS--GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKD 990
R G+ Q P +T E+V + + + + + E L+ EL+
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELE---- 135
Query: 991 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI-VNT 1049
N LS Q++R+ IA L NP II DEPT LD++ + + +K +
Sbjct: 136 ERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEED 195
Query: 1050 GRTIVCTIHQPSIDIFEAFDELILLKTG 1077
G+T+V H I++ + +I LK G
Sbjct: 196 GKTVVVVTH--DINVARFGERIIYLKDG 221
Score = 37.4 bits (85), Expect = 0.069, Method: Composition-based stats.
Identities = 58/214 (27%), Positives = 85/214 (39%), Gaps = 35/214 (16%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
YK E I L +V+ +K G + GP G GKST L + G LD + GEV +
Sbjct: 11 YKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNII-GCLDKPTE--GEVYIDN- 66
Query: 237 KLEEFVPPKTSAYISQNDLHIAEMTV--RETVDFSARCQGVGSREETMMEVSRREKEAGI 294
I NDL E+T R+ + F V + + ++ E
Sbjct: 67 -------------IKTNDLDDDELTKIRRDKIGF------VFQQFNLIPLLTALEN---- 103
Query: 295 VPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTG 354
V P I Y A S G +R + LK L + N +SGGQ++R+
Sbjct: 104 VELPLIFKYRGAXS--GEERRKRALECLKXAEL----EERFANHKPNQLSGGQQQRVAIA 157
Query: 355 EMIVGPTKALFMDEITNGLDSSTAYQIIACIQQL 388
+ + DE T LDS T +I +++L
Sbjct: 158 RALANNPPIILADEPTGALDSKTGEKIXQLLKKL 191
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 104/232 (44%), Gaps = 33/232 (14%)
Query: 856 YYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTS 913
++ TPLE + L +V+ + G + G +G+GK+TL+ ++AG TS
Sbjct: 12 FHRGTPLEKKA----------LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 914 GYV--EGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSA---WLRLAPEIN 968
G V +GE K GY +++ Y E V + V F+ + P
Sbjct: 62 GDVLYDGERK-KGY-EIRRNIGIAFQYPEDQFFAE---RVFDEVAFAVKNFYPDRDPVPL 116
Query: 969 SKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1028
K EFV ++ D+ KD +P LS +++R+ IA +V P I+ +DEP
Sbjct: 117 VKKAMEFVG-----LDFDSFKDR---VPFF--LSGGEKRRVAIASVIVHEPDILILDEPL 166
Query: 1029 TGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRI 1080
GLD ++R V+ G+T++ H + D +++L+ G ++
Sbjct: 167 VGLDREGKTDLLRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKV 217
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 103/242 (42%), Gaps = 42/242 (17%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L +VS ++ G L+ G G GKST L+ ++G ++P+ +G+V Y+G +
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDG--------ERK 71
Query: 247 SAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKA 306
Y + ++ IA E F+ R +E V PD D
Sbjct: 72 KGYEIRRNIGIA-FQYPEDQFFAERVF-----DEVAFAVK------NFYPDRD------- 112
Query: 307 ISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFM 366
V VK+ ++ +GLD + + + +SGG+K+R+ +IV L +
Sbjct: 113 -PVPLVKKAME------FVGLDFDS---FKDRVPFFLSGGEKRRVAIASVIVHEPDILIL 162
Query: 367 DEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHG 426
DE GLD ++ +++ + + LIS + D ++++ +GK V+ G
Sbjct: 163 DEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS--HDIETVINHVDRVVVLEKGKKVFDG 220
Query: 427 PQ 428
+
Sbjct: 221 TR 222
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 104/232 (44%), Gaps = 33/232 (14%)
Query: 856 YYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTS 913
++ TPLE + L +V+ + G + G +G+GK+TL+ ++AG TS
Sbjct: 14 FHRGTPLEKK----------ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 63
Query: 914 GYV--EGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSA---WLRLAPEIN 968
G V +GE K GY +++ Y E V + V F+ + P
Sbjct: 64 GDVLYDGERK-KGY-EIRRNIGIAFQYPEDQFFAE---RVFDEVAFAVKNFYPDRDPVPL 118
Query: 969 SKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1028
K EFV ++ D+ KD +P LS +++R+ IA +V P I+ +DEP
Sbjct: 119 VKKAMEFVG-----LDFDSFKDR---VPFF--LSGGEKRRVAIASVIVHEPDILILDEPL 168
Query: 1029 TGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRI 1080
GLD ++R V+ G+T++ H + D +++L+ G ++
Sbjct: 169 VGLDREGKTDLLRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKV 219
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 103/242 (42%), Gaps = 42/242 (17%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L +VS ++ G L+ G G GKST L+ ++G ++P+ +G+V Y+G +
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDG--------ERK 73
Query: 247 SAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKA 306
Y + ++ IA E F+ R +E V PD D
Sbjct: 74 KGYEIRRNIGIA-FQYPEDQFFAERVF-----DEVAFAVK------NFYPDRD------- 114
Query: 307 ISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFM 366
V VK+ ++ +GLD + + + +SGG+K+R+ +IV L +
Sbjct: 115 -PVPLVKKAME------FVGLDFDS---FKDRVPFFLSGGEKRRVAIASVIVHEPDILIL 164
Query: 367 DEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHG 426
DE GLD ++ +++ + + LIS + D ++++ +GK V+ G
Sbjct: 165 DEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS--HDIETVINHVDRVVVLEKGKKVFDG 222
Query: 427 PQ 428
+
Sbjct: 223 TR 224
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 112/251 (44%), Gaps = 46/251 (18%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L+HVS + G+ L+G G GKST + D +G + +G+ + ++
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNL 415
Query: 247 S---AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTY 303
A +SQN +H+ T+ + ++A +G +RE+ +E + R+ A
Sbjct: 416 RRHFALVSQN-VHLFNDTIANNIAYAA--EGEYTREQ--IEQAARQAHA----------- 459
Query: 304 MKAISVKGVKRTLQTDYILKI-LGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTK 362
++I + GLD T++G +SGGQ++R+ ++
Sbjct: 460 --------------MEFIENMPQGLD----TVIGEN-GTSLSGGQRQRVAIARALLRDAP 500
Query: 363 ALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKI 422
L +DE T+ LD+ + I A + +L + T L+ + T + D+I+++ EG+I
Sbjct: 501 VLILDEATSALDTESERAIQAALDELQK--NKTVLV--IAHRLSTIEQADEILVVDEGEI 556
Query: 423 VYHGPQDHVLA 433
+ G +LA
Sbjct: 557 IERGRHADLLA 567
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 98/209 (46%), Gaps = 21/209 (10%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP-------KVQ 929
L V+ S+ G AL+G SG+GK+T+ ++ + G I + G+ ++
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFT--RFYDVDSGSICLDGHDVRDYKLTNLR 416
Query: 930 ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPE-INSKTKAEFVNEVLETIELDAI 988
FA VS ++H N T+ ++ ++A E I + E +E +
Sbjct: 417 RHFALVS-----QNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGL- 470
Query: 989 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN 1048
D+++G G + LS QR+R+ IA L+ + ++ +DE T+ LD + + A+ +
Sbjct: 471 -DTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDEL-Q 527
Query: 1049 TGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
+T++ H+ S E DE++++ G
Sbjct: 528 KNKTVLVIAHRLS--TIEQADEILVVDEG 554
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
Length = 538
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 28/198 (14%)
Query: 881 TGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTS--GYVEGEIKISGYPKVQETFARVSGY 938
G + G + ++G +G GKTT +L G T+ G V E +I Y K Q F G
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFPNYDGT 346
Query: 939 CEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGV 998
+Q +L A + T + F EV + + L + +S V
Sbjct: 347 VQQ------------------YLENASKDALSTSSWFFEEVTKRLNLHRLLES-----NV 383
Query: 999 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTI- 1057
N LS + ++L IA L + +D+P++ LD IV +A+K + + + I
Sbjct: 384 NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID 443
Query: 1058 HQPSIDIFEAFDELILLK 1075
H SI + A D +I+ K
Sbjct: 444 HDLSIHDYIA-DRIIVFK 460
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 16/179 (8%)
Query: 885 RPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDI 944
+ + ++G +G GKTT++ +LAG + + K+ G +V + F Y ++
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV-GKDEVLKRFRGKEIYNYFKEL 81
Query: 945 HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI--------P 996
+S + + + + + SK VNE+L I+ KD + +
Sbjct: 82 YSNELKIVHKIQYVEYA-------SKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNK 134
Query: 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVC 1055
N LS +RL +A L+ + D+P++ LD R + +A++ ++ IV
Sbjct: 135 DANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 191 SGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSL-KVTGEVSYNGYKLEEFVP 243
+G K G + +LGP G GK+TF + L G + VT E YK + P
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFP 341
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 39/242 (16%)
Query: 849 VAFQDLKY-YVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVL 907
V FQD+ + Y + P +++L +T +L PG +TAL+G +G+GK+T+ +L
Sbjct: 17 VKFQDVSFAYPNHP-----------NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
Query: 908 AG-RKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITV-EESVIFSAWLR--L 963
+ +G G++ + G P VQ + +H+ V +E ++F R +
Sbjct: 66 QNLYQPTG---GKVLLDGEPLVQ---------YDHHYLHTQVAAVGQEPLLFGRSFRENI 113
Query: 964 APEIN-SKTKAEFVNEVLETIELDAIK------DSLVGIPGVNGLSTEQRKRLTIAVELV 1016
A + + T E +E+ D I D+ VG G N LS QR+ + +A L+
Sbjct: 114 AYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETG-NQLSGGQRQAVALARALI 172
Query: 1017 ANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLK 1075
P ++ +D+ T+ LDA V R + RT++ HQ + + E ++ LK
Sbjct: 173 RKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQ--LSLAERAHHILFLK 230
Query: 1076 TG 1077
G
Sbjct: 231 EG 232
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 44/204 (21%)
Query: 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS---LKVTGE--VSYNGYK 237
+ +L ++ L PG++T L+GP G GKST L P+ + + GE V Y+ +
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHY 90
Query: 238 LEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPD 297
L V A + Q L + RE + + +R TM E++ E+G
Sbjct: 91 LHTQV-----AAVGQEPLLFGR-SFRENIAYGL------TRTPTMEEITAVAMESGA--- 135
Query: 298 PDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMI 357
D+ I G DT VG + +SGGQ++ + +
Sbjct: 136 --------------------HDF---ISGFPQGYDTEVGETGNQ-LSGGQRQAVALARAL 171
Query: 358 VGPTKALFMDEITNGLDSSTAYQI 381
+ + L +D+ T+ LD+ ++
Sbjct: 172 IRKPRLLILDQATSALDAGNQLRV 195
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 101/218 (46%), Gaps = 25/218 (11%)
Query: 869 FADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928
+AD + L DV+ ++ PG AL+G SGAGK+T++ +L + G I+I G
Sbjct: 63 YADGR-ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF--RFYDISSGCIRIDGQDIS 119
Query: 929 QETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI 988
Q T A + + + +++V+F+ +A I +EV + I
Sbjct: 120 QVTQASLRSHI--------GVVPQDTVLFNDT--IADNIRYGRVTAGNDEVEAAAQAAGI 169
Query: 989 KDSLVGIP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIV 1039
D+++ P G G LS +++R+ IA ++ P II +DE T+ LD +
Sbjct: 170 HDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI 229
Query: 1040 MRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
++ + RT + H+ S + D+++++K G
Sbjct: 230 QASLAKVC-ANRTTIVVAHRLSTVV--NADQILVIKDG 264
Score = 37.4 bits (85), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 49/252 (19%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L VS + PG+ L+GP G GKST L+ L D S +G + +G + +
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASL 126
Query: 247 SAYIS--QNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDI---D 301
++I D + T+ + + + G EV + AGI D + +
Sbjct: 127 RSHIGVVPQDTVLFNDTIADNIRYGRVTAGND-------EVEAAAQAAGI-HDAIMAFPE 178
Query: 302 TYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPT 361
Y + +G+K +SGG+K+R+ I+
Sbjct: 179 GYRTQVGERGLK-----------------------------LSGGEKQRVAIARTILKAP 209
Query: 362 KALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421
+ +DE T+ LD+S I A + ++ + + L T D I+++ +G
Sbjct: 210 GIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRL----STVVNADQILVIKDGC 265
Query: 422 IVYHGPQDHVLA 433
IV G + +L+
Sbjct: 266 IVERGRHEALLS 277
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 93/196 (47%), Gaps = 23/196 (11%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARV 935
+L V S++PG L A++G +G+GK+TLM+++ ++ E G +V E R
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLI-----PRLIDPE---RGRVEVDELDVRT 409
Query: 936 SGYCEQTDIHSPNITV-EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVG 994
+ D+ V +E+V+FS ++ + + + +E++E ++ I D ++
Sbjct: 410 ---VKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATD--DEIVEAAKIAQIHDFIIS 464
Query: 995 IP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 1045
+P G S Q++RL+IA LV P ++ +D+ T+ +D ++ +K
Sbjct: 465 LPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKR 524
Query: 1046 IVNTGRTIVCTIHQPS 1061
T + T P+
Sbjct: 525 YTKGCTTFIITQKIPT 540
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 107/262 (40%), Gaps = 42/262 (16%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
++ E +L+ V+ +KPG + +LG G GKST + + +DP G V +
Sbjct: 349 FRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDEL 405
Query: 237 KLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVP 296
+ +IS +ETV FS T+ E + +E
Sbjct: 406 DVRTVKLKDLRGHISA--------VPQETVLFSG----------TIKENLKWGRE----- 442
Query: 297 DPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEM 356
D D ++A + + D+I+ L D+ V R SGGQK+RL+
Sbjct: 443 DATDDEIVEAAKIAQIH-----DFIIS---LPEGYDSRVERG-GRNFSGGQKQRLSIARA 493
Query: 357 IVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIIL 416
+V K L +D+ T+ +D T +I+ +++ T + Q P L D I++
Sbjct: 494 LVKKPKVLILDDCTSSVDPITEKRILDGLKRY---TKGCTTFIITQKIPTAL-LADKILV 549
Query: 417 MAEGKIVYHGPQDHVLAFFEDC 438
+ EGK+ G +L E C
Sbjct: 550 LHEGKVAGFGTHKELL---EHC 568
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 61/256 (23%), Positives = 99/256 (38%), Gaps = 54/256 (21%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-- 243
++N VS + G M ++GP G GKST L+ L+G L PS GE G L + P
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKA 82
Query: 244 -PKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDT 302
+T A + Q +V E + G + + +V + +
Sbjct: 83 LARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALA------- 135
Query: 303 YMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIV---- 358
Q DY R +SGG+++R+ ++
Sbjct: 136 --------------QRDY--------------------RVLSGGEQQRVQLARVLAQLWQ 161
Query: 359 -GPT-KALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIIL 416
PT + LF+DE T+ LD + ++QL + A+ +L D I+L
Sbjct: 162 PQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR-QEPLAVCCVLHDLNLAALYADRIML 220
Query: 417 MAEGKIVYHGPQDHVL 432
+A+GK+V G + VL
Sbjct: 221 LAQGKLVACGTPEEVL 236
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 53/220 (24%), Positives = 97/220 (44%), Gaps = 26/220 (11%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVE----GEIKISGYPKVQET 931
L+ DV+ + G + A++G +GAGK+TL+ +L G + + E G+ S PK
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPK---A 82
Query: 932 FARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-AIKD 990
AR Q + +V E + + AP S+ + + +T L A +D
Sbjct: 83 LARTRAVMRQYSELAFPFSVSEVI----QMGRAPYGGSQDRQALQQVMAQTDCLALAQRD 138
Query: 991 SLVGIPGVNGLSTEQRKRLTIAVELVA------NPSIIFMDEPTTGLDARAAAIVMRAVK 1044
V LS +++R+ +A L P +F+DEPT+ LD +R ++
Sbjct: 139 YRV-------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLR 191
Query: 1045 NIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
+ VC + +++ + + I+L G+++ CG
Sbjct: 192 QLTRQEPLAVCCVLH-DLNLAALYADRIMLLAQGKLVACG 230
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 103/246 (41%), Gaps = 47/246 (19%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L+++S ++ G ++LGP G GK+ FL+ ++G P +G + +G + + P K
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72
Query: 247 S-AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
A++ QN M V++ ++F R + + DP
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKK--------------------IKDP------- 105
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALF 365
KR L T LKI L + N + +SGG+++R+ +V K L
Sbjct: 106 -------KRVLDTARDLKIEHL------LDRNPL--TLSGGEQQRVALARALVTNPKILL 150
Query: 366 MDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYH 425
+DE + LD T + ++H + ++ + E + D I ++ +GK++
Sbjct: 151 LDEPLSALDPRTQENAREML-SVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209
Query: 426 GPQDHV 431
G + +
Sbjct: 210 GKPEEI 215
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 20/147 (13%)
Query: 892 LMGVSGAGKTTLMDVLAGRKT--SGYV--EGEIKISGYPKVQETFARVSGYCEQTDIHSP 947
++G +GAGKT ++++AG SG + +G+ P+ + + Q P
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI-----AFVYQNYSLFP 85
Query: 948 NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRK 1007
++ V++++ F ++ K + VL+T I+ L P LS +++
Sbjct: 86 HMNVKKNLEFGMRMK---------KIKDPKRVLDTARDLKIEHLLDRNPLT--LSGGEQQ 134
Query: 1008 RLTIAVELVANPSIIFMDEPTTGLDAR 1034
R+ +A LV NP I+ +DEP + LD R
Sbjct: 135 RVALARALVTNPKILLLDEPLSALDPR 161
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 50.4 bits (119), Expect = 8e-06, Method: Composition-based stats.
Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 49/202 (24%)
Query: 194 LKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE-----FVPPKTS- 247
+K G +LLGP GCGK+T L+ ++G +P+ G++ + + FVPPK
Sbjct: 29 IKDGEFLVLLGPSGCGKTTTLRXIAGLEEPT---RGQIYIEDNLVADPEKGVFVPPKERD 85
Query: 248 -AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKA 306
A + Q+ TV + + F + + V P +ID ++
Sbjct: 86 VAXVFQSYALYPHXTVYDNIAFPLKLRKV--------------------PKQEIDKRVRE 125
Query: 307 ISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFM 366
++ + LGL T + N R +SGGQ++R+ G I+ K
Sbjct: 126 VA--------------EXLGL-----TELLNRKPRELSGGQRQRVALGRAIIRRPKVFLX 166
Query: 367 DEITNGLDSSTAYQIIACIQQL 388
DE + LD+ + A +++L
Sbjct: 167 DEPLSNLDAKLRVKXRAELKKL 188
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 15/162 (9%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFA--- 933
D++ ++ G L+G SG GKTT + +AG T G + E + P+ + F
Sbjct: 24 DLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPE-KGVFVPPK 82
Query: 934 -RVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSL 992
R Q+ P+ TV +++ F LR P K E V E E + + L
Sbjct: 83 ERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVP------KQEIDKRVREVAEXLGLTELL 136
Query: 993 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034
P LS QR+R+ + ++ P + DEP + LDA+
Sbjct: 137 NRKP--RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 21/195 (10%)
Query: 884 LRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFARVSGYCEQ 941
L G + A++G +G GK+TL+D+L G R G +E I P+ F+ Y
Sbjct: 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQF---FSSPFAY--- 81
Query: 942 TDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGL 1001
SV+ + + IN+ K + + + LD + + + L
Sbjct: 82 ------------SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSL 129
Query: 1002 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQP 1060
S QR+ + IA + + +I +DEPT+ LD IV+ + ++ + T+V T HQP
Sbjct: 130 SGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP 189
Query: 1061 SIDIFEAFDELILLK 1075
+ + A L+L K
Sbjct: 190 NQVVAIANKTLLLNK 204
Score = 37.0 bits (84), Expect = 0.075, Method: Composition-based stats.
Identities = 49/210 (23%), Positives = 78/210 (37%), Gaps = 48/210 (22%)
Query: 194 LKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQN 253
L G + +LG GCGKST L L G P + G++ Y+ FVP S+ + +
Sbjct: 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHRP---IQGKIEV--YQSIGFVPQFFSSPFAYS 82
Query: 254 DLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVK 313
L I M R T I+T+ K S
Sbjct: 83 VLDIVLMG-RST---------------------------------HINTFAKPKS----- 103
Query: 314 RTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGL 373
DY + + LD T + +SGGQ++ + I K + +DE T+ L
Sbjct: 104 ----HDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSAL 159
Query: 374 DSSTAYQIIACIQQLVHITDSTALISLLQP 403
D + +++ + L + T + + QP
Sbjct: 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQP 189
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 110/242 (45%), Gaps = 39/242 (16%)
Query: 849 VAFQDLKY-YVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVL 907
V FQD+ + Y + P +++L +T +L PG +TAL+G +G+GK+T+ +L
Sbjct: 17 VKFQDVSFAYPNHP-----------NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
Query: 908 AG-RKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITV-EESVIFSAWLR--L 963
+ +G G++ + G P VQ + +H+ V +E ++F R +
Sbjct: 66 QNLYQPTG---GKVLLDGEPLVQ---------YDHHYLHTQVAAVGQEPLLFGRSFRENI 113
Query: 964 APEIN-SKTKAEFVNEVLETIELDAIK------DSLVGIPGVNGLSTEQRKRLTIAVELV 1016
A + + T E +E+ D I D+ VG G N LS QR+ + +A L+
Sbjct: 114 AYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETG-NQLSGGQRQAVALARALI 172
Query: 1017 ANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLK 1075
P ++ +D T+ LDA V R + RT++ Q + + E ++ LK
Sbjct: 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ--LSLAERAHHILFLK 230
Query: 1076 TG 1077
G
Sbjct: 231 EG 232
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 82/204 (40%), Gaps = 44/204 (21%)
Query: 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS---LKVTGE--VSYNGYK 237
+ +L ++ L PG++T L+GP G GKST L P+ + + GE V Y+ +
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHY 90
Query: 238 LEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPD 297
L V A + Q L + RE + + +R TM E++ E+G
Sbjct: 91 LHTQV-----AAVGQEPLLFGR-SFRENIAYGL------TRTPTMEEITAVAMESGA--- 135
Query: 298 PDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMI 357
D+ I G DT VG + +SGGQ++ + +
Sbjct: 136 --------------------HDF---ISGFPQGYDTEVGETGNQ-LSGGQRQAVALARAL 171
Query: 358 VGPTKALFMDEITNGLDSSTAYQI 381
+ + L +D T+ LD+ ++
Sbjct: 172 IRKPRLLILDNATSALDAGNQLRV 195
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 1001 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQ 1059
LS Q++R++IA L P ++ DEPT+ LD V+R ++ + G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
Score = 35.4 bits (80), Expect = 0.25, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 10/116 (8%)
Query: 343 ISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQ 402
+SGGQ++R++ + L DE T+ LD +++ +QQL + ++ +
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTH 211
Query: 403 PAPETFDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSR 458
+ +I + +GKI G + V F P+ + FL+ L +
Sbjct: 212 EMGFARHVSSHVIFLHQGKIEEEGDPEQV--------FGNPQSPRLQQFLKGSLKK 259
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 17/165 (10%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETF--- 932
+L D++ SL PG + ++G SG GKTTL+ LAG + GEI +SG +
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLP 76
Query: 933 --ARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLET-IELDAIK 989
R GY Q + P++TV ++ + N K + + +E +EL I
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLG-------NGKGRTAQERQRIEAMLELTGIS 129
Query: 990 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034
+ P + LS Q++R +A L +P +I +DEP + LD +
Sbjct: 130 ELAGRYP--HELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNG---YKLEEFV 242
+LN +S L PG + ++G GCGK+T L+ L+G P +GE+S +G + +
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNL 75
Query: 243 PPKTS--AYISQNDLHIAEMTVRETVDF-----SARCQGVGSREETMMEVSRREKEAGIV 295
P + Y+ Q + +TV + + R R E M+E++ + AG
Sbjct: 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRY 135
Query: 296 P 296
P
Sbjct: 136 P 136
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 111/259 (42%), Gaps = 32/259 (12%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP---KVQETF 932
+L +++ S+ PG L+G +G+GK+TL+ + EGEI+I G E +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT---EGEIQIDGVSWDSITLEQW 92
Query: 933 ARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSL 992
+ G Q + IFS R + N+ + + +V + + L ++ +
Sbjct: 93 RKAFGVIPQ-----------KVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQF 141
Query: 993 VG------IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI 1046
G + G LS ++ + +A +++ I+ +DEP+ LD I+ R +K
Sbjct: 142 PGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA 201
Query: 1047 VNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQVIEYFEGISGVPKI 1106
I+C + I+ D+ ++++ Y L + + G G PK+
Sbjct: 202 FADCTVILC---EARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPKM 258
Query: 1107 RNNYNPATWVIEVTSTSAE 1125
N+ P ++VT+T+ +
Sbjct: 259 --NFLP----VKVTATAID 271
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 108/268 (40%), Gaps = 53/268 (19%)
Query: 178 KSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSG--NLDPSLKVTGEVSYNG 235
K E IL ++S + PG+ LLG G GKST L A N + +++ G VS++
Sbjct: 28 KYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDG-VSWDS 86
Query: 236 YKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIV 295
LE++ K I Q + I T R+ +D +A + E+ + E G
Sbjct: 87 ITLEQW--RKAFGVIPQK-VFIFSGTFRKNLDPNA--------AHSDQEIWKVADEVG-- 133
Query: 296 PDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGE 355
+ + ++ K D++L G C +S G K+ +
Sbjct: 134 ----LRSVIEQFPGK-------LDFVLVDGG---CV-----------LSHGHKQLMCLAR 168
Query: 356 MIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415
++ K L +DE + LD T YQI I++ + + + L + E D +
Sbjct: 169 SVLSKAKILLLDEPSAHLDPVT-YQI---IRRTLKQAFADCTVILCEARIEAMLECDQFL 224
Query: 416 LMAEGKI--------VYHGPQDHVLAFF 435
++ E K+ +YH P D +A F
Sbjct: 225 VIEENKVRQYDSILELYHYPADRFVAGF 252
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 110/242 (45%), Gaps = 39/242 (16%)
Query: 849 VAFQDLKY-YVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVL 907
V FQD+ + Y + P +++L +T +L PG +TAL+G +G+GK+T+ +L
Sbjct: 17 VKFQDVSFAYPNHP-----------NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
Query: 908 AG-RKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITV-EESVIFSAWLR--L 963
+ +G G++ + G P VQ + +H+ V +E ++F R +
Sbjct: 66 QNLYQPTG---GKVLLDGEPLVQ---------YDHHYLHTQVAAVGQEPLLFGRSFRENI 113
Query: 964 APEIN-SKTKAEFVNEVLETIELDAIK------DSLVGIPGVNGLSTEQRKRLTIAVELV 1016
A + + T E +E+ D I D+ VG G N L+ QR+ + +A L+
Sbjct: 114 AYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETG-NQLAVGQRQAVALARALI 172
Query: 1017 ANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLK 1075
P ++ +D T+ LDA V R + RT++ Q + + E ++ LK
Sbjct: 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ--LSLAERAHHILFLK 230
Query: 1076 TG 1077
G
Sbjct: 231 EG 232
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 81/204 (39%), Gaps = 44/204 (21%)
Query: 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS---LKVTGE--VSYNGYK 237
+ +L ++ L PG++T L+GP G GKST L P+ + + GE V Y+ +
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHY 90
Query: 238 LEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPD 297
L V A + Q L + RE + + +R TM E++ E+G
Sbjct: 91 LHTQV-----AAVGQEPLLFGR-SFRENIAYGL------TRTPTMEEITAVAMESGA--- 135
Query: 298 PDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMI 357
D+ I G DT VG + ++ GQ++ + +
Sbjct: 136 --------------------HDF---ISGFPQGYDTEVGETGNQ-LAVGQRQAVALARAL 171
Query: 358 VGPTKALFMDEITNGLDSSTAYQI 381
+ + L +D T+ LD+ ++
Sbjct: 172 IRKPRLLILDNATSALDAGNQLRV 195
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 23/209 (11%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARV 935
+L D+ + G L A+ G +GAGKT+L+ ++ G EG+IK SG R+
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 83
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI 995
S +C Q P T++E++IF S KA ++ E I A KD++V
Sbjct: 84 S-FCSQFSWIMPG-TIKENIIFGVSYD-EYRYRSVIKA---CQLEEDISKFAEKDNIVLG 137
Query: 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNIVNTGRTI 1053
G LS QR R+++A + + + +D P LD + + K + N R +
Sbjct: 138 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 197
Query: 1054 VCTIHQPSIDIFEAFDELILLKTGGRIIY 1082
V + ++ + D++++L G Y
Sbjct: 198 VTS----KMEHLKKADKILILHEGSSYFY 222
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 85/185 (45%), Gaps = 14/185 (7%)
Query: 884 LRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYV------EGEIKISGYPKVQETFARVSG 937
++ G + ++G +G GK+T + +LAG+ +G I+ ++Q F ++
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 938 YCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPG 997
+ + + + + + L + + K E EV++ +EL+ + + +
Sbjct: 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLE---EVVKALELENVLEREI---- 156
Query: 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTI 1057
LS + +R+ IA L+ N + F DEP++ LD R RA++ + G++++
Sbjct: 157 -QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215
Query: 1058 HQPSI 1062
H ++
Sbjct: 216 HDLAV 220
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 85/198 (42%), Gaps = 32/198 (16%)
Query: 882 GSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPK-VQETFARVSGY 938
G ++ G + ++G +G GKTT + LAG T G +E ++ ++ P+ ++ +
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQYIKADY------ 360
Query: 939 CEQTDIHSPNITVEESVIFSAWLRL-APEINSKTKAEFVNEVLETIELDAIKDSLVGIPG 997
E ++ ++ A ++NS + E+L+ + + + D V
Sbjct: 361 --------------EGTVYELLSKIDASKLNSNF---YKTELLKPLGIIDLYDREV---- 399
Query: 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTI 1057
N LS + +R+ IA L+ + I +DEP+ LD V RA++++ +
Sbjct: 400 -NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVV 458
Query: 1058 HQPSIDIFEAFDELILLK 1075
+ I D L + +
Sbjct: 459 EHDVLXIDYVSDRLXVFE 476
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 193 ILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSL 225
++K G + ++GP G GKST +K L+G L P+L
Sbjct: 43 VVKEGXVVGIVGPNGTGKSTAVKILAGQLIPNL 75
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 192 GILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS 224
G +K G + ++GP G GK+TF+K L+G +P+
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPT 339
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 23/209 (11%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARV 935
+L D+ + G L A+ G +GAGKT+L+ ++ G EG+IK SG R+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 71
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI 995
S +C Q P T++E++IF S KA ++ E I A KD++V
Sbjct: 72 S-FCSQFSWIMPG-TIKENIIFGVSYD-EYRYRSVIKA---CQLEEDISKFAEKDNIVLG 125
Query: 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNIVNTGRTI 1053
G LS QR R+++A + + + +D P LD + + K + N R +
Sbjct: 126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 185
Query: 1054 VCTIHQPSIDIFEAFDELILLKTGGRIIY 1082
V + ++ + D++++L G Y
Sbjct: 186 VTS----KMEHLKKADKILILHEGSSYFY 210
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
Length = 267
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 92/209 (44%), Gaps = 10/209 (4%)
Query: 883 SLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSG----Y 938
+ PG + A+MG +G+GK+TL LAGR+ G ++ G + + +G
Sbjct: 42 DVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFM 101
Query: 939 CEQTDIHSPNITVE---ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI 995
Q + P ++ + ++ + + E + + +F + + E I L + + L+
Sbjct: 102 AFQYPVEIPGVSNQFFLQTALNAVRSYRGQE--TLDRFDFQDLMEEKIALLKMPEDLLTR 159
Query: 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVC 1055
G S ++KR I V P + +DE +GLD A +V V ++ + R+ +
Sbjct: 160 SVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFII 219
Query: 1056 TIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
H I + D + +L GRI+ G
Sbjct: 220 VTHYQRILDYIKPDYVHVLYQ-GRIVKSG 247
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 179 SLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKL 238
S+E K IL +S + PG + ++GP G GKST L+G D + G V + G L
Sbjct: 29 SVEDKA-ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDL 86
Query: 239 EEFVPPKTSA 248
P +
Sbjct: 87 LALSPEDRAG 96
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 30/214 (14%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVS 936
L +T S+ G L A++G G GK++L+ L VEG + I G V+
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVAIKG---------SVA 69
Query: 937 GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIP 996
+Q I N ++ E+++F L P S +A + LE L + + +G
Sbjct: 70 YVPQQAWIQ--NDSLRENILFGCQLE-EPYYRSVIQACALLPDLEI--LPSGDRTEIGEK 124
Query: 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAV---KNIVNTGRTI 1053
GVN LS Q++R+++A + +N I D+P + +DA + V K ++ I
Sbjct: 125 GVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRI 183
Query: 1054 VCT---IHQPSIDIFEAFDELILLKTGGRIIYCG 1084
+ T + P +D+ I++ +GG+I G
Sbjct: 184 LVTHSMSYLPQVDV-------IIVMSGGKISEMG 210
Score = 37.0 bits (84), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 96/247 (38%), Gaps = 50/247 (20%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
LN ++ + G + ++G GCGKS+ L AL +D KV G V+ G +VP +
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKGSV--AYVPQQ- 74
Query: 247 SAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKA 306
A+I QND ++RE + F CQ ++++ + I+P D
Sbjct: 75 -AWI-QND------SLRENILFG--CQLEEPYYRSVIQACALLPDLEILPSGD----RTE 120
Query: 307 ISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFM 366
I KGV +SGGQK+R++ +
Sbjct: 121 IGEKGVN-----------------------------LSGGQKQRVSLARAVYSNADIYLF 151
Query: 367 DEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHG 426
D+ + +D+ I + + + I L+ + D II+M+ GKI G
Sbjct: 152 DDPLSAVDAHVGKHIFENVIGPKGMLKNKTRI-LVTHSMSYLPQVDVIIVMSGGKISEMG 210
Query: 427 PQDHVLA 433
+LA
Sbjct: 211 SYQELLA 217
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 8/208 (3%)
Query: 883 SLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSG----Y 938
+ PG + A+MG +G+GK+TL LAGR+ G ++ G + + +G
Sbjct: 23 DVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFM 82
Query: 939 CEQTDIHSPNITVEESVIFSAWLRLAPEINSKT--KAEFVNEVLETIELDAIKDSLVGIP 996
Q + P ++ + + +A + +T + +F + + E I L + + L+
Sbjct: 83 AFQYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRS 141
Query: 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCT 1056
G S ++KR I V P + +DE +GLD A +V V ++ + R+ +
Sbjct: 142 VNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIV 201
Query: 1057 IHQPSIDIFEAFDELILLKTGGRIIYCG 1084
H I + D + +L GRI+ G
Sbjct: 202 THYQRILDYIKPDYVHVLYQ-GRIVKSG 228
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 179 SLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKL 238
S+E K IL +S + PG + ++GP G GKST L+G D + G V + G L
Sbjct: 10 SVEDKA-ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDL 67
Query: 239 EEFVPPKTSA 248
P +
Sbjct: 68 LALSPEDRAG 77
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 24/209 (11%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARV 935
+L D+ + G L A+ G +GAGKT+L+ ++ G EG+IK SG R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI 995
S +C Q P T++E++I ++ S KA ++ E I A KD++V
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSYDEY--RYRSVIKA---CQLEEDISKFAEKDNIVLG 154
Query: 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNIVNTGRTI 1053
G LS QR R+++A + + + +D P LD + + K + N R +
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 1054 VCTIHQPSIDIFEAFDELILLKTGGRIIY 1082
V + ++ + D++++L G Y
Sbjct: 215 VTS----KMEHLKKADKILILHEGSSYFY 239
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 102/259 (39%), Gaps = 53/259 (20%)
Query: 844 FEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDV--------TGSLRPGVLTALMGV 895
F P + F L VD ER RL+ D G +R G + ++G
Sbjct: 336 FRPYEIRFTKLSERVDV-----ERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGP 390
Query: 896 SGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVE- 952
+G GKTT + +LAG T G VE ++ ++ P+ I E
Sbjct: 391 NGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQY--------------------IKAEY 430
Query: 953 ESVIFSAWLRLAPEINSKTKAEFVN-EVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTI 1011
E ++ ++ +SK + F E+L+ + + + D V LS + +R+ I
Sbjct: 431 EGTVYELLSKID---SSKLNSNFYKTELLKPLGIIDLYDR-----NVEDLSGGELQRVAI 482
Query: 1012 AVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDEL 1071
A L+ + I +DEP+ LD V RA+++++ + + I D L
Sbjct: 483 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 542
Query: 1072 ILLKTGGRIIYCGPLGKHS 1090
I++ G G+H
Sbjct: 543 --------IVFEGEPGRHG 553
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 98/227 (43%), Gaps = 24/227 (10%)
Query: 884 LRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGE------IKISGYPKVQETFARVSG 937
++ G++ ++G +G GKTT + +LAG+ E I+ ++Q F R+
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL-- 171
Query: 938 YCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSL----V 993
+ +I V+ ++ L P+ E + +V E + + + L V
Sbjct: 172 --KNGEIRP--------VVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENV 221
Query: 994 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTI 1053
++ LS + +R+ IA L+ F DEP++ LD R V R ++ + N G+ +
Sbjct: 222 LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAV 281
Query: 1054 VCTIHQPSI-DIFEAFDELILLKTGGRIIYCGPLGKHSSQVIEYFEG 1099
+ H ++ D ++ + G I+ P G + + E+ +G
Sbjct: 282 LVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNG-INEFLQG 327
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 193 ILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSL 225
I+K G + ++GP G GK+T +K L+G L P+L
Sbjct: 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL 145
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 192 GILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS 224
G ++ G + ++GP G GK+TF+K L+G +P+
Sbjct: 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT 409
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 24/209 (11%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARV 935
+L D+ + G L A+ G +GAGKT+L+ ++ G EG+IK SG R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI 995
S +C Q P T++E++I ++ S KA ++ E I A KD++V
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSYDEY--RYRSVIKA---CQLEEDISKFAEKDNIVLG 154
Query: 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNIVNTGRTI 1053
G LS QR R+++A + + + +D P LD + + K + N R +
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 1054 VCTIHQPSIDIFEAFDELILLKTGGRIIY 1082
V + ++ + D++++L G Y
Sbjct: 215 VTS----KMEHLKKADKILILHEGSSYFY 239
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 88/212 (41%), Gaps = 38/212 (17%)
Query: 882 GSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFARVSGYC 939
G +R G + ++G +G GKTT + +LAG T G VE ++ ++ P Q A G
Sbjct: 363 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG-- 418
Query: 940 EQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVN-EVLETIELDAIKDSLVGIPGV 998
+ + L+ +SK + F E+L+ + + + D V
Sbjct: 419 ------------------TVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDR-----NV 455
Query: 999 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIH 1058
LS + +R+ IA L+ + I +DEP+ LD V RA+++++ +
Sbjct: 456 EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 515
Query: 1059 QPSIDIFEAFDELILLKTGGRIIYCGPLGKHS 1090
+ I D L I++ G G+H
Sbjct: 516 HDVLMIDYVSDRL--------IVFEGEPGRHG 539
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 98/227 (43%), Gaps = 24/227 (10%)
Query: 884 LRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGE------IKISGYPKVQETFARVSG 937
++ G++ ++G +G GKTT + +LAG+ E I+ ++Q F R+
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL-- 157
Query: 938 YCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSL----V 993
+ +I V+ ++ L P+ E + +V E + + + L V
Sbjct: 158 --KNGEIRP--------VVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENV 207
Query: 994 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTI 1053
++ LS + +R+ IA L+ F DEP++ LD R V R ++ + N G+ +
Sbjct: 208 LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAV 267
Query: 1054 VCTIHQPSI-DIFEAFDELILLKTGGRIIYCGPLGKHSSQVIEYFEG 1099
+ H ++ D ++ + G I+ P G + + E+ +G
Sbjct: 268 LVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNG-INEFLQG 313
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 193 ILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSL 225
I+K G + ++GP G GK+T +K L+G L P+L
Sbjct: 99 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL 131
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 192 GILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS 224
G ++ G + ++GP G GK+TF+K L+G +P+
Sbjct: 363 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT 395
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 29/229 (12%)
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKISGYPK- 927
+ + L V+ S+ G +T ++G +G+GK+TL++V+ G + G Y E + + P
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 928 -----VQETFARVSGYCEQTDIHS-------PNITVEESVIFSAWLRLAPEINSKTKAEF 975
+ TF E T + + P + S+ + W+ E+ K
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKA---- 134
Query: 976 VNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARA 1035
++LE ++L + D G LS Q K + I L+ NP +I MDEP G+
Sbjct: 135 -FKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188
Query: 1036 AAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
A + V + G T + H+ +DI + + + + G+II G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEG 235
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 76/206 (36%), Gaps = 33/206 (16%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L+ VS + G +TL++GP G GKST + ++G L G V + + P +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAEL 79
Query: 247 SAY----ISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDT 302
Y Q + EMTV E + C G P
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPG---------------------ESPLNSL 118
Query: 303 YMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTK 362
+ K K + + IL+ L L D G +SGGQ K + G ++ K
Sbjct: 119 FYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPK 173
Query: 363 ALFMDEITNGLDSSTAYQIIACIQQL 388
+ MDE G+ A+ I + +L
Sbjct: 174 MIVMDEPIAGVAPGLAHDIFNHVLEL 199
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 17/150 (11%)
Query: 892 LMGVSGAGKTTLMDVLAGRK--TSGYVEGEIKISGYPKV---QETFARVSGYCEQTDIH- 945
L G++GAGKTTL+++L + TSG V K G KV ET + G+ + +
Sbjct: 52 LYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPG--KVGYSAETVRQHIGFVSHSLLEK 109
Query: 946 -SPNITVEESVIFSAWLRLA--PEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLS 1002
V + VI A+ + +I+ + + E +++L+ + A +G LS
Sbjct: 110 FQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLKLVGXSAKAQQYIGY-----LS 163
Query: 1003 TEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
T +++R+ IA L P ++ +DEP GLD
Sbjct: 164 TGEKQRVXIARALXGQPQVLILDEPAAGLD 193
Score = 35.8 bits (81), Expect = 0.19, Method: Composition-based stats.
Identities = 56/250 (22%), Positives = 105/250 (42%), Gaps = 37/250 (14%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
IL +S + G +L G G GK+T L L+ +P+ +G V+ G P
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNA-YEPA--TSGTVNLFGKX------PG 86
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
Y ++ TVR+ + F + +++E + +E V D I K
Sbjct: 87 KVGYSAE--------TVRQHIGFVS---------HSLLE---KFQEGERVIDVVISGAFK 126
Query: 306 AISV-KGVKRTLQTD--YILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTK 362
+I V + + ++ + +LK++G A +G +S G+K+R+ + G +
Sbjct: 127 SIGVYQDIDDEIRNEAHQLLKLVGXSAKAQQYIGY-----LSTGEKQRVXIARALXGQPQ 181
Query: 363 ALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKI 422
L +DE GLD +++ + L + A I + E F I+L+ +G+
Sbjct: 182 VLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQS 241
Query: 423 VYHGPQDHVL 432
+ G + +L
Sbjct: 242 IQQGAVEDIL 251
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 24/209 (11%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARV 935
+L D+ + G L A+ G +GAGKT+L+ ++ G EG+IK SG R+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 71
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI 995
S +C Q P T++E++I ++ S KA ++ E I A KD++V
Sbjct: 72 S-FCSQFSWIMPG-TIKENIIGVSYDEY--RYRSVIKA---CQLEEDISKFAEKDNIVLG 124
Query: 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNIVNTGRTI 1053
G LS QR R+++A + + + +D P LD + + K + N R +
Sbjct: 125 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 184
Query: 1054 VCTIHQPSIDIFEAFDELILLKTGGRIIY 1082
V + ++ + D++++L G Y
Sbjct: 185 VTS----KMEHLKKADKILILHEGSSYFY 209
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette
From An Abc Transporter
Length = 257
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 29/229 (12%)
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKISGYPK- 927
+ + L V+ S+ G +T ++G +G+GK+TL++V+ G + G Y E + + P
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 928 -----VQETFARVSGYCEQTDIHS-------PNITVEESVIFSAWLRLAPEINSKTKAEF 975
+ TF E T + + P + S+ + W+ E+ E
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEM-----VEK 133
Query: 976 VNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARA 1035
++LE ++L + D G LS Q K + I L+ NP +I MD+P G+
Sbjct: 134 AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGL 188
Query: 1036 AAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
A + V + G T + H+ +DI + + + + G+II G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEG 235
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 79/206 (38%), Gaps = 33/206 (16%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L+ VS + G +TL++GP G GKST + ++G L G V + + P +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAEL 79
Query: 247 SAY----ISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDT 302
Y Q + EMTV E + + E++ E P
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENL--------------LIGEINPGE-------SPLNSL 118
Query: 303 YMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTK 362
+ K K + + IL+ L L D G +SGGQ K + G ++ K
Sbjct: 119 FYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPK 173
Query: 363 ALFMDEITNGLDSSTAYQIIACIQQL 388
+ MD+ G+ A+ I + +L
Sbjct: 174 MIVMDQPIAGVAPGLAHDIFNHVLEL 199
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 18/192 (9%)
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQE 930
K +L ++ + G + L+G +GAGKTT + +++ + +SG V + G V+E
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV----TVFGKNVVEE 82
Query: 931 --TFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-DA 987
++ Y + N+ E + F A + +S E V E L +
Sbjct: 83 PHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS---SSSEIEEMVERATEIAGLGEK 139
Query: 988 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV 1047
IKD V+ S ++L IA L+ NP + +DEPT+GLD A V + +K
Sbjct: 140 IKDR------VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193
Query: 1048 NTGRTIVCTIHQ 1059
G TI+ + H
Sbjct: 194 QEGLTILVSSHN 205
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 182 AKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTG-------EVSYN 234
K IL +S ++ G + L+GP G GK+T L+ +S + PS + E +
Sbjct: 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE 85
Query: 235 GYKLEEFVPPKTSAY 249
KL ++P + AY
Sbjct: 86 VRKLISYLPEEAGAY 100
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 57/237 (24%), Positives = 108/237 (45%), Gaps = 27/237 (11%)
Query: 849 VAFQDLKY-YVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVL 907
V FQD+ + Y + P + +L +T +LRPG +TAL+G +G+GK+T+ +L
Sbjct: 15 VQFQDVSFAYPNRP-----------DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL 63
Query: 908 AG-RKTSGYVEGEIKISGYPKVQET----FARVSGYCEQTDIHSPNITVEESVIFSAWLR 962
+ +G G++ + G P Q +V+ ++ + +++E++ + L
Sbjct: 64 QNLYQPTG---GQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGR--SLQENIAYG--LT 116
Query: 963 LAPEINSKTKAEFVNEVLETIE-LDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSI 1021
P + T A + I L D+ V G + LS QR+ + +A L+ P +
Sbjct: 117 QKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAG-SQLSGGQRQAVALARALIRKPCV 175
Query: 1022 IFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGG 1078
+ +D+ T+ LDA + V + + V I Q + + E D ++ L+ G
Sbjct: 176 LILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQ-HLSLVEQADHILFLEGGA 231
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 34/196 (17%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+L ++ L+PG +T L+GP G GKST L P+ G++ +G L ++
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQY---- 84
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
LH + VG + + G+ P M+
Sbjct: 85 -----EHRYLH-------------RQVAAVGQEPQVFGRSLQENIAYGLTQKPT----ME 122
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALF 365
I+ VK + I GL DT V A + +SGGQ++ + ++ L
Sbjct: 123 EITAAAVKSGAHS----FISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLI 177
Query: 366 MDEITNGLDSSTAYQI 381
+D+ T+ LD+++ Q+
Sbjct: 178 LDDATSALDANSQLQV 193
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 29/229 (12%)
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKISGYPK- 927
+ + L V+ S+ G +T ++G +G+GK+TL++V+ G + G Y E + + P
Sbjct: 19 EFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 928 -----VQETFARVSGYCEQTDIHS-------PNITVEESVIFSAWLRLAPEINSKTKAEF 975
+ TF E T + + P + S+ + W+ E+ K
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKA---- 134
Query: 976 VNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARA 1035
++LE ++L + D G LS Q K + I L+ NP +I MDEP G+
Sbjct: 135 -FKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188
Query: 1036 AAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
A + V + G T + H+ +DI + + + + G+II G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEG 235
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 79/206 (38%), Gaps = 33/206 (16%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L+ VS + G +TL++GP G GKST + ++G L G V + + P +
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAEL 79
Query: 247 SAY----ISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDT 302
Y Q + EMTV E + + E++ E P
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENL--------------LIGEINPGE-------SPLNSL 118
Query: 303 YMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTK 362
+ K K + + IL+ L L D G +SGGQ K + G ++ K
Sbjct: 119 FYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPK 173
Query: 363 ALFMDEITNGLDSSTAYQIIACIQQL 388
+ MDE G+ A+ I + +L
Sbjct: 174 MIVMDEPIAGVAPGLAHDIFNHVLEL 199
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 23/209 (11%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARV 935
+L D+ + G L A+ G +GAGKT+L+ ++ G EG+IK SG R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI 995
S +C Q P T++E++IF S KA ++ E I A KD++V
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSYD-EYRYRSVIKA---CQLEEDISKFAEKDNIVLG 155
Query: 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNIVNTGRTI 1053
G LS Q+ ++++A + + + +D P LD + + K + N R +
Sbjct: 156 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 215
Query: 1054 VCTIHQPSIDIFEAFDELILLKTGGRIIY 1082
V + ++ + D++++L G Y
Sbjct: 216 VTS----KMEHLKKADKILILHEGSSYFY 240
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 95/209 (45%), Gaps = 23/209 (11%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARV 935
+L ++ ++ G + A+ G +G+GKT+L+ ++ G + EG IK SG RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI 995
S +C Q P T++E++IF + + ++ + E D ++++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQD---NTVLGE 156
Query: 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNIVNTGRTI 1053
GV LS QR R+++A + + + +D P LD V + K + N R +
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 1054 VCTIHQPSIDIFEAFDELILLKTGGRIIY 1082
V + ++ D++++L G Y
Sbjct: 216 VTS----KMEHLRKADKILILHQGSSYFY 240
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 23/209 (11%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARV 935
+L D+ + G L A+ G +GAGKT+L+ ++ G EG+IK SG R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI 995
S +C Q P T++E++I S KA ++ E I A KD++V
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIAGVSYD-EYRYRSVIKA---CQLEEDISKFAEKDNIVLG 155
Query: 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNIVNTGRTI 1053
G LS QR R+++A + + + +D P LD + + K + N R +
Sbjct: 156 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 215
Query: 1054 VCTIHQPSIDIFEAFDELILLKTGGRIIY 1082
V + ++ + D++++L G Y
Sbjct: 216 VTS----KMEHLKKADKILILHEGSSYFY 240
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 49/201 (24%), Positives = 92/201 (45%), Gaps = 24/201 (11%)
Query: 892 LMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISG---YPKVQETFARVSGYCEQTDIHSPN 948
L+G +GAGK+ ++++AG GE++++G P E R G+ Q P+
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD--RGEVRLNGADITPLPPER--RGIGFVPQDYALFPH 84
Query: 949 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKR 1008
++V ++ + LR + + + E L L K + LS +R+R
Sbjct: 85 LSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPAR--------LSGGERQR 134
Query: 1009 LTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEA- 1067
+ +A LV P ++ +DEP + +D + ++M ++ + R I + D+ EA
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFV---QREFDVPILHVTHDLIEAA 191
Query: 1068 --FDELILLKTGGRIIYCGPL 1086
DE+ ++ GRI+ G L
Sbjct: 192 MLADEVAVM-LNGRIVEKGKL 211
Score = 37.0 bits (84), Expect = 0.081, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 201 LLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTS-AYISQNDLHIAE 259
+LLGP G GKS FL+ ++G + P GEV NG + P + ++ Q+
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPH 84
Query: 260 MTVRETVDFSAR 271
++V + + R
Sbjct: 85 LSVYRNIAYGLR 96
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 95/209 (45%), Gaps = 23/209 (11%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARV 935
+L ++ ++ G + A+ G +G+GKT+L+ ++ G + EG IK SG RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI 995
S +C Q P T++E++IF + + ++ + E D ++++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQD---NTVLGE 156
Query: 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNIVNTGRTI 1053
GV LS QR R+++A + + + +D P LD V + K + N R +
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 1054 VCTIHQPSIDIFEAFDELILLKTGGRIIY 1082
V + ++ D++++L G Y
Sbjct: 216 VTS----KMEHLRKADKILILHQGSSYFY 240
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With
Atp
Length = 290
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 24/209 (11%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARV 935
+L D+ + G L A+ G +GAGKT+L+ ++ G EG+IK SG R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI 995
S +C Q P T++E++I ++ S KA ++ E I A KD++V
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIGVSYDEY--RYRSVIKA---CQLEEDISKFAEKDNIVLG 154
Query: 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNIVNTGRTI 1053
G LS Q+ ++++A + + + +D P LD + + K + N R +
Sbjct: 155 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 1054 VCTIHQPSIDIFEAFDELILLKTGGRIIY 1082
V + ++ + D++++L G Y
Sbjct: 215 VTS----KMEHLKKADKILILHEGSSYFY 239
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 23/145 (15%)
Query: 948 NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRK 1007
++TVE+++ F A + P+I K E L + L +K +G P LS + +
Sbjct: 806 DMTVEDALDFFASI---PKIKRKL------ETLYDVGLGYMK---LGQPATT-LSGGEAQ 852
Query: 1008 RLTIAVEL---VANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDI 1064
R+ +A EL ++ +DEPTTGL A ++ + +V+ G T++ H ++D+
Sbjct: 853 RVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH--NLDV 910
Query: 1065 FEAFDELILL-----KTGGRIIYCG 1084
+ D +I L GG+I+ G
Sbjct: 911 IKTADYIIDLGPEGGDRGGQIVAVG 935
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 23/145 (15%)
Query: 948 NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRK 1007
++TVE+++ F A + P+I K E L + L +K +G P LS + +
Sbjct: 504 DMTVEDALDFFASI---PKIKRKL------ETLYDVGLGYMK---LGQPATT-LSGGEAQ 550
Query: 1008 RLTIAVEL---VANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDI 1064
R+ +A EL ++ +DEPTTGL A ++ + +V+ G T++ H ++D+
Sbjct: 551 RVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH--NLDV 608
Query: 1065 FEAFDELILL-----KTGGRIIYCG 1084
+ D +I L GG+I+ G
Sbjct: 609 IKTADYIIDLGPEGGDRGGQIVAVG 633
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 95/209 (45%), Gaps = 24/209 (11%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARV 935
+L ++ ++ G + A+ G +G+GKT+L+ ++ G + EG IK SG RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI 995
S +C Q P T++E++I ++ E K+ + + + ++++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIGVSY----DEYRYKSVVKACQLQQDITKFAEQDNTVLGE 155
Query: 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNIVNTGRTI 1053
GV LS QR R+++A + + + +D P LD V + K + N R +
Sbjct: 156 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 214
Query: 1054 VCTIHQPSIDIFEAFDELILLKTGGRIIY 1082
V + ++ D++++L G Y
Sbjct: 215 VTS----KMEHLRKADKILILHQGSSYFY 239
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 39.3 bits (90), Expect = 0.017, Method: Composition-based stats.
Identities = 45/191 (23%), Positives = 85/191 (44%), Gaps = 22/191 (11%)
Query: 860 TPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGE 919
+ LE+R+ K +L +T ++ G + G +G GKTTL+ ++ ++GE
Sbjct: 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGE 65
Query: 920 IKISGYPKVQETFARVSG---YCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFV 976
I +G P +V G + + I I+VE+ + A L K +
Sbjct: 66 IIYNGVP-----ITKVKGKIFFLPEEIIVPRKISVEDYLKAVASL-----YGVKVNKNEI 115
Query: 977 NEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 1036
+ LE++E+ +K L LS +R+ +A L+ N I +D+P +D +
Sbjct: 116 MDALESVEVLDLKKKL------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 169
Query: 1037 AIVMRAVKNIV 1047
V++++ I+
Sbjct: 170 HKVLKSILEIL 180
Score = 36.2 bits (82), Expect = 0.14, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNG 235
+L ++ ++ G + GP G GK+T LK +S L P + GE+ YNG
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNG 70
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 25/210 (11%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARV 935
+L ++ ++ G + A+ G +G+GKT+L+ ++ G + EG IK SG RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKA-EFVNEVLETIELDAIKDSLVG 994
S +C Q P T++E++I S S KA + ++ + E D ++++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENII-SGVSYDEYRYKSVVKACQLQQDITKFAEQD---NTVLG 155
Query: 995 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNIVNTGRT 1052
GV LS QR R+++A + + + +D P LD V + K + N R
Sbjct: 156 EGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 214
Query: 1053 IVCTIHQPSIDIFEAFDELILLKTGGRIIY 1082
+V + ++ D++++L G Y
Sbjct: 215 LVTS----KMEHLRKADKILILHQGSSYFY 240
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 94/209 (44%), Gaps = 23/209 (11%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARV 935
+L ++ ++ G + A+ G +G+GKT+L+ ++ G + EG IK SG RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI 995
S +C Q P T++E++I + + ++ + E D ++++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQD---NTVLGE 156
Query: 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRA--VKNIVNTGRTI 1053
GV LS QR R+++A + + + +D P LD V + K + N R +
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 1054 VCTIHQPSIDIFEAFDELILLKTGGRIIY 1082
V + ++ D++++L G Y
Sbjct: 216 VTS----KMEHLRKADKILILHQGSSYFY 240
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 23/145 (15%)
Query: 948 NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRK 1007
+ TVE+++ F A + P+I K LET+ + +G P LS + +
Sbjct: 806 DXTVEDALDFFASI---PKIKRK---------LETLYDVGLGYXKLGQPATT-LSGGEAQ 852
Query: 1008 RLTIAVEL---VANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDI 1064
R+ +A EL ++ +DEPTTGL A ++ + +V+ G T++ H ++D+
Sbjct: 853 RVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH--NLDV 910
Query: 1065 FEAFDELILL-----KTGGRIIYCG 1084
+ D +I L GG+I+ G
Sbjct: 911 IKTADYIIDLGPEGGDRGGQIVAVG 935
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 37.0 bits (84), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 37/195 (18%), Positives = 81/195 (41%), Gaps = 29/195 (14%)
Query: 885 RPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQ--- 941
RPG + L+G +G GK+T + +LAG++ + P+ QE G Q
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLG----RFDDPPEWQEIIKYFRGSELQNYF 156
Query: 942 TDIHSPNITVEESVIFSAWLRLAP--------------EINSKTKAEFVNEVLETIELDA 987
T + +I +++I ++ P ++ + E V ++ ++L+
Sbjct: 157 TKMLEDDI---KAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLEN 213
Query: 988 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV 1047
+ + LS + +R I + V + DEP++ LD + + +++++
Sbjct: 214 VLKR-----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLL 268
Query: 1048 NTGRTIVCTIHQPSI 1062
+ ++C H S+
Sbjct: 269 APTKYVICVEHDLSV 283
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 195 KPGRMTLLLGPPGCGKSTFLKALSGNLDPSL 225
+PG++ L+G G GKST LK L+G P+L
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL 131
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 978 EVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPS---IIFMDEPTTGLDAR 1034
+VL + L +K +G P LS + +R+ +A EL + + +DEPT GL
Sbjct: 787 QVLHDVGLGYVK---LGQPATT-LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFE 842
Query: 1035 AAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILL-----KTGGRIIYCG 1084
++ + +V+ G T++ H ++D+ + D +I L K GG I+ G
Sbjct: 843 DVRKLVEVLHRLVDRGNTVIVIEH--NLDVIKNADHIIDLGPEGGKEGGYIVATG 895
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 14/129 (10%)
Query: 943 DIHS-PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE------LDAIKDSLVGI 995
+IH +++ E + F L L ++ + E V E+L+ IE +D + L
Sbjct: 405 NIHEFTELSISEELEFLKNLNL-----TEREREIVGELLKEIEKRLEFLVDVGLEYLTLS 459
Query: 996 PGVNGLSTEQRKRLTIAVELVANPS--IIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTI 1053
LS + +R+ +A ++ + + I +DEPT GL R +++ +K + + G T+
Sbjct: 460 RSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTV 519
Query: 1054 VCTIHQPSI 1062
+ H +
Sbjct: 520 IVVEHDEEV 528
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 1001 LSTEQRKRLTIAVELVANP---SIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTI 1057
LS + +R+ +A EL + ++ +DEPTTGL + R + +V+ G T++
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790
Query: 1058 HQPSIDIFEAFDELILL-----KTGGRIIYCG 1084
H+ + + A D ++ + + GGR++ G
Sbjct: 791 HK--MQVVAASDWVLDIGPGAGEDGGRLVAQG 820
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 34.7 bits (78), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 15/125 (12%)
Query: 1001 LSTEQRKRLTIAVELVAN--PSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIH 1058
LS + +R+ +A ++ + + +DEP+ GL R ++ + + + G T++ H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 1059 QPSIDIFEAFDELILL-----KTGGRIIYCGP----LGKHSSQVIEYFEGISG--VPKIR 1107
D E D ++ + + GGRI++ GP L S Y G +P IR
Sbjct: 582 DE--DTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSITGAYLSGRESIEIPAIR 639
Query: 1108 NNYNP 1112
+ +P
Sbjct: 640 RSVDP 644
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 788 LTFLKSSGSSRVMISHEK--------LAKMQESEDSSYGEPVKENSRSTPMTNKESYKGR 839
LT L+ G++ +++ H++ + + G V + NK+S G
Sbjct: 566 LTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSITGA 625
Query: 840 MVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAG 899
+ E + + ++ VD ++ G + LR + DV+ L GVLT++ GVSG+G
Sbjct: 626 YLSGRESIEIPA--IRRSVDPRRQLTVVGAREHNLRGI-DVSFPL--GVLTSVTGVSGSG 680
Query: 900 KTTLM-DVLA 908
K+TL+ D+LA
Sbjct: 681 KSTLVNDILA 690
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 1001 LSTEQRKRLTIAVEL---VANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTI 1057
LS + +R+ +A EL ++ +DEPTTGL ++ + +V+ G T++
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 1058 HQPSIDIFEAFDELILL 1074
H ++D+ + D +I L
Sbjct: 924 H--NLDVIKTSDWIIDL 938
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate Regulatory
Protein (Bt4638) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 34.3 bits (77), Expect = 0.48, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 1024 MDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRII-- 1081
MD+ G+++ A IV+ + I +G+ + IH+ +I+I +A DEL + + +
Sbjct: 103 MDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDELETFRKNPKPLRD 162
Query: 1082 YCGPLGKHSSQVIEYFE 1098
YC L +Q + +E
Sbjct: 163 YCTQLHDIENQADDVYE 179
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 158 PTLWNSFKGMISVLPKLS-GYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKA 216
P + F G +V KLS ++ + + +L+HV LL GPPG GK+T
Sbjct: 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV----------LLAGPPGLGKTTLAHI 70
Query: 217 LSGNLDPSLKVT 228
++ L ++ VT
Sbjct: 71 IASELQTNIHVT 82
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 158 PTLWNSFKGMISVLPKLS-GYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKA 216
P + F G +V KLS ++ + + +L+HV LL GPPG GK+T
Sbjct: 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV----------LLAGPPGLGKTTLAHI 70
Query: 217 LSGNLDPSLKVT 228
++ L ++ VT
Sbjct: 71 IASELQTNIHVT 82
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 158 PTLWNSFKGMISVLPKLS-GYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKA 216
P + F G +V KLS ++ + + +L+HV LL GPPG GK+T
Sbjct: 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV----------LLAGPPGLGKTTLAHI 70
Query: 217 LSGNLDPSLKVT 228
++ L ++ VT
Sbjct: 71 IASELQTNIHVT 82
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 158 PTLWNSFKGMISVLPKLS-GYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKA 216
P + F G +V KLS ++ + + +L+HV LL GPPG GK+T
Sbjct: 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV----------LLAGPPGLGKTTLAHI 70
Query: 217 LSGNLDPSLKVT 228
++ L ++ VT
Sbjct: 71 IASELQTNIHVT 82
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 158 PTLWNSFKGMISVLPKLS-GYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKA 216
P + F G +V KLS ++ + + +L+HV LL GPPG GK+T
Sbjct: 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV----------LLAGPPGLGKTTLAHI 70
Query: 217 LSGNLDPSLKVT 228
++ L ++ VT
Sbjct: 71 IASELQTNIHVT 82
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 30/172 (17%)
Query: 891 ALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNIT 950
+ G +G GK+TLM +A + + G+P +E + Y E H + T
Sbjct: 465 GICGPNGCGKSTLMRAIANGQ----------VDGFPTQEECR---TVYVE----HDIDGT 507
Query: 951 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLT 1010
++ + L E TK ++++E D ++ +P ++ LS + +L
Sbjct: 508 HSDTSV----LDFVFESGVGTKEAIKDKLIEF----GFTDEMIAMP-ISALSGGWKMKLA 558
Query: 1011 IAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSI 1062
+A ++ N I+ +DEPT LD A ++ N +NT TI S+
Sbjct: 559 LARAVLRNADILLLDEPTNHLDTVNVAWLV----NYLNTCGITSITISHDSV 606
Score = 33.5 bits (75), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 182 AKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALS-GNLD 222
AKI +LN LK R + GP GCGKST ++A++ G +D
Sbjct: 447 AKI-LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD 487
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 978 EVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 1037
E+ E + + +V + GLS Q+ +L +A P +I +DEPT LD +
Sbjct: 879 EIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLG 938
Query: 1038 IVMRAVK 1044
+ +A+K
Sbjct: 939 ALSKALK 945
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 891 ALMGVSGAGKTTLMDVLAGR--KTSG--YVEGEIKISGYPKVQETFARVSGYCEQT 942
A++G +GAGK+TL++VL G TSG Y +I+ Y K Q FA + + ++T
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIA-YIK-QHAFAHIESHLDKT 756
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 20/117 (17%)
Query: 202 LLGPPGCGKSTFLKALSGNLDPSLKVTGEV-SYNGYKLEEFVPPKTSAYISQNDL-HIAE 259
++GP G GKST + L+G L P+ +GEV ++ ++ AYI Q+ HI
Sbjct: 704 VIGPNGAGKSTLINVLTGELLPT---SGEVYTHENCRI---------AYIKQHAFAHIES 751
Query: 260 MTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTL 316
+ ++ G ETM +R+ + + D + K ++G R +
Sbjct: 752 HLDKTPSEYIQWRFQTGEDRETMDRANRQ------INENDAEAMNKIFKIEGTPRRI 802
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 33.5 bits (75), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 341 RGISGGQKK------RLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDS 394
RG+SGG++ ++ E+ G A F+DE + LD+ +I + +++L +
Sbjct: 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKV 337
Query: 395 TALISLLQPAPETFD 409
I+ + E FD
Sbjct: 338 IVFITHDREFSEAFD 352
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 158 PTLWNSFKGMISVLPKLS-GYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKA 216
P + F G +V KLS ++ + + +L+HV LL GPPG G++T
Sbjct: 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV----------LLAGPPGLGRTTLAHI 70
Query: 217 LSGNLDPSLKVT 228
++ L ++ VT
Sbjct: 71 IASELQTNIHVT 82
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 1001 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMR 1041
LS ++R+ IA+ L+ +P ++ +DEPT+ LD A +++
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 181 EAKINILNHVSGILKPGRM----------TLLLGPPGCGKSTFLKALS 218
EAK+ + V + P R LLLGPPGCGK+ KA++
Sbjct: 13 EAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVA 60
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 197 GRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE 240
G ++LGP G GK+T L+A+SG L +G + NG ++ +
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISG----LLPYSGNIFINGMEVRK 69
Score = 30.8 bits (68), Expect = 6.4, Method: Composition-based stats.
Identities = 42/183 (22%), Positives = 82/183 (44%), Gaps = 28/183 (15%)
Query: 892 LMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP--KVQETFARVSGYCEQTDIHSPNI 949
++G +G+GKTTL+ ++G G I I+G K++ + E +I +
Sbjct: 35 ILGPNGSGKTTLLRAISGLLP---YSGNIFINGMEVRKIRNYIRYSTNLPEAYEI---GV 88
Query: 950 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL--DAIKDSLVGIPGVNGLSTEQRK 1007
TV + V L E+ + F+ E+L+ ++L + ++ L LS Q
Sbjct: 89 TVNDIVY------LYEELKGLDRDLFL-EMLKALKLGEEILRRKLYK------LSAGQSV 135
Query: 1008 RLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEA 1067
+ ++ L + P I+ +DEP +DA ++ R +K G+ + H+ +D+
Sbjct: 136 LVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY---GKEGILVTHE--LDMLNL 190
Query: 1068 FDE 1070
+ E
Sbjct: 191 YKE 193
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 149 CEVVHGKPLPTLWN----SFKGMISVLPKLSGYKSLEAKINILN-HVSGILKP------G 197
CE + +PL L +GM V ++ Y+++ ++ +++ H LKP G
Sbjct: 156 CETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTG 215
Query: 198 RMTLLLGPPGCGKSTFLKALSG 219
R+++ G G GKS+ L AL G
Sbjct: 216 RISIFAGQSGVGKSSLLNALLG 237
>pdb|1WPP|A Chain A, Structure Of Streptococcus Gordonii Inorganic
Pyrophosphatase
pdb|1WPP|B Chain B, Structure Of Streptococcus Gordonii Inorganic
Pyrophosphatase
Length = 311
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 1376 TSWALNAMVTSQYGDIDKEMIVFGETKKLSSFIQDYFGFHHDRLPITAA 1424
+S+A + YG +D E + GE + ++F+ DYFG R+ IT+A
Sbjct: 19 SSYAFAYLAREAYG-LDTEAVALGEPNEETAFVLDYFGVAAPRV-ITSA 65
>pdb|1K20|A Chain A, Inorganic Pyrophosphatase (Family Ii) From Streptococcus
Gordonii At 1.5 A Resolution
pdb|1K20|B Chain B, Inorganic Pyrophosphatase (Family Ii) From Streptococcus
Gordonii At 1.5 A Resolution
Length = 310
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 1376 TSWALNAMVTSQYGDIDKEMIVFGETKKLSSFIQDYFGFHHDRLPITAA 1424
+S+A + YG +D E + GE + ++F+ DYFG R+ IT+A
Sbjct: 18 SSYAFAYLAREAYG-LDTEAVALGEPNEETAFVLDYFGVAAPRV-ITSA 64
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 182 AKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALS-GNLD 222
AKI +LN LK R + GP GCGKST +A++ G +D
Sbjct: 441 AKI-LLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVD 481
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 891 ALMGVSGAGKTTLMDVLAGR--KTSG--YVEGEIKISGYPKVQETFARVSGYCEQT 942
A++G +GAGK+TL++VL G TSG Y +I+ Y K Q FA + + ++T
Sbjct: 697 AVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIA-YIK-QHAFAHIESHLDKT 750
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1044
+ GLS Q+ +L +A P +I +DEPT LD + + +A+K
Sbjct: 893 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK 939
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 182 AKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALS-GNLD 222
AKI +LN LK R + GP GCGKST +A++ G +D
Sbjct: 447 AKI-LLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVD 487
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 891 ALMGVSGAGKTTLMDVLAGR--KTSG--YVEGEIKISGYPKVQETFARVSGYCEQT 942
A++G +GAGK+TL++VL G TSG Y +I+ Y K Q FA + + ++T
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIA-YIK-QHAFAHIESHLDKT 756
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1044
+ GLS Q+ +L +A P +I +DEPT LD + + +A+K
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK 945
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 341 RGISGGQKKRLTT------GEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDS 394
RG+SGG++ ++ E+ G A F+DE + LD+ +I + +++L +
Sbjct: 278 RGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKV 337
Query: 395 TALISLLQPAPETFD 409
I+ + E FD
Sbjct: 338 IVFITHDREFSEAFD 352
>pdb|4A2I|V Chain V, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
Length = 277
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 149 CEVVHGKPLPTLWN----SFKGMISVLPKLSGYKSLEAKINILN-HVSGILKP------G 197
CE + +PL L +GM V ++ Y+++ ++ +++ H LKP G
Sbjct: 101 CETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTG 160
Query: 198 RMTLLLGPPGCGKSTFLKALSG 219
R+++ G G GKS+ L AL G
Sbjct: 161 RISIFAGQSGVGKSSLLNALLG 182
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 32.0 bits (71), Expect = 2.9, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 176 GYKSLEAKINI-LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVT 228
G + L+ K+ + L +P LL GPPG GK+T ++ L +L+VT
Sbjct: 16 GQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|2YKR|W Chain W, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
Length = 350
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 149 CEVVHGKPLPTLWN----SFKGMISVLPKLSGYKSLEAKINILN-HVSGILKP------G 197
CE + +P+ L +GM V ++ Y+++ ++ +++ H LKP G
Sbjct: 148 CETLQIEPIIVLNKIDLLDDEGMAFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTG 207
Query: 198 RMTLLLGPPGCGKSTFLKALSG 219
R+++ G G GKS+ L AL G
Sbjct: 208 RISIFAGQSGVGKSSLLNALLG 229
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 191 SGILKPGRMTLLLGPPGCGKSTFLKALS 218
+G+ P R LL GPPG GK+ KA++
Sbjct: 142 TGLRAPARGLLLFGPPGNGKTMLAKAVA 169
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 194 LKPGRMTLLLGPPGCGKSTFLKALSG 219
+ P + L GPPGCGK+ KA++
Sbjct: 46 MTPSKGVLFYGPPGCGKTLLAKAIAN 71
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 31.6 bits (70), Expect = 3.1, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 176 GYKSLEAKINI-LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVT 228
G + L+ K+ + L +P LL GPPG GK+T ++ L +L+VT
Sbjct: 16 GQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 31.6 bits (70), Expect = 3.1, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 176 GYKSLEAKINI-LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVT 228
G + L+ K+ + L +P LL GPPG GK+T ++ L +L+VT
Sbjct: 16 GQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 194 LKPGRMTLLLGPPGCGKSTFLKALS 218
+ P + L GPPGCGK+ KA++
Sbjct: 508 MTPSKGVLFYGPPGCGKTLLAKAIA 532
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 194 LKPGRMTLLLGPPGCGKSTFLKALS 218
+ P + L GPPGCGK+ KA++
Sbjct: 508 MTPSKGVLFYGPPGCGKTLLAKAIA 532
>pdb|2J68|A Chain A, Bacterial Dynamin-Like Protein Bdlp, Gdp Bound
pdb|2J69|A Chain A, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|B Chain B, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|C Chain C, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|D Chain D, Bacterial Dynamin-like Protein Bdlp
pdb|2W6D|A Chain A, Bacterial Dynamin-Like Protein Lipid Tube Bound
pdb|2W6D|B Chain B, Bacterial Dynamin-Like Protein Lipid Tube Bound
Length = 695
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 175 SGYKSLEAKINILNHVSGILKPGRMTLL-LGPPGCGKSTFLKALSG-NLDPS 224
SG SLE I + S L+ G LL LG GKSTFL AL G NL PS
Sbjct: 46 SGKLSLERDIEDITIASKNLQQGVFRLLVLGDMKRGKSTFLNALIGENLLPS 97
>pdb|2BDT|A Chain A, Crystal Structure Of The Putative Gluconate Kinase From
Bacillus Halodurans, Northeast Structural Genomics
Target Bhr61
Length = 189
Score = 31.6 bits (70), Expect = 3.4, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 198 RMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEV 231
++ ++ GP G GKST K L+ LD S + G++
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDI 36
>pdb|3GH4|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12
pdb|3GH5|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Glcnac
pdb|3GH7|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Galnac
pdb|3SUR|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nag-Thiazoline.
pdb|3SUS|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With
Gal-Nag-Thiazoline
pdb|3SUT|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Pugnac
pdb|3SUU|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Gal-Pugnac
pdb|3SUV|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Dnj
pdb|3SUW|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Cas
Length = 525
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 850 AFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLR 885
A+ D+KYY D+P+ ++ RGF + +D T ++
Sbjct: 417 AYLDMKYYSDSPIGLQWRGFVNTNRAYNWDPTDCIK 452
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 984 ELDAIKDSLVGIPGVNGLSTEQRKRLT--IAVELVANPSIIFMDEPTTGLDARAAAIVMR 1041
+L+ I D L+ I ++ LST ++ L + E A + ++ G + + I+++
Sbjct: 331 DLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQ---GEEGTSWYIILK 387
Query: 1042 AVKNIVNTGRTIVCTIHQ 1059
N+V G+ +VCT+H+
Sbjct: 388 GSVNVVIYGKGVVCTLHE 405
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 984 ELDAIKDSLVGIPGVNGLSTEQRKRLT--IAVELVANPSIIFMDEPTTGLDARAAAIVMR 1041
+L+ I D L+ I ++ LST ++ L + E A + ++ G + + I+++
Sbjct: 331 DLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQ---GEEGTSWYIILK 387
Query: 1042 AVKNIVNTGRTIVCTIHQ 1059
N+V G+ +VCT+H+
Sbjct: 388 GSVNVVIYGKGVVCTLHE 405
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 984 ELDAIKDSLVGIPGVNGLSTEQRKRLT--IAVELVANPSIIFMDEPTTGLDARAAAIVMR 1041
+L+ I D L+ I ++ LST ++ L + E A + ++ G + + I+++
Sbjct: 26 DLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQ---GEEGTSWYIILK 82
Query: 1042 AVKNIVNTGRTIVCTIHQ 1059
N+V G+ +VCT+H+
Sbjct: 83 GSVNVVIYGKGVVCTLHE 100
>pdb|1O7F|A Chain A, Crystal Structure Of The Regulatory Domain Of Epac2
Length = 469
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 984 ELDAIKDSLVGIPGVNGLSTEQRKRLT--IAVELVANPSIIFMDEPTTGLDARAAAIVMR 1041
+L+ I D L+ I ++ LST ++ L + E A + ++ G + + I+++
Sbjct: 331 DLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQ---GEEGTSWYIILK 387
Query: 1042 AVKNIVNTGRTIVCTIHQ 1059
N+V G+ +VCT+H+
Sbjct: 388 GSVNVVIYGKGVVCTLHE 405
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 194 LKPGRMTLLLGPPGCGKSTFLKALSGNL 221
+KP + LL GPPG GK+ KA++ +
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATI 239
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,546,526
Number of Sequences: 62578
Number of extensions: 1717284
Number of successful extensions: 4713
Number of sequences better than 100.0: 137
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 4282
Number of HSP's gapped (non-prelim): 392
length of query: 1449
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1338
effective length of database: 8,027,179
effective search space: 10740365502
effective search space used: 10740365502
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)