BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000518
(1448 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 119/265 (44%), Gaps = 46/265 (17%)
Query: 143 SRESILNDI---LDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAK--EGRIFDEVVFAE 197
+R+ ++N I L L+G + + ++GMAG GK+ L E R EG V +
Sbjct: 134 TRKKLVNAIQQKLSKLKGEPGW-VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS 192
Query: 198 VSQTPD----------LKRIRRE--IADQLGLNFCEESDSERIMMLCNRLKREKKILVIL 245
V + R+ ++ + +L LN E D RI+M L++ + L+IL
Sbjct: 193 VGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILM----LRKHPRSLLIL 248
Query: 246 DDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSEMHCQNNYCVSV---LNKEEAWS 302
DD+W S L+ C+IL+T+R + V S M Y V V L KE+
Sbjct: 249 DDVWDSWVLKA-------FDSQCQILLTTRDKSVTDSVM--GPKYVVPVESSLGKEKGLE 299
Query: 303 LFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQEL----- 357
+ S V ++ DL A + EC G P+ + + LR+ P W+ L++L
Sbjct: 300 ILSLFVN--MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQF 356
Query: 358 ----RFSARNFTGLEALLGSTIELI 378
+ S+ ++ L+ + ++E++
Sbjct: 357 KRIRKSSSYDYEALDEAMSISVEML 381
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 117/265 (44%), Gaps = 46/265 (17%)
Query: 143 SRESILNDI---LDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAK--EGRIFDEVVFAE 197
+R+ ++N I L L+G + + ++GMAG GK+ L E R EG V +
Sbjct: 128 TRKKLVNAIQQKLSKLKGEPGW-VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS 186
Query: 198 VSQTPDLKRIRR------------EIADQLGLNFCEESDSERIMMLCNRLKREKKILVIL 245
V + + + + +L LN E D RI+M L++ + L+IL
Sbjct: 187 VGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILM----LRKHPRSLLIL 242
Query: 246 DDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSEMHCQNNYCVSV---LNKEEAWS 302
DD+W S L+ C+IL+T+R + V S M Y V V L KE+
Sbjct: 243 DDVWDSWVLKA-------FDSQCQILLTTRDKSVTDSVM--GPKYVVPVESSLGKEKGLE 293
Query: 303 LFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQEL----- 357
+ S V ++ DL A + EC G P+ + + LR+ P W+ L++L
Sbjct: 294 ILSLFVN--MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQF 350
Query: 358 ----RFSARNFTGLEALLGSTIELI 378
+ S+ ++ L+ + ++E++
Sbjct: 351 KRIRKSSSYDYEALDEAMSISVEML 375
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 106/239 (44%), Gaps = 36/239 (15%)
Query: 163 IGVYGMAGIGKTTLVKEVARLAK--EGRIFDEVVFAEVSQTPD----------LKRIRRE 210
+ +YGMAG GK+ L E R EG V + + + R+ +E
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 209
Query: 211 --IADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGC 268
+ +L LN E D R++M L++ + L+ILDD+W L+ C
Sbjct: 210 ESFSQRLPLNIEEAKDRLRVLM----LRKHPRSLLILDDVWDPWVLKA-------FDNQC 258
Query: 269 KILVTSRRRDVLVSEMHCQNNYCV-SVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANE 327
+IL+T+R + V S M ++ V S L +E+ + S V ++ DL A + E
Sbjct: 259 QILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVN--MKKEDLPAEAHSIIKE 316
Query: 328 CGGLPIAILTVARTLRNKP--LFVWKKALQELRF------SARNFTGLEALLGSTIELI 378
C G P+ + + LR+ P + + LQ +F S+ ++ L+ + ++E++
Sbjct: 317 CKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 375
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 105/239 (43%), Gaps = 36/239 (15%)
Query: 163 IGVYGMAGIGKTTLVKEVARLAK--EGRIFDEVVFAEVSQTPD----------LKRIRRE 210
+ +YGMAG GK+ L E R EG V + + + R+ +E
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 216
Query: 211 --IADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGC 268
+ +L LN E D R++M L++ + L+ILDD+W L+ C
Sbjct: 217 ESFSQRLPLNIEEAKDRLRVLM----LRKHPRSLLILDDVWDPWVLKA-------FDNQC 265
Query: 269 KILVTSRRRDVLVSEMHCQNNYCV-SVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANE 327
+IL+T+ + V S M ++ V S L +E+ + S V ++ DL A + E
Sbjct: 266 QILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVN--MKKEDLPAEAHSIIKE 323
Query: 328 CGGLPIAILTVARTLRNKP--LFVWKKALQELRF------SARNFTGLEALLGSTIELI 378
C G P+ + + LR+ P + + LQ +F S+ ++ L+ + ++E++
Sbjct: 324 CKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 382
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 560 LESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVI 619
L L LD+C L + + G L L L L + ++ LP L L +LD+S ++L +
Sbjct: 58 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 116
Query: 620 PPNVISSLSQLEELYL----------GNTSVEWEFEGLNLERNNASLQELSI-----LSH 664
P + L +L+ELYL G + + E L+L NN L EL L +
Sbjct: 117 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN--LTELPAGLLNGLEN 174
Query: 665 LTTLEIHIRDAVILPKGLFSQKLARYKILVGDVW 698
L TL + +PKG F L + L G+ W
Sbjct: 175 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 208
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 560 LESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVI 619
L L LD+C L + + G L L L L + ++ LP L L +LD+S ++L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 620 PPNVISSLSQLEELYL----------GNTSVEWEFEGLNLERNNAS---LQELSILSHLT 666
P + L +L+ELYL G + + E L+L NN + L+ L +L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 667 TLEIHIRDAVILPKGLFSQKLARYKILVGDVW 698
TL + +PKG F L + L G+ W
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 66/152 (43%), Gaps = 14/152 (9%)
Query: 560 LESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVI 619
L L LD+C L + + G L L L L + ++ LP L L +LD+S ++L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 620 PPNVISSLSQLEELYLGNTSVEWEFEGL--------NLERNNASLQELSI-----LSHLT 666
P + L +L+ELYL ++ GL L N L EL L +L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 667 TLEIHIRDAVILPKGLFSQKLARYKILVGDVW 698
TL + +PKG F L + L G+ W
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 66/152 (43%), Gaps = 14/152 (9%)
Query: 560 LESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVI 619
L L LD+C L + + G L L L L + ++ LP L L +LD+S ++L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 620 PPNVISSLSQLEELYLGNTSVEWEFEGL--------NLERNNASLQELSI-----LSHLT 666
P + L +L+ELYL ++ GL L N L EL L +L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLD 175
Query: 667 TLEIHIRDAVILPKGLFSQKLARYKILVGDVW 698
TL + +PKG F L + L G+ W
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 66/152 (43%), Gaps = 14/152 (9%)
Query: 560 LESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVI 619
L L LD+C L + + G L L L L + ++ LP L L +LD+S ++L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 620 PPNVISSLSQLEELYLGNTSVEWEFEGL--------NLERNNASLQELSI-----LSHLT 666
P + L +L+ELYL ++ GL L N L EL L +L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 667 TLEIHIRDAVILPKGLFSQKLARYKILVGDVW 698
TL + +PKG F L + L G+ W
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 66/152 (43%), Gaps = 14/152 (9%)
Query: 560 LESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVI 619
L L LD+C L + + G L L L L + ++ LP L L +LD+S ++L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 620 PPNVISSLSQLEELYLGNTSVEWEFEGL--------NLERNNASLQELSI-----LSHLT 666
P + L +L+ELYL ++ GL L N L EL L +L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 667 TLEIHIRDAVILPKGLFSQKLARYKILVGDVW 698
TL + +PKG F L + L G+ W
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 66/152 (43%), Gaps = 14/152 (9%)
Query: 560 LESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVI 619
L L LD+C L + + G L L L L + ++ LP L L +LD+S ++L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 620 PPNVISSLSQLEELYLGNTSVEWEFEGL--------NLERNNASLQELSI-----LSHLT 666
P + L +L+ELYL ++ GL L N L EL L +L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 667 TLEIHIRDAVILPKGLFSQKLARYKILVGDVW 698
TL + +PKG F L + L G+ W
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 28/193 (14%)
Query: 519 PKDP-FLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCH-------LPNLESLCLDQCIL 570
PKD LH+ +N ++ TR+ L L + LP L +L L L
Sbjct: 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89
Query: 571 GDIAIIG-NLKNLEILSLCCSDIEQLP----REIGELTQLKLLDLSNCSKLKVIPPNVIS 625
+ ++G L L +L + + + LP R +GEL +L L ++LK +PP +++
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL----KGNELKTLPPGLLT 145
Query: 626 SLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQ 685
+LE+L L N ++ GL L+ L +L TL + +PKG F
Sbjct: 146 PTPKLEKLSLANNNLTELPAGL-----------LNGLENLDTLLLQENSLYTIPKGFFGS 194
Query: 686 KLARYKILVGDVW 698
L + L G+ W
Sbjct: 195 HLLPFAFLHGNPW 207
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 28/193 (14%)
Query: 519 PKDP-FLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCH-------LPNLESLCLDQCIL 570
PKD LH+ +N ++ TR+ L L + LP L +L L L
Sbjct: 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89
Query: 571 GDIAIIG-NLKNLEILSLCCSDIEQLP----REIGELTQLKLLDLSNCSKLKVIPPNVIS 625
+ ++G L L +L + + + LP R +GEL +L L ++LK +PP +++
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL----KGNELKTLPPGLLT 145
Query: 626 SLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQ 685
+LE+L L N ++ GL L+ L +L TL + +PKG F
Sbjct: 146 PTPKLEKLSLANNNLTELPAGL-----------LNGLENLDTLLLQENSLYTIPKGFFGS 194
Query: 686 KLARYKILVGDVW 698
L + L G+ W
Sbjct: 195 HLLPFAFLHGNPW 207
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 28/193 (14%)
Query: 519 PKDP-FLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCH-------LPNLESLCLDQCIL 570
PKD LH+ +N ++ TR+ L L + LP L +L L L
Sbjct: 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89
Query: 571 GDIAIIG-NLKNLEILSLCCSDIEQLP----REIGELTQLKLLDLSNCSKLKVIPPNVIS 625
+ ++G L L +L + + + LP R +GEL +L L ++LK +PP +++
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL----KGNELKTLPPGLLT 145
Query: 626 SLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQ 685
+LE+L L N ++ GL L+ L +L TL + +PKG F
Sbjct: 146 PTPKLEKLSLANNNLTELPAGL-----------LNGLENLDTLLLQENSLYTIPKGFFGS 194
Query: 686 KLARYKILVGDVW 698
L + L G+ W
Sbjct: 195 HLLPFAFLHGNPW 207
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 525 HIPDNFFAGMPKLRVLVLTRMKLLTLPSS-FCHLPNLESLCLDQCILG--DIAIIGNLKN 581
+P F + KLR+L L KL TLP+ F L NLE+L + L I + L N
Sbjct: 51 SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN 110
Query: 582 LEILSLCCSDIEQL-PREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSV 640
L L L + ++ L PR LT+L L L ++L+ +P V L+ L+EL L N +
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLG-YNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 641 EWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQKLARYKIL 693
+ EG L+ L TL++ +P+G F L + K+L
Sbjct: 170 KRVPEG-----------AFDKLTELKTLKLDNNQLKRVPEGAFDS-LEKLKML 210
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 552 SSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611
S L NLESL + DI +G L NL+ LSL + ++ + + LT L LDL+
Sbjct: 193 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 251
Query: 612 NCSKLKVIPPNVISSLSQLEELYLGNTSVE--WEFEGL----NLERNNASLQELSILSHL 665
N + P +S L++L EL LG + GL NLE N L+++S +S+L
Sbjct: 252 NNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 308
Query: 666 TTL 668
L
Sbjct: 309 KNL 311
Score = 34.7 bits (78), Expect = 0.39, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 21/138 (15%)
Query: 531 FAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCS 590
+G+ KL L L ++ + S L L +L L++ L DI+ I NLKNL L+L +
Sbjct: 261 LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 319
Query: 591 DIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLE 650
+I + + LT+L+ L N N +S +S L L T++ W G N
Sbjct: 320 NISDI-SPVSSLTKLQRLFFYN---------NKVSDVSSLANL----TNINWLSAGHN-- 363
Query: 651 RNNASLQELSILSHLTTL 668
+ +L+ L++LT +
Sbjct: 364 ----QISDLTPLANLTRI 377
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 552 SSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611
S L NLESL + DI +G L NL+ LSL + ++ + + LT L LDL+
Sbjct: 192 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 250
Query: 612 NCSKLKVIPPNVISSLSQLEELYLGNTSVE--WEFEGL----NLERNNASLQELSILSHL 665
N + P +S L++L EL LG + GL NLE N L+++S +S+L
Sbjct: 251 NNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 307
Query: 666 TTL 668
L
Sbjct: 308 KNL 310
Score = 35.8 bits (81), Expect = 0.18, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 21/138 (15%)
Query: 531 FAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCS 590
+G+ KL L L ++ + S L L +L L++ L DI+ I NLKNL L+L +
Sbjct: 260 LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 318
Query: 591 DIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLE 650
+I + + LT+L+ L +N N +S +S L L T++ W G N
Sbjct: 319 NISDI-SPVSSLTKLQRLFFAN---------NKVSDVSSLANL----TNINWLSAGHN-- 362
Query: 651 RNNASLQELSILSHLTTL 668
+ +L+ L++LT +
Sbjct: 363 ----QISDLTPLANLTRI 376
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 552 SSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611
S L NLESL + DI +G L NL+ LSL + ++ + + LT L LDL+
Sbjct: 188 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 246
Query: 612 NCSKLKVIPPNVISSLSQLEELYLGNTSVE--WEFEGL----NLERNNASLQELSILSHL 665
N + P +S L++L EL LG + GL NLE N L+++S +S+L
Sbjct: 247 NNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 303
Query: 666 TTL 668
L
Sbjct: 304 KNL 306
Score = 34.7 bits (78), Expect = 0.41, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 21/138 (15%)
Query: 531 FAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCS 590
+G+ KL L L ++ + S L L +L L++ L DI+ I NLKNL L+L +
Sbjct: 256 LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 314
Query: 591 DIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLE 650
+I + + LT+L+ L N N +S +S L L T++ W G N
Sbjct: 315 NISDI-SPVSSLTKLQRLFFYN---------NKVSDVSSLANL----TNINWLSAGHN-- 358
Query: 651 RNNASLQELSILSHLTTL 668
+ +L+ L++LT +
Sbjct: 359 ----QISDLTPLANLTRI 372
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 552 SSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611
S L NLESL + DI +G L NL+ LSL + ++ + + LT L LDL+
Sbjct: 188 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 246
Query: 612 NCSKLKVIPPNVISSLSQLEELYLGNTSVE--WEFEGL----NLERNNASLQELSILSHL 665
N + P +S L++L EL LG + GL NLE N L+++S +S+L
Sbjct: 247 NNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 303
Query: 666 TTL 668
L
Sbjct: 304 KNL 306
Score = 37.0 bits (84), Expect = 0.086, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 21/138 (15%)
Query: 531 FAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCS 590
+G+ KL L L ++ + S L L +L L++ L DI+ I NLKNL L+L +
Sbjct: 256 LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 314
Query: 591 DIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLE 650
+I + + LT+L+ L SN N +S +S L L T++ W G N
Sbjct: 315 NISDI-SPVSSLTKLQRLFFSN---------NKVSDVSSLANL----TNINWLSAGHN-- 358
Query: 651 RNNASLQELSILSHLTTL 668
+ +L+ L++LT +
Sbjct: 359 ----QISDLTPLANLTRI 372
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 552 SSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611
S L NLESL + DI +G L NL+ LSL + ++ + + LT L LDL+
Sbjct: 189 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 247
Query: 612 NCSKLKVIPPNVISSLSQLEELYLGNTSVE--WEFEGL----NLERNNASLQELSILSHL 665
N + P +S L++L EL LG + GL NLE N L+++S +S+L
Sbjct: 248 NNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 304
Query: 666 TTL 668
L
Sbjct: 305 KNL 307
Score = 37.0 bits (84), Expect = 0.091, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 21/138 (15%)
Query: 531 FAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCS 590
+G+ KL L L ++ + S L L +L L++ L DI+ I NLKNL L+L +
Sbjct: 257 LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 315
Query: 591 DIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLE 650
+I + + LT+L+ L SN N +S +S L L T++ W G N
Sbjct: 316 NISDI-SPVSSLTKLQRLFFSN---------NKVSDVSSLANL----TNINWLSAGHN-- 359
Query: 651 RNNASLQELSILSHLTTL 668
+ +L+ L++LT +
Sbjct: 360 ----QISDLTPLANLTRI 373
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 552 SSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611
S L NLESL + DI +G L NL+ LSL + ++ + + LT L LDL+
Sbjct: 189 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 247
Query: 612 NCSKLKVIPPNVISSLSQLEELYLGNTSVE--WEFEGL----NLERNNASLQELSILSHL 665
N + P +S L++L EL LG + GL NLE N L+++S +S+L
Sbjct: 248 NNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 304
Query: 666 TTL 668
L
Sbjct: 305 KNL 307
Score = 34.7 bits (78), Expect = 0.44, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 21/138 (15%)
Query: 531 FAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCS 590
+G+ KL L L ++ + S L L +L L++ L DI+ I NLKNL L+L +
Sbjct: 257 LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 315
Query: 591 DIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLE 650
+I + + LT+L+ L N N +S +S L L T++ W G N
Sbjct: 316 NISDI-SPVSSLTKLQRLFFYN---------NKVSDVSSLANL----TNINWLSAGHN-- 359
Query: 651 RNNASLQELSILSHLTTL 668
+ +L+ L++LT +
Sbjct: 360 ----QISDLTPLANLTRI 373
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 552 SSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611
S L NLESL + DI +G L NL+ LSL + ++ + + LT L LDL+
Sbjct: 189 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 247
Query: 612 NCSKLKVIPPNVISSLSQLEELYLGNTSVE--WEFEGL----NLERNNASLQELSILSHL 665
N + P +S L++L EL LG + GL NLE N L+++S +S+L
Sbjct: 248 NNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 304
Query: 666 TTL 668
L
Sbjct: 305 KNL 307
Score = 34.7 bits (78), Expect = 0.44, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 21/138 (15%)
Query: 531 FAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCS 590
+G+ KL L L ++ + S L L +L L++ L DI+ I NLKNL L+L +
Sbjct: 257 LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 315
Query: 591 DIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLE 650
+I + + LT+L+ L N N +S +S L L T++ W G N
Sbjct: 316 NISDI-SPVSSLTKLQRLFFYN---------NKVSDVSSLANL----TNINWLSAGHN-- 359
Query: 651 RNNASLQELSILSHLTTL 668
+ +L+ L++LT +
Sbjct: 360 ----QISDLTPLANLTRI 373
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 533 GMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIA-IIGNLKNLEILSL-CCS 590
G+ L+ L L + +LP+S +L NL+SL + L + I +L LE L L C+
Sbjct: 181 GLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT 240
Query: 591 DIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYL 635
+ P G LK L L +CS L +P + I L+QLE+L L
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDL 284
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 532 AGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQC--ILGDIAIIGNLKNLEILSLC- 588
A + L+ L + L L + HLP LE L L C + I G L+ L L
Sbjct: 203 ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262
Query: 589 CSDIEQLPREIGELTQLKLLDLSNCSKLKVIP 620
CS++ LP +I LTQL+ LDL C L +P
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 37.7 bits (86), Expect = 0.047, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 15/150 (10%)
Query: 502 ELPEGLE-YPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLT-LPSSFCH--- 556
ELP+ + + L +L + ++P +P + A + +LR L + LT LP
Sbjct: 118 ELPDTXQQFAGLETLTL-ARNPLRALPASI-ASLNRLRELSIRACPELTELPEPLASTDA 175
Query: 557 ------LPNLESLCLDQCILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLD 609
L NL+SL L+ + + A I NL+NL+ L + S + L I L +L+ LD
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235
Query: 610 LSNCSKLKVIPPNVISSLSQLEELYLGNTS 639
L C+ L+ PP + + L+ L L + S
Sbjct: 236 LRGCTALRNYPP-IFGGRAPLKRLILKDCS 264
Score = 30.0 bits (66), Expect = 8.9, Method: Composition-based stats.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 873 QLRSLILKFLPQLTSFYAQLKSSDELDTPKPLFNERVVFPNLETLELYAINTERIWHNQP 932
+LR L ++ P+LT L S+D + L NL++L L + P
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLV-------NLQSLRLEWTGIRSL----P 199
Query: 933 VAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICHCTVLEEIVSKERGEEAT 992
+++ +QNL L + S + L P+ + + +L+ L++ CT L G
Sbjct: 200 ASIA-NLQNLKSLKIRNS-PLSALGPA--IHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255
Query: 993 ATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKVKIFTSEFLSFPKN 1050
+ LK C S L+T IH L L++L++ GC + S P N
Sbjct: 256 KRLI------LKDC--SNLLTLPLDIHRLTQ--LEKLDLRGCVNLSRLPSLIAQLPAN 303
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 495 LHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSS- 553
LHDI+ + L Y LT + +P+ F + L+ LVL +L +LP
Sbjct: 75 LHDISALKELTNLTYLILTG------NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128
Query: 554 FCHLPNLESLCLDQCILGDI--AIIGNLKNLEILSLCCSDIEQLPREI-GELTQLKLLDL 610
F L NL L L L + + L NL L L + ++ LP + +LTQLK L L
Sbjct: 129 FDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSL 188
Query: 611 SNCSKLKVIPPNVISSLSQLEELYLGN 637
N ++LK +P V L+ L ++L N
Sbjct: 189 -NDNQLKSVPDGVFDRLTSLTHIWLLN 214
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 16/159 (10%)
Query: 556 HLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREI-GELTQLKLLDLSNCS 614
+LPN+ L L L DI+ + L NL L L + ++ LP + +LT LK L L +
Sbjct: 61 YLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-N 119
Query: 615 KLKVIPPNVISSLSQLEELYLGNTSVEWEFEGL-----NLER---NNASLQEL-----SI 661
+L+ +P V L+ L LYL + ++ +G+ NL R +N LQ L
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDK 179
Query: 662 LSHLTTLEIHIRDAVILPKGLFSQKLARYKI-LVGDVWD 699
L+ L L ++ +P G+F + + I L+ + WD
Sbjct: 180 LTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWD 218
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 26/121 (21%)
Query: 526 IPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEIL 585
+P F + +L VL L +L LPS A+ L +L+ L
Sbjct: 79 LPVGVFDSLTQLTVLDLGTNQLTVLPS---------------------AVFDRLVHLKEL 117
Query: 586 SLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYL-GNTSVEWEF 644
+CC+ + +LPR I LT L L L ++LK IP LS L YL GN W+
Sbjct: 118 FMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGN---PWDC 173
Query: 645 E 645
E
Sbjct: 174 E 174
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 68/145 (46%), Gaps = 11/145 (7%)
Query: 495 LHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSS- 553
LHDI+ + L Y LT + +P+ F + L+ LVL +L +LP
Sbjct: 75 LHDISALKELTNLTYLILTG------NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128
Query: 554 FCHLPNLESLCLDQCILGDI--AIIGNLKNLEILSLCCSDIEQLPREI-GELTQLKLLDL 610
F L NL L L L + + L NL L L + ++ LP + +LTQLK L L
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188
Query: 611 SNCSKLKVIPPNVISSLSQLEELYL 635
++LK +P V L+ L+ ++L
Sbjct: 189 YQ-NQLKSVPDGVFDRLTSLQYIWL 212
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 14/139 (10%)
Query: 556 HLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREI-GELTQLKLLDLSNCS 614
+LPN+ L L L DI+ + L NL L L + ++ LP + +LT LK L L +
Sbjct: 61 YLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-N 119
Query: 615 KLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRD 674
+L+ +P V L+ L L L + ++ +G+ L++LT L++
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV-----------FDKLTNLTELDLSYNQ 168
Query: 675 AVILPKGLFSQKLARYKIL 693
LP+G+F KL + K L
Sbjct: 169 LQSLPEGVFD-KLTQLKDL 186
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 37.4 bits (85), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 576 IGNLKNLEILSLCCSDIE-QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELY 634
IG++ L IL+L +DI +P E+G+L L +LDLS+ +KL P +S+L+ L E+
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEID 707
Query: 635 LGNTSVE 641
L N ++
Sbjct: 708 LSNNNLS 714
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 55/176 (31%)
Query: 500 TGELPEGL-----------------EYPHLTSLCMNPKDPF------------------- 523
+GELPE L P L +LC NPK+
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 524 -------LHIPDNFFAGMPKLRVLVLTRMKLLTL---------PSSFCHLPNLESLCLD- 566
LH+ N+ +G + L++++ L L P ++ LE+L LD
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 472
Query: 567 QCILGDI-AIIGNLKNLEILSLCCSDIE-QLPREIGELTQLKLLDLSNCSKLKVIP 620
+ G+I + + N NL +SL + + ++P+ IG L L +L LSN S IP
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 37.0 bits (84), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 576 IGNLKNLEILSLCCSDIE-QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELY 634
IG++ L IL+L +DI +P E+G+L L +LDLS+ +KL P +S+L+ L E+
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEID 710
Query: 635 LGNTSVE 641
L N ++
Sbjct: 711 LSNNNLS 717
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 55/176 (31%)
Query: 500 TGELPEGL-----------------EYPHLTSLCMNPKDPF------------------- 523
+GELPE L P L +LC NPK+
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 524 -------LHIPDNFFAGMPKLRVLVLTRMKLLTL---------PSSFCHLPNLESLCLD- 566
LH+ N+ +G + L++++ L L P ++ LE+L LD
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 567 QCILGDI-AIIGNLKNLEILSLCCSDIE-QLPREIGELTQLKLLDLSNCSKLKVIP 620
+ G+I + + N NL +SL + + ++P+ IG L L +L LSN S IP
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 24/112 (21%)
Query: 525 HIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEI 584
HIP N M L L L R + +PS HL +L+NLE
Sbjct: 137 HIPANLLTDMRNLSHLEL-RANIEEMPS---HL------------------FDDLENLES 174
Query: 585 LSLCCSDIEQLPREI-GELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYL 635
+ + + Q+PR I G++ +LK L+L++ ++LK +P + L+ L++++L
Sbjct: 175 IEFGSNKLRQMPRGIFGKMPKLKQLNLAS-NQLKSVPDGIFDRLTSLQKIWL 225
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 35.8 bits (81), Expect = 0.18, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 12/156 (7%)
Query: 487 LKNCIAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMK 546
L N I + L D +L +T L ++ +P ++ + AG+ ++ L LT +
Sbjct: 62 LNNLIGLELKDNQITDLAPLKNLTKITELELS-GNPLKNV--SAIAGLQSIKTLDLTSTQ 118
Query: 547 LLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLP--REIGELTQ 604
+ T + L NL+ L LD + +I+ + L NL+ LS+ + + L + +LT
Sbjct: 119 I-TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177
Query: 605 LKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSV 640
LK D +K+ I P ++SL L E++L N +
Sbjct: 178 LKADD----NKISDISP--LASLPNLIEVHLKNNQI 207
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 520 KDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPS-SFCHLPNLESLCLDQCILGDIAIIGN 578
+ P L I +N F G+ L +L L + L L + +F L NLE L L QC L + GN
Sbjct: 64 QTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGN 123
Query: 579 ----LKNLEILSLCCSDIEQL 595
L +LE+L L ++I+++
Sbjct: 124 FFKPLTSLEMLVLRDNNIKKI 144
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 520 KDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPS-SFCHLPNLESLCLDQCILGDIAIIGN 578
+ P L I +N F G+ L +L L + L L + +F L NLE L L QC L + GN
Sbjct: 64 QTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGN 123
Query: 579 ----LKNLEILSLCCSDIEQL 595
L +LE+L L ++I+++
Sbjct: 124 FFKPLTSLEMLVLRDNNIKKI 144
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 574 AIIGNLKNLEILSLCCSDIEQ--LPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLE 631
I L +LE+L + + ++ LP EL L LDLS C +L+ + P +SLS L+
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQ 497
Query: 632 ELYLGNTSVEWEFEGL 647
L + + ++ +G+
Sbjct: 498 VLNMASNQLKSVPDGI 513
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 552 SSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611
+ HLP LESL L + DI ++ L L+ LSL + I + G LT+L+ L LS
Sbjct: 125 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLS 183
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 56/131 (42%), Gaps = 16/131 (12%)
Query: 556 HLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSK 615
+LPN+ L L+ L DI + NLKNL L L + I+ L L N
Sbjct: 63 YLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNG-- 120
Query: 616 LKVIPPNVISSLSQLEELYLGNTSVE--------WEFEGLNLERNNAS----LQELSILS 663
+ N + L QLE LYLGN + + + L+LE N S L L+ L
Sbjct: 121 --ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 178
Query: 664 HLTTLEIHIRD 674
+L + HI D
Sbjct: 179 NLYLSKNHISD 189
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.5 bits (75), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 574 AIIGNLKNLEILSLCCSDIEQ--LPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLE 631
I L +LE+L + + ++ LP EL L LDLS C +L+ + P +SLS L+
Sbjct: 463 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQ 521
Query: 632 ELYLGNTS 639
L + + +
Sbjct: 522 VLNMSHNN 529
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 33.5 bits (75), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 552 SSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611
+ HLP LESL L + DI ++ L L+ LSL + I ++ + LT+L+ L LS
Sbjct: 126 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRI-VPLARLTKLQNLYLS 184
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.5 bits (75), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 574 AIIGNLKNLEILSLCCSDIEQ--LPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLE 631
I L +LE+L + + ++ LP EL L LDLS C +L+ + P +SLS L+
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQ 497
Query: 632 ELYLGNTS 639
L + + +
Sbjct: 498 VLNMSHNN 505
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 552 SSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611
+ HLP LESL L + DI ++ L L+ LSL + I + G LT+L+ L LS
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLS 186
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 56/131 (42%), Gaps = 16/131 (12%)
Query: 556 HLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSK 615
+LPN+ L L+ L DI + NLKNL L L + ++ L L N
Sbjct: 66 YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG-- 123
Query: 616 LKVIPPNVISSLSQLEELYLGNTSVE--------WEFEGLNLERNNAS----LQELSILS 663
+ N + L QLE LYLGN + + + L+LE N S L L+ L
Sbjct: 124 --ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 181
Query: 664 HLTTLEIHIRD 674
+L + HI D
Sbjct: 182 NLYLSKNHISD 192
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 574 AIIGNLKNLEILSLCCSDIEQ--LPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLE 631
I L +LE+L + + ++ LP EL L LDLS C +L+ + P +SLS L+
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQ 202
Query: 632 ELYLGN 637
L + +
Sbjct: 203 VLNMSH 208
>pdb|1FAI|L Chain L, Three-Dimensional Structure Of Two Crystal Forms Of Fab
R19.9, From A Monoclonal Anti-Arsonate Antibody
pdb|2F19|L Chain L, Three-Dimensional Structure Of Two Crystal Forms Of Fab
R19.9, From A Monoclonal Anti-Arsonate Antibody
Length = 214
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 576 IGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNV-------ISSLS 628
I NL++ +I + C LPR G T+L++ + + PP+ S +
Sbjct: 75 ISNLEHEDIATYFCQQGSTLPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVC 134
Query: 629 QLEELYLGNTSVEWEFEGLNLERNNASL 656
L Y + +V+W+ +G ER N L
Sbjct: 135 FLNNFYPKDINVKWKIDG--SERQNGVL 160
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 17/114 (14%)
Query: 601 ELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGL--------NLERN 652
+LT+L L L+N ++L +P V L+QL++LYLG ++ G+ L N
Sbjct: 81 DLTELGTLGLAN-NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
Query: 653 NASLQELSI-----LSHLTTLEIHIRDAVILPKGLFSQKLARYK--ILVGDVWD 699
LQ + L++L TL + +P G F +L + + L G+ +D
Sbjct: 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD-RLGKLQTITLFGNQFD 192
>pdb|2A6D|L Chain L, Crystal Structure Analysis Of The Anti-Arsonate Germline
Antibody 36-65 In Complex With A Phage Display Derived
Dodecapeptide Rlliadppspre
pdb|2A6D|A Chain A, Crystal Structure Analysis Of The Anti-Arsonate Germline
Antibody 36-65 In Complex With A Phage Display Derived
Dodecapeptide Rlliadppspre
pdb|2A6I|A Chain A, Crystal Structure Analysis Of The Anti-Arsonate Germline
Antibody 36-65 In Complex With A Phage Display Derived
Dodecapeptide Klasipthtspl
pdb|2A6J|L Chain L, Crystal Structure Analysis Of The Anti-Arsonate Germline
Antibody 36- 65
pdb|2A6J|A Chain A, Crystal Structure Analysis Of The Anti-Arsonate Germline
Antibody 36- 65
pdb|2A6K|A Chain A, Crystal Structure Analysis Of The Germline Antibody 36-65
Fab In Complex With The Dodecapeptide Slgdnltnhnlr
pdb|2A6K|L Chain L, Crystal Structure Analysis Of The Germline Antibody 36-65
Fab In Complex With The Dodecapeptide Slgdnltnhnlr
Length = 214
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 576 IGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNV-------ISSLS 628
I NL+ +I + C LPR G T+L++ + + PP+ S +
Sbjct: 75 ISNLEQEDIATYFCQQGNTLPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVC 134
Query: 629 QLEELYLGNTSVEWEFEGLNLERNNASL 656
L Y + +V+W+ +G ER N L
Sbjct: 135 FLNNFYPKDINVKWKIDG--SERQNGVL 160
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 17/114 (14%)
Query: 601 ELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGL--------NLERN 652
+LT+L L L+N ++L +P V L+QL++LYLG ++ G+ L N
Sbjct: 81 DLTELGTLGLAN-NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
Query: 653 NASLQELSI-----LSHLTTLEIHIRDAVILPKGLFSQKLARYK--ILVGDVWD 699
LQ + L++L TL + +P G F +L + + L G+ +D
Sbjct: 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD-RLGKLQTITLFGNQFD 192
>pdb|6FAB|L Chain L, Three-Dimensional Structure Of Murine Anti-P-
Azophenylarsonate Fab 36-71. 1. X-Ray Crystallography,
Site-Directed Mutagenesis, And Modeling Of The Complex
With Hapten
Length = 214
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 576 IGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNV-------ISSLS 628
I NL+ +I + C LPR G T+L++ + + PP+ S +
Sbjct: 75 ISNLEQEDIATYFCQQGNALPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVC 134
Query: 629 QLEELYLGNTSVEWEFEGLNLERNNASL 656
L Y + +V+W+ +G ER N L
Sbjct: 135 FLNNFYPKDINVKWKIDG--SERQNGVL 160
>pdb|1JFQ|L Chain L, Antigen-Binding Fragment Of The Murine Anti-Phenylarsonate
Antibody 36-71, "fab 36-71"
Length = 215
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 576 IGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNV-------ISSLS 628
I NL+ +I + C LPR G T+L++ + + PP+ S +
Sbjct: 75 ISNLEQEDIATYFCQQGNALPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVC 134
Query: 629 QLEELYLGNTSVEWEFEGLNLERNNASL 656
L Y + +V+W+ +G ER N L
Sbjct: 135 FLNNFYPKDINVKWKIDG--SERQNGVL 160
>pdb|2GSI|A Chain A, Crystal Structure Of A Murine Fab In Complex With An 11
Residue Peptide Derived From Staphylococcal Nuclease
pdb|2GSI|C Chain C, Crystal Structure Of A Murine Fab In Complex With An 11
Residue Peptide Derived From Staphylococcal Nuclease
pdb|2GSI|E Chain E, Crystal Structure Of A Murine Fab In Complex With An 11
Residue Peptide Derived From Staphylococcal Nuclease
pdb|2GSI|G Chain G, Crystal Structure Of A Murine Fab In Complex With An 11
Residue Peptide Derived From Staphylococcal Nuclease
Length = 215
Score = 32.3 bits (72), Expect = 2.2, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 589 CSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNV-------ISSLSQLEELYLGNTSVE 641
CS I +LPR G T+L++ + + PP+ S + L Y + +V+
Sbjct: 92 CSHIRELPRSSGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVK 151
Query: 642 WEFEGLNLERNNASL 656
W+ +G ER N L
Sbjct: 152 WKIDG--SERQNGVL 164
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 9/111 (8%)
Query: 532 AGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSD 591
AG+ ++ L LT ++ T + L NL+ L LD + +I+ + L NL+ LS+ +
Sbjct: 110 AGLQSIKTLDLTSTQI-TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQ 168
Query: 592 IEQLP--REIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSV 640
+ L + +LT L+ D +K+ I P ++SL L E++L + +
Sbjct: 169 VNDLTPLANLSKLTTLRADD----NKISDISP--LASLPNLIEVHLKDNQI 213
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 552 SSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611
+ HLP LESL L + DI ++ L L+ LSL + I + G LT+L+ L LS
Sbjct: 126 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLS 184
>pdb|1OAK|L Chain L, Crystal Structure Of The Von Willebrand Factor (Vwf) A1
Domain In Complex With The Function Blocking Nmc-4 Fab
Length = 212
Score = 32.0 bits (71), Expect = 2.9, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 576 IGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNV-------ISSLS 628
I NL+ +I + C E+LP G T+L++ + + PP+ S +
Sbjct: 75 ISNLEPEDIATYYCQQYEKLPWTFGGGTKLEVKRADAAPTVSIFPPSSEQLTSGGASVVC 134
Query: 629 QLEELYLGNTSVEWEFEGLNLERNNASL 656
L Y + +V+W+ +G ER N L
Sbjct: 135 FLNNFYPKDINVKWKIDG--SERQNGVL 160
>pdb|1FNS|L Chain L, Crystal Structure Of The Von Willebrand Factor (Vwf) A1
Domain I546v Mutant In Complex With The Function
Blocking Fab Nmc4
Length = 214
Score = 32.0 bits (71), Expect = 2.9, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 576 IGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNV-------ISSLS 628
I NL+ +I + C E+LP G T+L++ + + PP+ S +
Sbjct: 75 ISNLEPEDIATYYCQQYEKLPWTFGGGTKLEVKRADAAPTVSIFPPSSEQLTSGGASVVC 134
Query: 629 QLEELYLGNTSVEWEFEGLNLERNNASL 656
L Y + +V+W+ +G ER N L
Sbjct: 135 FLNNFYPKDINVKWKIDG--SERQNGVL 160
>pdb|1ZAN|L Chain L, Crystal Structure Of Anti-Ngf Ad11 Fab
Length = 214
Score = 32.0 bits (71), Expect = 2.9, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 576 IGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNV-------ISSLS 628
I +L++ ++ S C PR G T+L+L + + PP+ S +
Sbjct: 75 INSLQSEDVASYFCQHYFGYPRTFGGGTKLELKRADAAPTVSIFPPSSEQLASGGASVVC 134
Query: 629 QLEELYLGNTSVEWEFEGLNLERNNASLQELS 660
L Y + SV+W+ +G ER N L ++
Sbjct: 135 LLNNFYPKDISVKWKIDG--SERQNGVLDSVT 164
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 552 SSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611
+ HLP LESL L + DI ++ L L+ LSL + I + G LT+L+ L LS
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLS 186
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 552 SSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611
+ HLP LESL L + DI ++ L L+ LSL + I + G LT+L+ L LS
Sbjct: 148 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLS 206
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 17/153 (11%)
Query: 534 MPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIE 593
+P L L L+ ++ + S +LPN+ L L+ L DI + NLKNL L L + ++
Sbjct: 65 LPNLTSLNLSNNQITDI-SPIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK 123
Query: 594 QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVE--------WEFE 645
L L N + N + L QLE LYLGN + + +
Sbjct: 124 DLSSLKDLKKLKSLSLEHNG----ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLD 179
Query: 646 GLNLERNNAS----LQELSILSHLTTLEIHIRD 674
L+LE N S L L+ L +L + HI D
Sbjct: 180 TLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD 212
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 31.2 bits (69), Expect = 4.0, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 154 ALRGPYVYMIGVYGMAGIGKTTLVKEV-----ARLAKEGRIFDEV-VFAEVSQTPDLKRI 207
ALRG +YG+ G GKT + + V AR + G + + V A +TP R+
Sbjct: 38 ALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETP--YRV 95
Query: 208 RREIADQLGLN--FCEESDSERIMMLCNRLKREKKI-LVILDDI 248
IA+ +G+ F S E L RL R + I +++LD+I
Sbjct: 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEI 139
>pdb|3LS3|A Chain A, Padron0.9-On (Fluorescent State)
pdb|3LS3|B Chain B, Padron0.9-On (Fluorescent State)
pdb|3LS3|C Chain C, Padron0.9-On (Fluorescent State)
pdb|3LS3|D Chain D, Padron0.9-On (Fluorescent State)
pdb|3LSA|A Chain A, Padron0.9-Off (Non-Fluorescent State)
pdb|3LSA|B Chain B, Padron0.9-Off (Non-Fluorescent State)
pdb|3LSA|C Chain C, Padron0.9-Off (Non-Fluorescent State)
pdb|3LSA|D Chain D, Padron0.9-Off (Non-Fluorescent State)
Length = 235
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 641 EWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQKL 687
E F+G+N N +Q+ ++ L+T ++++RD V+ G ++ L
Sbjct: 128 EIRFDGVNFPANGPVMQKRTVKWELSTEKLYVRDGVLKSDGNYALSL 174
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 578 NLKNLEILSLCCSDIEQLPREIGE---LTQLKLLDLSNCSKLKVIPPNVISSLSQLEELY 634
+L +LE+L L + I Q+ E+G L L L+L + + L VIP LS+L EL+
Sbjct: 97 HLHHLEVLQLGRNSIRQI--EVGAFNGLASLNTLELFD-NWLTVIPSGAFEYLSKLRELW 153
Query: 635 LGNTSVE 641
L N +E
Sbjct: 154 LRNNPIE 160
>pdb|3ZUL|A Chain A, Padron On (Fluorescent) Icis Intermediate State
pdb|3ZUL|B Chain B, Padron On (Fluorescent) Icis Intermediate State
pdb|3ZUL|C Chain C, Padron On (Fluorescent) Icis Intermediate State
pdb|3ZUL|D Chain D, Padron On (Fluorescent) Icis Intermediate State
pdb|3ZUL|E Chain E, Padron On (Fluorescent) Icis Intermediate State
pdb|3ZUL|F Chain F, Padron On (Fluorescent) Icis Intermediate State
Length = 221
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 641 EWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQKL 687
E F+G+N N +Q+ ++ L+T ++++RD V+ G ++ L
Sbjct: 114 EIRFDGVNFPANGPVMQKRTVKWELSTEKLYVRDGVLKSDGNYALSL 160
>pdb|3ZUJ|A Chain A, Padron On (Fluorescent) Abcis
pdb|3ZUJ|B Chain B, Padron On (Fluorescent) Abcis
pdb|3ZUJ|C Chain C, Padron On (Fluorescent) Abcis
pdb|3ZUJ|D Chain D, Padron On (Fluorescent) Abcis
pdb|3ZUJ|E Chain E, Padron On (Fluorescent) Abcis
pdb|3ZUJ|F Chain F, Padron On (Fluorescent) Abcis
Length = 214
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 641 EWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQKL 687
E F+G+N N +Q+ ++ L+T ++++RD V+ G ++ L
Sbjct: 114 EIRFDGVNFPANGPVMQKRTVKWELSTEKLYVRDGVLKSDGNYALSL 160
>pdb|2V7H|A Chain A, Crystal Structure Of An Immunogen Specific Anti-
Mannopyranoside Monoclonal Antibody Fab Fragment
pdb|2V7H|L Chain L, Crystal Structure Of An Immunogen Specific Anti-
Mannopyranoside Monoclonal Antibody Fab Fragment
Length = 214
Score = 30.8 bits (68), Expect = 5.7, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 576 IGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNV-------ISSLS 628
I NL+ +I + C LPR G T+L++ + + PP+ S +
Sbjct: 75 ISNLEQEDIATYFCQQGNTLPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVC 134
Query: 629 QLEELYLGNTSVEWEFEG 646
L Y + +V+W+ +G
Sbjct: 135 FLNNFYPKDINVKWKIDG 152
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 553 SFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSN 612
S HL NLE L + L I ++G L LE+L L ++I G LT+LK ++ +
Sbjct: 123 SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN----TGGLTRLKKVNWID 178
Query: 613 CSKLKVIPPNVISSLSQLEELYLGNT 638
+ K V + ELY+ NT
Sbjct: 179 LTGQKC----VNEPVKYQPELYITNT 200
>pdb|3ZUF|A Chain A, Padron Off (Non-Fluorescent) Btrans
pdb|3ZUF|B Chain B, Padron Off (Non-Fluorescent) Btrans
pdb|3ZUF|C Chain C, Padron Off (Non-Fluorescent) Btrans
pdb|3ZUF|D Chain D, Padron Off (Non-Fluorescent) Btrans
pdb|3ZUF|E Chain E, Padron Off (Non-Fluorescent) Btrans
pdb|3ZUF|F Chain F, Padron Off (Non-Fluorescent) Btrans
Length = 215
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 641 EWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQKL 687
E F+G+N N +Q+ ++ L+T ++++RD V+ G ++ L
Sbjct: 114 EIRFDGVNFPANGPVMQKRTVKWELSTEKLYVRDGVLKSDGNYALSL 160
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 552 SSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611
+ HLP LESL L + DI ++ L L+ LSL + I + G LT+L+ L LS
Sbjct: 146 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLS 204
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 552 SSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611
+ HLP LESL L + DI ++ L L+ LSL + I + G LT+L+ L LS
Sbjct: 146 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLS 204
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 552 SSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611
+ HLP LESL L + DI ++ L L+ LSL + I + G LT+L+ L LS
Sbjct: 146 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLS 204
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 30.8 bits (68), Expect = 6.3, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 165 VYGMAGIGKTTLVKEVARLAKEGRIF---DEVVFAEVSQTP----DLKRIRREIADQLGL 217
+YG G GKT LVK VA K I E V + + P D+ R+ RE A +
Sbjct: 211 LYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPS--I 268
Query: 218 NFCEESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRR 277
F +E DS + ++++ IL ++ T +D G D K+++ + R
Sbjct: 269 IFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMD----GF---DQSTNVKVIMATNRA 321
Query: 278 DVL 280
D L
Sbjct: 322 DTL 324
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 552 SSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611
+ HLP LESL L + DI ++ L L+ LSL + I + G LT+L+ L LS
Sbjct: 123 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLS 181
>pdb|1EMT|L Chain L, Fab Antibody Fragment Of An C60 Antifullerene Antibody
Length = 214
Score = 30.4 bits (67), Expect = 7.2, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 576 IGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNV-------ISSLS 628
I NL+ +I + C +LP G T+L++ + + PP+ S +
Sbjct: 75 INNLEPEDIATYFCQQYSRLPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVC 134
Query: 629 QLEELYLGNTSVEWEFEGLNLERNNASL 656
L Y + +V+W+ +G ER N L
Sbjct: 135 FLNNFYPKDINVKWKIDG--SERQNGVL 160
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 30.0 bits (66), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 552 SSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611
+ HLP LESL L + DI ++ L L+ LSL + I + + LT+L+ L LS
Sbjct: 123 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLACLTKLQNLYLS 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,735,962
Number of Sequences: 62578
Number of extensions: 1679884
Number of successful extensions: 4186
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 4017
Number of HSP's gapped (non-prelim): 210
length of query: 1448
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1337
effective length of database: 8,027,179
effective search space: 10732338323
effective search space used: 10732338323
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)