Query 000517
Match_columns 1449
No_of_seqs 482 out of 4814
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 16:30:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000517.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_291-294//hhsearch_pdb/000517hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 650.3 55.3 774 183-1095 430-1304(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 593.7 63.8 772 184-1086 403-1253(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 456.6 34.6 436 185-1088 106-560 (607)
4 3ux8_A Excinuclease ABC, A sub 1.0 1 1 449.6 39.0 215 183-432 30-297 (670)
5 2iw3_A Elongation factor 3A; a 1.0 1 1 447.7 40.3 427 184-1085 448-981 (986)
6 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 444.6 36.0 436 185-1088 36-490 (538)
7 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 437.0 31.7 202 876-1100 283-486 (538)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 420.7 32.2 201 875-1100 361-568 (608)
9 3pih_A Uvrabc system protein A 1.0 1 1 342.8 33.6 198 875-1087 598-898 (916)
10 4f4c_A Multidrug resistance pr 1.0 1 1 329.3 15.8 213 847-1086 414-636 (1321)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=650.32 Aligned_cols=774 Identities=19% Similarity=0.246 Sum_probs=396.9
Q ss_pred CCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCC
Q ss_conf 3321224156883873999976999947999999929999999701099998850788889---9518997578866889
Q 000517 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAE 259 (1449)
Q Consensus 183 ~~~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~---~~~~aYV~Q~D~h~~~ 259 (1449)
..++|+|+|+.++||++++|+||+|||||||+++|.|.++|. +|+|.+||+++++... |+.++||+|+. ++.+
T Consensus 430 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~-~Lf~ 505 (1321)
T 4f4c_A 430 DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEP-ALFN 505 (1321)
T ss_dssp TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSC-CCCS
T ss_pred CCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCC---CCCCCCCCCCCHHCCHHHHHHCCCCCCCCC-EEEC
T ss_conf 874333318862288278998058985778888754565164---486157996501125999850466658753-3207
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999998802999822355672099886299999796899999863100012129999999099753453234644
Q 000517 260 MTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAM 339 (1449)
Q Consensus 260 lTVrEtL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~ 339 (1449)
.|||||+.|+. |+.+.+++.+|+..++.+..+. .|++..||.||+..
T Consensus 506 ~TI~eNI~~g~-------------------------~~~~~~~v~~a~~~a~l~~~i~--------~lp~G~~T~vGe~G 552 (1321)
T 4f4c_A 506 CTIEENISLGK-------------------------EGITREEMVAACKMANAEKFIK--------TLPNGYNTLVGDRG 552 (1321)
T ss_dssp EEHHHHHHTTC-------------------------TTCCHHHHHHHHHHTTCHHHHH--------HSTTTTSSEESSSS
T ss_pred CCHHHHHHHHC-------------------------CCCHHHHHHHHHHHCCCHHHHH--------CCCCCCCCEECCCC
T ss_conf 86167886415-------------------------5220999999998756546887--------08888860755898
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEEEEEC
Q ss_conf 55677323315999999918994989968999999999999999999998717968999982590048852271999818
Q 000517 340 RRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE 419 (1449)
Q Consensus 340 ~rGLSGGQKKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~IilL~~ 419 (1449)
. .||||||||++||||++.+|+|++||||||+||+.++..|.++|+++.+ ++|+|+.-|+. ++...+|+|++|.+
T Consensus 553 ~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrl--s~i~~aD~Iivl~~ 627 (1321)
T 4f4c_A 553 T-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRL--STIRNADLIISCKN 627 (1321)
T ss_dssp C-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCT--TTTTTCSEEEEEET
T ss_pred C-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEECCCH--HHHHHCCEEEEEEC
T ss_conf 8-7777787999999987259998998455446887899999999999847--98899973638--78986898999639
Q ss_pred CEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHH--CCHHHHHHHH--CCCCC-C----------CCCCCHHHHHHHH
Q ss_conf 949994595559999885599889999924589872--1802243321--02589-9----------7667987899998
Q 000517 420 GKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEV--LSRKDQAQFW--LHTEL-P----------YSYFSVDMFSKKF 484 (1449)
Q Consensus 420 G~ivy~Gp~~~~~~~Fe~lGf~cp~~~~~adfl~ev--~s~~~~~~~~--~~~~~-~----------~~~~s~~~f~~~~ 484 (1449)
|+++.+|+++++++- .| .-++..... ....+..... ..... . ......++.....
T Consensus 628 G~ive~Gth~eL~~~---~g-------~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1321)
T 4f4c_A 628 GQVVEVGDHRALMAQ---QG-------LYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRV 697 (1321)
T ss_dssp TEEEEEECHHHHHTT---TC-------HHHHHHHHHHHHHHHHHHHCC--------------------------------
T ss_pred CEEECCCCHHHHHHH---HH-------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 965136899999985---32-------79999996221222233233443322321112222234222222211022111
Q ss_pred HCCHHHHHHHHHHCCCCCCCCCCCCC--------CCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Q ss_conf 30932574799732756688999776--------6667545649999999999999998606389999999999999999
Q 000517 485 KESPLVKKLDEELLVPYDKSKSPKNA--------ISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMA 556 (1449)
Q Consensus 485 ~~s~~~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~ii~ali~ 556 (1449)
+.+............. ......... ........+.+..+ ...+..+..++..++..++.+.+.
T Consensus 698 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~i~~~~~ 768 (1321)
T 4f4c_A 698 RSSTIGSITNGPVIDE-KEERIGKDALSRLKQELEENNAQKTNLFEIL--------YHARPHALSLFIGMSTATIGGFIY 768 (1321)
T ss_dssp -------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHH--------HHTGGGHHHHHHHHHHHHHGGGHH
T ss_pred HCCCCCCCCCCCCHHH-HHHHCCCHHHHHHHHHHHHCCCCCEEHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0132124567740257-7753154038999999997078631099999--------998778999999999999999999
Q ss_pred H--HHHH----CC--CCCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--------HHHHHHHH--HCCCCCC--
Q ss_conf 9--9871----44--5776542013355799999999--99956779999884--------34668873--2144235--
Q 000517 557 M--TVFL----RT--RMEIDVFHGNYYMGSLYFSLVV--LLVDGMPELSMTIQ--------RLEVFYKQ--QELCFYP-- 614 (1449)
Q Consensus 557 g--t~f~----~~--~~~~~~~~~~~~~g~lff~~~~--~~~~~~~~~~~~~~--------~~~vf~kq--r~~~~y~-- 614 (1449)
. .+++ .. ..+.+......+...+|..+.. ..+........... +...|.+- ....|+.
T Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~ 848 (1321)
T 4f4c_A 769 PTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSP 848 (1321)
T ss_dssp HHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSG
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCC
T ss_conf 99999999999875179345566789999999999999999999999999999999999999999888734993332167
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf --677999899987119999999998888762388621889999999999999999999999998405878899999999
Q 000517 615 --AWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVV 692 (1449)
Q Consensus 615 --~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~l~l~~~~~~s~f~~iaa~~~~~~~A~~~~~~~ 692 (1449)
+..-.+.....++.. +-.+-+ ..+..++..++. ..+.++..+..+...+... +.
T Consensus 849 ~~~~G~i~~r~s~D~~~--------------i~~~l~---~~l~~~~~~~~~-----~i~~~~~~~~~~~~l~lv~--l~ 904 (1321)
T 4f4c_A 849 QNASGKISTRLATDVPN--------------LRTAID---FRFSTVITTLVS-----MVAGIGLAFFYGWQMALLI--IA 904 (1321)
T ss_dssp GGCHHHHHHHHHTHHHH--------------HHTTTS---HHHHHHHHHHHH-----HHHHHHHHHHHCHHHHHHH--HH
T ss_pred CCCHHHHHHCCHHHHHH--------------HHHHHH---HHHHHHHHHHHH-----HHHHEEEEHHHHHHHHHHH--HH
T ss_conf 88848888502505999--------------999999---999999998653-----7777022137868999999--99
Q ss_pred HHHHHHHHHCCC----CCCCHHHHHHHHHHHCHHHHHHHHH---HH-HHHCCC-----CCCCCCCCCCCCHHHHHCCCCC
Q ss_conf 999998653033----6998367999999683888999999---98-840587-----5443488875401245213786
Q 000517 693 ILFVFLFGGFVI----SRPSMPAWLKWGFWISPVTYGEIGL---SV-NEFLAP-----RWQKMLPTNTTIGQEILESRGL 759 (1449)
Q Consensus 693 ~l~~~l~~Gf~i----~~~~ip~~~~W~~~isp~~ya~~al---~~-nef~~~-----~~~~~~~~~~~~G~~~L~~~g~ 759 (1449)
+++++++..++. ........- ..-....+..+++ .. .-|... ++..... ..-....+..
T Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~---~~~~~~~~~~-- 976 (1321)
T 4f4c_A 905 ILPIVAFGQYLRGRRFTGKNVKSAS---EFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLD---IPHKEAIKEA-- 976 (1321)
T ss_dssp HHHHHHHHHHHHTSCCSSCSTTTSS---HHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHH---HHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HHHHHHHHHH--
T ss_conf 8889999999999999999999999---9888988999999627988861414889999999999---9999999999--
Q ss_pred CCCCCHHHHH-HHHHHHHHHHHHHH------------------HHHHHHHC-CCCCCC--------CCCCCHHHHHHHCC
Q ss_conf 5455046789-99999999999999------------------99998830-435898--------53211555532101
Q 000517 760 NFDGFIFWIS-LGALFGIALLLNIG------------------FTLALTFL-KSSGSS--------RVMISHEKLAKMQE 811 (1449)
Q Consensus 760 ~~~~~~~w~~-~g~l~g~~i~f~il------------------~~l~l~~~-~~~~~~--------~~~~s~~~~~~~~~ 811 (1449)
.....+.+.. ....+...+.+.+. ...++... .+.... +...+.++..+...
T Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~ 1056 (1321)
T 4f4c_A 977 FIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLR 1056 (1321)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999998757887537654214789999999987788999999999999999999998999860
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCHHCCCCCCCCCEEECCCEEEEECCEEEE
Q ss_conf 35688898765677898888765546875556777078984450133043101002545565323002035773782999
Q 000517 812 SEDSSYGEPVKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTA 891 (1449)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~a 891 (1449)
.. .+... . . .....++ ....+.|+|++++++.. ....+|+|||+.++|||.+|
T Consensus 1057 ~~----~~~~~-~--~---~~~~~~~-------~~g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~va 1109 (1321)
T 4f4c_A 1057 KI----SKIDS-L--S---LAGEKKK-------LYGKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLA 1109 (1321)
T ss_dssp CC----CSSCT-T--C---CCSBCCC-------CCCCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEE
T ss_pred CC----CCCCC-C--C---CCCCCCC-------CCCEEEEEEEEEECCCC----------CCCCCCCCEEEEECCCCEEE
T ss_conf 76----65777-6--6---7787888-------88818999879857999----------98821245169988989999
Q ss_pred EECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 96579997447984240997787047899996922740---001334899704888899998999999999830499999
Q 000517 892 LMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEIN 968 (1449)
Q Consensus 892 i~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~~~---~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~ 968 (1449)
|+|+||||||||+++|.|...+ .+|+|.+||.+..+ ..+|+.++||+|++.++ +-|++||+.|+. -|.+.+
T Consensus 1110 IVG~SGsGKSTL~~lL~rl~~p--~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF-~gTIreNI~~gl---d~~~~s 1183 (1321)
T 4f4c_A 1110 LVGPSGCGKSTVVALLERFYDT--LGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLF-DCSIAENIIYGL---DPSSVT 1183 (1321)
T ss_dssp EECSTTSSTTSHHHHHTTSSCC--SSSEEEETTEETTTBCHHHHHTTEEEECSSCCCC-SEEHHHHHSSSS---CTTTSC
T ss_pred EECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEE-CCCHHHHHHCCC---CCCCCC
T ss_conf 9899998199999999568638--9978999999865499999985459987899732-723999974549---999999
Q ss_pred HHHHHHHHHHHHHHCCCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 578999999999983994-------2112224688888789999999999999961997889939999999999999999
Q 000517 969 SKTKAEFVNEVLETIELD-------AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMR 1041 (1449)
Q Consensus 969 ~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~~~~gLSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~~~~~i~~ 1041 (1449)
++.++++++..++. +-.|+.||..|. .||||||||++|||+|+++|+||+||||||+||+.+...|++
T Consensus 1184 ----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~-~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~ 1258 (1321)
T 4f4c_A 1184 ----MAQVEEAARLANIHNFIAELPEGFETRVGDRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQE 1258 (1321)
T ss_dssp ----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSC-SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHH
T ss_pred ----HHHHHHHHHHHCCHHHHHCCCCCCCCEECCCCC-CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf ----999999999829849997176789998238891-569999999999999971799899968111578999999999
Q ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCHHHHHH
Q ss_conf 999999669989999358529999860839899069599994488888157999
Q 000517 1042 AVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQVIE 1095 (1449)
Q Consensus 1042 ~l~~l~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~~~~~~~~~~ 1095 (1449)
.|++.. +|+|+|+++|+++. ...+|++++|. +|+++.+|+. .++++
T Consensus 1259 ~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld-~G~IvE~Gth----~eLl~ 1304 (1321)
T 4f4c_A 1259 ALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVS-NGTIIEKGTH----TQLMS 1304 (1321)
T ss_dssp HHTTTS-SSSEEEEECSSSST--TTTCSEEEEES-SSSEEEEECH----HHHHH
T ss_pred HHHHHC-CCCEEEEECCCHHH--HHHCCEEEEEE-CCEEEEECCH----HHHHH
T ss_conf 999973-99989996068999--99699999998-9899998888----99984
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=593.66 Aligned_cols=772 Identities=19% Similarity=0.221 Sum_probs=371.9
Q ss_pred CCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCC
Q ss_conf 321224156883873999976999947999999929999999701099998850788889---95189975788668899
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 184 ~~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~---~~~~aYV~Q~D~h~~~l 260 (1449)
.++|+|+|+.++||+.++|+||||||||||+++|+|.++|+ +|+|.++|.++.+..+ ++.++||+|+..+++ .
T Consensus 403 ~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ 478 (1284)
T 3g5u_A 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA-T 478 (1284)
T ss_dssp CCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCS-S
T ss_pred CCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCC-C
T ss_conf 71012545897599889998999997999999980788999---7389999998775799999865489868875377-6
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999988029998223556720998862999997968999998631000121299999990997534532346445
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TVrEtL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~ 340 (1449)
||+||+.|+.. +.+.++..+++..++.. +. +..|++..||.||+..
T Consensus 479 ti~eNi~~g~~-------------------------~~~~~~~~~~~~~~~~~-----~~---i~~l~~g~~t~~~~~g- 524 (1284)
T 3g5u_A 479 TIAENIRYGRE-------------------------DVTMDEIEKAVKEANAY-----DF---IMKLPHQFDTLVGERG- 524 (1284)
T ss_dssp CHHHHHHHHCS-------------------------SCCHHHHHHHHHHTTCH-----HH---HHHSTTGGGCCCSSSS-
T ss_pred CHHHHHHCCCC-------------------------CCCHHHHHHHHHHHCCH-----HH---HHHCCCCCCCCCCCCC-
T ss_conf 69999745798-------------------------99999999999982969-----99---9746563345014787-
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEEEEECC
Q ss_conf 56773233159999999189949899689999999999999999999987179689999825900488522719998189
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGLSGGQKKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~IilL~~G 420 (1449)
..||||||||++||++++.+|++++|||||++||+.+...|.+.++.+. .++|+|+..|. .++...+|+|++|.+|
T Consensus 525 ~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~--l~~i~~~d~i~vl~~G 600 (1284)
T 3g5u_A 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAHR--LSTVRNADVIAGFDGG 600 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECSC--HHHHTTCSEEEECSSS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECC--HHHHHCCCEEEEEECC
T ss_conf 8659999999999999952999899979877779999999999999973--99989999407--7899749989999899
Q ss_pred EEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHH--HHH--CCCCCCCCCCCHHHHHHH-HHCCHHHHHHHH
Q ss_conf 499945955599998855998899999245898721802243--321--025899766798789999-830932574799
Q 000517 421 KIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQA--QFW--LHTELPYSYFSVDMFSKK-FKESPLVKKLDE 495 (1449)
Q Consensus 421 ~ivy~Gp~~~~~~~Fe~lGf~cp~~~~~adfl~ev~s~~~~~--~~~--~~~~~~~~~~s~~~f~~~-~~~s~~~~~~~~ 495 (1449)
+++++|+++++++- .|. ..+.+.......+.. ... .................. .+..........
T Consensus 601 ~i~~~g~~~~l~~~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1284)
T 3g5u_A 601 VIVEQGNHDELMRE---KGI-------YFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICG 670 (1284)
T ss_dssp CCCCEECHHHHHHT---TSH-------HHHHHHHTC--------------------------------------------
T ss_pred EEEEECCHHHHHHC---CCH-------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99997889999867---877-------99999974300221113333332222234433333333200034543334456
Q ss_pred --HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-------HHHHHH---HHHCC
Q ss_conf --732756688999776666754564999999999999999860638999999999999-------999999---87144
Q 000517 496 --ELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIML-------ATMAMT---VFLRT 563 (1449)
Q Consensus 496 --~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~ii~-------ali~gt---~f~~~ 563 (1449)
........... ........+.+..++. .++.+..+...++..++. +.+.+. .+...
T Consensus 671 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 738 (1284)
T 3g5u_A 671 PHDQDRKLSTKEA----LDEDVPPASFWRILKL--------NSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNG 738 (1284)
T ss_dssp -----------------CCCCCSCCCTTHHHHH--------HHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCHHHH----HHCCCCCHHHHHHHHH--------HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 4223321102455----5313662589999998--------451579999999999999999999999999999998556
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH--HHHH
Q ss_conf 57765420133557999999999--9956779999884346688732144235677999899987119999999--9988
Q 000517 564 RMEIDVFHGNYYMGSLYFSLVVL--LVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASL--AWTC 639 (1449)
Q Consensus 564 ~~~~~~~~~~~~~g~lff~~~~~--~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~l~~~l~~iP~~~~~~~--i~~~ 639 (1449)
...............++..+... .+...............-.+-|. -+-..+...|+.++..- --.-
T Consensus 739 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~---------~l~~~ll~~~~~ff~~~~~~~G~ 809 (1284)
T 3g5u_A 739 GPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRY---------MVFKSMLRQDVSWFDDPKNTTGA 809 (1284)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHCCSHHHHSCSCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHCCCHHHHCCCCCCHHH
T ss_conf 850336779999999999999999999999999999999999999999---------99999983998887578998899
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 88762388621889999999999999999999999998405878899999999999998653033699836799999968
Q 000517 640 LTYYVIGYSPEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWI 719 (1449)
Q Consensus 640 i~Y~~~g~~~~~~~f~~~~l~l~l~~~~~~s~f~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~i 719 (1449)
+..-+..-......++...+..++...... ...++..+.-++..+.. .++.++++++.+++. ..++
T Consensus 810 l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~-~~~~i~~~~~~~~l~lv--~l~~~p~~~~~~~~~-----------~~~~ 875 (1284)
T 3g5u_A 810 LTTRLANDAAQVKGATGSRLAVIFQNIANL-GTGIIISLIYGWQLTLL--LLAIVPIIAIAGVVE-----------MKML 875 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSSCSSSHHH--HHHHHHHHHHHHHHH-----------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-----------HHHH
T ss_conf 999999999999999999999999999999-99999999996999999--999999999999999-----------9999
Q ss_pred CHH------HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCC-------CCHHHHHHH--H-----HHHHHHH
Q ss_conf 388------8999999988405875443488875401245213786545-------504678999--9-----9999999
Q 000517 720 SPV------TYGEIGLSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFD-------GFIFWISLG--A-----LFGIALL 779 (1449)
Q Consensus 720 sp~------~ya~~al~~nef~~~~~~~~~~~~~~~G~~~L~~~g~~~~-------~~~~w~~~g--~-----l~g~~i~ 779 (1449)
... .+...+-...|....-..... ........+.+.-... ....|.+.. . .+.+.+.
T Consensus 876 ~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a---~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1284)
T 3g5u_A 876 SGQALKDKKELEGSGKIATEAIENFRTVVS---LTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAA 952 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCTTTTT---CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999988999998---46599999999999999999999999999999999999999999999
Q ss_pred H---------------------H--HHHHHHHHHCCC--CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9---------------------9--999999883043--58985321155553210135688898765677898888765
Q 000517 780 L---------------------N--IGFTLALTFLKS--SGSSRVMISHEKLAKMQESEDSSYGEPVKENSRSTPMTNKE 834 (1449)
Q Consensus 780 f---------------------~--il~~l~l~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1449)
+ . ......+..+.. ....+...+.++..+..... ..... . . ....
T Consensus 953 ~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~----~~~~~-~--~---~~~~ 1022 (1284)
T 3g5u_A 953 FRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKT----PEIDS-Y--S---TQGL 1022 (1284)
T ss_dssp HHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSC----CSSSS-C--C---SSCC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCC-C--C---CCCC
T ss_conf 99999999909806999999999999999999999999999999999999999998388----76666-5--5---5665
Q ss_pred CCCCCCCCCCCCCEEEEECCEEEEECCCCHHCCCCCCCCCEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCC
Q ss_conf 54687555677707898445013304310100254556532300203577378299996579997447984240997787
Q 000517 835 SYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG 914 (1449)
Q Consensus 835 ~~~~~~~l~~~~~~~~~~~l~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~ 914 (1449)
. .+.....+.++|+++.++.. ....+|+|+|+.++|||++||+|+||||||||+++|+|...+
T Consensus 1023 -~-----~~~~~g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p- 1085 (1284)
T 3g5u_A 1023 -K-----PNMLEGNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP- 1085 (1284)
T ss_dssp -C-----TTTTSCCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC-
T ss_pred -C-----CCCCCCCEEEEEEEEECCCC----------CCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC-
T ss_conf -4-----56777857999989977999----------987002030599769988999889999789999999468678-
Q ss_pred EEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC-------
Q ss_conf 047899996922740---0013348997048888999989999999998304999995789999999999839-------
Q 000517 915 YVEGEIKISGYPKVQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE------- 984 (1449)
Q Consensus 915 ~~~G~i~i~g~~~~~---~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~------- 984 (1449)
.+|+|.+||.+... ..+++.++||+|+..+ ...||+|++.+.... ...+.+ .+++.++..+
T Consensus 1086 -~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-~~~ti~eNi~~~~~~---~~~~~~----~i~~~~~~~~~~~~i~~ 1156 (1284)
T 3g5u_A 1086 -MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPIL-FDCSIAENIAYGDNS---RVVSYE----EIVRAAKEANIHQFIDS 1156 (1284)
T ss_dssp -SEEEEESSSSCTTSSCHHHHTTSCEEEESSCCC-CSSBHHHHHTCCCSS---CCCCHH----HHHHHHHHHTCHHHHSS
T ss_pred -CCCEEEECCEECCCCCHHHHHHCEEEECCCCCC-CCCCHHHHHHCCCCC---CCCCHH----HHHHHHHHHCCHHHHHH
T ss_conf -997798999980007899997026898778740-666699997466877---899999----99999998395999972
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH
Q ss_conf 94211222468888878999999999999996199788993999999999999999999999966998999935852999
Q 000517 985 LDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDI 1064 (1449)
Q Consensus 985 L~~~~~~~vg~~~~~gLSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i 1064 (1449)
+.+-.|+.+|..|. .||||||||++|||+|+.+|+||+|||||+|||..+...|++.+++. ..|+|+|+++|+++. +
T Consensus 1157 l~~gldt~vge~G~-~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i 1233 (1284)
T 3g5u_A 1157 LPDKYNTRVGDKGT-QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I 1233 (1284)
T ss_dssp TTTGGGCBCSTTSC-SSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G
T ss_pred CCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHH-H
T ss_conf 70424561178889-33899999999999997499999986875557999999999999986-799989999558799-9
Q ss_pred HHHCCEEEEEECCCEEEEECCC
Q ss_conf 9860839899069599994488
Q 000517 1065 FEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1065 ~~~fD~illl~~gG~~~y~G~~ 1086 (1449)
..+|++++|. +|+++..|+.
T Consensus 1234 -~~~dri~vl~-~G~i~~~g~~ 1253 (1284)
T 3g5u_A 1234 -QNADLIVVIQ-NGKVKEHGTH 1253 (1284)
T ss_dssp -GSCSEEEEEE-TBEEEEEECH
T ss_pred -HCCCEEEEEE-CCEEEEECCH
T ss_conf -8099899998-9989997789
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=456.61 Aligned_cols=436 Identities=23% Similarity=0.285 Sum_probs=310.9
Q ss_pred CCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 21224156883873999976999947999999929999999701099---------9988507888-----899518997
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEV---------SYNGYKLEEF-----VPPKTSAYI 250 (1449)
Q Consensus 185 ~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V---------~~nG~~~~~~-----~~~~~~aYV 250 (1449)
.+|+|+| .+++|+.++|+|||||||||||++|+|.+.|+ +|++ .++|.++... ..+..++|+
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred EEECCCC-CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHEECCEEHHHHHHHHHHHHCCEEEE
T ss_conf 4048989-88989999999999972999999985799878---7854666301331368776134323455653446886
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCC
Q ss_conf 57886688---999999999998802999822355672099886299999796899999863100012129999999099
Q 000517 251 SQNDLHIA---EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGL 327 (1449)
Q Consensus 251 ~Q~D~h~~---~lTVrEtL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL 327 (1449)
+|.....+ ..||+|++.... ....++.+++.+||
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~~-------------------------------------------~~~~~~~~L~~lgL 218 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKVD-------------------------------------------EVGKFEEVVKELEL 218 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHTC-------------------------------------------CSSCHHHHHHHTTC
T ss_pred ECHHHHCHHHCCCCHHHHHHHHH-------------------------------------------HHHHHHHHHHHCCC
T ss_conf 32043130220050999963167-------------------------------------------99999999997599
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHH
Q ss_conf 75345323464455677323315999999918994989968999999999999999999998717968999982590048
Q 000517 328 DVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPET 407 (1449)
Q Consensus 328 ~~~~dT~VG~~~~rGLSGGQKKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei 407 (1449)
++..|..+++ |||||||||.||++|+.+|++|+|||||+|||..++.++++.|+++.+ .+.|+|++.|. ..++
T Consensus 219 ~~~~~~~~~~-----LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHd-l~~~ 291 (607)
T 3bk7_A 219 ENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHD-LAVL 291 (607)
T ss_dssp TTGGGSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSC-HHHH
T ss_pred CCHHCCCHHH-----CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECC-HHHH
T ss_conf 7043798056-----999999999999998459999999797435899999999999999986-69989999648-5898
Q ss_pred HHHCCEEEEEECCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 85227199981894999459555999988559988999992458987218022433210258997667987899998309
Q 000517 408 FDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKES 487 (1449)
Q Consensus 408 ~~lFD~IilL~~G~ivy~Gp~~~~~~~Fe~lGf~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~s~~~f~~~~~~s 487 (1449)
..++|+|++|.++...| |. + ..+
T Consensus 292 ~~~adri~vl~~~~~~~-g~------------------------------------~----~~~---------------- 314 (607)
T 3bk7_A 292 DYLSDVIHVVYGEPGVY-GI------------------------------------F----SKP---------------- 314 (607)
T ss_dssp HHHCSEEEEEESCTTTE-EE------------------------------------E----CCC----------------
T ss_pred HHHCCEEEEECCCCCCC-CE------------------------------------E----CCC----------------
T ss_conf 86589999977986445-21------------------------------------2----241----------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 32574799732756688999776666754564999999999999999860638999999999999999999871445776
Q 000517 488 PLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEI 567 (1449)
Q Consensus 488 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~ii~ali~gt~f~~~~~~~ 567 (1449)
+. .++... .+.
T Consensus 315 ----------------------------~~-----------~~~~i~------------------------~~~------ 325 (607)
T 3bk7_A 315 ----------------------------KG-----------TRNGIN------------------------EFL------ 325 (607)
T ss_dssp ----------------------------EE-----------HHHHHH------------------------HHH------
T ss_pred ----------------------------HH-----------HHHHHH------------------------HHH------
T ss_conf ----------------------------32-----------799999------------------------997------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 54201335579999999999956779999884346688732144235677999899987119999999998888762388
Q 000517 568 DVFHGNYYMGSLYFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGY 647 (1449)
Q Consensus 568 ~~~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~ 647 (1449)
T Consensus 326 -------------------------------------------------------------------------------- 325 (607)
T 3bk7_A 326 -------------------------------------------------------------------------------- 325 (607)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHH
Q ss_conf 62188999999999999999999999999840587889999999999999865303369983679999996838889999
Q 000517 648 SPEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEI 727 (1449)
Q Consensus 648 ~~~~~~f~~~~l~l~l~~~~~~s~f~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~ya~~ 727 (1449)
.|+.. ..++
T Consensus 326 ----------------------------------------------------~~~~~-~~~~------------------ 334 (607)
T 3bk7_A 326 ----------------------------------------------------QGYLK-DENV------------------ 334 (607)
T ss_dssp ----------------------------------------------------HTEET-TTTE------------------
T ss_pred ----------------------------------------------------HHCCH-HHHH------------------
T ss_conf ----------------------------------------------------51013-4554------------------
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 99988405875443488875401245213786545504678999999999999999999988304358985321155553
Q 000517 728 GLSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLA 807 (1449)
Q Consensus 728 al~~nef~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~g~~i~f~il~~l~l~~~~~~~~~~~~~s~~~~~ 807 (1449)
+.. . ..
T Consensus 335 ----------~~~----------------------------------------------------~--~~---------- 340 (607)
T 3bk7_A 335 ----------RFR----------------------------------------------------P--YE---------- 340 (607)
T ss_dssp ----------ECC----------------------------------------------------S--SC----------
T ss_pred ----------HCC----------------------------------------------------C--CC----------
T ss_conf ----------301----------------------------------------------------2--12----------
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCHHCCCCCCCCCEEECCCEEEEECC
Q ss_conf 21013568889876567789888876554687555677707898445013304310100254556532300203577378
Q 000517 808 KMQESEDSSYGEPVKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPG 887 (1449)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~G 887 (1449)
.... . . .... . ......+.++|+++... . ..|+++++.+++|
T Consensus 341 ----------~~~~--~--~---~~~~-~------~~~~~~l~~~~l~~~~~-------------~-~~l~~~~~~v~~G 382 (607)
T 3bk7_A 341 ----------IRFT--K--L---SERV-D------VERETLVEYPRLVKDYG-------------S-FKLEVEPGEIRKG 382 (607)
T ss_dssp ----------CCCC--C--S---TTSC-C------CCCCEEEEECCEEEECS-------------S-CEEEECCEEEETT
T ss_pred ----------CCCC--C--C---CCCC-C------CCCCEEEEEECEEEEEC-------------C-EEEEECCCCCCCC
T ss_conf ----------3456--5--7---7754-4------46752899913098744-------------3-4899351532799
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 29999657999744798424099778704789999692274000133489970488889999899999999983049999
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEI 967 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~ 967 (1449)
|++||+|+||||||||+++|+|...+ .+|+|.+ .+.++|++|+....+.+||.|++........
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~---- 446 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----------DLTVAYKPQYIKAEYEGTVYELLSKIDSSKL---- 446 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH----
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----------EEEEEEEECCCCCCCCCCHHHHHHHHHCCCC----
T ss_conf 89999999998999999999669888--8628999----------0279998057667789849999975312587----
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 95789999999999839942112224688888789999999999999961997889939999999999999999999999
Q 000517 968 NSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV 1047 (1449)
Q Consensus 968 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~gLSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~l~ 1047 (1449)
...+.++++++.++|.+..+..++ .||||||||+.||++|+.+|++|+|||||+|||..+...+++.|++++
T Consensus 447 ---~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~ 518 (607)
T 3bk7_A 447 ---NSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 518 (607)
T ss_dssp ---HCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHCCCCHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf ---789999999987699337549922-----379999999999999974899899968744789999999999999999
Q ss_pred H-CCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCC
Q ss_conf 6-6998999935852999986083989906-959999448888
Q 000517 1048 N-TGRTIVCTIHQPSIDIFEAFDELILLKT-GGRIIYCGPLGK 1088 (1449)
Q Consensus 1048 ~-~g~tvi~t~Hqps~~i~~~fD~illl~~-gG~~~y~G~~~~ 1088 (1449)
+ .|.|||+++|++. ++...+|++++|.. .|+.+..|++.+
T Consensus 519 ~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 519 EKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp HHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHCCCEEEEEECCHH-HHHHHCCEEEEECCCCCEEEECCCHHH
T ss_conf 747989999909899-999869999999598306974289899
No 4
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=449.62 Aligned_cols=215 Identities=20% Similarity=0.285 Sum_probs=155.4
Q ss_pred CCCCCCCEEEEEECCEEEEEECCCCCCHHHHH---------------------HHHHCCCCCCCC----EEEEEEECCCC
Q ss_conf 33212241568838739999769999479999---------------------999299999997----01099998850
Q 000517 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFL---------------------KALSGNLDPSLK----VTGEVSYNGYK 237 (1449)
Q Consensus 183 ~~~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL---------------------~aLaG~l~~~~~----~sG~V~~nG~~ 237 (1449)
+.++|+|||+.+++|++++|+||||||||||+ +.+.|...++.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCH
T ss_conf 76402343899879989999899999988871510123211100011002445553034567756321356415744720
Q ss_pred CCCCCCCCEEEEECCCCC-------------------CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCC
Q ss_conf 788889951899757886-------------------6889999999999988029998223556720998862999997
Q 000517 238 LEEFVPPKTSAYISQNDL-------------------HIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDP 298 (1449)
Q Consensus 238 ~~~~~~~~~~aYV~Q~D~-------------------h~~~lTVrEtL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~ 298 (1449)
.... +++.++||+|... .++.+||+|++.+........ .++.. ...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~-----------~~~~~---~~~ 174 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTE-----------KEAQI---ARL 174 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred HHCC-CHHCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCH-----------HHHHH---HHH
T ss_conf 1025-50000465112566777775311112344433345785999999752036431-----------45677---888
Q ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCCCCH
Q ss_conf 96899999863100012129999999099753-45323464455677323315999999918994--9899689999999
Q 000517 299 DIDTYMKAISVKGVKRTLQTDYILKILGLDVC-ADTMVGNAMRRGISGGQKKRLTTGEMIVGPTK--ALFMDEITNGLDS 375 (1449)
Q Consensus 299 d~d~~~~~~~~~~~~~~~~~d~il~~LGL~~~-~dT~VG~~~~rGLSGGQKKRvsiaeaLv~~~~--vlllDEpTsGLDS 375 (1449)
..++ -...-.+++.+||++. .|..+++ |||||||||.||++|+.+|+ +|+|||||+|||+
T Consensus 175 ~~~~------------~~~~~~~l~~~gL~~~~~~~~~~~-----LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 175 ILRE------------IRDRLGFLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ----------------CHHHHHHHHHTTCTTCCTTCBGGG-----SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred HHHH------------HHHHHHHHHHCCCCHHHHCCCCCC-----CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf 8999------------999998999759843441497001-----89999999999999962899878999798568999
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEEEE------ECCEEEEECCHHHHH
Q ss_conf 999999999999987179689999825900488522719998------189499945955599
Q 000517 376 STAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILM------AEGKIVYHGPQDHVL 432 (1449)
Q Consensus 376 ~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~IilL------~~G~ivy~Gp~~~~~ 432 (1449)
.+..++++.|+++.. .+.|+|++.|.. +....+|+|++| .+|++++.|+.+++.
T Consensus 238 ~~~~~l~~~l~~l~~-~g~tvi~vtHd~--~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-LGNTLIVVEHDE--DTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH-TTCEEEEECCCH--HHHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEECCH--HHHHHCCEEEEECCCCCCCCCEEEEECCHHHHH
T ss_conf 999999999999997-499899995787--999629989994466656698899740899986
No 5
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=447.65 Aligned_cols=427 Identities=22% Similarity=0.279 Sum_probs=302.3
Q ss_pred CCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCC-CCCCCCCCH
Q ss_conf 3212241568838739999769999479999999299999997010999988507888899518997578-866889999
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQN-DLHIAEMTV 262 (1449)
Q Consensus 184 ~~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~~~~~aYV~Q~-D~h~~~lTV 262 (1449)
..+|+|+|+.+++|+.++|+|||||||||||++|+| |+| +|.+... +...+|++|+ +..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC---------CCC--CCCCCCC---CEEEEEECCCCCCCCCCCCH
T ss_conf 876741269981897899999999879999999948---------986--7976635---41699973564324557809
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCC-CCCCCCCCCCCCC
Q ss_conf 999999988029998223556720998862999997968999998631000121299999990997-5345323464455
Q 000517 263 RETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD-VCADTMVGNAMRR 341 (1449)
Q Consensus 263 rEtL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL~-~~~dT~VG~~~~r 341 (1449)
.|++.+ ...+ . + ..++.+++.+||+ ...+..+++
T Consensus 514 ~e~l~~--~~~~----------~--~---------------------------~~v~~~L~~lgL~~~~~~~~~~~---- 548 (986)
T 2iw3_A 514 LDFVFE--SGVG----------T--K---------------------------EAIKDKLIEFGFTDEMIAMPISA---- 548 (986)
T ss_dssp HHHHHT--TCSS----------C--H---------------------------HHHHHHHHHTTCCHHHHHSBGGG----
T ss_pred HHHHHH--HHCC----------H--H---------------------------HHHHHHHHHCCCCHHHHCCCCCC----
T ss_conf 999998--6127----------9--9---------------------------99999999869984464398020----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEEEEECCE
Q ss_conf 67732331599999991899498996899999999999999999999871796899998259004885227199981894
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GLSGGQKKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~IilL~~G~ 421 (1449)
||||||||+.||++++.+|++++|||||+|||..+...+.+.|++ .+.|+|++.|. ..++.+++|+|++|.+|+
T Consensus 549 -LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHd-l~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 549 -LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHD-SVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSC-HHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEEECC-HHHHHHHCCEEEEEECCE
T ss_conf -799999999999999649999999797667999999999999986----79989999798-899998689999997994
Q ss_pred EE-EECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf 99-94595559999885599889999924589872180224332102589976679878999983093257479973275
Q 000517 422 IV-YHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELLVP 500 (1449)
Q Consensus 422 iv-y~Gp~~~~~~~Fe~lGf~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~s~~~f~~~~~~s~~~~~~~~~l~~~ 500 (1449)
++ |.|+.+++.... + ....+
T Consensus 623 iv~~~G~~~e~~~~~----------------------~-~~~~~------------------------------------ 643 (986)
T 2iw3_A 623 LRKYKGNFTEFVKKC----------------------P-AAKAY------------------------------------ 643 (986)
T ss_dssp EEEEESCHHHHHHHC----------------------G-GGGGS------------------------------------
T ss_pred EECCCCCHHHHHHHH----------------------H-HHHHH------------------------------------
T ss_conf 426779999998614----------------------8-89999------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 66889997766667545649999999999999998606389999999999999999998714457765420133557999
Q 000517 501 YDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLY 580 (1449)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~ii~ali~gt~f~~~~~~~~~~~~~~~~g~lf 580 (1449)
+ .+.....
T Consensus 644 ---------------~-----------------------------------------------~l~~~~~---------- 651 (986)
T 2iw3_A 644 ---------------E-----------------------------------------------ELSNTDL---------- 651 (986)
T ss_dssp ---------------S-----------------------------------------------STTTCCC----------
T ss_pred ---------------H-----------------------------------------------HHHHHHH----------
T ss_conf ---------------8-----------------------------------------------6445443----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99999999567799998843466887321442356779998999871199999999988887623886218899999999
Q 000517 581 FSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQFIL 660 (1449)
Q Consensus 581 f~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~ 660 (1449)
.+
T Consensus 652 ------------------------------~~------------------------------------------------ 653 (986)
T 2iw3_A 652 ------------------------------EF------------------------------------------------ 653 (986)
T ss_dssp ------------------------------CC------------------------------------------------
T ss_pred ------------------------------HC------------------------------------------------
T ss_conf ------------------------------20------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999998405878899999999999998653033699836799999968388899999998840587544
Q 000517 661 LFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGLSVNEFLAPRWQ 740 (1449)
Q Consensus 661 l~l~~~~~~s~f~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~ 740 (1449)
.+.
T Consensus 654 -----------------------------------------------------------------------------~~p 656 (986)
T 2iw3_A 654 -----------------------------------------------------------------------------KFP 656 (986)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred -----------------------------------------------------------------------------CCC
T ss_conf -----------------------------------------------------------------------------356
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 34888754012452137865455046789999999999999999999883043589853211555532101356888987
Q 000517 741 KMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEP 820 (1449)
Q Consensus 741 ~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~g~~i~f~il~~l~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 820 (1449)
. .
T Consensus 657 --~----------------------------------------------------------------------------~ 658 (986)
T 2iw3_A 657 --E----------------------------------------------------------------------------P 658 (986)
T ss_dssp --C----------------------------------------------------------------------------C
T ss_pred --C----------------------------------------------------------------------------C
T ss_conf --5----------------------------------------------------------------------------5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCHHCCCCCCCCCEEECCCEEEEECCEEEEEECCCCCCH
Q ss_conf 65677898888765546875556777078984450133043101002545565323002035773782999965799974
Q 000517 821 VKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGK 900 (1449)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGK 900 (1449)
. . . ... ... ....+.++|+++..+. ..+.+|+|+|+.+++|+++||+|+|||||
T Consensus 659 ~--~--~---~~~-~~~-------~~~mL~v~nLs~~Y~g-----------~~~~iL~dVSl~I~~GeivaIiGpNGSGK 712 (986)
T 2iw3_A 659 G--Y--L---EGV-KTK-------QKAIVKVTNMEFQYPG-----------TSKPQITDINFQCSLSSRIAVIGPNGAGK 712 (986)
T ss_dssp C--C--C---TTC-CST-------TSEEEEEEEEEECCTT-----------CSSCSEEEEEEEEETTCEEEECSCCCHHH
T ss_pred C--C--C---CCC-CCC-------CCCEEEEEEEEEEECC-----------CCCEEEECCEEEECCCCEEEEECCCCCCH
T ss_conf 5--4--3---345-667-------8706999846998189-----------87413432279982897899989999879
Q ss_pred HHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCC----CCCCCHHHHHHHHHHHC------------CC
Q ss_conf 479842409977870478999969227400013348997048888----99998999999999830------------49
Q 000517 901 TTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIH----SPNITVEESVIFSAWLR------------LA 964 (1449)
Q Consensus 901 TTLl~~Lagr~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~----~~~lTv~E~l~f~a~lr------------~~ 964 (1449)
|||+++|+|...+ .+|+|.++|.. .++|++|+..+ ....|++|.+.+.-... ..
T Consensus 713 STLLklLaGll~P--~sG~I~~~~~~--------~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~ 782 (986)
T 2iw3_A 713 STLINVLTGELLP--TSGEVYTHENC--------RIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQIN 782 (986)
T ss_dssp HHHHHHHTTSSCC--SEEEEEECTTC--------CEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCC
T ss_pred HHHHHHHHCCCCC--CCEEEEECCCC--------CEEEECCCHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCC
T ss_conf 9999999579888--86089986864--------2576313024332100114799998877504502555543321034
Q ss_pred ----------------------------------------------------C---------------------------
Q ss_conf ----------------------------------------------------9---------------------------
Q 000517 965 ----------------------------------------------------P--------------------------- 965 (1449)
Q Consensus 965 ----------------------------------------------------~--------------------------- 965 (1449)
.
T Consensus 783 ~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d 862 (986)
T 2iw3_A 783 ENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVD 862 (986)
T ss_dssp SSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 35554420001123201234444555431222002100025543200000123432344321016777666766554432
Q ss_pred -------CCCHHHHHHHHHHHHHHCCCCC-C-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHH
Q ss_conf -------9995789999999999839942-1-122246888887899999999999999619978899399999999999
Q 000517 966 -------EINSKTKAEFVNEVLETIELDA-I-KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 1036 (1449)
Q Consensus 966 -------~~~~~~~~~~v~~~l~~l~L~~-~-~~~~vg~~~~~gLSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~~~ 1036 (1449)
.......++.++++++.+||.+ . .+..++ .||||||||+.||++|+.+|++|+|||||+|||..+.
T Consensus 863 ~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~-----~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~ 937 (986)
T 2iw3_A 863 MKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIR-----GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSL 937 (986)
T ss_dssp HHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGG-----GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCC-----CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHH
T ss_conf 45554302232347999999999769980544489804-----2399999999999999839999999798657799999
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECC
Q ss_conf 9999999999966998999935852999986083989906959999448
Q 000517 1037 AIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085 (1449)
Q Consensus 1037 ~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~ 1085 (1449)
..+++.++++ +.|||+++|++. .+...+|++++|. +|+++..|+
T Consensus 938 ~~L~~~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~-~G~Iv~~G~ 981 (986)
T 2iw3_A 938 GALSKALKEF---EGGVIIITHSAE-FTKNLTEEVWAVK-DGRMTPSGH 981 (986)
T ss_dssp HHHHHHHHSC---SSEEEEECSCHH-HHTTTCCEEECCB-TTBCCC---
T ss_pred HHHHHHHHHH---CCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECC
T ss_conf 9999999974---997999979899-9998589999998-999998687
No 6
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=444.63 Aligned_cols=436 Identities=22% Similarity=0.258 Sum_probs=308.7
Q ss_pred CCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 21224156883873999976999947999999929999999701099---------9988507888-----899518997
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEV---------SYNGYKLEEF-----VPPKTSAYI 250 (1449)
Q Consensus 185 ~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V---------~~nG~~~~~~-----~~~~~~aYV 250 (1449)
.+|+|+| .+++|+.++|+|||||||||||++|+|.+.|+ +|++ .++|.++... ..+..++|+
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred CCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0026768-67999999999999997999999996799888---8866753145677618840777787888874446653
Q ss_pred CCCCCCCCC---CCHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCC
Q ss_conf 578866889---99999999998802999822355672099886299999796899999863100012129999999099
Q 000517 251 SQNDLHIAE---MTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGL 327 (1449)
Q Consensus 251 ~Q~D~h~~~---lTVrEtL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL 327 (1449)
.|.....+. .||+|++.... ....++.+++.+||
T Consensus 112 ~q~~~~~~~~~~~~v~e~~~~~~-------------------------------------------~~~~~~~~l~~lgl 148 (538)
T 1yqt_A 112 PQYVDLIPKAVKGKVIELLKKAD-------------------------------------------ETGKLEEVVKALEL 148 (538)
T ss_dssp CSCGGGSGGGCCSBHHHHHHHHC-------------------------------------------SSSCHHHHHHHTTC
T ss_pred HHHHHHCCHHHHCCHHHHHHHHH-------------------------------------------HHHHHHHHHHHCCC
T ss_conf 22343210121121999974313-------------------------------------------99999999987699
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHH
Q ss_conf 75345323464455677323315999999918994989968999999999999999999998717968999982590048
Q 000517 328 DVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPET 407 (1449)
Q Consensus 328 ~~~~dT~VG~~~~rGLSGGQKKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei 407 (1449)
++..|..+++ |||||||||.||++|+.+|++|+|||||++||..+..++++.|+++.+ .+.|+|++.| ...++
T Consensus 149 ~~~~~~~~~~-----LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsH-d~~~~ 221 (538)
T 1yqt_A 149 ENVLEREIQH-----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEH-DLAVL 221 (538)
T ss_dssp TTTTTSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECS-CHHHH
T ss_pred CHHHHCCHHH-----CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEC-CHHHH
T ss_conf 7366098354-----899999999999998469999999897345798899999999999996-5987999947-88999
Q ss_pred HHHCCEEEEEECCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 85227199981894999459555999988559988999992458987218022433210258997667987899998309
Q 000517 408 FDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKES 487 (1449)
Q Consensus 408 ~~lFD~IilL~~G~ivy~Gp~~~~~~~Fe~lGf~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~s~~~f~~~~~~s 487 (1449)
..++|+|++|.+|...|. .+ ..+
T Consensus 222 ~~~~dri~vl~~~~~~~~-------------------------------------~~----~~~---------------- 244 (538)
T 1yqt_A 222 DYLSDIIHVVYGEPGVYG-------------------------------------IF----SQP---------------- 244 (538)
T ss_dssp HHHCSEEEEEEEETTTEE-------------------------------------EE----CCC----------------
T ss_pred HHHCCEEEEECCCCCCCC-------------------------------------CC----CCH----------------
T ss_conf 976889999868632440-------------------------------------22----553----------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 32574799732756688999776666754564999999999999999860638999999999999999999871445776
Q 000517 488 PLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEI 567 (1449)
Q Consensus 488 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~ii~ali~gt~f~~~~~~~ 567 (1449)
+. . ++. .. ..+. +
T Consensus 245 ----------------------------~~----~-------~~~----------~~--------~~~~-------~--- 257 (538)
T 1yqt_A 245 ----------------------------KG----T-------RNG----------IN--------EFLR-------G--- 257 (538)
T ss_dssp ----------------------------EE----H-------HHH----------HH--------HHHH-------T---
T ss_pred ----------------------------HH----H-------HHH----------HH--------HHHH-------H---
T ss_conf ----------------------------55----8-------999----------99--------8764-------0---
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 54201335579999999999956779999884346688732144235677999899987119999999998888762388
Q 000517 568 DVFHGNYYMGSLYFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGY 647 (1449)
Q Consensus 568 ~~~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~ 647 (1449)
T Consensus 258 -------------------------------------------------------------------------------- 257 (538)
T 1yqt_A 258 -------------------------------------------------------------------------------- 257 (538)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHH
Q ss_conf 62188999999999999999999999999840587889999999999999865303369983679999996838889999
Q 000517 648 SPEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEI 727 (1449)
Q Consensus 648 ~~~~~~f~~~~l~l~l~~~~~~s~f~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~ya~~ 727 (1449)
+... ...
T Consensus 258 ------------------------------------------------------~~~~-~~~------------------ 264 (538)
T 1yqt_A 258 ------------------------------------------------------YLKD-ENV------------------ 264 (538)
T ss_dssp ------------------------------------------------------EETT-TTE------------------
T ss_pred ------------------------------------------------------CCCH-HHH------------------
T ss_conf ------------------------------------------------------2300-232------------------
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 99988405875443488875401245213786545504678999999999999999999988304358985321155553
Q 000517 728 GLSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLA 807 (1449)
Q Consensus 728 al~~nef~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~g~~i~f~il~~l~l~~~~~~~~~~~~~s~~~~~ 807 (1449)
... . ..
T Consensus 265 ----------~~~----------------------------------------------------~--~~---------- 270 (538)
T 1yqt_A 265 ----------RFR----------------------------------------------------P--YE---------- 270 (538)
T ss_dssp ----------ECS----------------------------------------------------S--SC----------
T ss_pred ----------CCC----------------------------------------------------C--CC----------
T ss_conf ----------034----------------------------------------------------4--45----------
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCHHCCCCCCCCCEEECCCEEEEECC
Q ss_conf 21013568889876567789888876554687555677707898445013304310100254556532300203577378
Q 000517 808 KMQESEDSSYGEPVKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPG 887 (1449)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~G 887 (1449)
... . . ...... +.....+.++|+++... . ..|+++++.+++|
T Consensus 271 ----------~~~---~--~---~~~~~~------~~~~~~l~~~~l~~~~~-------------~-~~l~~~~~~i~~G 312 (538)
T 1yqt_A 271 ----------IKF---T--K---TGERVE------IERETLVTYPRLVKDYG-------------S-FRLEVEPGEIKKG 312 (538)
T ss_dssp ----------CCC---C--C---SSGGGS------SCCCEEEEECCEEEEET-------------T-EEEEECCEEEETT
T ss_pred ----------CCC---C--C---CCCCCC------CCCCEEEEEEEEEEEEC-------------C-EEEEECCCCCCCC
T ss_conf ----------554---5--5---776556------67871899930799989-------------9-8999074412899
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 29999657999744798424099778704789999692274000133489970488889999899999999983049999
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEI 967 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~ 967 (1449)
|++||+|+||||||||+++|+|...+ .+|+|.+ ...++|++|+....+..||.|.+.........
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~--- 377 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----------DLTVAYKPQYIKADYEGTVYELLSKIDASKLN--- 377 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHT---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----------CCEEEEEECCCCCCCCCCHHHHHHHHHCCCCC---
T ss_conf 89999889999999999999679989--9718998----------74699982677678888599999864036887---
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 95789999999999839942112224688888789999999999999961997889939999999999999999999999
Q 000517 968 NSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV 1047 (1449)
Q Consensus 968 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~gLSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~l~ 1047 (1449)
..+.++++++.+++.+..+..++ .||||||||+.||++|+.+|++|+|||||+|||..+...+++.|++++
T Consensus 378 ----~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~ 448 (538)
T 1yqt_A 378 ----SNFYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 448 (538)
T ss_dssp ----CHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf ----89999999997499156539944-----489999999999999972899899939801089999999999999999
Q ss_pred H-CCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCC
Q ss_conf 6-6998999935852999986083989906-959999448888
Q 000517 1048 N-TGRTIVCTIHQPSIDIFEAFDELILLKT-GGRIIYCGPLGK 1088 (1449)
Q Consensus 1048 ~-~g~tvi~t~Hqps~~i~~~fD~illl~~-gG~~~y~G~~~~ 1088 (1449)
+ .|.|||+++|+.. ++...+|++++|.. .|+++..|++.+
T Consensus 449 ~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 449 EKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHH
T ss_conf 867989999939899-999968999999088315740489899
No 7
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=436.99 Aligned_cols=202 Identities=22% Similarity=0.280 Sum_probs=161.5
Q ss_pred EECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHH
Q ss_conf 30020357737829999657999744798424099778704789999692274000133489970488889999899999
Q 000517 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESV 955 (1449)
Q Consensus 876 iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E~l 955 (1449)
.|+.+++.+++||+++|+|+||||||||+++|+|...+ .+|+|.+++. .++|++|+....+..||+|++
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~l 351 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQYL 351 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSCC---------CEEEECSSCCCCCSSBHHHHH
T ss_pred EEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCE---------EEEEECHHCCCCCCCCHHHHH
T ss_conf 99826646889989999999999899999999578889--9818999984---------567614000345477799999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
Q ss_conf 99998304999995789999999999839942112224688888789999999999999961997889939999999999
Q 000517 956 IFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARA 1035 (1449)
Q Consensus 956 ~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~gLSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~~ 1035 (1449)
.+.. ... .. .....++++++.++|.+..+..++ .||||||||++||++|+.+|++|+|||||+|||..+
T Consensus 352 ~~~~---~~~-~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~ 420 (538)
T 3ozx_A 352 ENAS---KDA-LS--TSSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEE 420 (538)
T ss_dssp HHHC---SST-TC--TTSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred HHHH---HHC-CC--HHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf 8755---311-21--169999999987599778628932-----279999999999999970899899969865799999
Q ss_pred HHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999999999996-6998999935852999986083989906-959999448888815799998408
Q 000517 1036 AAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKT-GGRIIYCGPLGKHSSQVIEYFEGI 1100 (1449)
Q Consensus 1036 ~~~i~~~l~~l~~-~g~tvi~t~Hqps~~i~~~fD~illl~~-gG~~~y~G~~~~~~~~~~~yF~~~ 1100 (1449)
...+++.|+++++ .|.|||+++|+.. ++...+|++++|.. .|.....|++......+.+|+..+
T Consensus 421 ~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 421 RYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486 (538)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCCCCHHHHHHHHHHHHHHC
T ss_conf 999999999999738989999958899-999968999999698510116798477887888887416
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=420.68 Aligned_cols=201 Identities=20% Similarity=0.241 Sum_probs=157.8
Q ss_pred EEECCCEEEEECC-----EEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 2300203577378-----29999657999744798424099778704789999692274000133489970488889999
Q 000517 875 RLLYDVTGSLRPG-----VLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNI 949 (1449)
Q Consensus 875 ~iL~~vs~~i~~G-----e~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~~~~l 949 (1449)
..++++++.+++| |+++|+|+||||||||+++|+|...+ .+|+. .. +..++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC--CCCCC------CC----CCCEEEECCCCCCCCCC
T ss_conf 44686589970685146518999888898699999999657878--78858------66----77379860544445786
Q ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 89999999998304999995789999999999839942112224688888789999999999999961997889939999
Q 000517 950 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 1029 (1449)
Q Consensus 950 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~gLSgGqrkRlsIa~~L~~~p~il~lDEPTs 1029 (1449)
||+|.+.. .++. ... ....++++++.++|.+.++..++ .||||||||+.||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~--~~~~--~~~---~~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFK--KIRG--QFL---NPQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHH--HCSS--TTT---SHHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHH--HHHC--CCC---CHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 69999987--7530--324---68999999987498346519932-----389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 999999999999999999-66998999935852999986083989906-959999448888815799998408
Q 000517 1030 GLDARAAAIVMRAVKNIV-NTGRTIVCTIHQPSIDIFEAFDELILLKT-GGRIIYCGPLGKHSSQVIEYFEGI 1100 (1449)
Q Consensus 1030 gLD~~~~~~i~~~l~~l~-~~g~tvi~t~Hqps~~i~~~fD~illl~~-gG~~~y~G~~~~~~~~~~~yF~~~ 1100 (1449)
|||..+...+++.+++++ +.|.|||+++|+.. ++...+|++++|.. .|+++..|++.+--.....+...+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 899999999999999999757998999968899-999868999999589873774298699863046899754
No 9
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=342.82 Aligned_cols=198 Identities=27% Similarity=0.452 Sum_probs=143.8
Q ss_pred EEECCCEEEEECCEEEEEECCCCCCHHHHH---------HHHCCCCC-CC---EE------EEEEEECCCCCCCC-----
Q ss_conf 230020357737829999657999744798---------42409977-87---04------78999969227400-----
Q 000517 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLM---------DVLAGRKT-SG---YV------EGEIKISGYPKVQE----- 930 (1449)
Q Consensus 875 ~iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl---------~~Lagr~~-~~---~~------~G~i~i~g~~~~~~----- 930 (1449)
..|+|||+.+++|++++|+|+||||||||+ +.+.+... .+ .+ .+.+.+++.+....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 43365312871895999992588881545777777899987403445666533335510114257631565566555564
Q ss_pred -C-----------C---------------------------CCEEEEECCCCCCCC------------------------
Q ss_conf -0-----------1---------------------------334899704888899------------------------
Q 000517 931 -T-----------F---------------------------ARVSGYCEQTDIHSP------------------------ 947 (1449)
Q Consensus 931 -~-----------~---------------------------~~~~~yv~Q~d~~~~------------------------ 947 (1449)
+ + .+..||+.++....|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHC
T ss_conf 30223678899986126687750455543111146664432367634877410167615632201464356665543015
Q ss_pred --------CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf --------998999999999830499999578999999999983994211222468888878999999999999996199
Q 000517 948 --------NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANP 1019 (1449)
Q Consensus 948 --------~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~gLSgGqrkRlsIa~~L~~~p 1019 (1449)
.+||.|++.|... ......+.++++.+||... ..|.+. ..||||||||+.||++|+.+|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~---------~~~~~~~~~~L~~vGL~~~---~lgq~~-~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKN---------IPSIKRTLQVLHDVGLGYV---KLGQPA-TTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTT---------CHHHHHHHHHHHHTTGGGS---BTTCCS-TTCCHHHHHHHHHHHHHTSCC
T ss_pred CCCHHHHHHCCHHHHHHHHHC---------CHHHHHHHHHHHHCCCCHH---HCCCCC-CCCCHHHHHHHHHHHHHHHCC
T ss_conf 677787740779999998751---------5058999999998188633---316871-579999999999999996287
Q ss_pred ---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEE-----CCCEEEEECCCC
Q ss_conf ---78899399999999999999999999996699899993585299998608398990-----695999944888
Q 000517 1020 ---SIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK-----TGGRIIYCGPLG 1087 (1449)
Q Consensus 1020 ---~il~lDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~illl~-----~gG~~~y~G~~~ 1087 (1449)
++++|||||+|||..+...+++.|+++++.|.|||++.|++ +....+|++++|. .+|++++.|++.
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEECCCCCCCCCEEEEECCHH
T ss_conf 88978999798889999999999999999996699899993799--999729999996687777897899976999
No 10
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=329.28 Aligned_cols=213 Identities=27% Similarity=0.383 Sum_probs=178.9
Q ss_pred CEEEEECCEEEEECCCCHHCCCCCCCCCEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 07898445013304310100254556532300203577378299996579997447984240997787047899996922
Q 000517 847 LTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP 926 (1449)
Q Consensus 847 ~~~~~~~l~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~ 926 (1449)
..++|+|++++.+.. .+..+|+|+|+.++||+++||+|+||||||||+++|.|... +.+|+|.+||.+
T Consensus 414 g~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~~ 481 (1321)
T 4f4c_A 414 GDITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGVD 481 (1321)
T ss_dssp CCEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CCEEEEEEEEECCCC----------CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCC--CCCCCCCCCCCC
T ss_conf 767999855407999----------98743333188622882789980589857788887545651--644861579965
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCC
Q ss_conf 740---00133489970488889999899999999983049999957899999999998399-------42112224688
Q 000517 927 KVQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-------DAIKDSLVGIP 996 (1449)
Q Consensus 927 ~~~---~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L-------~~~~~~~vg~~ 996 (1449)
..+ ..+++.++||+|+..+ .+-|++||+.|+. ++.+. +.+.++.+..++ .+-.||.||..
T Consensus 482 i~~~~~~~lr~~i~~v~Q~~~L-f~~TI~eNI~~g~-----~~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~ 551 (1321)
T 4f4c_A 482 VRDINLEFLRKNVAVVSQEPAL-FNCTIEENISLGK-----EGITR----EEMVAACKMANAEKFIKTLPNGYNTLVGDR 551 (1321)
T ss_dssp TTTSCHHHHHHHEEEECSSCCC-CSEEHHHHHHTTC-----TTCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESSS
T ss_pred CHHCCHHHHHHCCCCCCCCCEE-ECCCHHHHHHHHC-----CCCHH----HHHHHHHHHCCCHHHHHCCCCCCCCEECCC
T ss_conf 0112599985046665875332-0786167886415-----52209----999999987565468870888886075589
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEEC
Q ss_conf 88878999999999999996199788993999999999999999999999966998999935852999986083989906
Q 000517 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKT 1076 (1449)
Q Consensus 997 ~~~gLSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~illl~~ 1076 (1449)
|. .||||||||++|||+++++|+|++||||||+||+.+...+++.++++. +|+|+|+++|+++ ....+|++++|.
T Consensus 552 G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~- 626 (1321)
T 4f4c_A 552 GT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCK- 626 (1321)
T ss_dssp SC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEE-
T ss_pred CC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHH--HHHHCCEEEEEE-
T ss_conf 88-777778799999998725999899845544688789999999999984-7988999736387--898689899963-
Q ss_pred CCEEEEECCC
Q ss_conf 9599994488
Q 000517 1077 GGRIIYCGPL 1086 (1449)
Q Consensus 1077 gG~~~y~G~~ 1086 (1449)
+|+++..|+.
T Consensus 627 ~G~ive~Gth 636 (1321)
T 4f4c_A 627 NGQVVEVGDH 636 (1321)
T ss_dssp TTEEEEEECH
T ss_pred CCEEECCCCH
T ss_conf 9965136899
Done!