Query 000518
Match_columns 1448
No_of_seqs 799 out of 6588
Neff 9.5
Searched_HMMs 46136
Date Mon Apr 1 17:41:04 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.5E-80 5.4E-85 778.8 43.9 626 6-671 12-676 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.6E-59 3.6E-64 628.2 59.5 688 137-982 182-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.1E-39 6.7E-44 372.3 20.3 273 144-420 1-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 3.4E-30 7.3E-35 348.1 30.5 529 488-1212 69-603 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.1E-29 2.4E-34 343.0 27.8 154 510-676 69-225 (968)
6 PLN03210 Resistant to P. syrin 99.8 6.7E-20 1.5E-24 246.9 22.4 317 911-1301 610-945 (1153)
7 KOG0618 Serine/threonine phosp 99.8 6.5E-22 1.4E-26 234.6 -2.9 481 494-1165 4-490 (1081)
8 KOG4194 Membrane glycoprotein 99.8 3.6E-20 7.9E-25 208.1 7.9 153 509-674 77-232 (873)
9 KOG0618 Serine/threonine phosp 99.8 2.6E-20 5.5E-25 221.2 -2.8 114 524-640 11-126 (1081)
10 KOG0472 Leucine-rich repeat pr 99.8 1.4E-21 3E-26 210.4 -12.8 124 1076-1214 416-539 (565)
11 KOG0472 Leucine-rich repeat pr 99.7 1.7E-21 3.6E-26 209.7 -14.9 173 491-679 48-222 (565)
12 KOG4194 Membrane glycoprotein 99.7 6.7E-19 1.4E-23 198.0 4.3 336 487-847 77-427 (873)
13 KOG0444 Cytoskeletal regulator 99.7 5.2E-20 1.1E-24 207.3 -5.7 367 510-1016 7-380 (1255)
14 KOG0444 Cytoskeletal regulator 99.7 4E-19 8.6E-24 200.3 -3.4 195 486-692 53-252 (1255)
15 KOG0617 Ras suppressor protein 99.5 4.6E-16 1E-20 148.7 -4.7 167 500-682 23-192 (264)
16 KOG0617 Ras suppressor protein 99.4 2.5E-15 5.4E-20 143.8 -4.7 156 482-641 27-186 (264)
17 PRK04841 transcriptional regul 99.3 4.7E-11 1E-15 161.4 22.2 293 137-467 12-332 (903)
18 PRK15387 E3 ubiquitin-protein 99.3 4.4E-11 9.5E-16 149.3 16.3 155 491-679 204-358 (788)
19 COG2909 MalT ATP-dependent tra 99.3 2.4E-10 5.1E-15 137.5 21.5 293 138-468 18-339 (894)
20 PRK15370 E3 ubiquitin-protein 99.2 2.7E-11 5.9E-16 152.5 12.0 137 490-641 180-317 (754)
21 PRK15370 E3 ubiquitin-protein 99.2 1.4E-10 2.9E-15 146.2 13.8 172 478-679 190-362 (754)
22 KOG4658 Apoptotic ATPase [Sign 99.2 3.4E-11 7.4E-16 153.9 8.2 128 533-674 521-653 (889)
23 PRK15387 E3 ubiquitin-protein 99.1 7.8E-10 1.7E-14 138.3 16.7 135 487-641 221-355 (788)
24 TIGR03015 pepcterm_ATPase puta 99.1 1.8E-08 3.8E-13 115.0 23.9 181 158-342 41-242 (269)
25 KOG4341 F-box protein containi 99.1 9.3E-12 2E-16 136.9 -3.4 70 938-1013 162-231 (483)
26 PRK00411 cdc6 cell division co 99.0 2.5E-08 5.5E-13 120.5 25.3 287 138-446 29-357 (394)
27 KOG4237 Extracellular matrix p 99.0 1.2E-11 2.6E-16 134.7 -4.4 138 499-639 57-199 (498)
28 KOG4341 F-box protein containi 99.0 7.5E-12 1.6E-16 137.6 -6.6 199 808-1038 162-360 (483)
29 KOG4237 Extracellular matrix p 99.0 3.7E-11 8.1E-16 130.9 -1.3 131 476-608 56-193 (498)
30 PF01637 Arch_ATPase: Archaeal 99.0 1.8E-09 4E-14 120.5 10.5 194 141-337 1-233 (234)
31 PF05729 NACHT: NACHT domain 99.0 3.9E-09 8.3E-14 110.8 11.7 143 161-308 1-163 (166)
32 KOG0532 Leucine-rich repeat (L 98.9 1.8E-10 3.9E-15 131.3 -3.2 176 490-683 77-254 (722)
33 KOG1259 Nischarin, modulator o 98.8 4.1E-10 8.9E-15 117.9 -0.4 135 533-680 282-416 (490)
34 TIGR00635 ruvB Holliday juncti 98.8 2.4E-07 5.3E-12 107.6 21.1 189 138-340 3-203 (305)
35 PF14580 LRR_9: Leucine-rich r 98.8 3.5E-09 7.7E-14 108.5 4.7 130 532-671 16-148 (175)
36 PF14580 LRR_9: Leucine-rich r 98.8 5E-09 1.1E-13 107.5 5.5 122 543-677 5-127 (175)
37 TIGR02928 orc1/cdc6 family rep 98.8 4.4E-07 9.5E-12 108.6 22.4 197 139-335 15-243 (365)
38 PRK00080 ruvB Holliday junctio 98.8 3.7E-07 8E-12 106.6 20.5 277 135-447 21-310 (328)
39 cd00116 LRR_RI Leucine-rich re 98.7 5.7E-09 1.2E-13 122.7 3.2 131 508-640 49-205 (319)
40 cd00116 LRR_RI Leucine-rich re 98.7 1.7E-08 3.8E-13 118.6 6.2 177 490-676 53-263 (319)
41 COG2256 MGS1 ATPase related to 98.7 1.5E-06 3.3E-11 96.8 19.6 255 135-419 20-301 (436)
42 PRK13342 recombination factor 98.6 3.9E-07 8.4E-12 109.7 15.7 180 136-341 9-199 (413)
43 PTZ00112 origin recognition co 98.6 2.5E-06 5.4E-11 104.1 20.2 203 138-343 754-987 (1164)
44 KOG0532 Leucine-rich repeat (L 98.6 2.6E-09 5.5E-14 122.1 -4.7 172 493-682 55-230 (722)
45 KOG1259 Nischarin, modulator o 98.5 8.6E-09 1.9E-13 108.2 -1.4 127 510-641 284-412 (490)
46 PRK06893 DNA replication initi 98.5 9.2E-07 2E-11 97.1 13.4 153 159-340 38-205 (229)
47 PRK07003 DNA polymerase III su 98.5 4.2E-06 9.1E-11 102.2 19.3 181 135-337 12-220 (830)
48 COG4886 Leucine-rich repeat (L 98.5 1.4E-07 3E-12 114.3 5.8 175 488-679 116-293 (394)
49 KOG2028 ATPase related to the 98.4 2.7E-06 5.8E-11 92.4 13.6 151 136-308 135-294 (554)
50 PRK12402 replication factor C 98.4 3.9E-06 8.5E-11 99.3 16.0 197 137-337 13-225 (337)
51 PRK14961 DNA polymerase III su 98.4 6.4E-06 1.4E-10 97.2 17.5 194 136-337 13-219 (363)
52 PRK14949 DNA polymerase III su 98.4 3E-06 6.4E-11 105.7 14.8 186 136-339 13-221 (944)
53 PF13173 AAA_14: AAA domain 98.4 6.4E-07 1.4E-11 88.7 6.5 120 161-300 3-127 (128)
54 KOG3207 Beta-tubulin folding c 98.4 8.4E-08 1.8E-12 106.9 0.2 213 1070-1293 119-333 (505)
55 PTZ00202 tuzin; Provisional 98.3 2.6E-05 5.6E-10 88.7 19.1 165 134-308 257-434 (550)
56 PLN03025 replication factor C 98.3 6.3E-06 1.4E-10 95.8 15.1 183 136-334 10-196 (319)
57 PRK12323 DNA polymerase III su 98.3 5.7E-06 1.2E-10 99.8 14.6 201 135-338 12-225 (700)
58 TIGR02903 spore_lon_C ATP-depe 98.3 5.7E-05 1.2E-09 94.7 24.2 172 137-309 152-367 (615)
59 TIGR03420 DnaA_homol_Hda DnaA 98.3 3.6E-06 7.8E-11 93.2 12.1 170 143-340 21-203 (226)
60 PRK14960 DNA polymerase III su 98.3 7.6E-06 1.6E-10 99.1 15.4 195 135-337 11-218 (702)
61 PRK14963 DNA polymerase III su 98.3 1.2E-05 2.6E-10 97.8 17.3 191 136-335 11-214 (504)
62 PF13401 AAA_22: AAA domain; P 98.3 1.8E-06 4E-11 86.2 8.5 116 159-276 3-125 (131)
63 PF05496 RuvB_N: Holliday junc 98.3 6E-06 1.3E-10 86.4 12.2 176 135-340 20-223 (233)
64 PRK04195 replication factor C 98.3 3.5E-05 7.5E-10 94.8 20.9 184 136-342 11-206 (482)
65 PRK06645 DNA polymerase III su 98.3 1.5E-05 3.2E-10 96.4 17.2 196 135-335 17-226 (507)
66 COG1474 CDC6 Cdc6-related prot 98.3 5.2E-05 1.1E-09 88.3 20.8 196 141-339 19-239 (366)
67 PRK14956 DNA polymerase III su 98.3 6.7E-06 1.5E-10 97.0 13.2 192 135-334 14-218 (484)
68 PRK05564 DNA polymerase III su 98.3 1.6E-05 3.5E-10 92.2 16.3 176 139-336 4-188 (313)
69 COG4886 Leucine-rich repeat (L 98.3 8E-07 1.7E-11 107.6 5.7 167 508-690 114-282 (394)
70 PRK14962 DNA polymerase III su 98.3 1.6E-05 3.6E-10 95.8 16.6 189 135-341 10-222 (472)
71 PRK00440 rfc replication facto 98.2 2.1E-05 4.7E-10 92.2 17.2 184 136-337 14-202 (319)
72 PRK14957 DNA polymerase III su 98.2 1.5E-05 3.3E-10 96.8 16.0 185 136-338 13-221 (546)
73 cd00009 AAA The AAA+ (ATPases 98.2 7.1E-06 1.5E-10 83.9 11.4 122 143-278 2-131 (151)
74 PRK15386 type III secretion pr 98.2 3.6E-06 7.8E-11 96.8 8.3 158 1098-1300 52-214 (426)
75 PRK14951 DNA polymerase III su 98.2 3.1E-05 6.8E-10 95.5 16.9 197 136-337 13-224 (618)
76 PRK14964 DNA polymerase III su 98.2 2.7E-05 5.9E-10 93.2 15.9 181 136-334 10-213 (491)
77 PRK09376 rho transcription ter 98.2 4.4E-06 9.5E-11 94.9 8.6 90 161-251 170-268 (416)
78 PRK13341 recombination factor 98.2 1.6E-05 3.5E-10 100.4 14.1 171 136-333 25-212 (725)
79 PRK08691 DNA polymerase III su 98.1 1.8E-05 3.9E-10 96.9 13.8 180 135-336 12-218 (709)
80 KOG3207 Beta-tubulin folding c 98.1 3.7E-07 7.9E-12 101.9 -0.6 187 487-679 120-317 (505)
81 cd01128 rho_factor Transcripti 98.1 6E-06 1.3E-10 90.6 8.7 92 159-251 15-115 (249)
82 COG3899 Predicted ATPase [Gene 98.1 9.1E-05 2E-09 96.2 20.5 254 141-402 2-325 (849)
83 COG3903 Predicted ATPase [Gene 98.1 7.1E-06 1.5E-10 92.5 8.8 287 159-469 13-316 (414)
84 PRK14955 DNA polymerase III su 98.1 2.5E-05 5.4E-10 93.4 13.9 201 136-337 13-227 (397)
85 TIGR00678 holB DNA polymerase 98.1 4.9E-05 1.1E-09 81.1 14.7 160 150-334 3-187 (188)
86 PRK07994 DNA polymerase III su 98.1 4E-05 8.7E-10 94.7 15.6 195 136-338 13-220 (647)
87 PRK14958 DNA polymerase III su 98.1 3E-05 6.5E-10 94.6 14.3 184 135-336 12-218 (509)
88 PRK05896 DNA polymerase III su 98.1 4E-05 8.8E-10 93.1 15.2 197 135-339 12-222 (605)
89 PLN03150 hypothetical protein; 98.1 6.7E-06 1.5E-10 104.1 9.0 104 536-640 419-527 (623)
90 PRK15386 type III secretion pr 98.1 4.8E-06 1E-10 95.8 6.9 140 1118-1297 48-188 (426)
91 PRK14969 DNA polymerase III su 98.1 9.3E-05 2E-09 91.1 18.6 181 136-338 13-221 (527)
92 PRK07471 DNA polymerase III su 98.1 9.5E-05 2.1E-09 86.4 17.4 196 135-338 15-238 (365)
93 PRK07940 DNA polymerase III su 98.1 7.1E-05 1.5E-09 88.1 16.4 186 138-337 4-212 (394)
94 PRK08727 hypothetical protein; 98.1 3.9E-05 8.5E-10 84.5 13.4 160 147-335 28-201 (233)
95 PF13855 LRR_8: Leucine rich r 98.1 4E-06 8.7E-11 70.6 4.2 59 510-569 1-60 (61)
96 PRK09112 DNA polymerase III su 98.1 8.4E-05 1.8E-09 86.3 16.3 199 134-338 18-240 (351)
97 TIGR02397 dnaX_nterm DNA polym 98.0 0.00011 2.3E-09 87.7 17.6 184 137-339 12-219 (355)
98 PF13855 LRR_8: Leucine rich r 98.0 3.9E-06 8.4E-11 70.7 3.5 58 581-639 2-60 (61)
99 PLN03150 hypothetical protein; 98.0 8.8E-06 1.9E-10 103.0 8.3 104 559-674 419-526 (623)
100 PRK08084 DNA replication initi 98.0 6.3E-05 1.4E-09 83.0 13.7 165 146-339 31-210 (235)
101 PF13191 AAA_16: AAA ATPase do 98.0 1.7E-05 3.8E-10 84.7 8.5 48 140-187 1-51 (185)
102 PRK14959 DNA polymerase III su 98.0 7.9E-05 1.7E-09 91.2 14.8 199 136-342 13-225 (624)
103 TIGR01242 26Sp45 26S proteasom 98.0 0.00013 2.8E-09 86.6 16.2 176 135-332 118-328 (364)
104 PRK14971 DNA polymerase III su 97.9 0.00016 3.6E-09 90.2 17.3 180 137-335 15-219 (614)
105 PRK09087 hypothetical protein; 97.9 0.00011 2.4E-09 80.2 13.5 142 159-338 43-195 (226)
106 PRK09111 DNA polymerase III su 97.9 0.00016 3.4E-09 89.7 16.5 198 135-337 20-232 (598)
107 KOG0989 Replication factor C, 97.9 4E-05 8.7E-10 82.5 9.6 185 135-332 32-224 (346)
108 TIGR00767 rho transcription te 97.9 3.5E-05 7.7E-10 88.3 9.8 91 160-251 168-267 (415)
109 PRK08451 DNA polymerase III su 97.9 0.00022 4.9E-09 86.3 17.0 181 136-338 11-218 (535)
110 PRK07133 DNA polymerase III su 97.9 0.0002 4.3E-09 89.1 16.8 179 136-337 15-218 (725)
111 PRK14970 DNA polymerase III su 97.9 0.00021 4.5E-09 85.3 16.6 180 136-333 14-204 (367)
112 PRK14954 DNA polymerase III su 97.9 0.00018 3.9E-09 89.2 16.4 197 136-333 13-223 (620)
113 PRK07764 DNA polymerase III su 97.9 0.00016 3.5E-09 92.6 16.4 177 136-335 12-218 (824)
114 PRK06305 DNA polymerase III su 97.9 0.00026 5.7E-09 85.5 16.5 179 136-333 14-217 (451)
115 KOG2227 Pre-initiation complex 97.9 0.0005 1.1E-08 78.5 17.1 194 137-330 148-360 (529)
116 PRK14952 DNA polymerase III su 97.8 0.00028 6.1E-09 86.9 16.5 198 136-341 10-223 (584)
117 PF14516 AAA_35: AAA-like doma 97.8 0.00084 1.8E-08 78.2 19.6 201 137-345 9-246 (331)
118 PRK14950 DNA polymerase III su 97.8 0.00032 7E-09 88.0 16.9 195 137-338 14-221 (585)
119 PF05621 TniB: Bacterial TniB 97.8 0.0004 8.7E-09 76.6 14.7 188 145-332 43-255 (302)
120 PRK14087 dnaA chromosomal repl 97.8 0.00042 9.2E-09 83.7 16.1 166 161-341 142-322 (450)
121 TIGR02639 ClpA ATP-dependent C 97.8 0.00024 5.1E-09 92.0 14.9 159 136-308 179-358 (731)
122 KOG1859 Leucine-rich repeat pr 97.8 3.7E-07 7.9E-12 107.3 -9.8 129 535-677 164-293 (1096)
123 KOG2120 SCF ubiquitin ligase, 97.8 1.5E-06 3.3E-11 92.0 -4.3 186 1072-1297 185-374 (419)
124 PRK14953 DNA polymerase III su 97.8 0.00074 1.6E-08 82.1 17.9 181 136-338 13-220 (486)
125 PRK03992 proteasome-activating 97.7 0.00027 5.9E-09 84.1 14.0 173 137-331 129-336 (389)
126 PRK08903 DnaA regulatory inact 97.7 0.00027 5.8E-09 78.1 12.8 164 147-342 28-203 (227)
127 PRK14948 DNA polymerase III su 97.7 0.00066 1.4E-08 84.9 17.5 197 136-338 13-222 (620)
128 KOG1859 Leucine-rich repeat pr 97.7 2.7E-06 6E-11 100.2 -3.3 102 559-676 165-267 (1096)
129 PHA02544 44 clamp loader, smal 97.7 0.00019 4.2E-09 83.8 11.9 149 135-306 17-171 (316)
130 TIGR02881 spore_V_K stage V sp 97.7 0.00021 4.6E-09 80.5 11.8 135 159-309 41-192 (261)
131 KOG0531 Protein phosphatase 1, 97.7 4.2E-06 9.1E-11 101.3 -2.3 105 532-639 92-197 (414)
132 TIGR03689 pup_AAA proteasome A 97.7 0.00044 9.6E-09 83.4 14.8 162 136-310 179-380 (512)
133 PF00308 Bac_DnaA: Bacterial d 97.7 0.00018 4E-09 78.2 10.1 161 160-337 34-207 (219)
134 PRK05563 DNA polymerase III su 97.7 0.00091 2E-08 83.1 17.5 193 135-335 12-217 (559)
135 PRK06647 DNA polymerase III su 97.7 0.00093 2E-08 82.6 17.4 195 135-337 12-219 (563)
136 PRK11331 5-methylcytosine-spec 97.7 0.00012 2.6E-09 85.5 9.1 108 139-251 175-284 (459)
137 KOG2120 SCF ubiquitin ligase, 97.7 4.1E-06 9E-11 88.8 -2.8 40 809-849 312-351 (419)
138 PF12799 LRR_4: Leucine Rich r 97.7 4.3E-05 9.4E-10 58.7 3.4 38 536-573 2-39 (44)
139 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00046 1E-08 89.8 14.7 181 135-330 183-388 (852)
140 KOG0531 Protein phosphatase 1, 97.6 6.5E-06 1.4E-10 99.7 -2.1 101 536-640 73-174 (414)
141 CHL00181 cbbX CbbX; Provisiona 97.6 0.0011 2.4E-08 75.2 15.7 133 161-309 60-210 (287)
142 PRK05642 DNA replication initi 97.6 0.00034 7.3E-09 77.1 11.2 152 161-340 46-210 (234)
143 TIGR02880 cbbX_cfxQ probable R 97.6 0.0012 2.5E-08 75.1 15.6 132 162-309 60-209 (284)
144 CHL00095 clpC Clp protease ATP 97.6 0.00055 1.2E-08 89.8 14.7 158 137-308 177-354 (821)
145 KOG1947 Leucine rich repeat pr 97.6 5.9E-06 1.3E-10 103.5 -3.6 95 939-1037 187-282 (482)
146 PRK14965 DNA polymerase III su 97.6 0.00061 1.3E-08 85.1 14.1 195 136-338 13-221 (576)
147 KOG1909 Ran GTPase-activating 97.6 1.7E-05 3.8E-10 86.6 0.4 89 579-675 91-197 (382)
148 COG2255 RuvB Holliday junction 97.6 0.0083 1.8E-07 64.5 19.7 175 135-338 22-223 (332)
149 PF12799 LRR_4: Leucine Rich r 97.5 0.0001 2.3E-09 56.6 4.1 39 581-620 2-40 (44)
150 TIGR00362 DnaA chromosomal rep 97.5 0.0019 4.2E-08 78.0 17.2 157 161-335 137-307 (405)
151 PRK07399 DNA polymerase III su 97.5 0.0017 3.7E-08 74.5 15.8 195 138-337 3-220 (314)
152 COG1373 Predicted ATPase (AAA+ 97.5 0.0032 7E-08 74.9 17.7 135 143-302 21-161 (398)
153 PTZ00454 26S protease regulato 97.5 0.0024 5.3E-08 75.6 16.3 175 135-331 141-350 (398)
154 KOG3665 ZYG-1-like serine/thre 97.4 7.3E-05 1.6E-09 94.1 3.6 57 556-612 171-229 (699)
155 PRK05707 DNA polymerase III su 97.4 0.0029 6.3E-08 73.0 16.3 167 160-338 22-203 (328)
156 PRK00149 dnaA chromosomal repl 97.4 0.0037 7.9E-08 76.6 17.3 157 160-334 148-318 (450)
157 KOG2982 Uncharacterized conser 97.4 0.00012 2.6E-09 78.0 3.6 203 1097-1315 70-284 (418)
158 KOG3665 ZYG-1-like serine/thre 97.4 9.6E-05 2.1E-09 93.1 3.5 125 488-613 122-260 (699)
159 KOG2543 Origin recognition com 97.4 0.00095 2.1E-08 74.4 10.5 162 139-306 6-191 (438)
160 PF05673 DUF815: Protein of un 97.4 0.007 1.5E-07 64.8 16.6 121 135-281 23-155 (249)
161 CHL00176 ftsH cell division pr 97.3 0.0021 4.6E-08 80.4 14.7 171 139-331 183-387 (638)
162 PRK14088 dnaA chromosomal repl 97.3 0.002 4.3E-08 77.9 14.1 158 161-334 131-301 (440)
163 KOG2982 Uncharacterized conser 97.3 0.00011 2.3E-09 78.4 2.6 69 782-853 198-266 (418)
164 PRK06620 hypothetical protein; 97.3 0.00082 1.8E-08 72.7 9.5 135 161-335 45-186 (214)
165 TIGR00602 rad24 checkpoint pro 97.3 0.00078 1.7E-08 83.5 10.3 51 135-185 80-135 (637)
166 PTZ00361 26 proteosome regulat 97.3 0.0016 3.5E-08 77.5 12.2 155 136-310 180-369 (438)
167 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0028 6E-08 83.5 15.5 159 136-308 170-349 (852)
168 PRK10865 protein disaggregatio 97.3 0.0018 3.9E-08 84.8 13.6 158 136-308 175-354 (857)
169 PRK11034 clpA ATP-dependent Cl 97.3 0.00078 1.7E-08 85.9 9.6 159 137-308 184-362 (758)
170 PF00004 AAA: ATPase family as 97.2 0.00087 1.9E-08 66.9 8.0 69 163-251 1-70 (132)
171 PRK14086 dnaA chromosomal repl 97.2 0.0048 1E-07 75.5 15.5 156 161-334 315-484 (617)
172 smart00382 AAA ATPases associa 97.2 0.00087 1.9E-08 67.8 8.0 89 161-252 3-91 (148)
173 COG0466 Lon ATP-dependent Lon 97.2 0.0035 7.5E-08 75.8 13.8 156 141-308 325-508 (782)
174 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0044 9.6E-08 73.0 14.2 152 137-308 188-374 (802)
175 KOG1947 Leucine rich repeat pr 97.2 7.1E-05 1.5E-09 93.7 -0.4 41 1262-1302 403-443 (482)
176 TIGR01241 FtsH_fam ATP-depende 97.2 0.0032 7E-08 78.0 14.2 174 136-331 52-259 (495)
177 KOG0731 AAA+-type ATPase conta 97.1 0.0048 1E-07 76.3 14.1 170 144-334 319-520 (774)
178 PRK10536 hypothetical protein; 97.1 0.0035 7.6E-08 68.0 11.4 56 137-194 53-108 (262)
179 COG1222 RPT1 ATP-dependent 26S 97.1 0.011 2.4E-07 65.7 15.4 186 134-343 146-372 (406)
180 PF10443 RNA12: RNA12 protein; 97.1 0.013 2.8E-07 67.8 16.6 194 144-347 1-287 (431)
181 COG1223 Predicted ATPase (AAA+ 97.1 0.006 1.3E-07 64.2 12.3 170 138-331 120-318 (368)
182 KOG2004 Mitochondrial ATP-depe 97.1 0.02 4.4E-07 68.9 18.3 155 140-308 412-596 (906)
183 PF13177 DNA_pol3_delta2: DNA 97.1 0.0037 7.9E-08 64.5 10.9 137 143-296 1-162 (162)
184 PRK08769 DNA polymerase III su 97.1 0.012 2.7E-07 67.1 16.1 172 146-337 11-207 (319)
185 PRK08058 DNA polymerase III su 97.1 0.009 2E-07 69.5 15.0 159 141-306 7-180 (329)
186 KOG1644 U2-associated snRNP A' 97.0 0.00087 1.9E-08 68.1 5.4 82 510-594 42-127 (233)
187 PRK12422 chromosomal replicati 97.0 0.0061 1.3E-07 73.5 13.7 152 161-331 142-306 (445)
188 KOG1909 Ran GTPase-activating 97.0 0.0003 6.5E-09 77.3 2.0 161 508-676 90-283 (382)
189 PRK06090 DNA polymerase III su 97.0 0.033 7.1E-07 63.7 18.5 176 146-338 10-201 (319)
190 CHL00195 ycf46 Ycf46; Provisio 97.0 0.0065 1.4E-07 73.7 13.6 176 137-332 226-429 (489)
191 TIGR00763 lon ATP-dependent pr 97.0 0.02 4.4E-07 74.8 19.0 46 140-185 321-372 (775)
192 COG3267 ExeA Type II secretory 97.0 0.029 6.2E-07 59.9 16.0 180 157-340 48-247 (269)
193 PRK06871 DNA polymerase III su 96.9 0.021 4.6E-07 65.4 16.1 176 147-335 10-200 (325)
194 PRK08118 topology modulation p 96.9 0.00049 1.1E-08 71.4 2.6 35 161-195 2-37 (167)
195 KOG0741 AAA+-type ATPase [Post 96.9 0.012 2.7E-07 68.0 13.5 146 158-328 536-704 (744)
196 PRK12608 transcription termina 96.9 0.0058 1.3E-07 70.1 11.0 103 148-251 120-232 (380)
197 KOG0743 AAA+-type ATPase [Post 96.9 0.15 3.3E-06 59.1 21.9 86 269-358 339-432 (457)
198 PRK08116 hypothetical protein; 96.8 0.0025 5.4E-08 71.6 7.4 101 161-276 115-220 (268)
199 PRK10865 protein disaggregatio 96.8 0.053 1.2E-06 71.3 20.3 46 140-185 569-623 (857)
200 COG2812 DnaX DNA polymerase II 96.8 0.0074 1.6E-07 72.4 11.2 190 136-333 13-215 (515)
201 TIGR02640 gas_vesic_GvpN gas v 96.8 0.032 7E-07 62.8 15.8 57 145-208 8-64 (262)
202 KOG1644 U2-associated snRNP A' 96.7 0.0023 5E-08 65.1 5.7 105 559-673 43-150 (233)
203 KOG4579 Leucine-rich repeat (L 96.7 0.00012 2.5E-09 69.2 -3.3 100 512-612 29-132 (177)
204 TIGR01243 CDC48 AAA family ATP 96.7 0.02 4.3E-07 74.7 15.3 173 138-332 452-657 (733)
205 KOG4579 Leucine-rich repeat (L 96.7 0.00013 2.9E-09 68.8 -3.3 106 492-598 31-141 (177)
206 PF04665 Pox_A32: Poxvirus A32 96.7 0.0059 1.3E-07 66.1 8.6 35 162-198 15-49 (241)
207 COG0593 DnaA ATPase involved i 96.7 0.019 4.1E-07 67.0 13.3 132 159-308 112-257 (408)
208 PRK08939 primosomal protein Dn 96.7 0.028 6E-07 64.3 14.6 115 143-275 135-259 (306)
209 TIGR02639 ClpA ATP-dependent C 96.7 0.012 2.6E-07 76.4 13.1 103 139-251 454-565 (731)
210 PF02562 PhoH: PhoH-like prote 96.6 0.0044 9.5E-08 65.5 7.2 126 146-277 7-156 (205)
211 COG0542 clpA ATP-binding subun 96.6 0.025 5.4E-07 70.8 14.8 105 139-251 491-605 (786)
212 KOG0991 Replication factor C, 96.6 0.0041 9E-08 64.2 6.6 103 135-251 23-125 (333)
213 PRK06964 DNA polymerase III su 96.6 0.061 1.3E-06 62.2 16.9 105 225-338 114-225 (342)
214 KOG0730 AAA+-type ATPase [Post 96.6 0.031 6.7E-07 67.2 14.3 154 137-310 432-617 (693)
215 PRK07993 DNA polymerase III su 96.6 0.044 9.5E-07 63.5 15.6 177 146-335 9-201 (334)
216 KOG2035 Replication factor C, 96.6 0.021 4.6E-07 61.0 11.5 228 139-381 13-281 (351)
217 PRK07261 topology modulation p 96.5 0.0062 1.3E-07 63.5 7.5 34 162-195 2-36 (171)
218 PRK12727 flagellar biosynthesi 96.5 0.057 1.2E-06 64.8 15.8 88 160-249 350-438 (559)
219 KOG0739 AAA+-type ATPase [Post 96.5 0.051 1.1E-06 58.5 13.7 182 139-342 133-348 (439)
220 KOG0733 Nuclear AAA ATPase (VC 96.5 0.048 1E-06 64.7 14.6 131 160-310 545-694 (802)
221 COG5238 RNA1 Ran GTPase-activa 96.4 0.0016 3.5E-08 68.8 2.1 39 576-614 88-131 (388)
222 PRK10787 DNA-binding ATP-depen 96.4 0.0078 1.7E-07 77.6 8.7 157 140-308 323-506 (784)
223 TIGR03345 VI_ClpV1 type VI sec 96.4 0.0089 1.9E-07 78.1 9.2 106 139-251 566-680 (852)
224 KOG0736 Peroxisome assembly fa 96.4 0.2 4.2E-06 61.5 19.3 95 137-251 670-776 (953)
225 PRK08181 transposase; Validate 96.4 0.0056 1.2E-07 68.2 6.3 105 153-277 101-209 (269)
226 PF00448 SRP54: SRP54-type pro 96.4 0.018 3.9E-07 61.2 9.9 87 161-249 2-93 (196)
227 TIGR01243 CDC48 AAA family ATP 96.3 0.027 5.8E-07 73.5 12.9 174 138-333 177-382 (733)
228 PHA00729 NTP-binding motif con 96.3 0.021 4.5E-07 61.2 9.6 35 150-184 7-41 (226)
229 TIGR02237 recomb_radB DNA repa 96.3 0.016 3.4E-07 63.1 9.0 48 160-210 12-59 (209)
230 PRK04132 replication factor C 96.2 0.065 1.4E-06 68.8 15.3 156 166-338 570-731 (846)
231 PRK12377 putative replication 96.2 0.024 5.3E-07 62.4 10.0 75 159-250 100-174 (248)
232 smart00763 AAA_PrkA PrkA AAA d 96.2 0.0063 1.4E-07 69.6 5.5 46 140-185 52-103 (361)
233 KOG0734 AAA+-type ATPase conta 96.1 0.013 2.8E-07 68.0 7.6 93 139-251 307-408 (752)
234 TIGR02902 spore_lonB ATP-depen 96.1 0.018 3.8E-07 71.5 9.5 49 137-185 63-111 (531)
235 TIGR03499 FlhF flagellar biosy 96.1 0.045 9.7E-07 62.2 11.8 88 159-248 193-281 (282)
236 TIGR03346 chaperone_ClpB ATP-d 96.1 0.02 4.4E-07 75.5 10.2 116 139-261 565-691 (852)
237 cd01123 Rad51_DMC1_radA Rad51_ 96.1 0.017 3.7E-07 64.2 8.3 90 160-250 19-126 (235)
238 COG1875 NYN ribonuclease and A 96.1 0.036 7.8E-07 61.9 10.2 55 140-194 225-280 (436)
239 PRK06526 transposase; Provisio 96.1 0.0063 1.4E-07 67.5 4.7 74 160-251 98-171 (254)
240 CHL00095 clpC Clp protease ATP 96.0 0.023 5.1E-07 74.7 10.4 106 139-251 509-623 (821)
241 PRK08699 DNA polymerase III su 96.0 0.096 2.1E-06 60.5 14.1 165 148-334 10-202 (325)
242 PF01695 IstB_IS21: IstB-like 96.0 0.011 2.4E-07 61.9 5.8 75 159-251 46-120 (178)
243 PLN00020 ribulose bisphosphate 96.0 0.12 2.5E-06 59.0 14.0 29 158-186 146-174 (413)
244 KOG0735 AAA+-type ATPase [Post 96.0 0.051 1.1E-06 65.5 11.7 157 161-336 432-614 (952)
245 PRK11034 clpA ATP-dependent Cl 96.0 0.018 3.9E-07 73.7 8.8 102 140-251 459-569 (758)
246 COG0470 HolB ATPase involved i 95.9 0.034 7.3E-07 65.4 10.6 138 141-294 3-167 (325)
247 PF13207 AAA_17: AAA domain; P 95.9 0.0065 1.4E-07 59.5 3.7 23 162-184 1-23 (121)
248 KOG0744 AAA+-type ATPase [Post 95.9 0.016 3.4E-07 63.3 6.3 39 160-198 177-217 (423)
249 TIGR01425 SRP54_euk signal rec 95.9 0.4 8.6E-06 57.0 18.5 38 159-198 99-136 (429)
250 PRK11889 flhF flagellar biosyn 95.8 0.065 1.4E-06 61.8 11.5 90 159-250 240-331 (436)
251 PRK14722 flhF flagellar biosyn 95.8 0.03 6.6E-07 65.1 9.1 90 160-251 137-227 (374)
252 TIGR02012 tigrfam_recA protein 95.8 0.036 7.8E-07 63.2 9.4 85 159-250 54-144 (321)
253 KOG2739 Leucine-rich acidic nu 95.8 0.0046 9.9E-08 66.0 1.9 83 557-641 42-129 (260)
254 PRK00771 signal recognition pa 95.8 0.31 6.7E-06 58.4 17.4 87 159-249 94-185 (437)
255 KOG1514 Origin recognition com 95.8 0.39 8.4E-06 58.6 17.9 198 139-341 396-624 (767)
256 PRK06696 uridine kinase; Valid 95.8 0.014 3.1E-07 63.9 5.9 43 143-185 2-47 (223)
257 PRK07952 DNA replication prote 95.8 0.054 1.2E-06 59.6 10.2 91 145-251 82-174 (244)
258 PRK09183 transposase/IS protei 95.7 0.012 2.6E-07 65.8 5.1 25 161-185 103-127 (259)
259 cd01133 F1-ATPase_beta F1 ATP 95.7 0.059 1.3E-06 59.7 10.3 89 161-251 70-175 (274)
260 PF07693 KAP_NTPase: KAP famil 95.7 0.35 7.6E-06 56.8 17.7 43 145-187 2-47 (325)
261 KOG0727 26S proteasome regulat 95.7 0.29 6.3E-06 51.5 14.3 94 138-251 154-260 (408)
262 COG2884 FtsE Predicted ATPase 95.6 0.035 7.6E-07 56.3 7.3 28 159-186 27-54 (223)
263 cd00983 recA RecA is a bacter 95.6 0.046 1E-06 62.3 9.3 84 160-250 55-144 (325)
264 cd01393 recA_like RecA is a b 95.6 0.056 1.2E-06 59.6 9.9 49 160-208 19-71 (226)
265 COG0464 SpoVK ATPases of the A 95.6 0.13 2.9E-06 64.0 14.3 132 159-310 275-425 (494)
266 KOG2123 Uncharacterized conser 95.6 0.00061 1.3E-08 72.2 -5.4 105 557-669 18-123 (388)
267 PRK09354 recA recombinase A; P 95.5 0.053 1.1E-06 62.3 9.4 84 160-250 60-149 (349)
268 COG0542 clpA ATP-binding subun 95.5 0.11 2.4E-06 65.3 12.8 160 137-308 168-346 (786)
269 COG2607 Predicted ATPase (AAA+ 95.5 0.077 1.7E-06 55.9 9.4 116 136-277 57-183 (287)
270 KOG1969 DNA replication checkp 95.5 0.025 5.3E-07 68.5 6.7 75 159-251 325-399 (877)
271 cd01120 RecA-like_NTPases RecA 95.5 0.069 1.5E-06 55.3 9.6 40 162-203 1-40 (165)
272 PF03215 Rad17: Rad17 cell cyc 95.5 0.066 1.4E-06 65.5 10.6 53 141-197 21-78 (519)
273 PRK09361 radB DNA repair and r 95.5 0.049 1.1E-06 60.0 8.8 46 160-208 23-68 (225)
274 KOG2739 Leucine-rich acidic nu 95.4 0.0077 1.7E-07 64.3 2.1 84 531-614 61-154 (260)
275 TIGR02238 recomb_DMC1 meiotic 95.4 0.051 1.1E-06 62.3 8.9 58 160-218 96-157 (313)
276 TIGR02858 spore_III_AA stage I 95.4 0.08 1.7E-06 59.2 10.0 123 149-281 99-233 (270)
277 PRK09270 nucleoside triphospha 95.4 0.089 1.9E-06 58.0 10.4 29 158-186 31-59 (229)
278 COG1484 DnaC DNA replication p 95.3 0.062 1.3E-06 59.8 9.0 76 159-251 104-179 (254)
279 PF08423 Rad51: Rad51; InterP 95.3 0.066 1.4E-06 59.7 9.3 55 161-216 39-97 (256)
280 PRK04296 thymidine kinase; Pro 95.3 0.026 5.6E-07 60.1 5.6 110 161-278 3-117 (190)
281 PRK06921 hypothetical protein; 95.3 0.06 1.3E-06 60.4 8.7 71 159-248 116-186 (266)
282 COG1121 ZnuC ABC-type Mn/Zn tr 95.3 0.07 1.5E-06 58.1 8.7 119 161-281 31-203 (254)
283 PF06309 Torsin: Torsin; Inte 95.2 0.13 2.9E-06 49.2 9.5 45 140-184 26-77 (127)
284 PLN03187 meiotic recombination 95.2 0.071 1.5E-06 61.6 9.3 58 160-218 126-187 (344)
285 PTZ00494 tuzin-like protein; P 95.2 1 2.2E-05 52.1 17.8 164 136-308 368-544 (664)
286 PRK05541 adenylylsulfate kinas 95.2 0.043 9.4E-07 57.8 7.0 36 159-196 6-41 (176)
287 PRK06835 DNA replication prote 95.2 0.048 1E-06 62.9 7.8 100 161-276 184-288 (329)
288 KOG0738 AAA+-type ATPase [Post 95.2 0.24 5.2E-06 55.9 12.6 28 158-185 243-270 (491)
289 PRK10733 hflB ATP-dependent me 95.2 0.11 2.3E-06 66.4 11.6 149 161-331 186-356 (644)
290 PRK15455 PrkA family serine pr 95.1 0.025 5.5E-07 67.9 5.2 48 138-185 75-128 (644)
291 PRK12723 flagellar biosynthesi 95.1 0.15 3.4E-06 59.9 11.6 90 159-250 173-265 (388)
292 PRK12724 flagellar biosynthesi 94.9 0.089 1.9E-06 61.6 9.0 85 160-248 223-308 (432)
293 KOG0729 26S proteasome regulat 94.9 0.12 2.6E-06 54.7 8.8 48 138-185 176-236 (435)
294 TIGR03877 thermo_KaiC_1 KaiC d 94.9 0.16 3.4E-06 56.4 10.6 49 159-211 20-68 (237)
295 PRK14974 cell division protein 94.9 0.2 4.2E-06 57.9 11.5 90 159-251 139-234 (336)
296 PRK07132 DNA polymerase III su 94.9 0.54 1.2E-05 53.5 14.9 166 149-337 6-184 (299)
297 COG0468 RecA RecA/RadA recombi 94.8 0.15 3.3E-06 56.8 10.1 89 159-250 59-152 (279)
298 TIGR00554 panK_bact pantothena 94.8 0.14 3.1E-06 57.7 10.0 28 158-185 60-87 (290)
299 PRK05703 flhF flagellar biosyn 94.8 0.15 3.3E-06 61.2 10.7 88 160-249 221-309 (424)
300 KOG0728 26S proteasome regulat 94.7 0.32 7E-06 51.1 11.3 147 142-308 150-331 (404)
301 TIGR02236 recomb_radA DNA repa 94.7 0.13 2.7E-06 59.8 9.8 57 160-217 95-155 (310)
302 cd02025 PanK Pantothenate kina 94.7 0.13 2.8E-06 56.0 9.2 24 162-185 1-24 (220)
303 PRK12726 flagellar biosynthesi 94.7 0.16 3.5E-06 58.5 10.1 90 159-250 205-296 (407)
304 COG1419 FlhF Flagellar GTP-bin 94.7 0.25 5.3E-06 57.2 11.5 90 159-250 202-292 (407)
305 PF00006 ATP-synt_ab: ATP synt 94.7 0.084 1.8E-06 56.7 7.4 87 161-251 16-117 (215)
306 TIGR00959 ffh signal recogniti 94.7 0.31 6.8E-06 58.2 12.9 26 160-185 99-124 (428)
307 TIGR01359 UMP_CMP_kin_fam UMP- 94.6 0.079 1.7E-06 56.2 7.2 24 162-185 1-24 (183)
308 PRK08533 flagellar accessory p 94.6 0.15 3.3E-06 56.0 9.6 48 160-211 24-71 (230)
309 PRK10867 signal recognition pa 94.6 0.25 5.5E-06 59.0 12.0 28 159-186 99-126 (433)
310 KOG2228 Origin recognition com 94.6 0.35 7.5E-06 53.7 11.9 166 140-308 25-219 (408)
311 PRK04301 radA DNA repair and r 94.6 0.13 2.9E-06 59.6 9.6 58 159-217 101-162 (317)
312 TIGR02239 recomb_RAD51 DNA rep 94.6 0.12 2.6E-06 59.6 8.9 58 159-217 95-156 (316)
313 COG1618 Predicted nucleotide k 94.5 0.048 1E-06 53.8 4.6 30 161-191 6-35 (179)
314 cd01131 PilT Pilus retraction 94.5 0.06 1.3E-06 57.8 6.0 111 161-281 2-113 (198)
315 PLN03186 DNA repair protein RA 94.5 0.11 2.4E-06 60.1 8.5 59 159-218 122-184 (342)
316 COG0541 Ffh Signal recognition 94.5 2.1 4.6E-05 49.9 18.2 59 159-219 99-158 (451)
317 PRK06547 hypothetical protein; 94.5 0.052 1.1E-06 56.4 5.1 36 150-185 5-40 (172)
318 cd03115 SRP The signal recogni 94.5 0.14 2.9E-06 53.8 8.4 25 162-186 2-26 (173)
319 cd01394 radB RadB. The archaea 94.4 0.14 3.1E-06 56.0 8.8 43 159-203 18-60 (218)
320 PTZ00035 Rad51 protein; Provis 94.4 0.17 3.8E-06 58.7 9.9 58 159-217 117-178 (337)
321 PRK07667 uridine kinase; Provi 94.4 0.06 1.3E-06 57.5 5.5 37 149-185 4-42 (193)
322 TIGR00064 ftsY signal recognit 94.3 0.26 5.6E-06 55.5 10.7 90 158-250 70-165 (272)
323 cd03281 ABC_MSH5_euk MutS5 hom 94.3 0.051 1.1E-06 58.9 4.7 24 160-183 29-52 (213)
324 PRK14723 flhF flagellar biosyn 94.3 0.27 5.9E-06 62.2 11.6 88 160-249 185-273 (767)
325 PF07728 AAA_5: AAA domain (dy 94.2 0.09 1.9E-06 52.8 6.2 42 163-209 2-43 (139)
326 cd01121 Sms Sms (bacterial rad 94.2 0.13 2.8E-06 60.5 8.1 86 160-250 82-169 (372)
327 PRK04328 hypothetical protein; 94.2 0.21 4.5E-06 55.7 9.5 41 159-201 22-62 (249)
328 CHL00206 ycf2 Ycf2; Provisiona 94.2 0.32 6.9E-06 66.2 12.3 26 160-185 1630-1655(2281)
329 PRK06995 flhF flagellar biosyn 94.2 0.19 4.1E-06 60.7 9.5 88 160-249 256-344 (484)
330 PRK13531 regulatory ATPase Rav 94.1 0.072 1.5E-06 63.5 5.9 50 140-191 21-70 (498)
331 PRK14721 flhF flagellar biosyn 94.1 0.26 5.5E-06 58.6 10.4 88 160-249 191-279 (420)
332 PF13481 AAA_25: AAA domain; P 94.1 0.24 5.1E-06 53.1 9.5 42 161-202 33-82 (193)
333 COG1102 Cmk Cytidylate kinase 94.1 0.17 3.7E-06 50.1 7.3 45 162-219 2-46 (179)
334 COG4088 Predicted nucleotide k 94.1 0.032 6.8E-07 57.1 2.4 26 161-186 2-27 (261)
335 cd03214 ABC_Iron-Siderophores_ 94.1 0.2 4.3E-06 53.0 8.6 116 160-280 25-161 (180)
336 KOG2123 Uncharacterized conser 94.1 0.0034 7.3E-08 66.7 -4.6 59 511-573 20-78 (388)
337 PRK05917 DNA polymerase III su 94.0 0.8 1.7E-05 51.5 13.6 130 147-295 5-154 (290)
338 cd01135 V_A-ATPase_B V/A-type 94.0 0.31 6.7E-06 53.9 10.1 91 161-251 70-178 (276)
339 PF00485 PRK: Phosphoribulokin 94.0 0.048 1.1E-06 58.4 3.9 25 162-186 1-25 (194)
340 PF00154 RecA: recA bacterial 94.0 0.29 6.4E-06 55.7 10.2 85 160-251 53-143 (322)
341 PF13238 AAA_18: AAA domain; P 94.0 0.044 9.5E-07 54.2 3.3 22 163-184 1-22 (129)
342 COG3640 CooC CO dehydrogenase 94.0 0.095 2.1E-06 55.3 5.7 43 162-205 2-44 (255)
343 cd03247 ABCC_cytochrome_bd The 93.9 0.18 4E-06 53.1 8.1 25 161-185 29-53 (178)
344 cd02019 NK Nucleoside/nucleoti 93.9 0.047 1E-06 47.0 2.9 23 162-184 1-23 (69)
345 COG0465 HflB ATP-dependent Zn 93.8 0.34 7.3E-06 59.4 10.9 173 138-332 149-355 (596)
346 KOG0735 AAA+-type ATPase [Post 93.8 0.68 1.5E-05 56.4 13.0 148 161-332 702-870 (952)
347 PF00560 LRR_1: Leucine Rich R 93.8 0.025 5.4E-07 36.1 0.7 21 581-601 1-21 (22)
348 PRK05439 pantothenate kinase; 93.8 0.39 8.5E-06 54.6 10.7 28 158-185 84-111 (311)
349 COG0563 Adk Adenylate kinase a 93.8 0.1 2.2E-06 54.4 5.7 24 162-185 2-25 (178)
350 cd01124 KaiC KaiC is a circadi 93.7 0.2 4.2E-06 53.4 8.0 45 162-210 1-45 (187)
351 PF13306 LRR_5: Leucine rich r 93.7 0.13 2.7E-06 50.9 6.0 101 530-636 7-111 (129)
352 PRK10463 hydrogenase nickel in 93.7 0.53 1.2E-05 52.7 11.3 97 148-250 92-195 (290)
353 COG1428 Deoxynucleoside kinase 93.7 0.053 1.1E-06 56.4 3.2 26 160-185 4-29 (216)
354 PRK12597 F0F1 ATP synthase sub 93.6 0.31 6.8E-06 58.4 10.0 90 161-251 144-249 (461)
355 TIGR01069 mutS2 MutS2 family p 93.6 0.084 1.8E-06 68.2 5.6 185 158-358 320-521 (771)
356 PRK06851 hypothetical protein; 93.6 0.48 1E-05 55.1 11.1 43 158-201 212-254 (367)
357 PTZ00301 uridine kinase; Provi 93.5 0.067 1.4E-06 57.5 3.9 26 160-185 3-28 (210)
358 PF10236 DAP3: Mitochondrial r 93.5 3.2 7E-05 47.8 17.9 46 289-334 258-305 (309)
359 PF13671 AAA_33: AAA domain; P 93.5 0.063 1.4E-06 54.3 3.5 24 162-185 1-24 (143)
360 PRK08233 hypothetical protein; 93.5 0.062 1.3E-06 56.9 3.6 26 160-185 3-28 (182)
361 PF13306 LRR_5: Leucine rich r 93.5 0.2 4.3E-06 49.5 7.0 115 508-630 10-128 (129)
362 cd03228 ABCC_MRP_Like The MRP 93.5 0.18 3.9E-06 52.7 7.0 26 160-185 28-53 (171)
363 PRK06067 flagellar accessory p 93.4 0.41 8.8E-06 53.0 10.1 86 159-249 24-130 (234)
364 COG0194 Gmk Guanylate kinase [ 93.4 0.19 4.1E-06 51.4 6.6 25 160-184 4-28 (191)
365 COG0572 Udk Uridine kinase [Nu 93.4 0.075 1.6E-06 56.2 3.9 28 159-186 7-34 (218)
366 PF03308 ArgK: ArgK protein; 93.4 0.14 3E-06 55.5 5.8 57 147-203 14-72 (266)
367 PF01583 APS_kinase: Adenylyls 93.4 0.1 2.2E-06 52.6 4.6 34 161-196 3-36 (156)
368 cd02027 APSK Adenosine 5'-phos 93.4 0.38 8.1E-06 48.9 8.9 24 162-185 1-24 (149)
369 PRK05480 uridine/cytidine kina 93.3 0.074 1.6E-06 57.8 3.9 27 158-184 4-30 (209)
370 PF08433 KTI12: Chromatin asso 93.3 0.18 3.9E-06 56.5 7.0 26 161-186 2-27 (270)
371 PF03205 MobB: Molybdopterin g 93.3 0.13 2.9E-06 51.4 5.3 39 161-200 1-39 (140)
372 PF00560 LRR_1: Leucine Rich R 93.3 0.047 1E-06 34.8 1.3 22 536-557 1-22 (22)
373 cd03238 ABC_UvrA The excision 93.3 0.19 4.1E-06 52.5 6.6 23 160-182 21-43 (176)
374 cd03223 ABCD_peroxisomal_ALDP 93.3 0.34 7.4E-06 50.3 8.6 26 160-185 27-52 (166)
375 TIGR01360 aden_kin_iso1 adenyl 93.2 0.071 1.5E-06 56.8 3.6 26 159-184 2-27 (188)
376 PRK08972 fliI flagellum-specif 93.2 0.21 4.5E-06 59.1 7.6 88 160-251 162-264 (444)
377 PRK06762 hypothetical protein; 93.2 0.079 1.7E-06 55.1 3.7 25 160-184 2-26 (166)
378 TIGR00235 udk uridine kinase. 93.2 0.085 1.9E-06 57.1 4.1 27 159-185 5-31 (207)
379 PF00910 RNA_helicase: RNA hel 93.1 0.082 1.8E-06 50.2 3.5 23 163-185 1-23 (107)
380 KOG0652 26S proteasome regulat 93.1 1.3 2.7E-05 47.2 12.1 189 134-342 166-391 (424)
381 KOG0737 AAA+-type ATPase [Post 93.1 0.64 1.4E-05 52.6 10.7 52 138-191 91-156 (386)
382 KOG1051 Chaperone HSP104 and r 93.1 0.38 8.3E-06 61.5 10.1 103 139-251 562-672 (898)
383 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.1 0.28 6.1E-06 49.5 7.5 26 160-185 26-51 (144)
384 KOG2170 ATPase of the AAA+ sup 93.1 0.25 5.4E-06 54.1 7.2 46 140-185 83-135 (344)
385 PF14532 Sigma54_activ_2: Sigm 93.0 0.033 7.1E-07 55.9 0.5 25 161-185 22-46 (138)
386 TIGR03305 alt_F1F0_F1_bet alte 93.0 0.46 1E-05 56.6 10.1 90 161-251 139-244 (449)
387 KOG1532 GTPase XAB1, interacts 93.0 0.11 2.3E-06 55.6 4.1 59 159-217 18-85 (366)
388 PRK03839 putative kinase; Prov 93.0 0.082 1.8E-06 55.9 3.5 24 162-185 2-25 (180)
389 cd03216 ABC_Carb_Monos_I This 93.0 0.14 3.1E-06 53.0 5.2 114 160-281 26-146 (163)
390 PRK12678 transcription termina 93.0 0.33 7.1E-06 58.5 8.6 90 161-251 417-515 (672)
391 cd00544 CobU Adenosylcobinamid 92.9 0.34 7.3E-06 50.2 7.8 81 162-248 1-82 (169)
392 PTZ00088 adenylate kinase 1; P 92.9 0.28 6E-06 53.6 7.6 24 162-185 8-31 (229)
393 TIGR03878 thermo_KaiC_2 KaiC d 92.9 0.45 9.7E-06 53.4 9.4 39 160-200 36-74 (259)
394 PRK13949 shikimate kinase; Pro 92.9 0.11 2.3E-06 54.2 4.1 24 162-185 3-26 (169)
395 cd03222 ABC_RNaseL_inhibitor T 92.9 0.26 5.7E-06 51.4 7.0 26 160-185 25-50 (177)
396 PRK08927 fliI flagellum-specif 92.8 0.5 1.1E-05 56.2 10.0 89 159-251 157-260 (442)
397 PRK13765 ATP-dependent proteas 92.8 0.19 4.2E-06 63.0 6.9 79 135-217 27-105 (637)
398 PRK09280 F0F1 ATP synthase sub 92.7 0.6 1.3E-05 55.8 10.5 90 161-251 145-250 (463)
399 PRK06002 fliI flagellum-specif 92.7 0.41 8.8E-06 57.0 9.1 88 161-251 166-266 (450)
400 PRK00409 recombination and DNA 92.7 0.42 9.1E-06 62.1 10.1 179 158-358 325-526 (782)
401 PRK09519 recA DNA recombinatio 92.7 0.39 8.4E-06 61.1 9.3 84 159-249 59-148 (790)
402 COG4608 AppF ABC-type oligopep 92.7 0.42 9.1E-06 52.2 8.3 120 159-282 38-175 (268)
403 cd03283 ABC_MutS-like MutS-lik 92.6 0.28 6.1E-06 52.5 7.1 24 161-184 26-49 (199)
404 PF06745 KaiC: KaiC; InterPro 92.6 0.28 6.1E-06 54.0 7.4 86 160-249 19-125 (226)
405 cd00561 CobA_CobO_BtuR ATP:cor 92.6 0.92 2E-05 46.1 10.2 115 161-278 3-139 (159)
406 PRK05342 clpX ATP-dependent pr 92.6 0.16 3.5E-06 60.5 5.7 46 140-185 72-133 (412)
407 PRK00625 shikimate kinase; Pro 92.6 0.097 2.1E-06 54.5 3.3 24 162-185 2-25 (173)
408 PRK10416 signal recognition pa 92.6 0.93 2E-05 52.2 11.6 28 159-186 113-140 (318)
409 PRK13768 GTPase; Provisional 92.5 0.51 1.1E-05 52.7 9.2 37 160-198 2-38 (253)
410 PF12775 AAA_7: P-loop contain 92.5 0.12 2.6E-06 58.2 4.2 89 149-250 23-111 (272)
411 TIGR00390 hslU ATP-dependent p 92.5 0.32 6.9E-06 56.9 7.6 73 140-214 13-103 (441)
412 COG1066 Sms Predicted ATP-depe 92.5 0.3 6.5E-06 56.0 7.1 86 160-251 93-180 (456)
413 TIGR00750 lao LAO/AO transport 92.5 0.36 7.8E-06 55.5 8.1 30 158-187 32-61 (300)
414 KOG0927 Predicted transporter 92.4 0.71 1.5E-05 54.7 10.3 119 161-281 417-570 (614)
415 PRK15429 formate hydrogenlyase 92.4 0.44 9.6E-06 61.8 9.9 61 138-200 375-437 (686)
416 cd01125 repA Hexameric Replica 92.4 0.61 1.3E-05 51.8 9.7 24 162-185 3-26 (239)
417 PF08298 AAA_PrkA: PrkA AAA do 92.4 0.2 4.3E-06 57.0 5.7 79 139-222 61-152 (358)
418 PF13245 AAA_19: Part of AAA d 92.4 0.27 5.9E-06 43.1 5.4 26 159-184 9-34 (76)
419 PRK11823 DNA repair protein Ra 92.4 0.3 6.6E-06 59.2 7.7 85 160-249 80-166 (446)
420 KOG3864 Uncharacterized conser 92.3 0.03 6.5E-07 57.4 -0.8 70 1170-1240 116-187 (221)
421 PRK04040 adenylate kinase; Pro 92.3 0.12 2.6E-06 54.7 3.7 25 161-185 3-27 (188)
422 TIGR02655 circ_KaiC circadian 92.3 0.52 1.1E-05 58.2 9.8 86 159-249 262-363 (484)
423 PRK08149 ATP synthase SpaL; Va 92.3 0.5 1.1E-05 56.1 9.1 88 160-251 151-253 (428)
424 KOG3347 Predicted nucleotide k 92.3 0.11 2.5E-06 50.3 3.0 36 160-202 7-42 (176)
425 COG0003 ArsA Predicted ATPase 92.3 0.25 5.3E-06 56.5 6.3 49 160-210 2-50 (322)
426 TIGR03881 KaiC_arch_4 KaiC dom 92.3 0.95 2.1E-05 49.9 11.0 41 159-201 19-59 (229)
427 cd03246 ABCC_Protease_Secretio 92.2 0.35 7.5E-06 50.7 7.0 26 160-185 28-53 (173)
428 PF07726 AAA_3: ATPase family 92.2 0.1 2.2E-06 50.1 2.6 27 163-191 2-28 (131)
429 TIGR01817 nifA Nif-specific re 92.2 0.32 7E-06 61.1 8.0 49 137-185 194-244 (534)
430 COG0488 Uup ATPase components 92.2 3.3 7.2E-05 51.1 16.2 129 161-293 349-510 (530)
431 PRK00279 adk adenylate kinase; 92.1 0.5 1.1E-05 51.5 8.4 24 162-185 2-25 (215)
432 COG1224 TIP49 DNA helicase TIP 92.1 0.48 1.1E-05 53.0 8.0 54 138-191 38-96 (450)
433 cd03230 ABC_DR_subfamily_A Thi 92.1 0.41 8.9E-06 50.1 7.4 25 160-184 26-50 (173)
434 PRK09435 membrane ATPase/prote 92.1 0.57 1.2E-05 54.0 9.0 39 149-187 43-83 (332)
435 cd01122 GP4d_helicase GP4d_hel 92.0 0.81 1.7E-05 52.0 10.2 52 160-214 30-81 (271)
436 PRK10751 molybdopterin-guanine 91.9 0.18 3.8E-06 52.1 4.2 28 159-186 5-32 (173)
437 COG3854 SpoIIIAA ncharacterize 91.9 0.5 1.1E-05 49.5 7.3 121 151-281 128-257 (308)
438 PRK00131 aroK shikimate kinase 91.9 0.14 3E-06 53.9 3.5 26 160-185 4-29 (175)
439 PRK14532 adenylate kinase; Pro 91.8 0.49 1.1E-05 50.4 7.7 22 163-184 3-24 (188)
440 TIGR02030 BchI-ChlI magnesium 91.8 0.23 4.9E-06 57.5 5.5 47 138-184 3-49 (337)
441 PRK11608 pspF phage shock prot 91.8 0.27 5.8E-06 57.3 6.1 45 140-184 7-53 (326)
442 cd00267 ABC_ATPase ABC (ATP-bi 91.8 0.31 6.8E-06 50.1 6.0 112 161-281 26-144 (157)
443 PF13086 AAA_11: AAA domain; P 91.7 0.31 6.7E-06 53.9 6.4 23 162-184 19-41 (236)
444 cd02024 NRK1 Nicotinamide ribo 91.7 0.12 2.7E-06 54.2 2.9 23 162-184 1-23 (187)
445 cd02023 UMPK Uridine monophosp 91.6 0.12 2.6E-06 55.6 2.8 23 162-184 1-23 (198)
446 PHA02774 E1; Provisional 91.6 0.32 6.8E-06 59.0 6.4 48 147-198 420-468 (613)
447 TIGR01040 V-ATPase_V1_B V-type 91.6 0.9 1.9E-05 54.0 10.0 91 161-251 142-259 (466)
448 TIGR01039 atpD ATP synthase, F 91.6 1 2.2E-05 53.7 10.6 90 161-251 144-249 (461)
449 TIGR02655 circ_KaiC circadian 91.6 0.78 1.7E-05 56.7 10.1 48 159-210 20-68 (484)
450 COG1703 ArgK Putative periplas 91.6 0.42 9E-06 52.6 6.7 55 149-203 38-94 (323)
451 PRK00889 adenylylsulfate kinas 91.6 0.2 4.2E-06 52.7 4.3 28 159-186 3-30 (175)
452 cd02020 CMPK Cytidine monophos 91.5 0.14 3E-06 52.0 3.0 24 162-185 1-24 (147)
453 TIGR00382 clpX endopeptidase C 91.5 0.55 1.2E-05 55.8 8.2 46 140-185 78-141 (413)
454 cd02021 GntK Gluconate kinase 91.5 0.13 2.9E-06 52.4 2.8 23 162-184 1-23 (150)
455 cd00227 CPT Chloramphenicol (C 91.4 0.16 3.4E-06 53.4 3.4 25 161-185 3-27 (175)
456 PRK06217 hypothetical protein; 91.4 0.14 3.1E-06 54.2 3.0 34 162-196 3-38 (183)
457 TIGR00150 HI0065_YjeE ATPase, 91.4 0.28 6.1E-06 48.1 4.8 27 160-186 22-48 (133)
458 TIGR02322 phosphon_PhnN phosph 91.4 0.16 3.4E-06 53.6 3.4 25 161-185 2-26 (179)
459 PRK13407 bchI magnesium chelat 91.4 0.24 5.2E-06 57.2 5.0 48 137-184 6-53 (334)
460 TIGR00416 sms DNA repair prote 91.3 0.56 1.2E-05 57.0 8.3 86 159-249 93-180 (454)
461 PTZ00185 ATPase alpha subunit; 91.3 1.2 2.5E-05 53.4 10.5 90 161-251 190-301 (574)
462 cd01136 ATPase_flagellum-secre 91.3 0.81 1.8E-05 52.5 9.1 88 160-251 69-171 (326)
463 PRK14529 adenylate kinase; Pro 91.3 0.63 1.4E-05 50.4 7.8 84 163-251 3-88 (223)
464 cd01134 V_A-ATPase_A V/A-type 91.3 1.2 2.5E-05 51.0 10.1 48 161-212 158-206 (369)
465 PRK06936 type III secretion sy 91.2 0.76 1.6E-05 54.7 9.0 88 160-251 162-264 (439)
466 CHL00081 chlI Mg-protoporyphyr 91.2 0.23 4.9E-06 57.5 4.7 49 137-185 15-63 (350)
467 PF05970 PIF1: PIF1-like helic 91.2 0.43 9.4E-06 56.6 7.2 41 146-186 8-48 (364)
468 TIGR03498 FliI_clade3 flagella 91.2 0.66 1.4E-05 55.2 8.5 89 160-251 140-242 (418)
469 PRK15453 phosphoribulokinase; 91.2 1.1 2.4E-05 49.7 9.5 27 159-185 4-30 (290)
470 PRK13947 shikimate kinase; Pro 91.2 0.17 3.6E-06 53.0 3.3 24 162-185 3-26 (171)
471 COG0467 RAD55 RecA-superfamily 91.1 0.28 6E-06 55.4 5.2 55 158-217 21-75 (260)
472 cd03369 ABCC_NFT1 Domain 2 of 91.1 1.3 2.8E-05 48.0 10.2 25 160-184 34-58 (207)
473 cd02028 UMPK_like Uridine mono 91.1 0.17 3.8E-06 53.1 3.3 24 162-185 1-24 (179)
474 KOG0740 AAA+-type ATPase [Post 91.1 1.9 4.2E-05 50.7 11.9 74 158-251 184-257 (428)
475 TIGR00708 cobA cob(I)alamin ad 91.1 1.2 2.5E-05 45.9 9.0 118 160-278 5-141 (173)
476 KOG1942 DNA helicase, TBP-inte 91.0 0.45 9.7E-06 51.4 6.0 56 137-192 36-96 (456)
477 PRK06731 flhF flagellar biosyn 91.0 1.1 2.3E-05 50.3 9.4 91 159-251 74-166 (270)
478 KOG3864 Uncharacterized conser 90.9 0.046 9.9E-07 56.1 -1.2 70 780-851 122-191 (221)
479 COG0529 CysC Adenylylsulfate k 90.9 0.41 9E-06 48.3 5.4 32 156-187 19-50 (197)
480 cd03285 ABC_MSH2_euk MutS2 hom 90.9 0.083 1.8E-06 57.7 0.6 173 159-343 29-218 (222)
481 cd03243 ABC_MutS_homologs The 90.9 0.12 2.7E-06 55.6 2.0 23 161-183 30-52 (202)
482 PRK07276 DNA polymerase III su 90.9 5.6 0.00012 45.0 15.0 151 145-305 8-172 (290)
483 PRK14530 adenylate kinase; Pro 90.8 0.19 4.1E-06 54.8 3.4 25 161-185 4-28 (215)
484 CHL00060 atpB ATP synthase CF1 90.8 0.89 1.9E-05 54.6 9.1 90 161-251 162-274 (494)
485 KOG0726 26S proteasome regulat 90.8 1.1 2.4E-05 48.5 8.8 52 134-185 180-244 (440)
486 PRK14531 adenylate kinase; Pro 90.8 0.75 1.6E-05 48.7 7.8 25 161-185 3-27 (183)
487 TIGR03496 FliI_clade1 flagella 90.8 0.61 1.3E-05 55.5 7.7 88 160-251 137-239 (411)
488 cd00464 SK Shikimate kinase (S 90.8 0.2 4.3E-06 51.4 3.3 23 163-185 2-24 (154)
489 TIGR01041 ATP_syn_B_arch ATP s 90.7 1.2 2.5E-05 53.7 10.1 91 161-251 142-250 (458)
490 cd03282 ABC_MSH4_euk MutS4 hom 90.7 0.3 6.4E-06 52.5 4.7 117 159-282 28-156 (204)
491 TIGR00073 hypB hydrogenase acc 90.7 0.37 8.1E-06 52.1 5.6 32 154-185 16-47 (207)
492 cd03287 ABC_MSH3_euk MutS3 hom 90.7 0.18 4E-06 54.7 3.1 109 159-282 30-159 (222)
493 COG4240 Predicted kinase [Gene 90.7 1.6 3.5E-05 45.8 9.5 81 158-239 48-133 (300)
494 PF06068 TIP49: TIP49 C-termin 90.7 0.39 8.5E-06 54.7 5.6 53 138-190 23-80 (398)
495 PF03029 ATP_bind_1: Conserved 90.6 0.21 4.5E-06 55.0 3.5 33 165-199 1-33 (238)
496 TIGR03263 guanyl_kin guanylate 90.6 0.17 3.7E-06 53.4 2.8 24 161-184 2-25 (180)
497 PRK07594 type III secretion sy 90.6 0.7 1.5E-05 55.0 8.0 89 159-251 154-257 (433)
498 cd02029 PRK_like Phosphoribulo 90.6 1 2.2E-05 49.6 8.5 25 162-186 1-25 (277)
499 KOG0651 26S proteasome regulat 90.6 0.57 1.2E-05 51.4 6.5 27 160-186 166-192 (388)
500 cd03227 ABC_Class2 ABC-type Cl 90.6 1.2 2.7E-05 45.9 9.0 116 161-294 22-155 (162)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-80 Score=778.83 Aligned_cols=626 Identities=28% Similarity=0.427 Sum_probs=493.3
Q ss_pred cccchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHhhhhcchhhc---------
Q 000518 6 QFGYFCCYKSNFDHLTKEVEKLRERRESVQHRVDFAKENGEEIEQSVENWLISVDKIVEEAGKFVEDDEEA--------- 76 (1448)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~~~~~~~~~wl~~v~~~~~d~~~~l~~~~~~--------- 76 (1448)
...++......+.+.++.+..|++.+..++.++++|+++ +.....+..|...+++++|++++.++.+.-.
T Consensus 12 ~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~-~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~ 90 (889)
T KOG4658|consen 12 LDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAK-RDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDL 90 (889)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344667778888899999999999999999999999988 4557889999999999999999987643210
Q ss_pred --------CCCcccccC-CChhhhhHHHHHHHHHHHHHHHHhhcCCCcceeccccccccccccccccCCCccccccHHHH
Q 000518 77 --------NNPCFKVLC-PNLKNRHHLSKKAAKEVKAIVELQDEGNFDRVSVRGISRDRLVAYTESYNEGHEFIESRESI 147 (1448)
Q Consensus 77 --------~~~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gR~~~ 147 (1448)
+.-|+.+.+ ..+..-+.+++++-++.+.++.+..++.+..++.... + .......+...... +|.+..
T Consensus 91 l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~--~-~~~~e~~~~~~~~~-VG~e~~ 166 (889)
T KOG4658|consen 91 LSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLD--P-REKVETRPIQSESD-VGLETM 166 (889)
T ss_pred hhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccccc--c-hhhcccCCCCcccc-ccHHHH
Confidence 011222222 2333445566777777777777766655544332111 1 11111222222333 999999
Q ss_pred HHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHh-ccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCC---
Q 000518 148 LNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAK-EGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEES--- 223 (1448)
Q Consensus 148 ~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~-~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~--- 223 (1448)
++++...|.+++..+++|+||||+||||||++++|+.. ++++||.++||+||+.++..+++++|+..++.......
T Consensus 167 ~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~ 246 (889)
T KOG4658|consen 167 LEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKE 246 (889)
T ss_pred HHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhh
Confidence 99999999988779999999999999999999999998 99999999999999999999999999999887433322
Q ss_pred hHHHHHHHHHHHHccCcEEEEEcCCCCccchhhccCCCCCCCCCcEEEEEeccchhhhhcCcccceEEeecCChHHHHHH
Q 000518 224 DSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSEMHCQNNYCVSVLNKEEAWSL 303 (1448)
Q Consensus 224 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~L 303 (1448)
....+..+.+.+. +|||+||+||||+..+|+.++.|+|...+||||++|||++.|+..+|++...++++.|+++|||.|
T Consensus 247 ~~~~~~~i~~~L~-~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~L 325 (889)
T KOG4658|consen 247 EDELASKLLNLLE-GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDL 325 (889)
T ss_pred HHHHHHHHHHHhc-cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHH
Confidence 2344555666665 899999999999999999999999999899999999999999996688889999999999999999
Q ss_pred HHHHhCCC--CCCccHHHHHHHHHHHhCCChHHHHHHHHHhcCCChHH-HHHHHHHHhhh-ccCCcchH-HHHHhHHHHH
Q 000518 304 FSKVVGNC--VEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFV-WKKALQELRFS-ARNFTGLE-ALLGSTIELI 378 (1448)
Q Consensus 304 f~~~~~~~--~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~-w~~~l~~l~~~-~~~~~~~~-~~~~~~l~~s 378 (1448)
|++.|+.. ...+.++++|++|+++|+|+|||++++|+.|+.|...+ |+++.+.+.+. ..+.+++. .++ +++++|
T Consensus 326 F~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~-~iLklS 404 (889)
T KOG4658|consen 326 FQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESIL-PILKLS 404 (889)
T ss_pred HHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhH-Hhhhcc
Confidence 99999754 23355899999999999999999999999999997764 99999999865 33344434 488 999999
Q ss_pred HcccCCCchHHHHHHhccCCCCCCccHHHHHHHHhccccccchhhHHHHHHHHHHHHHhHhcccccccCC---CCCceeh
Q 000518 379 YNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVYALVRGLKDTCLLHDDD---TADWFSM 455 (1448)
Q Consensus 379 y~~L~~~~lk~cfl~~s~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~---~~~~~~m 455 (1448)
|+.||++ +|.||+|||+||++|.++++.|+.+|+|+||+.+....+.+.+.+++|+++|++++|++... ....|+|
T Consensus 405 yd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~km 483 (889)
T KOG4658|consen 405 YDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKM 483 (889)
T ss_pred HhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEe
Confidence 9999965 99999999999996556669999999999999774445556666778899999999998765 3468999
Q ss_pred hhHHHHHHHHhhc-----c-ceEEecc-ccccCCCccccccceEEEcccCCCCCCCCCCCCCCccEEEcCCCCC-CCCCC
Q 000518 456 LGFVRNVAISIAS-----I-NLMVRND-ALIEWPNKDMLKNCIAIFLHDINTGELPEGLEYPHLTSLCMNPKDP-FLHIP 527 (1448)
Q Consensus 456 Hdlv~~~a~~~~~-----~-~~~~~~~-~~~~~~~~~~~~~~r~lsl~~~~~~~lp~~~~~~~L~~L~l~~n~~-~~~~~ 527 (1448)
||+|||+|.++|+ + +.++.++ +..+.|....+..+|+++++++.+..++....+++|++|.+..|.. ...++
T Consensus 484 HDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is 563 (889)
T KOG4658|consen 484 HDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEIS 563 (889)
T ss_pred eHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcC
Confidence 9999999999999 3 4333332 4445666667788999999999999999999999999999999873 56788
Q ss_pred chhhcCCCCceEEEecCC-cCcccCccCCCCCCCCEEeccCCCCCCCcccCCCCCCCEEEcccCCCcccchhhhccCccC
Q 000518 528 DNFFAGMPKLRVLVLTRM-KLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLK 606 (1448)
Q Consensus 528 ~~~f~~l~~Lr~L~L~~~-~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~ 606 (1448)
..+|..++.||+|||++| .+.++|++|+.|.+||| |+++++.+..||.++++|+.|+
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry----------------------L~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY----------------------LDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc----------------------ccccCCCccccchHHHHHHhhh
Confidence 888999999999999986 34578877665555554 5555667778888888888888
Q ss_pred EEeccCCCCCCccCccccCCCCCCCEEEeeCCCccccccccccccCCcChhhcCCCCCCCEEEee
Q 000518 607 LLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIH 671 (1448)
Q Consensus 607 ~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 671 (1448)
+|++..+..+..+|.. ...|++||+|.+...... .....+.++.+|.+|+.+.+.
T Consensus 622 ~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l~~s~~~---------~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGI-LLELQSLRVLRLPRSALS---------NDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred eeccccccccccccch-hhhcccccEEEeeccccc---------cchhhHHhhhcccchhhheee
Confidence 8888887766666443 666888888887654321 123445666777777766664
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.6e-59 Score=628.19 Aligned_cols=688 Identities=22% Similarity=0.271 Sum_probs=455.2
Q ss_pred CccccccHHHHHHHHHHHHc--CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEe---cCCc---------
Q 000518 137 GHEFIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV---SQTP--------- 202 (1448)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v---~~~~--------- 202 (1448)
+..+++||+..++++..+|. .+++++|+||||||+||||||+++|++.. .+|+..+|+.. +...
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhccccccc
Confidence 45578999999999998876 56789999999999999999999999876 67998888742 1110
Q ss_pred --C-HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCccchhhccCCCCCCCCCcEEEEEeccchh
Q 000518 203 --D-LKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDV 279 (1448)
Q Consensus 203 --~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v 279 (1448)
+ ...++++++..+-...... ......+.+++. ++|+||||||||+..+|+.+.......++||+||||||++.+
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~--~~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~v 336 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIK--IYHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHF 336 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCcc--cCCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHH
Confidence 1 1234445544442221110 001233455554 899999999999999999988766666789999999999999
Q ss_pred hhhcCcccceEEeecCChHHHHHHHHHHhCCC-CCCccHHHHHHHHHHHhCCChHHHHHHHHHhcCCChHHHHHHHHHHh
Q 000518 280 LVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNC-VEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELR 358 (1448)
Q Consensus 280 ~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~-~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~l~~l~ 358 (1448)
+.. +++.+.|+++.++++|||+||+++|+.. .++.++.+++++|+++|+|+|||++++|++|+++...+|+.++++++
T Consensus 337 l~~-~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~ 415 (1153)
T PLN03210 337 LRA-HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLR 415 (1153)
T ss_pred HHh-cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 873 6777899999999999999999999643 34556889999999999999999999999999998888999999988
Q ss_pred hhccCCcchHHHHHhHHHHHHcccCCCchHHHHHHhccCCCCCCccHHHHHHHHhccccccchhhHHHHHHHHHHHHHhH
Q 000518 359 FSARNFTGLEALLGSTIELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVYALVRGL 438 (1448)
Q Consensus 359 ~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~~L 438 (1448)
... ..++. .+|++||++|++++.|.||+++|+|+. +..++. +..|++.+.+.. + ..++.|
T Consensus 416 ~~~-----~~~I~-~~L~~SYd~L~~~~~k~~Fl~ia~ff~--~~~~~~-v~~~l~~~~~~~--------~---~~l~~L 475 (1153)
T PLN03210 416 NGL-----DGKIE-KTLRVSYDGLNNKKDKAIFRHIACLFN--GEKVND-IKLLLANSDLDV--------N---IGLKNL 475 (1153)
T ss_pred hCc-----cHHHH-HHHHHhhhccCccchhhhhheehhhcC--CCCHHH-HHHHHHhcCCCc--------h---hChHHH
Confidence 321 13477 999999999987536999999999998 455543 555666554321 1 128899
Q ss_pred hcccccccCCCCCceehhhHHHHHHHHhhccc-------eEEecc-cccc-CCCccccccceEEEcccCCCCCCC--CC-
Q 000518 439 KDTCLLHDDDTADWFSMLGFVRNVAISIASIN-------LMVRND-ALIE-WPNKDMLKNCIAIFLHDINTGELP--EG- 506 (1448)
Q Consensus 439 ~~~~ll~~~~~~~~~~mHdlv~~~a~~~~~~~-------~~~~~~-~~~~-~~~~~~~~~~r~lsl~~~~~~~lp--~~- 506 (1448)
++++|++.. .+.|.|||++|+||+.++++. .++.+. .... .......++++.+++.-..+.++. ..
T Consensus 476 ~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~a 553 (1153)
T PLN03210 476 VDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENA 553 (1153)
T ss_pred HhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHH
Confidence 999999865 357999999999999998663 122211 0000 001122345666666544433221 11
Q ss_pred C-CCCCccEEEcCCCC------CCCCCCchhhcCCCCceEEEecCCcCcccCccCCCCCCCCEEeccCCCCCCC-cccCC
Q 000518 507 L-EYPHLTSLCMNPKD------PFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI-AIIGN 578 (1448)
Q Consensus 507 ~-~~~~L~~L~l~~n~------~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~ 578 (1448)
+ .+++|+.|.+..+. ....+|..+..-...||+|++.++.+..+|..+ ...+|+.|++.+|.+..+ ..+..
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccccc
Confidence 1 56667766665432 112344443222245677777776666666665 456677777776666555 55666
Q ss_pred CCCCCEEEcccC-CCcccchhhhccCccCEEeccCCCCCCccCccccCCCCCCCEEEeeCCCccccccccccccCCcChh
Q 000518 579 LKNLEILSLCCS-DIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQ 657 (1448)
Q Consensus 579 L~~L~~L~Ls~~-~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 657 (1448)
+++|++|+|+++ .+..+| .++.+++|++|++++|..+..+|.. ++++++|+.|++++|.....++ .
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp-----------~ 699 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILP-----------T 699 (1153)
T ss_pred CCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccC-----------C
Confidence 667777777654 355555 3666667777777766666666665 6666677777666654321111 1
Q ss_pred hcCCCCCCCEEEeecCCCc-CCCcccccccccceEEEEccccCCCCCCcccceeeccCCCccchHHHHhhhcccceeccc
Q 000518 658 ELSILSHLTTLEIHIRDAV-ILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNIYLDEIIMNLKEIEELYLD 736 (1448)
Q Consensus 658 ~l~~L~~L~~L~l~~~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~L~~L~L~ 736 (1448)
.+ ++++|+.|+++++... .+| ....+|+.|++.
T Consensus 700 ~i-~l~sL~~L~Lsgc~~L~~~p---------------------------------------------~~~~nL~~L~L~ 733 (1153)
T PLN03210 700 GI-NLKSLYRLNLSGCSRLKSFP---------------------------------------------DISTNISWLDLD 733 (1153)
T ss_pred cC-CCCCCCEEeCCCCCCccccc---------------------------------------------cccCCcCeeecC
Confidence 11 4555666655544211 000 011234444444
Q ss_pred cCCCchhhhcccCcCCcccccccccccccceeeecccccccccCcccccCeEeccccccccchhcccCCcccccceeEEE
Q 000518 737 EVPGIENVLYELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNLIHLEKICDGLLTAEFFSKLRIIK 816 (1448)
Q Consensus 737 ~~~~~~~~l~~l~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~ 816 (1448)
++.. ...... ..+++|++|.+.++...... . .+... .......+++|+.|+
T Consensus 734 ~n~i-~~lP~~---~~l~~L~~L~l~~~~~~~l~-~----------------------~~~~l--~~~~~~~~~sL~~L~ 784 (1153)
T PLN03210 734 ETAI-EEFPSN---LRLENLDELILCEMKSEKLW-E----------------------RVQPL--TPLMTMLSPSLTRLF 784 (1153)
T ss_pred CCcc-cccccc---ccccccccccccccchhhcc-c----------------------ccccc--chhhhhccccchhee
Confidence 4321 111111 12445555544433211000 0 00000 001122357889999
Q ss_pred EeeCCCCCcCCCchhhcCCCCccEEeeccCcchhhhhccCCCCCcCCCCccccccccccEEEccCCCCccccccccCCCC
Q 000518 817 VRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILKFLPQLTSFYAQLKSSD 896 (1448)
Q Consensus 817 L~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~L~~c~~L~~~~~~~~~~~ 896 (1448)
+++|+.+..+|. .++++++|+.|++++|..++.++. ...+++|+.|++++|.++..++.
T Consensus 785 Ls~n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~-------------~~~L~sL~~L~Ls~c~~L~~~p~------ 843 (1153)
T PLN03210 785 LSDIPSLVELPS--SIQNLHKLEHLEIENCINLETLPT-------------GINLESLESLDLSGCSRLRTFPD------ 843 (1153)
T ss_pred CCCCCCccccCh--hhhCCCCCCEEECCCCCCcCeeCC-------------CCCccccCEEECCCCCccccccc------
Confidence 999888888764 467889999999999988887653 12478899999999988876532
Q ss_pred CCCCCCCCcccccccccccceeccccccccccCCCCCCCCcccccccEEEEcccCCccccccchhhhhccccceEEEecc
Q 000518 897 ELDTPKPLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICHC 976 (1448)
Q Consensus 897 ~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~I~~C 976 (1448)
..++|+.|++.++.+.++... ...+++|+.|++.+|++|+.++. ....+++|+.|++++|
T Consensus 844 -------------~~~nL~~L~Ls~n~i~~iP~s-----i~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 844 -------------ISTNISDLNLSRTGIEEVPWW-----IEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDC 903 (1153)
T ss_pred -------------cccccCEeECCCCCCccChHH-----HhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCC
Confidence 146788999988876544221 23588999999999999998754 3567899999999999
Q ss_pred ccccee
Q 000518 977 TVLEEI 982 (1448)
Q Consensus 977 ~~L~~l 982 (1448)
++|+.+
T Consensus 904 ~~L~~~ 909 (1153)
T PLN03210 904 GALTEA 909 (1153)
T ss_pred cccccc
Confidence 988765
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.1e-39 Score=372.34 Aligned_cols=273 Identities=34% Similarity=0.493 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHcC--CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCC-
Q 000518 144 RESILNDILDALRG--PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFC- 220 (1448)
Q Consensus 144 R~~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~- 220 (1448)
|+.++++|.++|.+ ++.++|+|+||||+||||||++++++.+.+++|+.++|+.++...+..+++++|+..++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999997 789999999999999999999999997788999999999999999999999999999987733
Q ss_pred ---CCChHHHHHHHHHHHHccCcEEEEEcCCCCccchhhccCCCCCCCCCcEEEEEeccchhhhhcCcc-cceEEeecCC
Q 000518 221 ---EESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSEMHC-QNNYCVSVLN 296 (1448)
Q Consensus 221 ---~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~~~~-~~~~~l~~L~ 296 (1448)
..........+.+.+. ++++||||||||+...|+.+...++....|++||||||+..++.. +.. ...+++++|+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~-~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGS-LGGTDKVIELEPLS 158 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTT-HHSCEEEEECSS--
T ss_pred cccccccccccccchhhhc-cccceeeeeeecccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence 2344555666666665 789999999999999999998888777789999999999998874 333 6789999999
Q ss_pred hHHHHHHHHHHhCCCC--CCccHHHHHHHHHHHhCCChHHHHHHHHHhcCCC-hHHHHHHHHHHhhhccCCc-chHHHHH
Q 000518 297 KEEAWSLFSKVVGNCV--EDPDLQTVAIQVANECGGLPIAILTVARTLRNKP-LFVWKKALQELRFSARNFT-GLEALLG 372 (1448)
Q Consensus 297 ~~e~~~Lf~~~~~~~~--~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~-~~~w~~~l~~l~~~~~~~~-~~~~~~~ 372 (1448)
++||++||++.++... .....++.+++|+++|+|+||||+++|++|+.+. ..+|+.+++++........ ....++
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~- 237 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVF- 237 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHH-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 9999999999997433 3445567899999999999999999999996553 3349999998885543332 245577
Q ss_pred hHHHHHHcccCCCchHHHHHHhccCCCCCCccHHHHHHHHhccccccc
Q 000518 373 STIELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFED 420 (1448)
Q Consensus 373 ~~l~~sy~~L~~~~lk~cfl~~s~fp~~~~~~i~~li~~w~~~g~~~~ 420 (1448)
.++.+||+.||++ +|+||+|||+||+++.++.+.++++|+++|++..
T Consensus 238 ~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 238 SALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 9999999999997 8999999999999767777999999999999865
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=3.4e-30 Score=348.13 Aligned_cols=529 Identities=20% Similarity=0.198 Sum_probs=304.2
Q ss_pred ccceEEEcccCCCCC-CCCCC-CCCCccEEEcCCCCCCCCCCchhhcCCCCceEEEecCCcCc-ccCccCCCCCCCCEEe
Q 000518 488 KNCIAIFLHDINTGE-LPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLL-TLPSSFCHLPNLESLC 564 (1448)
Q Consensus 488 ~~~r~lsl~~~~~~~-lp~~~-~~~~L~~L~l~~n~~~~~~~~~~f~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~ 564 (1448)
.+++.+++.++.+.. ++..+ .+++|++|++++|.+.+.+|..+|.++++|++|+|++|.+. .+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 357788888777543 34333 78888888888888877888888778888888888888876 4554 5678888888
Q ss_pred ccCCCCCC-C-cccCCCCCCCEEEcccCCCc-ccchhhhccCccCEEeccCCCCCCccCccccCCCCCCCEEEeeCCCcc
Q 000518 565 LDQCILGD-I-AIIGNLKNLEILSLCCSDIE-QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVE 641 (1448)
Q Consensus 565 L~~~~i~~-l-~~i~~L~~L~~L~Ls~~~l~-~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 641 (1448)
|++|.+.. + ..++++.+|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccC
Confidence 88887753 3 56888888888888888765 67888888888888888888755667776 788888888888888765
Q ss_pred ccccccccccCCcChhhcCCCCCCCEEEeecCCCcCCCcccccccccceEEEEccccCCCCCCcccceeeccCCCccchH
Q 000518 642 WEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNIYLD 721 (1448)
Q Consensus 642 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 721 (1448)
+ ..+..++++++|++|++++|......+
T Consensus 226 ~-----------~~p~~l~~l~~L~~L~L~~n~l~~~~p----------------------------------------- 253 (968)
T PLN00113 226 G-----------EIPYEIGGLTSLNHLDLVYNNLTGPIP----------------------------------------- 253 (968)
T ss_pred C-----------cCChhHhcCCCCCEEECcCceeccccC-----------------------------------------
Confidence 2 334567788888888887765431100
Q ss_pred HHHhhhcccceeccccCCCchhhhcccCcCCcccccccccccccceeeecccccccccCcccccCeEeccccccccchhc
Q 000518 722 EIIMNLKEIEELYLDEVPGIENVLYELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNLIHLEKICD 801 (1448)
Q Consensus 722 ~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~ 801 (1448)
..+..+++|+.|++.++.........+ ..++ +|+.|++.++.-...+
T Consensus 254 ~~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~-----------------------------~L~~L~Ls~n~l~~~~-- 300 (968)
T PLN00113 254 SSLGNLKNLQYLFLYQNKLSGPIPPSI--FSLQ-----------------------------KLISLDLSDNSLSGEI-- 300 (968)
T ss_pred hhHhCCCCCCEEECcCCeeeccCchhH--hhcc-----------------------------CcCEEECcCCeeccCC--
Confidence 011223334444444332211111111 1233 3333333332211110
Q ss_pred ccCCcccccceeEEEEeeCCCCCcCCCchhhcCCCCccEEeeccCcchhhhhccCCCCCcCCCCccccccccccEEEccC
Q 000518 802 GLLTAEFFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILKF 881 (1448)
Q Consensus 802 ~~~~~~~~~~L~~L~L~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~L~~ 881 (1448)
+.....+++|+.|++.+|.-...++ ..+..+++|+.|++++|.-...++. ....
T Consensus 301 -p~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~p~------------~l~~----------- 354 (968)
T PLN00113 301 -PELVIQLQNLEILHLFSNNFTGKIP--VALTSLPRLQVLQLWSNKFSGEIPK------------NLGK----------- 354 (968)
T ss_pred -ChhHcCCCCCcEEECCCCccCCcCC--hhHhcCCCCCEEECcCCCCcCcCCh------------HHhC-----------
Confidence 1112345667777776654332222 2345566666666666543222111 1112
Q ss_pred CCCccccccccCCCCCCCCCCCCcccccccccccceeccccccccccCCCCCCCCcccccccEEEEcccCCccccccchh
Q 000518 882 LPQLTSFYAQLKSSDELDTPKPLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSI 961 (1448)
Q Consensus 882 c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~ 961 (1448)
+++|+.|+++++.+....... ...+++|+.|++.+|. +....| ..
T Consensus 355 -----------------------------~~~L~~L~Ls~n~l~~~~p~~----~~~~~~L~~L~l~~n~-l~~~~p-~~ 399 (968)
T PLN00113 355 -----------------------------HNNLTVLDLSTNNLTGEIPEG----LCSSGNLFKLILFSNS-LEGEIP-KS 399 (968)
T ss_pred -----------------------------CCCCcEEECCCCeeEeeCChh----HhCcCCCCEEECcCCE-ecccCC-HH
Confidence 344444444444332211110 1123455556655543 222222 23
Q ss_pred hhhccccceEEEecccccceeecccccccccceeecCccceecccCCCccceecCCcccccCCCcceEEeccCCceeeec
Q 000518 962 VRNFVQLQHLEICHCTVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKVKIFT 1041 (1448)
Q Consensus 962 l~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~C~~L~~l~ 1041 (1448)
+..+++|+.|++.+|.--..++. ....+++|+.|+++++.-....+... ..+++|+.|++.+|.-...++
T Consensus 400 ~~~~~~L~~L~L~~n~l~~~~p~--------~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 400 LGACRSLRRVRLQDNSFSGELPS--------EFTKLPLVYFLDISNNNLQGRINSRK--WDMPSLQMLSLARNKFFGGLP 469 (968)
T ss_pred HhCCCCCCEEECcCCEeeeECCh--------hHhcCCCCCEEECcCCcccCccChhh--ccCCCCcEEECcCceeeeecC
Confidence 45566666666666542211111 11125566666666554322222211 134677777777765443321
Q ss_pred cccccCCCcchhcccccccccchhhhhhhcccceeeeecCcccccccccCCCccccccccEEEEecCCCCcccHHHHhhc
Q 000518 1042 SEFLSFPKNSEEIQRNIPTQQALFLVEKVGSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPICFLQYF 1121 (1448)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~l~~l 1121 (1448)
.. -..++|+.|++++|.+....+..+. .+++|+.|++++|.+....+..+.++
T Consensus 470 ~~-------------------------~~~~~L~~L~ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l 522 (968)
T PLN00113 470 DS-------------------------FGSKRLENLDLSRNQFSGAVPRKLG--SLSELMQLKLSENKLSGEIPDELSSC 522 (968)
T ss_pred cc-------------------------cccccceEEECcCCccCCccChhhh--hhhccCEEECcCCcceeeCChHHcCc
Confidence 10 0134677777777766544333332 26778888888888665555567778
Q ss_pred CCccEEEEEecceeEeecchhhhhhccccccccEEEcCCCCCCchhhccCCcchhhhcccceeEEeccCCccccCCCCcc
Q 000518 1122 KNLEKLELRWSSYKQIFSYKEAEKHAGKLTHIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVPSSPS 1201 (1448)
Q Consensus 1122 ~~L~~L~i~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~l~sL~~L~i~~C~~L~~l~~~~~~ 1201 (1448)
++|++|+|+.|.+....+ .....+++|+.|++++|.-...+ |..+..+++|++|++++|+-...+|.. +.
T Consensus 523 ~~L~~L~Ls~N~l~~~~p-----~~~~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~ 592 (968)
T PLN00113 523 KKLVSLDLSHNQLSGQIP-----ASFSEMPVLSQLDLSQNQLSGEI----PKNLGNVESLVQVNISHNHLHGSLPST-GA 592 (968)
T ss_pred cCCCEEECCCCcccccCC-----hhHhCcccCCEEECCCCcccccC----ChhHhcCcccCEEeccCCcceeeCCCc-ch
Confidence 888888888666654432 12446778888888877654444 455666778888888887766666543 34
Q ss_pred cCcccEEEEec
Q 000518 1202 FRNLITLEVWY 1212 (1448)
Q Consensus 1202 l~sL~~L~I~~ 1212 (1448)
+.++....+.+
T Consensus 593 ~~~~~~~~~~~ 603 (968)
T PLN00113 593 FLAINASAVAG 603 (968)
T ss_pred hcccChhhhcC
Confidence 44444333333
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.1e-29 Score=343.05 Aligned_cols=154 Identities=22% Similarity=0.329 Sum_probs=132.3
Q ss_pred CCccEEEcCCCCCCCCCCchhhcCCCCceEEEecCCcCc-ccCccCC-CCCCCCEEeccCCCCCCCcccCCCCCCCEEEc
Q 000518 510 PHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLL-TLPSSFC-HLPNLESLCLDQCILGDIAIIGNLKNLEILSL 587 (1448)
Q Consensus 510 ~~L~~L~l~~n~~~~~~~~~~f~~l~~Lr~L~L~~~~i~-~lp~~i~-~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~L 587 (1448)
.+++.|++++|.+.+.++.. |..+++|++|+|++|.+. .+|..+. .+.+|++|+|++|.+......+.+.+|++|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~-~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~L 147 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSA-IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDL 147 (968)
T ss_pred CcEEEEEecCCCccccCChH-HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEEC
Confidence 47899999999987777664 689999999999999997 7887755 99999999999998865533467999999999
Q ss_pred ccCCCc-ccchhhhccCccCEEeccCCCCCCccCccccCCCCCCCEEEeeCCCccccccccccccCCcChhhcCCCCCCC
Q 000518 588 CCSDIE-QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLT 666 (1448)
Q Consensus 588 s~~~l~-~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 666 (1448)
++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+. ...+..++++++|+
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~-----------~~~p~~l~~l~~L~ 215 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLV-----------GQIPRELGQMKSLK 215 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCc-----------CcCChHHcCcCCcc
Confidence 999987 78999999999999999999866678877 899999999999999876 23457788999999
Q ss_pred EEEeecCCCc
Q 000518 667 TLEIHIRDAV 676 (1448)
Q Consensus 667 ~L~l~~~~~~ 676 (1448)
.|++++|...
T Consensus 216 ~L~L~~n~l~ 225 (968)
T PLN00113 216 WIYLGYNNLS 225 (968)
T ss_pred EEECcCCccC
Confidence 9999877653
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=6.7e-20 Score=246.94 Aligned_cols=317 Identities=21% Similarity=0.286 Sum_probs=223.8
Q ss_pred cccccceeccccccccccCCCCCCCCcccccccEEEEcccCCccccccchhhhhccccceEEEecccccceeeccccccc
Q 000518 911 FPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICHCTVLEEIVSKERGEE 990 (1448)
Q Consensus 911 ~p~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~I~~C~~L~~l~~~~~~~~ 990 (1448)
+.+|+.|++.++.+..+|.... .+++|+.|++++|.+++.++. +..+++|+.|++++|..+..++..
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~-----~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~s----- 676 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVH-----SLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSS----- 676 (1153)
T ss_pred ccCCcEEECcCccccccccccc-----cCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchh-----
Confidence 5789999999988888886532 588999999999988887743 577899999999999998877542
Q ss_pred ccceeecCccceecccCCCccceecCCcccccCCCcceEEeccCCceeeeccccccCCCcchhcccccccccchhhhhhh
Q 000518 991 ATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKVKIFTSEFLSFPKNSEEIQRNIPTQQALFLVEKV 1070 (1448)
Q Consensus 991 ~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1448)
...+++|+.|.+.+|.+++.+|.+. .+++|+.|++++|..++.++. .
T Consensus 677 ---i~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~---------------------------~ 723 (1153)
T PLN03210 677 ---IQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGCSRLKSFPD---------------------------I 723 (1153)
T ss_pred ---hhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCCCCcccccc---------------------------c
Confidence 2247899999999999999988754 468999999999998876632 2
Q ss_pred cccceeeeecCcccccccccCCCccccccccEEEEecCCCCc-------ccHHHHhhcCCccEEEEE-ecceeEeecchh
Q 000518 1071 GSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDN-------FPICFLQYFKNLEKLELR-WSSYKQIFSYKE 1142 (1448)
Q Consensus 1071 ~~~L~~L~l~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~~~-------~~~~~l~~l~~L~~L~i~-c~~l~~~~~~~~ 1142 (1448)
+.+|++|+++++.+..+|... .+++|+.|.+.+|.... .+......+++|+.|+++ |+.+.+++.
T Consensus 724 ~~nL~~L~L~~n~i~~lP~~~----~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~--- 796 (1153)
T PLN03210 724 STNISWLDLDETAIEEFPSNL----RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS--- 796 (1153)
T ss_pred cCCcCeeecCCCccccccccc----cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh---
Confidence 457888999888887766432 36788888887765211 111122334678888887 666666543
Q ss_pred hhhhccccccccEEEcCCCCCCchhhccCCcchhhhcccceeEEeccCCccccCCCCcccCcccEEEEecCCCCccccch
Q 000518 1143 AEKHAGKLTHIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVPSSPSFRNLITLEVWYCKGLKNLVTS 1222 (1448)
Q Consensus 1143 ~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~l~sL~~L~i~~C~~L~~l~~~~~~l~sL~~L~I~~C~~L~~l~~~ 1222 (1448)
..+.+++|+.|+|++|..++.++. .. .+++|++|++++|.++..+|.. +++|+.|++++ ++++.+|.
T Consensus 797 ---si~~L~~L~~L~Ls~C~~L~~LP~----~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~-n~i~~iP~- 863 (1153)
T PLN03210 797 ---SIQNLHKLEHLEIENCINLETLPT----GI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSR-TGIEEVPW- 863 (1153)
T ss_pred ---hhhCCCCCCEEECCCCCCcCeeCC----CC-CccccCEEECCCCCcccccccc---ccccCEeECCC-CCCccChH-
Confidence 345677788888888877777743 22 5777888888888877776543 35777787776 46776643
Q ss_pred hhhhccccccEEEEecccccchhccccCcccccccccccccccccccccccceecCCccc-----------ccCCCcceE
Q 000518 1223 STAKSLVQLMQLRIDGCKMITEIISNEGDVAEDEIVFSKLKWLSLENLESLTSFYSGNYT-----------FKFPCLEDL 1291 (1448)
Q Consensus 1223 ~~~~~l~~L~~L~I~~C~~l~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~L~~l~~~~~~-----------~~~~sL~~L 1291 (1448)
....+++|+.|++.+|++++.++.... .+++|+.|.+.+|++|+.++....+ ..+|+...+
T Consensus 864 -si~~l~~L~~L~L~~C~~L~~l~~~~~-------~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l 935 (1153)
T PLN03210 864 -WIEKFSNLSFLDMNGCNNLQRVSLNIS-------KLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCI 935 (1153)
T ss_pred -HHhcCCCCCEEECCCCCCcCccCcccc-------cccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhcc
Confidence 245677788888888887777664322 3667777788888777765432211 134445556
Q ss_pred EeccCCcccc
Q 000518 1292 FVIECPNMKI 1301 (1448)
Q Consensus 1292 ~I~~Cp~l~~ 1301 (1448)
.+.+|.++..
T Consensus 936 ~f~nC~~L~~ 945 (1153)
T PLN03210 936 NFINCFNLDQ 945 (1153)
T ss_pred ccccccCCCc
Confidence 6777776653
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=6.5e-22 Score=234.55 Aligned_cols=481 Identities=21% Similarity=0.220 Sum_probs=297.4
Q ss_pred EcccCCCCCCCCCC-CCCCccEEEcCCCCCCCCCCchhhcCCCCceEEEecCCcCcccCccCCCCCCCCEEeccCCCCCC
Q 000518 494 FLHDINTGELPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGD 572 (1448)
Q Consensus 494 sl~~~~~~~lp~~~-~~~~L~~L~l~~n~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~ 572 (1448)
.++++....||..+ ....+..|++..|.+ ...|-.+..+.-+|+.|++++|.+..+|..+..+.+|+.|+++.|.|..
T Consensus 4 d~s~~~l~~ip~~i~~~~~~~~ln~~~N~~-l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~ 82 (1081)
T KOG0618|consen 4 DASDEQLELIPEQILNNEALQILNLRRNSL-LSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRS 82 (1081)
T ss_pred ccccccCcccchhhccHHHHHhhhcccccc-ccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhh
Confidence 44555566676655 344477788887765 4445555666667999999999999999999999999999999999977
Q ss_pred C-cccCCCCCCCEEEcccCCCcccchhhhccCccCEEeccCCCCCCccCccccCCCCCCCEEEeeCCCcccccccccccc
Q 000518 573 I-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLER 651 (1448)
Q Consensus 573 l-~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~ 651 (1448)
+ .+++++.+|++|+|.+|.+..+|.++..+++|++|++++|. +..+|.- +..++.+..+.+++|..
T Consensus 83 vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N~~----------- 149 (1081)
T KOG0618|consen 83 VPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNNEK----------- 149 (1081)
T ss_pred CchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcchh-----------
Confidence 6 78999999999999999999999999999999999999987 7888886 78888888888877721
Q ss_pred CCcChhhcCCCCCCCEEEeecCCCc-CCCcccccccccceEEEEccccCCCCCCcccceeeccCCCccchHHHHhhhccc
Q 000518 652 NNASLQELSILSHLTTLEIHIRDAV-ILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNIYLDEIIMNLKEI 730 (1448)
Q Consensus 652 ~~~~~~~l~~L~~L~~L~l~~~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~L 730 (1448)
+..++... .+.+++..+.+. .+..+ ..++
T Consensus 150 ----~~~lg~~~-ik~~~l~~n~l~~~~~~~---------------------------------------------i~~l 179 (1081)
T KOG0618|consen 150 ----IQRLGQTS-IKKLDLRLNVLGGSFLID---------------------------------------------IYNL 179 (1081)
T ss_pred ----hhhhcccc-chhhhhhhhhcccchhcc---------------------------------------------hhhh
Confidence 12233332 444444433221 01000 0111
Q ss_pred c-eeccccCCCchhhhcccCcCCcccccccccccccceeeecccccccccCcccccCeEeccccccccchhcccCCcccc
Q 000518 731 E-ELYLDEVPGIENVLYELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNLIHLEKICDGLLTAEFF 809 (1448)
Q Consensus 731 ~-~L~L~~~~~~~~~l~~l~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~ 809 (1448)
+ .|+|..+... .+....+++|+.|....+...... ..-++|+.|....++-.+. ...+.-
T Consensus 180 ~~~ldLr~N~~~-----~~dls~~~~l~~l~c~rn~ls~l~---------~~g~~l~~L~a~~n~l~~~-----~~~p~p 240 (1081)
T KOG0618|consen 180 THQLDLRYNEME-----VLDLSNLANLEVLHCERNQLSELE---------ISGPSLTALYADHNPLTTL-----DVHPVP 240 (1081)
T ss_pred heeeecccchhh-----hhhhhhccchhhhhhhhcccceEE---------ecCcchheeeeccCcceee-----cccccc
Confidence 1 2333333211 111134455555555444322211 1235566666666554321 122334
Q ss_pred cceeEEEEeeCCCCCcCCCchhhcCCCCccEEeeccCcchhhhhccCCCCCcCCCCccccccccccEEEccCCCCccccc
Q 000518 810 SKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILKFLPQLTSFY 889 (1448)
Q Consensus 810 ~~L~~L~L~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~L~~c~~L~~~~ 889 (1448)
.+|+.++++. .++..+| .++..+++|+.|.+.+..- ..++. .+..
T Consensus 241 ~nl~~~dis~-n~l~~lp--~wi~~~~nle~l~~n~N~l-~~lp~------------ri~~------------------- 285 (1081)
T KOG0618|consen 241 LNLQYLDISH-NNLSNLP--EWIGACANLEALNANHNRL-VALPL------------RISR------------------- 285 (1081)
T ss_pred ccceeeecch-hhhhcch--HHHHhcccceEecccchhH-HhhHH------------HHhh-------------------
Confidence 6788888887 5677776 5677888888888776442 33321 1111
Q ss_pred cccCCCCCCCCCCCCcccccccccccceeccccccccccCCCCCCCCcccccccEEEEcccCCccccccchhhhhcc-cc
Q 000518 890 AQLKSSDELDTPKPLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFV-QL 968 (1448)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~l~~l~-~L 968 (1448)
..+|+.|.+..|.+..+..... .+.+|++|++.. .+|..++. ..+.-+. +|
T Consensus 286 ---------------------~~~L~~l~~~~nel~yip~~le-----~~~sL~tLdL~~-N~L~~lp~-~~l~v~~~~l 337 (1081)
T KOG0618|consen 286 ---------------------ITSLVSLSAAYNELEYIPPFLE-----GLKSLRTLDLQS-NNLPSLPD-NFLAVLNASL 337 (1081)
T ss_pred ---------------------hhhHHHHHhhhhhhhhCCCccc-----ccceeeeeeehh-ccccccch-HHHhhhhHHH
Confidence 2233344444333333222111 244555555544 33444422 2222222 25
Q ss_pred ceEEEecccccceeecccccccccceeecCccceecccCCCccceecCCcccccCCCcceEEeccCCceeeeccccccCC
Q 000518 969 QHLEICHCTVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKVKIFTSEFLSFP 1048 (1448)
Q Consensus 969 ~~L~I~~C~~L~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~C~~L~~l~~~~~~~~ 1048 (1448)
+.|+++ |..+...+. .....++.|+.|++.+.. |++-+..... .+..|+.|++++ ..|..||...
T Consensus 338 ~~ln~s-~n~l~~lp~-------~~e~~~~~Lq~LylanN~-Ltd~c~p~l~-~~~hLKVLhLsy-NrL~~fpas~---- 402 (1081)
T KOG0618|consen 338 NTLNVS-SNKLSTLPS-------YEENNHAALQELYLANNH-LTDSCFPVLV-NFKHLKVLHLSY-NRLNSFPASK---- 402 (1081)
T ss_pred HHHhhh-hcccccccc-------ccchhhHHHHHHHHhcCc-ccccchhhhc-cccceeeeeecc-cccccCCHHH----
Confidence 555544 233333321 111236677777777653 3332222222 446777887766 4455553210
Q ss_pred CcchhcccccccccchhhhhhhcccceeeeecCcccccccccCCCccccccccEEEEecCCCCcccHHHHhhcCCccEEE
Q 000518 1049 KNSEEIQRNIPTQQALFLVEKVGSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPICFLQYFKNLEKLE 1128 (1448)
Q Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~ 1128 (1448)
..-+..|++|.+|+|.++.++..... +..|++|...+|.+..+| .+..++.|+.++
T Consensus 403 -------------------~~kle~LeeL~LSGNkL~~Lp~tva~---~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 403 -------------------LRKLEELEELNLSGNKLTTLPDTVAN---LGRLHTLRAHSNQLLSFP--ELAQLPQLKVLD 458 (1081)
T ss_pred -------------------HhchHHhHHHhcccchhhhhhHHHHh---hhhhHHHhhcCCceeech--hhhhcCcceEEe
Confidence 12256799999999999998865433 788999999999999999 567799999999
Q ss_pred EEecceeEeecchhhhhhcccc-ccccEEEcCCCCCCc
Q 000518 1129 LRWSSYKQIFSYKEAEKHAGKL-THIKSLKLWELSDLM 1165 (1448)
Q Consensus 1129 i~c~~l~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~L~ 1165 (1448)
++||++..+.-.. ..+ +.|++|+++|...+.
T Consensus 459 lS~N~L~~~~l~~------~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPE------ALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred cccchhhhhhhhh------hCCCcccceeeccCCcccc
Confidence 9999998764322 233 899999999987643
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=3.6e-20 Score=208.05 Aligned_cols=153 Identities=20% Similarity=0.310 Sum_probs=92.3
Q ss_pred CCCccEEEcCCCCCCCCCCchhhcCCCCceEEEecCCcCcccCccCCCCCCCCEEeccCCCCCCC--cccCCCCCCCEEE
Q 000518 509 YPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI--AIIGNLKNLEILS 586 (1448)
Q Consensus 509 ~~~L~~L~l~~n~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l--~~i~~L~~L~~L~ 586 (1448)
.+..++|++++|.+ ..+.-.+|.++++|+.+++.+|.++.+|....-..||+.|+|.+|.|..+ +.+..+..||.||
T Consensus 77 p~~t~~LdlsnNkl-~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKL-SHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred ccceeeeecccccc-ccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 34556677776665 33444456677777777777777777776555556677777777766666 4566666666677
Q ss_pred cccCCCcccchh-hhccCccCEEeccCCCCCCccCccccCCCCCCCEEEeeCCCccccccccccccCCcChhhcCCCCCC
Q 000518 587 LCCSDIEQLPRE-IGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHL 665 (1448)
Q Consensus 587 Ls~~~l~~LP~~-i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 665 (1448)
||.|.|.++|.. +..=.++++|+|++|. ++.+-.+.|..+.+|-.|.++.|.++ ......|++|++|
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrit-----------tLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRIT-----------TLPQRSFKRLPKL 223 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCccc-----------ccCHHHhhhcchh
Confidence 766666665532 4444566666666655 55555555556666666666665554 2233455555555
Q ss_pred CEEEeecCC
Q 000518 666 TTLEIHIRD 674 (1448)
Q Consensus 666 ~~L~l~~~~ 674 (1448)
+.|++..|.
T Consensus 224 ~~LdLnrN~ 232 (873)
T KOG4194|consen 224 ESLDLNRNR 232 (873)
T ss_pred hhhhccccc
Confidence 555554443
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=2.6e-20 Score=221.16 Aligned_cols=114 Identities=28% Similarity=0.377 Sum_probs=69.8
Q ss_pred CCCCchhhcCCCCceEEEecCCcCcccCcc-CCCCCCCCEEeccCCCCCCC-cccCCCCCCCEEEcccCCCcccchhhhc
Q 000518 524 LHIPDNFFAGMPKLRVLVLTRMKLLTLPSS-FCHLPNLESLCLDQCILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGE 601 (1448)
Q Consensus 524 ~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~Ls~~~l~~LP~~i~~ 601 (1448)
..+|..+|..-. +..|++..|.+-..|-. +.+..+|+.|++++|.+... ..|..+.+|+.|++++|.|...|.++++
T Consensus 11 ~~ip~~i~~~~~-~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~ 89 (1081)
T KOG0618|consen 11 ELIPEQILNNEA-LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSN 89 (1081)
T ss_pred cccchhhccHHH-HHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhh
Confidence 455555543333 66666666666554421 33344467777777666554 5566666777777776666666666666
Q ss_pred cCccCEEeccCCCCCCccCccccCCCCCCCEEEeeCCCc
Q 000518 602 LTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSV 640 (1448)
Q Consensus 602 L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 640 (1448)
+.+|++|+|.+|. +..+|.+ +..+++|+.|+++.|.+
T Consensus 90 ~~~l~~lnL~~n~-l~~lP~~-~~~lknl~~LdlS~N~f 126 (1081)
T KOG0618|consen 90 MRNLQYLNLKNNR-LQSLPAS-ISELKNLQYLDLSFNHF 126 (1081)
T ss_pred hhcchhheeccch-hhcCchh-HHhhhcccccccchhcc
Confidence 7777777666654 6666666 66666666666666554
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=1.4e-21 Score=210.38 Aligned_cols=124 Identities=19% Similarity=0.196 Sum_probs=82.1
Q ss_pred eeeecCcccccccccCCCccccccccEEEEecCCCCcccHHHHhhcCCccEEEEEecceeEeecchhhhhhccccccccE
Q 000518 1076 ELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPICFLQYFKNLEKLELRWSSYKQIFSYKEAEKHAGKLTHIKS 1155 (1448)
Q Consensus 1076 ~L~l~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~c~~l~~~~~~~~~~~~~~~l~~L~~ 1155 (1448)
.+.++++.+...+... ..+++|..|++++|.+..+|.++ +.+..|+.|+|+.|.+..+|. +...+..|+.
T Consensus 416 ~l~lsnn~isfv~~~l---~~l~kLt~L~L~NN~Ln~LP~e~-~~lv~Lq~LnlS~NrFr~lP~------~~y~lq~lEt 485 (565)
T KOG0472|consen 416 DLVLSNNKISFVPLEL---SQLQKLTFLDLSNNLLNDLPEEM-GSLVRLQTLNLSFNRFRMLPE------CLYELQTLET 485 (565)
T ss_pred HHHhhcCccccchHHH---Hhhhcceeeecccchhhhcchhh-hhhhhhheecccccccccchH------HHhhHHHHHH
Confidence 3445555555444322 23788999999999999988855 447789999999777777654 1112223333
Q ss_pred EEcCCCCCCchhhccCCcchhhhcccceeEEeccCCccccCCCCcccCcccEEEEecCC
Q 000518 1156 LKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVPSSPSFRNLITLEVWYCK 1214 (1448)
Q Consensus 1156 L~l~~c~~L~~l~~~~~~~~~~l~sL~~L~i~~C~~L~~l~~~~~~l~sL~~L~I~~C~ 1214 (1448)
+-.+ -..+.+++ +.++..+.+|..|++.+ ..++.+|+.++++++|++|++++-|
T Consensus 486 llas-~nqi~~vd---~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 486 LLAS-NNQIGSVD---PSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HHhc-cccccccC---hHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 3333 23444443 34567788888888876 4477888888888999999888843
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=1.7e-21 Score=209.70 Aligned_cols=173 Identities=27% Similarity=0.342 Sum_probs=104.7
Q ss_pred eEEEcccCCCCCCCCCC-CCCCccEEEcCCCCCCCCCCchhhcCCCCceEEEecCCcCcccCccCCCCCCCCEEeccCCC
Q 000518 491 IAIFLHDINTGELPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCI 569 (1448)
Q Consensus 491 r~lsl~~~~~~~lp~~~-~~~~L~~L~l~~n~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~ 569 (1448)
..+.+..|.+..+.+.. .+..|.+|+++.|.. ..+|..+ +.+..+..|+.++|.+..+|..++.+..|+.|+.++|.
T Consensus 48 ~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l-~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 48 QKLILSHNDLEVLREDLKNLACLTVLNVHDNKL-SQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhhhccCchhhccHhhhcccceeEEEeccchh-hhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc
Confidence 33445555555444444 556666666666665 3445543 56666666666666666666666666666666666666
Q ss_pred CCCC-cccCCCCCCCEEEcccCCCcccchhhhccCccCEEeccCCCCCCccCccccCCCCCCCEEEeeCCCccccccccc
Q 000518 570 LGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLN 648 (1448)
Q Consensus 570 i~~l-~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 648 (1448)
+..+ ++|+.+..|..|+..+|.+..+|.+++++.+|..|++.+|+ ++.+|++ .-+++.|++|+...|-+.
T Consensus 126 ~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~-~i~m~~L~~ld~~~N~L~------- 196 (565)
T KOG0472|consen 126 LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPEN-HIAMKRLKHLDCNSNLLE------- 196 (565)
T ss_pred eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHH-HHHHHHHHhcccchhhhh-------
Confidence 6555 66666666666666666666666666666666666666655 6666666 333666666665544432
Q ss_pred cccCCcChhhcCCCCCCCEEEeecCCCcCCC
Q 000518 649 LERNNASLQELSILSHLTTLEIHIRDAVILP 679 (1448)
Q Consensus 649 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 679 (1448)
..+.+++.+.+|..|++..|.+..+|
T Consensus 197 -----tlP~~lg~l~~L~~LyL~~Nki~~lP 222 (565)
T KOG0472|consen 197 -----TLPPELGGLESLELLYLRRNKIRFLP 222 (565)
T ss_pred -----cCChhhcchhhhHHHHhhhcccccCC
Confidence 34456666666666666666555444
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=6.7e-19 Score=198.04 Aligned_cols=336 Identities=20% Similarity=0.230 Sum_probs=225.4
Q ss_pred cccceEEEcccCCCCCCCCC--CCCCCccEEEcCCCCCCCCCCchhhcC-CCCceEEEecCCcCcccC-ccCCCCCCCCE
Q 000518 487 LKNCIAIFLHDINTGELPEG--LEYPHLTSLCMNPKDPFLHIPDNFFAG-MPKLRVLVLTRMKLLTLP-SSFCHLPNLES 562 (1448)
Q Consensus 487 ~~~~r~lsl~~~~~~~lp~~--~~~~~L~~L~l~~n~~~~~~~~~~f~~-l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~ 562 (1448)
+...+.+.+++|.+..+... .++++|+.+.+..|.+ ..+|. |+. ..+|..|+|.+|.|+++. ..+..+..||+
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L-t~IP~--f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL-TRIPR--FGHESGHLEKLDLRHNLISSVTSEELSALPALRS 153 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchh-hhccc--ccccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence 44567788888888776544 2788999999988876 67776 344 456899999999888764 55788888999
Q ss_pred EeccCCCCCCC--cccCCCCCCCEEEcccCCCcccch-hhhccCccCEEeccCCCCCCccCccccCCCCCCCEEEeeCCC
Q 000518 563 LCLDQCILGDI--AIIGNLKNLEILSLCCSDIEQLPR-EIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTS 639 (1448)
Q Consensus 563 L~L~~~~i~~l--~~i~~L~~L~~L~Ls~~~l~~LP~-~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~ 639 (1448)
|||+.|.|+.+ +++..=.++++|+|++|.|+.+-. .+..|.+|-+|.|+.|+ ++.+|...|.+|++|+.|++..|.
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccc
Confidence 99999988877 678888889999999998887744 48888889999998887 888888878889999999988887
Q ss_pred ccccccccccccCCcChhhcCCCCCCCEEEeecCCCcCCCccc--ccccccceEEEEcc----ccCCCCCCcccceeecc
Q 000518 640 VEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGL--FSQKLARYKILVGD----VWDWPGKSENRRTLKLK 713 (1448)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~~~~~~----~~~~~~~~~~l~~l~l~ 713 (1448)
+. ......|++|++|+.|.+..|++..+..+. .+.+++.+...... .-.|......++.+.++
T Consensus 233 ir-----------ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 233 IR-----------IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLS 301 (873)
T ss_pred ee-----------eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccc
Confidence 75 222356778888888888888888887775 45566666554433 23466566666666665
Q ss_pred CCC--ccchHHHHhhhcccceeccccCCCchhhhcccCcCCcccccccccccccceeeecccccccccCcccccCeEecc
Q 000518 714 LPT--NIYLDEIIMNLKEIEELYLDEVPGIENVLYELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLH 791 (1448)
Q Consensus 714 ~~~--~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~fp~L~~L~l~ 791 (1448)
.+. .+....| ...++|+.|+|+...... ++.-.+..+..|+.|.|+.|. +.++-++ ...++.+|++|++.
T Consensus 302 ~NaI~rih~d~W-sftqkL~~LdLs~N~i~~--l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~----af~~lssL~~LdLr 373 (873)
T KOG4194|consen 302 YNAIQRIHIDSW-SFTQKLKELDLSSNRITR--LDEGSFRVLSQLEELNLSHNS-IDHLAEG----AFVGLSSLHKLDLR 373 (873)
T ss_pred hhhhheeecchh-hhcccceeEecccccccc--CChhHHHHHHHhhhhcccccc-hHHHHhh----HHHHhhhhhhhcCc
Confidence 542 2223333 345667777776654221 222222356677777777665 2222111 22345666666665
Q ss_pred ccccccchhcccCCcccccceeEEEEeeCCCCCcCCCchhhcCCCCccEEeeccCc
Q 000518 792 NLIHLEKICDGLLTAEFFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCN 847 (1448)
Q Consensus 792 ~~~~l~~~~~~~~~~~~~~~L~~L~L~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 847 (1448)
+..---.+-++...+..++.|++|.+.+ ++++.++. ..+.+++.|++|++.++.
T Consensus 374 ~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 374 SNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGDNA 427 (873)
T ss_pred CCeEEEEEecchhhhccchhhhheeecC-ceeeecch-hhhccCcccceecCCCCc
Confidence 4321000111122334478888888877 56777654 456778888888887754
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.73 E-value=5.2e-20 Score=207.27 Aligned_cols=367 Identities=20% Similarity=0.241 Sum_probs=223.3
Q ss_pred CCccEEEcCCCCCC-CCCCchhhcCCCCceEEEecCCcCcccCccCCCCCCCCEEeccCCCCCCC-cccCCCCCCCEEEc
Q 000518 510 PHLTSLCMNPKDPF-LHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI-AIIGNLKNLEILSL 587 (1448)
Q Consensus 510 ~~L~~L~l~~n~~~-~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~L 587 (1448)
+-.|-.++++|.++ ..+|.++ ..|+.++.|.|..+.+..+|..++.|.+|+.|.+++|++..+ ..+..|+.||.+++
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred ceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence 44555666777666 3455554 677777777777777777777777777777777777776655 56677777777777
Q ss_pred ccCCCc--ccchhhhccCccCEEeccCCCCCCccCccccCCCCCCCEEEeeCCCccccccccccccCCcChhhcCCCCCC
Q 000518 588 CCSDIE--QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHL 665 (1448)
Q Consensus 588 s~~~l~--~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 665 (1448)
..|+++ .+|..|-+|..|.+|||++|+ +++.|.+ +..-+++-.|++++|.+. ...-.-+-+|+.|
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~-LE~AKn~iVLNLS~N~Ie-----------tIPn~lfinLtDL 152 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTN-LEYAKNSIVLNLSYNNIE-----------TIPNSLFINLTDL 152 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhh-hhhcchh-hhhhcCcEEEEcccCccc-----------cCCchHHHhhHhH
Confidence 777665 567777777777777777776 7777777 677777777777777665 1122344566666
Q ss_pred CEEEeecCCCcCCCcccccccccceEEEEccccCCCCCCcccceeeccCCCccchHHHHhhhcccceeccccCCCchhhh
Q 000518 666 TTLEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNIYLDEIIMNLKEIEELYLDEVPGIENVL 745 (1448)
Q Consensus 666 ~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l 745 (1448)
-.|+++.|.+..+|+.+ ..+..|+.|.|++.+.
T Consensus 153 LfLDLS~NrLe~LPPQ~------------------------------------------RRL~~LqtL~Ls~NPL----- 185 (1255)
T KOG0444|consen 153 LFLDLSNNRLEMLPPQI------------------------------------------RRLSMLQTLKLSNNPL----- 185 (1255)
T ss_pred hhhccccchhhhcCHHH------------------------------------------HHHhhhhhhhcCCChh-----
Confidence 77777777766666543 1234455555555442
Q ss_pred cccCcCCc---ccccccccccccceeeecccccccccCcccccCeEeccccccccchhcccCCcccccceeEEEEeeCCC
Q 000518 746 YELDRKGL---PALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNLIHLEKICDGLLTAEFFSKLRIIKVRNCDK 822 (1448)
Q Consensus 746 ~~l~~~~l---~~L~~L~L~~~~~l~~i~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~C~~ 822 (1448)
..+...++ ++|..|++++..... ..+ +.....+.||..++++. ++
T Consensus 186 ~hfQLrQLPsmtsL~vLhms~TqRTl-----------~N~--------------------Ptsld~l~NL~dvDlS~-N~ 233 (1255)
T KOG0444|consen 186 NHFQLRQLPSMTSLSVLHMSNTQRTL-----------DNI--------------------PTSLDDLHNLRDVDLSE-NN 233 (1255)
T ss_pred hHHHHhcCccchhhhhhhcccccchh-----------hcC--------------------CCchhhhhhhhhccccc-cC
Confidence 12222233 344444444433211 011 23345577777777765 56
Q ss_pred CCcCCCchhhcCCCCccEEeeccCcchhhhhccCCCCCcCCCCccccccccccEEEccCCCCccccccccCCCCCCCCCC
Q 000518 823 LKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILKFLPQLTSFYAQLKSSDELDTPK 902 (1448)
Q Consensus 823 L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~L~~c~~L~~~~~~~~~~~~~~~~~ 902 (1448)
+..+|. .+-.+++|+.|+++++. ++++.. ....+.+|++|++++. +|+.+
T Consensus 234 Lp~vPe--cly~l~~LrrLNLS~N~-iteL~~------------~~~~W~~lEtLNlSrN-QLt~L-------------- 283 (1255)
T KOG0444|consen 234 LPIVPE--CLYKLRNLRRLNLSGNK-ITELNM------------TEGEWENLETLNLSRN-QLTVL-------------- 283 (1255)
T ss_pred CCcchH--HHhhhhhhheeccCcCc-eeeeec------------cHHHHhhhhhhccccc-hhccc--------------
Confidence 666654 34567888888888744 333322 2234667788877763 33332
Q ss_pred CCcccccccccccceeccccccccccCCCCCCCCcccccccEEEEcccCCccccccchhhhhccccceEEEeccccccee
Q 000518 903 PLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICHCTVLEEI 982 (1448)
Q Consensus 903 ~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~I~~C~~L~~l 982 (1448)
......++.|++|.+.++.+.= ...++..+.+..|+.+...+ ++|.-+ +.+++.|+.|+.|.++ |..|..+
T Consensus 284 --P~avcKL~kL~kLy~n~NkL~F---eGiPSGIGKL~~Levf~aan-N~LElV--PEglcRC~kL~kL~L~-~NrLiTL 354 (1255)
T KOG0444|consen 284 --PDAVCKLTKLTKLYANNNKLTF---EGIPSGIGKLIQLEVFHAAN-NKLELV--PEGLCRCVKLQKLKLD-HNRLITL 354 (1255)
T ss_pred --hHHHhhhHHHHHHHhccCcccc---cCCccchhhhhhhHHHHhhc-cccccC--chhhhhhHHHHHhccc-ccceeec
Confidence 2233447788888777665221 11112122344555555444 345544 3577889999999987 4455555
Q ss_pred ecccccccccceeecCccceecccCCCccceecC
Q 000518 983 VSKERGEEATATFVFPKVTYLKLCNLSELITFYP 1016 (1448)
Q Consensus 983 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~ 1016 (1448)
+. ....+|.|+.|++++.|+|..-|.
T Consensus 355 Pe--------aIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 355 PE--------AIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hh--------hhhhcCCcceeeccCCcCccCCCC
Confidence 42 233588999999999999986554
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.71 E-value=4e-19 Score=200.26 Aligned_cols=195 Identities=24% Similarity=0.306 Sum_probs=157.9
Q ss_pred ccccceEEEcccCCCCCCCCCC-CCCCccEEEcCCCCCC-CCCCchhhcCCCCceEEEecCCcCcccCccCCCCCCCCEE
Q 000518 486 MLKNCIAIFLHDINTGELPEGL-EYPHLTSLCMNPKDPF-LHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESL 563 (1448)
Q Consensus 486 ~~~~~r~lsl~~~~~~~lp~~~-~~~~L~~L~l~~n~~~-~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L 563 (1448)
.++++.|+++..|.+.++...+ .++.||++++..|++- ..+|.++| +++.|.+|||++|.+.+.|..+.+-+++-+|
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 3567889999999887777665 8999999999988763 57899886 6999999999999999999999999999999
Q ss_pred eccCCCCCCC--cccCCCCCCCEEEcccCCCcccchhhhccCccCEEeccCCCCCCccCccccCCCCCCCEEEeeCCCcc
Q 000518 564 CLDQCILGDI--AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVE 641 (1448)
Q Consensus 564 ~L~~~~i~~l--~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 641 (1448)
+|++|+|..+ +-+-+|+-|-+||||+|.+..||+.+.+|.+||+|+|++|. +..+.-..+-.+++|++|.++++.-+
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccch
Confidence 9999999887 56889999999999999999999999999999999999987 43332222456788889998887544
Q ss_pred ccccccccccCCcChhhcCCCCCCCEEEeecCCCcCCCccc-ccccccceEE
Q 000518 642 WEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGL-FSQKLARYKI 692 (1448)
Q Consensus 642 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~~ 692 (1448)
....+..+..|.+|+.++++.|.+..+|.-+ ...+|.++++
T Consensus 211 ----------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNL 252 (1255)
T KOG0444|consen 211 ----------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNL 252 (1255)
T ss_pred ----------hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheecc
Confidence 1234566777788888888888877777543 4455555544
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=4.6e-16 Score=148.74 Aligned_cols=167 Identities=27% Similarity=0.432 Sum_probs=132.2
Q ss_pred CCCCCCCCCCCCccEEEcCCCCCCCCCCchhhcCCCCceEEEecCCcCcccCccCCCCCCCCEEeccCCCCCCC-cccCC
Q 000518 500 TGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI-AIIGN 578 (1448)
Q Consensus 500 ~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~ 578 (1448)
+.++|..+.++++..|-+++|.+ ..+|.++ ..+++|++|++++|.+.++|.+++.++.||.|++.-|++..+ ..||.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl-~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKL-TVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCce-eecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 34566666777777888888776 4556664 778888888888888888888888888888888888877655 77888
Q ss_pred CCCCCEEEcccCCCc--ccchhhhccCccCEEeccCCCCCCccCccccCCCCCCCEEEeeCCCccccccccccccCCcCh
Q 000518 579 LKNLEILSLCCSDIE--QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASL 656 (1448)
Q Consensus 579 L~~L~~L~Ls~~~l~--~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 656 (1448)
++-|++||+.+|++. .+|..+-.++.|+.|.++.|. ...+|++ +++|++||.|.+.+|.+. ..+
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll------------~lp 166 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL------------SLP 166 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh------------hCc
Confidence 888888888888776 678888888888888888876 7778887 888888888888887654 356
Q ss_pred hhcCCCCCCCEEEeecCCCcCCCccc
Q 000518 657 QELSILSHLTTLEIHIRDAVILPKGL 682 (1448)
Q Consensus 657 ~~l~~L~~L~~L~l~~~~~~~~~~~~ 682 (1448)
.+++.++.|+.|+|++|..+.+|+++
T Consensus 167 keig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHHHHhcccceeeecChhh
Confidence 78888888888888888888887764
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=2.5e-15 Score=143.78 Aligned_cols=156 Identities=28% Similarity=0.428 Sum_probs=140.6
Q ss_pred CCccccccceEEEcccCCCCCCCCCC-CCCCccEEEcCCCCCCCCCCchhhcCCCCceEEEecCCcCcccCccCCCCCCC
Q 000518 482 PNKDMLKNCIAIFLHDINTGELPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNL 560 (1448)
Q Consensus 482 ~~~~~~~~~r~lsl~~~~~~~lp~~~-~~~~L~~L~l~~n~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L 560 (1448)
++--....++++.++.|.+..+|+.+ .+.+|++|++++|++ ..+|.++ +.+++||.|+++-|.+..+|..|+.++-|
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi-e~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI-EELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh-hhcChhh-hhchhhhheecchhhhhcCccccCCCchh
Confidence 33334566889999999999999988 899999999999987 7788875 99999999999999999999999999999
Q ss_pred CEEeccCCCCCC--C-cccCCCCCCCEEEcccCCCcccchhhhccCccCEEeccCCCCCCccCccccCCCCCCCEEEeeC
Q 000518 561 ESLCLDQCILGD--I-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGN 637 (1448)
Q Consensus 561 r~L~L~~~~i~~--l-~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~ 637 (1448)
++|||.+|++.. + ..|..+..|+-|.++.|.++-+|..+++|++||.|.+..|. +-.+|.+ ++.|+.|++|++.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhccc
Confidence 999999998854 3 67888899999999999999999999999999999999987 7789999 99999999999999
Q ss_pred CCcc
Q 000518 638 TSVE 641 (1448)
Q Consensus 638 ~~~~ 641 (1448)
|.+.
T Consensus 183 nrl~ 186 (264)
T KOG0617|consen 183 NRLT 186 (264)
T ss_pred ceee
Confidence 9876
No 17
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.32 E-value=4.7e-11 Score=161.35 Aligned_cols=293 Identities=16% Similarity=0.200 Sum_probs=180.4
Q ss_pred CccccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC-cCHHHHHHHHHHHh
Q 000518 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-PDLKRIRREIADQL 215 (1448)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l 215 (1448)
....++-|....+.+-+ ....+++.|+|++|.||||++.++... ++.++|+++... .+...+...++..+
T Consensus 12 ~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 12 RLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred CccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHH
Confidence 34567778766655543 246789999999999999999998853 226899999754 46666666666666
Q ss_pred CCCCCC--------------CChHHHHHHHHHHHHc-cCcEEEEEcCCCCcc--chh-hccCCCCCCCCCcEEEEEeccc
Q 000518 216 GLNFCE--------------ESDSERIMMLCNRLKR-EKKILVILDDIWTSL--DLE-RTGIPFGDVHRGCKILVTSRRR 277 (1448)
Q Consensus 216 ~~~~~~--------------~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~--~~~-~l~~~l~~~~~gs~ilvTTR~~ 277 (1448)
+..... .........+...+.. +.+++|||||+...+ ... .+...+.....+.++|||||..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 321111 1112233445555544 688999999996642 111 2222222234567888999985
Q ss_pred hhhhh-cC-cccceEEee----cCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHHHHhcCCChHHHH
Q 000518 278 DVLVS-EM-HCQNNYCVS----VLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWK 351 (1448)
Q Consensus 278 ~v~~~-~~-~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~ 351 (1448)
..... .. ......++. +|+.+|+.++|....|.... .+.+.+|.+.++|.|+++..++..++...... .
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~-~ 237 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSSL-H 237 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCch-h
Confidence 32211 01 112245555 89999999999887764332 34467899999999999999998776543210 1
Q ss_pred HHHHHHhhhccCCcchHHHHHhH-HHHHHcccCCCchHHHHHHhccCCCCCCccHHHHHHHHhccccccchhhHHHHHHH
Q 000518 352 KALQELRFSARNFTGLEALLGST-IELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDR 430 (1448)
Q Consensus 352 ~~l~~l~~~~~~~~~~~~~~~~~-l~~sy~~L~~~~lk~cfl~~s~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~ 430 (1448)
.....+. .... ..+. .. ..-.|+.||++ .+.+++..|+++. +.. ++...-. | . .+.
T Consensus 238 ~~~~~~~--~~~~---~~~~-~~l~~~v~~~l~~~-~~~~l~~~a~~~~---~~~-~l~~~l~--~---~----~~~--- 294 (903)
T PRK04841 238 DSARRLA--GINA---SHLS-DYLVEEVLDNVDLE-TRHFLLRCSVLRS---MND-ALIVRVT--G---E----ENG--- 294 (903)
T ss_pred hhhHhhc--CCCc---hhHH-HHHHHHHHhcCCHH-HHHHHHHhccccc---CCH-HHHHHHc--C---C----CcH---
Confidence 1111111 0001 1133 33 33347899998 8999999999975 222 2222111 1 0 111
Q ss_pred HHHHHHhHhccccccc-C-CCCCceehhhHHHHHHHHhh
Q 000518 431 VYALVRGLKDTCLLHD-D-DTADWFSMLGFVRNVAISIA 467 (1448)
Q Consensus 431 ~~~~l~~L~~~~ll~~-~-~~~~~~~mHdlv~~~a~~~~ 467 (1448)
.+.+++|.+++++.. . +...+|+.|++++++++...
T Consensus 295 -~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 295 -QMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred -HHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 234888889998753 3 33458999999999998764
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.27 E-value=4.4e-11 Score=149.33 Aligned_cols=155 Identities=24% Similarity=0.288 Sum_probs=100.1
Q ss_pred eEEEcccCCCCCCCCCCCCCCccEEEcCCCCCCCCCCchhhcCCCCceEEEecCCcCcccCccCCCCCCCCEEeccCCCC
Q 000518 491 IAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCIL 570 (1448)
Q Consensus 491 r~lsl~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i 570 (1448)
..+.+.++.+..+|..+ .++|+.|++..|++ ..+|. .+++|++|++++|.++.+|.. ..+|+.|++++|.+
T Consensus 204 ~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~L-t~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L 274 (788)
T PRK15387 204 AVLNVGESGLTTLPDCL-PAHITTLVIPDNNL-TSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL 274 (788)
T ss_pred cEEEcCCCCCCcCCcch-hcCCCEEEccCCcC-CCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCch
Confidence 35566667777777655 24677788777766 34554 246778888888877777653 35677778887777
Q ss_pred CCCcccCCCCCCCEEEcccCCCcccchhhhccCccCEEeccCCCCCCccCccccCCCCCCCEEEeeCCCccccccccccc
Q 000518 571 GDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLE 650 (1448)
Q Consensus 571 ~~l~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~ 650 (1448)
..++. .+.+|+.|++++|.++.+|.. +++|++|++++|+ +..+|.. . .+|+.|++++|.+..
T Consensus 275 ~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l-p---~~L~~L~Ls~N~L~~-------- 336 (788)
T PRK15387 275 THLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL-P---SELCKLWAYNNQLTS-------- 336 (788)
T ss_pred hhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC-c---ccccccccccCcccc--------
Confidence 66533 235677788888877777753 4567888887775 6666652 2 346667777766541
Q ss_pred cCCcChhhcCCCCCCCEEEeecCCCcCCC
Q 000518 651 RNNASLQELSILSHLTTLEIHIRDAVILP 679 (1448)
Q Consensus 651 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 679 (1448)
+.. ...+|+.|++++|.+..+|
T Consensus 337 -----LP~--lp~~Lq~LdLS~N~Ls~LP 358 (788)
T PRK15387 337 -----LPT--LPSGLQELSVSDNQLASLP 358 (788)
T ss_pred -----ccc--cccccceEecCCCccCCCC
Confidence 011 1136777888777766555
No 19
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.27 E-value=2.4e-10 Score=137.51 Aligned_cols=293 Identities=22% Similarity=0.206 Sum_probs=190.5
Q ss_pred ccccccHHHHHHHHHHHHc-CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC-cCHHHHHHHHHHHh
Q 000518 138 HEFIESRESILNDILDALR-GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-PDLKRIRREIADQL 215 (1448)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~-~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l 215 (1448)
....+-|.... +.|. ..+.+.+.|..|+|.|||||+.+++.... .=..+.|.++++. .++..+...++..+
T Consensus 18 ~~~~v~R~rL~----~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~---~~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 18 PDNYVVRPRLL----DRLRRANDYRLILISAPAGFGKTTLLAQWRELAA---DGAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred cccccccHHHH----HHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcC---cccceeEeecCCccCCHHHHHHHHHHHH
Confidence 44556666544 4444 34789999999999999999999987332 2356899998765 46788888888777
Q ss_pred CCCCCCC--------------ChHHHHHHHHHHHHc-cCcEEEEEcCCC---CccchhhccCCCCCCCCCcEEEEEeccc
Q 000518 216 GLNFCEE--------------SDSERIMMLCNRLKR-EKKILVILDDIW---TSLDLERTGIPFGDVHRGCKILVTSRRR 277 (1448)
Q Consensus 216 ~~~~~~~--------------~~~~~~~~l~~~l~~-~k~~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 277 (1448)
+.-.+.. +.......+...+.. .++..+||||-- +..--..+...+.....+-.+|||||.+
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 6433322 222344455555544 478899999953 3322233333344455788999999988
Q ss_pred hhhhh--cCcccceEEeec----CChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHHHHhcCCChHHHH
Q 000518 278 DVLVS--EMHCQNNYCVSV----LNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWK 351 (1448)
Q Consensus 278 ~v~~~--~~~~~~~~~l~~----L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~ 351 (1448)
.-... ..-....++++. |+.+|+.++|....|..-+..+ ++.+.+..+|.+-|+..++-.+++....+
T Consensus 171 P~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~----~~~L~~~teGW~~al~L~aLa~~~~~~~~-- 244 (894)
T COG2909 171 PQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAAD----LKALYDRTEGWAAALQLIALALRNNTSAE-- 244 (894)
T ss_pred CCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHH----HHHHHhhcccHHHHHHHHHHHccCCCcHH--
Confidence 65442 011122344443 8999999999887655444333 67899999999999999999998443322
Q ss_pred HHHHHHhhhccCCcchHH-HHHhHHHHHHcccCCCchHHHHHHhccCCCCCCccHHHHHHHHhccccccchhhHHHHHHH
Q 000518 352 KALQELRFSARNFTGLEA-LLGSTIELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDR 430 (1448)
Q Consensus 352 ~~l~~l~~~~~~~~~~~~-~~~~~l~~sy~~L~~~~lk~cfl~~s~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~ 430 (1448)
..+..+ .+..+ +-.-...--++.||++ +|.+++-||+++.-+ ++|+..-.+++ .
T Consensus 245 q~~~~L-------sG~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f~----~eL~~~Ltg~~-------------n 299 (894)
T COG2909 245 QSLRGL-------SGAASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRFN----DELCNALTGEE-------------N 299 (894)
T ss_pred HHhhhc-------cchHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHhh----HHHHHHHhcCC-------------c
Confidence 111111 11111 1112344456899998 899999999997621 33433222111 2
Q ss_pred HHHHHHhHhccccccc--CCCCCceehhhHHHHHHHHhhc
Q 000518 431 VYALVRGLKDTCLLHD--DDTADWFSMLGFVRNVAISIAS 468 (1448)
Q Consensus 431 ~~~~l~~L~~~~ll~~--~~~~~~~~mHdlv~~~a~~~~~ 468 (1448)
+..++++|.++++|.. ++...+|+.|.++.||.+.--+
T Consensus 300 g~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 300 GQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred HHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhc
Confidence 2345899999998863 4667799999999999987533
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.23 E-value=2.7e-11 Score=152.48 Aligned_cols=137 Identities=17% Similarity=0.348 Sum_probs=91.3
Q ss_pred ceEEEcccCCCCCCCCCCCCCCccEEEcCCCCCCCCCCchhhcCCCCceEEEecCCcCcccCccCCCCCCCCEEeccCCC
Q 000518 490 CIAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCI 569 (1448)
Q Consensus 490 ~r~lsl~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~ 569 (1448)
...+.+.++.+..+|..+ .++|+.|++++|.+ ..+|..++ .+|++|++++|.++.+|..+. .+|+.|+|++|.
T Consensus 180 ~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~L-tsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 180 KTELRLKILGLTTIPACI-PEQITTLILDNNEL-KSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred ceEEEeCCCCcCcCCccc-ccCCcEEEecCCCC-CcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 456677777777777654 35677888887776 36676553 467788888887777776554 367777777777
Q ss_pred CCCC-cccCCCCCCCEEEcccCCCcccchhhhccCccCEEeccCCCCCCccCccccCCCCCCCEEEeeCCCcc
Q 000518 570 LGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVE 641 (1448)
Q Consensus 570 i~~l-~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 641 (1448)
+..+ ..+. .+|++|++++|.+..+|..+. .+|++|++++|+ +..+|.. +. .+|++|++++|.+.
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLT 317 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCccc
Confidence 7665 2332 467777777777777776554 467777777765 6666654 22 35666777666554
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.17 E-value=1.4e-10 Score=146.24 Aligned_cols=172 Identities=21% Similarity=0.324 Sum_probs=135.0
Q ss_pred cccCCCccccccceEEEcccCCCCCCCCCCCCCCccEEEcCCCCCCCCCCchhhcCCCCceEEEecCCcCcccCccCCCC
Q 000518 478 LIEWPNKDMLKNCIAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHL 557 (1448)
Q Consensus 478 ~~~~~~~~~~~~~r~lsl~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L 557 (1448)
....|.. ....++.+.+.+|.+..+|..+ .++|++|++++|.+ ..+|..++ .+|+.|+|++|.+..+|..+.
T Consensus 190 LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~L-tsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~-- 261 (754)
T PRK15370 190 LTTIPAC-IPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQL-TSIPATLP---DTIQEMELSINRITELPERLP-- 261 (754)
T ss_pred cCcCCcc-cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCcc-ccCChhhh---ccccEEECcCCccCcCChhHh--
Confidence 3344432 4567999999999999999766 46999999999987 47787653 479999999999999998775
Q ss_pred CCCCEEeccCCCCCCC-cccCCCCCCCEEEcccCCCcccchhhhccCccCEEeccCCCCCCccCccccCCCCCCCEEEee
Q 000518 558 PNLESLCLDQCILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLG 636 (1448)
Q Consensus 558 ~~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~ 636 (1448)
.+|++|++++|.+..+ ..+. .+|++|++++|.++.+|..+. .+|++|++++|. +..+|.. + .++|+.|+++
T Consensus 262 s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~~sL~~L~Ls 333 (754)
T PRK15370 262 SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--PPGLKTLEAG 333 (754)
T ss_pred CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--cccceecccc
Confidence 5899999999999877 3343 589999999999999987654 479999999987 7788865 3 3689999999
Q ss_pred CCCccccccccccccCCcChhhcCCCCCCCEEEeecCCCcCCC
Q 000518 637 NTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILP 679 (1448)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 679 (1448)
+|.+.. .+..+ .++|+.|++++|.+..+|
T Consensus 334 ~N~Lt~------------LP~~l--~~sL~~L~Ls~N~L~~LP 362 (754)
T PRK15370 334 ENALTS------------LPASL--PPELQVLDVSKNQITVLP 362 (754)
T ss_pred CCcccc------------CChhh--cCcccEEECCCCCCCcCC
Confidence 987751 11222 258999999988776555
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.17 E-value=3.4e-11 Score=153.90 Aligned_cols=128 Identities=27% Similarity=0.365 Sum_probs=99.2
Q ss_pred CCCCceEEEecCCcCcccCccCCCCCCCCEEeccCCC--CCCC--cccCCCCCCCEEEcccC-CCcccchhhhccCccCE
Q 000518 533 GMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCI--LGDI--AIIGNLKNLEILSLCCS-DIEQLPREIGELTQLKL 607 (1448)
Q Consensus 533 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~--i~~l--~~i~~L~~L~~L~Ls~~-~l~~LP~~i~~L~~L~~ 607 (1448)
+....|.+.+.+|.+..++.+..+ +.|++|-+.+|. +..+ ..|..++.|++|||++| .+.+||.+|++|.+||+
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred chhheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 446677777777777766655433 368888888775 4444 34888899999999866 67899999999999999
Q ss_pred EeccCCCCCCccCccccCCCCCCCEEEeeCCCccccccccccccCCcChhhcCCCCCCCEEEeecCC
Q 000518 608 LDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRD 674 (1448)
Q Consensus 608 L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 674 (1448)
|+++++. +..+|.+ +++|++|.+|++..+... .........|++|++|.+....
T Consensus 600 L~L~~t~-I~~LP~~-l~~Lk~L~~Lnl~~~~~l-----------~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 600 LDLSDTG-ISHLPSG-LGNLKKLIYLNLEVTGRL-----------ESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccCCC-ccccchH-HHHHHhhheecccccccc-----------ccccchhhhcccccEEEeeccc
Confidence 9999987 8999999 999999999999876543 1123455668999999987654
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.11 E-value=7.8e-10 Score=138.30 Aligned_cols=135 Identities=23% Similarity=0.221 Sum_probs=86.6
Q ss_pred cccceEEEcccCCCCCCCCCCCCCCccEEEcCCCCCCCCCCchhhcCCCCceEEEecCCcCcccCccCCCCCCCCEEecc
Q 000518 487 LKNCIAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLD 566 (1448)
Q Consensus 487 ~~~~r~lsl~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~ 566 (1448)
...++.|.+.+|.+..+|.. .++|++|++++|.+. .+|.. .++|+.|++++|.+..+|..+ .+|+.|+++
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls 290 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLT-SLPVL----PPGLLELSIFSNPLTHLPALP---SGLCKLWIF 290 (788)
T ss_pred hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccC-cccCc----ccccceeeccCCchhhhhhch---hhcCEEECc
Confidence 45678888888888888763 578888888888763 55542 356777778877777666532 456677777
Q ss_pred CCCCCCCcccCCCCCCCEEEcccCCCcccchhhhccCccCEEeccCCCCCCccCccccCCCCCCCEEEeeCCCcc
Q 000518 567 QCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVE 641 (1448)
Q Consensus 567 ~~~i~~l~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 641 (1448)
+|.++.++. .+.+|++|++++|.++.+|... .+|+.|++++|. +..+|.. ..+|++|++++|.+.
T Consensus 291 ~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~l----p~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 291 GNQLTSLPV--LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPTL----PSGLQELSVSDNQLA 355 (788)
T ss_pred CCccccccc--cccccceeECCCCccccCCCCc---ccccccccccCc-ccccccc----ccccceEecCCCccC
Confidence 777666543 2456777777777777666432 235555666654 5555531 135666666666554
No 24
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.07 E-value=1.8e-08 Score=114.97 Aligned_cols=181 Identities=17% Similarity=0.172 Sum_probs=117.0
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHH----H
Q 000518 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLC----N 233 (1448)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~----~ 233 (1448)
...+++.|+|++|+||||+++.+++...... + .++|+ +....+..++++.|+..++..............+. .
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 4456899999999999999999998875221 1 12233 33445778899999999887654433333333333 2
Q ss_pred HHHccCcEEEEEcCCCCcc--chhhccCCC---CCCCCCcEEEEEeccchhhhh---------cCcccceEEeecCChHH
Q 000518 234 RLKREKKILVILDDIWTSL--DLERTGIPF---GDVHRGCKILVTSRRRDVLVS---------EMHCQNNYCVSVLNKEE 299 (1448)
Q Consensus 234 ~l~~~k~~LlVlDdv~~~~--~~~~l~~~l---~~~~~gs~ilvTTR~~~v~~~---------~~~~~~~~~l~~L~~~e 299 (1448)
....+++.+||+||++... .++.+.... ........|++|.... .... .......+++++++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 3335788999999998863 344433211 1122233455655432 1110 01123467899999999
Q ss_pred HHHHHHHHhC---CCCCCccHHHHHHHHHHHhCCChHHHHHHHHHh
Q 000518 300 AWSLFSKVVG---NCVEDPDLQTVAIQVANECGGLPIAILTVARTL 342 (1448)
Q Consensus 300 ~~~Lf~~~~~---~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 342 (1448)
..+++...+. ......-..+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999988773 211222335788999999999999999988876
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.06 E-value=9.3e-12 Score=136.86 Aligned_cols=70 Identities=23% Similarity=0.306 Sum_probs=40.5
Q ss_pred ccccccEEEEcccCCccccccchhhhhccccceEEEecccccceeecccccccccceeecCccceecccCCCccce
Q 000518 938 GIQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICHCTVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELIT 1013 (1448)
Q Consensus 938 ~l~~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~I~~C~~L~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~ 1013 (1448)
.+|++++|.|.+|.+++.-...+....++.|+.|++..|.+++...-.. ..-.+|+|++|.++.|+....
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~------la~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY------LAEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH------HHHhhhhHHHhhhccCchhhc
Confidence 4566666666666666654444455666666777666666666542210 111266666666666665554
No 26
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.04 E-value=2.5e-08 Score=120.48 Aligned_cols=287 Identities=21% Similarity=0.170 Sum_probs=164.5
Q ss_pred ccccccHHHHHHHHHHHHc----CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000518 138 HEFIESRESILNDILDALR----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1448)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 213 (1448)
+..+.||++++++|...+. +...+.+.|+|++|+|||++++.++++.......-.++++++....+...++.+|+.
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 4568899999999998874 334466889999999999999999998864332334667777777788899999999
Q ss_pred HhCCC-CC--CCChHHHHHHHHHHHHc-cCcEEEEEcCCCCcc------chhhccCCCCCCCCCcE--EEEEeccchhhh
Q 000518 214 QLGLN-FC--EESDSERIMMLCNRLKR-EKKILVILDDIWTSL------DLERTGIPFGDVHRGCK--ILVTSRRRDVLV 281 (1448)
Q Consensus 214 ~l~~~-~~--~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~------~~~~l~~~l~~~~~gs~--ilvTTR~~~v~~ 281 (1448)
++... .+ ..+..+..+.+.+.+.+ +++.+||||+++... .+..+..... ...+++ ||.++....+..
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcchhh
Confidence 98652 21 12334455566666653 456899999998642 2233322221 122333 566666554332
Q ss_pred h------cCcccceEEeecCChHHHHHHHHHHhCC-----CCCCccHHHHHHHHHHHhCCChHHHHHHHHHh--c---CC
Q 000518 282 S------EMHCQNNYCVSVLNKEEAWSLFSKVVGN-----CVEDPDLQTVAIQVANECGGLPIAILTVARTL--R---NK 345 (1448)
Q Consensus 282 ~------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~-----~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l--~---~~ 345 (1448)
. ..-....+.+++++.++..+++..++.. ..++..++.+++......|..+.|+.++-.+. . +.
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~ 267 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGS 267 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 1 0111346789999999999999988732 12222223333333333455777777764432 1 11
Q ss_pred C---hHHHHHHHHHHhhhccCCcchHHHHHhHHHHHHcccCCCchHHHHHHh-c-cCCCC-CCccHHHHHHH--Hhc--c
Q 000518 346 P---LFVWKKALQELRFSARNFTGLEALLGSTIELIYNYLEGEELKLTFLLC-S-LMKHP-CDAPIMDLLKY--GTG--L 415 (1448)
Q Consensus 346 ~---~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~-s-~fp~~-~~~~i~~li~~--w~~--~ 415 (1448)
. ....+.+.+... .....-.+..||.+ +..+++. + ....+ ......++... .++ .
T Consensus 268 ~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~~~--~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~ 332 (394)
T PRK00411 268 RKVTEEDVRKAYEKSE-------------IVHLSEVLRTLPLH--EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL 332 (394)
T ss_pred CCcCHHHHHHHHHHHH-------------HHHHHHHHhcCCHH--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc
Confidence 1 122444444332 03445567899987 3334332 2 22210 12333333221 111 1
Q ss_pred ccccchhhHHHHHHHHHHHHHhHhccccccc
Q 000518 416 GLFEDIYTMQERRDRVYALVRGLKDTCLLHD 446 (1448)
Q Consensus 416 g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~ 446 (1448)
|.-.- ....+.++++.|...+++..
T Consensus 333 ~~~~~------~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 333 GYEPR------THTRFYEYINKLDMLGIINT 357 (394)
T ss_pred CCCcC------cHHHHHHHHHHHHhcCCeEE
Confidence 21110 12345667888888888864
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.02 E-value=1.2e-11 Score=134.66 Aligned_cols=138 Identities=25% Similarity=0.389 Sum_probs=101.9
Q ss_pred CCCCCCCCCCCCCccEEEcCCCCCCCCCCchhhcCCCCceEEEecCCcCccc-CccCCCCCCCCEEeccC-CCCCCC--c
Q 000518 499 NTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTL-PSSFCHLPNLESLCLDQ-CILGDI--A 574 (1448)
Q Consensus 499 ~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~-~~i~~l--~ 574 (1448)
.+.++|..+ .+....+.|..|.+ ..+|+..|+.+++||.|||++|.|+.+ |..|..|..|-.|-+-+ |+|+++ .
T Consensus 57 GL~eVP~~L-P~~tveirLdqN~I-~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 57 GLTEVPANL-PPETVEIRLDQNQI-SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CcccCcccC-CCcceEEEeccCCc-ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 355666554 34556677888877 678888888888888888888888866 77788888877776655 778777 5
Q ss_pred ccCCCCCCCEEEcccCCCcccch-hhhccCccCEEeccCCCCCCccCccccCCCCCCCEEEeeCCC
Q 000518 575 IIGNLKNLEILSLCCSDIEQLPR-EIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTS 639 (1448)
Q Consensus 575 ~i~~L~~L~~L~Ls~~~l~~LP~-~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~ 639 (1448)
.|++|..|+-|.+.-|.+..++. .+..|++|..|.+..|. +..++.+.+..+..++++.+..|.
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 68888888888887777775543 47778888888887765 777777667777777777765543
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.01 E-value=7.5e-12 Score=137.57 Aligned_cols=199 Identities=16% Similarity=0.132 Sum_probs=129.8
Q ss_pred cccceeEEEEeeCCCCCcCCCchhhcCCCCccEEeeccCcchhhhhccCCCCCcCCCCccccccccccEEEccCCCCccc
Q 000518 808 FFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILKFLPQLTS 887 (1448)
Q Consensus 808 ~~~~L~~L~L~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~f~~L~~L~L~~c~~L~~ 887 (1448)
..|++++|.+.+|.++++-........++.|++|.+..|.++++....... ..|++|+.|++++||.+..
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la----------~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA----------EGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH----------HhhhhHHHhhhccCchhhc
Confidence 456777777777777776554455567788888888888877776653222 2478888888888887665
Q ss_pred cccccCCCCCCCCCCCCcccccccccccceeccccccccccCCCCCCCCcccccccEEEEcccCCccccccchhhhhccc
Q 000518 888 FYAQLKSSDELDTPKPLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFVQ 967 (1448)
Q Consensus 888 ~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~l~~l~~ 967 (1448)
- ....-......++++...||...+.-. .......++-+.++++..|..+++.....+...+..
T Consensus 232 ~--------------gv~~~~rG~~~l~~~~~kGC~e~~le~--l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 232 N--------------GVQALQRGCKELEKLSLKGCLELELEA--LLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred C--------------cchHHhccchhhhhhhhcccccccHHH--HHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 1 001111123446666666664222110 111112355677777888988887643445667888
Q ss_pred cceEEEecccccceeecccccccccceeecCccceecccCCCccceecCCcccccCCCcceEEeccCCcee
Q 000518 968 LQHLEICHCTVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKVK 1038 (1448)
Q Consensus 968 L~~L~I~~C~~L~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~C~~L~ 1038 (1448)
|+.|..++|..+...+.. ......++|+.|.+..|..+++.........|+.|+.+++.+|....
T Consensus 296 lq~l~~s~~t~~~d~~l~------aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~ 360 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLW------ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT 360 (483)
T ss_pred hhhhcccCCCCCchHHHH------HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceeh
Confidence 999999999887654322 22234688999999999988887777777788899999998886543
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.00 E-value=3.7e-11 Score=130.88 Aligned_cols=131 Identities=26% Similarity=0.386 Sum_probs=89.2
Q ss_pred cccccCCCccccccceEEEcccCCCCCCCCCC--CCCCccEEEcCCCCCCCCCCchhhcCCCCceEEEecC-CcCcccCc
Q 000518 476 DALIEWPNKDMLKNCIAIFLHDINTGELPEGL--EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTR-MKLLTLPS 552 (1448)
Q Consensus 476 ~~~~~~~~~~~~~~~r~lsl~~~~~~~lp~~~--~~~~L~~L~l~~n~~~~~~~~~~f~~l~~Lr~L~L~~-~~i~~lp~ 552 (1448)
.+..++|. +.+.....|.+..|.+..+|+.. .+++||.|+|+.|++. .|.++.|.+++.|-.|-+.+ |+|+.+|.
T Consensus 56 ~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 56 KGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 35566664 45777888999999999999876 7899999999999984 44445578888877766655 88888885
Q ss_pred c-CCCCCCCCEEeccCCCCCCC--cccCCCCCCCEEEcccCCCcccch-hhhccCccCEE
Q 000518 553 S-FCHLPNLESLCLDQCILGDI--AIIGNLKNLEILSLCCSDIEQLPR-EIGELTQLKLL 608 (1448)
Q Consensus 553 ~-i~~L~~Lr~L~L~~~~i~~l--~~i~~L~~L~~L~Ls~~~l~~LP~-~i~~L~~L~~L 608 (1448)
. |..|..|+.|.+.-|.+.-+ ..+..|++|..|.+..|.+..++. .+..+..++++
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTL 193 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchH
Confidence 4 67777777777766665544 455555555555555555554443 24444444443
No 30
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.97 E-value=1.8e-09 Score=120.50 Aligned_cols=194 Identities=20% Similarity=0.207 Sum_probs=104.3
Q ss_pred cccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHH----------
Q 000518 141 IESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE---------- 210 (1448)
Q Consensus 141 ~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~---------- 210 (1448)
|+||++++++|.+++.....+.+.|+|+.|+|||+|++++.+..+.. -..++|+...+......+...
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~--~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEK--GYKVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT----EECCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhc--CCcEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 68999999999999886667899999999999999999999987422 123445544333322211111
Q ss_pred ---HHHHhCCCC-------CCCChHHHHHHHHHHHHc-cCcEEEEEcCCCCcc-c----------hhhccCCCCCCCCCc
Q 000518 211 ---IADQLGLNF-------CEESDSERIMMLCNRLKR-EKKILVILDDIWTSL-D----------LERTGIPFGDVHRGC 268 (1448)
Q Consensus 211 ---i~~~l~~~~-------~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~-~----------~~~l~~~l~~~~~gs 268 (1448)
+...+.... ...........+.+.+.+ +++.+||+||+.... . +..+........+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS 158 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce
Confidence 111111100 011123344555555554 466999999987654 1 111111111223334
Q ss_pred EEEEEeccchhhhh-------cCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000518 269 KILVTSRRRDVLVS-------EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1448)
Q Consensus 269 ~ilvTTR~~~v~~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 337 (1448)
+|++......... ..+....+.+++|+.+++++++...+.....-+...+..++|...+||+|..|..
T Consensus 159 -~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 159 -IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp -EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred -EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 4444443333321 2333445999999999999999997643311112355678999999999988764
No 31
>PF05729 NACHT: NACHT domain
Probab=98.95 E-value=3.9e-09 Score=110.75 Aligned_cols=143 Identities=22% Similarity=0.279 Sum_probs=92.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCC----cceEEEEEecCCcCHH---HHHHHHHHHhCCCCCCCChHHHHHHHHH
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRI----FDEVVFAEVSQTPDLK---RIRREIADQLGLNFCEESDSERIMMLCN 233 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~----f~~~~wv~v~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 233 (1448)
+++.|+|.+|+||||+++.++.+...... +..++|+......... .+...|.......... .......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP-----IEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh-----hHHHHHH
Confidence 57999999999999999999998875543 3456677665544332 3444444433322111 1112233
Q ss_pred HHHccCcEEEEEcCCCCccc---------hhhccCC-CCC-CCCCcEEEEEeccchh--hhhcCcccceEEeecCChHHH
Q 000518 234 RLKREKKILVILDDIWTSLD---------LERTGIP-FGD-VHRGCKILVTSRRRDV--LVSEMHCQNNYCVSVLNKEEA 300 (1448)
Q Consensus 234 ~l~~~k~~LlVlDdv~~~~~---------~~~l~~~-l~~-~~~gs~ilvTTR~~~v--~~~~~~~~~~~~l~~L~~~e~ 300 (1448)
.+.+.++++||+|++++... +..+... +.. ..++++|+||+|.... ..........+++.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 34457999999999977632 1222211 221 2568999999998877 222234446899999999999
Q ss_pred HHHHHHHh
Q 000518 301 WSLFSKVV 308 (1448)
Q Consensus 301 ~~Lf~~~~ 308 (1448)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998875
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.85 E-value=1.8e-10 Score=131.26 Aligned_cols=176 Identities=26% Similarity=0.376 Sum_probs=151.5
Q ss_pred ceEEEcccCCCCCCCCCC-CCCCccEEEcCCCCCCCCCCchhhcCCCCceEEEecCCcCcccCccCCCCCCCCEEeccCC
Q 000518 490 CIAIFLHDINTGELPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQC 568 (1448)
Q Consensus 490 ~r~lsl~~~~~~~lp~~~-~~~~L~~L~l~~n~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~ 568 (1448)
.....++.|.+.++|..+ .+-.|..+.+..|.+ ..+|..+ .++..|.+|+|+.|.++.+|..++.|+ |++|-+++|
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~-r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCI-RTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccc-eecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC
Confidence 345567778888898877 677788888888876 6677764 889999999999999999999988875 899999999
Q ss_pred CCCCC-cccCCCCCCCEEEcccCCCcccchhhhccCccCEEeccCCCCCCccCccccCCCCCCCEEEeeCCCcccccccc
Q 000518 569 ILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGL 647 (1448)
Q Consensus 569 ~i~~l-~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~ 647 (1448)
+++.+ ..|+.+.+|..||.++|.+..+|..++.|.+|+.|+++.|+ +..+|.+ +..| .|..||++.|++.
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis------ 224 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKIS------ 224 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCcee------
Confidence 99877 78999999999999999999999999999999999999987 8889988 6644 5889999999876
Q ss_pred ccccCCcChhhcCCCCCCCEEEeecCCCcCCCcccc
Q 000518 648 NLERNNASLQELSILSHLTTLEIHIRDAVILPKGLF 683 (1448)
Q Consensus 648 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 683 (1448)
..+-.+.+|.+|++|.+.+|.+.+-|..+.
T Consensus 225 ------~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC 254 (722)
T KOG0532|consen 225 ------YLPVDFRKMRHLQVLQLENNPLQSPPAQIC 254 (722)
T ss_pred ------ecchhhhhhhhheeeeeccCCCCCChHHHH
Confidence 456789999999999999999998887763
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=4.1e-10 Score=117.93 Aligned_cols=135 Identities=19% Similarity=0.203 Sum_probs=117.4
Q ss_pred CCCCceEEEecCCcCcccCccCCCCCCCCEEeccCCCCCCCcccCCCCCCCEEEcccCCCcccchhhhccCccCEEeccC
Q 000518 533 GMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSN 612 (1448)
Q Consensus 533 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~ 612 (1448)
..+.|..|||++|.|+.+-.++.-++.+|+|++++|.+..+.++..|++|+.||||+|.+.++-..-.+|.|.++|.+++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 45678999999999999989999999999999999999999889999999999999999998877778899999999999
Q ss_pred CCCCCccCccccCCCCCCCEEEeeCCCccccccccccccCCcChhhcCCCCCCCEEEeecCCCcCCCc
Q 000518 613 CSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPK 680 (1448)
Q Consensus 613 ~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 680 (1448)
|. +..+.. +++|-+|..|++++|.+. +......+++|+.|+++.+.+|.+..++.
T Consensus 362 N~-iE~LSG--L~KLYSLvnLDl~~N~Ie----------~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 362 NK-IETLSG--LRKLYSLVNLDLSSNQIE----------ELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hh-Hhhhhh--hHhhhhheeccccccchh----------hHHHhcccccccHHHHHhhcCCCccccch
Confidence 86 777765 889999999999999886 22345788999999999999988776654
No 34
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.81 E-value=2.4e-07 Score=107.55 Aligned_cols=189 Identities=13% Similarity=0.056 Sum_probs=111.7
Q ss_pred ccccccHHHHHHHHHHHHc-----CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHH
Q 000518 138 HEFIESRESILNDILDALR-----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIA 212 (1448)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 212 (1448)
...|+|++..+++|..++. ......+.++|++|+|||+||+.+++..... + ..+..+......++. ..+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l~-~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDLA-AIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhHH-HHH
Confidence 4578999999999988876 2345568899999999999999999887521 2 122222112222222 222
Q ss_pred HHhCCCC----C--CCChHHHHHHHHHHHHccCcEEEEEcCCCCccchhhccCCCCCCCCCcEEEEEeccchhhhhc-Cc
Q 000518 213 DQLGLNF----C--EESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSE-MH 285 (1448)
Q Consensus 213 ~~l~~~~----~--~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~-~~ 285 (1448)
..++... + +.-.....+.+...+ .+.+..+|+|+..+...|.. +++ +.+-|..||+...+.... ..
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~-~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAM-EDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHH-hhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHhh
Confidence 2332211 0 000111222232222 34556677776655544431 122 245566677765544321 11
Q ss_pred ccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHHH
Q 000518 286 CQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVAR 340 (1448)
Q Consensus 286 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~ 340 (1448)
....+++++++.+|..+++.+.++.... .-..+....|++.|+|.|..+..++.
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHH
Confidence 2346799999999999999998863222 12245678999999999977665554
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.80 E-value=3.5e-09 Score=108.54 Aligned_cols=130 Identities=26% Similarity=0.273 Sum_probs=50.7
Q ss_pred cCCCCceEEEecCCcCcccCccCC-CCCCCCEEeccCCCCCCCcccCCCCCCCEEEcccCCCcccchhh-hccCccCEEe
Q 000518 532 AGMPKLRVLVLTRMKLLTLPSSFC-HLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREI-GELTQLKLLD 609 (1448)
Q Consensus 532 ~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~Ls~~~l~~LP~~i-~~L~~L~~L~ 609 (1448)
.+..++|.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++.+..+.+|++|++++|.|+.++..+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 45567788888888887764 355 57788888888888888888888888888888888888886655 3688888998
Q ss_pred ccCCCCCCccCc-cccCCCCCCCEEEeeCCCccccccccccccCCcChhhcCCCCCCCEEEee
Q 000518 610 LSNCSKLKVIPP-NVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIH 671 (1448)
Q Consensus 610 Ls~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 671 (1448)
+++|+ +..+.. ..++.+++|++|++.+|.+... .......+..+++|+.|+-.
T Consensus 95 L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~--------~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK--------KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS--------TTHHHHHHHH-TT-SEETTE
T ss_pred CcCCc-CCChHHhHHHHcCCCcceeeccCCcccch--------hhHHHHHHHHcChhheeCCE
Confidence 88876 544322 2266788888888888876511 12334556677888887654
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.80 E-value=5e-09 Score=107.48 Aligned_cols=122 Identities=29% Similarity=0.398 Sum_probs=45.8
Q ss_pred cCCcCcccCccCCCCCCCCEEeccCCCCCCCcccC-CCCCCCEEEcccCCCcccchhhhccCccCEEeccCCCCCCccCc
Q 000518 543 TRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIG-NLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPP 621 (1448)
Q Consensus 543 ~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~-~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~ 621 (1448)
..+.|...|. +.+...++.|+|++|.|..++.++ .+.+|+.|++++|.|+.++ .+..|++|++|++++|. ++.++.
T Consensus 5 t~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~ 81 (175)
T PF14580_consen 5 TANMIEQIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISE 81 (175)
T ss_dssp --------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CH
T ss_pred cccccccccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCcccc
Confidence 3344444443 456668999999999999998888 6899999999999999985 68899999999999988 888876
Q ss_pred cccCCCCCCCEEEeeCCCccccccccccccCCcChhhcCCCCCCCEEEeecCCCcC
Q 000518 622 NVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVI 677 (1448)
Q Consensus 622 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 677 (1448)
.....+++|++|++++|.+. .-..+..++.+++|+.|++.+|.+..
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~----------~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKIS----------DLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp HHHHH-TT--EEE-TTS-------------SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred chHHhCCcCCEEECcCCcCC----------ChHHhHHHHcCCCcceeeccCCcccc
Confidence 52346899999999999886 12346788889999999999887653
No 37
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.78 E-value=4.4e-07 Score=108.57 Aligned_cols=197 Identities=20% Similarity=0.209 Sum_probs=123.4
Q ss_pred cccccHHHHHHHHHHHHc----CCCeEEEEEEcCCCchHHHHHHHHHHHHhcc-CCc---ceEEEEEecCCcCHHHHHHH
Q 000518 139 EFIESRESILNDILDALR----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEG-RIF---DEVVFAEVSQTPDLKRIRRE 210 (1448)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~-~~f---~~~~wv~v~~~~~~~~~~~~ 210 (1448)
..++||++++++|..++. +...+.+.|+|++|+|||++++.+++..... ... -.++|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 368999999999999886 3345689999999999999999999876421 111 24567888777788889999
Q ss_pred HHHHhC---CCCCC--CChHHHHHHHHHHHHc-cCcEEEEEcCCCCcc-c----hhhccCCC-CCCC--CCcEEEEEecc
Q 000518 211 IADQLG---LNFCE--ESDSERIMMLCNRLKR-EKKILVILDDIWTSL-D----LERTGIPF-GDVH--RGCKILVTSRR 276 (1448)
Q Consensus 211 i~~~l~---~~~~~--~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~-~----~~~l~~~l-~~~~--~gs~ilvTTR~ 276 (1448)
|+.++. ...+. .+..+....+.+.+.. +++++||||+++... . +..+.... .... ....+|++|..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 999883 32221 2233444555555543 567899999998761 1 22222210 1111 22344555544
Q ss_pred chhhhh----c--CcccceEEeecCChHHHHHHHHHHhCC----CCCCccHHHHHHHHHHHhCCChHHH
Q 000518 277 RDVLVS----E--MHCQNNYCVSVLNKEEAWSLFSKVVGN----CVEDPDLQTVAIQVANECGGLPIAI 335 (1448)
Q Consensus 277 ~~v~~~----~--~~~~~~~~l~~L~~~e~~~Lf~~~~~~----~~~~~~~~~~~~~i~~~~~glPlai 335 (1448)
...... . .-....+.+++++.+|..+++..++.. ....++..+....++....|-|..+
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 432211 0 011246899999999999999988731 1122232334455666777887544
No 38
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.76 E-value=3.7e-07 Score=106.63 Aligned_cols=277 Identities=12% Similarity=0.024 Sum_probs=145.8
Q ss_pred CCCccccccHHHHHHHHHHHHc-----CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHH
Q 000518 135 NEGHEFIESRESILNDILDALR-----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 209 (1448)
|.....|+||+..++.+..++. ....+.+.|+|++|+|||++|+.+++..... + .++..+. ......+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~ 94 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLA 94 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHH
Confidence 3456789999999998877765 2345678999999999999999999987522 1 1222211 11112222
Q ss_pred HHHHHhCCCC----CC-CChHHHHHHHHHHHHccCcEEEEEcCCCCccchhhccCCCCCCCCCcEEEEEeccchhhhhc-
Q 000518 210 EIADQLGLNF----CE-ESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSE- 283 (1448)
Q Consensus 210 ~i~~~l~~~~----~~-~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~- 283 (1448)
.++..+.... ++ +......+........+.+..+|+|+..+...+.. .++ +.+-|..|||...+....
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee---cCC---CceEEeecCCcccCCHHHH
Confidence 3333332110 00 00001111112222234555566666544322211 111 245566677755443320
Q ss_pred CcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHHHHhcCCChHHHHHHHHHHhhhccC
Q 000518 284 MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELRFSARN 363 (1448)
Q Consensus 284 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~l~~l~~~~~~ 363 (1448)
......+++++++.++..+++.+.++..... ...+.+..|++.|+|.|..+..+...+. .|.... ......
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~---~~~~I~ 239 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGVE-IDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK---GDGVIT 239 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc---CCCCCC
Confidence 1123468999999999999999988643222 2245688999999999975555544321 121110 000111
Q ss_pred CcchHHHHHhHHHHHHcccCCCchHHHHH-HhccCCCCCCccHHHHHHHHhccccccchhhHHHHHHHHHHHHH-hHhcc
Q 000518 364 FTGLEALLGSTIELIYNYLEGEELKLTFL-LCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVYALVR-GLKDT 441 (1448)
Q Consensus 364 ~~~~~~~~~~~l~~sy~~L~~~~lk~cfl-~~s~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~-~L~~~ 441 (1448)
.......+ ..+...|..|++.+ +..+. ....|+.+ ...++.+-.. ++ .+..+.+++ ++ .|++.
T Consensus 240 ~~~v~~~l-~~~~~~~~~l~~~~-~~~l~~~~~~~~~~-~~~~~~~a~~-lg----~~~~~~~~~-------~e~~Li~~ 304 (328)
T PRK00080 240 KEIADKAL-DMLGVDELGLDEMD-RKYLRTIIEKFGGG-PVGLDTLAAA-LG----EERDTIEDV-------YEPYLIQQ 304 (328)
T ss_pred HHHHHHHH-HHhCCCcCCCCHHH-HHHHHHHHHHcCCC-ceeHHHHHHH-HC----CCcchHHHH-------hhHHHHHc
Confidence 11122244 45556667787763 55553 66667663 3333333211 11 111222222 55 68889
Q ss_pred cccccC
Q 000518 442 CLLHDD 447 (1448)
Q Consensus 442 ~ll~~~ 447 (1448)
+|++..
T Consensus 305 ~li~~~ 310 (328)
T PRK00080 305 GFIQRT 310 (328)
T ss_pred CCcccC
Confidence 999754
No 39
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.71 E-value=5.7e-09 Score=122.72 Aligned_cols=131 Identities=24% Similarity=0.256 Sum_probs=62.6
Q ss_pred CCCCccEEEcCCCCCCC-----CCCchhhcCCCCceEEEecCCcCc-ccCccCCCC---CCCCEEeccCCCCCC-----C
Q 000518 508 EYPHLTSLCMNPKDPFL-----HIPDNFFAGMPKLRVLVLTRMKLL-TLPSSFCHL---PNLESLCLDQCILGD-----I 573 (1448)
Q Consensus 508 ~~~~L~~L~l~~n~~~~-----~~~~~~f~~l~~Lr~L~L~~~~i~-~lp~~i~~L---~~Lr~L~L~~~~i~~-----l 573 (1448)
..++++.|+++++.... ......|..+.+|+.|++++|.+. ..+..+..+ ++|++|++++|.+.. +
T Consensus 49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l 128 (319)
T cd00116 49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL 128 (319)
T ss_pred hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH
Confidence 34455666665554321 000122445556666666666554 222222222 236666666665542 1
Q ss_pred -cccCCC-CCCCEEEcccCCCc-----ccchhhhccCccCEEeccCCCCCC-----ccCccccCCCCCCCEEEeeCCCc
Q 000518 574 -AIIGNL-KNLEILSLCCSDIE-----QLPREIGELTQLKLLDLSNCSKLK-----VIPPNVISSLSQLEELYLGNTSV 640 (1448)
Q Consensus 574 -~~i~~L-~~L~~L~Ls~~~l~-----~LP~~i~~L~~L~~L~Ls~~~~l~-----~lp~~~l~~L~~L~~L~l~~~~~ 640 (1448)
..+..+ .+|+.|++++|.++ .++..+..+.+|++|++++|. +. .++.. +..+++|++|++++|.+
T Consensus 129 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 129 AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEG-LKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHH-HHhCCCCCEEeccCCcc
Confidence 234444 56666666666554 233344455556666666554 32 12222 33445666666665554
No 40
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.68 E-value=1.7e-08 Score=118.57 Aligned_cols=177 Identities=25% Similarity=0.267 Sum_probs=119.3
Q ss_pred ceEEEcccCCCCCCCC-------CC-CCCCccEEEcCCCCCCCCCCchhhcCCCC---ceEEEecCCcCc-----ccCcc
Q 000518 490 CIAIFLHDINTGELPE-------GL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPK---LRVLVLTRMKLL-----TLPSS 553 (1448)
Q Consensus 490 ~r~lsl~~~~~~~lp~-------~~-~~~~L~~L~l~~n~~~~~~~~~~f~~l~~---Lr~L~L~~~~i~-----~lp~~ 553 (1448)
++++.+.++.+...+. .+ .+++|+.|++++|.+....+. .|..+.. |+.|++++|.+. .+...
T Consensus 53 l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 53 LKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred ceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH-HHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 5666666655543221 22 577999999999887543333 3344444 999999999886 23455
Q ss_pred CCCC-CCCCEEeccCCCCCC-----C-cccCCCCCCCEEEcccCCCc-----ccchhhhccCccCEEeccCCCCCCc---
Q 000518 554 FCHL-PNLESLCLDQCILGD-----I-AIIGNLKNLEILSLCCSDIE-----QLPREIGELTQLKLLDLSNCSKLKV--- 618 (1448)
Q Consensus 554 i~~L-~~Lr~L~L~~~~i~~-----l-~~i~~L~~L~~L~Ls~~~l~-----~LP~~i~~L~~L~~L~Ls~~~~l~~--- 618 (1448)
+..+ ++|+.|++++|.++. + ..+..+.+|++|++++|.+. .++..+..+++|++|++++|. +..
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~ 210 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGA 210 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHH
Confidence 6677 899999999998862 2 45677889999999999887 345556677899999999986 432
Q ss_pred --cCccccCCCCCCCEEEeeCCCccccccccccccCCcChhhc-CCCCCCCEEEeecCCCc
Q 000518 619 --IPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQEL-SILSHLTTLEIHIRDAV 676 (1448)
Q Consensus 619 --lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~~L~l~~~~~~ 676 (1448)
++.. +..+++|++|++++|.+..... ......+ ...+.|+.|++.++.+.
T Consensus 211 ~~l~~~-~~~~~~L~~L~ls~n~l~~~~~-------~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 211 SALAET-LASLKSLEVLNLGDNNLTDAGA-------AALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHH-hcccCCCCEEecCCCcCchHHH-------HHHHHHHhccCCCceEEEccCCCCC
Confidence 2233 5678899999999987651000 0000111 12468888888877543
No 41
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.65 E-value=1.5e-06 Score=96.80 Aligned_cols=255 Identities=15% Similarity=0.166 Sum_probs=146.2
Q ss_pred CCCccccccHHHHHH---HHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHH
Q 000518 135 NEGHEFIESRESILN---DILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~---~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 211 (1448)
|.....++|.+..+. -|..++....+.-..+|||+|+||||||+.++.... .. |..++...+-.+-++++
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~--~~-----f~~~sAv~~gvkdlr~i 92 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN--AA-----FEALSAVTSGVKDLREI 92 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC--Cc-----eEEeccccccHHHHHHH
Confidence 444566777665442 233445567888899999999999999999998765 22 34444444322223333
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEE--Eeccchhhhh--cCc
Q 000518 212 ADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV--TSRRRDVLVS--EMH 285 (1448)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv--TTR~~~v~~~--~~~ 285 (1448)
++. -.+....+++.+|++|+|..- .+.+.+ ++...+|.-|+| ||.|+...-. ...
T Consensus 93 ~e~----------------a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 93 IEE----------------ARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred HHH----------------HHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhh
Confidence 221 122233479999999999653 344434 344457887887 6666643211 234
Q ss_pred ccceEEeecCChHHHHHHHHHHhCC-----CCCCc-cHHHHHHHHHHHhCCChHHHHHHHH----HhcCCC--hHH-HHH
Q 000518 286 CQNNYCVSVLNKEEAWSLFSKVVGN-----CVEDP-DLQTVAIQVANECGGLPIAILTVAR----TLRNKP--LFV-WKK 352 (1448)
Q Consensus 286 ~~~~~~l~~L~~~e~~~Lf~~~~~~-----~~~~~-~~~~~~~~i~~~~~glPlai~~~~~----~l~~~~--~~~-w~~ 352 (1448)
...++.+++|+.+|-..++.+.+-+ ..... ..+++.+.+++.++|=-.+.-.... .-+... ..+ -++
T Consensus 154 R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~ 233 (436)
T COG2256 154 RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEE 233 (436)
T ss_pred hhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHH
Confidence 4678999999999999999885411 11111 1244666788888886543332222 222221 111 333
Q ss_pred HHHHHhhhccC--CcchHHHHHhHHHHHHcccCCCchHHHHHHhccCCCCCCccH--HHHHHH-Hhcccccc
Q 000518 353 ALQELRFSARN--FTGLEALLGSTIELIYNYLEGEELKLTFLLCSLMKHPCDAPI--MDLLKY-GTGLGLFE 419 (1448)
Q Consensus 353 ~l~~l~~~~~~--~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp~~~~~~i--~~li~~-w~~~g~~~ 419 (1448)
++.+-.. ..+ -+...++. .++.-|...=+++ -..+.++-++-.+.|... ..|+++ |..-|+-.
T Consensus 234 ~l~~~~~-~~Dk~gD~hYdli-SA~hKSvRGSD~d--AALyylARmi~~GeDp~yiARRlv~~AsEDIGlAd 301 (436)
T COG2256 234 ILQRRSA-RFDKDGDAHYDLI-SALHKSVRGSDPD--AALYYLARMIEAGEDPLYIARRLVRIASEDIGLAD 301 (436)
T ss_pred HHhhhhh-ccCCCcchHHHHH-HHHHHhhccCCcC--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCC
Confidence 3333221 111 13344577 8888898888876 344444445544433332 666664 44555543
No 42
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.63 E-value=3.9e-07 Score=109.68 Aligned_cols=180 Identities=15% Similarity=0.159 Sum_probs=110.7
Q ss_pred CCccccccHHHHHHH---HHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHH
Q 000518 136 EGHEFIESRESILND---ILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIA 212 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~---l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 212 (1448)
.....++|++..+.. +..++.....+.+.|+|++|+||||+|+.+++... .. |+.++....-.+-++++.
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~--~~-----~~~l~a~~~~~~~ir~ii 81 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD--AP-----FEALSAVTSGVKDLREVI 81 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC--CC-----EEEEecccccHHHHHHHH
Confidence 345568888887666 77777777777899999999999999999998764 22 233332221111112222
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEE--Eeccch--hhhhcCcc
Q 000518 213 DQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV--TSRRRD--VLVSEMHC 286 (1448)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv--TTR~~~--v~~~~~~~ 286 (1448)
+. .......+++.+|++|+++.. .+.+.+...+. .|..++| ||.+.. +.......
T Consensus 82 ~~----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR 142 (413)
T PRK13342 82 EE----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSR 142 (413)
T ss_pred HH----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhcc
Confidence 11 111122368899999999865 23444433332 3555555 344332 11111233
Q ss_pred cceEEeecCChHHHHHHHHHHhCCC-CCC-ccHHHHHHHHHHHhCCChHHHHHHHHH
Q 000518 287 QNNYCVSVLNKEEAWSLFSKVVGNC-VED-PDLQTVAIQVANECGGLPIAILTVART 341 (1448)
Q Consensus 287 ~~~~~l~~L~~~e~~~Lf~~~~~~~-~~~-~~~~~~~~~i~~~~~glPlai~~~~~~ 341 (1448)
...+++.+++.++.+.++.+.+... ... ....+..+.|++.++|-+..+..+...
T Consensus 143 ~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 143 AQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred ceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4688999999999999999876321 111 223566788999999998766554443
No 43
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.58 E-value=2.5e-06 Score=104.14 Aligned_cols=203 Identities=17% Similarity=0.177 Sum_probs=121.6
Q ss_pred ccccccHHHHHHHHHHHHc----CC-CeEEEEEEcCCCchHHHHHHHHHHHHhcc---CCcc--eEEEEEecCCcCHHHH
Q 000518 138 HEFIESRESILNDILDALR----GP-YVYMIGVYGMAGIGKTTLVKEVARLAKEG---RIFD--EVVFAEVSQTPDLKRI 207 (1448)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~----~~-~~~vi~I~G~gG~GKTtLa~~~~~~~~~~---~~f~--~~~wv~v~~~~~~~~~ 207 (1448)
+..+.||++++++|...|. +. ...++.|+|++|+|||+.++.|.+..... .... .+++|++..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 3567799999999998876 22 33578899999999999999999876421 1222 3567777777788888
Q ss_pred HHHHHHHhCCCCCCC--ChHHHHHHHHHHHHc--cCcEEEEEcCCCCcc--c---hhhccCCCCCCCCCcEEEE--Eecc
Q 000518 208 RREIADQLGLNFCEE--SDSERIMMLCNRLKR--EKKILVILDDIWTSL--D---LERTGIPFGDVHRGCKILV--TSRR 276 (1448)
Q Consensus 208 ~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~--~---~~~l~~~l~~~~~gs~ilv--TTR~ 276 (1448)
...|.+++....+.. ......+.+...+.+ ....+||||+|+... . +-.+... ....+++|+| +|..
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~--~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW--PTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH--hhccCCeEEEEEecCc
Confidence 889988885443322 223344555555432 234589999997542 1 1111111 1123555544 3332
Q ss_pred chhhhh-------cCcccceEEeecCChHHHHHHHHHHhCC---CCCCccHHHHHHHHHHHhCCChHHHHHHHHHhc
Q 000518 277 RDVLVS-------EMHCQNNYCVSVLNKEEAWSLFSKVVGN---CVEDPDLQTVAIQVANECGGLPIAILTVARTLR 343 (1448)
Q Consensus 277 ~~v~~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~---~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~ 343 (1448)
...... .++ ...+..+|++.++-.+++..++.. ..++..++-+|+.++..-|-.=.||.++-.+..
T Consensus 912 lDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred hhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 221111 111 234677999999999999999853 122333344444444444445566665554443
No 44
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.58 E-value=2.6e-09 Score=122.07 Aligned_cols=172 Identities=24% Similarity=0.389 Sum_probs=133.4
Q ss_pred EEcccCCCCCCCCCC---CCCCccEEEcCCCCCCCCCCchhhcCCCCceEEEecCCcCcccCccCCCCCCCCEEeccCCC
Q 000518 493 IFLHDINTGELPEGL---EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCI 569 (1448)
Q Consensus 493 lsl~~~~~~~lp~~~---~~~~L~~L~l~~n~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~ 569 (1448)
+.+++-....+|... .+..-...+++.|.+ ..+|..+ ..+-.|..|.|..|.+..+|..+++|..|.+|||+.|+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~-~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRF-SELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhcccccc-ccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch
Confidence 344444445555432 344445677888876 5677764 77788888999999999999999999999999999999
Q ss_pred CCCC-cccCCCCCCCEEEcccCCCcccchhhhccCccCEEeccCCCCCCccCccccCCCCCCCEEEeeCCCccccccccc
Q 000518 570 LGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLN 648 (1448)
Q Consensus 570 i~~l-~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 648 (1448)
++.+ ..++.| -|+.|-+++|+++.+|..|+-+..|.+||.+.|. +..+|.. ++.+.+|+.|.+..|.+.
T Consensus 133 lS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~------- 202 (722)
T KOG0532|consen 133 LSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE------- 202 (722)
T ss_pred hhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh-------
Confidence 8877 555554 4889999999999999999988999999999887 8888888 899999999998888764
Q ss_pred cccCCcChhhcCCCCCCCEEEeecCCCcCCCccc
Q 000518 649 LERNNASLQELSILSHLTTLEIHIRDAVILPKGL 682 (1448)
Q Consensus 649 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 682 (1448)
..+.++..| .|..|++++|.+..+|-.+
T Consensus 203 -----~lp~El~~L-pLi~lDfScNkis~iPv~f 230 (722)
T KOG0532|consen 203 -----DLPEELCSL-PLIRLDFSCNKISYLPVDF 230 (722)
T ss_pred -----hCCHHHhCC-ceeeeecccCceeecchhh
Confidence 345666643 5788999999888877554
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.55 E-value=8.6e-09 Score=108.22 Aligned_cols=127 Identities=29% Similarity=0.373 Sum_probs=71.5
Q ss_pred CCccEEEcCCCCCCCCCCchhhcCCCCceEEEecCCcCcccCccCCCCCCCCEEeccCCCCCCC-cccCCCCCCCEEEcc
Q 000518 510 PHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI-AIIGNLKNLEILSLC 588 (1448)
Q Consensus 510 ~~L~~L~l~~n~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~Ls 588 (1448)
..|..+++++|.+ ..+..++ .-.+.+|+|++++|.+..+-. +..|++|+.|||++|.+..+ ..-.+|-|.+.|.|+
T Consensus 284 q~LtelDLS~N~I-~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLI-TQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccch-hhhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 4455566666554 2333332 335566666666666655533 56666666666666665554 222345556666666
Q ss_pred cCCCcccchhhhccCccCEEeccCCCCCCccCc-cccCCCCCCCEEEeeCCCcc
Q 000518 589 CSDIEQLPREIGELTQLKLLDLSNCSKLKVIPP-NVISSLSQLEELYLGNTSVE 641 (1448)
Q Consensus 589 ~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~ 641 (1448)
+|.|+.+ .++++|++|..||+++|+ +..+.. ..||+|+.|++|.+.+|.+.
T Consensus 361 ~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 361 QNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCcc
Confidence 6666655 356666666666666655 433321 11666666666666666554
No 46
>PRK06893 DNA replication initiation factor; Validated
Probab=98.51 E-value=9.2e-07 Score=97.14 Aligned_cols=153 Identities=16% Similarity=0.125 Sum_probs=94.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHcc
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1448)
..+.+.|+|+.|+|||+||+.+++....+ ...+.|+.+.... ... ..+.+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~~--------------------~~~~~~~~-- 90 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YFS--------------------PAVLENLE-- 90 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hhh--------------------HHHHhhcc--
Confidence 34678999999999999999999987533 3355677653210 000 01122221
Q ss_pred CcEEEEEcCCCCc---cchhh-ccCCCCCC-CCCcEEEEEeccc----------hhhhhcCcccceEEeecCChHHHHHH
Q 000518 239 KKILVILDDIWTS---LDLER-TGIPFGDV-HRGCKILVTSRRR----------DVLVSEMHCQNNYCVSVLNKEEAWSL 303 (1448)
Q Consensus 239 k~~LlVlDdv~~~---~~~~~-l~~~l~~~-~~gs~ilvTTR~~----------~v~~~~~~~~~~~~l~~L~~~e~~~L 303 (1448)
+.-+||+||+|.. .+|+. +...+... ..|..+||+|.+. .+..+ +.....++++++++++.+++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sR-l~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASR-LTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHH-HhcCCeeeCCCCCHHHHHHH
Confidence 3458999999874 34542 22222211 2355565554443 34342 44556889999999999999
Q ss_pred HHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHHH
Q 000518 304 FSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVAR 340 (1448)
Q Consensus 304 f~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~ 340 (1448)
+++.+.... -.-.+++..-|++++.|-.-++..+-.
T Consensus 170 L~~~a~~~~-l~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 170 LQRNAYQRG-IELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 998884222 122256778889999887665554433
No 47
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=4.2e-06 Score=102.22 Aligned_cols=181 Identities=13% Similarity=0.129 Sum_probs=116.6
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccC-------------------CcceEE
Q 000518 135 NEGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGR-------------------IFDEVV 194 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~-------------------~f~~~~ 194 (1448)
+..+..++|.+..++.|..++...++ ..+.++|+.|+||||+|+.+.+...-.. .|..++
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEE
Confidence 34567889999999999999886554 4668999999999999999998764211 111233
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCcc--chhhccCCCCCCCCCc
Q 000518 195 FAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGC 268 (1448)
Q Consensus 195 wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs 268 (1448)
+++...+..+.+ ++.+.+... .++.-++|||++.... .++.+...+.......
T Consensus 92 EIDAas~rgVDd---------------------IReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v 150 (830)
T PRK07003 92 EMDAASNRGVDE---------------------MAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHV 150 (830)
T ss_pred EecccccccHHH---------------------HHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCe
Confidence 333222222222 222222221 2456689999998763 4666666554444577
Q ss_pred EEEEEeccchhhhh-cCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChH-HHHH
Q 000518 269 KILVTSRRRDVLVS-EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI-AILT 337 (1448)
Q Consensus 269 ~ilvTTR~~~v~~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~ 337 (1448)
++|+||.+..-... .......++++.++.++..+.+.+.++.+...- ..+..+.|++.++|-.. |+..
T Consensus 151 ~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i-d~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 151 KFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF-EPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred EEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 77777765543321 233356799999999999999998886433222 24567889999988653 4444
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.47 E-value=1.4e-07 Score=114.29 Aligned_cols=175 Identities=28% Similarity=0.371 Sum_probs=123.5
Q ss_pred ccceEEEcccCCCCCCCCCCCCC--CccEEEcCCCCCCCCCCchhhcCCCCceEEEecCCcCcccCccCCCCCCCCEEec
Q 000518 488 KNCIAIFLHDINTGELPEGLEYP--HLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCL 565 (1448)
Q Consensus 488 ~~~r~lsl~~~~~~~lp~~~~~~--~L~~L~l~~n~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L 565 (1448)
..+..+.+.++.+..++...... +|+.|+++.|.+ ..+|.. ...++.|+.|++++|.+..+|...+.+.+|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccch-hhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 34677777777777777766443 788888887776 444433 36778888888888888888777767778888888
Q ss_pred cCCCCCCCcc-cCCCCCCCEEEcccCCCcccchhhhccCccCEEeccCCCCCCccCccccCCCCCCCEEEeeCCCccccc
Q 000518 566 DQCILGDIAI-IGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEF 644 (1448)
Q Consensus 566 ~~~~i~~l~~-i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~ 644 (1448)
++|.+..++. ++.+.+|++|.+++|.+...+..+.++.++..|.+.++. +..++.. ++.+.+|+.|++++|.+.
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n~i~--- 268 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNNQIS--- 268 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceecccccccc---
Confidence 8888777743 456666888888877666667777788888877776665 4444444 677777888888777664
Q ss_pred cccccccCCcChhhcCCCCCCCEEEeecCCCcCCC
Q 000518 645 EGLNLERNNASLQELSILSHLTTLEIHIRDAVILP 679 (1448)
Q Consensus 645 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 679 (1448)
.+..++.+.+|+.|+++++.....+
T Consensus 269 ----------~i~~~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 269 ----------SISSLGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred ----------ccccccccCccCEEeccCccccccc
Confidence 2233777778888888777655443
No 49
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.43 E-value=2.7e-06 Score=92.41 Aligned_cols=151 Identities=17% Similarity=0.232 Sum_probs=99.2
Q ss_pred CCccccccHHHHHHH---HHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHH
Q 000518 136 EGHEFIESRESILND---ILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIA 212 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~---l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 212 (1448)
+....+||.+..+-+ |..+++.+.++.+.+||++|+||||||+.+....+... +.||..|....-..-.++|.
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~if 210 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIF 210 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHH
Confidence 334456665554332 33445568899999999999999999999998876433 56788877655444445555
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEE--Eeccchhhh--hcCcc
Q 000518 213 DQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV--TSRRRDVLV--SEMHC 286 (1448)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv--TTR~~~v~~--~~~~~ 286 (1448)
++-.. ...+ ..+|.+|++|+|..- .+.+.| +|...+|.-++| ||.|+..-- .....
T Consensus 211 e~aq~--------------~~~l-~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSR 272 (554)
T KOG2028|consen 211 EQAQN--------------EKSL-TKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSR 272 (554)
T ss_pred HHHHH--------------HHhh-hcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhc
Confidence 43211 1112 258899999999542 333333 455667887777 677664321 12445
Q ss_pred cceEEeecCChHHHHHHHHHHh
Q 000518 287 QNNYCVSVLNKEEAWSLFSKVV 308 (1448)
Q Consensus 287 ~~~~~l~~L~~~e~~~Lf~~~~ 308 (1448)
..++.++.|..++...++.+.+
T Consensus 273 C~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 273 CRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred cceeEeccCCHHHHHHHHHHHH
Confidence 6789999999999999887744
No 50
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.40 E-value=3.9e-06 Score=99.29 Aligned_cols=197 Identities=14% Similarity=0.115 Sum_probs=113.0
Q ss_pred CccccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcc-eEEEEEecCCcCHHHHHHHHH---
Q 000518 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD-EVVFAEVSQTPDLKRIRREIA--- 212 (1448)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~--- 212 (1448)
....++|++..++.+..++.....+.+.++|+.|+||||+|+.+++.... ..++ ..+.++++.-.+. ....+.
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~~--~~~~~~~~~ 89 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFDQ--GKKYLVEDP 89 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhhc--chhhhhcCc
Confidence 35668899999999999988776667899999999999999999987652 2222 2344444321100 000000
Q ss_pred ---HHhCCC-CCCCChHHHHHHHHHHHHc-----cCcEEEEEcCCCCcc--chhhccCCCCCCCCCcEEEEEeccch-hh
Q 000518 213 ---DQLGLN-FCEESDSERIMMLCNRLKR-----EKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTSRRRD-VL 280 (1448)
Q Consensus 213 ---~~l~~~-~~~~~~~~~~~~l~~~l~~-----~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTTR~~~-v~ 280 (1448)
..++.. .......+..+.+.+.... +.+-+||+||+.... ....+...+......+++|+||.+.. +.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCc
Confidence 000000 0001112233333322221 345589999997652 23333333333334567887775432 22
Q ss_pred hhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000518 281 VSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1448)
Q Consensus 281 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 337 (1448)
.........+++.+++.++....+.+.+...... -..+..+.+++.++|.+-.+..
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 2112234578889999999999998876422211 2245678889999887655443
No 51
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=6.4e-06 Score=97.24 Aligned_cols=194 Identities=13% Similarity=0.137 Sum_probs=112.5
Q ss_pred CCccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000518 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 214 (1448)
.....++|.+..++.+...+...++ ..+.++|+.|+||||+|+.+++...-...+. ...+..-...+++...
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~ 85 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKG 85 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcC
Confidence 3456788999999999988876554 5679999999999999999998764111110 0000000111111111
Q ss_pred hCCCCC-----CCChHHHHHHHHHHHH----ccCcEEEEEcCCCCcc--chhhccCCCCCCCCCcEEEEEeccc-hhhhh
Q 000518 215 LGLNFC-----EESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTSRRR-DVLVS 282 (1448)
Q Consensus 215 l~~~~~-----~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~ 282 (1448)
...+.. .....+.++.+.+.+. .+++-++|+|++.... .++.+...+.......++|++|.+. .+...
T Consensus 86 ~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 86 LCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHH
Confidence 000000 0011222333333322 1456799999998763 4666655555444566677766543 33221
Q ss_pred cCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000518 283 EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1448)
Q Consensus 283 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 337 (1448)
.......+++.+++.++..+.+.+.+...... -.++.++.|++.++|-|..+..
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~-i~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESID-TDEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 12334688999999999999888876322111 1245577899999998864433
No 52
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=3e-06 Score=105.66 Aligned_cols=186 Identities=14% Similarity=0.176 Sum_probs=115.3
Q ss_pred CCccccccHHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccCC-------------------cceEEE
Q 000518 136 EGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRI-------------------FDEVVF 195 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~~~~~~~~~~~-------------------f~~~~w 195 (1448)
..+..++|.+..++.|..++...++. .+.++|+.|+||||+|+.+++...-... |.-+++
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 34667899999999999888866665 4589999999999999999987642111 111122
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEE
Q 000518 196 AEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVT 273 (1448)
Q Consensus 196 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvT 273 (1448)
++......+.++ ++|...+ ...-..+++-++|||++... ..++.+...+-......++|++
T Consensus 93 idAas~~kVDdI-ReLie~v----------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 93 VDAASRTKVDDT-RELLDNV----------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred eccccccCHHHH-HHHHHHH----------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 221111112211 2222211 11111367889999999765 4556555555433445555555
Q ss_pred e-ccchhhhhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHH
Q 000518 274 S-RRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVA 339 (1448)
Q Consensus 274 T-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 339 (1448)
| ....+..........+++++++.++....+.+.+..+... ...+..+.|++.++|.|..+..+.
T Consensus 156 TTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~-~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 156 TTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP-FEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred CCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4 4444443223335689999999999999998877432221 124567889999999886554443
No 53
>PF13173 AAA_14: AAA domain
Probab=98.36 E-value=6.4e-07 Score=88.69 Aligned_cols=120 Identities=19% Similarity=0.181 Sum_probs=81.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCc
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1448)
+++.|.|+.|+||||++++++++.. ....++++++.+.........+ ..+.+.+.. .+++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~~-~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD----------------LLEYFLELI-KPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh----------------hHHHHHHhh-ccCC
Confidence 6899999999999999999998775 2355677766554331111000 111222222 2477
Q ss_pred EEEEEcCCCCccchhhccCCCCCCCCCcEEEEEeccchhhhh-----cCcccceEEeecCChHHH
Q 000518 241 ILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVS-----EMHCQNNYCVSVLNKEEA 300 (1448)
Q Consensus 241 ~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~-----~~~~~~~~~l~~L~~~e~ 300 (1448)
.+|+||+|....+|......+.+..+..+|++|+.+...... ..+....++|.||+-.|.
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 889999999998888877666665567899999987766632 233445789999987763
No 54
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=8.4e-08 Score=106.90 Aligned_cols=213 Identities=18% Similarity=0.197 Sum_probs=145.2
Q ss_pred hcccceeeeecCcccccccccCCCccccccccEEEEecCCCCcccH--HHHhhcCCccEEEEEecceeEeecchhhhhhc
Q 000518 1070 VGSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPI--CFLQYFKNLEKLELRWSSYKQIFSYKEAEKHA 1147 (1448)
Q Consensus 1070 ~~~~L~~L~l~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~~~~~~--~~l~~l~~L~~L~i~c~~l~~~~~~~~~~~~~ 1147 (1448)
-+..|++..+.++.....+... ....|++++.|+++.|-+..+.. ...+.+|+|+.|+|+-|.+....+.. ..
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~-~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~----~~ 193 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEE-YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN----TT 193 (505)
T ss_pred hHHhhhheeecCccccccchhh-hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc----ch
Confidence 3567888888886666555421 22348899999999988655533 46688999999999977776554432 22
Q ss_pred cccccccEEEcCCCCCCchhhccCCcchhhhcccceeEEeccCCccccCCCCcccCcccEEEEecCCCCccccchhhhhc
Q 000518 1148 GKLTHIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVPSSPSFRNLITLEVWYCKGLKNLVTSSTAKS 1227 (1448)
Q Consensus 1148 ~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~l~sL~~L~i~~C~~L~~l~~~~~~l~sL~~L~I~~C~~L~~l~~~~~~~~ 1227 (1448)
..+++|+.|.+++|. |. |..-.+.+..+|+|+.|.+.....+.........+..|++|++++ +++.+.........
T Consensus 194 ~~l~~lK~L~l~~CG-ls--~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~-N~li~~~~~~~~~~ 269 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCG-LS--WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN-NNLIDFDQGYKVGT 269 (505)
T ss_pred hhhhhhheEEeccCC-CC--HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC-Cccccccccccccc
Confidence 378999999999994 32 333345567789999999988764433222234567899999998 56666665666778
Q ss_pred cccccEEEEecccccchhccccCcccccccccccccccccccccccceecCCcccccCCCcceEEe
Q 000518 1228 LVQLMQLRIDGCKMITEIISNEGDVAEDEIVFSKLKWLSLENLESLTSFYSGNYTFKFPCLEDLFV 1293 (1448)
Q Consensus 1228 l~~L~~L~I~~C~~l~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I 1293 (1448)
++.|..|.++.|. +.++-.-+.+..+....|++|+.|.+..- ++..++.-+....+++|+.|.+
T Consensus 270 l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 270 LPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred ccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhc
Confidence 8999999999885 55554444444445667899999988764 3444443333445566666654
No 55
>PTZ00202 tuzin; Provisional
Probab=98.33 E-value=2.6e-05 Score=88.71 Aligned_cols=165 Identities=15% Similarity=0.209 Sum_probs=103.6
Q ss_pred cCCCccccccHHHHHHHHHHHHcC---CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHH
Q 000518 134 YNEGHEFIESRESILNDILDALRG---PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1448)
Q Consensus 134 ~~~~~~~~~gR~~~~~~l~~~L~~---~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 210 (1448)
.|.+...|+||++++.++...|.+ ...+++.|.|++|+|||||++.+..... + ...+++.. +..++++.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHH
Confidence 345677899999999999999863 2346999999999999999999996553 1 12222222 67999999
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHH----c-cCcEEEEEcC--CCCccc-hhhccCCCCCCCCCcEEEEEeccchhhhh
Q 000518 211 IADQLGLNFCEESDSERIMMLCNRLK----R-EKKILVILDD--IWTSLD-LERTGIPFGDVHRGCKILVTSRRRDVLVS 282 (1448)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~----~-~k~~LlVlDd--v~~~~~-~~~l~~~l~~~~~gs~ilvTTR~~~v~~~ 282 (1448)
|+..|+.... ....+..+.+.+.+. . +++.+||+-= -.+... +.+ ...+.....-|.|++----+.+...
T Consensus 329 LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne-~v~la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 329 VVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNE-VVALACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHH-HHHHHccchhheeeeeehHhhcchh
Confidence 9999997422 222333343333332 2 6777777642 222111 111 0122233455677775443332221
Q ss_pred --cCcccceEEeecCChHHHHHHHHHHh
Q 000518 283 --EMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1448)
Q Consensus 283 --~~~~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1448)
....-..|.+++++.++|.++-.+..
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhcc
Confidence 23344578899999999999887754
No 56
>PLN03025 replication factor C subunit; Provisional
Probab=98.33 E-value=6.3e-06 Score=95.78 Aligned_cols=183 Identities=14% Similarity=0.045 Sum_probs=108.3
Q ss_pred CCccccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcc-eEEEEEecCCcCHHHHHHHHHHH
Q 000518 136 EGHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD-EVVFAEVSQTPDLKRIRREIADQ 214 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~ 214 (1448)
.....++|.+..++.|.+++.....+.+.++|++|+||||+|+.+++...- ..|. .++-++.+...... ..+++++.
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~eln~sd~~~~~-~vr~~i~~ 87 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG-PNYKEAVLELNASDDRGID-VVRNKIKM 87 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc-ccCccceeeecccccccHH-HHHHHHHH
Confidence 345677898888888888887767777889999999999999999988642 2232 22222233322222 22222221
Q ss_pred hCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCcc--chhhccCCCCCCCCCcEEEEEeccc-hhhhhcCcccceEE
Q 000518 215 LGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMHCQNNYC 291 (1448)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~~~~~~~~~~ 291 (1448)
+..... .+..++.-++|+|+++... ....+...+......+++|+++... .+..........++
T Consensus 88 ~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 88 FAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred HHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 110000 0011456799999998762 2333333332223456777766433 22221112245789
Q ss_pred eecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHH
Q 000518 292 VSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1448)
Q Consensus 292 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 334 (1448)
++++++++....+...+..+...-. .+....|++.++|-...
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i~-~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPYV-PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHH
Confidence 9999999999999888743222111 45577889999886643
No 57
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=5.7e-06 Score=99.83 Aligned_cols=201 Identities=14% Similarity=0.123 Sum_probs=116.0
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000518 135 NEGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 213 (1448)
+..+..++|.+..++.|..++...++ ..+.++|+.|+||||+|+.+++...-... +..--+. +..+..-...+.|..
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~~-~~PCG~C~sC~~I~a 89 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGIT-AQPCGQCRACTEIDA 89 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccCC-CCCCcccHHHHHHHc
Confidence 34566789999999999999886655 46789999999999999999987641100 0000000 000000111111110
Q ss_pred Hh-----CCCCCCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcE-EEEEeccchhhh
Q 000518 214 QL-----GLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCK-ILVTSRRRDVLV 281 (1448)
Q Consensus 214 ~l-----~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~-ilvTTR~~~v~~ 281 (1448)
.- ..+.......+.++.+.+.+. .++.-++|||++... ..++.+...+.....+++ |++||....+..
T Consensus 90 G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 00 000000111222333333322 356779999999876 356666655544334555 445555555543
Q ss_pred hcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000518 282 SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1448)
Q Consensus 282 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 338 (1448)
........++++.++.++..+.+.+.++.+....+ .+..+.|++.++|.|.....+
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d-~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE-VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 22334568999999999999999888754322222 345678999999998654433
No 58
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.32 E-value=5.7e-05 Score=94.74 Aligned_cols=172 Identities=18% Similarity=0.158 Sum_probs=103.4
Q ss_pred CccccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCc---ceEEEEEecCC---cCHHHHHHH
Q 000518 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF---DEVVFAEVSQT---PDLKRIRRE 210 (1448)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f---~~~~wv~v~~~---~~~~~~~~~ 210 (1448)
....++|++..+..+.+.+.......+.|+|++|+||||+|+.+++..+....+ ...-|+.+... .+...+...
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 445678998888888877765556689999999999999999999877533333 12335544321 122222111
Q ss_pred H---------------HHHhCCC------------------CCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc--cchh
Q 000518 211 I---------------ADQLGLN------------------FCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLE 255 (1448)
Q Consensus 211 i---------------~~~l~~~------------------~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~ 255 (1448)
+ +...+.. ..+.-+......+.+.+. ++++.++-|+.|.. ..|+
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCcccch
Confidence 1 1111110 011112334455555554 57788887666654 3577
Q ss_pred hccCCCCCCCCCcEEEE--Eeccchhhhhc-CcccceEEeecCChHHHHHHHHHHhC
Q 000518 256 RTGIPFGDVHRGCKILV--TSRRRDVLVSE-MHCQNNYCVSVLNKEEAWSLFSKVVG 309 (1448)
Q Consensus 256 ~l~~~l~~~~~gs~ilv--TTR~~~v~~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~ 309 (1448)
.+...+....+...|+| ||++....... ......+.+.+++.+|.+.++++.+.
T Consensus 311 ~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 311 YIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred hhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 77666665555555555 56654322211 12234678899999999999998775
No 59
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.32 E-value=3.6e-06 Score=93.18 Aligned_cols=170 Identities=14% Similarity=0.136 Sum_probs=102.5
Q ss_pred cHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC
Q 000518 143 SRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE 222 (1448)
Q Consensus 143 gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~ 222 (1448)
+.+..++.+.+++.....+.+.|+|+.|+|||++|+.+++.... .....++++++.-.+. .
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~--~~~~~~~i~~~~~~~~------~----------- 81 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE--RGKSAIYLPLAELAQA------D----------- 81 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEeHHHHHHh------H-----------
Confidence 34566777777765556678999999999999999999988752 2334556654432210 0
Q ss_pred ChHHHHHHHHHHHHccCcEEEEEcCCCCcc---chh-hccCCCCC-CCCCcEEEEEeccchhhh-----h---cCcccce
Q 000518 223 SDSERIMMLCNRLKREKKILVILDDIWTSL---DLE-RTGIPFGD-VHRGCKILVTSRRRDVLV-----S---EMHCQNN 289 (1448)
Q Consensus 223 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~-~l~~~l~~-~~~gs~ilvTTR~~~v~~-----~---~~~~~~~ 289 (1448)
..+...+ .+.-+||+||++... .|. .+...+.. ...+.++|+||+...... . .......
T Consensus 82 ------~~~~~~~--~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~ 153 (226)
T TIGR03420 82 ------PEVLEGL--EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLV 153 (226)
T ss_pred ------HHHHhhc--ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCee
Confidence 0111112 133489999997653 232 23222221 123447888887543110 0 1222457
Q ss_pred EEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHHH
Q 000518 290 YCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVAR 340 (1448)
Q Consensus 290 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~ 340 (1448)
++++++++++-..+++.++..... .-..++.+.|++.++|.|..+.-+..
T Consensus 154 i~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 154 FQLPPLSDEEKIAALQSRAARRGL-QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred EecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 899999999999999876531111 12245567788888888876665543
No 60
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=7.6e-06 Score=99.07 Aligned_cols=195 Identities=11% Similarity=0.122 Sum_probs=113.9
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000518 135 NEGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 213 (1448)
|.....++|.+.....|..++...++ ..+.++|+.|+||||+|+.+++..--.. |+.. ..+..-...+.|..
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~~ 83 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVNE 83 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHhc
Confidence 34567889999999999999886554 5789999999999999999998763111 1000 00011111111111
Q ss_pred HhCCCC-----CCCChHHHHHHHHHHH----HccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEeccc-hhhh
Q 000518 214 QLGLNF-----CEESDSERIMMLCNRL----KREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLV 281 (1448)
Q Consensus 214 ~l~~~~-----~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~ 281 (1448)
.-..+. ......+.++.+.... ..+++-++|+|+|... ...+.+...+.....+.++|++|.+. .+..
T Consensus 84 g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~ 163 (702)
T PRK14960 84 GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI 163 (702)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhH
Confidence 000000 0001122222232222 1256779999999865 34555554444334566777766543 2322
Q ss_pred hcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000518 282 SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1448)
Q Consensus 282 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 337 (1448)
........+++.+++.++....+.+.+......-+ .+....|++.++|-+..+..
T Consensus 164 TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id-~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD-QDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 12344568999999999999999887743322222 45577899999997754443
No 61
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.2e-05 Score=97.78 Aligned_cols=191 Identities=13% Similarity=0.065 Sum_probs=112.9
Q ss_pred CCccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000518 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 214 (1448)
.....++|.+..++.|..++..... ..+.++|+.|+||||+|+.+++...-...+....|.|.+. +.+...
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc--------~~i~~~ 82 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC--------LAVRRG 82 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh--------HHHhcC
Confidence 3456788999999999888876655 4669999999999999999998875322222122222110 000000
Q ss_pred hCCC-----CCCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEec-cchhhhh
Q 000518 215 LGLN-----FCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSR-RRDVLVS 282 (1448)
Q Consensus 215 l~~~-----~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR-~~~v~~~ 282 (1448)
...+ .......+.++.+.+.+. .+++-++|+|+++.. ..++.+...+......+.+|++|. ...+...
T Consensus 83 ~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~ 162 (504)
T PRK14963 83 AHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPT 162 (504)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChH
Confidence 0000 000111222233332222 146779999999765 346666555544444555555554 3333321
Q ss_pred cCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHH
Q 000518 283 EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1448)
Q Consensus 283 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 335 (1448)
.......+++.+++.++....+.+.+....... ..+....|++.++|.+.-+
T Consensus 163 I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLADGAMRDA 214 (504)
T ss_pred HhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 123356899999999999999998874222111 2456788999999988644
No 62
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.30 E-value=1.8e-06 Score=86.22 Aligned_cols=116 Identities=22% Similarity=0.330 Sum_probs=80.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc---CCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC-CChHHHHHHHHHH
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEG---RIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE-ESDSERIMMLCNR 234 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~ 234 (1448)
+-+++.|+|.+|+|||+++++++++.... ..-..++|+.+....+...+...|+..++..... .+.......+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34689999999999999999999987421 0134567999988889999999999999987665 4555666777777
Q ss_pred HHccCcEEEEEcCCCCc-c--chhhccCCCCCCCCCcEEEEEecc
Q 000518 235 LKREKKILVILDDIWTS-L--DLERTGIPFGDVHRGCKILVTSRR 276 (1448)
Q Consensus 235 l~~~k~~LlVlDdv~~~-~--~~~~l~~~l~~~~~gs~ilvTTR~ 276 (1448)
+.+.+..+||+||++.. . .++.+..... ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 77666679999999765 2 2333322222 567778777654
No 63
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.30 E-value=6e-06 Score=86.38 Aligned_cols=176 Identities=16% Similarity=0.127 Sum_probs=92.8
Q ss_pred CCCccccccHHHHHHHHHHHHc-----CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHH
Q 000518 135 NEGHEFIESRESILNDILDALR-----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 209 (1448)
|.....|+|.+..++.+.-++. ++...-+.+|||+|+||||||.-+++.... .|. +++.+.-....++ .
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~--~~~---~~sg~~i~k~~dl-~ 93 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGV--NFK---ITSGPAIEKAGDL-A 93 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EE---EEECCC--SCHHH-H
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCC--CeE---eccchhhhhHHHH-H
Confidence 4567789999988887654443 345778999999999999999999998763 232 2222111111221 1
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCcc--c-------hhhccCC-CCCCCC-----------Cc
Q 000518 210 EIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL--D-------LERTGIP-FGDVHR-----------GC 268 (1448)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~-------~~~l~~~-l~~~~~-----------gs 268 (1448)
.++. .+ +++-+|++|++.... + .++.... ....++ =+
T Consensus 94 ~il~--------------------~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 94 AILT--------------------NL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp HHHH--------------------T----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred HHHH--------------------hc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 1222 12 245566777775431 1 1111100 001111 12
Q ss_pred EEEEEeccchhhhhcCcc--cceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHHH
Q 000518 269 KILVTSRRRDVLVSEMHC--QNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVAR 340 (1448)
Q Consensus 269 ~ilvTTR~~~v~~~~~~~--~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~ 340 (1448)
-|=.|||.-.+... ... ....+++..+.+|-.++..+.++--. -.-.++.+.+|++++.|-|.-..-+-.
T Consensus 152 ligATTr~g~ls~p-LrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~-i~i~~~~~~~Ia~rsrGtPRiAnrll~ 223 (233)
T PF05496_consen 152 LIGATTRAGLLSSP-LRDRFGIVLRLEFYSEEELAKIVKRSARILN-IEIDEDAAEEIARRSRGTPRIANRLLR 223 (233)
T ss_dssp EEEEESSGCCTSHC-CCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHHHH
T ss_pred Eeeeeccccccchh-HHhhcceecchhcCCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 34458887666553 332 23458999999999999987764221 222357799999999999975444333
No 64
>PRK04195 replication factor C large subunit; Provisional
Probab=98.29 E-value=3.5e-05 Score=94.83 Aligned_cols=184 Identities=12% Similarity=0.103 Sum_probs=110.8
Q ss_pred CCccccccHHHHHHHHHHHHcC----CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHH
Q 000518 136 EGHEFIESRESILNDILDALRG----PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 211 (1448)
.....++|+++.++++.+|+.. ...+.+.|+|++|+||||+|+.++++.. |+ ++-++.+...+.. .+..+
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~~~ 84 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIERV 84 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHHHH
Confidence 3466788999999999998862 2367899999999999999999999863 33 2333444433322 22222
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCccc------hhhccCCCCCCCCCcEEEEEeccch-hhh-hc
Q 000518 212 ADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD------LERTGIPFGDVHRGCKILVTSRRRD-VLV-SE 283 (1448)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------~~~l~~~l~~~~~gs~ilvTTR~~~-v~~-~~ 283 (1448)
+...... ..+...++.+||+|+++.... +..+...+. ..+..||+|+.+.. +.. ..
T Consensus 85 i~~~~~~--------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 85 AGEAATS--------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHhhcc--------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhH
Confidence 2221110 001112678999999976521 333333222 12344666654332 111 11
Q ss_pred CcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHHHHh
Q 000518 284 MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTL 342 (1448)
Q Consensus 284 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 342 (1448)
......+++.+++.++....+.+.+......- ..++...|++.++|-...+......+
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i-~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIEC-DDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 22346789999999999999888774222111 14567899999999776655444433
No 65
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=1.5e-05 Score=96.39 Aligned_cols=196 Identities=11% Similarity=0.100 Sum_probs=113.5
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcce-EEEEEecCCcCHHHHHHHHH
Q 000518 135 NEGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDE-VVFAEVSQTPDLKRIRREIA 212 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~i~ 212 (1448)
|.....++|.+..+..|...+...++ +.+.++|+.|+||||+|+.+++..--...... -.+..+ ..-.....|.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C----~~C~~C~~i~ 92 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC----EQCTNCISFN 92 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC----CCChHHHHHh
Confidence 34466788999988888887765554 58899999999999999999987642111100 000000 0001111111
Q ss_pred HHhCCCC-----CCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEE-Eeccchhh
Q 000518 213 DQLGLNF-----CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-TSRRRDVL 280 (1448)
Q Consensus 213 ~~l~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TTR~~~v~ 280 (1448)
.....+. ......+.++.+.+... .+++-++|+|+++.. ..++.+...+......+++|+ ||+...+.
T Consensus 93 ~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 93 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred cCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 1000000 00111222233332222 257789999999875 457766665554445666554 55555554
Q ss_pred hhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHH
Q 000518 281 VSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1448)
Q Consensus 281 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 335 (1448)
.........+++.+++.++....+.+.+..+...- ..+....|++.++|-+.-+
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i-e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT-DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 42223345789999999999999998885332221 1355678999999977443
No 66
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=5.2e-05 Score=88.28 Aligned_cols=196 Identities=25% Similarity=0.281 Sum_probs=125.9
Q ss_pred cccHHHHHHHHHHHHc----CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhC
Q 000518 141 IESRESILNDILDALR----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLG 216 (1448)
Q Consensus 141 ~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 216 (1448)
+.+|+++++++...|. +....-+.|+|..|+|||+.++.+.+..+....=..+++|++....+..+++..|++.++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 7899999999998876 333334999999999999999999999874322222789999999999999999999996
Q ss_pred C-CCCCCChHHHHHHHHHHHHc-cCcEEEEEcCCCCccch-----hhccCCCCCCCCCcEEEE--Eeccchhhhh-----
Q 000518 217 L-NFCEESDSERIMMLCNRLKR-EKKILVILDDIWTSLDL-----ERTGIPFGDVHRGCKILV--TSRRRDVLVS----- 282 (1448)
Q Consensus 217 ~-~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~-----~~l~~~l~~~~~gs~ilv--TTR~~~v~~~----- 282 (1448)
. ........+....+.+.+.. ++.++||||+++....- -.+...-... .++|++ .+-+......
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv 176 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRV 176 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhh
Confidence 2 22334555666667777664 68899999999765321 1222211111 444433 3333322221
Q ss_pred --cCcccceEEeecCChHHHHHHHHHHhC----CCC-CCccHHHHHHHHHHHhCCChHHHHHHH
Q 000518 283 --EMHCQNNYCVSVLNKEEAWSLFSKVVG----NCV-EDPDLQTVAIQVANECGGLPIAILTVA 339 (1448)
Q Consensus 283 --~~~~~~~~~l~~L~~~e~~~Lf~~~~~----~~~-~~~~~~~~~~~i~~~~~glPlai~~~~ 339 (1448)
..+. ..+..+|-+.+|-.+.+..++. ... ++..++-++...+...|-.=.||.++-
T Consensus 177 ~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 177 KSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 1222 3488999999999999999882 222 233333334333444434445554443
No 67
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=6.7e-06 Score=97.01 Aligned_cols=192 Identities=12% Similarity=0.079 Sum_probs=114.7
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000518 135 NEGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 213 (1448)
|..+..++|.+..+..|..++...++. .+.++|+.|+||||+|+.+++...-...... ..+....+ .+.|..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~s----C~~i~~ 86 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTS----CLEITK 86 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcH----HHHHHc
Confidence 345667899999999999888876654 6899999999999999999987642111000 00111111 112222
Q ss_pred HhCCCCC-----CCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEE-EEeccchhhh
Q 000518 214 QLGLNFC-----EESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKIL-VTSRRRDVLV 281 (1448)
Q Consensus 214 ~l~~~~~-----~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il-vTTR~~~v~~ 281 (1448)
....+.. .....+.+..+.+.+. .++.-++|+|++... ..++.+...+........+| .||....+..
T Consensus 87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~ 166 (484)
T PRK14956 87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPE 166 (484)
T ss_pred cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccH
Confidence 1111110 0111223333333332 356779999999865 45666655554333344444 4555455443
Q ss_pred hcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHH
Q 000518 282 SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1448)
Q Consensus 282 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 334 (1448)
........+.+.+++.++..+.+.+.+..+.... ..+....|++.++|-+.-
T Consensus 167 TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~-e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 167 TILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY-DQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCChHHH
Confidence 2233345799999999999999888774322221 245678899999998854
No 68
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=1.6e-05 Score=92.22 Aligned_cols=176 Identities=18% Similarity=0.187 Sum_probs=116.1
Q ss_pred cccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHh----ccCCcceEEEEEe-cCCcCHHHHHHHHH
Q 000518 139 EFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAK----EGRIFDEVVFAEV-SQTPDLKRIRREIA 212 (1448)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~----~~~~f~~~~wv~v-~~~~~~~~~~~~i~ 212 (1448)
..++|.+..++.+..++..+.. +...++|+.|+||||+|+.+++..- ...|+|...|... +....++++ +++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 4577888889999999876554 5778999999999999999998752 2346676666542 233344442 2333
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCC--CccchhhccCCCCCCCCCcEEEEEeccchhhhh-cCcccce
Q 000518 213 DQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIW--TSLDLERTGIPFGDVHRGCKILVTSRRRDVLVS-EMHCQNN 289 (1448)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~-~~~~~~~ 289 (1448)
+.+.... . .+++-++|+|+++ +...++.+...+.....++.+|++|.+....-. .......
T Consensus 83 ~~~~~~p---------------~-~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 83 EEVNKKP---------------Y-EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHhcCc---------------c-cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 3332110 0 1455666677654 446788888777766778888888876543211 1223468
Q ss_pred EEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHH
Q 000518 290 YCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1448)
Q Consensus 290 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 336 (1448)
+++.++++++....+.+.... . ..+.++.++..++|.|..+.
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~-~----~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYND-I----KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcC-C----CHHHHHHHHHHcCCCHHHHH
Confidence 899999999998888765431 1 13346788999999986554
No 69
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.26 E-value=8e-07 Score=107.63 Aligned_cols=167 Identities=32% Similarity=0.390 Sum_probs=121.4
Q ss_pred CCCCccEEEcCCCCCCCCCCchhhcCCC-CceEEEecCCcCcccCccCCCCCCCCEEeccCCCCCCCcc-cCCCCCCCEE
Q 000518 508 EYPHLTSLCMNPKDPFLHIPDNFFAGMP-KLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAI-IGNLKNLEIL 585 (1448)
Q Consensus 508 ~~~~L~~L~l~~n~~~~~~~~~~f~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~-i~~L~~L~~L 585 (1448)
..+.++.|++.+|.+ ..++... ..+. +|+.|++++|.+..+|..+..+++|+.|++++|.+..++. .+.+.+|+.|
T Consensus 114 ~~~~l~~L~l~~n~i-~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNI-TDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCccc-ccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 556788888888776 4555532 3443 7888888888888888778888888888888888887744 4488888888
Q ss_pred EcccCCCcccchhhhccCccCEEeccCCCCCCccCccccCCCCCCCEEEeeCCCccccccccccccCCcChhhcCCCCCC
Q 000518 586 SLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHL 665 (1448)
Q Consensus 586 ~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 665 (1448)
++++|.+..+|..++.+..|++|.+++|. ....+.. +.++.++..|.+.++.+. ..+..++.+.+|
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~------------~~~~~~~~l~~l 257 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE------------DLPESIGNLSNL 257 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee------------eccchhcccccc
Confidence 88888888888877777788888888875 3344444 677778877776666543 114677788889
Q ss_pred CEEEeecCCCcCCCcccccccccce
Q 000518 666 TTLEIHIRDAVILPKGLFSQKLARY 690 (1448)
Q Consensus 666 ~~L~l~~~~~~~~~~~~~~~~L~~l 690 (1448)
+.|+++.+.+..++.......+..+
T Consensus 258 ~~L~~s~n~i~~i~~~~~~~~l~~L 282 (394)
T COG4886 258 ETLDLSNNQISSISSLGSLTNLREL 282 (394)
T ss_pred ceeccccccccccccccccCccCEE
Confidence 9999999988877663233333333
No 70
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.6e-05 Score=95.78 Aligned_cols=189 Identities=15% Similarity=0.143 Sum_probs=110.2
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCC-------------------cceEE
Q 000518 135 NEGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRI-------------------FDEVV 194 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~~-------------------f~~~~ 194 (1448)
|.....++|.+.....|...+....+ ..+.++|++|+||||+|+.+++...-... +..++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 33466789998888888887776665 46899999999999999999987542110 01122
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEE
Q 000518 195 FAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV 272 (1448)
Q Consensus 195 wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv 272 (1448)
.++.+....+.++ ++|...... .-..+++-++|+|++... ...+.+...+........+|+
T Consensus 90 el~aa~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Il 152 (472)
T PRK14962 90 ELDAASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVL 152 (472)
T ss_pred EEeCcccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 2232222222222 122221110 001246779999999754 334444444433333444444
Q ss_pred Eecc-chhhhhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCC-ChHHHHHHHHH
Q 000518 273 TSRR-RDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGG-LPIAILTVART 341 (1448)
Q Consensus 273 TTR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~~~~~~ 341 (1448)
+|.+ ..+..........+++.+++.++....+.+.+...... -..++...|++.++| ++.|+..+-.+
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~-i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE-IDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4433 33333223344688999999999999988877322111 124567788887765 46666666543
No 71
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.25 E-value=2.1e-05 Score=92.22 Aligned_cols=184 Identities=13% Similarity=0.067 Sum_probs=109.0
Q ss_pred CCccccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEe--cCCcCHHHHHHHHHH
Q 000518 136 EGHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV--SQTPDLKRIRREIAD 213 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v--~~~~~~~~~~~~i~~ 213 (1448)
.....++|+++.++.+..++.....+.+.|+|+.|+||||+|+.+++..... .+.. .++.+ +....... .++.+.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~-~~~~-~~i~~~~~~~~~~~~-~~~~i~ 90 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGE-DWRE-NFLELNASDERGIDV-IRNKIK 90 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC-cccc-ceEEeccccccchHH-HHHHHH
Confidence 3455688999999999999887666778999999999999999999886422 1221 12222 22222211 111111
Q ss_pred HhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCcc--chhhccCCCCCCCCCcEEEEEeccc-hhhhhcCcccceE
Q 000518 214 QLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMHCQNNY 290 (1448)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~~~~~~~~~ 290 (1448)
.+....+ .....+-+||+|+++... ....+...+......+++|+++... .+..........+
T Consensus 91 ~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 91 EFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred HHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhee
Confidence 1110000 001245689999987542 2334433333333456677766432 2222111234478
Q ss_pred EeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000518 291 CVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1448)
Q Consensus 291 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 337 (1448)
++.++++++....+.+++...... -..+....+++.++|-+..+..
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~~~-i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEGIE-ITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999988887432211 1245677889999998765433
No 72
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.5e-05 Score=96.81 Aligned_cols=185 Identities=13% Similarity=0.148 Sum_probs=111.5
Q ss_pred CCccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhcc-------------------CCcceEEE
Q 000518 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEG-------------------RIFDEVVF 195 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~-------------------~~f~~~~w 195 (1448)
..+..++|.+..++.|...+...++ ..+.++|+.|+||||+|+.+++...-. ..|..+++
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 3466788999999999988876554 467899999999999999999865311 01222333
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEE-
Q 000518 196 AEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV- 272 (1448)
Q Consensus 196 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv- 272 (1448)
+.......+.++ ++|+..+ ...-..+++-++|+|++... ..++.+...+......+++|+
T Consensus 93 idaas~~gvd~i-r~ii~~~----------------~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 93 IDAASRTGVEET-KEILDNI----------------QYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred eecccccCHHHH-HHHHHHH----------------HhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 332222222221 1222111 11111257779999999765 345556555544444555554
Q ss_pred EeccchhhhhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChH-HHHHH
Q 000518 273 TSRRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI-AILTV 338 (1448)
Q Consensus 273 TTR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~ 338 (1448)
||....+..........+++.+++.++....+.+.+...... ...+....|++.++|-+. |+..+
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~-~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN-SDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 554444432223335689999999999888888766322211 124456788999999664 44444
No 73
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.24 E-value=7.1e-06 Score=83.94 Aligned_cols=122 Identities=18% Similarity=0.191 Sum_probs=74.1
Q ss_pred cHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC
Q 000518 143 SRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE 222 (1448)
Q Consensus 143 gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~ 222 (1448)
||+..++++...+.....+.+.|+|++|+|||++|+++++.... .-..++++...+..........+...
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~-------- 71 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR--PGAPFLYLNASDLLEGLVVAELFGHF-------- 71 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc--CCCCeEEEehhhhhhhhHHHHHhhhh--------
Confidence 67888899988887666678999999999999999999998752 22456666665544322222111100
Q ss_pred ChHHHHHHHHHHHHccCcEEEEEcCCCCc-----cchhhccCCCCC---CCCCcEEEEEeccch
Q 000518 223 SDSERIMMLCNRLKREKKILVILDDIWTS-----LDLERTGIPFGD---VHRGCKILVTSRRRD 278 (1448)
Q Consensus 223 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~-----~~~~~l~~~l~~---~~~gs~ilvTTR~~~ 278 (1448)
............++.+||+||++.. ..+..+...+.. ...+..||+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0000111111257889999999853 122222222211 136788888887654
No 74
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.18 E-value=3.6e-06 Score=96.79 Aligned_cols=158 Identities=15% Similarity=0.169 Sum_probs=77.5
Q ss_pred ccccEEEEecCCCCcccHHHHhhcCCccEEEEE-ecceeEeecchhhhhhccccccccEEEcCCCCCCchhhccCCcchh
Q 000518 1098 QNLKILEVVNDKSDNFPICFLQYFKNLEKLELR-WSSYKQIFSYKEAEKHAGKLTHIKSLKLWELSDLMYLWNQGFKLDS 1176 (1448)
Q Consensus 1098 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~-c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~ 1176 (1448)
.+++.|+|++|.++.+|. + .++|++|.|+ |+.++.++. ..+++|++|.|++|.++..++
T Consensus 52 ~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~--------~LP~nLe~L~Ls~Cs~L~sLP-------- 111 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPG--------SIPEGLEKLTVCHCPEISGLP-------- 111 (426)
T ss_pred cCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCc--------hhhhhhhheEccCcccccccc--------
Confidence 445555555555555551 1 1356666666 666655543 124567777777776666552
Q ss_pred hhcccceeEEec--cCCccccCCCCcccCcccEEEEecCCCCccccchhhhhccccccEEEEecccccchhccccCcccc
Q 000518 1177 VVENLEMLEVWW--CDNLVNLVPSSPSFRNLITLEVWYCKGLKNLVTSSTAKSLVQLMQLRIDGCKMITEIISNEGDVAE 1254 (1448)
Q Consensus 1177 ~l~sL~~L~i~~--C~~L~~l~~~~~~l~sL~~L~I~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~l~~~~~~~~~~~~ 1254 (1448)
.+|+.|.+.+ |..+..+| ++|+.|.+.++.......... .-.++|+.|.|++|..+. +|.
T Consensus 112 --~sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~-LP~------- 173 (426)
T PRK15386 112 --ESVRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII-LPE------- 173 (426)
T ss_pred --cccceEEeCCCCCcccccCc------chHhheecccccccccccccc--ccCCcccEEEecCCCccc-Ccc-------
Confidence 2355555542 23333333 346666664432211110000 111567777777776442 221
Q ss_pred cccccccccccccccccccce--ecCCcccccCCCcceEEeccCCccc
Q 000518 1255 DEIVFSKLKWLSLENLESLTS--FYSGNYTFKFPCLEDLFVIECPNMK 1300 (1448)
Q Consensus 1255 ~~~~~~sL~~L~l~~c~~L~~--l~~~~~~~~~~sL~~L~I~~Cp~l~ 1300 (1448)
..+.+|+.|.+..+. .++ ++....+ +++ .|.+.+|.++.
T Consensus 174 --~LP~SLk~L~ls~n~-~~sLeI~~~sLP---~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 174 --KLPESLQSITLHIEQ-KTTWNISFEGFP---DGL-DIDLQNSVLLS 214 (426)
T ss_pred --cccccCcEEEecccc-cccccCcccccc---ccc-EechhhhcccC
Confidence 134577777776532 111 2222222 345 67777775543
No 75
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=3.1e-05 Score=95.45 Aligned_cols=197 Identities=11% Similarity=0.122 Sum_probs=114.0
Q ss_pred CCccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCc--ceEEEEEecCCcCHHHHHHHHH
Q 000518 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIF--DEVVFAEVSQTPDLKRIRREIA 212 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f--~~~~wv~v~~~~~~~~~~~~i~ 212 (1448)
..+..++|.+..+..|..++...++ ..+.++|+.|+||||+|+.+++..--.... ..... ..+..-...+.|.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~ 88 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDID 88 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHH
Confidence 4566788999989999998886665 567999999999999999998765311100 00000 0111111222221
Q ss_pred HHhCCCC-----CCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEe-ccchhh
Q 000518 213 DQLGLNF-----CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS-RRRDVL 280 (1448)
Q Consensus 213 ~~l~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTT-R~~~v~ 280 (1448)
..-..+. ......+.++.+.+... .++.-++|||+|... ..++.+...+......+++|++| ....+.
T Consensus 89 ~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 89 SGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred cCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhh
Confidence 1000000 00111222333333322 245668999999876 45666665555444555665554 444443
Q ss_pred hhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000518 281 VSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1448)
Q Consensus 281 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 337 (1448)
.........+++++++.++....+.+.+......-+ .+..+.|++.++|-+.-+..
T Consensus 169 ~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie-~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 169 VTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE-PQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 322334568999999999999999887743322221 45577889999987754433
No 76
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=2.7e-05 Score=93.22 Aligned_cols=181 Identities=10% Similarity=0.112 Sum_probs=112.5
Q ss_pred CCccccccHHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhcc-------------------CCcceEEE
Q 000518 136 EGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEG-------------------RIFDEVVF 195 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~~~~~~~~~-------------------~~f~~~~w 195 (1448)
..+..++|.+..++.|...+..+++. .+.++|+.|+||||+|+.+++...-. ..+.-++.
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 34667889999888888888766655 89999999999999999998754210 11112333
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEE
Q 000518 196 AEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVT 273 (1448)
Q Consensus 196 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvT 273 (1448)
++.+....+.++. +|.+...-. -+ .+++-++|+|++... ...+.+...+....+.+++|++
T Consensus 90 idaas~~~vddIR-~Iie~~~~~---------------P~-~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 90 IDAASNTSVDDIK-VILENSCYL---------------PI-SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred EecccCCCHHHHH-HHHHHHHhc---------------cc-cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 4443333333322 222211100 00 146778999999765 3455555555444456666665
Q ss_pred e-ccchhhhhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHH
Q 000518 274 S-RRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1448)
Q Consensus 274 T-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 334 (1448)
| ....+..........+++.+++.++....+.+.+..+...- .++....|++.++|-+..
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i-~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH-DEESLKLIAENSSGSMRN 213 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence 5 44444332233456789999999999999988875332221 245577899999987753
No 77
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.17 E-value=4.4e-06 Score=94.90 Aligned_cols=90 Identities=14% Similarity=0.203 Sum_probs=63.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc--CHHHHHHHHHHHhCCCCCCCChHHHHH------HHH
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP--DLKRIRREIADQLGLNFCEESDSERIM------MLC 232 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~------~l~ 232 (1448)
...+|+|++|+||||||+++|+....+ +|+.++||.+.+.. ++.++++.|...+-....++....... ...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999998854 89999999999887 788888888632211111222111111 112
Q ss_pred HHH-HccCcEEEEEcCCCCc
Q 000518 233 NRL-KREKKILVILDDIWTS 251 (1448)
Q Consensus 233 ~~l-~~~k~~LlVlDdv~~~ 251 (1448)
+++ .++++++|++|++...
T Consensus 249 e~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHcCCCEEEEEEChHHH
Confidence 222 3579999999999654
No 78
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.15 E-value=1.6e-05 Score=100.38 Aligned_cols=171 Identities=16% Similarity=0.197 Sum_probs=100.8
Q ss_pred CCccccccHHHHHH---HHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc-CHHHHHHHH
Q 000518 136 EGHEFIESRESILN---DILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREI 211 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~---~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i 211 (1448)
.....|+|++..+. .+...+.....+.+.|+|++|+||||+|+.+++... ..| +.+.... .+.++ +++
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~--~~f-----~~lna~~~~i~di-r~~ 96 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR--AHF-----SSLNAVLAGVKDL-RAE 96 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc--Ccc-----eeehhhhhhhHHH-HHH
Confidence 44567889888774 455666667777889999999999999999998764 333 1111110 11111 111
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHH-ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEE--eccch--hhhhcC
Q 000518 212 ADQLGLNFCEESDSERIMMLCNRLK-REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVT--SRRRD--VLVSEM 284 (1448)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvT--TR~~~--v~~~~~ 284 (1448)
+......+. .+++.+||+||++.. ..++.+...+. .|..++|+ |++.. +.....
T Consensus 97 ----------------i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 97 ----------------VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALV 157 (725)
T ss_pred ----------------HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhh
Confidence 111111111 146789999999754 34555543332 45656653 34331 111112
Q ss_pred cccceEEeecCChHHHHHHHHHHhCC------CCCCccHHHHHHHHHHHhCCChH
Q 000518 285 HCQNNYCVSVLNKEEAWSLFSKVVGN------CVEDPDLQTVAIQVANECGGLPI 333 (1448)
Q Consensus 285 ~~~~~~~l~~L~~~e~~~Lf~~~~~~------~~~~~~~~~~~~~i~~~~~glPl 333 (1448)
.....+++++++.++...++.+.+.. ...-.-.+++...|++.+.|-..
T Consensus 158 SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 158 SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 23457999999999999999887631 11112224567788888888654
No 79
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=1.8e-05 Score=96.93 Aligned_cols=180 Identities=11% Similarity=0.135 Sum_probs=109.9
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCC-------------------cceEE
Q 000518 135 NEGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRI-------------------FDEVV 194 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~~-------------------f~~~~ 194 (1448)
+..+..++|.+..+..|..++...++ ..+.++|+.|+||||+|+.+++..--... |--++
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceE
Confidence 34567889999999999999886654 47899999999999999999886531111 11112
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHH----HccCcEEEEEcCCCCcc--chhhccCCCCCCCCCc
Q 000518 195 FAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRL----KREKKILVILDDIWTSL--DLERTGIPFGDVHRGC 268 (1448)
Q Consensus 195 wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs 268 (1448)
.++......+ +.++.+.... ..+++-++|+|++.... ..+.+...+......+
T Consensus 92 EidaAs~~gV---------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v 150 (709)
T PRK08691 92 EIDAASNTGI---------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHV 150 (709)
T ss_pred EEeccccCCH---------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCc
Confidence 2222222222 2222222211 12567799999997653 2444444443333455
Q ss_pred EEEEEeccc-hhhhhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHH
Q 000518 269 KILVTSRRR-DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1448)
Q Consensus 269 ~ilvTTR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 336 (1448)
++|++|.+. .+..........+++.+++.++....+.+.+......- ..+..+.|++.++|-+.-+.
T Consensus 151 ~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i-d~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 151 KFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY-EPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred EEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHhCCCHHHHH
Confidence 666666433 33321223345678889999999999988874322211 24567889999999875443
No 80
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=3.7e-07 Score=101.91 Aligned_cols=187 Identities=24% Similarity=0.238 Sum_probs=101.3
Q ss_pred cccceEEEcccCCCCCCCC--CC-CCCCccEEEcCCCCCCCCCC-chhhcCCCCceEEEecCCcCcccCcc--CCCCCCC
Q 000518 487 LKNCIAIFLHDINTGELPE--GL-EYPHLTSLCMNPKDPFLHIP-DNFFAGMPKLRVLVLTRMKLLTLPSS--FCHLPNL 560 (1448)
Q Consensus 487 ~~~~r~lsl~~~~~~~lp~--~~-~~~~L~~L~l~~n~~~~~~~-~~~f~~l~~Lr~L~L~~~~i~~lp~~--i~~L~~L 560 (1448)
++++|.+++.++.....+. .. .|++++.|+|+.|-+....+ ..+...+++|+.|+|+.|.+...-++ -..+.+|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 3445666666655554442 12 57777777777765432111 12345677777777777766532221 2355677
Q ss_pred CEEeccCCCCC--CC-cccCCCCCCCEEEcccCC-CcccchhhhccCccCEEeccCCCCCCccCc-cccCCCCCCCEEEe
Q 000518 561 ESLCLDQCILG--DI-AIIGNLKNLEILSLCCSD-IEQLPREIGELTQLKLLDLSNCSKLKVIPP-NVISSLSQLEELYL 635 (1448)
Q Consensus 561 r~L~L~~~~i~--~l-~~i~~L~~L~~L~Ls~~~-l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~-~~l~~L~~L~~L~l 635 (1448)
+.|.|++|.++ ++ .....+++|..|+|.+|. +..--.+...+..|+.|||++|+.+ ..+. ..++.++.|+.|++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhc
Confidence 77777777664 22 344556677777777663 2221223344566777777776633 3331 11566777777777
Q ss_pred eCCCccccccccccccCCcChhhcCCCCCCCEEEeecCCCcCCC
Q 000518 636 GNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILP 679 (1448)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 679 (1448)
+.|.+..-.. . ..........+++|+.|++..|.+...+
T Consensus 279 s~tgi~si~~-~----d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 279 SSTGIASIAE-P----DVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred cccCcchhcC-C----CccchhhhcccccceeeecccCcccccc
Confidence 7666541000 0 0111223345567777777766664333
No 81
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.14 E-value=6e-06 Score=90.64 Aligned_cols=92 Identities=13% Similarity=0.137 Sum_probs=64.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC--cCHHHHHHHHHHHhCCCCCCCChHH-------HHH
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT--PDLKRIRREIADQLGLNFCEESDSE-------RIM 229 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~~~~~-------~~~ 229 (1448)
+-..++|+|++|+|||||++.+++..... +|+.++|+.+.++ .++.++++.+...+-....+.+... ...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34579999999999999999999988754 8999999998777 7999999998333211111111111 111
Q ss_pred HHHHHHHccCcEEEEEcCCCCc
Q 000518 230 MLCNRLKREKKILVILDDIWTS 251 (1448)
Q Consensus 230 ~l~~~l~~~k~~LlVlDdv~~~ 251 (1448)
.......+++++++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 2222223489999999999654
No 82
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.12 E-value=9.1e-05 Score=96.20 Aligned_cols=254 Identities=17% Similarity=0.200 Sum_probs=147.1
Q ss_pred cccHHHHHHHHHHHHc---CCCeEEEEEEcCCCchHHHHHHHHHHHHhcc-CCcceEEEEEecCCcC---HHHHHHHHHH
Q 000518 141 IESRESILNDILDALR---GPYVYMIGVYGMAGIGKTTLVKEVARLAKEG-RIFDEVVFAEVSQTPD---LKRIRREIAD 213 (1448)
Q Consensus 141 ~~gR~~~~~~l~~~L~---~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~-~~f~~~~wv~v~~~~~---~~~~~~~i~~ 213 (1448)
++||+.+++.|.+.+. ...-.++.|.|..|+|||+++++|......+ ..|-...+-....+.. ..+.+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 6899999999999886 3455699999999999999999999987633 1111111111112221 2233333333
Q ss_pred Hh-------------------CCCCCC-----------------------CChH-----HHHHHHHHHHHccCcEEEEEc
Q 000518 214 QL-------------------GLNFCE-----------------------ESDS-----ERIMMLCNRLKREKKILVILD 246 (1448)
Q Consensus 214 ~l-------------------~~~~~~-----------------------~~~~-----~~~~~l~~~l~~~k~~LlVlD 246 (1448)
++ +..... .... .....+.....+.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 32 111000 0000 011222233334679999999
Q ss_pred CCC-Ccc-c---hhhccCCCCC-CCCCcEEEE--Eeccc-hhhhhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccH
Q 000518 247 DIW-TSL-D---LERTGIPFGD-VHRGCKILV--TSRRR-DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDL 317 (1448)
Q Consensus 247 dv~-~~~-~---~~~l~~~l~~-~~~gs~ilv--TTR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~ 317 (1448)
|+. -+. . .+.+...... ...-..|.. |.+.. ............+.+.||+..+...+.....+..... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~--~ 239 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL--P 239 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc--c
Confidence 983 221 1 1111111100 000112333 23222 1111123345689999999999999999988764322 2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhcCCC------hH-HHHHHHHHHhhhccCCcchHHHHHhHHHHHHcccCCCchHHH
Q 000518 318 QTVAIQVANECGGLPIAILTVARTLRNKP------LF-VWKKALQELRFSARNFTGLEALLGSTIELIYNYLEGEELKLT 390 (1448)
Q Consensus 318 ~~~~~~i~~~~~glPlai~~~~~~l~~~~------~~-~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~c 390 (1448)
.+....|.++..|.|+-+.-+-..+.... +. .|..-..++. .....+++. ..+..-.+.||.. .++.
T Consensus 240 ~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~----~~~~~~~vv-~~l~~rl~kL~~~-t~~V 313 (849)
T COG3899 240 APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG----ILATTDAVV-EFLAARLQKLPGT-TREV 313 (849)
T ss_pred chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC----CchhhHHHH-HHHHHHHhcCCHH-HHHH
Confidence 45688999999999999998888886641 11 2554333322 122233345 5688889999998 6999
Q ss_pred HHHhccCCCCCC
Q 000518 391 FLLCSLMKHPCD 402 (1448)
Q Consensus 391 fl~~s~fp~~~~ 402 (1448)
.-.-|++-..|+
T Consensus 314 l~~AA~iG~~F~ 325 (849)
T COG3899 314 LKAAACIGNRFD 325 (849)
T ss_pred HHHHHHhCccCC
Confidence 999999877433
No 83
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.12 E-value=7.1e-06 Score=92.48 Aligned_cols=287 Identities=21% Similarity=0.223 Sum_probs=176.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCc-ceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHc
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF-DEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f-~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1448)
..+.+.++|.|||||||++-++.. .+ .-| +.+.++....-.+...+.-.+...++..... -...+..+..+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~--g~~~~~~~~~~~~- 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP--GDSAVDTLVRRIG- 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhccccccc--chHHHHHHHHHHh-
Confidence 357899999999999999999998 44 446 4555666666666666666666666654321 1223334455554
Q ss_pred cCcEEEEEcCCCCcc-chhhccCCCCCCCCCcEEEEEeccchhhhhcCcccceEEeecCCh-HHHHHHHHHHhCC----C
Q 000518 238 EKKILVILDDIWTSL-DLERTGIPFGDVHRGCKILVTSRRRDVLVSEMHCQNNYCVSVLNK-EEAWSLFSKVVGN----C 311 (1448)
Q Consensus 238 ~k~~LlVlDdv~~~~-~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~-~e~~~Lf~~~~~~----~ 311 (1448)
++|.++|+||..+.. .-..+...+..+...-.|+.|+|.... ........+++|+. +++.++|...+.. -
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 799999999987763 222222233344455678888887654 33455677788775 4899999887731 1
Q ss_pred CCCccHHHHHHHHHHHhCCChHHHHHHHHHhcCCChHH----HHHHHHHHhhhccCCcc--hHHHHHhHHHHHHcccCCC
Q 000518 312 VEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFV----WKKALQELRFSARNFTG--LEALLGSTIELIYNYLEGE 385 (1448)
Q Consensus 312 ~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~----w~~~l~~l~~~~~~~~~--~~~~~~~~l~~sy~~L~~~ 385 (1448)
.-.......+.+|.++..|.|++|...++..+.-...+ ..+-...+.. ...... ..... ..+..||.-|...
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~-~~r~a~~~~qtl~-asl~ws~~lLtgw 240 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTG-GARLAVLRQQTLR-ASLDWSYALLTGW 240 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhc-ccccchhHHHhcc-chhhhhhHhhhhH
Confidence 12233355688999999999999999999988765433 1111111110 011111 11145 8999999999998
Q ss_pred chHHHHHHhccCCCCCCccHHHHHHHHhcccccc--chhhHHHHHHHHHHHHHhHhcccccccCCC--CCceehhhHHHH
Q 000518 386 ELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFE--DIYTMQERRDRVYALVRGLKDTCLLHDDDT--ADWFSMLGFVRN 461 (1448)
Q Consensus 386 ~lk~cfl~~s~fp~~~~~~i~~li~~w~~~g~~~--~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~--~~~~~mHdlv~~ 461 (1448)
+ +.-|--++.|...|+-. ...|.+.|-.. +.+ .....+-.+++.++..-.+. .-.|+.-+-+|.
T Consensus 241 e-~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y-------~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~ 308 (414)
T COG3903 241 E-RALFGRLAVFVGGFDLG----LALAVAAGADVDVPRY-------LVLLALTLLVDKSLVVALDLLGRARYRLLETGRR 308 (414)
T ss_pred H-HHHhcchhhhhhhhccc----HHHHHhcCCccccchH-------HHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHH
Confidence 4 88899999998843332 22333333221 111 11122455677777643322 235677777777
Q ss_pred HHHHhhcc
Q 000518 462 VAISIASI 469 (1448)
Q Consensus 462 ~a~~~~~~ 469 (1448)
|+..+-.+
T Consensus 309 YalaeL~r 316 (414)
T COG3903 309 YALAELHR 316 (414)
T ss_pred HHHHHHHh
Confidence 77665444
No 84
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=2.5e-05 Score=93.39 Aligned_cols=201 Identities=13% Similarity=0.130 Sum_probs=116.0
Q ss_pred CCccccccHHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEE-ecCCcCHHHHHHHHHH
Q 000518 136 EGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAE-VSQTPDLKRIRREIAD 213 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~-v~~~~~~~~~~~~i~~ 213 (1448)
.....++|.+..++.|..++...+++ .+.++|+.|+||||+|+.+++...-...++...|.. +...+..-...+.+..
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhc
Confidence 34567889999999999988866665 588999999999999999998774221111111110 0111111122222221
Q ss_pred HhCCCC-----CCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEe-ccchhhh
Q 000518 214 QLGLNF-----CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS-RRRDVLV 281 (1448)
Q Consensus 214 ~l~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTT-R~~~v~~ 281 (1448)
....+. ......+.+..+.+.+. .+++-++|+|++... ..++.+...+....+.+.+|++| +...+..
T Consensus 93 ~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 93 GTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHH
Confidence 111110 00111233334444442 246678999998765 35666665555444566666554 4444433
Q ss_pred hcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000518 282 SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1448)
Q Consensus 282 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 337 (1448)
........+++.++++++....+...+..... .-..+.+..|++.++|.+--+..
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGI-SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 11222357889999999998888887732211 12245678899999997754433
No 85
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.10 E-value=4.9e-05 Score=81.11 Aligned_cols=160 Identities=16% Similarity=0.111 Sum_probs=95.9
Q ss_pred HHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhcc--------------------CCcceEEEEEec-CCcCHHHH
Q 000518 150 DILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEG--------------------RIFDEVVFAEVS-QTPDLKRI 207 (1448)
Q Consensus 150 ~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~--------------------~~f~~~~wv~v~-~~~~~~~~ 207 (1448)
.+.+.+...++ ..+.++|+.|+||||+|+.+.+...-. .+.|. .++... ....+++
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~- 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQ- 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHH-
Confidence 34555555555 679999999999999999999886432 11222 222211 1122211
Q ss_pred HHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEeccc-hhhhhcC
Q 000518 208 RREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLVSEM 284 (1448)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~~~ 284 (1448)
.+++.+.+.... ..+.+-++|+||+... ..++.+...+......+.+|++|++. .+.....
T Consensus 81 i~~i~~~~~~~~----------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~ 144 (188)
T TIGR00678 81 VRELVEFLSRTP----------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR 144 (188)
T ss_pred HHHHHHHHccCc----------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH
Confidence 122222221100 0156778999998765 34555655555444566677766644 2222112
Q ss_pred cccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHH
Q 000518 285 HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1448)
Q Consensus 285 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 334 (1448)
.....+++.+++.++..+.+.+. | . ..+.+..|++.++|.|..
T Consensus 145 sr~~~~~~~~~~~~~~~~~l~~~-g--i----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 145 SRCQVLPFPPLSEEALLQWLIRQ-G--I----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred hhcEEeeCCCCCHHHHHHHHHHc-C--C----CHHHHHHHHHHcCCCccc
Confidence 23458999999999998888776 3 1 145688999999998853
No 86
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=4e-05 Score=94.66 Aligned_cols=195 Identities=14% Similarity=0.120 Sum_probs=113.9
Q ss_pred CCccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000518 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 214 (1448)
..+..++|.+..++.|...+...++ ..+.++|+.|+||||+|+.+++..--...+. ...+..-...+.|...
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~g 85 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQG 85 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHcC
Confidence 4566789999999999988886655 4568999999999999999998764211100 0011111222222111
Q ss_pred hCCCC-----CCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEE-Eeccchhhhh
Q 000518 215 LGLNF-----CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-TSRRRDVLVS 282 (1448)
Q Consensus 215 l~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TTR~~~v~~~ 282 (1448)
-..+. ......+.++.+.+.+. .+++-++|+|++... ...+.+...+-......++|+ ||....+...
T Consensus 86 ~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 86 RFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred CCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchH
Confidence 00000 00011222333333322 367789999999765 345555444433334555555 5554444432
Q ss_pred cCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000518 283 EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1448)
Q Consensus 283 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 338 (1448)
.......+++.+++.++....+.+.+..+.... ..+..+.|++.++|.+..+..+
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~-e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF-EPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 223356899999999999999988773222211 1355678999999988654444
No 87
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=3e-05 Score=94.61 Aligned_cols=184 Identities=11% Similarity=0.164 Sum_probs=111.6
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccC-------------------CcceEE
Q 000518 135 NEGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGR-------------------IFDEVV 194 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~~~~~~~~~~-------------------~f~~~~ 194 (1448)
|..+..++|.+..++.|..++...+++ .+.++|+.|+||||+|+.+++..--.. .|.-++
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 345667899999999999999866654 578999999999999999998763211 111133
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEE
Q 000518 195 FAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV 272 (1448)
Q Consensus 195 wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv 272 (1448)
.++......++++ +++++.+... -..++.-++|+|+|... ...+.+...+......+++|+
T Consensus 92 eidaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIl 154 (509)
T PRK14958 92 EVDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFIL 154 (509)
T ss_pred EEcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 3333223333332 2222222110 01256778999999875 345555554544345566665
Q ss_pred Ee-ccchhhhhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHH
Q 000518 273 TS-RRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1448)
Q Consensus 273 TT-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 336 (1448)
+| ....+..........+++.+++.++....+.+.+......-+ .+....|++.++|-+.-+.
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~-~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE-NAALDLLARAANGSVRDAL 218 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcHHHHH
Confidence 54 433333211223457889999999988877777643222111 3456788899998875433
No 88
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=4e-05 Score=93.10 Aligned_cols=197 Identities=12% Similarity=0.098 Sum_probs=112.2
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000518 135 NEGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 213 (1448)
|.....++|++..++.+..++...++ +.+.++|+.|+||||+|+.+++...-.. |... ..+..-...+.+..
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~~ 84 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESINT 84 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHHc
Confidence 34566788999999999998875544 5788999999999999999998764211 2111 01111122222221
Q ss_pred HhCCCCC-----CCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEe-ccchhhh
Q 000518 214 QLGLNFC-----EESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS-RRRDVLV 281 (1448)
Q Consensus 214 ~l~~~~~-----~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTT-R~~~v~~ 281 (1448)
....+.. .....+.++.+...+. .+++-++|+|++... ..+..+...+......+.+|++| ....+..
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 1111100 0011222333332222 135557999999764 34555555444333455555444 4333332
Q ss_pred hcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChH-HHHHHH
Q 000518 282 SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI-AILTVA 339 (1448)
Q Consensus 282 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~ 339 (1448)
........+++.++++++....+.+.+...... -..+.+..+++.++|-+. |+..+-
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~-Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKIK-IEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 112335588999999999999988877432211 113457788999999664 444433
No 89
>PLN03150 hypothetical protein; Provisional
Probab=98.09 E-value=6.7e-06 Score=104.10 Aligned_cols=104 Identities=23% Similarity=0.412 Sum_probs=80.9
Q ss_pred CceEEEecCCcCc-ccCccCCCCCCCCEEeccCCCCC-CC-cccCCCCCCCEEEcccCCCc-ccchhhhccCccCEEecc
Q 000518 536 KLRVLVLTRMKLL-TLPSSFCHLPNLESLCLDQCILG-DI-AIIGNLKNLEILSLCCSDIE-QLPREIGELTQLKLLDLS 611 (1448)
Q Consensus 536 ~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L~~~~i~-~l-~~i~~L~~L~~L~Ls~~~l~-~LP~~i~~L~~L~~L~Ls 611 (1448)
.++.|+|++|.+. .+|..++.+++|++|+|++|.+. .+ ..++.+.+|++|+|++|.+. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4777888888887 67888888888888888888875 34 56888888888888888887 678888888888888888
Q ss_pred CCCCCCccCccccCC-CCCCCEEEeeCCCc
Q 000518 612 NCSKLKVIPPNVISS-LSQLEELYLGNTSV 640 (1448)
Q Consensus 612 ~~~~l~~lp~~~l~~-L~~L~~L~l~~~~~ 640 (1448)
+|.....+|.. ++. +.++..+++.+|..
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCcc
Confidence 88866678876 544 35667788777754
No 90
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.09 E-value=4.8e-06 Score=95.76 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=95.1
Q ss_pred HhhcCCccEEEEE-ecceeEeecchhhhhhccccccccEEEcCCCCCCchhhccCCcchhhhcccceeEEeccCCccccC
Q 000518 1118 LQYFKNLEKLELR-WSSYKQIFSYKEAEKHAGKLTHIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLV 1196 (1448)
Q Consensus 1118 l~~l~~L~~L~i~-c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~l~sL~~L~i~~C~~L~~l~ 1196 (1448)
+..+..++.|+|+ | .++++|. .+++|++|.+++|.+|+.++.. + .++|++|.|++|.++..+|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---------LP~sLtsL~Lsnc~nLtsLP~~----L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---------LPNELTEITIENCNNLTTLPGS----I--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---------CCCCCcEEEccCCCCcccCCch----h--hhhhhheEccCcccccccc
Confidence 4557899999999 6 7888763 5678999999999999888532 2 3689999999999888776
Q ss_pred CCCcccCcccEEEEecCCCCccccchhhhhccccccEEEEecccccchhccccCccccccccccccccccccccccccee
Q 000518 1197 PSSPSFRNLITLEVWYCKGLKNLVTSSTAKSLVQLMQLRIDGCKMITEIISNEGDVAEDEIVFSKLKWLSLENLESLTSF 1276 (1448)
Q Consensus 1197 ~~~~~l~sL~~L~I~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~l~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~L~~l 1276 (1448)
+ +|+.|++. |..+..+. .++ ++|+.|.+.++....... .....+++|+.|.+.+|..+. +
T Consensus 112 ~------sLe~L~L~-~n~~~~L~--~LP---ssLk~L~I~~~n~~~~~~-------lp~~LPsSLk~L~Is~c~~i~-L 171 (426)
T PRK15386 112 E------SVRSLEIK-GSATDSIK--NVP---NGLTSLSINSYNPENQAR-------IDNLISPSLKTLSLTGCSNII-L 171 (426)
T ss_pred c------ccceEEeC-CCCCcccc--cCc---chHhheeccccccccccc-------cccccCCcccEEEecCCCccc-C
Confidence 4 57777775 44433331 111 457788875543211110 011256899999999998664 4
Q ss_pred cCCcccccCCCcceEEeccCC
Q 000518 1277 YSGNYTFKFPCLEDLFVIECP 1297 (1448)
Q Consensus 1277 ~~~~~~~~~~sL~~L~I~~Cp 1297 (1448)
|.+ ++ .+|+.|.+..+.
T Consensus 172 P~~-LP---~SLk~L~ls~n~ 188 (426)
T PRK15386 172 PEK-LP---ESLQSITLHIEQ 188 (426)
T ss_pred ccc-cc---ccCcEEEecccc
Confidence 432 23 589999987763
No 91
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=9.3e-05 Score=91.08 Aligned_cols=181 Identities=13% Similarity=0.146 Sum_probs=110.3
Q ss_pred CCccccccHHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccC-------------------CcceEEE
Q 000518 136 EGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGR-------------------IFDEVVF 195 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~~~~~~~~~~-------------------~f~~~~w 195 (1448)
..+..++|.+..++.|..++...++. .+.++|+.|+||||+|+.+++..--.. .|.-+++
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 34567889999999999988865554 568999999999999999998763111 1111222
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCcc--chhhccCCCCCCCCCcE
Q 000518 196 AEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGCK 269 (1448)
Q Consensus 196 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ 269 (1448)
+.......+ +.++.+..... .+++-++|+|++.... ..+.+...+......+.
T Consensus 93 i~~~~~~~v---------------------d~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 93 VDAASNTQV---------------------DAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred eeccccCCH---------------------HHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 322222222 22222222221 2567799999997653 35555555544334555
Q ss_pred EEEEe-ccchhhhhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChH-HHHHH
Q 000518 270 ILVTS-RRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI-AILTV 338 (1448)
Q Consensus 270 ilvTT-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~ 338 (1448)
+|++| ....+..........+++++++.++....+.+.+..+.... ..+..+.|++.++|.+. |+..+
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~-~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF-DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 55555 43333321122345789999999999988888774322211 23456789999999775 44443
No 92
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=9.5e-05 Score=86.38 Aligned_cols=196 Identities=14% Similarity=0.039 Sum_probs=115.7
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccCCcceE------EEEEecCCcCHHHH
Q 000518 135 NEGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEV------VFAEVSQTPDLKRI 207 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~------~wv~v~~~~~~~~~ 207 (1448)
|.....++|.+..++.|.+.+...+++ .+.++|+.|+||+|+|..+++..--....... .=..+.... ..
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~~ 91 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---PV 91 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---hH
Confidence 445667899999999999988866654 68999999999999999999876421111000 000000000 11
Q ss_pred HHHHHHHhCCC-------CC-------CCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCC
Q 000518 208 RREIADQLGLN-------FC-------EESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRG 267 (1448)
Q Consensus 208 ~~~i~~~l~~~-------~~-------~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g 267 (1448)
.+.|...-..+ .. ..-..+.++.+.+.+. .+++.++|+||++.. ...+.+...+.....+
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 11221111100 00 0112344455554443 256779999999765 3444554444433456
Q ss_pred cEEEEEeccch-hhhhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000518 268 CKILVTSRRRD-VLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1448)
Q Consensus 268 s~ilvTTR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 338 (1448)
+.+|++|.+.. +..........+.+.+++.++..+.+.+..+... .+....+++.++|.|.....+
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-----HHHHHHHHHHcCCCHHHHHHH
Confidence 66777666553 3221233456899999999999999987653211 122367899999999865544
No 93
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=7.1e-05 Score=88.12 Aligned_cols=186 Identities=11% Similarity=-0.002 Sum_probs=106.2
Q ss_pred ccccccHHHHHHHHHHHHcCCC----------eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHH
Q 000518 138 HEFIESRESILNDILDALRGPY----------VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRI 207 (1448)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~~~~----------~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 207 (1448)
...++|.+..++.|..++.... .+.+.++|+.|+|||++|+.+++..--...- + ..+..-..
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----~----~~Cg~C~~ 75 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----E----PGCGECRA 75 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----C----CCCCCCHH
Confidence 3467899999999998887542 4678899999999999999998765311100 0 00000011
Q ss_pred HHHHHHHhCCCC------CCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEec
Q 000518 208 RREIADQLGLNF------CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSR 275 (1448)
Q Consensus 208 ~~~i~~~l~~~~------~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR 275 (1448)
.+.+...-..+. ......+.++.+.+.+. .+++-++|+|+++.. ...+.+...+.....+..+|++|.
T Consensus 76 C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~ 155 (394)
T PRK07940 76 CRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAP 155 (394)
T ss_pred HHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEEC
Confidence 111110000000 00011222333333332 246668889999765 233444444443345565666555
Q ss_pred cc-hhhhhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000518 276 RR-DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1448)
Q Consensus 276 ~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 337 (1448)
+. .+..........+.+.+++.++..+.+.+..|. ..+.++.+++.++|.|.....
T Consensus 156 ~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~------~~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 156 SPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV------DPETARRAARASQGHIGRARR 212 (394)
T ss_pred ChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC------CHHHHHHHHHHcCCCHHHHHH
Confidence 53 443322233468999999999999888754431 134577899999999965433
No 94
>PRK08727 hypothetical protein; Validated
Probab=98.06 E-value=3.9e-05 Score=84.50 Aligned_cols=160 Identities=14% Similarity=0.045 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHH
Q 000518 147 ILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSE 226 (1448)
Q Consensus 147 ~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 226 (1448)
.+..+.....+.....+.|+|+.|+|||.|++.+++....+ ...++++++.+ ....+.
T Consensus 28 ~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~~-------------- 85 (233)
T PRK08727 28 LLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRLR-------------- 85 (233)
T ss_pred HHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhHH--------------
Confidence 34443333333334579999999999999999999987633 23556665422 111111
Q ss_pred HHHHHHHHHHccCcEEEEEcCCCCcc---chhh-ccCCCCC-CCCCcEEEEEeccchh---------hhhcCcccceEEe
Q 000518 227 RIMMLCNRLKREKKILVILDDIWTSL---DLER-TGIPFGD-VHRGCKILVTSRRRDV---------LVSEMHCQNNYCV 292 (1448)
Q Consensus 227 ~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~~-l~~~l~~-~~~gs~ilvTTR~~~v---------~~~~~~~~~~~~l 292 (1448)
...+.+ .+.-+||+||+.... .|.. +...+.. ...|..||+|++...- .. .+.....+++
T Consensus 86 ---~~~~~l--~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S-Rl~~~~~~~l 159 (233)
T PRK08727 86 ---DALEAL--EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS-RLAQCIRIGL 159 (233)
T ss_pred ---HHHHHH--hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH-HHhcCceEEe
Confidence 112223 244589999997542 2332 2111111 1246679999985321 11 1223458899
Q ss_pred ecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHH
Q 000518 293 SVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1448)
Q Consensus 293 ~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 335 (1448)
++++.++-.+++++++.... -.-.+++..-|++.++|-.-.+
T Consensus 160 ~~~~~e~~~~iL~~~a~~~~-l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 160 PVLDDVARAAVLRERAQRRG-LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred cCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhCCCCHHHH
Confidence 99999999999998774221 1122456778888887765444
No 95
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.06 E-value=4e-06 Score=70.55 Aligned_cols=59 Identities=34% Similarity=0.567 Sum_probs=34.4
Q ss_pred CCccEEEcCCCCCCCCCCchhhcCCCCceEEEecCCcCcccC-ccCCCCCCCCEEeccCCC
Q 000518 510 PHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLP-SSFCHLPNLESLCLDQCI 569 (1448)
Q Consensus 510 ~~L~~L~l~~n~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~ 569 (1448)
++|++|++++|.+ ..+|...|.++++|++|++++|.+..+| ..|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l-~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKL-TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTE-SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCC-CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3556666666644 4555555666666666666666666553 345566666666665554
No 96
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=8.4e-05 Score=86.31 Aligned_cols=199 Identities=15% Similarity=0.056 Sum_probs=117.7
Q ss_pred cCCCccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCC--cceEEEEEecCCcCHHHHHHH
Q 000518 134 YNEGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRI--FDEVVFAEVSQTPDLKRIRRE 210 (1448)
Q Consensus 134 ~~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~~--f~~~~wv~v~~~~~~~~~~~~ 210 (1448)
.|.....++|.++..+.+...+...+. ..+.|+|+.|+||||+|..+++..--... +... .....+......+.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~ 94 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQ 94 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHH
Confidence 345667789999999999999886554 46999999999999999999988742110 1111 00111111123333
Q ss_pred HHHHhCCC-------CC-------CCChHHHHHHHHHHHH----ccCcEEEEEcCCCCcc--chhhccCCCCCCCCCcE-
Q 000518 211 IADQLGLN-------FC-------EESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGCK- 269 (1448)
Q Consensus 211 i~~~l~~~-------~~-------~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~- 269 (1448)
|...-..+ .+ ..-..+.+..+.+.+. .+++-++|+|++.... ..+.+...+.....+..
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 33221110 00 0112344555555544 2577899999998652 33444433332223444
Q ss_pred EEEEeccchhhhhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000518 270 ILVTSRRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1448)
Q Consensus 270 ilvTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 338 (1448)
|++|++...+..........+++.+++.++..+++.+.... .. ...+.+..|++.++|.|.....+
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~~--~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-QG--SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-cC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 45555544443322233468999999999999999874321 11 11445778999999999865544
No 97
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.04 E-value=0.00011 Score=87.66 Aligned_cols=184 Identities=13% Similarity=0.125 Sum_probs=110.8
Q ss_pred CccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhcc--------------------CCcceEEE
Q 000518 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEG--------------------RIFDEVVF 195 (1448)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~--------------------~~f~~~~w 195 (1448)
....++|.+..++.+.+++..... +.+.++|+.|+||||+|+.++....-. .+++. ++
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~ 90 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IE 90 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EE
Confidence 455688999999999998876554 478899999999999999999876411 12222 22
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEE
Q 000518 196 AEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVT 273 (1448)
Q Consensus 196 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvT 273 (1448)
++-.....+.+ .+++...+... .. .+++-++|+|++... ...+.+...+......+.+|++
T Consensus 91 ~~~~~~~~~~~-~~~l~~~~~~~---------------p~-~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 91 IDAASNNGVDD-IREILDNVKYA---------------PS-SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred eeccccCCHHH-HHHHHHHHhcC---------------cc-cCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence 32221111111 12222221100 00 145668999998655 3455554444433456666666
Q ss_pred eccch-hhhhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHH
Q 000518 274 SRRRD-VLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVA 339 (1448)
Q Consensus 274 TR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 339 (1448)
|.+.. +..........+++.++++++....+..++...... -..+.+..+++.++|-|..+....
T Consensus 154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~-i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK-IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCChHHHHHHH
Confidence 65443 222112234578889999999999998877322111 114567888999999886655443
No 98
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.03 E-value=3.9e-06 Score=70.65 Aligned_cols=58 Identities=40% Similarity=0.615 Sum_probs=34.4
Q ss_pred CCCEEEcccCCCcccch-hhhccCccCEEeccCCCCCCccCccccCCCCCCCEEEeeCCC
Q 000518 581 NLEILSLCCSDIEQLPR-EIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTS 639 (1448)
Q Consensus 581 ~L~~L~Ls~~~l~~LP~-~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~~~ 639 (1448)
+|++|++++|.++.+|. .+..+++|++|++++|. +..++++.+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 45566666666666653 35566666666666554 555655556666666666666553
No 99
>PLN03150 hypothetical protein; Provisional
Probab=98.03 E-value=8.8e-06 Score=103.02 Aligned_cols=104 Identities=28% Similarity=0.370 Sum_probs=69.5
Q ss_pred CCCEEeccCCCCCC-C-cccCCCCCCCEEEcccCCCc-ccchhhhccCccCEEeccCCCCCCccCccccCCCCCCCEEEe
Q 000518 559 NLESLCLDQCILGD-I-AIIGNLKNLEILSLCCSDIE-QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYL 635 (1448)
Q Consensus 559 ~Lr~L~L~~~~i~~-l-~~i~~L~~L~~L~Ls~~~l~-~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l 635 (1448)
.++.|+|++|.+.. + ..+++|.+|++|+|++|.+. .+|..++.+++|+.|++++|+....+|.. +++|++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 36677777777653 2 56777777788888777776 67777777777888887777744566666 777777888877
Q ss_pred eCCCccccccccccccCCcChhhcCC-CCCCCEEEeecCC
Q 000518 636 GNTSVEWEFEGLNLERNNASLQELSI-LSHLTTLEIHIRD 674 (1448)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~l~~-L~~L~~L~l~~~~ 674 (1448)
++|.+.+..+ ..++. +.++..+++.+|.
T Consensus 498 s~N~l~g~iP-----------~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVP-----------AALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCC-----------hHHhhccccCceEEecCCc
Confidence 7777663332 33333 2345566666554
No 100
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.01 E-value=6.3e-05 Score=83.02 Aligned_cols=165 Identities=15% Similarity=0.097 Sum_probs=99.2
Q ss_pred HHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChH
Q 000518 146 SILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDS 225 (1448)
Q Consensus 146 ~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~ 225 (1448)
..+..+.++......+.+.|+|+.|+|||+|++.+++..... -..+.++.+.....
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~---------------------- 86 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW---------------------- 86 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh----------------------
Confidence 345555555544455789999999999999999999987632 23456666543110
Q ss_pred HHHHHHHHHHHccCcEEEEEcCCCCc---cchhhcc-CCCCC-CCCC-cEEEEEeccchhh---------hhcCcccceE
Q 000518 226 ERIMMLCNRLKREKKILVILDDIWTS---LDLERTG-IPFGD-VHRG-CKILVTSRRRDVL---------VSEMHCQNNY 290 (1448)
Q Consensus 226 ~~~~~l~~~l~~~k~~LlVlDdv~~~---~~~~~l~-~~l~~-~~~g-s~ilvTTR~~~v~---------~~~~~~~~~~ 290 (1448)
....+.+.+. +.-+|++||+... ..|+... ..+.. ...| .++|+||+...-. . .+....++
T Consensus 87 -~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S-Rl~~g~~~ 162 (235)
T PRK08084 87 -FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS-RLDWGQIY 162 (235)
T ss_pred -hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH-HHhCCcee
Confidence 0011122222 2247899999654 3343221 11211 1123 4799998855221 1 23445689
Q ss_pred EeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHH
Q 000518 291 CVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVA 339 (1448)
Q Consensus 291 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 339 (1448)
+++++++++-.+++++++.... -.-.+++..-|++.+.|-.-++..+-
T Consensus 163 ~l~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 163 KLQPLSDEEKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred eecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 9999999999999988663221 12235678888888887765554443
No 101
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.98 E-value=1.7e-05 Score=84.65 Aligned_cols=48 Identities=23% Similarity=0.246 Sum_probs=34.8
Q ss_pred ccccHHHHHHHHHHHHc---CCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 000518 140 FIESRESILNDILDALR---GPYVYMIGVYGMAGIGKTTLVKEVARLAKEG 187 (1448)
Q Consensus 140 ~~~gR~~~~~~l~~~L~---~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~ 187 (1448)
.|+||+++++++.+.+. ....+.+.|+|++|+|||+|.++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999993 4556899999999999999999999998755
No 102
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=7.9e-05 Score=91.17 Aligned_cols=199 Identities=11% Similarity=0.100 Sum_probs=113.2
Q ss_pred CCccccccHHHHHHHHHHHHcCCC-eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000518 136 EGHEFIESRESILNDILDALRGPY-VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 214 (1448)
..+..++|.+..++.|...+...+ ...+.++|+.|+||||+|+.+++..--....+. ..++.-...+.|...
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g 85 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQG 85 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcC
Confidence 345677898888888888887655 468889999999999999999987642111100 011111111122111
Q ss_pred hCCCCC-----CCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEecc-chhhhh
Q 000518 215 LGLNFC-----EESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRR-RDVLVS 282 (1448)
Q Consensus 215 l~~~~~-----~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~-~~v~~~ 282 (1448)
...+.. .....+.++.+.+.+. .+++-+||+|++... ..++.+...+........+|++|.+ ..+...
T Consensus 86 ~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 86 MHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHH
Confidence 110000 0011122222222221 256779999999765 3455555555433334555555544 444321
Q ss_pred cCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCCh-HHHHHHHHHh
Q 000518 283 EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP-IAILTVARTL 342 (1448)
Q Consensus 283 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~~~l 342 (1448)
.......+++++++.++....+.+.+...... -..+.++.|++.++|-+ .|+..+...+
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi~-id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD-YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 12234578999999999999888876432211 12456778899999865 5666665544
No 103
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.96 E-value=0.00013 Score=86.59 Aligned_cols=176 Identities=19% Similarity=0.199 Sum_probs=102.3
Q ss_pred CCCccccccHHHHHHHHHHHHc----C---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC
Q 000518 135 NEGHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT 201 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~ 201 (1448)
......+.|+++.+++|.+.+. . ...+-+.++|++|+|||++|+++++... ..| +.+..
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~--~~~-----~~v~~- 189 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--ATF-----IRVVG- 189 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC--CCE-----Eecch-
Confidence 3345578899999999888763 1 1245699999999999999999998765 223 22211
Q ss_pred cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCcc----------------chhhccCCCC--C
Q 000518 202 PDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL----------------DLERTGIPFG--D 263 (1448)
Q Consensus 202 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l~~~l~--~ 263 (1448)
.++..... + .....+..+.+......+.+|++||++... .+..+...+. .
T Consensus 190 ---~~l~~~~~---g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 ---SELVRKYI---G------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred ---HHHHHHhh---h------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 11111110 0 011223333333334567899999987531 1111111111 1
Q ss_pred CCCCcEEEEEeccchhhhhc----CcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCCh
Q 000518 264 VHRGCKILVTSRRRDVLVSE----MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP 332 (1448)
Q Consensus 264 ~~~gs~ilvTTR~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 332 (1448)
...+.+||.||........+ ......+.++..+.++..++|+.++.......+. -...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 23467788888754333221 1234578999999999999999887432222111 1346777777764
No 104
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00016 Score=90.24 Aligned_cols=180 Identities=13% Similarity=0.124 Sum_probs=111.9
Q ss_pred CccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHh---------------------ccCCcceEE
Q 000518 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAK---------------------EGRIFDEVV 194 (1448)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~---------------------~~~~f~~~~ 194 (1448)
....++|.+..++.|..++....+ ..+.++|+.|+||||+|+.+++... ...+|+. .
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~ 93 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-H 93 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-E
Confidence 456788999999999999886655 4588999999999999999988753 1123332 2
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEE
Q 000518 195 FAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV 272 (1448)
Q Consensus 195 wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv 272 (1448)
.++......+.++. +++.++.... + .+++-++|+|++... ..++.+...+.....++.+|+
T Consensus 94 ~ld~~~~~~vd~Ir-~li~~~~~~P---------------~-~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 94 ELDAASNNSVDDIR-NLIEQVRIPP---------------Q-IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred EecccccCCHHHHH-HHHHHHhhCc---------------c-cCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 23322222222222 2222211100 0 146668899998765 346666655554445566555
Q ss_pred -EeccchhhhhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHH
Q 000518 273 -TSRRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1448)
Q Consensus 273 -TTR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 335 (1448)
||+...+..........+++.++++++....+.+.+....... ..+.+..|++.++|-..-+
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i-~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA-EPEALNVIAQKADGGMRDA 219 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 5454544432233456799999999999999988774322211 1345788999999966543
No 105
>PRK09087 hypothetical protein; Validated
Probab=97.93 E-value=0.00011 Score=80.17 Aligned_cols=142 Identities=16% Similarity=0.076 Sum_probs=86.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHcc
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1448)
..+.+.|+|+.|+|||+|++.+++.... .+++.. .+..++. ..+.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~~--------------------~~~~-- 87 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDAA--------------------NAAA-- 87 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHHH--------------------Hhhh--
Confidence 3467999999999999999998876431 133221 1111111 1111
Q ss_pred CcEEEEEcCCCCcc-chhhccCCCCC-CCCCcEEEEEeccc---------hhhhhcCcccceEEeecCChHHHHHHHHHH
Q 000518 239 KKILVILDDIWTSL-DLERTGIPFGD-VHRGCKILVTSRRR---------DVLVSEMHCQNNYCVSVLNKEEAWSLFSKV 307 (1448)
Q Consensus 239 k~~LlVlDdv~~~~-~~~~l~~~l~~-~~~gs~ilvTTR~~---------~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 307 (1448)
.-+|++||+.... +-+.+...+.. ...|..||+|++.. .... .+.....+++++++.++-.++++++
T Consensus 88 -~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S-Rl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 88 -EGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS-RLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -cCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH-HHhCCceeecCCCCHHHHHHHHHHH
Confidence 1378889996431 11112221211 23467799988742 2222 2455678999999999999999998
Q ss_pred hCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000518 308 VGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1448)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 338 (1448)
+.... -.-.+++..-|++.+.|-.-++..+
T Consensus 166 ~~~~~-~~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 166 FADRQ-LYVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHcC-CCCCHHHHHHHHHHhhhhHHHHHHH
Confidence 85321 1222567788888888877666543
No 106
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00016 Score=89.72 Aligned_cols=198 Identities=11% Similarity=0.119 Sum_probs=116.1
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccCCcc--eEEEEEecCCcCHHHHHHHH
Q 000518 135 NEGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFD--EVVFAEVSQTPDLKRIRREI 211 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~--~~~wv~v~~~~~~~~~~~~i 211 (1448)
+..+..++|.+..++.|..++...++. .+.++|+.|+||||+|+.+++...-..... ...+- .+..-...+.|
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i 95 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAI 95 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHH
Confidence 445678899999999999988866544 789999999999999999998764111110 00000 01111112222
Q ss_pred HHHhCCCCC-----CCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEe-ccchh
Q 000518 212 ADQLGLNFC-----EESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS-RRRDV 279 (1448)
Q Consensus 212 ~~~l~~~~~-----~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTT-R~~~v 279 (1448)
...-..+.. .....+.++.+...+. .+++-++|+|++... ...+.+...+......+++|++| ....+
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 221111100 0112233334433332 146678999998765 34555555554444566665544 44444
Q ss_pred hhhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000518 280 LVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1448)
Q Consensus 280 ~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 337 (1448)
..........+++..++.++....+.+.+......- ..+....|++.++|-+.-+..
T Consensus 176 l~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i-~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 176 PVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV-EDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 332223346789999999999999988774322111 135677889999998865544
No 107
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.92 E-value=4e-05 Score=82.52 Aligned_cols=185 Identities=17% Similarity=0.156 Sum_probs=117.3
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEE-EEEecCCcCHHHHHHHHH-
Q 000518 135 NEGHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVV-FAEVSQTPDLKRIRREIA- 212 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~-wv~v~~~~~~~~~~~~i~- 212 (1448)
|.....+.|.+..+.-+...+.....+...++||+|+|||+-|+.++...--.+.|.+.+ =.++|....+.-+...+-
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~ 111 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKN 111 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcC
Confidence 455677889999999999888877788999999999999999999998875445565444 234444433221111110
Q ss_pred -HHhCCCCCCCChHHHHHHHHHHHH-ccCc-EEEEEcCCCCc--cchhhccCCCCCCCCCcE-EEEEeccchhhhhcCcc
Q 000518 213 -DQLGLNFCEESDSERIMMLCNRLK-REKK-ILVILDDIWTS--LDLERTGIPFGDVHRGCK-ILVTSRRRDVLVSEMHC 286 (1448)
Q Consensus 213 -~~l~~~~~~~~~~~~~~~l~~~l~-~~k~-~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~-ilvTTR~~~v~~~~~~~ 286 (1448)
.++..... +... .-++ -.+|||+++.. +.|.++..........++ |+||+--..+.......
T Consensus 112 fakl~~~~~------------~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SR 179 (346)
T KOG0989|consen 112 FAKLTVLLK------------RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSR 179 (346)
T ss_pred HHHHhhccc------------cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhh
Confidence 00000000 0000 0133 47889999876 679888776665555555 45554433333322223
Q ss_pred cceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCCh
Q 000518 287 QNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP 332 (1448)
Q Consensus 287 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 332 (1448)
...++.++|.+++...-++..+..+...-+ .+..+.|++.++|--
T Consensus 180 C~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 180 CQKFRFKKLKDEDIVDRLEKIASKEGVDID-DDALKLIAKISDGDL 224 (346)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcH
Confidence 457899999999999999998854332222 455778999998854
No 108
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.92 E-value=3.5e-05 Score=88.28 Aligned_cols=91 Identities=14% Similarity=0.164 Sum_probs=64.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC--cCHHHHHHHHHHHhCCCCCCCChHH---H----HHH
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT--PDLKRIRREIADQLGLNFCEESDSE---R----IMM 230 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~~~~~---~----~~~ 230 (1448)
-..++|+|++|+|||||++.+++....+ +|+..+||.+.+. .++.++++.+...+-....+..... . .+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 3578999999999999999999988744 8999999999866 7899999998544322211111111 1 111
Q ss_pred HHHHHHccCcEEEEEcCCCCc
Q 000518 231 LCNRLKREKKILVILDDIWTS 251 (1448)
Q Consensus 231 l~~~l~~~k~~LlVlDdv~~~ 251 (1448)
......++++++|++|++...
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHH
Confidence 222223589999999999654
No 109
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00022 Score=86.32 Aligned_cols=181 Identities=12% Similarity=0.096 Sum_probs=110.7
Q ss_pred CCccccccHHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccCC------------------cc-eEEE
Q 000518 136 EGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRI------------------FD-EVVF 195 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~~~~~~~~~~~------------------f~-~~~w 195 (1448)
.....++|.+..++.+...+...+.+ +..++|+.|+||||+|+.+++..--... +. .++.
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~e 90 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIE 90 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEE
Confidence 34667889999999999888766554 6689999999999999999887531110 10 1122
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcE
Q 000518 196 AEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCK 269 (1448)
Q Consensus 196 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 269 (1448)
+.......+.++ +.+..... .+++-++|+|++... +..+.+...+......++
T Consensus 91 ldaas~~gId~I---------------------Relie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~ 149 (535)
T PRK08451 91 MDAASNRGIDDI---------------------RELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVK 149 (535)
T ss_pred eccccccCHHHH---------------------HHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceE
Confidence 221111122222 22221111 146678999999765 344555444443345666
Q ss_pred EEEEeccc-hhhhhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000518 270 ILVTSRRR-DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1448)
Q Consensus 270 ilvTTR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 338 (1448)
+|++|.+. .+..........+++.+++.++....+.+.+......- ..+.++.|++.++|-+.-+...
T Consensus 150 FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i-~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 150 FILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY-EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHH
Confidence 66666543 22221122346889999999999999888774322221 2456788999999988555444
No 110
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.0002 Score=89.09 Aligned_cols=179 Identities=13% Similarity=0.159 Sum_probs=109.4
Q ss_pred CCccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCC-----------------cceEEEEE
Q 000518 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRI-----------------FDEVVFAE 197 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~~-----------------f~~~~wv~ 197 (1448)
.....++|.+..++.|..++...++ +.+.++|+.|+||||+|+.+++..--... ++ ++++.
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vieid 93 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-IIEMD 93 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EEEEe
Confidence 3466788999999999998876554 56789999999999999999876531110 00 01111
Q ss_pred ecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcE-E
Q 000518 198 VSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCK-I 270 (1448)
Q Consensus 198 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~-i 270 (1448)
.... ...+.++.+.+.+. .+++-++|+|++... ..+..+...+......+. |
T Consensus 94 aasn---------------------~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifI 152 (725)
T PRK07133 94 AASN---------------------NGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFI 152 (725)
T ss_pred cccc---------------------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEE
Confidence 1000 11223334443333 256779999998765 356666555443334444 4
Q ss_pred EEEeccchhhhhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000518 271 LVTSRRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1448)
Q Consensus 271 lvTTR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 337 (1448)
++||+...+..........+++.+++.++....+...+....... ..+.++.|++.++|-+.-+..
T Consensus 153 LaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i-d~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 153 LATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY-EKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred EEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 455555544432233346899999999999988887663221111 134577899999997654333
No 111
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00021 Score=85.31 Aligned_cols=180 Identities=12% Similarity=0.144 Sum_probs=104.7
Q ss_pred CCccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhcc------CCcceEE-EEEecCCcCHHHH
Q 000518 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEG------RIFDEVV-FAEVSQTPDLKRI 207 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~------~~f~~~~-wv~v~~~~~~~~~ 207 (1448)
.....++|.+..++.+.+.+..... +.+.++|+.|+||||+|+.+++..... ..|...+ -+......++.++
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i 93 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI 93 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH
Confidence 3456788999999999999876554 588999999999999999998876421 1121111 1111111111121
Q ss_pred HHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEe-ccchhhhhcC
Q 000518 208 RREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS-RRRDVLVSEM 284 (1448)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTT-R~~~v~~~~~ 284 (1448)
+++.+.+... .. .+++-++|+|++... ..++.+...+......+.+|++| +...+.....
T Consensus 94 -~~l~~~~~~~---------------p~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 94 -RNLIDQVRIP---------------PQ-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred -HHHHHHHhhc---------------cc-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH
Confidence 1222211100 00 145668999998754 23555544343333345555554 3333332112
Q ss_pred cccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChH
Q 000518 285 HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI 333 (1448)
Q Consensus 285 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 333 (1448)
.....+++.++++++....+...+...... -..+.+..+++.++|-+-
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~-i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIK-FEDDALHIIAQKADGALR 204 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhCCCCHH
Confidence 234578999999999998888876322111 114567788888988655
No 112
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00018 Score=89.24 Aligned_cols=197 Identities=15% Similarity=0.141 Sum_probs=112.8
Q ss_pred CCccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEE-ecCCcCHHHHHHHHHH
Q 000518 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAE-VSQTPDLKRIRREIAD 213 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~-v~~~~~~~~~~~~i~~ 213 (1448)
.....++|.+..+..|..++..+++ ..+.++|+.|+||||+|+.+++..--....+...|.. +...+..-...+.+..
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhc
Confidence 3466788999999999988876665 4588999999999999999998774222111111111 1111111122222221
Q ss_pred HhCCCC---C--CCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEE-Eeccchhhh
Q 000518 214 QLGLNF---C--EESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-TSRRRDVLV 281 (1448)
Q Consensus 214 ~l~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TTR~~~v~~ 281 (1448)
.-..+. + .....+.+..+.+.+. .+++-++|+|+++.. ...+.+...+......+.+|+ |++...+..
T Consensus 93 g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred cCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 111110 0 1111233444444442 256678999998765 345555555544334555554 444444433
Q ss_pred hcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChH
Q 000518 282 SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI 333 (1448)
Q Consensus 282 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 333 (1448)
........+++.+++.++....+.+.+...... -..+.++.|++.++|-.-
T Consensus 173 TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~-I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 173 TIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ-IDADALQLIARKAQGSMR 223 (620)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHH
Confidence 123345689999999999888887766321111 124567889999999654
No 113
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00016 Score=92.58 Aligned_cols=177 Identities=14% Similarity=0.090 Sum_probs=110.1
Q ss_pred CCccccccHHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccC----------------------Ccce
Q 000518 136 EGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGR----------------------IFDE 192 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~~~~~~~~~~----------------------~f~~ 192 (1448)
..+..++|.+..++.|..++...++. .+.++|+.|+||||+|+.+++...-.. ++|
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d- 90 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD- 90 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-
Confidence 34567889999999999998866654 688999999999999999998774111 111
Q ss_pred EEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHH----HccCcEEEEEcCCCCc--cchhhccCCCCCCCC
Q 000518 193 VVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRL----KREKKILVILDDIWTS--LDLERTGIPFGDVHR 266 (1448)
Q Consensus 193 ~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~ 266 (1448)
+++++-.....+ +.++.+.+.+ ..++.-++|||++... ..++.|...+..-..
T Consensus 91 v~eidaas~~~V---------------------d~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~ 149 (824)
T PRK07764 91 VTEIDAASHGGV---------------------DDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPE 149 (824)
T ss_pred EEEecccccCCH---------------------HHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCC
Confidence 122221111112 2222222221 1256678999999876 445556555554445
Q ss_pred CcEEEEEe-ccchhhhhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHH
Q 000518 267 GCKILVTS-RRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1448)
Q Consensus 267 gs~ilvTT-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 335 (1448)
.+.+|++| ....+..........|++..++.++....+.+.+..+.... -.+....|++.++|-+..+
T Consensus 150 ~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i-d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 150 HLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV-EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred CeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 66555555 44444332233456889999999999988888764322211 1345678899999987433
No 114
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00026 Score=85.47 Aligned_cols=179 Identities=13% Similarity=0.134 Sum_probs=106.5
Q ss_pred CCccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccC---------------------CcceE
Q 000518 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGR---------------------IFDEV 193 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~---------------------~f~~~ 193 (1448)
.....++|.+..++.+..++...++ ..+.++|+.|+||||+|+.+++..--.. +++ +
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-V 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-e
Confidence 3456788999999999999886655 5688999999999999999998763211 111 1
Q ss_pred EEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEE
Q 000518 194 VFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKIL 271 (1448)
Q Consensus 194 ~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~il 271 (1448)
+++.-.....+.++ +++.+.+. ..-..+++-++|+|++... ...+.+...+.....++.+|
T Consensus 93 ~~i~g~~~~gid~i-r~i~~~l~----------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~I 155 (451)
T PRK06305 93 LEIDGASHRGIEDI-RQINETVL----------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFF 155 (451)
T ss_pred EEeeccccCCHHHH-HHHHHHHH----------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEE
Confidence 11111111111111 11211111 0001256778999998654 33444544444434466666
Q ss_pred EEec-cchhhhhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChH
Q 000518 272 VTSR-RRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI 333 (1448)
Q Consensus 272 vTTR-~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 333 (1448)
++|. ...+..........+++.++++++....+.+.+...... ...+.+..|++.++|-+.
T Consensus 156 l~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~-i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 156 LATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE-TSREALLPIARAAQGSLR 217 (451)
T ss_pred EEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHH
Confidence 6553 333322112234578999999999988888776322111 124567889999999664
No 115
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=0.0005 Score=78.53 Aligned_cols=194 Identities=13% Similarity=0.088 Sum_probs=118.4
Q ss_pred CccccccHHHHHHHHHHHHc----CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHH
Q 000518 137 GHEFIESRESILNDILDALR----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIA 212 (1448)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 212 (1448)
.+..+.||+.+.+.+.+++. ....+.+-|.|-+|+|||.+...++.+......=-.++.+++..-.....++..|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 35678899999999888876 34567899999999999999999999876322212456777666567778888888
Q ss_pred HHh-CCCCCCCChHHHHHHHHHHHHccC-cEEEEEcCCCCcc--chhhccCCCC-CCCCCcEEEEEe---------ccch
Q 000518 213 DQL-GLNFCEESDSERIMMLCNRLKREK-KILVILDDIWTSL--DLERTGIPFG-DVHRGCKILVTS---------RRRD 278 (1448)
Q Consensus 213 ~~l-~~~~~~~~~~~~~~~l~~~l~~~k-~~LlVlDdv~~~~--~~~~l~~~l~-~~~~gs~ilvTT---------R~~~ 278 (1448)
..+ ..........+....+..+..+.+ -+|+|+|+++... .-..+...|. +.-+++|+|+.- |.-.
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 777 221111122344455566666554 6899999987652 1111111111 122456555422 1111
Q ss_pred hhhh-cCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCC
Q 000518 279 VLVS-EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGG 330 (1448)
Q Consensus 279 v~~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g 330 (1448)
-... ..-....+..+|.+.++-.++|..+.............++.+|+++.|
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa 360 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAA 360 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhcc
Confidence 1110 012245788899999999999999986443333333334445555544
No 116
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00028 Score=86.94 Aligned_cols=198 Identities=14% Similarity=0.078 Sum_probs=112.3
Q ss_pred CCccccccHHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000518 136 EGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 214 (1448)
..+..++|.+..++.|..++...++. .+.++|+.|+||||+|+.+++...-....+ + ..++.-...+.|...
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~~~ 82 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALAPN 82 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhhcc
Confidence 34667889999999999998876655 578999999999999999998754111000 0 000100111111110
Q ss_pred hC-------CCCCCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEE-Eeccchhh
Q 000518 215 LG-------LNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-TSRRRDVL 280 (1448)
Q Consensus 215 l~-------~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TTR~~~v~ 280 (1448)
-+ .+.......+.++.+.+.+. .+++-++|+|++... ...+.+...+........+|+ ||....+.
T Consensus 83 ~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 83 GPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhH
Confidence 00 00000011222223322221 256679999998765 345555555544344555554 55544444
Q ss_pred hhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChH-HHHHHHHH
Q 000518 281 VSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI-AILTVART 341 (1448)
Q Consensus 281 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~~~ 341 (1448)
.........+++.+++.++..+.+.+.+......- ..+....|++..+|-+. |+..+-.+
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i-~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV-DDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 32123356899999999999988888774322111 13456778899999774 44444333
No 117
>PF14516 AAA_35: AAA-like domain
Probab=97.84 E-value=0.00084 Score=78.16 Aligned_cols=201 Identities=17% Similarity=0.162 Sum_probs=120.0
Q ss_pred CccccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC-----cCHHHHHHHH
Q 000518 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-----PDLKRIRREI 211 (1448)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~-----~~~~~~~~~i 211 (1448)
+...++.|...-+++.+.+.+. -..+.|.|+-.+|||+|...+.+..+.. .| .++++++..- .+..+..+.+
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHHHH
Confidence 4455778887777788777653 3589999999999999999999988743 34 3456776542 2455545444
Q ss_pred ----HHHhCCCCCC--------CChHHHHHHHHHHHHc--cCcEEEEEcCCCCccc---h-hhccC----CCCC----CC
Q 000518 212 ----ADQLGLNFCE--------ESDSERIMMLCNRLKR--EKKILVILDDIWTSLD---L-ERTGI----PFGD----VH 265 (1448)
Q Consensus 212 ----~~~l~~~~~~--------~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~~---~-~~l~~----~l~~----~~ 265 (1448)
.++++....- .........+.+.+.. +++.+|++|+|+..-. + +.+.. .... ..
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 4555443110 0111222223333322 5899999999976521 1 11111 1110 00
Q ss_pred CCc-E-EEEE-eccchhhh---hcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHH
Q 000518 266 RGC-K-ILVT-SRRRDVLV---SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVA 339 (1448)
Q Consensus 266 ~gs-~-ilvT-TR~~~v~~---~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 339 (1448)
... + |++. |+.....+ +.......++|++++.+|...|..++-.. .. ....++|....||+|..+..++
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-~~----~~~~~~l~~~tgGhP~Lv~~~~ 240 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-FS----QEQLEQLMDWTGGHPYLVQKAC 240 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-CC----HHHHHHHHHHHCCCHHHHHHHH
Confidence 111 1 2222 22111111 12334557899999999999999876322 11 2238899999999999999999
Q ss_pred HHhcCC
Q 000518 340 RTLRNK 345 (1448)
Q Consensus 340 ~~l~~~ 345 (1448)
..+...
T Consensus 241 ~~l~~~ 246 (331)
T PF14516_consen 241 YLLVEE 246 (331)
T ss_pred HHHHHc
Confidence 999664
No 118
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00032 Score=88.03 Aligned_cols=195 Identities=10% Similarity=0.068 Sum_probs=113.6
Q ss_pred CccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000518 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1448)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 215 (1448)
....++|.+..++.|..++...++ ..+.++|+.|+||||+|+.+++...-..... -...++.....+.|....
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCC
Confidence 456788999999999888876554 4678999999999999999998764111000 001111222333333222
Q ss_pred CCCCC-----CCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEecc-chhhhhc
Q 000518 216 GLNFC-----EESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRR-RDVLVSE 283 (1448)
Q Consensus 216 ~~~~~-----~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~-~~v~~~~ 283 (1448)
..+.. .....+.++.+.+.+. .+++-++|+|++... +..+.+...+......+.+|++|.+ ..+....
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 21110 0111223333333322 146779999998755 3455555444433445666665543 3333211
Q ss_pred CcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000518 284 MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1448)
Q Consensus 284 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 338 (1448)
......+.+..++.++....+.+.+...... ...+.+..|++.++|.+..+...
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2234578888999999998888877432211 12456788999999988654443
No 119
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.78 E-value=0.0004 Score=76.63 Aligned_cols=188 Identities=16% Similarity=0.154 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHcC---CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCc----ceEEEEEecCCcCHHHHHHHHHHHhCC
Q 000518 145 ESILNDILDALRG---PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF----DEVVFAEVSQTPDLKRIRREIADQLGL 217 (1448)
Q Consensus 145 ~~~~~~l~~~L~~---~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f----~~~~wv~v~~~~~~~~~~~~i~~~l~~ 217 (1448)
.+.++++.+++.. ...+-+.|||..|+|||++++++....-....- -.|+.|.+....+...+...|+..++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 4556667776663 445789999999999999999999876432111 157778889999999999999999998
Q ss_pred CCCCCChHHH-HHHHHHHHHccCcEEEEEcCCCCcc--------chhhccCCCCCCCCCcEEEEEeccchhhhh----cC
Q 000518 218 NFCEESDSER-IMMLCNRLKREKKILVILDDIWTSL--------DLERTGIPFGDVHRGCKILVTSRRRDVLVS----EM 284 (1448)
Q Consensus 218 ~~~~~~~~~~-~~~l~~~l~~~k~~LlVlDdv~~~~--------~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~----~~ 284 (1448)
.......... .......++.-+--+||+|++.+.- +.-.....+.+.-.=+-|.|-|+...-+-. .-
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHH
Confidence 7654433333 3334455555577899999996641 111111222222334456666654432221 01
Q ss_pred cccceEEeecCCh-HHHHHHHHHHhC----CCCCCccHHHHHHHHHHHhCCCh
Q 000518 285 HCQNNYCVSVLNK-EEAWSLFSKVVG----NCVEDPDLQTVAIQVANECGGLP 332 (1448)
Q Consensus 285 ~~~~~~~l~~L~~-~e~~~Lf~~~~~----~~~~~~~~~~~~~~i~~~~~glP 332 (1448)
.....+.++.... +|...|+..... .....-...++++.|...++|+.
T Consensus 203 ~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 203 SRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI 255 (302)
T ss_pred hccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch
Confidence 1234566666654 444555443331 11222334678999999999976
No 120
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.77 E-value=0.00042 Score=83.68 Aligned_cols=166 Identities=16% Similarity=0.158 Sum_probs=102.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCc
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1448)
.-+.|+|..|+|||.|++++++.......-..+++++ ..++...+...++.. ........+.+. ..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~------~~~~~~~~~~~~--~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKT------HKEIEQFKNEIC--QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHh------hhHHHHHHHHhc--cC
Confidence 4689999999999999999999765322223444443 345666666555421 022333444443 44
Q ss_pred EEEEEcCCCCcc---ch-hhccCCCCC-CCCCcEEEEEeccch---------hhhhcCcccceEEeecCChHHHHHHHHH
Q 000518 241 ILVILDDIWTSL---DL-ERTGIPFGD-VHRGCKILVTSRRRD---------VLVSEMHCQNNYCVSVLNKEEAWSLFSK 306 (1448)
Q Consensus 241 ~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~ilvTTR~~~---------v~~~~~~~~~~~~l~~L~~~e~~~Lf~~ 306 (1448)
-+||+||+.... .+ +.+...+.. ...|..||+|+.... +.. .+...-.+.+++++.++-.+++++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S-R~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT-RFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH-HHhCCceeccCCcCHHHHHHHHHH
Confidence 588999996542 22 222222221 123457888866432 111 233455788999999999999999
Q ss_pred HhCCCCC-CccHHHHHHHHHHHhCCChHHHHHHHHH
Q 000518 307 VVGNCVE-DPDLQTVAIQVANECGGLPIAILTVART 341 (1448)
Q Consensus 307 ~~~~~~~-~~~~~~~~~~i~~~~~glPlai~~~~~~ 341 (1448)
++..... ..-.+++..-|++.++|.|..+.-+...
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 8843211 1233678889999999999877665543
No 121
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.76 E-value=0.00024 Score=91.99 Aligned_cols=159 Identities=16% Similarity=0.190 Sum_probs=93.5
Q ss_pred CCccccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCC---c-ceEEEEEecCCcCHHHHHHHH
Q 000518 136 EGHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRI---F-DEVVFAEVSQTPDLKRIRREI 211 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~---f-~~~~wv~v~~~~~~~~~~~~i 211 (1448)
.....++||+++++++++.|......-+.++|++|+|||++|+.++++...... + +..+|. + +...+..
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a-- 251 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLA-- 251 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhh--
Confidence 345678999999999999988665666789999999999999999998743221 1 334442 1 1111110
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCcc----------chhhccCCCCCCCCCc-EEEEEeccchh-
Q 000518 212 ADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL----------DLERTGIPFGDVHRGC-KILVTSRRRDV- 279 (1448)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs-~ilvTTR~~~v- 279 (1448)
...........+..+.+.+.+.++.+|++|++.... +...+..+.. ..|- ++|-+|...+.
T Consensus 252 -----~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l--~~g~i~~IgaTt~~e~~ 324 (731)
T TIGR02639 252 -----GTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL--SSGKLRCIGSTTYEEYK 324 (731)
T ss_pred -----hccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH--hCCCeEEEEecCHHHHH
Confidence 000001223344555555554568999999986331 1122222211 2333 44444443211
Q ss_pred ---h--hhcCcccceEEeecCChHHHHHHHHHHh
Q 000518 280 ---L--VSEMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1448)
Q Consensus 280 ---~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1448)
. .........+++++++.++..++++...
T Consensus 325 ~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 325 NHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1 0011223578999999999999998655
No 122
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.76 E-value=3.7e-07 Score=107.32 Aligned_cols=129 Identities=26% Similarity=0.305 Sum_probs=100.4
Q ss_pred CCceEEEecCCcCcccCccCCCCCCCCEEeccCCCCCCCcccCCCCCCCEEEcccCCCcccchh-hhccCccCEEeccCC
Q 000518 535 PKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPRE-IGELTQLKLLDLSNC 613 (1448)
Q Consensus 535 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~Ls~~~l~~LP~~-i~~L~~L~~L~Ls~~ 613 (1448)
..|.+-++++|.+..+-.++.-++.|+.|||++|++.....+..|.+|.+|||++|.+..+|.- ...+. |+.|++++|
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 3567778888888877778888889999999999988888888999999999999988888753 33333 899999887
Q ss_pred CCCCccCccccCCCCCCCEEEeeCCCccccccccccccCCcChhhcCCCCCCCEEEeecCCCcC
Q 000518 614 SKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVI 677 (1448)
Q Consensus 614 ~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 677 (1448)
. ++.+-. +.+|++|+.|+++.|-+. +...+..|..|..|+.|.+.+|.+..
T Consensus 243 ~-l~tL~g--ie~LksL~~LDlsyNll~----------~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 243 A-LTTLRG--IENLKSLYGLDLSYNLLS----------EHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred H-HHhhhh--HHhhhhhhccchhHhhhh----------cchhhhHHHHHHHHHHHhhcCCcccc
Confidence 6 777765 788999999999888765 12334556666778888888887643
No 123
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=1.5e-06 Score=91.97 Aligned_cols=186 Identities=21% Similarity=0.149 Sum_probs=95.6
Q ss_pred ccceeeeecCcccccccccCCCccccccccEEEEecCCCCcccHHHHhhcCCccEEEEE-ecceeEeecchhhhhhcccc
Q 000518 1072 SHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPICFLQYFKNLEKLELR-WSSYKQIFSYKEAEKHAGKL 1150 (1448)
Q Consensus 1072 ~~L~~L~l~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~-c~~l~~~~~~~~~~~~~~~l 1150 (1448)
+.|+.|++++..++.-.-.. -...+.+|+.|.|.+..++.--...+..-.+|+.|+|+ |+++++.
T Consensus 185 sRlq~lDLS~s~it~stl~~-iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n------------- 250 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHG-ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN------------- 250 (419)
T ss_pred hhhHHhhcchhheeHHHHHH-HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh-------------
Confidence 35778888775544321111 11125556666666666544444444444555555555 5554432
Q ss_pred ccccEEEcCCCCCCchhhccCCcchhhhcccceeEEeccCCccccCCC-C-cccCcccEEEEecCCCC-ccccchhhhhc
Q 000518 1151 THIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVPS-S-PSFRNLITLEVWYCKGL-KNLVTSSTAKS 1227 (1448)
Q Consensus 1151 ~~L~~L~l~~c~~L~~l~~~~~~~~~~l~sL~~L~i~~C~~L~~l~~~-~-~~l~sL~~L~I~~C~~L-~~l~~~~~~~~ 1227 (1448)
.. .-.+.+|+.|.+|+|++|.-.+..... + .--+.|+.|++++|.+- ..--.......
T Consensus 251 -----------------~~--~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r 311 (419)
T KOG2120|consen 251 -----------------AL--QLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR 311 (419)
T ss_pred -----------------HH--HHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence 10 112345556666666666543221100 0 11245677777776531 11112344567
Q ss_pred cccccEEEEecccccchhccccCcccccccccccccccccccccccceecCCcccccCCCcceEEeccCC
Q 000518 1228 LVQLMQLRIDGCKMITEIISNEGDVAEDEIVFSKLKWLSLENLESLTSFYSGNYTFKFPCLEDLFVIECP 1297 (1448)
Q Consensus 1228 l~~L~~L~I~~C~~l~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I~~Cp 1297 (1448)
+++|..|++++|-.++.-.. .....|+.|++|.++.|-.+----. ......|+|.+|+|.+|-
T Consensus 312 cp~l~~LDLSD~v~l~~~~~------~~~~kf~~L~~lSlsRCY~i~p~~~-~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCF------QEFFKFNYLQHLSLSRCYDIIPETL-LELNSKPSLVYLDVFGCV 374 (419)
T ss_pred CCceeeeccccccccCchHH------HHHHhcchheeeehhhhcCCChHHe-eeeccCcceEEEEecccc
Confidence 77777777777776654221 1233577888888888865421000 011255888999998884
No 124
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00074 Score=82.13 Aligned_cols=181 Identities=12% Similarity=0.090 Sum_probs=107.2
Q ss_pred CCccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccC-------------------CcceEEE
Q 000518 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGR-------------------IFDEVVF 195 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~-------------------~f~~~~w 195 (1448)
.....++|.+..+..+..++....+ +.+.++|+.|+||||+|+.++....-.. .|..+++
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~e 92 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIE 92 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEE
Confidence 3456788999999999999876544 4667899999999999999998753100 0111222
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcE
Q 000518 196 AEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCK 269 (1448)
Q Consensus 196 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 269 (1448)
++...+.. .+.++.+.+.+. .+++-++|+|++... ...+.+...+........
T Consensus 93 idaas~~g---------------------vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 93 IDAASNRG---------------------IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred EeCccCCC---------------------HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 22211111 122222222222 256779999998755 344555444443334455
Q ss_pred EEEEe-ccchhhhhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000518 270 ILVTS-RRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1448)
Q Consensus 270 ilvTT-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 338 (1448)
+|++| +...+..........+++.+++.++....+.+++....... -.+.+..|++.++|.+..+...
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i-d~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY-EEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 55544 43333321122345789999999999988888763221111 1345678888999977544443
No 125
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.75 E-value=0.00027 Score=84.09 Aligned_cols=173 Identities=17% Similarity=0.197 Sum_probs=99.7
Q ss_pred CccccccHHHHHHHHHHHHc----C---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcC
Q 000518 137 GHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1448)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 203 (1448)
....+.|+++.++++.+.+. . ...+-|.++|++|+|||++|+++++... .. |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~--~~-----~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--AT-----FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC--CC-----EEEeeh---
Confidence 44567899999888887653 1 2345789999999999999999998764 22 233221
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCcc------------c-hhhccC---CCC--CCC
Q 000518 204 LKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL------------D-LERTGI---PFG--DVH 265 (1448)
Q Consensus 204 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~-~~~l~~---~l~--~~~ 265 (1448)
.++.... . . .....+..+........+.+|+|||++... . ...+.. .+. ...
T Consensus 199 -~~l~~~~---~-----g-~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 -SELVQKF---I-----G-EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred -HHHhHhh---c-----c-chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 1111111 0 0 112233334444444567899999987531 0 111111 111 112
Q ss_pred CCcEEEEEeccchhhhhcC----cccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCC
Q 000518 266 RGCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGL 331 (1448)
Q Consensus 266 ~gs~ilvTTR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 331 (1448)
.+.+||.||........++ .....+.++..+.++-.++|+.+........+. ....+++.+.|.
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~ 336 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGA 336 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCC
Confidence 3567777776554333211 224579999999999999999887532211111 134566666664
No 126
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.74 E-value=0.00027 Score=78.12 Aligned_cols=164 Identities=12% Similarity=0.075 Sum_probs=93.1
Q ss_pred HHHHHHHHHc-CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChH
Q 000518 147 ILNDILDALR-GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDS 225 (1448)
Q Consensus 147 ~~~~l~~~L~-~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~ 225 (1448)
.+..+.++.. ....+.+.|+|..|+|||+||+.+++...... ..+++++...... . +
T Consensus 28 ~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~--~~~~~i~~~~~~~------~----~---------- 85 (227)
T PRK08903 28 LVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG--RNARYLDAASPLL------A----F---------- 85 (227)
T ss_pred HHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEehHHhHH------H----H----------
Confidence 3444445443 23446789999999999999999999864221 1334444322110 0 0
Q ss_pred HHHHHHHHHHHccCcEEEEEcCCCCccch--hhccCCCCC-CCCCc-EEEEEeccchhhhh-------cCcccceEEeec
Q 000518 226 ERIMMLCNRLKREKKILVILDDIWTSLDL--ERTGIPFGD-VHRGC-KILVTSRRRDVLVS-------EMHCQNNYCVSV 294 (1448)
Q Consensus 226 ~~~~~l~~~l~~~k~~LlVlDdv~~~~~~--~~l~~~l~~-~~~gs-~ilvTTR~~~v~~~-------~~~~~~~~~l~~ 294 (1448)
... .+.-+||+||+.....+ ..+...+.. ...|. .||+|++....... .+.....+++++
T Consensus 86 -------~~~--~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~p 156 (227)
T PRK08903 86 -------DFD--PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKP 156 (227)
T ss_pred -------hhc--ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecC
Confidence 001 23447889999754321 222222211 12333 46666664332110 112236889999
Q ss_pred CChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHHHHh
Q 000518 295 LNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTL 342 (1448)
Q Consensus 295 L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 342 (1448)
+++++-..++.+.+..... .-.+++.+.+++...|.+..+..+-..+
T Consensus 157 l~~~~~~~~l~~~~~~~~v-~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 157 LSDADKIAALKAAAAERGL-QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9998877777765522111 1124567788889999998877666554
No 127
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00066 Score=84.89 Aligned_cols=197 Identities=14% Similarity=0.099 Sum_probs=114.4
Q ss_pred CCccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000518 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 214 (1448)
.....++|.+..+..|..++...++ +.+.++|+.|+||||+|+.+++..--.. .+... ...+..-+..+.+...
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~-~~~~~----~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLN-SDKPT----PEPCGKCELCRAIAAG 87 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCC-cCCCC----CCCCcccHHHHHHhcC
Confidence 3456788999999999998886543 6788999999999999999998864211 11000 0112222333333322
Q ss_pred hCCCC-----CCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEE-Eeccchhhhh
Q 000518 215 LGLNF-----CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-TSRRRDVLVS 282 (1448)
Q Consensus 215 l~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TTR~~~v~~~ 282 (1448)
...+. ......+.++.+...+. .+++-++|+|++... +.++.+...+......+.+|+ |+....+...
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 22111 01122233444443332 246678999999865 345666555543334455554 4433333321
Q ss_pred cCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000518 283 EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1448)
Q Consensus 283 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 338 (1448)
.......+++..++.++....+.+.+......- ..+.+..|++.++|-+..+...
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i-s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI-EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 122345788889999998888887764322111 1345778999999987654443
No 128
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.72 E-value=2.7e-06 Score=100.23 Aligned_cols=102 Identities=24% Similarity=0.285 Sum_probs=79.3
Q ss_pred CCCEEeccCCCCCCC-cccCCCCCCCEEEcccCCCcccchhhhccCccCEEeccCCCCCCccCccccCCCCCCCEEEeeC
Q 000518 559 NLESLCLDQCILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGN 637 (1448)
Q Consensus 559 ~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~~ 637 (1448)
.|.+.+.++|.+..+ .++.-++.|+.|||++|++...- .+..|.+|+||||++|. +..+|.-....+. |+.|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecc
Confidence 456666677777666 67888899999999999988764 78889999999999987 8888864334444 99999998
Q ss_pred CCccccccccccccCCcChhhcCCCCCCCEEEeecCCCc
Q 000518 638 TSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAV 676 (1448)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 676 (1448)
|.++ .+..+.+|.+|+.|+++.|-+.
T Consensus 242 N~l~-------------tL~gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 242 NALT-------------TLRGIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred cHHH-------------hhhhHHhhhhhhccchhHhhhh
Confidence 8765 4567788888888988877554
No 129
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.72 E-value=0.00019 Score=83.83 Aligned_cols=149 Identities=13% Similarity=0.121 Sum_probs=87.0
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000518 135 NEGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 213 (1448)
|.....++|.+...+.+..++..... .++.++|++|+||||+|+.+++... . .+..++.+. ..... .++.+.
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~--~---~~~~i~~~~-~~~~~-i~~~l~ 89 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG--A---EVLFVNGSD-CRIDF-VRNRLT 89 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC--c---cceEeccCc-ccHHH-HHHHHH
Confidence 34566788999999999999876554 5677799999999999999998753 1 123344443 22221 111111
Q ss_pred HhCCCCCCCChHHHHHHHHHHHH-ccCcEEEEEcCCCCc---cchhhccCCCCCCCCCcEEEEEeccchhhhh-cCcccc
Q 000518 214 QLGLNFCEESDSERIMMLCNRLK-REKKILVILDDIWTS---LDLERTGIPFGDVHRGCKILVTSRRRDVLVS-EMHCQN 288 (1448)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~-~~~~~~ 288 (1448)
.+ ..... .+.+-+||+||+... +....+...+.....++++|+||........ ......
T Consensus 90 ~~----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 90 RF----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HH----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 11 00000 135668999999755 1222232223333457788888865432211 112234
Q ss_pred eEEeecCChHHHHHHHHH
Q 000518 289 NYCVSVLNKEEAWSLFSK 306 (1448)
Q Consensus 289 ~~~l~~L~~~e~~~Lf~~ 306 (1448)
.+.++..+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 677777788887766554
No 130
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.72 E-value=0.00021 Score=80.51 Aligned_cols=135 Identities=14% Similarity=0.182 Sum_probs=71.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHcc
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1448)
...-+.++|++|+||||+|+.+++.......-....++.++.. ++... . ..+. ...+..+ +.+.
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~~~----~----~g~~-~~~~~~~---~~~a 104 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLVGE----Y----IGHT-AQKTREV---IKKA 104 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhhhh----h----ccch-HHHHHHH---HHhc
Confidence 3457889999999999999999987642221111223333221 11111 0 1111 1112222 2222
Q ss_pred CcEEEEEcCCCCc----------cchhhccCCCCCCCCCcEEEEEeccchhhh------h-cCcccceEEeecCChHHHH
Q 000518 239 KKILVILDDIWTS----------LDLERTGIPFGDVHRGCKILVTSRRRDVLV------S-EMHCQNNYCVSVLNKEEAW 301 (1448)
Q Consensus 239 k~~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~------~-~~~~~~~~~l~~L~~~e~~ 301 (1448)
..-+|++|++... +..+.+...+........+|+++....... . .......+++++++.+|-.
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELM 184 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHH
Confidence 3458899999652 123333333333333345555554332210 0 0112346889999999999
Q ss_pred HHHHHHhC
Q 000518 302 SLFSKVVG 309 (1448)
Q Consensus 302 ~Lf~~~~~ 309 (1448)
+++++.+.
T Consensus 185 ~Il~~~~~ 192 (261)
T TIGR02881 185 EIAERMVK 192 (261)
T ss_pred HHHHHHHH
Confidence 99988874
No 131
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.71 E-value=4.2e-06 Score=101.33 Aligned_cols=105 Identities=30% Similarity=0.341 Sum_probs=46.4
Q ss_pred cCCCCceEEEecCCcCcccCccCCCCCCCCEEeccCCCCCCCcccCCCCCCCEEEcccCCCcccchhhhccCccCEEecc
Q 000518 532 AGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611 (1448)
Q Consensus 532 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls 611 (1448)
..+++|.+|++.+|.|..+...+..+.+|++|++++|.|+.+..+..+..|+.|++++|.|..++ .+..+++|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence 33444444444444444443334444444444444444444444444444444444444444432 23334444444444
Q ss_pred CCCCCCccCc-cccCCCCCCCEEEeeCCC
Q 000518 612 NCSKLKVIPP-NVISSLSQLEELYLGNTS 639 (1448)
Q Consensus 612 ~~~~l~~lp~-~~l~~L~~L~~L~l~~~~ 639 (1448)
+|. +..+.. . ...+.+|+.+++.+|.
T Consensus 171 ~n~-i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 171 YNR-IVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred cch-hhhhhhhh-hhhccchHHHhccCCc
Confidence 443 333332 1 1334444444444443
No 132
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.71 E-value=0.00044 Score=83.37 Aligned_cols=162 Identities=19% Similarity=0.242 Sum_probs=92.3
Q ss_pred CCccccccHHHHHHHHHHHHc----C---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccC---CcceEEEEEec
Q 000518 136 EGHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGR---IFDEVVFAEVS 199 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~---~f~~~~wv~v~ 199 (1448)
.....+.|.+..++++.+.+. . ...+-+.++|++|+|||++|+++++...... ......|+.+.
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEecc
Confidence 345667788888888887653 1 2345689999999999999999999875221 11233444443
Q ss_pred CCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHH----HHccCcEEEEEcCCCCcc---------c-----hhhccCCC
Q 000518 200 QTPDLKRIRREIADQLGLNFCEESDSERIMMLCNR----LKREKKILVILDDIWTSL---------D-----LERTGIPF 261 (1448)
Q Consensus 200 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~----l~~~k~~LlVlDdv~~~~---------~-----~~~l~~~l 261 (1448)
... +... ...+ ....+..+... ...+++++|+||+++... + ...+...+
T Consensus 259 ~~e----Ll~k--------yvGe-te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 259 GPE----LLNK--------YVGE-TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred chh----hccc--------ccch-HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 321 1100 0001 11112222222 223578999999997531 1 11222222
Q ss_pred CC--CCCCcEEEEEeccchhhhhcC----cccceEEeecCChHHHHHHHHHHhCC
Q 000518 262 GD--VHRGCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGN 310 (1448)
Q Consensus 262 ~~--~~~gs~ilvTTR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~ 310 (1448)
.. ...+..||.||-.....+.++ .....++++..+.++..++|+++...
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 21 123445555665444333222 22456899999999999999998754
No 133
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.68 E-value=0.00018 Score=78.18 Aligned_cols=161 Identities=20% Similarity=0.185 Sum_probs=93.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccC
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREK 239 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 239 (1448)
...+.|+|..|+|||.|.+++++.......=..+++++ ..+....+...+... ....+...+. .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~--------~~~~~~~~~~--~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG--------EIEEFKDRLR--S 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT--------SHHHHHHHHC--T
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc--------cchhhhhhhh--c
Confidence 44688999999999999999999876432223455653 445555565554321 1223344443 5
Q ss_pred cEEEEEcCCCCcc---chhh-ccCCCCC-CCCCcEEEEEeccchhh-hh-------cCcccceEEeecCChHHHHHHHHH
Q 000518 240 KILVILDDIWTSL---DLER-TGIPFGD-VHRGCKILVTSRRRDVL-VS-------EMHCQNNYCVSVLNKEEAWSLFSK 306 (1448)
Q Consensus 240 ~~LlVlDdv~~~~---~~~~-l~~~l~~-~~~gs~ilvTTR~~~v~-~~-------~~~~~~~~~l~~L~~~e~~~Lf~~ 306 (1448)
-=+|++||++... .|.. +...+.. ...|-+||+|++...-. .. .+...-.+++++.+.++-.+++++
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 5688999997652 2322 1111111 13466899999654221 10 234456899999999999999999
Q ss_pred HhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000518 307 VVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1448)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 337 (1448)
++...... -.+++++-|++.+.+..-.+..
T Consensus 178 ~a~~~~~~-l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 178 KAKERGIE-LPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHHTT---S-HHHHHHHHHHTTSSHHHHHH
T ss_pred HHHHhCCC-CcHHHHHHHHHhhcCCHHHHHH
Confidence 88422211 2356677788877765544433
No 134
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.00091 Score=83.12 Aligned_cols=193 Identities=12% Similarity=0.089 Sum_probs=110.6
Q ss_pred CCCccccccHHHHHHHHHHHHcCCC-eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000518 135 NEGHEFIESRESILNDILDALRGPY-VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 213 (1448)
|.....++|.+..++.+..++...+ .+.+.++|+.|+||||+|+.+++..--...-+ ...++.-...+.|..
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITN 84 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhc
Confidence 3456678999999999999987544 45678899999999999999987653111100 011111112222221
Q ss_pred HhCCCCC-----CCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEE-Eeccchhhh
Q 000518 214 QLGLNFC-----EESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-TSRRRDVLV 281 (1448)
Q Consensus 214 ~l~~~~~-----~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TTR~~~v~~ 281 (1448)
....+.. .....+.++.+..... .+++-++|+|++... ..+..+...+........+|+ ||....+..
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 1111100 0011233333433332 256778899999765 345555554443334444444 554444433
Q ss_pred hcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHH
Q 000518 282 SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1448)
Q Consensus 282 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 335 (1448)
........+++.+++.++....+.+.+......-+ .+.+..|++.++|-+..+
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~-~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE-DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 22223457888999999999888887742221111 355778888888877543
No 135
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.00093 Score=82.59 Aligned_cols=195 Identities=10% Similarity=0.083 Sum_probs=111.1
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000518 135 NEGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 213 (1448)
|.....++|.+..++.|..++...++ +.+.++|+.|+||||+|+.+++..--....+. ..+... ...++|..
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C----~~C~~i~~ 84 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGEC----SSCKSIDN 84 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccc----hHHHHHHc
Confidence 34566788999999999999876554 46889999999999999999987642111100 000000 00011111
Q ss_pred HhCCC-----CCCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEec-cchhhh
Q 000518 214 QLGLN-----FCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSR-RRDVLV 281 (1448)
Q Consensus 214 ~l~~~-----~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR-~~~v~~ 281 (1448)
.-..+ .......+.+..+.+.+. .+++-++|+|++... ..++.+...+......+.+|++|. ...+..
T Consensus 85 ~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 85 DNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred CCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHH
Confidence 00000 000011222222222211 256778999998765 356666666654445666665553 333332
Q ss_pred hcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000518 282 SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1448)
Q Consensus 282 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 337 (1448)
........+++.+++.++....+.+.+...... -..+.+..|++.++|-+..+..
T Consensus 165 tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~-id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK-YEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 112234578999999999988888776322111 1245677889999998754433
No 136
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.67 E-value=0.00012 Score=85.48 Aligned_cols=108 Identities=22% Similarity=0.294 Sum_probs=73.1
Q ss_pred cccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000518 139 EFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1448)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 218 (1448)
..+++.+..++.++..|... +.|.++|++|+|||++|+.+++.......|+.+.||.+.+..+..+++..+.-. +..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCC
Confidence 34667788889999888743 468889999999999999999988655678899999999999877766433110 111
Q ss_pred CCCCChHHHHHHHHHHHHc--cCcEEEEEcCCCCc
Q 000518 219 FCEESDSERIMMLCNRLKR--EKKILVILDDIWTS 251 (1448)
Q Consensus 219 ~~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~ 251 (1448)
.. -......++.....+ +++++||+|++...
T Consensus 252 y~--~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 252 FR--RKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred eE--ecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 00 001111122222222 47899999998654
No 137
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=4.1e-06 Score=88.78 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=18.6
Q ss_pred ccceeEEEEeeCCCCCcCCCchhhcCCCCccEEeeccCcch
Q 000518 809 FSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNM 849 (1448)
Q Consensus 809 ~~~L~~L~L~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l 849 (1448)
.|+|..|++++|..++. ..+..+..++.|++|.++.|..+
T Consensus 312 cp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred CCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCC
Confidence 44555555555544443 12223334555555555555433
No 138
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.65 E-value=4.3e-05 Score=58.67 Aligned_cols=38 Identities=37% Similarity=0.579 Sum_probs=22.3
Q ss_pred CceEEEecCCcCcccCccCCCCCCCCEEeccCCCCCCC
Q 000518 536 KLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI 573 (1448)
Q Consensus 536 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l 573 (1448)
+|++|++++|.++.+|..+++|++|++|++++|.++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 56666666666666666566666666666666655544
No 139
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.64 E-value=0.00046 Score=89.83 Aligned_cols=181 Identities=14% Similarity=0.130 Sum_probs=101.5
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCC----cceEEE-EEecCCcCHHHHHH
Q 000518 135 NEGHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRI----FDEVVF-AEVSQTPDLKRIRR 209 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~----f~~~~w-v~v~~~~~~~~~~~ 209 (1448)
+.....++||+.++.++++.|......-+.++|++|+||||+|+.++++...... .+..+| +.++.-.
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~------- 255 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ------- 255 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh-------
Confidence 3456678999999999999988766667789999999999999999998743211 123333 2222100
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHHc-cCcEEEEEcCCCCcc---------chhhccCCCCCCCCC-cEEEEEeccch
Q 000518 210 EIADQLGLNFCEESDSERIMMLCNRLKR-EKKILVILDDIWTSL---------DLERTGIPFGDVHRG-CKILVTSRRRD 278 (1448)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~g-s~ilvTTR~~~ 278 (1448)
............+..+...+.+ +++.+|++|++.... +...+..+. -.+| -++|-||...+
T Consensus 256 ------ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~--l~~G~l~~IgaTT~~e 327 (852)
T TIGR03345 256 ------AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPA--LARGELRTIAATTWAE 327 (852)
T ss_pred ------cccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHH--hhCCCeEEEEecCHHH
Confidence 0000001111233333444432 578999999985431 111222222 2234 35555555422
Q ss_pred hhh------hcCcccceEEeecCChHHHHHHHHHHhCC---CCCCccHHHHHHHHHHHhCC
Q 000518 279 VLV------SEMHCQNNYCVSVLNKEEAWSLFSKVVGN---CVEDPDLQTVAIQVANECGG 330 (1448)
Q Consensus 279 v~~------~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~---~~~~~~~~~~~~~i~~~~~g 330 (1448)
... ........+.+++++.++..++++..... ...-.-..+....+++.+.+
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 110 01223458999999999999997655421 11111123445556665554
No 140
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.63 E-value=6.5e-06 Score=99.68 Aligned_cols=101 Identities=29% Similarity=0.361 Sum_probs=47.4
Q ss_pred CceEEEecCCcCcccCccCCCCCCCCEEeccCCCCCCCcc-cCCCCCCCEEEcccCCCcccchhhhccCccCEEeccCCC
Q 000518 536 KLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAI-IGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCS 614 (1448)
Q Consensus 536 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~-i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~ 614 (1448)
.+..+.+..|.+..+-..++.+++|.+|++.+|.|..+.. +..+.+|++|++++|.|+.+. .+..+..|+.|++++|.
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL 151 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc
Confidence 3333334444444433334445555555555555554433 455555555555555554442 34444445555555544
Q ss_pred CCCccCccccCCCCCCCEEEeeCCCc
Q 000518 615 KLKVIPPNVISSLSQLEELYLGNTSV 640 (1448)
Q Consensus 615 ~l~~lp~~~l~~L~~L~~L~l~~~~~ 640 (1448)
+..+.. +..+++|+.+++++|.+
T Consensus 152 -i~~~~~--~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 152 -ISDISG--LESLKSLKLLDLSYNRI 174 (414)
T ss_pred -chhccC--CccchhhhcccCCcchh
Confidence 444433 34445555555544443
No 141
>CHL00181 cbbX CbbX; Provisional
Probab=97.63 E-value=0.0011 Score=75.19 Aligned_cols=133 Identities=12% Similarity=0.135 Sum_probs=73.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCc
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1448)
..+.++|++|+||||+|+.+++.......-...-|+.++. .++.... .+ . .. .....+ +.+...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~~---~g-~----~~-~~~~~~---l~~a~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQY---IG-H----TA-PKTKEV---LKKAMG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHHH---hc-c----ch-HHHHHH---HHHccC
Confidence 3588999999999999999998764222211122454442 1222211 11 1 11 111222 222234
Q ss_pred EEEEEcCCCCc-----------cchhhccCCCCCCCCCcEEEEEeccchhhhh-------cCcccceEEeecCChHHHHH
Q 000518 241 ILVILDDIWTS-----------LDLERTGIPFGDVHRGCKILVTSRRRDVLVS-------EMHCQNNYCVSVLNKEEAWS 302 (1448)
Q Consensus 241 ~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~-------~~~~~~~~~l~~L~~~e~~~ 302 (1448)
-+|++|++... +....+...+.....+.+||+++........ .......+++++++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 58999998642 1223333333334455677777754332110 11234578999999999999
Q ss_pred HHHHHhC
Q 000518 303 LFSKVVG 309 (1448)
Q Consensus 303 Lf~~~~~ 309 (1448)
++...+.
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 9988873
No 142
>PRK05642 DNA replication initiation factor; Validated
Probab=97.61 E-value=0.00034 Score=77.11 Aligned_cols=152 Identities=14% Similarity=0.144 Sum_probs=91.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCc
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1448)
..+.|+|..|+|||.|++.+++....+ -..++|++..+ +... ...+.+.+.+ -
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~-----------------~~~~~~~~~~-~- 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR-----------------GPELLDNLEQ-Y- 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh-----------------hHHHHHhhhh-C-
Confidence 578999999999999999999876532 24566775432 2111 0122333332 2
Q ss_pred EEEEEcCCCCc---cchhh-ccCCCCC-CCCCcEEEEEeccchhhhh--------cCcccceEEeecCChHHHHHHHHHH
Q 000518 241 ILVILDDIWTS---LDLER-TGIPFGD-VHRGCKILVTSRRRDVLVS--------EMHCQNNYCVSVLNKEEAWSLFSKV 307 (1448)
Q Consensus 241 ~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~ilvTTR~~~v~~~--------~~~~~~~~~l~~L~~~e~~~Lf~~~ 307 (1448)
=+||+||+... ..|+. +...+.. ...|..||+|++.....-. .......+++++++.++-.+.++++
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 26889999643 34443 2222221 2346778888875432110 1223457889999999999999866
Q ss_pred hCCCCCCccHHHHHHHHHHHhCCChHHHHHHHH
Q 000518 308 VGNCVEDPDLQTVAIQVANECGGLPIAILTVAR 340 (1448)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~ 340 (1448)
+.... -.-.+++..-|++.+.|-.-++..+-.
T Consensus 179 a~~~~-~~l~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 179 ASRRG-LHLTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHcC-CCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 63211 112256777888888877655544433
No 143
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.60 E-value=0.0012 Score=75.07 Aligned_cols=132 Identities=11% Similarity=0.109 Sum_probs=73.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcE
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKI 241 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 241 (1448)
-+.++|++|+|||++|+.++............-|+.++. .++ ...+.+ .+. .....+ +.+-..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g----~~~-~~~~~~---~~~a~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIG----HTA-PKTKEI---LKRAMGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcc----cch-HHHHHH---HHHccCc
Confidence 588999999999999999888765322222222444442 122 221111 111 112222 2223446
Q ss_pred EEEEcCCCCc-----------cchhhccCCCCCCCCCcEEEEEeccchhhhh-------cCcccceEEeecCChHHHHHH
Q 000518 242 LVILDDIWTS-----------LDLERTGIPFGDVHRGCKILVTSRRRDVLVS-------EMHCQNNYCVSVLNKEEAWSL 303 (1448)
Q Consensus 242 LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~-------~~~~~~~~~l~~L~~~e~~~L 303 (1448)
+|+||++... +.++.+...+.....+.+||+++.....-.. .......+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899998632 1233333333334456677777653322110 011235789999999999999
Q ss_pred HHHHhC
Q 000518 304 FSKVVG 309 (1448)
Q Consensus 304 f~~~~~ 309 (1448)
+.+.+.
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 988773
No 144
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.60 E-value=0.00055 Score=89.76 Aligned_cols=158 Identities=15% Similarity=0.196 Sum_probs=93.5
Q ss_pred CccccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCC---c-ceEEEEEecCCcCHHHHHHHHH
Q 000518 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRI---F-DEVVFAEVSQTPDLKRIRREIA 212 (1448)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~---f-~~~~wv~v~~~~~~~~~~~~i~ 212 (1448)
....++||+++++++++.|......-+.++|++|+|||++|..++.+...... . +..+|. + +...++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~---- 247 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL---- 247 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----
Confidence 34568999999999999998665566789999999999999999988652211 1 234442 1 111111
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCcc---------chhhccCCCCCCCCC-cEEEEEeccchhhh-
Q 000518 213 DQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL---------DLERTGIPFGDVHRG-CKILVTSRRRDVLV- 281 (1448)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~g-s~ilvTTR~~~v~~- 281 (1448)
.+........+.+..+.+.+.+.++.+|++|++.... +...+..+.. .+| -++|.+|.......
T Consensus 248 ---ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l--~rg~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 248 ---AGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPAL--ARGELQCIGATTLDEYRKH 322 (821)
T ss_pred ---ccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHH--hCCCcEEEEeCCHHHHHHH
Confidence 1111111223345555666655678999999985321 1222222221 123 35555555443211
Q ss_pred -----hcCcccceEEeecCChHHHHHHHHHHh
Q 000518 282 -----SEMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1448)
Q Consensus 282 -----~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1448)
........+.++..+.++...+++...
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHHH
Confidence 012234567888889999888876543
No 145
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.58 E-value=5.9e-06 Score=103.46 Aligned_cols=95 Identities=17% Similarity=0.177 Sum_probs=43.7
Q ss_pred cccccEEEEcccCCccccccchhhhhccccceEEEecc-cccceeecccccccccceeecCccceecccCCCccceecCC
Q 000518 939 IQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICHC-TVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPG 1017 (1448)
Q Consensus 939 l~~L~~L~l~~C~~L~~l~~~~~l~~l~~L~~L~I~~C-~~L~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~ 1017 (1448)
++.|+.|.+.+|..+........+..++.|++|++.+| ......... .......+++|+.|.+..|..+++....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL----LLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH----hhhhhhhcCCcCccchhhhhccCchhHH
Confidence 45555555656655554221234455566666666653 211111000 0011223455556666665554443332
Q ss_pred cccccCCCcceEEeccCCce
Q 000518 1018 IHTLEWPLLKRLEVYGCNKV 1037 (1448)
Q Consensus 1018 ~~~~~~~sL~~L~i~~C~~L 1037 (1448)
.....|++|+.|.+.+|..+
T Consensus 263 ~l~~~c~~L~~L~l~~c~~l 282 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNL 282 (482)
T ss_pred HHHhhCCCcceEccCCCCcc
Confidence 22333556666666666553
No 146
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.00061 Score=85.08 Aligned_cols=195 Identities=12% Similarity=0.123 Sum_probs=109.6
Q ss_pred CCccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000518 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 214 (1448)
.....++|.+..+..|..++...++ ..+.++|+.|+||||+|+.+++..--....+ ...++.-...+.|...
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~~g 85 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEITEG 85 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHhcC
Confidence 4566789999999999998876655 4678999999999999999998753111110 0001111111111111
Q ss_pred hCCCC-----CCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEE-Eeccchhhhh
Q 000518 215 LGLNF-----CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-TSRRRDVLVS 282 (1448)
Q Consensus 215 l~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TTR~~~v~~~ 282 (1448)
-..+. ......+.++.+...+. .+++-++|+|++... ...+.+...+......+.+|+ ||....+...
T Consensus 86 ~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 86 RSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 00000 00011222333333322 245668999999765 344555544433334555554 5554544432
Q ss_pred cCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCCh-HHHHHH
Q 000518 283 EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP-IAILTV 338 (1448)
Q Consensus 283 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~ 338 (1448)
.......+++.+++.++....+...+......- ..+....|++.++|-. .|+..+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i-~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI-SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 233345788999999998888887664322111 1345778889998865 344443
No 147
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.58 E-value=1.7e-05 Score=86.64 Aligned_cols=89 Identities=19% Similarity=0.194 Sum_probs=40.7
Q ss_pred CCCCCEEEcccCCCc-----ccchhhhccCccCEEeccCCCCCCccCccc-------------cCCCCCCCEEEeeCCCc
Q 000518 579 LKNLEILSLCCSDIE-----QLPREIGELTQLKLLDLSNCSKLKVIPPNV-------------ISSLSQLEELYLGNTSV 640 (1448)
Q Consensus 579 L~~L~~L~Ls~~~l~-----~LP~~i~~L~~L~~L~Ls~~~~l~~lp~~~-------------l~~L~~L~~L~l~~~~~ 640 (1448)
.++|++||||.|.+. .+-.-|.+++.|++|.|.+|. ++..-... +++-++|+++...+|.+
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 335555555555433 111224455666666666554 32221111 33445666666666554
Q ss_pred cccccccccccCCcChhhcCCCCCCCEEEeecCCC
Q 000518 641 EWEFEGLNLERNNASLQELSILSHLTTLEIHIRDA 675 (1448)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 675 (1448)
.. .........++..+.|+.+.++.|.+
T Consensus 170 en-------~ga~~~A~~~~~~~~leevr~~qN~I 197 (382)
T KOG1909|consen 170 EN-------GGATALAEAFQSHPTLEEVRLSQNGI 197 (382)
T ss_pred cc-------ccHHHHHHHHHhccccceEEEecccc
Confidence 31 01112234455555666666655543
No 148
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.0083 Score=64.51 Aligned_cols=175 Identities=14% Similarity=0.075 Sum_probs=99.5
Q ss_pred CCCccccccHHHHHHHHHHHHc-----CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHH
Q 000518 135 NEGHEFIESRESILNDILDALR-----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 209 (1448)
|.....|+|.++.++++-=.+. +....-+.++|++|.||||||.-+++...+.-+ ++-.....-..-+.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k------~tsGp~leK~gDla 95 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK------ITSGPALEKPGDLA 95 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE------ecccccccChhhHH
Confidence 4567789999988888766554 345678999999999999999999999864311 11111111111112
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCcc-c--------hhhccCC-CCCCCCCcE----------
Q 000518 210 EIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL-D--------LERTGIP-FGDVHRGCK---------- 269 (1448)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-~--------~~~l~~~-l~~~~~gs~---------- 269 (1448)
.|+..+. +.=++.+|++.... . .+++..- ....++++|
T Consensus 96 aiLt~Le----------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 96 AILTNLE----------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred HHHhcCC----------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 2222221 33334445543220 0 0111000 001122222
Q ss_pred -EEEEeccchhhhhc-CcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000518 270 -ILVTSRRRDVLVSE-MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1448)
Q Consensus 270 -ilvTTR~~~v~~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 338 (1448)
|=.|||.-.+.+.. -......+++-.+.+|-.+...+.++.-.. .--++.+.+|+++..|-|.-..-+
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i-~i~~~~a~eIA~rSRGTPRIAnRL 223 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI-EIDEEAALEIARRSRGTPRIANRL 223 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC-CCChHHHHHHHHhccCCcHHHHHH
Confidence 33488865554421 112346788999999999999888742111 112456889999999999644433
No 149
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.53 E-value=0.0001 Score=56.55 Aligned_cols=39 Identities=41% Similarity=0.585 Sum_probs=24.0
Q ss_pred CCCEEEcccCCCcccchhhhccCccCEEeccCCCCCCccC
Q 000518 581 NLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIP 620 (1448)
Q Consensus 581 ~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp 620 (1448)
+|++|++++|.|+.+|..+++|++|++|++++|+ ++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 5666666666666666666667777777766665 55444
No 150
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.53 E-value=0.0019 Score=77.97 Aligned_cols=157 Identities=17% Similarity=0.167 Sum_probs=93.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCc
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1448)
..+.|+|+.|+|||.||+++++....+..=..+++++. .++..++...+... ....+.+.+. +.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~~~~~~~~--~~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN--------KMEEFKEKYR--SV 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC--------CHHHHHHHHH--hC
Confidence 46899999999999999999998763321134556643 33444454444321 1223334443 23
Q ss_pred EEEEEcCCCCcc---ch-hhccCCCCC-CCCCcEEEEEeccch---------hhhhcCcccceEEeecCChHHHHHHHHH
Q 000518 241 ILVILDDIWTSL---DL-ERTGIPFGD-VHRGCKILVTSRRRD---------VLVSEMHCQNNYCVSVLNKEEAWSLFSK 306 (1448)
Q Consensus 241 ~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~ilvTTR~~~---------v~~~~~~~~~~~~l~~L~~~e~~~Lf~~ 306 (1448)
-+|||||+.... .+ +.+...+.. ...|..||+|+.... +.. .+.....+++++.+.++-..++++
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S-Rl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS-RFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh-hccCCeEEEeCCCCHHHHHHHHHH
Confidence 488999997542 11 112211111 123556888776421 111 233345789999999999999999
Q ss_pred HhCCCCCCccHHHHHHHHHHHhCCChHHH
Q 000518 307 VVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1448)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~~~glPlai 335 (1448)
.+..... .-.+++...|++.+.|..-.+
T Consensus 280 ~~~~~~~-~l~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 280 KAEEEGL-ELPDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHcCC-CCCHHHHHHHHHhcCCCHHHH
Confidence 8853221 122567788888888876543
No 151
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.0017 Score=74.47 Aligned_cols=195 Identities=13% Similarity=0.067 Sum_probs=113.4
Q ss_pred ccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhcc--------------CCcceEEEEEecCCc
Q 000518 138 HEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEG--------------RIFDEVVFAEVSQTP 202 (1448)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~--------------~~f~~~~wv~v~~~~ 202 (1448)
...++|.+..++.+...+...++ +...++|+.|+||+++|..+++..--. .|-| ..|+.-....
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~ 81 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQH 81 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEeccccc
Confidence 34678999999999999886664 799999999999999999999875321 1112 2333211000
Q ss_pred CHHHHHHHHHHHhC--CCCCCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEe
Q 000518 203 DLKRIRREIADQLG--LNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS 274 (1448)
Q Consensus 203 ~~~~~~~~i~~~l~--~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTT 274 (1448)
+-..+-.+.+...+ .+....-..+.++.+.+.+. .+++-++|+|+++.. ...+.+...+-...++.-|++|+
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~ 161 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAP 161 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEEC
Confidence 00000011111111 01111112334555555544 257789999998765 34455544443223343444555
Q ss_pred ccchhhhhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000518 275 RRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1448)
Q Consensus 275 R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 337 (1448)
+...+..........+++.++++++..+.+.+......... ....++..++|-|..+..
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~~----~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNI----NFPELLALAQGSPGAAIA 220 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccchh----HHHHHHHHcCCCHHHHHH
Confidence 44444442233456899999999999999988653211111 135788999999976544
No 152
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.47 E-value=0.0032 Score=74.92 Aligned_cols=135 Identities=21% Similarity=0.226 Sum_probs=87.9
Q ss_pred cHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCCCCC
Q 000518 143 SRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLNFCE 221 (1448)
Q Consensus 143 gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~ 221 (1448)
.|.....++++.+..... ++.|.|+-++||||+++.+....... .+++...+.. +..++ .+..
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l-~d~~--------- 84 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIEL-LDLL--------- 84 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhH-HHHH---------
Confidence 455566677766653333 99999999999999997666655422 4555433322 11111 1111
Q ss_pred CChHHHHHHHHHHHHccCcEEEEEcCCCCccchhhccCCCCCCCCCcEEEEEeccchhhhh-----cCcccceEEeecCC
Q 000518 222 ESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVS-----EMHCQNNYCVSVLN 296 (1448)
Q Consensus 222 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~-----~~~~~~~~~l~~L~ 296 (1448)
..+.. +...++..|+||.|....+|......+.+.++. +|++|+-+...... ..|....+++-||+
T Consensus 85 -------~~~~~-~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 85 -------RAYIE-LKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred -------HHHHH-hhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 11111 111277899999999999999887777766666 89998877655443 23456688999999
Q ss_pred hHHHHH
Q 000518 297 KEEAWS 302 (1448)
Q Consensus 297 ~~e~~~ 302 (1448)
-.|-..
T Consensus 156 F~Efl~ 161 (398)
T COG1373 156 FREFLK 161 (398)
T ss_pred HHHHHh
Confidence 999865
No 153
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.46 E-value=0.0024 Score=75.58 Aligned_cols=175 Identities=15% Similarity=0.192 Sum_probs=99.2
Q ss_pred CCCccccccHHHHHHHHHHHHc----C---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC
Q 000518 135 NEGHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT 201 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~ 201 (1448)
......+.|.+..+++|.+.+. . ...+-+.++|++|+|||++|+.+++... ..| +.+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~--~~f-----i~i~~- 212 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT--ATF-----IRVVG- 212 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE-----EEEeh-
Confidence 3445567788877777776543 1 2346789999999999999999998764 222 22211
Q ss_pred cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCcc------------c----hhhccCCCC--C
Q 000518 202 PDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL------------D----LERTGIPFG--D 263 (1448)
Q Consensus 202 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~l~--~ 263 (1448)
..+.... ++ + ....+..+........+.+|++|+++... . +..+...+. .
T Consensus 213 ---s~l~~k~---~g-----e-~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 213 ---SEFVQKY---LG-----E-GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred ---HHHHHHh---cc-----h-hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 1111111 11 1 12233444444445678999999976420 0 111111111 1
Q ss_pred CCCCcEEEEEeccchhhhhc-C---cccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCC
Q 000518 264 VHRGCKILVTSRRRDVLVSE-M---HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGL 331 (1448)
Q Consensus 264 ~~~gs~ilvTTR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 331 (1448)
...+..||+||......+.+ . .-...+.++..+.++-.++|+.+........+. -..++++...|.
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~ 350 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKI 350 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCC
Confidence 23456788888766544331 1 234568898889999888998776432211111 134566666665
No 154
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.45 E-value=7.3e-05 Score=94.14 Aligned_cols=57 Identities=32% Similarity=0.504 Sum_probs=25.6
Q ss_pred CCCCCCEEeccCCCCCCCcccCCCCCCCEEEcccCCCcccc--hhhhccCccCEEeccC
Q 000518 556 HLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLP--REIGELTQLKLLDLSN 612 (1448)
Q Consensus 556 ~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~Ls~~~l~~LP--~~i~~L~~L~~L~Ls~ 612 (1448)
++++|+.||+++++++.+..+++|+||+.|.+.+=.+..-+ ..+-+|++|++||+|.
T Consensus 171 sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred ccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 44444444444444444444444555554444433333211 2344455555555544
No 155
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.45 E-value=0.0029 Score=72.99 Aligned_cols=167 Identities=12% Similarity=0.066 Sum_probs=92.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCC--------CCCChHHHHHHH
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNF--------CEESDSERIMML 231 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~--------~~~~~~~~~~~l 231 (1448)
...+.++|+.|+||||+|..+++..--....+. ..+..-...+.+...-..+. ...-..+.++.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l 94 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGG-------GACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVREL 94 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHH
Confidence 457889999999999999999987642110000 00000011111110000000 000122333344
Q ss_pred HHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEeccch-hhhhcCcccceEEeecCChHHHHHHH
Q 000518 232 CNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRRD-VLVSEMHCQNNYCVSVLNKEEAWSLF 304 (1448)
Q Consensus 232 ~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf 304 (1448)
.+.+. .+++-++|+|+++.. ...+.+...+.....++.+|+||.+.. +..........+.+.+++.+++.+.+
T Consensus 95 ~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L 174 (328)
T PRK05707 95 VSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWL 174 (328)
T ss_pred HHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHH
Confidence 33332 245666778999875 345555555544345677777776653 33222333557899999999999998
Q ss_pred HHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000518 305 SKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1448)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 338 (1448)
....+.. ..+.+..++..++|.|.....+
T Consensus 175 ~~~~~~~-----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 175 QQALPES-----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHhcccC-----ChHHHHHHHHHcCCCHHHHHHH
Confidence 7754211 1233567789999999755443
No 156
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.39 E-value=0.0037 Score=76.55 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=93.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccC
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREK 239 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 239 (1448)
..-+.|+|+.|+|||+||+++++....+..-..+++++.. ++..++...+... ....+.+.+. +
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~ 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN--------TMEEFKEKYR--S 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC--------cHHHHHHHHh--c
Confidence 3568999999999999999999998633212335555432 3333344433211 1123334443 3
Q ss_pred cEEEEEcCCCCcc---ch-hhccCCCCC-CCCCcEEEEEeccch--h-------hhhcCcccceEEeecCChHHHHHHHH
Q 000518 240 KILVILDDIWTSL---DL-ERTGIPFGD-VHRGCKILVTSRRRD--V-------LVSEMHCQNNYCVSVLNKEEAWSLFS 305 (1448)
Q Consensus 240 ~~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~ilvTTR~~~--v-------~~~~~~~~~~~~l~~L~~~e~~~Lf~ 305 (1448)
.-+||+||+.... .+ +.+...+.. ...|..||+|+.... + .. .+.....+++++.+.++-..+++
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S-Rl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS-RFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh-HhcCCeeEEecCCCHHHHHHHHH
Confidence 4489999996531 11 222221111 123455888776532 1 11 23344578999999999999999
Q ss_pred HHhCCCCCCccHHHHHHHHHHHhCCChHH
Q 000518 306 KVVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1448)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~i~~~~~glPla 334 (1448)
+.+.... ..-.+++...|++.++|-...
T Consensus 291 ~~~~~~~-~~l~~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 291 KKAEEEG-IDLPDEVLEFIAKNITSNVRE 318 (450)
T ss_pred HHHHHcC-CCCCHHHHHHHHcCcCCCHHH
Confidence 9885321 122256788888888887654
No 157
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.00012 Score=78.03 Aligned_cols=203 Identities=19% Similarity=0.178 Sum_probs=113.9
Q ss_pred cccccEEEEecCCCCcccH--HHHhhcCCccEEEEEecceeEeecchhhhhhccccccccEEEcCCCCCCchhhccCCcc
Q 000518 1097 FQNLKILEVVNDKSDNFPI--CFLQYFKNLEKLELRWSSYKQIFSYKEAEKHAGKLTHIKSLKLWELSDLMYLWNQGFKL 1174 (1448)
Q Consensus 1097 l~~L~~L~l~~c~~~~~~~--~~l~~l~~L~~L~i~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~ 1174 (1448)
...+++|++.+|.++.+.. ..+.++|.|+.|+|+||.+.+..... -.-..+|+.|.+.+- .|. |......
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l-----p~p~~nl~~lVLNgT-~L~--w~~~~s~ 141 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL-----PLPLKNLRVLVLNGT-GLS--WTQSTSS 141 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC-----cccccceEEEEEcCC-CCC--hhhhhhh
Confidence 4556666666666555543 45688888888888888877654311 013457788877662 110 1111223
Q ss_pred hhhhcccceeEEeccCCccccC---CCC-cccCcccEEEEecCCCCccccchhhhhccccccEEEEecccccchhccccC
Q 000518 1175 DSVVENLEMLEVWWCDNLVNLV---PSS-PSFRNLITLEVWYCKGLKNLVTSSTAKSLVQLMQLRIDGCKMITEIISNEG 1250 (1448)
Q Consensus 1175 ~~~l~sL~~L~i~~C~~L~~l~---~~~-~~l~sL~~L~I~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~~l~~~~~~~~ 1250 (1448)
+..+|.+++|++++.. +..+. .+. .--+.+++|+...|+-..........+..+++..+-+..|| +++.....+
T Consensus 142 l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~ 219 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKG 219 (418)
T ss_pred hhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhccc
Confidence 4556666777666531 10000 000 11235677777777644443333344566788888888887 454433222
Q ss_pred cccccccccccccccccccccccceecCCcccccCCCcceEEeccCCcccccCCCC------CCCCcceEE
Q 000518 1251 DVAEDEIVFSKLKWLSLENLESLTSFYSGNYTFKFPCLEDLFVIECPNMKIFSTRE------SNTPKLQEV 1315 (1448)
Q Consensus 1251 ~~~~~~~~~~sL~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I~~Cp~l~~lp~~~------~~~p~L~~~ 1315 (1448)
.-.+|++..|++.. .++-+...-.....||+|..|.+.+-|-...+.-+. .++++++.+
T Consensus 220 -----se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 220 -----SEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVL 284 (418)
T ss_pred -----CCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEe
Confidence 12577777777754 345444433334477888888888888776654322 445555554
No 158
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.38 E-value=9.6e-05 Score=93.08 Aligned_cols=125 Identities=22% Similarity=0.257 Sum_probs=86.8
Q ss_pred ccceEEEcccCCC--CCCCCCC--CCCCccEEEcCCCCCCCCCCchhhcCCCCceEEEecCCcCcccCccCCCCCCCCEE
Q 000518 488 KNCIAIFLHDINT--GELPEGL--EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESL 563 (1448)
Q Consensus 488 ~~~r~lsl~~~~~--~~lp~~~--~~~~L~~L~l~~n~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L 563 (1448)
.+++++.+.+... ..-|..+ .+|.|++|.+.+-.+...-....+.++++|+.||+++++++.+ ..+++|++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 3466777665321 1111111 5899999999886654333344568899999999999999988 789999999999
Q ss_pred eccCCCCCC---CcccCCCCCCCEEEcccCCCcccchh-------hhccCccCEEeccCC
Q 000518 564 CLDQCILGD---IAIIGNLKNLEILSLCCSDIEQLPRE-------IGELTQLKLLDLSNC 613 (1448)
Q Consensus 564 ~L~~~~i~~---l~~i~~L~~L~~L~Ls~~~l~~LP~~-------i~~L~~L~~L~Ls~~ 613 (1448)
.+.+=.+.. +..+.+|++|++||+|......-+.- -..|++||.||.|++
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 998876643 36788999999999997654433311 122556666665543
No 159
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.38 E-value=0.00095 Score=74.35 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=104.3
Q ss_pred cccccHHHHHHHHHHHHcCCC--e-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000518 139 EFIESRESILNDILDALRGPY--V-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1448)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~~~--~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 215 (1448)
..|.+|+..+..+..++.+.. . ..|-|.|-+|+|||.+.+++.+... -..+|+++-+.++.+.+...|+.+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHHHHHh
Confidence 357799999999999887432 3 3558999999999999999998773 2358999999999999999999998
Q ss_pred C-CCCCCCC---hHHHHHHHHHHHHc-------cCcEEEEEcCCCCccchhhccCCC----C--CCCCCcEEEEEeccch
Q 000518 216 G-LNFCEES---DSERIMMLCNRLKR-------EKKILVILDDIWTSLDLERTGIPF----G--DVHRGCKILVTSRRRD 278 (1448)
Q Consensus 216 ~-~~~~~~~---~~~~~~~l~~~l~~-------~k~~LlVlDdv~~~~~~~~l~~~l----~--~~~~gs~ilvTTR~~~ 278 (1448)
+ .+.+... ..+........+.+ ++.++||||+++...+.+++..+. . -..+ .-+|+++-...
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~-~i~iils~~~~ 159 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEP-TIVIILSAPSC 159 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCC-ceEEEEecccc
Confidence 5 2222211 11222233332322 468999999998765544321110 0 0122 23444443322
Q ss_pred hhhh--cCcccc--eEEeecCChHHHHHHHHH
Q 000518 279 VLVS--EMHCQN--NYCVSVLNKEEAWSLFSK 306 (1448)
Q Consensus 279 v~~~--~~~~~~--~~~l~~L~~~e~~~Lf~~ 306 (1448)
.... .++... ++..+.-+.+|...++.+
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 2211 244433 566778899999888865
No 160
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.37 E-value=0.007 Score=64.83 Aligned_cols=121 Identities=20% Similarity=0.231 Sum_probs=71.0
Q ss_pred CCCccccccHHHHHHHHHH----HHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHH
Q 000518 135 NEGHEFIESRESILNDILD----ALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~----~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 210 (1448)
+.....++|-+..++.|++ .+.+....-+.+||..|+|||++++++.+....+. .--|.|.+..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~~-------- 90 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKED-------- 90 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHHH--------
Confidence 3455667787777777765 34455667788999999999999999999886432 2223333221
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHH-ccCcEEEEEcCCCCc---cchhhccCCCCC---CCC-CcEEEEEeccchhhh
Q 000518 211 IADQLGLNFCEESDSERIMMLCNRLK-REKKILVILDDIWTS---LDLERTGIPFGD---VHR-GCKILVTSRRRDVLV 281 (1448)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~---~~~~~l~~~l~~---~~~-gs~ilvTTR~~~v~~ 281 (1448)
...+..+...+. ...||+|++||+.-. .....+...+.. ..+ +..|.+||-.++...
T Consensus 91 --------------L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 91 --------------LGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred --------------hccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 011122233333 368999999998644 234444444432 223 334444555455444
No 161
>CHL00176 ftsH cell division protein; Validated
Probab=97.35 E-value=0.0021 Score=80.45 Aligned_cols=171 Identities=20% Similarity=0.275 Sum_probs=95.7
Q ss_pred cccccHHHH---HHHHHHHHcCC---------CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHH
Q 000518 139 EFIESRESI---LNDILDALRGP---------YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKR 206 (1448)
Q Consensus 139 ~~~~gR~~~---~~~l~~~L~~~---------~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~ 206 (1448)
..+.|.++. +.++++.+.+. ..+-|.++|++|+|||++|+.++..... . |+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~--p-----~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV--P-----FFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC--C-----eeeccHH----H
Confidence 345555544 44455555422 1346899999999999999999987642 1 3333211 1
Q ss_pred HHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCcc----------------chhhccCCCC--CCCCCc
Q 000518 207 IRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL----------------DLERTGIPFG--DVHRGC 268 (1448)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l~~~l~--~~~~gs 268 (1448)
+.... .+ .....+..+.+......+++|++||++... .+..+...+. ....+.
T Consensus 252 f~~~~---~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FVEMF---VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHHHh---hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 11100 00 011233444555555788999999995431 1222222221 123455
Q ss_pred EEEEEeccchhhhhcC----cccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCC
Q 000518 269 KILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGL 331 (1448)
Q Consensus 269 ~ilvTTR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 331 (1448)
.||.||......+.++ .....+.++..+.++-.++++.++......+ ......+++.+.|.
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGF 387 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCC
Confidence 6777776654433211 2245788888899999999998886422221 22355677777773
No 162
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.35 E-value=0.002 Score=77.89 Aligned_cols=158 Identities=14% Similarity=0.157 Sum_probs=92.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCc
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1448)
.-+.|+|+.|+|||.||+++++.......-..++|++. .++..++...+... ......+.+. .+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~--------~~~~f~~~~~-~~~ 195 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG--------KLNEFREKYR-KKV 195 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc--------cHHHHHHHHH-hcC
Confidence 45999999999999999999998763221124566653 44555665555321 1122333332 245
Q ss_pred EEEEEcCCCCcc---ch-hhccCCCCC-CCCCcEEEEEec-cchhh----hh---cCcccceEEeecCChHHHHHHHHHH
Q 000518 241 ILVILDDIWTSL---DL-ERTGIPFGD-VHRGCKILVTSR-RRDVL----VS---EMHCQNNYCVSVLNKEEAWSLFSKV 307 (1448)
Q Consensus 241 ~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~ilvTTR-~~~v~----~~---~~~~~~~~~l~~L~~~e~~~Lf~~~ 307 (1448)
-+||+||+.... .+ +.+...+.. ...|..||+||. .+.-. .. .+.....+++++.+.+.-..++++.
T Consensus 196 dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 196 DVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred CEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHH
Confidence 589999997431 11 122211211 123456888875 22211 11 1233457889999999999999988
Q ss_pred hCCCCCCccHHHHHHHHHHHhCCChHH
Q 000518 308 VGNCVEDPDLQTVAIQVANECGGLPIA 334 (1448)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~~~glPla 334 (1448)
+..... .-.+++...|++.+.|....
T Consensus 276 ~~~~~~-~l~~ev~~~Ia~~~~~~~R~ 301 (440)
T PRK14088 276 LEIEHG-ELPEEVLNFVAENVDDNLRR 301 (440)
T ss_pred HHhcCC-CCCHHHHHHHHhccccCHHH
Confidence 853211 12256777888888775443
No 163
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.00011 Score=78.36 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=36.5
Q ss_pred ccccCeEeccccccccchhcccCCcccccceeEEEEeeCCCCCcCCCchhhcCCCCccEEeeccCcchhhhh
Q 000518 782 FPVLESMFLHNLIHLEKICDGLLTAEFFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIF 853 (1448)
Q Consensus 782 fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~ 853 (1448)
||++..+.+..++--..- ..-....||.+-.|.+.. .++.++.....+..+|+|..|.+.+.+-+..+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s--~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTES--SEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred cccchheeeecCcccchh--hcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 555555555544311110 011223345555555544 345555555566778888888888777665543
No 164
>PRK06620 hypothetical protein; Validated
Probab=97.33 E-value=0.00082 Score=72.67 Aligned_cols=135 Identities=16% Similarity=0.002 Sum_probs=78.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCc
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1448)
+.+.|+|+.|+|||+|++.+++... . .++. ..+.. . +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~------------------------~---~~~--~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN------------------------E---EIL--EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc------------------------h---hHH--hcC
Confidence 5699999999999999998876543 1 1111 00000 0 011 133
Q ss_pred EEEEEcCCCCccchhhccCCCCC-CCCCcEEEEEeccchhh---hh---cCcccceEEeecCChHHHHHHHHHHhCCCCC
Q 000518 241 ILVILDDIWTSLDLERTGIPFGD-VHRGCKILVTSRRRDVL---VS---EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVE 313 (1448)
Q Consensus 241 ~LlVlDdv~~~~~~~~l~~~l~~-~~~gs~ilvTTR~~~v~---~~---~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 313 (1448)
-+|++||+....+ ..+...+.. ...|..||+|++..... .. .+...-++++++++.++-..++++.+....
T Consensus 87 d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~- 164 (214)
T PRK06620 87 NAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS- 164 (214)
T ss_pred CEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC-
Confidence 5788899974321 111111110 13466899998754331 10 233445799999999998888888774221
Q ss_pred CccHHHHHHHHHHHhCCChHHH
Q 000518 314 DPDLQTVAIQVANECGGLPIAI 335 (1448)
Q Consensus 314 ~~~~~~~~~~i~~~~~glPlai 335 (1448)
-.-.+++.+-|++.+.|--..+
T Consensus 165 l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 165 VTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred CCCCHHHHHHHHHHccCCHHHH
Confidence 1122566777888877655433
No 165
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.32 E-value=0.00078 Score=83.50 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=42.0
Q ss_pred CCCccccccHHHHHHHHHHHHcC-----CCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 135 NEGHEFIESRESILNDILDALRG-----PYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
|.....++|.++.++++..++.. ...+++.|+|++|+||||+++.++....
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45567788999999999988873 2346799999999999999999998764
No 166
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.29 E-value=0.0016 Score=77.54 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=90.9
Q ss_pred CCccccccHHHHHHHHHHHHc----C---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc
Q 000518 136 EGHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP 202 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~ 202 (1448)
.....+.|.+..+++|.+.+. . ...+-+.++|++|+|||++|+.+++... ..| +.+...
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~--~~f-----i~V~~s- 251 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS--ATF-----LRVVGS- 251 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC--CCE-----EEEecc-
Confidence 344567788888888777653 1 2345688999999999999999999764 223 222111
Q ss_pred CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCcc------------c----hhhccCCCC--CC
Q 000518 203 DLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL------------D----LERTGIPFG--DV 264 (1448)
Q Consensus 203 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~l~--~~ 264 (1448)
++... . ..+ ....+..+.+....+.+.+|+||+++... . ...+...+. ..
T Consensus 252 ---eL~~k----~----~Ge-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 252 ---ELIQK----Y----LGD-GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred ---hhhhh----h----cch-HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 11111 0 000 11223344444444677899999975321 0 011111111 11
Q ss_pred CCCcEEEEEeccchhhhhcC----cccceEEeecCChHHHHHHHHHHhCC
Q 000518 265 HRGCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGN 310 (1448)
Q Consensus 265 ~~gs~ilvTTR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~ 310 (1448)
..+.+||+||......+.+. .....++++..+.++..++|..++..
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 23567888887655444321 23457899999999999999988753
No 167
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.29 E-value=0.0028 Score=83.48 Aligned_cols=159 Identities=17% Similarity=0.218 Sum_probs=92.2
Q ss_pred CCccccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCc----ceEEEEEecCCcCHHHHHHHH
Q 000518 136 EGHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF----DEVVFAEVSQTPDLKRIRREI 211 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f----~~~~wv~v~~~~~~~~~~~~i 211 (1448)
.....++||+.++.++++.|......-+.++|++|+|||++|..++.+....... ...+|.. +...+..
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~a-- 242 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALIA-- 242 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHhh--
Confidence 3456689999999999999986666667799999999999999999886432111 2233321 1111110
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHHc-cCcEEEEEcCCCCcc---------chhhccCCCCCCCCC-cEEEEEeccchhh
Q 000518 212 ADQLGLNFCEESDSERIMMLCNRLKR-EKKILVILDDIWTSL---------DLERTGIPFGDVHRG-CKILVTSRRRDVL 280 (1448)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~g-s~ilvTTR~~~v~ 280 (1448)
+... .......+..+...+.+ +++.+|++|++.... +...+..+.. ..| -++|.+|......
T Consensus 243 ----~~~~-~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 243 ----GAKY-RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEYR 315 (852)
T ss_pred ----cchh-hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHHH
Confidence 0000 01122334445555543 468999999986431 1222322322 233 3455444433321
Q ss_pred h-----h-cCcccceEEeecCChHHHHHHHHHHh
Q 000518 281 V-----S-EMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1448)
Q Consensus 281 ~-----~-~~~~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1448)
. . .......+.++..+.++...+++...
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1 0 11233468899999999999987664
No 168
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.29 E-value=0.0018 Score=84.78 Aligned_cols=158 Identities=16% Similarity=0.188 Sum_probs=90.6
Q ss_pred CCccccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCC----cceEE-EEEecCCcCHHHHHHH
Q 000518 136 EGHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRI----FDEVV-FAEVSQTPDLKRIRRE 210 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~----f~~~~-wv~v~~~~~~~~~~~~ 210 (1448)
.....++||+.++.++++.|......-+.++|++|+|||++|+.++.+...... .+..+ ++.++.- +.
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l------~a- 247 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------VA- 247 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh------hh-
Confidence 445678999999999999998766667889999999999999999988742211 12222 2222211 00
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHHc-cCcEEEEEcCCCCcc---------chhhccCCCCCCCCC-cEEEEEeccchh
Q 000518 211 IADQLGLNFCEESDSERIMMLCNRLKR-EKKILVILDDIWTSL---------DLERTGIPFGDVHRG-CKILVTSRRRDV 279 (1448)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~g-s~ilvTTR~~~v 279 (1448)
+.. ........+..+.+.+.+ +++.+|++|++.... +...+..|.. .+| -++|-||...+.
T Consensus 248 -----g~~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--~~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 248 -----GAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVGATTLDEY 319 (857)
T ss_pred -----ccc-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--hcCCCeEEEcCCCHHH
Confidence 000 001112233444444332 578999999986541 1223333322 233 355555444332
Q ss_pred h------hhcCcccceEEeecCChHHHHHHHHHHh
Q 000518 280 L------VSEMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1448)
Q Consensus 280 ~------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1448)
. .........+.+..-+.++...+++...
T Consensus 320 r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1 1011223356777778899999887654
No 169
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.26 E-value=0.00078 Score=85.86 Aligned_cols=159 Identities=15% Similarity=0.174 Sum_probs=93.0
Q ss_pred CccccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccC-C---cceEEEEEecCCcCHHHHHHHHH
Q 000518 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGR-I---FDEVVFAEVSQTPDLKRIRREIA 212 (1448)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~-~---f~~~~wv~v~~~~~~~~~~~~i~ 212 (1448)
....++||+++++++++.|......-+.++|++|+|||++|+.++....... . .+..+|.. +...+ +
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----l 254 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----L 254 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----h
Confidence 3456899999999999998865445567899999999999999998764221 1 23444421 11111 1
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc----------cchhhccCCCCCCCCCcEEEEEeccchhhh-
Q 000518 213 DQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS----------LDLERTGIPFGDVHRGCKILVTSRRRDVLV- 281 (1448)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~- 281 (1448)
............+..+.+.+.+.++.+|++|++... .+...+..++... ..-+||-+|...+...
T Consensus 255 ---aG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~~~ 330 (758)
T PRK11034 255 ---AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNI 330 (758)
T ss_pred ---cccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHHHH
Confidence 111111122334445555565567789999998643 1222222222211 1234555444333211
Q ss_pred ----h-cCcccceEEeecCChHHHHHHHHHHh
Q 000518 282 ----S-EMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1448)
Q Consensus 282 ----~-~~~~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1448)
. .......+.+++.+.++..++++...
T Consensus 331 ~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 0 11223579999999999999998765
No 170
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.24 E-value=0.00087 Score=66.85 Aligned_cols=69 Identities=20% Similarity=0.240 Sum_probs=42.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccC-cE
Q 000518 163 IGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREK-KI 241 (1448)
Q Consensus 163 i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k-~~ 241 (1448)
|.|+|+.|+||||+|+.+++.... .++.++.+.-.+. ........+..+.+...+.. +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccccc---------------cccccccccccccccccccccce
Confidence 579999999999999999999751 1233433221100 11112233344444444344 89
Q ss_pred EEEEcCCCCc
Q 000518 242 LVILDDIWTS 251 (1448)
Q Consensus 242 LlVlDdv~~~ 251 (1448)
+|++||++..
T Consensus 61 vl~iDe~d~l 70 (132)
T PF00004_consen 61 VLFIDEIDKL 70 (132)
T ss_dssp EEEEETGGGT
T ss_pred eeeeccchhc
Confidence 9999998654
No 171
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.24 E-value=0.0048 Score=75.53 Aligned_cols=156 Identities=15% Similarity=0.090 Sum_probs=92.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCc
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1448)
..+.|+|..|+|||.|++++++.......--.+++++ ..++..++...+... ..+.+.+++. +-
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~~--------~~~~f~~~y~--~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRDG--------KGDSFRRRYR--EM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHhc--------cHHHHHHHhh--cC
Confidence 4589999999999999999999876322123445554 334444444433211 1122333333 33
Q ss_pred EEEEEcCCCCc---cchhh-ccCCCCC-CCCCcEEEEEeccch---------hhhhcCcccceEEeecCChHHHHHHHHH
Q 000518 241 ILVILDDIWTS---LDLER-TGIPFGD-VHRGCKILVTSRRRD---------VLVSEMHCQNNYCVSVLNKEEAWSLFSK 306 (1448)
Q Consensus 241 ~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~ilvTTR~~~---------v~~~~~~~~~~~~l~~L~~~e~~~Lf~~ 306 (1448)
=+|||||+... +.|.. |...+.. ...|..|||||+... +.. .+...-.+++.+.+.+.-..++++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S-Rf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN-RFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh-hhhcCceEEcCCCCHHHHHHHHHH
Confidence 57889999755 22222 2222211 123556888887531 112 244566889999999999999999
Q ss_pred HhCCCCCCccHHHHHHHHHHHhCCChHH
Q 000518 307 VVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1448)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~~~glPla 334 (1448)
++..... .-.++++.-|++.+.+..-.
T Consensus 458 ka~~r~l-~l~~eVi~yLa~r~~rnvR~ 484 (617)
T PRK14086 458 KAVQEQL-NAPPEVLEFIASRISRNIRE 484 (617)
T ss_pred HHHhcCC-CCCHHHHHHHHHhccCCHHH
Confidence 8843221 12256677777777665433
No 172
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.23 E-value=0.00087 Score=67.80 Aligned_cols=89 Identities=22% Similarity=0.186 Sum_probs=51.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCc
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1448)
..+.|+|++|+||||+|+.++....... ..++++..+........... ...........................+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999998876322 24555555444332222111 11111111122233334444444443345
Q ss_pred EEEEEcCCCCcc
Q 000518 241 ILVILDDIWTSL 252 (1448)
Q Consensus 241 ~LlVlDdv~~~~ 252 (1448)
.+|++|+++...
T Consensus 80 ~viiiDei~~~~ 91 (148)
T smart00382 80 DVLILDEITSLL 91 (148)
T ss_pred CEEEEECCcccC
Confidence 999999998774
No 173
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0035 Score=75.79 Aligned_cols=156 Identities=17% Similarity=0.152 Sum_probs=92.3
Q ss_pred cccHHHHHHHHHHHHc------CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000518 141 IESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1448)
Q Consensus 141 ~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 214 (1448)
-+|-++.+++|++.|. +-+-+++++|||+|+|||.|++.+++... +.| +-+++..-.|..+|..-
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~--Rkf---vR~sLGGvrDEAEIRGH---- 395 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG--RKF---VRISLGGVRDEAEIRGH---- 395 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC--CCE---EEEecCccccHHHhccc----
Confidence 4688899999999875 23457999999999999999999999875 334 34555555555543210
Q ss_pred hCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCcc-c-----hhhccCCCCC-------------CCCCcEEE-EEe
Q 000518 215 LGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL-D-----LERTGIPFGD-------------VHRGCKIL-VTS 274 (1448)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-~-----~~~l~~~l~~-------------~~~gs~il-vTT 274 (1448)
.......-....++.+. .. +.++-+++||.++... + -.++..-+.+ .-.=|+|+ |||
T Consensus 396 -RRTYIGamPGrIiQ~mk-ka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaT 472 (782)
T COG0466 396 -RRTYIGAMPGKIIQGMK-KA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIAT 472 (782)
T ss_pred -cccccccCChHHHHHHH-Hh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEee
Confidence 00011111111222221 11 2478899999987541 0 0111111111 11124444 344
Q ss_pred ccc-h-hhhhcCcccceEEeecCChHHHHHHHHHHh
Q 000518 275 RRR-D-VLVSEMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1448)
Q Consensus 275 R~~-~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1448)
-|. + +....++...+|++.+.+++|-.+.-+++.
T Consensus 473 ANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 473 ANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred cCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 433 2 222246677899999999999998888876
No 174
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0044 Score=72.95 Aligned_cols=152 Identities=17% Similarity=0.213 Sum_probs=89.6
Q ss_pred CccccccHHHHHHHHHHHHc---C---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCH
Q 000518 137 GHEFIESRESILNDILDALR---G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDL 204 (1448)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~ 204 (1448)
.+..+.|.++.+.++.+++. . ...+=|.+||++|+|||.||+++++...+- ++.++..
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp--- 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP--- 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch---
Confidence 35667788888887777654 1 234678999999999999999999988642 3333332
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCcc---ch----------hhccCCC---C-CCCCC
Q 000518 205 KRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL---DL----------ERTGIPF---G-DVHRG 267 (1448)
Q Consensus 205 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~----------~~l~~~l---~-~~~~g 267 (1448)
+|...+.+ .....++++.+...+.-.+++++|+++-.. +| ..+...+ . ....|
T Consensus 258 -----eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 258 -----EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred -----hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 22222222 134556777777777899999999986441 11 1111111 1 11223
Q ss_pred cEEEE---Eeccchhhhh---cCcccceEEeecCChHHHHHHHHHHh
Q 000518 268 CKILV---TSRRRDVLVS---EMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1448)
Q Consensus 268 s~ilv---TTR~~~v~~~---~~~~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1448)
-.||| |+|...+-.. +-...+.|.+..-+++.-.++++..+
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~ 374 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIIC 374 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHH
Confidence 33333 4454333221 11224567777777776667776666
No 175
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.21 E-value=7.1e-05 Score=93.73 Aligned_cols=41 Identities=20% Similarity=0.147 Sum_probs=23.4
Q ss_pred ccccccccccccceecCCcccccCCCcceEEeccCCccccc
Q 000518 1262 LKWLSLENLESLTSFYSGNYTFKFPCLEDLFVIECPNMKIF 1302 (1448)
Q Consensus 1262 L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I~~Cp~l~~l 1302 (1448)
++.|.+..|...+.-........+..++.+.+.+|+.+..-
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 66777777665544333211111566777777777777543
No 176
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.21 E-value=0.0032 Score=77.97 Aligned_cols=174 Identities=18% Similarity=0.225 Sum_probs=95.1
Q ss_pred CCccccccHHHHHHHHHHH---HcC---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcC
Q 000518 136 EGHEFIESRESILNDILDA---LRG---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~---L~~---------~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 203 (1448)
.....+.|-+..++++.++ +.. ...+-+.++|++|+|||++|+.+++.... . ++.++.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~--~-----~~~i~~--- 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--P-----FFSISG--- 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC--C-----eeeccH---
Confidence 3455667766665555443 321 12345889999999999999999987642 1 233321
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCcc------------ch----hhccCCCC--CCC
Q 000518 204 LKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL------------DL----ERTGIPFG--DVH 265 (1448)
Q Consensus 204 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~~----~~l~~~l~--~~~ 265 (1448)
.++.... .+ . ....+..+.+......+.+|++||++... .+ ..+...+. ...
T Consensus 122 -~~~~~~~---~g-----~-~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 122 -SDFVEMF---VG-----V-GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred -HHHHHHH---hc-----c-cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 1111111 00 0 12233444444444577899999985531 01 11111111 122
Q ss_pred CCcEEEEEeccchhhhhcC----cccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCC
Q 000518 266 RGCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGL 331 (1448)
Q Consensus 266 ~gs~ilvTTR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 331 (1448)
.+..||.||......+.++ .....+.++..+.++-.++|+.++.......+ .....+++.+.|.
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~ 259 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGF 259 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCC
Confidence 3455666676543322211 23457888888999999999888754322221 1244778888774
No 177
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0048 Score=76.35 Aligned_cols=170 Identities=18% Similarity=0.193 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHcCC---------CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000518 144 RESILNDILDALRGP---------YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1448)
Q Consensus 144 R~~~~~~l~~~L~~~---------~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 214 (1448)
-..+++++++.|+++ -.+=+.++|++|+|||-||++++....+- |++++... ..+.
T Consensus 319 AK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGSE--------FvE~ 383 (774)
T KOG0731|consen 319 AKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGSE--------FVEM 383 (774)
T ss_pred HHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechHH--------HHHH
Confidence 445667777777742 23568899999999999999999987643 45555431 1111
Q ss_pred hCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCcc-----------------chhhccCCCCCCC--CCcEEEEEec
Q 000518 215 LGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL-----------------DLERTGIPFGDVH--RGCKILVTSR 275 (1448)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-----------------~~~~l~~~l~~~~--~gs~ilvTTR 275 (1448)
+... -...++.+....+.+.+..|.+|+++... .++.+..-..... .|--++-+|.
T Consensus 384 ~~g~-----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tn 458 (774)
T KOG0731|consen 384 FVGV-----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATN 458 (774)
T ss_pred hccc-----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccC
Confidence 1111 13556667777777788999999875431 1122222222122 2233444666
Q ss_pred cchhhhhc---Cc-ccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHH
Q 000518 276 RRDVLVSE---MH-CQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1448)
Q Consensus 276 ~~~v~~~~---~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 334 (1448)
..++.+.+ .+ -++.+.++.-+...-.++|+.++.......+..++++ |+....|.+=|
T Consensus 459 r~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 459 RPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHH
Confidence 66665541 12 2457788888888999999999975544445456666 88888887743
No 178
>PRK10536 hypothetical protein; Provisional
Probab=97.13 E-value=0.0035 Score=67.99 Aligned_cols=56 Identities=25% Similarity=0.215 Sum_probs=42.2
Q ss_pred CccccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEE
Q 000518 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVV 194 (1448)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~ 194 (1448)
+...+.+|......++.++.+. .+|.+.|++|+|||+||.+++.+.-..+.|+.++
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 3455677888888888888654 4999999999999999999998643234455444
No 179
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.011 Score=65.66 Aligned_cols=186 Identities=18% Similarity=0.200 Sum_probs=110.0
Q ss_pred cCCCccccccHHHHHHHHHHHHc----C---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC
Q 000518 134 YNEGHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ 200 (1448)
Q Consensus 134 ~~~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~ 200 (1448)
|......+.|-++.+++|.+... + +..+=|.++|++|+|||-||++|+++.. ..| +-|..
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~--AtF-----Irvvg 218 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD--ATF-----IRVVG 218 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC--ceE-----EEecc
Confidence 34446677888998888888764 1 2456789999999999999999999875 224 33322
Q ss_pred CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc-------------cchh---hccCCCCC-
Q 000518 201 TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS-------------LDLE---RTGIPFGD- 263 (1448)
Q Consensus 201 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~-------------~~~~---~l~~~l~~- 263 (1448)
. ++.+..+ | .-...++++.+-.+......|.+|.++.. +... .+...+..
T Consensus 219 S----ElVqKYi---G------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF 285 (406)
T COG1222 219 S----ELVQKYI---G------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF 285 (406)
T ss_pred H----HHHHHHh---c------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence 1 2222221 1 11234555555555678899999998543 0001 11111211
Q ss_pred -CCCCcEEEEEeccchhhhhc----CcccceEEeecCChHHHHHHHHHHhCC--CCCCccHHHHHHHHHHHhCCCh----
Q 000518 264 -VHRGCKILVTSRRRDVLVSE----MHCQNNYCVSVLNKEEAWSLFSKVVGN--CVEDPDLQTVAIQVANECGGLP---- 332 (1448)
Q Consensus 264 -~~~gs~ilvTTR~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~~~~~~~~i~~~~~glP---- 332 (1448)
.....|||..|-..++.+.+ -.-++.++++.=+.+--.++|+-++.. ..+.-+++ .+++.+.|.-
T Consensus 286 D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdl 361 (406)
T COG1222 286 DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADL 361 (406)
T ss_pred CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHH
Confidence 23456899988766665541 123457888755666666778777752 22333433 4556665553
Q ss_pred HHHHHHHHHhc
Q 000518 333 IAILTVARTLR 343 (1448)
Q Consensus 333 lai~~~~~~l~ 343 (1448)
-||.+=|++++
T Consensus 362 kaictEAGm~A 372 (406)
T COG1222 362 KAICTEAGMFA 372 (406)
T ss_pred HHHHHHHhHHH
Confidence 45555566653
No 180
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.12 E-value=0.013 Score=67.83 Aligned_cols=194 Identities=16% Similarity=0.169 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHH-HHHHHHHhccCCcceEEEEEecCC---cCHHHHHHHHHHHhC---
Q 000518 144 RESILNDILDALRGPYVYMIGVYGMAGIGKTTLV-KEVARLAKEGRIFDEVVFAEVSQT---PDLKRIRREIADQLG--- 216 (1448)
Q Consensus 144 R~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa-~~~~~~~~~~~~f~~~~wv~v~~~---~~~~~~~~~i~~~l~--- 216 (1448)
|.+.+++|-.||.+..-.+|.|.||-|+||+.|+ .++..+.+ .+..+++.+- .+-..+++.++.++|
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5678899999999888889999999999999999 66665532 2666666432 233444445544442
Q ss_pred --------------------CCCCC--CChHHHHHHHHHH----HH-------------------------ccCcEEEEE
Q 000518 217 --------------------LNFCE--ESDSERIMMLCNR----LK-------------------------REKKILVIL 245 (1448)
Q Consensus 217 --------------------~~~~~--~~~~~~~~~l~~~----l~-------------------------~~k~~LlVl 245 (1448)
+.... ++.+..+..+... |+ -.++-+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 11111 2222222222111 10 023779999
Q ss_pred cCCCCc-----------cchhhccCCCCCCCCCcEEEEEeccchhhhh---cC--cccceEEeecCChHHHHHHHHHHhC
Q 000518 246 DDIWTS-----------LDLERTGIPFGDVHRGCKILVTSRRRDVLVS---EM--HCQNNYCVSVLNKEEAWSLFSKVVG 309 (1448)
Q Consensus 246 Ddv~~~-----------~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~---~~--~~~~~~~l~~L~~~e~~~Lf~~~~~ 309 (1448)
|+.... .+|..... ..+-..||++|-+...... ++ ...+.+.+...+.+.|.++...+..
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 997543 24543211 2345579998887655543 23 3456789999999999999999885
Q ss_pred CCCCC-------------------ccHHHHHHHHHHHhCCChHHHHHHHHHhcCCCh
Q 000518 310 NCVED-------------------PDLQTVAIQVANECGGLPIAILTVARTLRNKPL 347 (1448)
Q Consensus 310 ~~~~~-------------------~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~ 347 (1448)
..... .....-....++.+||--.-+..+++.++....
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~ 287 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGES 287 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCC
Confidence 32110 112334567888999999999999999987643
No 181
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.11 E-value=0.006 Score=64.21 Aligned_cols=170 Identities=19% Similarity=0.268 Sum_probs=104.4
Q ss_pred ccccccHHHHHHH---HHHHHcCC------CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHH
Q 000518 138 HEFIESRESILND---ILDALRGP------YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIR 208 (1448)
Q Consensus 138 ~~~~~gR~~~~~~---l~~~L~~~------~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 208 (1448)
...++|.++...+ |++.|.+. ..+-|..+|++|+|||-+|+++++...+- | +.|.. .+
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vka----t~-- 186 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVKA----TE-- 186 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEech----HH--
Confidence 4567787765443 45666642 35789999999999999999999987632 2 22211 11
Q ss_pred HHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc--------------cchhhccCCCC--CCCCCcEEEE
Q 000518 209 REIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--------------LDLERTGIPFG--DVHRGCKILV 272 (1448)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--------------~~~~~l~~~l~--~~~~gs~ilv 272 (1448)
-|.+..| +-...+++++++..+.-.+.+.+|.++-. +..+++..-+. ..+.|...|-
T Consensus 187 -liGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 187 -LIGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred -HHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 1222222 12345677888887789999999997543 11222222222 2456777777
Q ss_pred EeccchhhhhcCc--ccceEEeecCChHHHHHHHHHHhCCCC--CCccHHHHHHHHHHHhCCC
Q 000518 273 TSRRRDVLVSEMH--CQNNYCVSVLNKEEAWSLFSKVVGNCV--EDPDLQTVAIQVANECGGL 331 (1448)
Q Consensus 273 TTR~~~v~~~~~~--~~~~~~l~~L~~~e~~~Lf~~~~~~~~--~~~~~~~~~~~i~~~~~gl 331 (1448)
.|-+.+..+.+.. ....|+..--+++|-.+++..++.... .... .+.++++.+|+
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 7877776664222 234567777788999999998884322 1222 34566666654
No 182
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.02 Score=68.93 Aligned_cols=155 Identities=17% Similarity=0.162 Sum_probs=92.5
Q ss_pred ccccHHHHHHHHHHHHc------CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000518 140 FIESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1448)
Q Consensus 140 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 213 (1448)
+-+|.++.+++|++++. ..+-++++++||+|+|||.+|+.++...- +.| +-++|..-.|+.+|-.-=
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkF---fRfSvGG~tDvAeIkGHR-- 484 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKF---FRFSVGGMTDVAEIKGHR-- 484 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--Cce---EEEeccccccHHhhcccc--
Confidence 45688999999999875 34568999999999999999999998875 223 345677777766542100
Q ss_pred HhCCCCCCCChHHHHHHHHHHHHc--cCcEEEEEcCCCCcc---------ch---------hhccCCCCC-CCCCcEEEE
Q 000518 214 QLGLNFCEESDSERIMMLCNRLKR--EKKILVILDDIWTSL---------DL---------ERTGIPFGD-VHRGCKILV 272 (1448)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~---------~~---------~~l~~~l~~-~~~gs~ilv 272 (1448)
...... ... ++.+.|++ ..+-|+.+|+|+..- .+ ..|...+.+ .-.=|||++
T Consensus 485 ---RTYVGA-MPG---kiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLF 557 (906)
T KOG2004|consen 485 ---RTYVGA-MPG---KIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLF 557 (906)
T ss_pred ---eeeecc-CCh---HHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEE
Confidence 001111 111 22333332 467789999987541 11 111111111 112366665
Q ss_pred E-eccc--hhhhhcCcccceEEeecCChHHHHHHHHHHh
Q 000518 273 T-SRRR--DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1448)
Q Consensus 273 T-TR~~--~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1448)
. |-|. .+.....+....|++.+...+|-..+-.++.
T Consensus 558 icTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 558 ICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 3 3222 1111134556789999999998887776665
No 183
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.09 E-value=0.0037 Score=64.50 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=77.9
Q ss_pred cHHHHHHHHHHHHcCCCeE-EEEEEcCCCchHHHHHHHHHHHHhccCC------------------cceEEEEEecCC--
Q 000518 143 SRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRI------------------FDEVVFAEVSQT-- 201 (1448)
Q Consensus 143 gR~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~~~~~~~~~~~------------------f~~~~wv~v~~~-- 201 (1448)
|.++.++.|...+..++++ .+.++|+.|+||+++|..+++..--... ..-+.|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 4567778888888766665 6899999999999999999987532111 122333332221
Q ss_pred -cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEeccch
Q 000518 202 -PDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRRD 278 (1448)
Q Consensus 202 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~~~ 278 (1448)
..++++. ++...+..... .+++-++|+||++.. +.+..+...+-....++++|++|++..
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred hhhHHHHH-HHHHHHHHHHh----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 2333332 34333322211 246788999999875 456666665555557888888888665
Q ss_pred h-hhhcCcccceEEeecCC
Q 000518 279 V-LVSEMHCQNNYCVSVLN 296 (1448)
Q Consensus 279 v-~~~~~~~~~~~~l~~L~ 296 (1448)
- ..........+.+.+++
T Consensus 144 ~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GS-HHHHTTSEEEEE----
T ss_pred HChHHHHhhceEEecCCCC
Confidence 3 22122334466666653
No 184
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.09 E-value=0.012 Score=67.13 Aligned_cols=172 Identities=14% Similarity=0.102 Sum_probs=98.5
Q ss_pred HHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccC-----------------CcceEEEEEecCCcCHHHH
Q 000518 146 SILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGR-----------------IFDEVVFAEVSQTPDLKRI 207 (1448)
Q Consensus 146 ~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~-----------------~f~~~~wv~v~~~~~~~~~ 207 (1448)
...+++.+.+..+++ ..+.++|+.|+||+++|..+++..--.. |-| +.|+.......
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~---- 85 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRT---- 85 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcc----
Confidence 456667777765555 4699999999999999999987653211 111 11221000000
Q ss_pred HHHHHHHhCCCCCCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEecc-chhh
Q 000518 208 RREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRR-RDVL 280 (1448)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~-~~v~ 280 (1448)
+......-..+.++.+.+.+. .+++-++|+|+++.. ..-+.+...+-....++.+|++|.+ ..+.
T Consensus 86 --------~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lL 157 (319)
T PRK08769 86 --------GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLP 157 (319)
T ss_pred --------cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCc
Confidence 000000011333444444333 257789999999875 2334444444333456666666654 4443
Q ss_pred hhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000518 281 VSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1448)
Q Consensus 281 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 337 (1448)
.........+.+.+++.+++.+.+... | .+ ...+..++..++|.|+....
T Consensus 158 pTIrSRCq~i~~~~~~~~~~~~~L~~~-~--~~----~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 158 ATIRSRCQRLEFKLPPAHEALAWLLAQ-G--VS----ERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred hHHHhhheEeeCCCcCHHHHHHHHHHc-C--CC----hHHHHHHHHHcCCCHHHHHH
Confidence 322333557889999999998888653 2 11 22366789999999986543
No 185
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.06 E-value=0.009 Score=69.53 Aligned_cols=159 Identities=9% Similarity=0.011 Sum_probs=88.7
Q ss_pred ccc-HHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000518 141 IES-RESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1448)
Q Consensus 141 ~~g-R~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 218 (1448)
++| .+..++.+...+...++ ....++|+.|+||||+|+.+++..--....... .+..-...+.+...-..+
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~~~hpD 79 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDSGNHPD 79 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhcCCCCC
Confidence 455 66677788887775554 467999999999999999998875321101000 000000111110000000
Q ss_pred C------CCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEeccch-hhhhcCc
Q 000518 219 F------CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRRD-VLVSEMH 285 (1448)
Q Consensus 219 ~------~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~~~-v~~~~~~ 285 (1448)
. ......+.+..+.+.+. .+++-++|+|+++.. ...+.+...+.....++.+|++|.+.. +......
T Consensus 80 ~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrS 159 (329)
T PRK08058 80 VHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILS 159 (329)
T ss_pred EEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHh
Confidence 0 00011233333333332 256678999998765 345555555554456777777766543 3221233
Q ss_pred ccceEEeecCChHHHHHHHHH
Q 000518 286 CQNNYCVSVLNKEEAWSLFSK 306 (1448)
Q Consensus 286 ~~~~~~l~~L~~~e~~~Lf~~ 306 (1448)
....+++.++++++..+.+.+
T Consensus 160 Rc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 160 RCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred hceeeeCCCCCHHHHHHHHHH
Confidence 456789999999999888865
No 186
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.04 E-value=0.00087 Score=68.09 Aligned_cols=82 Identities=20% Similarity=0.402 Sum_probs=46.6
Q ss_pred CCccEEEcCCCCCCCCCCchhhcCCCCceEEEecCCcCcccCccCCC-CCCCCEEeccCCCCCCC---cccCCCCCCCEE
Q 000518 510 PHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCH-LPNLESLCLDQCILGDI---AIIGNLKNLEIL 585 (1448)
Q Consensus 510 ~~L~~L~l~~n~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~-L~~Lr~L~L~~~~i~~l---~~i~~L~~L~~L 585 (1448)
.+...++|..|++ ..++. |..++.|..|.|++|.|..+-+.+.. +++|..|.|.+|.|..+ ..+..++.|++|
T Consensus 42 d~~d~iDLtdNdl-~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDL-RKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccch-hhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 3445566666654 23332 56666677777777777666444433 34566666666655433 445555666666
Q ss_pred EcccCCCcc
Q 000518 586 SLCCSDIEQ 594 (1448)
Q Consensus 586 ~Ls~~~l~~ 594 (1448)
.+-+|.++.
T Consensus 119 tll~Npv~~ 127 (233)
T KOG1644|consen 119 TLLGNPVEH 127 (233)
T ss_pred eecCCchhc
Confidence 666655543
No 187
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.03 E-value=0.0061 Score=73.46 Aligned_cols=152 Identities=13% Similarity=0.093 Sum_probs=87.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCc
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1448)
.-+.|+|+.|+|||+||+++++..... --.+++++ ..++...+...+... ........+ ...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~--------~~~~f~~~~--~~~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG--------EMQRFRQFY--RNV 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc--------hHHHHHHHc--ccC
Confidence 568899999999999999999988632 23345554 234444554444321 112222222 244
Q ss_pred EEEEEcCCCCccc--h--hhccCCCCC-CCCCcEEEEEeccc-h----hhhh---cCcccceEEeecCChHHHHHHHHHH
Q 000518 241 ILVILDDIWTSLD--L--ERTGIPFGD-VHRGCKILVTSRRR-D----VLVS---EMHCQNNYCVSVLNKEEAWSLFSKV 307 (1448)
Q Consensus 241 ~LlVlDdv~~~~~--~--~~l~~~l~~-~~~gs~ilvTTR~~-~----v~~~---~~~~~~~~~l~~L~~~e~~~Lf~~~ 307 (1448)
-+||+||+..... + +.+...+.. ...|..||+||... . +... .+.....+.+.+++.++-..+++++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 5888999865421 1 122222211 11355788887542 1 1111 2333467889999999999999988
Q ss_pred hCCCCCCccHHHHHHHHHHHhCCC
Q 000518 308 VGNCVEDPDLQTVAIQVANECGGL 331 (1448)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~~~gl 331 (1448)
+.... -.-.+++..-|++.+.|.
T Consensus 284 ~~~~~-~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 284 AEALS-IRIEETALDFLIEALSSN 306 (445)
T ss_pred HHHcC-CCCCHHHHHHHHHhcCCC
Confidence 74321 111245566677666644
No 188
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.01 E-value=0.0003 Score=77.26 Aligned_cols=161 Identities=20% Similarity=0.191 Sum_probs=107.0
Q ss_pred CCCCccEEEcCCCCCCCCCCc---hhhcCCCCceEEEecCCcCccc--------------CccCCCCCCCCEEeccCCCC
Q 000518 508 EYPHLTSLCMNPKDPFLHIPD---NFFAGMPKLRVLVLTRMKLLTL--------------PSSFCHLPNLESLCLDQCIL 570 (1448)
Q Consensus 508 ~~~~L~~L~l~~n~~~~~~~~---~~f~~l~~Lr~L~L~~~~i~~l--------------p~~i~~L~~Lr~L~L~~~~i 570 (1448)
.+++|++|+|+.|.+...-+. .++.++..|+.|.|.+|++... ...+..-..||++...+|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 677899999998877544332 3457788888899988887622 12245567888888888877
Q ss_pred CCC------cccCCCCCCCEEEcccCCCc-----ccchhhhccCccCEEeccCCCCCCc----cCccccCCCCCCCEEEe
Q 000518 571 GDI------AIIGNLKNLEILSLCCSDIE-----QLPREIGELTQLKLLDLSNCSKLKV----IPPNVISSLSQLEELYL 635 (1448)
Q Consensus 571 ~~l------~~i~~L~~L~~L~Ls~~~l~-----~LP~~i~~L~~L~~L~Ls~~~~l~~----lp~~~l~~L~~L~~L~l 635 (1448)
..- ..+...+.|+.+.++.|.|. -+-..+..+++|+.||+..|..-.. +... +..+++|++|++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka-L~s~~~L~El~l 248 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA-LSSWPHLRELNL 248 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH-hcccchheeecc
Confidence 542 34666678888888888765 1234567788899999888763221 2222 566778888988
Q ss_pred eCCCccccccccccccCCcChhhcC-CCCCCCEEEeecCCCc
Q 000518 636 GNTSVEWEFEGLNLERNNASLQELS-ILSHLTTLEIHIRDAV 676 (1448)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~~L~l~~~~~~ 676 (1448)
++|.+... ........+. ..++|+.|.+.+|.++
T Consensus 249 ~dcll~~~-------Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 249 GDCLLENE-------GAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred cccccccc-------cHHHHHHHHhccCCCCceeccCcchhH
Confidence 88876511 1111222332 2578888888887765
No 189
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.01 E-value=0.033 Score=63.70 Aligned_cols=176 Identities=11% Similarity=0.064 Sum_probs=99.2
Q ss_pred HHHHHHHHHHcCCC-eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCC-----
Q 000518 146 SILNDILDALRGPY-VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNF----- 219 (1448)
Q Consensus 146 ~~~~~l~~~L~~~~-~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~----- 219 (1448)
...+++...+..++ ...+.++|+.|+||+++|..++...-=.+.-+ ..+..-...+.+...-..+.
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--------~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS--------EACGFCHSCELMQSGNHPDLHVIKP 81 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC--------CCCCCCHHHHHHHcCCCCCEEEEec
Confidence 34566666665554 45899999999999999999987653111000 00000011111111100000
Q ss_pred ---CCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEecc-chhhhhcCcccce
Q 000518 220 ---CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRR-RDVLVSEMHCQNN 289 (1448)
Q Consensus 220 ---~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~-~~v~~~~~~~~~~ 289 (1448)
...-..+.++.+.+.+. .+++-++|+|+++.. ...+.+...+-....++.+|++|.+ ..+..........
T Consensus 82 ~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~ 161 (319)
T PRK06090 82 EKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQ 161 (319)
T ss_pred CcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccee
Confidence 00012233333333332 256678999999765 3556565555444456666665554 4444432334568
Q ss_pred EEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000518 290 YCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1448)
Q Consensus 290 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 338 (1448)
+.+.+++++++.+.+... |. + .+..+++.++|.|+....+
T Consensus 162 ~~~~~~~~~~~~~~L~~~-~~--~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKGQ-GI--T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred EeCCCCCHHHHHHHHHHc-CC--c------hHHHHHHHcCCCHHHHHHH
Confidence 899999999999988653 21 1 1356789999999865443
No 190
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.01 E-value=0.0065 Score=73.67 Aligned_cols=176 Identities=12% Similarity=0.095 Sum_probs=93.9
Q ss_pred CccccccHHHHHHHHHHHHc-------C---CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHH
Q 000518 137 GHEFIESRESILNDILDALR-------G---PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKR 206 (1448)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~-------~---~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~ 206 (1448)
....+.|.+..++.+.+... . ...+-|.++|++|+|||.+|+.+++.... .| +-++.+ +
T Consensus 226 ~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~--~~---~~l~~~------~ 294 (489)
T CHL00195 226 KISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL--PL---LRLDVG------K 294 (489)
T ss_pred CHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--CE---EEEEhH------H
Confidence 34566777766666554211 1 23456899999999999999999998752 12 112211 1
Q ss_pred HHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCccc--------------hhhccCCCCCCCCCcEEEE
Q 000518 207 IRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD--------------LERTGIPFGDVHRGCKILV 272 (1448)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--------------~~~l~~~l~~~~~gs~ilv 272 (1448)
+. .....+ ....+..+.+......+++|++|+++.... ...+...+.....+.-||.
T Consensus 295 ----l~----~~~vGe-se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 295 ----LF----GGIVGE-SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred ----hc----ccccCh-HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 11 111111 122344444444456889999999864310 0111111112223344556
Q ss_pred EeccchhhhhcC----cccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCCh
Q 000518 273 TSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP 332 (1448)
Q Consensus 273 TTR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 332 (1448)
||.+..-.+.++ ..+..+.++.-+.++-.++|+.+............-...+++.+.|.-
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 776554322211 234578888888999999999887432111000111345666666553
No 191
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.99 E-value=0.02 Score=74.79 Aligned_cols=46 Identities=24% Similarity=0.250 Sum_probs=37.4
Q ss_pred ccccHHHHHHHHHHHHc------CCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 140 FIESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 140 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
.++|.++.+++|.+++. ..+.+++.++|++|+|||++|+.+++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 46788888888888654 22345899999999999999999999875
No 192
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.96 E-value=0.029 Score=59.94 Aligned_cols=180 Identities=17% Similarity=0.159 Sum_probs=103.8
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEec-CCcCHHHHHHHHHHHhCCCCCC--CC-hHHHHHHHH
Q 000518 157 GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS-QTPDLKRIRREIADQLGLNFCE--ES-DSERIMMLC 232 (1448)
Q Consensus 157 ~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~l~~~~~~--~~-~~~~~~~l~ 232 (1448)
.++-+++.++|.-|+|||.+++++...... |.++-|.++ ...+...+...|...+..+... .. .....+.+.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNE----DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCC----CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 455579999999999999999955544321 222224443 4457788888888888763211 11 122233445
Q ss_pred HHHHccCc-EEEEEcCCCCc--cchhhccCCCCCCCCCc---EEEEEeccch-------hhhh-cCcccceEEeecCChH
Q 000518 233 NRLKREKK-ILVILDDIWTS--LDLERTGIPFGDVHRGC---KILVTSRRRD-------VLVS-EMHCQNNYCVSVLNKE 298 (1448)
Q Consensus 233 ~~l~~~k~-~LlVlDdv~~~--~~~~~l~~~l~~~~~gs---~ilvTTR~~~-------v~~~-~~~~~~~~~l~~L~~~ 298 (1448)
.-.++++| ..+++||..+. ...+.+.........++ +|+..-..+- +... .......|++.|++++
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 55556788 99999998654 22232222111111111 2333221110 0010 1112223899999999
Q ss_pred HHHHHHHHHhCCCC-CCc-cHHHHHHHHHHHhCCChHHHHHHHH
Q 000518 299 EAWSLFSKVVGNCV-EDP-DLQTVAIQVANECGGLPIAILTVAR 340 (1448)
Q Consensus 299 e~~~Lf~~~~~~~~-~~~-~~~~~~~~i~~~~~glPlai~~~~~ 340 (1448)
+...+++.+.+... +.+ -..+....|.....|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999988884222 111 1245677889999999999987764
No 193
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.93 E-value=0.021 Score=65.40 Aligned_cols=176 Identities=8% Similarity=0.037 Sum_probs=101.1
Q ss_pred HHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCC------
Q 000518 147 ILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNF------ 219 (1448)
Q Consensus 147 ~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~------ 219 (1448)
..+.+...+..+++ ....++|+.|+||+++|+.++...-=..... ...+..-...+.+...-..+.
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDFHILEPI 82 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEccc
Confidence 45566666665544 5788999999999999999998763111110 001111111111111111100
Q ss_pred -CCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEeccc-hhhhhcCcccceEE
Q 000518 220 -CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMHCQNNYC 291 (1448)
Q Consensus 220 -~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~~~~~~~~~~ 291 (1448)
...-..+.++++.+.+. .+++-++|+|+++.. ...+.+...+-....++.+|++|.+. .+..........+.
T Consensus 83 ~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~ 162 (325)
T PRK06871 83 DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWL 162 (325)
T ss_pred cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEe
Confidence 00112344444444443 257778999999876 34555555555445566666666654 44332233356889
Q ss_pred eecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHH
Q 000518 292 VSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1448)
Q Consensus 292 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 335 (1448)
+.++++++..+.+....+.. ...+...++.++|.|..+
T Consensus 163 ~~~~~~~~~~~~L~~~~~~~------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 163 IHPPEEQQALDWLQAQSSAE------ISEILTALRINYGRPLLA 200 (325)
T ss_pred CCCCCHHHHHHHHHHHhccC------hHHHHHHHHHcCCCHHHH
Confidence 99999999999888764321 112556788899999633
No 194
>PRK08118 topology modulation protein; Reviewed
Probab=96.91 E-value=0.00049 Score=71.38 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=29.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc-CCcceEEE
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEG-RIFDEVVF 195 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~-~~f~~~~w 195 (1448)
+.|.|+|++|+||||+|+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987643 45777776
No 195
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.012 Score=68.02 Aligned_cols=146 Identities=23% Similarity=0.293 Sum_probs=87.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH-
Q 000518 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK- 236 (1448)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~- 236 (1448)
.....+.+.|++|+|||+||..++.... |..+--++-.... .-++......+.+.+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiSpe~mi------------------G~sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIISPEDMI------------------GLSESAKCAHIKKIFED 593 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeChHHcc------------------CccHHHHHHHHHHHHHH
Confidence 3456788999999999999999997654 5544333211111 1112222222222222
Q ss_pred --ccCcEEEEEcCCCCccchhhccCCCCC-------------CCCCcEEE--EEeccchhhhhcCcc----cceEEeecC
Q 000518 237 --REKKILVILDDIWTSLDLERTGIPFGD-------------VHRGCKIL--VTSRRRDVLVSEMHC----QNNYCVSVL 295 (1448)
Q Consensus 237 --~~k~~LlVlDdv~~~~~~~~l~~~l~~-------------~~~gs~il--vTTR~~~v~~~~~~~----~~~~~l~~L 295 (1448)
+..--.||+||+....+|-.++..|.+ ..+|-|.+ -||..+.+... |+- ...|+++.+
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~-m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQE-MGILDCFSSTIHVPNL 672 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHH-cCHHHhhhheeecCcc
Confidence 345678999999998888887766532 23455544 47777777774 543 347889888
Q ss_pred Ch-HHHHHHHHHHhCCCCCCccHHHHHHHHHHHh
Q 000518 296 NK-EEAWSLFSKVVGNCVEDPDLQTVAIQVANEC 328 (1448)
Q Consensus 296 ~~-~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~ 328 (1448)
+. ++..+.++..- ...+.+.+.++.+.+.+|
T Consensus 673 ~~~~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 673 TTGEQLLEVLEELN--IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred CchHHHHHHHHHcc--CCCcchhHHHHHHHhccc
Confidence 76 77777776532 122333444555555555
No 196
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.88 E-value=0.0058 Score=70.10 Aligned_cols=103 Identities=14% Similarity=0.190 Sum_probs=67.6
Q ss_pred HHHHHHHHcC-CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcce-EEEEEecCC-cCHHHHHHHHHHHhCCCCCCCCh
Q 000518 148 LNDILDALRG-PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDE-VVFAEVSQT-PDLKRIRREIADQLGLNFCEESD 224 (1448)
Q Consensus 148 ~~~l~~~L~~-~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~-~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~ 224 (1448)
..++++.+.- .+-.-+.|+|..|+|||||++.+++..... +-+. ++|+.+.+. .++.++.+.+...+.....++..
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 4457776651 223457999999999999999999887532 3344 467777655 46888888888877654333322
Q ss_pred HH------HHHHHHHHHH-ccCcEEEEEcCCCCc
Q 000518 225 SE------RIMMLCNRLK-REKKILVILDDIWTS 251 (1448)
Q Consensus 225 ~~------~~~~l~~~l~-~~k~~LlVlDdv~~~ 251 (1448)
.. .+....+++. ++++++||+|++...
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 21 1122233333 489999999998654
No 197
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.15 Score=59.13 Aligned_cols=86 Identities=14% Similarity=0.084 Sum_probs=48.4
Q ss_pred EEEE-Eeccchhhhhc---Ccc-cceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH-HHHHh
Q 000518 269 KILV-TSRRRDVLVSE---MHC-QNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT-VARTL 342 (1448)
Q Consensus 269 ~ilv-TTR~~~v~~~~---~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~-~~~~l 342 (1448)
|||| ||-..+-.+.+ .|. +..+.|.-=+.+....||..+.|...++. +..+|.+...|.-+.=.. .+.+|
T Consensus 339 RIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~----L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 339 RIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHR----LFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred eEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcc----hhHHHHHHhhcCccCHHHHHHHHh
Confidence 5555 77766555441 122 33577777889999999999997544333 344555555554333334 44455
Q ss_pred cCCChHH--HHHHHHHHh
Q 000518 343 RNKPLFV--WKKALQELR 358 (1448)
Q Consensus 343 ~~~~~~~--w~~~l~~l~ 358 (1448)
+++.+.+ -+.+.+.+.
T Consensus 415 ~~~~dad~~lk~Lv~~l~ 432 (457)
T KOG0743|consen 415 KNKNDADVALKGLVEALE 432 (457)
T ss_pred hccccHHHHHHHHHHHHH
Confidence 5553222 454444444
No 198
>PRK08116 hypothetical protein; Validated
Probab=96.82 E-value=0.0025 Score=71.55 Aligned_cols=101 Identities=22% Similarity=0.202 Sum_probs=58.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCc
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1448)
..+.++|..|+|||.||.++++....+ -..+++++ ..+++..+......... .....+.+.+. +-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~~-----~~~~~~~~~l~-~~- 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSGK-----EDENEIIRSLV-NA- 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhcccc-----ccHHHHHHHhc-CC-
Confidence 458999999999999999999998643 33456664 44455555544432111 11223344443 22
Q ss_pred EEEEEcCCCC--ccchhh--ccCCCCC-CCCCcEEEEEecc
Q 000518 241 ILVILDDIWT--SLDLER--TGIPFGD-VHRGCKILVTSRR 276 (1448)
Q Consensus 241 ~LlVlDdv~~--~~~~~~--l~~~l~~-~~~gs~ilvTTR~ 276 (1448)
=||||||+.. ..+|.. +...+.. ...|..+||||..
T Consensus 180 dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 180 DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3899999943 334432 2211111 1245568888863
No 199
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.78 E-value=0.053 Score=71.27 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=35.9
Q ss_pred ccccHHHHHHHHHHHHcC---------CCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 140 FIESRESILNDILDALRG---------PYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 140 ~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
.++|.+..++.+...+.. ....++.++|+.|+|||++|+.+++...
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 467888888887777651 1235789999999999999999997653
No 200
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.77 E-value=0.0074 Score=72.45 Aligned_cols=190 Identities=12% Similarity=0.135 Sum_probs=118.3
Q ss_pred CCccccccHHHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000518 136 EGHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 214 (1448)
..+..++|.+.....|...+...++ .--...|+-|+||||+|+-++...-=.. | .....+..-...++|...
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~g 85 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINEG 85 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhcC
Confidence 3466779999988888888875443 4667899999999999999998763111 1 112223333333444433
Q ss_pred hCCCCCC-----CChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEE-Eeccchhhhh
Q 000518 215 LGLNFCE-----ESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-TSRRRDVLVS 282 (1448)
Q Consensus 215 l~~~~~~-----~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilv-TTR~~~v~~~ 282 (1448)
-..+..+ ....+.++.+.+... +++--+.|+|+|.-. ..|+.+..-+-......+.|. ||-...+...
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 1111111 123345555555554 246668899999654 567777666654444555555 5554454443
Q ss_pred cCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChH
Q 000518 283 EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI 333 (1448)
Q Consensus 283 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 333 (1448)
.......+.++.++.++-...+...+..+....+ ++...-|++...|...
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e-~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE-EDALSLIARAAEGSLR 215 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCccC-HHHHHHHHHHcCCChh
Confidence 3445668999999999999988888865444333 4456677777777554
No 201
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.75 E-value=0.032 Score=62.76 Aligned_cols=57 Identities=26% Similarity=0.327 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHH
Q 000518 145 ESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIR 208 (1448)
Q Consensus 145 ~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 208 (1448)
...++++..++... +-|.+.|++|+|||++|+.+++... ...+++++....+..+++
T Consensus 8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHh
Confidence 34556666666533 3466899999999999999997442 234556666665555544
No 202
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.75 E-value=0.0023 Score=65.13 Aligned_cols=105 Identities=29% Similarity=0.328 Sum_probs=57.8
Q ss_pred CCCEEeccCCCCCCCcccCCCCCCCEEEcccCCCcccchhhhc-cCccCEEeccCCCC--CCccCccccCCCCCCCEEEe
Q 000518 559 NLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGE-LTQLKLLDLSNCSK--LKVIPPNVISSLSQLEELYL 635 (1448)
Q Consensus 559 ~Lr~L~L~~~~i~~l~~i~~L~~L~~L~Ls~~~l~~LP~~i~~-L~~L~~L~Ls~~~~--l~~lp~~~l~~L~~L~~L~l 635 (1448)
+...+||++|.+..+..+..+..|.+|.+++|.|+.+-..+.. +.+|+.|.+.+|+. +.++.+ +..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p--La~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP--LASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch--hccCCccceeee
Confidence 3445556666555555566666666666666666655444443 34566666666541 222333 456667777776
Q ss_pred eCCCccccccccccccCCcChhhcCCCCCCCEEEeecC
Q 000518 636 GNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIR 673 (1448)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 673 (1448)
-+|.+.. ....-.-.+..+++|+.|+.+..
T Consensus 121 l~Npv~~--------k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEH--------KKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhc--------ccCceeEEEEecCcceEeehhhh
Confidence 6665541 11122344566777777776543
No 203
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.73 E-value=0.00012 Score=69.23 Aligned_cols=100 Identities=22% Similarity=0.311 Sum_probs=46.1
Q ss_pred ccEEEcCCCCCCCCCCchh--hcCCCCceEEEecCCcCcccCccCCCC-CCCCEEeccCCCCCCC-cccCCCCCCCEEEc
Q 000518 512 LTSLCMNPKDPFLHIPDNF--FAGMPKLRVLVLTRMKLLTLPSSFCHL-PNLESLCLDQCILGDI-AIIGNLKNLEILSL 587 (1448)
Q Consensus 512 L~~L~l~~n~~~~~~~~~~--f~~l~~Lr~L~L~~~~i~~lp~~i~~L-~~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~L 587 (1448)
+..++|+++.+ ..+++.. ..+..+|...+|++|.+.++|..|... +.+..|+|.+|.+.++ ..+..++.|+.|++
T Consensus 29 ~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchh-hHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 34455555543 2222211 234455555666666666665554332 2444444444444433 23444444444444
Q ss_pred ccCCCcccchhhhccCccCEEeccC
Q 000518 588 CCSDIEQLPREIGELTQLKLLDLSN 612 (1448)
Q Consensus 588 s~~~l~~LP~~i~~L~~L~~L~Ls~ 612 (1448)
+.|.+...|.-|..|.+|-.|+..+
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCC
Confidence 4444444444444444444444443
No 204
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.69 E-value=0.02 Score=74.74 Aligned_cols=173 Identities=16% Similarity=0.187 Sum_probs=97.7
Q ss_pred ccccccHHHHHHHHHHHHc----C---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCH
Q 000518 138 HEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDL 204 (1448)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~ 204 (1448)
...+.|.+..+++|.+.+. . ...+-+.++|++|+|||++|+++++... ..| +.+...
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~--~~f-----i~v~~~--- 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG--ANF-----IAVRGP--- 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE-----EEEehH---
Confidence 4456677777666665543 1 2234688999999999999999999865 222 222211
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCcc--------------chhhccCCCCC--CCCCc
Q 000518 205 KRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL--------------DLERTGIPFGD--VHRGC 268 (1448)
Q Consensus 205 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------------~~~~l~~~l~~--~~~gs 268 (1448)
+ ++.. +..+ ....+..+.....+..+.+|++|+++... ....+...+.. ...+.
T Consensus 522 -~----l~~~----~vGe-se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 -E----ILSK----WVGE-SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred -H----Hhhc----ccCc-HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 1 1111 1111 12344555555555678999999986431 01112112221 12344
Q ss_pred EEEEEeccchhhhhcC----cccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCCh
Q 000518 269 KILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP 332 (1448)
Q Consensus 269 ~ilvTTR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 332 (1448)
-||.||......+.+. .....+.++..+.++-.++|+.+........+. -...+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 5666776554443311 235678888899999999998776432221111 1346777777754
No 205
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.68 E-value=0.00013 Score=68.84 Aligned_cols=106 Identities=18% Similarity=0.240 Sum_probs=84.5
Q ss_pred EEEcccCCCCCCCCCC----CCCCccEEEcCCCCCCCCCCchhhcCCCCceEEEecCCcCcccCccCCCCCCCCEEeccC
Q 000518 492 AIFLHDINTGELPEGL----EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQ 567 (1448)
Q Consensus 492 ~lsl~~~~~~~lp~~~----~~~~L~~L~l~~n~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~ 567 (1448)
.+.++.|.+..+++.. ...+|...++++|.+ ..+|..+-.+++.+..|++++|.++.+|..+..++.||.|+++.
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc
Confidence 3445555555454432 566778888998887 67888776677789999999999999999999999999999999
Q ss_pred CCCCCC-cccCCCCCCCEEEcccCCCcccchh
Q 000518 568 CILGDI-AIIGNLKNLEILSLCCSDIEQLPRE 598 (1448)
Q Consensus 568 ~~i~~l-~~i~~L~~L~~L~Ls~~~l~~LP~~ 598 (1448)
|.+... ..|..|.+|-+|+..+|.+..+|..
T Consensus 110 N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 110 NPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred CccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 988654 6677799999999999988888866
No 206
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.68 E-value=0.0059 Score=66.06 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=30.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEe
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV 198 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v 198 (1448)
.++|+|..|+||||++..+..... +.|+.+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 688999999999999999998876 67888877754
No 207
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.68 E-value=0.019 Score=66.96 Aligned_cols=132 Identities=17% Similarity=0.206 Sum_probs=77.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHcc
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1448)
....+.|||..|.|||-|++++++.......=..++.+ + .++...++...+.. ...+..++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~--~----se~f~~~~v~a~~~--------~~~~~Fk~~y--- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL--T----SEDFTNDFVKALRD--------NEMEKFKEKY--- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec--c----HHHHHHHHHHHHHh--------hhHHHHHHhh---
Confidence 36789999999999999999999998743222234443 2 23333333333221 1222222222
Q ss_pred CcEEEEEcCCCCcc---chh-hccCCCCC-CCCCcEEEEEeccch---------hhhhcCcccceEEeecCChHHHHHHH
Q 000518 239 KKILVILDDIWTSL---DLE-RTGIPFGD-VHRGCKILVTSRRRD---------VLVSEMHCQNNYCVSVLNKEEAWSLF 304 (1448)
Q Consensus 239 k~~LlVlDdv~~~~---~~~-~l~~~l~~-~~~gs~ilvTTR~~~---------v~~~~~~~~~~~~l~~L~~~e~~~Lf 304 (1448)
.-=++++||++... .|+ .+...|.. ...|-.||+|++... +.. .+...-.+++.+.+.+.....+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S-R~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS-RLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH-HHhceeEEeeCCCCHHHHHHHH
Confidence 22388899987642 222 22222221 123448999886432 112 2444568999999999999999
Q ss_pred HHHh
Q 000518 305 SKVV 308 (1448)
Q Consensus 305 ~~~~ 308 (1448)
.+.+
T Consensus 254 ~kka 257 (408)
T COG0593 254 RKKA 257 (408)
T ss_pred HHHH
Confidence 9877
No 208
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.67 E-value=0.028 Score=64.31 Aligned_cols=115 Identities=20% Similarity=0.202 Sum_probs=67.6
Q ss_pred cHHHHHHHHHHHHcC----CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000518 143 SRESILNDILDALRG----PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1448)
Q Consensus 143 gR~~~~~~l~~~L~~----~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 218 (1448)
+|....+...+++.+ ...+-+.|+|..|+|||.||.++++.... +.+ .+.+++++ +++.++.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~-~g~-~v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAK-KGV-SSTLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHH-cCC-CEEEEEHH------HHHHHHHHHHhcC
Confidence 455555555555542 23467999999999999999999999862 223 34556543 4555555444211
Q ss_pred CCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc--cchhh--ccCCC-CCC-CCCcEEEEEec
Q 000518 219 FCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLER--TGIPF-GDV-HRGCKILVTSR 275 (1448)
Q Consensus 219 ~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~--l~~~l-~~~-~~gs~ilvTTR 275 (1448)
+ .....+.+ .+-=||||||+... .+|.. +...+ ... ..+-.+|+||-
T Consensus 207 ----~----~~~~l~~l--~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 207 ----S----VKEKIDAV--KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred ----c----HHHHHHHh--cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1 22333444 36779999999644 45643 32222 111 23445777774
No 209
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.67 E-value=0.012 Score=76.39 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=60.0
Q ss_pred cccccHHHHHHHHHHHHcC---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHH
Q 000518 139 EFIESRESILNDILDALRG---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1448)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 209 (1448)
..++|.+..++.+...+.. ....++.++|+.|+|||+||+.++.... ...+.+++++-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhccc---
Confidence 3456778788888777651 1345789999999999999999998762 3345565554222111
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc
Q 000518 210 EIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1448)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 251 (1448)
+.+.++.. +.-...+....+.+.+.+...-+|+||+++..
T Consensus 526 -~~~lig~~-~gyvg~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 -VSRLIGAP-PGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred -HHHHhcCC-CCCcccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 11112211 10000111223344444456679999999865
No 210
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.65 E-value=0.0044 Score=65.53 Aligned_cols=126 Identities=25% Similarity=0.204 Sum_probs=61.5
Q ss_pred HHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEE--ec--CCc--CHHH-------HHHHHH
Q 000518 146 SILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAE--VS--QTP--DLKR-------IRREIA 212 (1448)
Q Consensus 146 ~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~--v~--~~~--~~~~-------~~~~i~ 212 (1448)
..-...++.|. +..++.+.|++|+|||.||.+.+.+.-..+.|+.++++. |. +.. -+-+ ...-+.
T Consensus 7 ~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~ 84 (205)
T PF02562_consen 7 EEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIY 84 (205)
T ss_dssp HHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHH
T ss_pred HHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHH
Confidence 33344555555 456999999999999999999998776668899888763 11 111 0001 111122
Q ss_pred HHhCCCCCCCChHHHHHHH------HHHHHcc---CcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEeccc
Q 000518 213 DQLGLNFCEESDSERIMML------CNRLKRE---KKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR 277 (1448)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l------~~~l~~~---k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~~ 277 (1448)
..+..-..........+.- ...+ +| ....||+|++.+. .++..+... .+.|||||++=-..
T Consensus 85 d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i-RGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~ 156 (205)
T PF02562_consen 85 DALEELFGKEKLEELIQNGKIEIEPLAFI-RGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPS 156 (205)
T ss_dssp HHHTTTS-TTCHHHHHHTTSEEEEEGGGG-TT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE---
T ss_pred HHHHHHhChHhHHHHhhcCeEEEEehhhh-cCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCce
Confidence 2222111111111111000 0011 12 5679999999876 467776554 45899999986433
No 211
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.025 Score=70.84 Aligned_cols=105 Identities=18% Similarity=0.230 Sum_probs=61.4
Q ss_pred cccccHHHHHHHHHHHHc---------CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHH
Q 000518 139 EFIESRESILNDILDALR---------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1448)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~---------~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 209 (1448)
..++|.+..++.+.+.+. +..+.+..++||.|+|||.||++++...--. =+..+-+++|+-..-..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~--e~aliR~DMSEy~EkHs--- 565 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD--EQALIRIDMSEYMEKHS--- 565 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC--CccceeechHHHHHHHH---
Confidence 357899999999988876 2356788999999999999999999876210 03445554443322111
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHHccCcE-EEEEcCCCCc
Q 000518 210 EIADQLGLNFCEESDSERIMMLCNRLKREKKI-LVILDDIWTS 251 (1448)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~-LlVlDdv~~~ 251 (1448)
+.+-+|.. +.=---+..-.+-+..+ .++| +|.||+|...
T Consensus 566 -VSrLIGaP-PGYVGyeeGG~LTEaVR-r~PySViLlDEIEKA 605 (786)
T COG0542 566 -VSRLIGAP-PGYVGYEEGGQLTEAVR-RKPYSVILLDEIEKA 605 (786)
T ss_pred -HHHHhCCC-CCCceeccccchhHhhh-cCCCeEEEechhhhc
Confidence 22222321 11000000112333343 3555 8888999765
No 212
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.63 E-value=0.0041 Score=64.24 Aligned_cols=103 Identities=17% Similarity=0.121 Sum_probs=67.3
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000518 135 NEGHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 214 (1448)
|....++||-++.++++--...+.+.+-+.|.||+|+||||=+..+++..--...-+.+.=.+.|+...+.-+...|-.-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~F 102 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMF 102 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHH
Confidence 34566789999999998887778889999999999999999999888876522222444445555544443333332111
Q ss_pred hCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc
Q 000518 215 LGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1448)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 251 (1448)
.... -.+-.++.-.||||+.++.
T Consensus 103 AQ~k--------------v~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 103 AQKK--------------VTLPPGRHKIIILDEADSM 125 (333)
T ss_pred HHhh--------------ccCCCCceeEEEeeccchh
Confidence 0000 0011257778999998876
No 213
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.62 E-value=0.061 Score=62.19 Aligned_cols=105 Identities=20% Similarity=0.191 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEecc-chhhhhcCcccceEEeecCCh
Q 000518 225 SERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRR-RDVLVSEMHCQNNYCVSVLNK 297 (1448)
Q Consensus 225 ~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~-~~v~~~~~~~~~~~~l~~L~~ 297 (1448)
.+.++.+.+.+. .+++-++|+|+++.. ...+.+...+-...+++.+|.+|.+ ..+..........+.+.+++.
T Consensus 114 idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~ 193 (342)
T PRK06964 114 IEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAP 193 (342)
T ss_pred HHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCH
Confidence 345555555543 256678899999876 4566666666555566655555544 444432233356899999999
Q ss_pred HHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000518 298 EEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1448)
Q Consensus 298 ~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 338 (1448)
++..+.+... |. .+ ...++..++|.|.....+
T Consensus 194 ~~~~~~L~~~-~~---~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 194 EAAAAWLAAQ-GV---AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred HHHHHHHHHc-CC---Ch-----HHHHHHHcCCCHHHHHHH
Confidence 9999988765 21 11 223577889999754433
No 214
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.031 Score=67.23 Aligned_cols=154 Identities=18% Similarity=0.211 Sum_probs=82.5
Q ss_pred CccccccHHHHHHHHHHHHc------------C-CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcC
Q 000518 137 GHEFIESRESILNDILDALR------------G-PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1448)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~------------~-~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 203 (1448)
....+.|-++.+.+|-+... . +..+-|.++|++|+|||++|+++++.... .| +.+...
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~--nF-----lsvkgp-- 502 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM--NF-----LSVKGP-- 502 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC--Ce-----eeccCH--
Confidence 34455566665555554432 1 35678999999999999999999998863 34 333222
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCccc-------------hhhccCCCCCCCCCcEE
Q 000518 204 LKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD-------------LERTGIPFGDVHRGCKI 270 (1448)
Q Consensus 204 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~~~~gs~i 270 (1448)
++. .. +..+ .+..+.++.+..++--..+|.||+++.... +..+..-+........|
T Consensus 503 --EL~----sk----~vGe-SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 503 --ELF----SK----YVGE-SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred --HHH----HH----hcCc-hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcE
Confidence 111 11 1111 223444455555555668888888754410 11111112111112223
Q ss_pred EE---EeccchhhhhcCc---ccceEEeecCChHHHHHHHHHHhCC
Q 000518 271 LV---TSRRRDVLVSEMH---CQNNYCVSVLNKEEAWSLFSKVVGN 310 (1448)
Q Consensus 271 lv---TTR~~~v~~~~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~ 310 (1448)
+| |-|...+-...+. .+..+.++.=+.+--.++|+.++..
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 33 3343333332233 3456666666777778899998853
No 215
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.58 E-value=0.044 Score=63.55 Aligned_cols=177 Identities=10% Similarity=0.031 Sum_probs=99.9
Q ss_pred HHHHHHHHHHcCCC-eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCC------
Q 000518 146 SILNDILDALRGPY-VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLN------ 218 (1448)
Q Consensus 146 ~~~~~l~~~L~~~~-~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~------ 218 (1448)
...+++...+..++ ...+.+.|+.|+||+++|.+++...-=...-+. ..++.-...+.+...-..+
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGH-------KSCGHCRGCQLMQAGTHPDYYTLTP 81 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHHcCCCCCEEEEec
Confidence 35667777776544 457889999999999999999887631100000 0000001111111000000
Q ss_pred -CC-CCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEecc-chhhhhcCcccce
Q 000518 219 -FC-EESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRR-RDVLVSEMHCQNN 289 (1448)
Q Consensus 219 -~~-~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~-~~v~~~~~~~~~~ 289 (1448)
.. ..-..+.++.+.+.+. .+++-++|+|+++.. ..-+.+...+-....++.+|.+|.+ ..+..........
T Consensus 82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 82 EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccc
Confidence 00 0112334444444443 267789999998765 3445555555444456666666654 4444322233457
Q ss_pred EEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHH
Q 000518 290 YCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1448)
Q Consensus 290 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 335 (1448)
+.+.+++.+++.+.+....+. + .+.+..+++.++|.|...
T Consensus 162 ~~~~~~~~~~~~~~L~~~~~~---~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREVTM---S---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred ccCCCCCHHHHHHHHHHccCC---C---HHHHHHHHHHcCCCHHHH
Confidence 899999999999888654321 1 233668899999999644
No 216
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.57 E-value=0.021 Score=61.04 Aligned_cols=228 Identities=15% Similarity=0.100 Sum_probs=122.9
Q ss_pred cccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhc----cCCcceEEEEEecCC----------c--
Q 000518 139 EFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKE----GRIFDEVVFAEVSQT----------P-- 202 (1448)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~----~~~f~~~~wv~v~~~----------~-- 202 (1448)
..+.++++...++.......+.+-..++|+.|.||-|.+..+.+..-- +-+-+..-|.+-+.. .
T Consensus 13 ~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred hhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 345667777777776655677899999999999999999888877531 112233444332222 1
Q ss_pred ---------CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcE-EEEEcCCCCc--cchhhccCCCCCCCCCcEE
Q 000518 203 ---------DLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKI-LVILDDIWTS--LDLERTGIPFGDVHRGCKI 270 (1448)
Q Consensus 203 ---------~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~-LlVlDdv~~~--~~~~~l~~~l~~~~~gs~i 270 (1448)
.-+-+.++|++.+.....-+ ....+.| ++|+-.+++. +.-.++..-.......+|+
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~qie------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~Rl 160 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQIE------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRL 160 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcchh------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceE
Confidence 11233344444332211100 0012334 4455555443 2333333322223456677
Q ss_pred EEEecc--chhhhhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHHHHhcCC---
Q 000518 271 LVTSRR--RDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNK--- 345 (1448)
Q Consensus 271 lvTTR~--~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~--- 345 (1448)
|+..-+ +-+.. .....-.++++..+++|-...+++.+..+.-.- ..+++.+|+++++|.-.-...+-..++-+
T Consensus 161 Il~cns~SriIep-IrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l-p~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~ 238 (351)
T KOG2035|consen 161 ILVCNSTSRIIEP-IRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL-PKELLKRIAEKSNRNLRRALLMLEAVRVNNEP 238 (351)
T ss_pred EEEecCcccchhH-HhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC-cHHHHHHHHHHhcccHHHHHHHHHHHHhcccc
Confidence 763221 11111 112234678899999999999998884332211 16789999999999765444444443311
Q ss_pred --------ChHHHHHHHHHHhhhccCCcchHHHHHhHHHHHHcc
Q 000518 346 --------PLFVWKKALQELRFSARNFTGLEALLGSTIELIYNY 381 (1448)
Q Consensus 346 --------~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~ 381 (1448)
...+|+.++.+.............++ .+-..-|+-
T Consensus 239 ~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~-~vR~~LYeL 281 (351)
T KOG2035|consen 239 FTANSQVIPKPDWEIYIQEIARVILKEQSPAKLL-EVRGRLYEL 281 (351)
T ss_pred ccccCCCCCCccHHHHHHHHHHHHHhccCHHHHH-HHHHHHHHH
Confidence 23459999888774332223333333 333444443
No 217
>PRK07261 topology modulation protein; Provisional
Probab=96.53 E-value=0.0062 Score=63.52 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=25.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhcc-CCcceEEE
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAKEG-RIFDEVVF 195 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~~~-~~f~~~~w 195 (1448)
.|.|+|++|+||||||+++....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48999999999999999998775421 23455555
No 218
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.49 E-value=0.057 Score=64.83 Aligned_cols=88 Identities=23% Similarity=0.286 Sum_probs=50.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHcc
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1448)
..+|+|+|++|+||||++..++.....+.....+..++... .....+-++...+.++...........+....+.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc--
Confidence 47899999999999999999998765332233455555432 112233333344444443332223333444444443
Q ss_pred CcEEEEEcCCC
Q 000518 239 KKILVILDDIW 249 (1448)
Q Consensus 239 k~~LlVlDdv~ 249 (1448)
+.-+||+|...
T Consensus 428 ~~DLVLIDTaG 438 (559)
T PRK12727 428 DYKLVLIDTAG 438 (559)
T ss_pred cCCEEEecCCC
Confidence 45588888874
No 219
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.051 Score=58.53 Aligned_cols=182 Identities=20% Similarity=0.220 Sum_probs=96.3
Q ss_pred cccccHHHHHHHHHHHHc----------C--CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHH
Q 000518 139 EFIESRESILNDILDALR----------G--PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKR 206 (1448)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~----------~--~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~ 206 (1448)
..+.|-+...+.|.+... . ...+-|.++|++|+||+.||++|+..... -|++||...-+
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-------TFFSvSSSDLv-- 203 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-------TFFSVSSSDLV-- 203 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-------ceEEeehHHHH--
Confidence 344555555555555422 2 34688999999999999999999987651 23455543211
Q ss_pred HHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc---------cchhhcc----CC---CCCCCCCcEE
Q 000518 207 IRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS---------LDLERTG----IP---FGDVHRGCKI 270 (1448)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~---------~~~~~l~----~~---l~~~~~gs~i 270 (1448)
...- .+ ....+..+.+-.++.|.-.|.+|+|+.. +.-..|. .. ......|.-|
T Consensus 204 ------SKWm----GE-SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLV 272 (439)
T KOG0739|consen 204 ------SKWM----GE-SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLV 272 (439)
T ss_pred ------HHHh----cc-HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEE
Confidence 1111 11 2234444555555679999999998643 1111111 11 1223345556
Q ss_pred EEEeccchhhhhcCc--ccceEEeecCChHHH-HHHHHHHhCCCCCCccHHHHHHHHHHHhCC---ChHHHHHHHHHh
Q 000518 271 LVTSRRRDVLVSEMH--CQNNYCVSVLNKEEA-WSLFSKVVGNCVEDPDLQTVAIQVANECGG---LPIAILTVARTL 342 (1448)
Q Consensus 271 lvTTR~~~v~~~~~~--~~~~~~l~~L~~~e~-~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~g---lPlai~~~~~~l 342 (1448)
+-.|..+-+.++++. ....|-+ ||.+..| ..+|+-++|+....- .++-.++++++..| .-.+|++--++|
T Consensus 273 LgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~~L-T~~d~~eL~~kTeGySGsDisivVrDalm 348 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPHVL-TEQDFKELARKTEGYSGSDISIVVRDALM 348 (439)
T ss_pred EecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCcccc-chhhHHHHHhhcCCCCcCceEEEehhhhh
Confidence 667877766665222 1223333 4555444 456777777644321 12224455555544 344444433333
No 220
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.048 Score=64.65 Aligned_cols=131 Identities=20% Similarity=0.290 Sum_probs=82.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccC
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREK 239 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 239 (1448)
..=|.+||++|+|||-||++|+|.... . |++|... +++.... | + ....++.+..+.+..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~--N-----FisVKGP----ELlNkYV---G-----E-SErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGA--N-----FISVKGP----ELLNKYV---G-----E-SERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccC--c-----eEeecCH----HHHHHHh---h-----h-HHHHHHHHHHHhhcCC
Confidence 346889999999999999999999873 3 3544432 2222111 1 1 2334556666666689
Q ss_pred cEEEEEcCCCCcc-------c------hhhccCCCCC--CCCCcEEEEEeccchhhhhcC---c-ccceEEeecCChHHH
Q 000518 240 KILVILDDIWTSL-------D------LERTGIPFGD--VHRGCKILVTSRRRDVLVSEM---H-CQNNYCVSVLNKEEA 300 (1448)
Q Consensus 240 ~~LlVlDdv~~~~-------~------~~~l~~~l~~--~~~gs~ilvTTR~~~v~~~~~---~-~~~~~~l~~L~~~e~ 300 (1448)
.++|.||+++... . ...+..-+.. ...|.-||-.|-.+++.+.++ | -+...-++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 9999999986541 1 2222222221 345667777776666655422 2 234556666678888
Q ss_pred HHHHHHHhCC
Q 000518 301 WSLFSKVVGN 310 (1448)
Q Consensus 301 ~~Lf~~~~~~ 310 (1448)
.++++....+
T Consensus 685 ~~ILK~~tkn 694 (802)
T KOG0733|consen 685 VAILKTITKN 694 (802)
T ss_pred HHHHHHHhcc
Confidence 8999888863
No 221
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.40 E-value=0.0016 Score=68.80 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=18.7
Q ss_pred cCCCCCCCEEEcccCCCc-ccch----hhhccCccCEEeccCCC
Q 000518 576 IGNLKNLEILSLCCSDIE-QLPR----EIGELTQLKLLDLSNCS 614 (1448)
Q Consensus 576 i~~L~~L~~L~Ls~~~l~-~LP~----~i~~L~~L~~L~Ls~~~ 614 (1448)
+-++++|+..+||.|.+. +.|. -|++-+.|.||.+++|.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 444555555555555443 2222 24444555555555553
No 222
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.39 E-value=0.0078 Score=77.63 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=86.5
Q ss_pred ccccHHHHHHHHHHHHc------CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHH
Q 000518 140 FIESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1448)
Q Consensus 140 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 213 (1448)
..+|.++.+++|++++. .....++.++|++|+||||+|+.++.... ..| +-+.++...+..++...-..
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~--~~~---~~i~~~~~~d~~~i~g~~~~ 397 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG--RKY---VRMALGGVRDEAEIRGHRRT 397 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC--CCE---EEEEcCCCCCHHHhccchhc
Confidence 46789999999998876 13456899999999999999999998764 223 22333443343332211100
Q ss_pred HhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCcc-c-----hhhccCCCCC---------------CCCCcEEEE
Q 000518 214 QLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL-D-----LERTGIPFGD---------------VHRGCKILV 272 (1448)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-~-----~~~l~~~l~~---------------~~~gs~ilv 272 (1448)
..+ ......++.+. ... ..+-+++||+++... + ...+...+.+ .-.+.-+|.
T Consensus 398 ~~g-----~~~G~~~~~l~-~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~ 470 (784)
T PRK10787 398 YIG-----SMPGKLIQKMA-KVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVA 470 (784)
T ss_pred cCC-----CCCcHHHHHHH-hcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEE
Confidence 011 11111111121 111 244578999986541 1 1122111111 112333444
Q ss_pred EeccchhhhhcCcccceEEeecCChHHHHHHHHHHh
Q 000518 273 TSRRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1448)
Q Consensus 273 TTR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1448)
|+....+.....+....+.+.+++++|-.++.+++.
T Consensus 471 TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 471 TSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred cCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 554444333234445678999999999888877765
No 223
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.38 E-value=0.0089 Score=78.11 Aligned_cols=106 Identities=18% Similarity=0.225 Sum_probs=60.3
Q ss_pred cccccHHHHHHHHHHHHc---------CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHH
Q 000518 139 EFIESRESILNDILDALR---------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1448)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~---------~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 209 (1448)
..++|.+..++.+.+.+. +....++.++|+.|+|||.+|+.++...... .+..+-++++.-.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEAH---- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhhh----
Confidence 457899999999888874 1234589999999999999999998876411 2222333333211111
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc
Q 000518 210 EIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1448)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 251 (1448)
.+.+-++.. +.-...+....+.+.+.+...-+|+||++...
T Consensus 640 ~~~~l~g~~-~gyvg~~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 640 TVSRLKGSP-PGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hhccccCCC-CCcccccccchHHHHHHhCCCcEEEEechhhc
Confidence 111112211 11000001112344455567789999999754
No 224
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.2 Score=61.45 Aligned_cols=95 Identities=22% Similarity=0.310 Sum_probs=67.3
Q ss_pred CccccccHHHHHHHHHHHHc---------CC---CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCH
Q 000518 137 GHEFIESRESILNDILDALR---------GP---YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDL 204 (1448)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~---------~~---~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~ 204 (1448)
.-.++.|-++.+.+|.+-+. .. +..=|.++|++|+|||-+|++|+.+..- -|++|-..
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSVKGP--- 739 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSVKGP--- 739 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-------eEEeecCH---
Confidence 34567788888888887654 12 2446889999999999999999988752 24555443
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc
Q 000518 205 KRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1448)
Q Consensus 205 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 251 (1448)
+++.... | ..++.++++.++.++.++++|.||++++.
T Consensus 740 -ELLNMYV---G------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 -ELLNMYV---G------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred -HHHHHHh---c------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 2222221 1 23456778888888889999999998765
No 225
>PRK08181 transposase; Validated
Probab=96.37 E-value=0.0056 Score=68.24 Aligned_cols=105 Identities=19% Similarity=0.108 Sum_probs=58.1
Q ss_pred HHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHH
Q 000518 153 DALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLC 232 (1448)
Q Consensus 153 ~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 232 (1448)
+|+. +..-+.++|+.|+|||.||..+++....+ ...++|++ ..+++..+..... .. ......
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~~----~~----~~~~~l 162 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVARR----EL----QLESAI 162 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHHh----CC----cHHHHH
Confidence 4554 23459999999999999999999877532 23455554 3455555543221 11 112233
Q ss_pred HHHHccCcEEEEEcCCCCc--cch-h-hccCCCCCCCCCcEEEEEeccc
Q 000518 233 NRLKREKKILVILDDIWTS--LDL-E-RTGIPFGDVHRGCKILVTSRRR 277 (1448)
Q Consensus 233 ~~l~~~k~~LlVlDdv~~~--~~~-~-~l~~~l~~~~~gs~ilvTTR~~ 277 (1448)
+.+. +--|||+||+... .+| . .+...+.....+..+||||...
T Consensus 163 ~~l~--~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 163 AKLD--KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHHh--cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 3442 4569999999644 122 1 1222222111123588888644
No 226
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.36 E-value=0.018 Score=61.25 Aligned_cols=87 Identities=22% Similarity=0.265 Sum_probs=56.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCC----CCChHHHHHHHHHHH
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFC----EESDSERIMMLCNRL 235 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~~~l 235 (1448)
+||.++|+.|+||||.+..++...+.+ -..+..++... .....+-++..++.++.... ..+..+...+..+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 689999999999999999999988744 44566677643 23456667788888886532 223344444444444
Q ss_pred HccCcEEEEEcCCC
Q 000518 236 KREKKILVILDDIW 249 (1448)
Q Consensus 236 ~~~k~~LlVlDdv~ 249 (1448)
...+.=+|++|-..
T Consensus 80 ~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 80 RKKGYDLVLIDTAG 93 (196)
T ss_dssp HHTTSSEEEEEE-S
T ss_pred hhcCCCEEEEecCC
Confidence 43344577788653
No 227
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.27 E-value=0.027 Score=73.48 Aligned_cols=174 Identities=18% Similarity=0.198 Sum_probs=94.0
Q ss_pred ccccccHHHHHHHHHHHHc----C---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCH
Q 000518 138 HEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDL 204 (1448)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~ 204 (1448)
...+.|.++.++++.+++. . ...+-|.++|++|+|||++|+.+++... ..| +.++..
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~--~~~-----i~i~~~--- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG--AYF-----ISINGP--- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC--CeE-----EEEecH---
Confidence 4457799888888877653 1 2235688999999999999999998764 222 222211
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCcc-------------chhhccCCCCC-CCCCcEE
Q 000518 205 KRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL-------------DLERTGIPFGD-VHRGCKI 270 (1448)
Q Consensus 205 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~~~~l~~~l~~-~~~gs~i 270 (1448)
++. .. ... .....+..+.+........+|++||++... ....+...+.. ...+..+
T Consensus 247 -~i~----~~----~~g-~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 -EIM----SK----YYG-ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred -HHh----cc----ccc-HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 111 00 000 112233444444444667899999985431 01112211211 1223344
Q ss_pred EE-EeccchhhhhcC----cccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChH
Q 000518 271 LV-TSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI 333 (1448)
Q Consensus 271 lv-TTR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 333 (1448)
+| ||....-.+... .-...+.+...+.++-.++++.+........+ .....+++.+.|.--
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d--~~l~~la~~t~G~~g 382 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED--VDLDKLAEVTHGFVG 382 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc--cCHHHHHHhCCCCCH
Confidence 44 444332111111 12346778888888888888876643221111 124567788887653
No 228
>PHA00729 NTP-binding motif containing protein
Probab=96.26 E-value=0.021 Score=61.17 Aligned_cols=35 Identities=31% Similarity=0.355 Sum_probs=28.4
Q ss_pred HHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 000518 150 DILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1448)
Q Consensus 150 ~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~ 184 (1448)
++++.+...+...|.|.|.+|+||||||..++++.
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555555566689999999999999999999875
No 229
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.26 E-value=0.016 Score=63.15 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=38.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHH
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 210 (1448)
-.++.|+|++|+|||++|.+++.... ..-..++|++... ++..++.+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~-~~~~rl~~~ 59 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEG-LSPERFKQI 59 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCC-CCHHHHHHH
Confidence 47999999999999999999998775 2346789999876 666665543
No 230
>PRK04132 replication factor C small subunit; Provisional
Probab=96.21 E-value=0.065 Score=68.75 Aligned_cols=156 Identities=10% Similarity=0.013 Sum_probs=94.7
Q ss_pred Ec--CCCchHHHHHHHHHHHHhccCCc-ceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEE
Q 000518 166 YG--MAGIGKTTLVKEVARLAKEGRIF-DEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKIL 242 (1448)
Q Consensus 166 ~G--~gG~GKTtLa~~~~~~~~~~~~f-~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~L 242 (1448)
.| |.++||||+|..++++.--. .+ ..++-++.+...++..+. +++..+....+ +...+.-+
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~--------------~~~~~~KV 633 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFGE-NWRHNFLELNASDERGINVIR-EKVKEFARTKP--------------IGGASFKI 633 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC--------------cCCCCCEE
Confidence 37 88999999999999986321 22 245667777665555443 33322211100 00125679
Q ss_pred EEEcCCCCc--cchhhccCCCCCCCCCcEEEEEeccc-hhhhhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHH
Q 000518 243 VILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQT 319 (1448)
Q Consensus 243 lVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~ 319 (1448)
+|+|+++.. .+.+.+...+......+++|.+|.+. .+..........+++.+++.++-...+.+.+..+...- ..+
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i-~~e 712 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL-TEE 712 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC-CHH
Confidence 999999876 35555555554334456666655443 33332233456899999999999888887764322111 145
Q ss_pred HHHHHHHHhCCChHHHHHH
Q 000518 320 VAIQVANECGGLPIAILTV 338 (1448)
Q Consensus 320 ~~~~i~~~~~glPlai~~~ 338 (1448)
....|++.++|-+..+..+
T Consensus 713 ~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 713 GLQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHHcCCCHHHHHHH
Confidence 6789999999988544433
No 231
>PRK12377 putative replication protein; Provisional
Probab=96.19 E-value=0.024 Score=62.39 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=48.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHcc
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1448)
+...+.++|+.|+|||.||.++++....+ ...++++++. ++...+-...... . ....+.+.+ .
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~---~----~~~~~l~~l--~ 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG---Q----SGEKFLQEL--C 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc---c----hHHHHHHHh--c
Confidence 34679999999999999999999998632 3345666543 4444444333211 0 112334444 3
Q ss_pred CcEEEEEcCCCC
Q 000518 239 KKILVILDDIWT 250 (1448)
Q Consensus 239 k~~LlVlDdv~~ 250 (1448)
+--||||||+..
T Consensus 163 ~~dLLiIDDlg~ 174 (248)
T PRK12377 163 KVDLLVLDEIGI 174 (248)
T ss_pred CCCEEEEcCCCC
Confidence 677999999944
No 232
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.18 E-value=0.0063 Score=69.56 Aligned_cols=46 Identities=17% Similarity=0.207 Sum_probs=40.4
Q ss_pred ccccHHHHHHHHHHHHc------CCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 140 FIESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 140 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
.++|.++.++++++++. +...++++++|++|+||||||..+++...
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 58899999999999886 23458999999999999999999999885
No 233
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.013 Score=68.03 Aligned_cols=93 Identities=24% Similarity=0.297 Sum_probs=61.3
Q ss_pred cccccHHHHHHHHHHHHcCC--------C-eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHH
Q 000518 139 EFIESRESILNDILDALRGP--------Y-VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1448)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~~--------~-~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 209 (1448)
.++..-+.++++|++.|++. + .+=|.++|++|+|||-||++++-...+- | |......|+
T Consensus 307 kG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFd------ 374 (752)
T KOG0734|consen 307 KGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFD------ 374 (752)
T ss_pred cChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchh------
Confidence 34444567889999999853 2 3568899999999999999999887642 2 222222332
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc
Q 000518 210 EIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1448)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 251 (1448)
++.-.. -...++.+....+..-++.|.+|+++..
T Consensus 375 Em~VGv--------GArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 375 EMFVGV--------GARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred hhhhcc--------cHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 111111 1235566666666678899999998654
No 234
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.11 E-value=0.018 Score=71.53 Aligned_cols=49 Identities=31% Similarity=0.398 Sum_probs=39.3
Q ss_pred CccccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
.+..++|++..++.+...+......-+.|+|+.|+|||++|+.+++...
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 3556889998888888776655445678999999999999999987643
No 235
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.09 E-value=0.045 Score=62.20 Aligned_cols=88 Identities=20% Similarity=0.208 Sum_probs=50.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC-cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHc
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-PDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1448)
+.++++|+|++|+||||++..++.....+..-..+..|+.... ....+-++...+.++...........+....+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~- 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR- 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-
Confidence 3469999999999999999999988763311124555654432 12333444445555544433333333444444443
Q ss_pred cCcEEEEEcCC
Q 000518 238 EKKILVILDDI 248 (1448)
Q Consensus 238 ~k~~LlVlDdv 248 (1448)
..=+||+|..
T Consensus 272 -~~d~vliDt~ 281 (282)
T TIGR03499 272 -DKDLILIDTA 281 (282)
T ss_pred -CCCEEEEeCC
Confidence 3347777754
No 236
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.06 E-value=0.02 Score=75.48 Aligned_cols=116 Identities=19% Similarity=0.188 Sum_probs=64.6
Q ss_pred cccccHHHHHHHHHHHHcC---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHH
Q 000518 139 EFIESRESILNDILDALRG---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1448)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 209 (1448)
..++|.+..++.+...+.. ....++.++|+.|+|||++|+.+.....- .-...+.++++.-.+...+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~--~~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD--DEDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC--CCCcEEEEechhhcccchH--
Confidence 3578888889988888762 12457889999999999999999987641 1223444555443221111
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc--cchhhccCCC
Q 000518 210 EIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPF 261 (1448)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l 261 (1448)
.+-++.. +.-...+....+...+.+....+|+||++... +.+..+...+
T Consensus 641 --~~l~g~~-~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l 691 (852)
T TIGR03346 641 --ARLIGAP-PGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVL 691 (852)
T ss_pred --HHhcCCC-CCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHH
Confidence 1111211 11000001112333444345568999999765 3344444333
No 237
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.05 E-value=0.017 Score=64.18 Aligned_cols=90 Identities=23% Similarity=0.259 Sum_probs=55.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCC----cceEEEEEecCCcCHHHHHHHHHHHhCCCCCC----------CC--
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRI----FDEVVFAEVSQTPDLKRIRREIADQLGLNFCE----------ES-- 223 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~----------~~-- 223 (1448)
-.++.|+|++|+|||++|.+++........ -..++|++....++..++.+ +++..+..... .+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCCHH
Confidence 469999999999999999999866432221 36789999888777655443 33333321100 01
Q ss_pred -hHHHHHHHHHHHHcc-CcEEEEEcCCCC
Q 000518 224 -DSERIMMLCNRLKRE-KKILVILDDIWT 250 (1448)
Q Consensus 224 -~~~~~~~l~~~l~~~-k~~LlVlDdv~~ 250 (1448)
.......+.+.+.+. +--+||+|.+..
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 112223344444444 667888888743
No 238
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.05 E-value=0.036 Score=61.86 Aligned_cols=55 Identities=24% Similarity=0.270 Sum_probs=41.7
Q ss_pred ccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHH-HhccCCcceEE
Q 000518 140 FIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARL-AKEGRIFDEVV 194 (1448)
Q Consensus 140 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~-~~~~~~f~~~~ 194 (1448)
++-+|..+-.--+++|.++++..|.+.|.+|+|||-||-+..-. .-.++.|+.++
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Kii 280 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKII 280 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEE
Confidence 44567666666778888999999999999999999999877633 33455666544
No 239
>PRK06526 transposase; Provisional
Probab=96.05 E-value=0.0063 Score=67.51 Aligned_cols=74 Identities=22% Similarity=0.187 Sum_probs=43.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccC
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREK 239 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 239 (1448)
..-+.|+|++|+|||+||..++.....+ .+ .+.|+ +..++...+..... .. ........+ .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~-g~-~v~f~------t~~~l~~~l~~~~~----~~----~~~~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA-GH-RVLFA------TAAQWVARLAAAHH----AG----RLQAELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC-CC-chhhh------hHHHHHHHHHHHHh----cC----cHHHHHHHh--cc
Confidence 3468999999999999999999877532 22 23333 33445544433211 11 111222233 24
Q ss_pred cEEEEEcCCCCc
Q 000518 240 KILVILDDIWTS 251 (1448)
Q Consensus 240 ~~LlVlDdv~~~ 251 (1448)
.-+||+||+...
T Consensus 160 ~dlLIIDD~g~~ 171 (254)
T PRK06526 160 YPLLIVDEVGYI 171 (254)
T ss_pred CCEEEEcccccC
Confidence 568999999654
No 240
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.00 E-value=0.023 Score=74.70 Aligned_cols=106 Identities=17% Similarity=0.193 Sum_probs=59.7
Q ss_pred cccccHHHHHHHHHHHHcC---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHH
Q 000518 139 EFIESRESILNDILDALRG---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1448)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 209 (1448)
..++|.+..++.+...+.. ....++.++|+.|+|||+||+.+++..--. -...+-++.++-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccH--
Confidence 4577989889998887751 124567899999999999999999875311 123344444432221111
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc
Q 000518 210 EIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1448)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 251 (1448)
.+-++.. +.-...+....+.+.+.+....+|+||+++..
T Consensus 585 --~~l~g~~-~gyvg~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 585 --SKLIGSP-PGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred --HHhcCCC-CcccCcCccchHHHHHHhCCCeEEEECChhhC
Confidence 1111211 00000011123344454445578999999765
No 241
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.99 E-value=0.096 Score=60.52 Aligned_cols=165 Identities=13% Similarity=0.031 Sum_probs=83.5
Q ss_pred HHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc---------------------CCcceEEEEEecCCcCHHH
Q 000518 148 LNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEG---------------------RIFDEVVFAEVSQTPDLKR 206 (1448)
Q Consensus 148 ~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~---------------------~~f~~~~wv~v~~~~~~~~ 206 (1448)
.+++.+. .+.-...+.++|+.|+||||+|..++...-=. .|.|. .++.-..... +
T Consensus 10 w~~l~~~-~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~-~~~~p~~~~~-~- 85 (325)
T PRK08699 10 WRQIAEH-WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDF-YEITPLSDEP-E- 85 (325)
T ss_pred HHHHHHh-cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCE-EEEecccccc-c-
Confidence 3444443 23334578899999999999999999875310 11121 1111100000 0
Q ss_pred HHHHHHHHhCCCCCCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCcc--chhhccCCCCCCCCCcEEEEEeccch-h
Q 000518 207 IRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTSRRRD-V 279 (1448)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTTR~~~-v 279 (1448)
.+.....-..+.++.+.+.+. .+++-++|+|++...+ .-..+...+.....++.+|++|.+.. +
T Consensus 86 ---------~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~l 156 (325)
T PRK08699 86 ---------NGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKV 156 (325)
T ss_pred ---------ccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhC
Confidence 000000012334444444443 1455566778876652 22222222222223565666776654 3
Q ss_pred hhhcCcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHH
Q 000518 280 LVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1448)
Q Consensus 280 ~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 334 (1448)
..........+.+.+++.+++.+.+... |. ... . ..+..++|-|+.
T Consensus 157 l~ti~SRc~~~~~~~~~~~~~~~~L~~~-~~---~~~-~----~~l~~~~g~p~~ 202 (325)
T PRK08699 157 LPTIKSRCRKMVLPAPSHEEALAYLRER-GV---AEP-E----ERLAFHSGAPLF 202 (325)
T ss_pred hHHHHHHhhhhcCCCCCHHHHHHHHHhc-CC---CcH-H----HHHHHhCCChhh
Confidence 3311233457889999999998888653 21 111 1 113568898854
No 242
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.98 E-value=0.011 Score=61.92 Aligned_cols=75 Identities=29% Similarity=0.329 Sum_probs=45.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHcc
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1448)
+..-+.++|+.|+|||.||..+++....+ .+ .+.|+. ..+++..+-. ...... .....+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~-g~-~v~f~~------~~~L~~~l~~----~~~~~~----~~~~~~~l~-- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRK-GY-SVLFIT------ASDLLDELKQ----SRSDGS----YEELLKRLK-- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHT-T---EEEEE------HHHHHHHHHC----CHCCTT----HCHHHHHHH--
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccC-Cc-ceeEee------cCceeccccc----cccccc----hhhhcCccc--
Confidence 34579999999999999999999887642 22 355664 3444444432 211111 123344553
Q ss_pred CcEEEEEcCCCCc
Q 000518 239 KKILVILDDIWTS 251 (1448)
Q Consensus 239 k~~LlVlDdv~~~ 251 (1448)
+-=||||||+...
T Consensus 108 ~~dlLilDDlG~~ 120 (178)
T PF01695_consen 108 RVDLLILDDLGYE 120 (178)
T ss_dssp TSSCEEEETCTSS
T ss_pred cccEeccccccee
Confidence 5568889998654
No 243
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.97 E-value=0.12 Score=58.97 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=25.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 000518 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1448)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~~~~~~~~ 186 (1448)
.....++|||++|+|||.+|+++++....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 34579999999999999999999999763
No 244
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.051 Score=65.53 Aligned_cols=157 Identities=15% Similarity=0.139 Sum_probs=86.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC--cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHcc
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT--PDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1448)
.-|.|.|+.|+|||+||+++++... ++..-.+..|+++.- ...+.+++.+..-+. +.+ ..
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfs----------------e~~-~~ 493 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFS----------------EAL-WY 493 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHHH----------------HHH-hh
Confidence 4689999999999999999999887 555556667776543 234444444332211 111 25
Q ss_pred CcEEEEEcCCCCc--------cchhh----ccCCCC-----CCCCCc--EEEEEeccchhhhh----cCcccceEEeecC
Q 000518 239 KKILVILDDIWTS--------LDLER----TGIPFG-----DVHRGC--KILVTSRRRDVLVS----EMHCQNNYCVSVL 295 (1448)
Q Consensus 239 k~~LlVlDdv~~~--------~~~~~----l~~~l~-----~~~~gs--~ilvTTR~~~v~~~----~~~~~~~~~l~~L 295 (1448)
.+-+|||||++-. .+|.. +...+. ....+. ++|.|.....-... ..-...++++..+
T Consensus 494 ~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap 573 (952)
T KOG0735|consen 494 APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAP 573 (952)
T ss_pred CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCc
Confidence 7889999998533 11211 111110 122333 34445443332222 1223446788888
Q ss_pred ChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCC-hHHHH
Q 000518 296 NKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGL-PIAIL 336 (1448)
Q Consensus 296 ~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~ 336 (1448)
...+-.++++......... ...+...-++.+|+|. |.-+.
T Consensus 574 ~~~~R~~IL~~~~s~~~~~-~~~~dLd~ls~~TEGy~~~DL~ 614 (952)
T KOG0735|consen 574 AVTRRKEILTTIFSKNLSD-ITMDDLDFLSVKTEGYLATDLV 614 (952)
T ss_pred chhHHHHHHHHHHHhhhhh-hhhHHHHHHHHhcCCccchhHH
Confidence 8887777776665322211 1122233477788774 44333
No 245
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.96 E-value=0.018 Score=73.73 Aligned_cols=102 Identities=14% Similarity=0.201 Sum_probs=59.0
Q ss_pred ccccHHHHHHHHHHHHcC---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHH
Q 000518 140 FIESRESILNDILDALRG---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1448)
Q Consensus 140 ~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 210 (1448)
.++|.++.++.+.+.+.. .....+.++|+.|+|||++|+.++.... ...+.+++++-.....
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~-----~~~i~id~se~~~~~~---- 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT---- 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC-----CCcEEeechhhccccc----
Confidence 467888888888887651 2345789999999999999999988763 2234445443222111
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc
Q 000518 211 IADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1448)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 251 (1448)
+.+-++....-.. .+....+.+.+.+....+|+||+++..
T Consensus 530 ~~~LiG~~~gyvg-~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAPPGYVG-FDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCCCCccc-ccccchHHHHHHhCCCcEEEeccHhhh
Confidence 1111222100000 001112233344456679999999876
No 246
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.94 E-value=0.034 Score=65.37 Aligned_cols=138 Identities=13% Similarity=0.086 Sum_probs=80.9
Q ss_pred cccHHHHHHHHHHHHc-CCCeE-EEEEEcCCCchHHHHHHHHHHHHhccC-------------------CcceEEEEEec
Q 000518 141 IESRESILNDILDALR-GPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGR-------------------IFDEVVFAEVS 199 (1448)
Q Consensus 141 ~~gR~~~~~~l~~~L~-~~~~~-vi~I~G~gG~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~v~ 199 (1448)
+++-+....++..+.. ..+.+ .+.++|+.|+||||+|.++++..--.. ....+..++-+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4566667777777766 33444 499999999999999999999875211 12334445444
Q ss_pred CCcC---HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCcc--chhhccCCCCCCCCCcEEEEEe
Q 000518 200 QTPD---LKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTS 274 (1448)
Q Consensus 200 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTT 274 (1448)
.... ..+.++++.+....... .++.-++|+|+++... .-..+...+......+.+|++|
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 4443 34444445444432211 2578899999998762 3344444444445567777777
Q ss_pred ccc-hhhhhcCcccceEEeec
Q 000518 275 RRR-DVLVSEMHCQNNYCVSV 294 (1448)
Q Consensus 275 R~~-~v~~~~~~~~~~~~l~~ 294 (1448)
... .+..........+++.+
T Consensus 147 n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 147 NDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred CChhhccchhhhcceeeecCC
Confidence 633 33221122234566655
No 247
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.93 E-value=0.0065 Score=59.48 Aligned_cols=23 Identities=43% Similarity=0.544 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~ 184 (1448)
||+|.|++|+||||+|+++++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 248
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.016 Score=63.31 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=29.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc--CCcceEEEEEe
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEG--RIFDEVVFAEV 198 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~--~~f~~~~wv~v 198 (1448)
-++|.++||+|+|||+|++++++...++ .+|....-+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi 217 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI 217 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE
Confidence 3789999999999999999999987653 34444444444
No 249
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.85 E-value=0.4 Score=56.98 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=28.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEe
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV 198 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v 198 (1448)
...+|.++|+.|+||||+|..++...+.+ .+ .+..|+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~-G~-kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK-GF-KPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CC-CEEEEcC
Confidence 35799999999999999999999877633 22 3444443
No 250
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.85 E-value=0.065 Score=61.80 Aligned_cols=90 Identities=18% Similarity=0.211 Sum_probs=50.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC-cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHc
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-PDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1448)
+.++|+|+|++|+||||++..++.....+ .+ .+..++.... ....+-++..++.++...........+......+.+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~-Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK-KK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc-CC-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 34799999999999999999999877532 22 3444554322 122233334444555443322233333344444442
Q ss_pred c-CcEEEEEcCCCC
Q 000518 238 E-KKILVILDDIWT 250 (1448)
Q Consensus 238 ~-k~~LlVlDdv~~ 250 (1448)
. +.=+|++|-...
T Consensus 318 ~~~~DvVLIDTaGR 331 (436)
T PRK11889 318 EARVDYILIDTAGK 331 (436)
T ss_pred ccCCCEEEEeCccc
Confidence 1 234677787643
No 251
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.83 E-value=0.03 Score=65.11 Aligned_cols=90 Identities=20% Similarity=0.198 Sum_probs=54.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHcc
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1448)
-.+++++|+.|+||||++..++.....+.....+..++... .....+-++...+.++..................+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-- 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-- 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc--
Confidence 46899999999999999999998864222223455555332 234455566666666665433222222233334443
Q ss_pred CcEEEEEcCCCCc
Q 000518 239 KKILVILDDIWTS 251 (1448)
Q Consensus 239 k~~LlVlDdv~~~ 251 (1448)
++-+|++|.....
T Consensus 215 ~~DlVLIDTaG~~ 227 (374)
T PRK14722 215 NKHMVLIDTIGMS 227 (374)
T ss_pred CCCEEEEcCCCCC
Confidence 4456779987543
No 252
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.81 E-value=0.036 Score=63.15 Aligned_cols=85 Identities=18% Similarity=0.260 Sum_probs=54.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCC------CCChHHHHHHHH
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFC------EESDSERIMMLC 232 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 232 (1448)
.-+++-|+|++|+||||||.+++..... .-..++||+..+.++.. .+++++.+.. .....+....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~--~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 3469999999999999999999887753 23567799887766653 3445544311 112223333333
Q ss_pred HHHHccCcEEEEEcCCCC
Q 000518 233 NRLKREKKILVILDDIWT 250 (1448)
Q Consensus 233 ~~l~~~k~~LlVlDdv~~ 250 (1448)
..+.++.--+||+|-|..
T Consensus 127 ~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHhhccCCcEEEEcchhh
Confidence 333445677999999853
No 253
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.78 E-value=0.0046 Score=66.01 Aligned_cols=83 Identities=28% Similarity=0.305 Sum_probs=40.6
Q ss_pred CCCCCEEeccCCCCCCCcccCCCCCCCEEEcccC--CCc-ccchhhhccCccCEEeccCCCC--CCccCccccCCCCCCC
Q 000518 557 LPNLESLCLDQCILGDIAIIGNLKNLEILSLCCS--DIE-QLPREIGELTQLKLLDLSNCSK--LKVIPPNVISSLSQLE 631 (1448)
Q Consensus 557 L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~Ls~~--~l~-~LP~~i~~L~~L~~L~Ls~~~~--l~~lp~~~l~~L~~L~ 631 (1448)
+..|+.|++.++.++.+..+-.|++|++|.++.| .+. .++....++++|++|++++|+. +..+++ +..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchh
Confidence 3344444444444444455555555555555555 222 3444444446666666665541 122332 34555555
Q ss_pred EEEeeCCCcc
Q 000518 632 ELYLGNTSVE 641 (1448)
Q Consensus 632 ~L~l~~~~~~ 641 (1448)
.|++.+|...
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 6666555443
No 254
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.77 E-value=0.31 Score=58.43 Aligned_cols=87 Identities=22% Similarity=0.276 Sum_probs=50.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC-cCHHHHHHHHHHHhCCCCCCC----ChHHHHHHHHH
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-PDLKRIRREIADQLGLNFCEE----SDSERIMMLCN 233 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~l~~ 233 (1448)
...+|.++|.+|+||||+|..++...+.+ .+ .+.-|++... ....+-++.++.+++...... +....+....+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 35799999999999999999999888743 22 3444444321 223445566666666543221 12222333333
Q ss_pred HHHccCcEEEEEcCCC
Q 000518 234 RLKREKKILVILDDIW 249 (1448)
Q Consensus 234 ~l~~~k~~LlVlDdv~ 249 (1448)
.+. +. -+||+|..-
T Consensus 172 ~~~-~~-DvVIIDTAG 185 (437)
T PRK00771 172 KFK-KA-DVIIVDTAG 185 (437)
T ss_pred Hhh-cC-CEEEEECCC
Confidence 333 23 567778763
No 255
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.77 E-value=0.39 Score=58.60 Aligned_cols=198 Identities=20% Similarity=0.180 Sum_probs=117.6
Q ss_pred cccccHHHHHHHHHHHHc----C-CCeEEEEEEcCCCchHHHHHHHHHHHHh---c---cCCcceEEEEEecCCcCHHHH
Q 000518 139 EFIESRESILNDILDALR----G-PYVYMIGVYGMAGIGKTTLVKEVARLAK---E---GRIFDEVVFAEVSQTPDLKRI 207 (1448)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~----~-~~~~vi~I~G~gG~GKTtLa~~~~~~~~---~---~~~f~~~~wv~v~~~~~~~~~ 207 (1448)
..+-+|+.+..+|-..+. + ..-..+.|.|.+|+|||..+..|.+... . -..|+ .+.|+.-.-....++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 445689999888888775 3 3345999999999999999999999654 1 22343 234555555678899
Q ss_pred HHHHHHHhCCCCCCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCcc-----chhhccCCCCCCCCCcEEEEEec-cc
Q 000518 208 RREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTSL-----DLERTGIPFGDVHRGCKILVTSR-RR 277 (1448)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~-----~~~~l~~~l~~~~~gs~ilvTTR-~~ 277 (1448)
...|...+.+... .....++.+..++. +.+..+|++|+++..- .+-.|..+ ...++||++|-+= +-
T Consensus 475 Y~~I~~~lsg~~~--~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdW--pt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 475 YEKIWEALSGERV--TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDW--PTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHhcccCcc--cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcC--CcCCCCceEEEEeccc
Confidence 9999998876532 23334455555554 2366889999875441 11112111 2346787666432 11
Q ss_pred -hhhhhc-------CcccceEEeecCChHHHHHHHHHHhCC--CCCCccHHHHHHHHHHHhCCChHHHHHHHHH
Q 000518 278 -DVLVSE-------MHCQNNYCVSVLNKEEAWSLFSKVVGN--CVEDPDLQTVAIQVANECGGLPIAILTVART 341 (1448)
Q Consensus 278 -~v~~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~~~~~~~~i~~~~~glPlai~~~~~~ 341 (1448)
+..... .-....+...+.+.++-.+....+... .......+-++++|+..-|-.-.|+.+.-++
T Consensus 551 mdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 111110 111335677788888877777666632 2233444445566665555555555444433
No 256
>PRK06696 uridine kinase; Validated
Probab=95.76 E-value=0.014 Score=63.94 Aligned_cols=43 Identities=23% Similarity=0.384 Sum_probs=36.7
Q ss_pred cHHHHHHHHHHHHc---CCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 143 SRESILNDILDALR---GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 143 gR~~~~~~l~~~L~---~~~~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
.|++.+++|.+.+. .....+|+|.|.+|+||||+|+.++....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57778888888774 35678999999999999999999998875
No 257
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.76 E-value=0.054 Score=59.57 Aligned_cols=91 Identities=18% Similarity=0.162 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHcC--CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC
Q 000518 145 ESILNDILDALRG--PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE 222 (1448)
Q Consensus 145 ~~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~ 222 (1448)
...+..+.++..+ .....+.++|.+|+|||+||.++++....+ -..+++++ ..++...+-..... ...
T Consensus 82 ~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~~--~~~ 151 (244)
T PRK07952 82 MNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFSN--SET 151 (244)
T ss_pred HHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHhh--ccc
Confidence 3345555555432 234578999999999999999999988633 23455553 44555554443321 111
Q ss_pred ChHHHHHHHHHHHHccCcEEEEEcCCCCc
Q 000518 223 SDSERIMMLCNRLKREKKILVILDDIWTS 251 (1448)
Q Consensus 223 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 251 (1448)
....+.+.+. +.=+||+||+...
T Consensus 152 ----~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 152 ----SEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ----cHHHHHHHhc--cCCEEEEeCCCCC
Confidence 1123444443 4558888998654
No 258
>PRK09183 transposase/IS protein; Provisional
Probab=95.73 E-value=0.012 Score=65.84 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=22.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
..+.|+|+.|+|||+||..++....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999988754
No 259
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.72 E-value=0.059 Score=59.70 Aligned_cols=89 Identities=22% Similarity=0.368 Sum_probs=56.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCc-ceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHH-----
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIF-DEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSE----- 226 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f-~~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 226 (1448)
..++|+|..|+||||||+++++.... +| +.++++-+.+.. .+.++.+++...-... ..++....
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~--~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAK--AHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 46899999999999999999998873 34 455666676654 4566666665432111 11111111
Q ss_pred -HHHHHHHHHH-c-cCcEEEEEcCCCCc
Q 000518 227 -RIMMLCNRLK-R-EKKILVILDDIWTS 251 (1448)
Q Consensus 227 -~~~~l~~~l~-~-~k~~LlVlDdv~~~ 251 (1448)
..-.+-+++. + ++++|+|+||+...
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 1122334443 3 89999999998654
No 260
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.69 E-value=0.35 Score=56.75 Aligned_cols=43 Identities=21% Similarity=0.444 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHcC---CCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 000518 145 ESILNDILDALRG---PYVYMIGVYGMAGIGKTTLVKEVARLAKEG 187 (1448)
Q Consensus 145 ~~~~~~l~~~L~~---~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~ 187 (1448)
+...+.|.+.+.+ ....+|+|.|.=|+|||++.+.+.+..+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4456667777764 467899999999999999999999988744
No 261
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.29 Score=51.48 Aligned_cols=94 Identities=21% Similarity=0.215 Sum_probs=54.7
Q ss_pred ccccccHHHHHHHHHHHHc-------------CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCH
Q 000518 138 HEFIESRESILNDILDALR-------------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDL 204 (1448)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~ 204 (1448)
...+.|-+-..+++.+... =+..+-|.++|++|+|||.||++|++.-. ..| +.|-.
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~--a~f-----irvvg---- 222 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT--AAF-----IRVVG---- 222 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc--hhe-----eeecc----
Confidence 3345565555555555432 14567789999999999999999998765 224 22211
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc
Q 000518 205 KRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1448)
Q Consensus 205 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 251 (1448)
.+..+.. ++. ....+..+.+-.+++..-.|.+|+++..
T Consensus 223 sefvqky---lge------gprmvrdvfrlakenapsiifideidai 260 (408)
T KOG0727|consen 223 SEFVQKY---LGE------GPRMVRDVFRLAKENAPSIIFIDEIDAI 260 (408)
T ss_pred HHHHHHH---hcc------CcHHHHHHHHHHhccCCcEEEeehhhhH
Confidence 1222222 221 1123444444455567788888988643
No 262
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.63 E-value=0.035 Score=56.30 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=24.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~ 186 (1448)
+-.++.|+|+.|+||||+.+.+|...+.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 3458999999999999999999998864
No 263
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.62 E-value=0.046 Score=62.29 Aligned_cols=84 Identities=20% Similarity=0.310 Sum_probs=54.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCC------CCChHHHHHHHHH
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFC------EESDSERIMMLCN 233 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~ 233 (1448)
-+++-|+|++|+||||||.+++..... .-..++||+....++.. .++.++.+.+ ..+..+....+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~--~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQK--LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 468999999999999999999877652 24568899888777753 3444443311 1122223333333
Q ss_pred HHHccCcEEEEEcCCCC
Q 000518 234 RLKREKKILVILDDIWT 250 (1448)
Q Consensus 234 ~l~~~k~~LlVlDdv~~ 250 (1448)
.+.++.--+||+|-|..
T Consensus 128 li~s~~~~lIVIDSvaa 144 (325)
T cd00983 128 LVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHhccCCCEEEEcchHh
Confidence 33345677999999753
No 264
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.59 E-value=0.056 Score=59.61 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=37.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccC----CcceEEEEEecCCcCHHHHH
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGR----IFDEVVFAEVSQTPDLKRIR 208 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~----~f~~~~wv~v~~~~~~~~~~ 208 (1448)
-.++.|+|++|+|||++|.+++....... .=..++|++....++..++.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 46999999999999999999987764221 01567899988877765554
No 265
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.13 Score=63.96 Aligned_cols=132 Identities=19% Similarity=0.225 Sum_probs=77.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHcc
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1448)
..+.+.++|++|+|||.||+++++..+ .+|-.+.+ . + +. ..+..+ ....+..+.....+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~--~~fi~v~~-----~----~----l~----sk~vGe-sek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESR--SRFISVKG-----S----E----LL----SKWVGE-SEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCC--CeEEEeeC-----H----H----Hh----ccccch-HHHHHHHHHHHHHcC
Confidence 456899999999999999999999665 33433332 1 1 11 011111 223444455555557
Q ss_pred CcEEEEEcCCCCccchh-------------hccCCCCC--CCCCcEEEEEeccchhhhhcC----cccceEEeecCChHH
Q 000518 239 KKILVILDDIWTSLDLE-------------RTGIPFGD--VHRGCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKEE 299 (1448)
Q Consensus 239 k~~LlVlDdv~~~~~~~-------------~l~~~l~~--~~~gs~ilvTTR~~~v~~~~~----~~~~~~~l~~L~~~e 299 (1448)
....|.+|+++....+. .+...+.. ...+..||-||-.....+.++ .-...+.++.-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 89999999986552221 12222221 222333444554444333211 235578888899999
Q ss_pred HHHHHHHHhCC
Q 000518 300 AWSLFSKVVGN 310 (1448)
Q Consensus 300 ~~~Lf~~~~~~ 310 (1448)
..+.|+.+..+
T Consensus 415 r~~i~~~~~~~ 425 (494)
T COG0464 415 RLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHhcc
Confidence 99999999864
No 266
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.00061 Score=72.16 Aligned_cols=105 Identities=29% Similarity=0.377 Sum_probs=70.6
Q ss_pred CCCCCEEeccCCCCCCCcccCCCCCCCEEEcccCCCcccchhhhccCccCEEeccCCCCCCccCc-cccCCCCCCCEEEe
Q 000518 557 LPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPP-NVISSLSQLEELYL 635 (1448)
Q Consensus 557 L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~Ls~~~l~~LP~~i~~L~~L~~L~Ls~~~~l~~lp~-~~l~~L~~L~~L~l 635 (1448)
+.+.+.|+.-||.+.++..+.+++.|++|.||-|+|+.| ..+..+++|+.|+|..|. +..+.. ..+.++++|+.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 445666777777777777777888888888888888777 357778888888887765 555433 12567788888887
Q ss_pred eCCCccccccccccccCCcChhhcCCCCCCCEEE
Q 000518 636 GNTSVEWEFEGLNLERNNASLQELSILSHLTTLE 669 (1448)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 669 (1448)
..|..-+..+ .+.....+.-|++|+.|+
T Consensus 96 ~ENPCc~~ag------~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAG------QNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccc------hhHHHHHHHHcccchhcc
Confidence 7765542211 122335566677777775
No 267
>PRK09354 recA recombinase A; Provisional
Probab=95.53 E-value=0.053 Score=62.34 Aligned_cols=84 Identities=18% Similarity=0.273 Sum_probs=55.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCC------CCChHHHHHHHHH
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFC------EESDSERIMMLCN 233 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~ 233 (1448)
-+++-|+|+.|+||||||.+++..... .=..++||+....++.. .++.++.+.. .....+....+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~--~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 468999999999999999999887753 23568899888877753 3455554311 1122233333333
Q ss_pred HHHccCcEEEEEcCCCC
Q 000518 234 RLKREKKILVILDDIWT 250 (1448)
Q Consensus 234 ~l~~~k~~LlVlDdv~~ 250 (1448)
.+.+++--+||+|-|..
T Consensus 133 li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 133 LVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HhhcCCCCEEEEeChhh
Confidence 33445677999999853
No 268
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.11 Score=65.32 Aligned_cols=160 Identities=14% Similarity=0.132 Sum_probs=91.7
Q ss_pred CccccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcc----eEEEEEecCCcCHHHHHHHHH
Q 000518 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD----EVVFAEVSQTPDLKRIRREIA 212 (1448)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~----~~~wv~v~~~~~~~~~~~~i~ 212 (1448)
...-+.||++++.++++.|....-.--.++|.+|+|||++|--++.+.-..+-.. ..++. -++.
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s------------LD~g 235 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS------------LDLG 235 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE------------ecHH
Confidence 4556789999999999999843333345789999999999999998875332111 11111 0122
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCcc----------chhhccCCCCCCCCCcEEEEEeccchhhh-
Q 000518 213 DQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL----------DLERTGIPFGDVHRGCKILVTSRRRDVLV- 281 (1448)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs~ilvTTR~~~v~~- 281 (1448)
.-..+....-.-.+.+..+.+.+.+.++..|++|.+.... +-..+..|-...+.--.|=.||-++.--.
T Consensus 236 ~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~i 315 (786)
T COG0542 236 SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYI 315 (786)
T ss_pred HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHh
Confidence 2222222233445566677777776679999999985431 11112222111111123444554432100
Q ss_pred -h---cCcccceEEeecCChHHHHHHHHHHh
Q 000518 282 -S---EMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1448)
Q Consensus 282 -~---~~~~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1448)
. .......+.++.-+.+++...++...
T Consensus 316 EKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 316 EKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred hhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 0 12234567788888888888876544
No 269
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.48 E-value=0.077 Score=55.89 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=68.6
Q ss_pred CCccccccHHHHHHHHHH----HHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHH
Q 000518 136 EGHEFIESRESILNDILD----ALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~----~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 211 (1448)
.+...++|-+...+.+++ .+.+....-|.+||--|+|||.|++++.+....+ .-. -|.|.+.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glr--LVEV~k~---------- 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLR--LVEVDKE---------- 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCe--EEEEcHH----------
Confidence 344556665555555554 3445566679999999999999999999988633 211 2333221
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHH-ccCcEEEEEcCCCCc---cchhhccCCCCC---CCCCcEEEEEeccc
Q 000518 212 ADQLGLNFCEESDSERIMMLCNRLK-REKKILVILDDIWTS---LDLERTGIPFGD---VHRGCKILVTSRRR 277 (1448)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~---~~~~~l~~~l~~---~~~gs~ilvTTR~~ 277 (1448)
+....-.+.+.++ ...||.|..||..-+ +..+.+...+.. +.+...++..|.|+
T Consensus 123 ------------dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 ------------DLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ------------HHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 1111122333333 268999999998655 345555555543 23344555555554
No 270
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.48 E-value=0.025 Score=68.52 Aligned_cols=75 Identities=20% Similarity=0.305 Sum_probs=54.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHcc
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1448)
+-++..++|++|.||||||+-++++.- | .++=|++|+..+...+-..|...+....... ..+
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------ads 386 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------ADS 386 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccccc-------------cCC
Confidence 457999999999999999999998764 3 3667888888888777777766554321110 014
Q ss_pred CcEEEEEcCCCCc
Q 000518 239 KKILVILDDIWTS 251 (1448)
Q Consensus 239 k~~LlVlDdv~~~ 251 (1448)
++.=||+|+++-.
T Consensus 387 rP~CLViDEIDGa 399 (877)
T KOG1969|consen 387 RPVCLVIDEIDGA 399 (877)
T ss_pred CcceEEEecccCC
Confidence 6777888888654
No 271
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.48 E-value=0.069 Score=55.30 Aligned_cols=40 Identities=30% Similarity=0.421 Sum_probs=31.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcC
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 203 (1448)
++.|+|++|+||||+|..++..... .-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 4789999999999999999988753 335677877766544
No 272
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.47 E-value=0.066 Score=65.52 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=40.7
Q ss_pred cccHHHHHHHHHHHHcC-----CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEE
Q 000518 141 IESRESILNDILDALRG-----PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAE 197 (1448)
Q Consensus 141 ~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~ 197 (1448)
+.--.+.++++.+||.+ ...+++.+.||+|+||||.++.+++... |+.+-|.+
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~n 78 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWIN 78 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecC
Confidence 33334567788888762 3457999999999999999999998875 67777864
No 273
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.47 E-value=0.049 Score=60.03 Aligned_cols=46 Identities=22% Similarity=0.331 Sum_probs=36.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHH
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIR 208 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 208 (1448)
-.++.|+|.+|+|||++|.+++..... .-..++|++.. .++.+.+.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~--~~~~v~yi~~e-~~~~~r~~ 68 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAK--NGKKVIYIDTE-GLSPERFK 68 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEECC-CCCHHHHH
Confidence 469999999999999999999987753 24678899887 56655543
No 274
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.42 E-value=0.0077 Score=64.35 Aligned_cols=84 Identities=29% Similarity=0.350 Sum_probs=47.3
Q ss_pred hcCCCCceEEEecCC--cCc-ccCccCCCCCCCCEEeccCCCCCCC---cccCCCCCCCEEEcccCCCcccch----hhh
Q 000518 531 FAGMPKLRVLVLTRM--KLL-TLPSSFCHLPNLESLCLDQCILGDI---AIIGNLKNLEILSLCCSDIEQLPR----EIG 600 (1448)
Q Consensus 531 f~~l~~Lr~L~L~~~--~i~-~lp~~i~~L~~Lr~L~L~~~~i~~l---~~i~~L~~L~~L~Ls~~~l~~LP~----~i~ 600 (1448)
|..+++|+.|.++.| ++. .++.....+++|++|+|++|.|+.+ ..+.++.+|..|++..|..+.+-. -+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 344555555555555 332 3333344446666666666665544 345566667777777665554421 245
Q ss_pred ccCccCEEeccCCC
Q 000518 601 ELTQLKLLDLSNCS 614 (1448)
Q Consensus 601 ~L~~L~~L~Ls~~~ 614 (1448)
-+++|.+||-....
T Consensus 141 ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 141 LLPSLKYLDGCDVD 154 (260)
T ss_pred HhhhhccccccccC
Confidence 56788888755443
No 275
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.41 E-value=0.051 Score=62.30 Aligned_cols=58 Identities=26% Similarity=0.343 Sum_probs=43.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc----CCcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEG----RIFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~----~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 218 (1448)
-.++-|+|++|+|||+++.+++-..... ..=..++||+....++.+++. ++++.++.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d 157 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVD 157 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 4689999999999999999988654321 112478999999999988876 456666554
No 276
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.37 E-value=0.08 Score=59.19 Aligned_cols=123 Identities=20% Similarity=0.147 Sum_probs=69.1
Q ss_pred HHHHHHHc-CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEE---ecCCcCHHHHHHHHHHHhCC-------
Q 000518 149 NDILDALR-GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAE---VSQTPDLKRIRREIADQLGL------- 217 (1448)
Q Consensus 149 ~~l~~~L~-~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~---v~~~~~~~~~~~~i~~~l~~------- 217 (1448)
+.++..+. +.+..-++|+|+.|+|||||.+.++..... ....+++. +....... +++.....
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~---~~G~i~~~g~~v~~~d~~~----ei~~~~~~~~q~~~~ 171 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILST---GISQLGLRGKKVGIVDERS----EIAGCVNGVPQHDVG 171 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCC---CCceEEECCEEeecchhHH----HHHHHhccccccccc
Confidence 33443433 345678999999999999999999977642 23334431 11111122 33222211
Q ss_pred -CCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCccchhhccCCCCCCCCCcEEEEEeccchhhh
Q 000518 218 -NFCEESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLV 281 (1448)
Q Consensus 218 -~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~ 281 (1448)
..+..+.......+..-+....+-++|+|++...+.+..+...+. .|..||+||.+..+..
T Consensus 172 ~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 172 IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 000001111122333334335788999999987766665544442 5778999999766643
No 277
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.36 E-value=0.089 Score=58.01 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=26.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 000518 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1448)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~~~~~~~~ 186 (1448)
.+..+|+|.|+.|+|||||++.+....+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 56789999999999999999999988764
No 278
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.34 E-value=0.062 Score=59.79 Aligned_cols=76 Identities=21% Similarity=0.189 Sum_probs=49.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHcc
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1448)
...-+.++|++|+|||.||.++.++.- +..+ .+.+++ ..+++.++....... . ...++.+.+ .
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~~----~---~~~~l~~~l--~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDEG----R---LEEKLLREL--K 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhcC----c---hHHHHHHHh--h
Confidence 566799999999999999999999987 3333 344443 455666665554321 1 112233333 2
Q ss_pred CcEEEEEcCCCCc
Q 000518 239 KKILVILDDIWTS 251 (1448)
Q Consensus 239 k~~LlVlDdv~~~ 251 (1448)
+-=||||||+...
T Consensus 167 ~~dlLIiDDlG~~ 179 (254)
T COG1484 167 KVDLLIIDDIGYE 179 (254)
T ss_pred cCCEEEEecccCc
Confidence 5568999998654
No 279
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.34 E-value=0.066 Score=59.73 Aligned_cols=55 Identities=25% Similarity=0.391 Sum_probs=41.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccC----CcceEEEEEecCCcCHHHHHHHHHHHhC
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGR----IFDEVVFAEVSQTPDLKRIRREIADQLG 216 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 216 (1448)
.+.=|+|.+|+|||+||.+++-...... .=..++||+-...|+.+++. +|++..+
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 4899999999999999999987654221 12468999999999988875 4666554
No 280
>PRK04296 thymidine kinase; Provisional
Probab=95.30 E-value=0.026 Score=60.06 Aligned_cols=110 Identities=17% Similarity=0.140 Sum_probs=60.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC---CChHHHHHHHHHHHHc
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE---ESDSERIMMLCNRLKR 237 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~ 237 (1448)
.++.|.|+.|.||||+|..++.+.... -..++.+. ..++.+.....++.+++..... ....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 478899999999999999999887633 22333331 2222222233455555543222 112222222222 22
Q ss_pred cCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEeccch
Q 000518 238 EKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRRD 278 (1448)
Q Consensus 238 ~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~~~ 278 (1448)
++.-+||+|.+... ++...+...+ ...|..||+|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 35568999998643 2232222221 235788999998754
No 281
>PRK06921 hypothetical protein; Provisional
Probab=95.27 E-value=0.06 Score=60.41 Aligned_cols=71 Identities=21% Similarity=0.272 Sum_probs=44.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHcc
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1448)
....+.++|..|+|||.||.++++....+. -..+++++. .+++..+...+ +......+.+ .
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~~--~ 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF------VEGFGDLKDDF----------DLLEAKLNRM--K 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH------HHHHHHHHHHH----------HHHHHHHHHh--c
Confidence 456799999999999999999999876321 244566654 23333332221 1112223333 2
Q ss_pred CcEEEEEcCC
Q 000518 239 KKILVILDDI 248 (1448)
Q Consensus 239 k~~LlVlDdv 248 (1448)
+-=||||||+
T Consensus 177 ~~dlLiIDDl 186 (266)
T PRK06921 177 KVEVLFIDDL 186 (266)
T ss_pred CCCEEEEecc
Confidence 5569999999
No 282
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.25 E-value=0.07 Score=58.07 Aligned_cols=119 Identities=20% Similarity=0.290 Sum_probs=65.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc----CC-------c---ceEEEEE----ecCCc--CHH---------------
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEG----RI-------F---DEVVFAE----VSQTP--DLK--------------- 205 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~----~~-------f---~~~~wv~----v~~~~--~~~--------------- 205 (1448)
.+++|+|+.|+|||||.+.+..-.+.. .. + ..+.||. +...+ ++.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 689999999999999999999743210 00 1 1334431 11111 111
Q ss_pred -------HHHHHHHHHhCCCC------CCCChHHHHHHHHHHHHccCcEEEEEcCCCCc------cchhhccCCCCCCCC
Q 000518 206 -------RIRREIADQLGLNF------CEESDSERIMMLCNRLKREKKILVILDDIWTS------LDLERTGIPFGDVHR 266 (1448)
Q Consensus 206 -------~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~------~~~~~l~~~l~~~~~ 266 (1448)
+...+.++.++... .+-+-.+..+.+..+..-.+.=|+|||+--.- ...-.+...+.. .
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--e 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--E 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--C
Confidence 33444455544321 11223333444444444478889999984332 222233333332 3
Q ss_pred CcEEEEEeccchhhh
Q 000518 267 GCKILVTSRRRDVLV 281 (1448)
Q Consensus 267 gs~ilvTTR~~~v~~ 281 (1448)
|.-||+.|.+-....
T Consensus 189 g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 GKTVLMVTHDLGLVM 203 (254)
T ss_pred CCEEEEEeCCcHHhH
Confidence 888999999887665
No 283
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.24 E-value=0.13 Score=49.20 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=33.4
Q ss_pred ccccHHHHHHHHHHHHc----C---CCeEEEEEEcCCCchHHHHHHHHHHHH
Q 000518 140 FIESRESILNDILDALR----G---PYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1448)
Q Consensus 140 ~~~gR~~~~~~l~~~L~----~---~~~~vi~I~G~gG~GKTtLa~~~~~~~ 184 (1448)
.++|..-..+.+++.+. + .+.-|++++|+.|+|||.+|+.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 35566555555555554 2 345699999999999999999999884
No 284
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.23 E-value=0.071 Score=61.58 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=43.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhcc----CCcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEG----RIFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~----~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 218 (1448)
-.++-|+|.+|+|||+|+.+++-..... ..-..++||+....|+.+++.+ +++.++.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 4688899999999999999997554321 1124789999999999888764 56666554
No 285
>PTZ00494 tuzin-like protein; Provisional
Probab=95.23 E-value=1 Score=52.12 Aligned_cols=164 Identities=13% Similarity=0.171 Sum_probs=99.8
Q ss_pred CCccccccHHHHHHHHHHHHcC---CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHH
Q 000518 136 EGHEFIESRESILNDILDALRG---PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIA 212 (1448)
Q Consensus 136 ~~~~~~~gR~~~~~~l~~~L~~---~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 212 (1448)
.....++.|+++-..+.+.|.. ...+++.+.|.-|.||++|.+.......+ ..++|+|....| -++.|.
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~ED---tLrsVV 439 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTED---TLRSVV 439 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCcc---hHHHHH
Confidence 3456688898887777777763 45789999999999999999998877653 467788877644 456777
Q ss_pred HHhCCCCCCC--ChHHHHHHHHHHH---HccCcEEEEEc--CCCCccc-hhhccCCCCCCCCCcEEEEEeccchhhhh--
Q 000518 213 DQLGLNFCEE--SDSERIMMLCNRL---KREKKILVILD--DIWTSLD-LERTGIPFGDVHRGCKILVTSRRRDVLVS-- 282 (1448)
Q Consensus 213 ~~l~~~~~~~--~~~~~~~~l~~~l---~~~k~~LlVlD--dv~~~~~-~~~l~~~l~~~~~gs~ilvTTR~~~v~~~-- 282 (1448)
+.++.+..+. +..+.+.+-.... ..++.-+||+- +-.+... +.+ ...+.....-|.|++----+.+...
T Consensus 440 KALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE-~vaLacDrRlCHvv~EVplESLT~~n~ 518 (664)
T PTZ00494 440 RALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGE-VVSLVSDCQACHIVLAVPMKALTPLNV 518 (664)
T ss_pred HHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHH-HHHHHccchhheeeeechHhhhchhhc
Confidence 8888765442 2222222222222 23566666653 2222111 111 0122223445677764433332221
Q ss_pred cCcccceEEeecCChHHHHHHHHHHh
Q 000518 283 EMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1448)
Q Consensus 283 ~~~~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1448)
....-..|.+++++.++|.++-++..
T Consensus 519 ~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 519 SSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred cCccceeEecCCcCHHHHHHHHhccc
Confidence 23344578899999999999887765
No 286
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.22 E-value=0.043 Score=57.77 Aligned_cols=36 Identities=33% Similarity=0.517 Sum_probs=29.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEE
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFA 196 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv 196 (1448)
...+|.+.|+.|+||||+|+.+++... ..+..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~--~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK--LKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEE
Confidence 345899999999999999999999886 335555555
No 287
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.20 E-value=0.048 Score=62.91 Aligned_cols=100 Identities=19% Similarity=0.222 Sum_probs=54.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCc
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1448)
.-+.++|+.|+|||.||.++++....+. ..++++++. ++...+...-. + ... +. ....+.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~~------~l~~~l~~~~~-~--~~~--~~-~~~~~~l~--~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTAD------ELIEILREIRF-N--NDK--EL-EEVYDLLI--NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEHH------HHHHHHHHHHh-c--cch--hH-HHHHHHhc--cC
Confidence 7799999999999999999999886332 356666543 33333332110 1 000 11 11133332 34
Q ss_pred EEEEEcCCCCc--cchh--hccCCCCC-CCCCcEEEEEecc
Q 000518 241 ILVILDDIWTS--LDLE--RTGIPFGD-VHRGCKILVTSRR 276 (1448)
Q Consensus 241 ~LlVlDdv~~~--~~~~--~l~~~l~~-~~~gs~ilvTTR~ 276 (1448)
=||||||+... ..|. .+...+.. ...+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 58999999554 2332 22222211 1234458888863
No 288
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.24 Score=55.86 Aligned_cols=28 Identities=32% Similarity=0.216 Sum_probs=25.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 158 PYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
...+-|.++|++|+|||-||++|+....
T Consensus 243 rPWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 243 RPWKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred cccceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 3567899999999999999999999876
No 289
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.17 E-value=0.11 Score=66.39 Aligned_cols=149 Identities=19% Similarity=0.276 Sum_probs=80.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCc
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1448)
+-|.++|++|+|||++|+.+++.... .| +.++.. ++.. +. .+ . ....+..+........+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~--~f-----~~is~~----~~~~-~~--~g-----~-~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKV--PF-----FTISGS----DFVE-MF--VG-----V-GASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCC--CE-----EEEehH----HhHH-hh--hc-----c-cHHHHHHHHHHHHhcCC
Confidence 34999999999999999999887652 22 222211 1111 00 00 0 11233333444444577
Q ss_pred EEEEEcCCCCcc------------c----hhhccCCCCC--CCCCcEEEEEeccchhhhhcC----cccceEEeecCChH
Q 000518 241 ILVILDDIWTSL------------D----LERTGIPFGD--VHRGCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKE 298 (1448)
Q Consensus 241 ~LlVlDdv~~~~------------~----~~~l~~~l~~--~~~gs~ilvTTR~~~v~~~~~----~~~~~~~l~~L~~~ 298 (1448)
.+|++|+++... . ...+...+.. ...+.-||.||......+.+. ...+.+.++.-+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 899999986541 0 1111111111 223455555777665444311 23457788888888
Q ss_pred HHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCC
Q 000518 299 EAWSLFSKVVGNCVEDPDLQTVAIQVANECGGL 331 (1448)
Q Consensus 299 e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 331 (1448)
+-.++++.+.......++.. ...+++.+.|.
T Consensus 326 ~R~~Il~~~~~~~~l~~~~d--~~~la~~t~G~ 356 (644)
T PRK10733 326 GREQILKVHMRRVPLAPDID--AAIIARGTPGF 356 (644)
T ss_pred HHHHHHHHHhhcCCCCCcCC--HHHHHhhCCCC
Confidence 88889888875432211111 23455665553
No 290
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.11 E-value=0.025 Score=67.94 Aligned_cols=48 Identities=21% Similarity=0.292 Sum_probs=41.9
Q ss_pred ccccccHHHHHHHHHHHHc------CCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 138 HEFIESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
+..++|.++.+++|++.|. +.+.+++.++||+|+||||||+.+++-.+
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 3358899999999999883 45668999999999999999999999775
No 291
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.06 E-value=0.15 Score=59.92 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=53.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccC--CcceEEEEEecCC-cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHH
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGR--IFDEVVFAEVSQT-PDLKRIRREIADQLGLNFCEESDSERIMMLCNRL 235 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~--~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l 235 (1448)
..++|.++|+.|+||||.+..++....... .-..+..+++... ....+-++..++.++...........+......+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 357999999999999999999998765321 1234555555432 1223335566666666543333333333333333
Q ss_pred HccCcEEEEEcCCCC
Q 000518 236 KREKKILVILDDIWT 250 (1448)
Q Consensus 236 ~~~k~~LlVlDdv~~ 250 (1448)
.+.-+||+|....
T Consensus 253 --~~~DlVLIDTaGr 265 (388)
T PRK12723 253 --KDFDLVLVDTIGK 265 (388)
T ss_pred --CCCCEEEEcCCCC
Confidence 3456888898754
No 292
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.94 E-value=0.089 Score=61.64 Aligned_cols=85 Identities=20% Similarity=0.190 Sum_probs=46.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHcc
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1448)
..++.++|++|+||||+|..++........+ .+..++... .....+.++..++.++..... ......+...+.+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~---~~~~~~l~~~l~~~ 298 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYP---VKDIKKFKETLARD 298 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeee---hHHHHHHHHHHHhC
Confidence 4689999999999999999999765322222 233333322 112333444445555543321 12233444444433
Q ss_pred CcEEEEEcCC
Q 000518 239 KKILVILDDI 248 (1448)
Q Consensus 239 k~~LlVlDdv 248 (1448)
..-+||+|-.
T Consensus 299 ~~D~VLIDTa 308 (432)
T PRK12724 299 GSELILIDTA 308 (432)
T ss_pred CCCEEEEeCC
Confidence 3345888843
No 293
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.12 Score=54.65 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=37.9
Q ss_pred ccccccHHHHHHHHHHHHc----C---------CCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 138 HEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
...+.|-++.++++.+... . +..+-|.++|++|.|||-.|++|+|+-.
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd 236 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD 236 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC
Confidence 4556788888888887654 1 3456788999999999999999998765
No 294
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.89 E-value=0.16 Score=56.35 Aligned_cols=49 Identities=12% Similarity=0.237 Sum_probs=35.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHH
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 211 (1448)
.-.++.|.|++|+|||++|.++....- +.-..++|++... +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeC--CHHHHHHHH
Confidence 447999999999999999999877653 2245688888765 445555543
No 295
>PRK14974 cell division protein FtsY; Provisional
Probab=94.88 E-value=0.2 Score=57.90 Aligned_cols=90 Identities=23% Similarity=0.208 Sum_probs=50.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc--CHHHHHHHHHHHhCCCCCC----CChHHHHHHHH
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP--DLKRIRREIADQLGLNFCE----ESDSERIMMLC 232 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~ 232 (1448)
+..+|.++|+.|+||||++..++...+.. .+ .++.+.. ..+ ...+-++..+..++..... .+....+....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 35799999999999999999999877633 23 3333432 222 2233345566666654321 11122222222
Q ss_pred HHHHccCcEEEEEcCCCCc
Q 000518 233 NRLKREKKILVILDDIWTS 251 (1448)
Q Consensus 233 ~~l~~~k~~LlVlDdv~~~ 251 (1448)
+.......-+|++|.....
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 2222222238889987543
No 296
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.88 E-value=0.54 Score=53.51 Aligned_cols=166 Identities=8% Similarity=0.001 Sum_probs=94.7
Q ss_pred HHHHHHHcCCC-eEEEEEEcCCCchHHHHHHHHHHHH--------hccCCcceEEEEEe-cCCcCHHHHHHHHHHHhCCC
Q 000518 149 NDILDALRGPY-VYMIGVYGMAGIGKTTLVKEVARLA--------KEGRIFDEVVFAEV-SQTPDLKRIRREIADQLGLN 218 (1448)
Q Consensus 149 ~~l~~~L~~~~-~~vi~I~G~gG~GKTtLa~~~~~~~--------~~~~~f~~~~wv~v-~~~~~~~~~~~~i~~~l~~~ 218 (1448)
+.+...+...+ .++..++|..|.||+++|..+.+.. ....+-+.+.+++. .....+.++. ++.+.+...
T Consensus 6 ~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~ 84 (299)
T PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFS 84 (299)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccC
Confidence 34444554443 4677799999999999999999886 21222223444432 2223333333 333333211
Q ss_pred CCCCChHHHHHHHHHHHHccCcEEEEEcCCCCcc--chhhccCCCCCCCCCcEEEEEec-cchhhhhcCcccceEEeecC
Q 000518 219 FCEESDSERIMMLCNRLKREKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTSR-RRDVLVSEMHCQNNYCVSVL 295 (1448)
Q Consensus 219 ~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ilvTTR-~~~v~~~~~~~~~~~~l~~L 295 (1448)
. ...+++-++|+|++.... ..+.+...+.....++.+|++|. ...+..........+++.++
T Consensus 85 ~---------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l 149 (299)
T PRK07132 85 S---------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEP 149 (299)
T ss_pred C---------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCC
Confidence 1 012577888999986652 35555555555556676666554 33333312334568899999
Q ss_pred ChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000518 296 NKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1448)
Q Consensus 296 ~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 337 (1448)
++++..+.+... + . + ++.++.++...+|.=-|+..
T Consensus 150 ~~~~l~~~l~~~-~--~-~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 150 DQQKILAKLLSK-N--K-E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CHHHHHHHHHHc-C--C-C---hhHHHHHHHHcCCHHHHHHH
Confidence 999988777653 2 1 1 23356666666763344444
No 297
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.83 E-value=0.15 Score=56.78 Aligned_cols=89 Identities=21% Similarity=0.320 Sum_probs=56.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH-hCCCC-CCCChHHHHHHHHHHHH
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ-LGLNF-CEESDSERIMMLCNRLK 236 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~-l~~~~-~~~~~~~~~~~l~~~l~ 236 (1448)
.-+++=|+|+.|+||||+|.+++-... ..-..++||+....++++.+.. ++.. +..-. ......+....+...+.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq--~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQ--KPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhh--cCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 346899999999999999999998776 3344889999999999887654 3333 22111 11122223333333332
Q ss_pred c---cCcEEEEEcCCCC
Q 000518 237 R---EKKILVILDDIWT 250 (1448)
Q Consensus 237 ~---~k~~LlVlDdv~~ 250 (1448)
+ .+--|+|+|-|-.
T Consensus 136 ~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 136 RSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HhccCCCCEEEEecCcc
Confidence 2 1356888888743
No 298
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.80 E-value=0.14 Score=57.67 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 158 PYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
....+|+|.|+.|+||||+|+.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4557999999999999999998876654
No 299
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.77 E-value=0.15 Score=61.19 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=48.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHcc
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1448)
-+++.++|++|+||||++..++........-..+..|+..... ...+-++...+.++..................+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC--
Confidence 3589999999999999999998876511222355666654321 1223334444545544322222222222333332
Q ss_pred CcEEEEEcCCC
Q 000518 239 KKILVILDDIW 249 (1448)
Q Consensus 239 k~~LlVlDdv~ 249 (1448)
..=+||+|...
T Consensus 299 ~~DlVlIDt~G 309 (424)
T PRK05703 299 DCDVILIDTAG 309 (424)
T ss_pred CCCEEEEeCCC
Confidence 45678889653
No 300
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.32 Score=51.11 Aligned_cols=147 Identities=16% Similarity=0.208 Sum_probs=81.6
Q ss_pred ccHHHHHHHHHHHHc----C---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHH
Q 000518 142 ESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIR 208 (1448)
Q Consensus 142 ~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 208 (1448)
.|-++.+.+|.+.+. . ...+-+.++|++|.|||-||++|++... .-|+.||...- ++
T Consensus 150 GgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~-------c~firvsgsel---vq 219 (404)
T KOG0728|consen 150 GGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGSEL---VQ 219 (404)
T ss_pred ccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc-------eEEEEechHHH---HH
Confidence 355666666666554 1 2456788999999999999999987543 34566665322 22
Q ss_pred HHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCcc-------------chhhc---cCCCC--CCCCCcEE
Q 000518 209 REIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL-------------DLERT---GIPFG--DVHRGCKI 270 (1448)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~~~~l---~~~l~--~~~~gs~i 270 (1448)
+-|.+. ...++++.--.+..-+-.|.+|++++.- ....+ .-.+. ...+.-||
T Consensus 220 k~igeg----------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikv 289 (404)
T KOG0728|consen 220 KYIGEG----------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKV 289 (404)
T ss_pred HHhhhh----------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEE
Confidence 222110 1122222222223466777778775530 00111 11111 13456788
Q ss_pred EEEeccchhhhhc----CcccceEEeecCChHHHHHHHHHHh
Q 000518 271 LVTSRRRDVLVSE----MHCQNNYCVSVLNKEEAWSLFSKVV 308 (1448)
Q Consensus 271 lvTTR~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~ 308 (1448)
|..|..-++.+.+ -..++.++.++-+++.-.++++-+.
T Consensus 290 imatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 290 IMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 8877766665541 1234567888877777777776554
No 301
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.73 E-value=0.13 Score=59.80 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=42.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccC----CcceEEEEEecCCcCHHHHHHHHHHHhCC
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGR----IFDEVVFAEVSQTPDLKRIRREIADQLGL 217 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 217 (1448)
-.++-|+|++|+||||+|.+++....... .=..++||+....++.+++. ++++.++.
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 46899999999999999999987764211 11378999999988887765 44455443
No 302
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.71 E-value=0.13 Score=56.04 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=22.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
+|+|.|..|+||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998875
No 303
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.71 E-value=0.16 Score=58.47 Aligned_cols=90 Identities=14% Similarity=0.162 Sum_probs=56.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHc
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1448)
+.++++|+|+.|+||||++..++.....+. ..+.+|+..... ...+-++..++.++.......+...+....+.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 457999999999999999999998775332 346667664332 23445556666666543323333344444444432
Q ss_pred -cCcEEEEEcCCCC
Q 000518 238 -EKKILVILDDIWT 250 (1448)
Q Consensus 238 -~k~~LlVlDdv~~ 250 (1448)
+..=+|++|-...
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 3446778887754
No 304
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.70 E-value=0.25 Score=57.17 Aligned_cols=90 Identities=16% Similarity=0.145 Sum_probs=54.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC-cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHc
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-PDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1448)
+-++|++|||.|+||||-...++.+..-...=..+..|+...- ....+=++..++-++..................+.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~- 280 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALR- 280 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhh-
Confidence 3689999999999999877777766542222345666665432 24455556667777776554444444444444443
Q ss_pred cCcEEEEEcCCCC
Q 000518 238 EKKILVILDDIWT 250 (1448)
Q Consensus 238 ~k~~LlVlDdv~~ 250 (1448)
+. =+|.+|-+..
T Consensus 281 ~~-d~ILVDTaGr 292 (407)
T COG1419 281 DC-DVILVDTAGR 292 (407)
T ss_pred cC-CEEEEeCCCC
Confidence 23 4555566543
No 305
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.66 E-value=0.084 Score=56.75 Aligned_cols=87 Identities=26% Similarity=0.476 Sum_probs=54.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC-cCHHHHHHHHHHHhCC-------CCCCCChHHH-----
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-PDLKRIRREIADQLGL-------NFCEESDSER----- 227 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~-------~~~~~~~~~~----- 227 (1448)
..++|+|.+|+|||+|+.++.+... -+.++++-+.+. ..+.++.+++...-.. ...++.....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 4689999999999999999999874 345577888766 4566666666443111 1111221111
Q ss_pred -HHHHHHHHH-ccCcEEEEEcCCCCc
Q 000518 228 -IMMLCNRLK-REKKILVILDDIWTS 251 (1448)
Q Consensus 228 -~~~l~~~l~-~~k~~LlVlDdv~~~ 251 (1448)
.-.+-+++. +++++|+|+||+...
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLTRW 117 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHHHH
T ss_pred cchhhhHHHhhcCCceeehhhhhHHH
Confidence 111223333 489999999998443
No 306
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.65 E-value=0.31 Score=58.19 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=23.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
..++.++|++|+||||.|..++....
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57999999999999999999998864
No 307
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.64 E-value=0.079 Score=56.21 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
||.|+|++|+||||+|+.++....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999988663
No 308
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.64 E-value=0.15 Score=55.96 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=33.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHH
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 211 (1448)
-.++.|.|..|+||||+|.+++.....+. ..+++++ ...+..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~--~e~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVS--TQLTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEe--CCCCHHHHHHHH
Confidence 35999999999999999977776653222 3455665 333556666665
No 309
>PRK10867 signal recognition particle protein; Provisional
Probab=94.64 E-value=0.25 Score=58.98 Aligned_cols=28 Identities=32% Similarity=0.413 Sum_probs=24.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~ 186 (1448)
...+|.++|++|+||||.|..++...+.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3579999999999999999999887763
No 310
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.64 E-value=0.35 Score=53.73 Aligned_cols=166 Identities=18% Similarity=0.150 Sum_probs=91.3
Q ss_pred ccccHHHHHHHHHHHHc----CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCc-ceEEEEEecCCcCH-HHHHHHHHH
Q 000518 140 FIESRESILNDILDALR----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF-DEVVFAEVSQTPDL-KRIRREIAD 213 (1448)
Q Consensus 140 ~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f-~~~~wv~v~~~~~~-~~~~~~i~~ 213 (1448)
.++|-.++..++-.++. ..+..-+.|+||.|.|||+|......+.+ .| +..+-|......-. +-.++.|.+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q---~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ---ENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH---hcCCeEEEEEECccchhhHHHHHHHHH
Confidence 35666666666666665 34556789999999999999998888732 23 33334444443322 224455555
Q ss_pred HhCCC----CC-CCChHHHHHHHHHHHHcc-----CcEEEEEcCCCCccc-------hhhccCCCCCCCCCcEEEEEecc
Q 000518 214 QLGLN----FC-EESDSERIMMLCNRLKRE-----KKILVILDDIWTSLD-------LERTGIPFGDVHRGCKILVTSRR 276 (1448)
Q Consensus 214 ~l~~~----~~-~~~~~~~~~~l~~~l~~~-----k~~LlVlDdv~~~~~-------~~~l~~~l~~~~~gs~ilvTTR~ 276 (1448)
++..+ .. ..+..+....+...++.+ -++.+|+|+.+--.. +.-+...-....+-|-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 55322 11 123345566677777642 457888887653210 11111111123456778889985
Q ss_pred chhhhh--c---Ccccc-eEEeecCChHHHHHHHHHHh
Q 000518 277 RDVLVS--E---MHCQN-NYCVSVLNKEEAWSLFSKVV 308 (1448)
Q Consensus 277 ~~v~~~--~---~~~~~-~~~l~~L~~~e~~~Lf~~~~ 308 (1448)
...-.. . .-... ++-++.+.-+|...++++..
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 533211 0 11122 33445577777777777765
No 311
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.61 E-value=0.13 Score=59.65 Aligned_cols=58 Identities=26% Similarity=0.342 Sum_probs=43.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCC----cceEEEEEecCCcCHHHHHHHHHHHhCC
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRI----FDEVVFAEVSQTPDLKRIRREIADQLGL 217 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 217 (1448)
.-.++-|+|++|+|||++|.+++........ =..++||+....++..++.+ +++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 3468999999999999999999977542211 14789999999888877654 4455543
No 312
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.60 E-value=0.12 Score=59.60 Aligned_cols=58 Identities=21% Similarity=0.235 Sum_probs=41.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccC----CcceEEEEEecCCcCHHHHHHHHHHHhCC
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGR----IFDEVVFAEVSQTPDLKRIRREIADQLGL 217 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 217 (1448)
.-.++.|+|.+|+||||+|..++....... .-..++|++....++..++ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 357999999999999999999986433111 1235799998888888764 445555544
No 313
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.55 E-value=0.048 Score=53.83 Aligned_cols=30 Identities=37% Similarity=0.523 Sum_probs=25.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcc
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFD 191 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~ 191 (1448)
.-|.|.||+|+||||+++.+.+..+.+. |.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g-~k 35 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG-YK 35 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC-ce
Confidence 4689999999999999999999988543 43
No 314
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.53 E-value=0.06 Score=57.77 Aligned_cols=111 Identities=11% Similarity=0.132 Sum_probs=57.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHH-HHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccC
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLK-RIRREIADQLGLNFCEESDSERIMMLCNRLKREK 239 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 239 (1448)
.+|.|+|+.|+||||++..+...... .....+++ +....... .-...+..+-... .......+.+...+. ..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~--~~~~~i~t-~e~~~E~~~~~~~~~i~q~~vg---~~~~~~~~~i~~aLr-~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK--NKTHHILT-IEDPIEFVHESKRSLINQREVG---LDTLSFENALKAALR-QD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh--cCCcEEEE-EcCCccccccCccceeeecccC---CCccCHHHHHHHHhc-CC
Confidence 47899999999999999998876642 22333332 22211100 0000111110000 111122333444444 34
Q ss_pred cEEEEEcCCCCccchhhccCCCCCCCCCcEEEEEeccchhhh
Q 000518 240 KILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLV 281 (1448)
Q Consensus 240 ~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~ 281 (1448)
.=.+++|++.+.+.+...... ...|-.++.|+....+..
T Consensus 75 pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcHHH
Confidence 568999999877654432222 124556777877665543
No 315
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.53 E-value=0.11 Score=60.13 Aligned_cols=59 Identities=22% Similarity=0.278 Sum_probs=43.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccC----CcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGR----IFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 218 (1448)
.-.++-|+|.+|+|||++|..++-...... .-..++||+....|+.+++. +|++.++.+
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 346889999999999999998886543211 11268999999999988864 556666543
No 316
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.50 E-value=2.1 Score=49.88 Aligned_cols=59 Identities=25% Similarity=0.372 Sum_probs=38.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEec-CCcCHHHHHHHHHHHhCCCC
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS-QTPDLKRIRREIADQLGLNF 219 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~l~~~~ 219 (1448)
...||-.+|.-|+||||.|..+++..+. +.+. +.-|.+. ..+...+=++.++.+.+...
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~k-vllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKK-VLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH-cCCc-eEEEecccCChHHHHHHHHHHHHcCCce
Confidence 3579999999999999999999999884 2222 2222221 22233445566667766553
No 317
>PRK06547 hypothetical protein; Provisional
Probab=94.48 E-value=0.052 Score=56.43 Aligned_cols=36 Identities=31% Similarity=0.275 Sum_probs=28.9
Q ss_pred HHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 150 DILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 150 ~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
.+...+......+|+|.|+.|+||||+|+.+.+...
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 334445566788999999999999999999998753
No 318
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.47 E-value=0.14 Score=53.82 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAKE 186 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~~ 186 (1448)
++.++|++|+||||+++.++.....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999988763
No 319
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.44 E-value=0.14 Score=56.03 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=33.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcC
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 203 (1448)
.-.++.|.|.+|+||||+|.+++..... .-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~--~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAG--QGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEECCCCCH
Confidence 3478999999999999999999987752 234677887665554
No 320
>PTZ00035 Rad51 protein; Provisional
Probab=94.43 E-value=0.17 Score=58.75 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=41.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhcc----CCcceEEEEEecCCcCHHHHHHHHHHHhCC
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEG----RIFDEVVFAEVSQTPDLKRIRREIADQLGL 217 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~----~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 217 (1448)
.-.++.|+|..|+|||||+..++-..... ..-..++||+-...++.+++ .++++.++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 34689999999999999999998655411 11235679998888887774 445665554
No 321
>PRK07667 uridine kinase; Provisional
Probab=94.37 E-value=0.06 Score=57.51 Aligned_cols=37 Identities=24% Similarity=0.550 Sum_probs=29.4
Q ss_pred HHHHHHHc--CCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 149 NDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 149 ~~l~~~L~--~~~~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
+.|.+.+. .....+|+|.|.+|+||||+|+.+.....
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44555554 34457999999999999999999999876
No 322
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.34 E-value=0.26 Score=55.52 Aligned_cols=90 Identities=20% Similarity=0.184 Sum_probs=49.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCH--HHHHHHHHHHhCCCCC----CCChHHHHHHH
Q 000518 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDL--KRIRREIADQLGLNFC----EESDSERIMML 231 (1448)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~--~~~~~~i~~~l~~~~~----~~~~~~~~~~l 231 (1448)
.+.+++.++|++|+||||++..++...+.. -..+.+++... +.. .+-++..++..+.... ..+........
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 345899999999999999999999877632 23455665543 222 2333344555543321 11122222222
Q ss_pred HHHHHccCcEEEEEcCCCC
Q 000518 232 CNRLKREKKILVILDDIWT 250 (1448)
Q Consensus 232 ~~~l~~~k~~LlVlDdv~~ 250 (1448)
.........=++|+|-.-.
T Consensus 147 l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHCCCCEEEEeCCCC
Confidence 2222223445778887643
No 323
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.28 E-value=0.051 Score=58.92 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARL 183 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~ 183 (1448)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999999854
No 324
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.25 E-value=0.27 Score=62.22 Aligned_cols=88 Identities=19% Similarity=0.214 Sum_probs=54.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHcc
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1448)
-+|++++|+.|+||||++..++......+....+..++... .....+-++...+.++.......+...+....+.+. +
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-D 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-C
Confidence 46999999999999999999998774222223455555432 222455566667777765433333344444444443 3
Q ss_pred CcEEEEEcCCC
Q 000518 239 KKILVILDDIW 249 (1448)
Q Consensus 239 k~~LlVlDdv~ 249 (1448)
+ =+|++|-..
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 3 477888775
No 325
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.25 E-value=0.09 Score=52.84 Aligned_cols=42 Identities=29% Similarity=0.343 Sum_probs=32.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHH
Q 000518 163 IGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1448)
Q Consensus 163 i~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 209 (1448)
|.++|+.|+|||+||+.+++... ....-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEecccccccccee
Confidence 67999999999999999999873 2234467888888877654
No 326
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.19 E-value=0.13 Score=60.54 Aligned_cols=86 Identities=27% Similarity=0.293 Sum_probs=52.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHHc
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE--SDSERIMMLCNRLKR 237 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 237 (1448)
-.++.|.|.+|+|||||+.+++...... -..++|++..+. ..++. .-++.++...... ......+.+.+.+.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4699999999999999999999877532 246777766543 33332 2234555432210 011123445555555
Q ss_pred cCcEEEEEcCCCC
Q 000518 238 EKKILVILDDIWT 250 (1448)
Q Consensus 238 ~k~~LlVlDdv~~ 250 (1448)
.+.-+||+|.+..
T Consensus 157 ~~~~lVVIDSIq~ 169 (372)
T cd01121 157 LKPDLVIIDSIQT 169 (372)
T ss_pred cCCcEEEEcchHH
Confidence 5677889998843
No 327
>PRK04328 hypothetical protein; Provisional
Probab=94.18 E-value=0.21 Score=55.75 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=31.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT 201 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~ 201 (1448)
.-.++.|.|.+|+|||+||.++....- +.-..++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~--~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEEeeCC
Confidence 346899999999999999999887653 22356788887664
No 328
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.17 E-value=0.32 Score=66.21 Aligned_cols=26 Identities=35% Similarity=0.299 Sum_probs=23.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
.+=|.++|++|+|||.||++++.+..
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcC
Confidence 45788999999999999999999875
No 329
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.16 E-value=0.19 Score=60.65 Aligned_cols=88 Identities=19% Similarity=0.203 Sum_probs=48.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHcc
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1448)
-.|++++|+.|+||||++..++.....+..-..+..|+... .....+-++...+.++..................+ .
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L--~ 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSEL--R 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhc--c
Confidence 36999999999999999999998775332222445555432 22334445555666555432211111111112222 2
Q ss_pred CcEEEEEcCCC
Q 000518 239 KKILVILDDIW 249 (1448)
Q Consensus 239 k~~LlVlDdv~ 249 (1448)
....+++|...
T Consensus 334 d~d~VLIDTaG 344 (484)
T PRK06995 334 NKHIVLIDTIG 344 (484)
T ss_pred CCCeEEeCCCC
Confidence 33467778764
No 330
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.13 E-value=0.072 Score=63.47 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=40.0
Q ss_pred ccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcc
Q 000518 140 FIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD 191 (1448)
Q Consensus 140 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~ 191 (1448)
.++||++.++.+...+..+ .-|.|.|++|+|||++|+.+.......+.|.
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 5789999999998887644 3489999999999999999998764333443
No 331
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.11 E-value=0.26 Score=58.55 Aligned_cols=88 Identities=20% Similarity=0.224 Sum_probs=49.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHcc
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1448)
-.+++++|+.|+||||++..++.........+.+.++.... .....+-+....+.++..................+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~-- 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR-- 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc--
Confidence 46999999999999999999988653222234444444332 122333344555666554433222222333333332
Q ss_pred CcEEEEEcCCC
Q 000518 239 KKILVILDDIW 249 (1448)
Q Consensus 239 k~~LlVlDdv~ 249 (1448)
..-++++|...
T Consensus 269 ~~d~VLIDTaG 279 (420)
T PRK14721 269 GKHMVLIDTVG 279 (420)
T ss_pred CCCEEEecCCC
Confidence 34456677653
No 332
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.10 E-value=0.24 Score=53.08 Aligned_cols=42 Identities=29% Similarity=0.432 Sum_probs=30.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCc--------ceEEEEEecCCc
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIF--------DEVVFAEVSQTP 202 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f--------~~~~wv~v~~~~ 202 (1448)
.++.|.|++|+||||++.+++........| ..++|++.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 489999999999999999999887643333 367788776653
No 333
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.10 E-value=0.17 Score=50.10 Aligned_cols=45 Identities=31% Similarity=0.485 Sum_probs=34.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCC
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNF 219 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~ 219 (1448)
+|.|-|++|+||||+|+.+++..--+ .| +.-.++++|++..+.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCCH
Confidence 68999999999999999999987521 11 23467888888887653
No 334
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.07 E-value=0.032 Score=57.10 Aligned_cols=26 Identities=38% Similarity=0.534 Sum_probs=23.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKE 186 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~ 186 (1448)
+.|.+.|.+|+||||+|++++...+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHH
Confidence 46889999999999999999998874
No 335
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.07 E-value=0.2 Score=52.96 Aligned_cols=116 Identities=22% Similarity=0.322 Sum_probs=60.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEE---ecCCcCHHHHHHH------HHHHhCCCCC------CCCh
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAE---VSQTPDLKRIRRE------IADQLGLNFC------EESD 224 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~---v~~~~~~~~~~~~------i~~~l~~~~~------~~~~ 224 (1448)
-.+++|+|+.|+|||||++.++.... .....+++. +. ..+..+.... +++.++.... .-+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 35899999999999999999987543 234444442 22 1122222211 3444443211 1111
Q ss_pred HHH-HHHHHHHHHccCcEEEEEcCCCCcc---chhhccCCCCCC-CC-CcEEEEEeccchhh
Q 000518 225 SER-IMMLCNRLKREKKILVILDDIWTSL---DLERTGIPFGDV-HR-GCKILVTSRRRDVL 280 (1448)
Q Consensus 225 ~~~-~~~l~~~l~~~k~~LlVlDdv~~~~---~~~~l~~~l~~~-~~-gs~ilvTTR~~~v~ 280 (1448)
.+. .-.+.+.+. ..+-++++|+.-..- ..+.+...+... .. |..||++|.+....
T Consensus 101 G~~qrl~laral~-~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALA-QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 111 112334444 577889999975432 122222222111 12 66788888877654
No 336
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.07 E-value=0.0034 Score=66.73 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=28.2
Q ss_pred CccEEEcCCCCCCCCCCchhhcCCCCceEEEecCCcCcccCccCCCCCCCCEEeccCCCCCCC
Q 000518 511 HLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI 573 (1448)
Q Consensus 511 ~L~~L~l~~n~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l 573 (1448)
+.+-|++.++.+. .| ++..+|+.|.||.|+-|.|+.+. .+..|++|+.|.|..|.|.++
T Consensus 20 ~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sl 78 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESL 78 (388)
T ss_pred HhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccH
Confidence 4444555554431 11 22345555555555555555442 244555555555555544433
No 337
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.04 E-value=0.8 Score=51.46 Aligned_cols=130 Identities=12% Similarity=0.001 Sum_probs=72.0
Q ss_pred HHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhcc------------CCcceEEEEEecCCcCHHHHHHHHHH
Q 000518 147 ILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEG------------RIFDEVVFAEVSQTPDLKRIRREIAD 213 (1448)
Q Consensus 147 ~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~------------~~f~~~~wv~v~~~~~~~~~~~~i~~ 213 (1448)
..+++...+..+++ ....++|+.|+||+++|..++...--. .|.|..+........
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~----------- 73 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGR----------- 73 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCC-----------
Confidence 45667777665554 577899999999999999999876311 122322111111100
Q ss_pred HhCCCCCCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEecc-chhhhhcCcc
Q 000518 214 QLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRR-RDVLVSEMHC 286 (1448)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~-~~v~~~~~~~ 286 (1448)
.-..+.++.+.+.+. .+++-++|+|+++.. +.++.+...+-....++.+|++|.+ ..+.......
T Consensus 74 --------~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SR 145 (290)
T PRK05917 74 --------LHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSR 145 (290)
T ss_pred --------cCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhc
Confidence 001223333333332 256678899998765 4666666666544556665555555 4443321223
Q ss_pred cceEEeecC
Q 000518 287 QNNYCVSVL 295 (1448)
Q Consensus 287 ~~~~~l~~L 295 (1448)
...+.+.++
T Consensus 146 cq~~~~~~~ 154 (290)
T PRK05917 146 SLSIHIPME 154 (290)
T ss_pred ceEEEccch
Confidence 445666654
No 338
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.01 E-value=0.31 Score=53.94 Aligned_cols=91 Identities=23% Similarity=0.291 Sum_probs=58.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc--cCCcceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHH----
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKE--GRIFDEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSE---- 226 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~--~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 226 (1448)
..++|.|-.|+|||+|+..+.++... +..-+.++++-+.+.. ++.++..++...-... ..++....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 46899999999999999999877541 2234678888887664 5677777665542211 11111111
Q ss_pred --HHHHHHHHHHc--cCcEEEEEcCCCCc
Q 000518 227 --RIMMLCNRLKR--EKKILVILDDIWTS 251 (1448)
Q Consensus 227 --~~~~l~~~l~~--~k~~LlVlDdv~~~ 251 (1448)
..-.+-++++. ++++|+|+||+...
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 11223455543 69999999998654
No 339
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.00 E-value=0.048 Score=58.37 Aligned_cols=25 Identities=44% Similarity=0.745 Sum_probs=23.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAKE 186 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~~ 186 (1448)
||+|.|++|+||||+|+.+......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 7999999999999999999999873
No 340
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.00 E-value=0.29 Score=55.68 Aligned_cols=85 Identities=19% Similarity=0.279 Sum_probs=51.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC------CChHHHHHHHHH
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE------ESDSERIMMLCN 233 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 233 (1448)
-+++-|+|+.|+||||||.++....... -..++||+....++... ++.++.+.+. +...+..+....
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHHH
Confidence 3589999999999999999999887533 45688999988877643 3444543221 222333333333
Q ss_pred HHHccCcEEEEEcCCCCc
Q 000518 234 RLKREKKILVILDDIWTS 251 (1448)
Q Consensus 234 ~l~~~k~~LlVlDdv~~~ 251 (1448)
-++.+.--++|+|-|...
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 334455568999998655
No 341
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.98 E-value=0.044 Score=54.18 Aligned_cols=22 Identities=50% Similarity=0.783 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 000518 163 IGVYGMAGIGKTTLVKEVARLA 184 (1448)
Q Consensus 163 i~I~G~gG~GKTtLa~~~~~~~ 184 (1448)
|+|.|+.|+||||+|+++....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999885
No 342
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.98 E-value=0.095 Score=55.27 Aligned_cols=43 Identities=21% Similarity=0.369 Sum_probs=31.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHH
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLK 205 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~ 205 (1448)
.|+|.|-||+||||+|..++.+...++.|+ +.=|+...+++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCChH
Confidence 689999999999999999777776554443 4446666666544
No 343
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.94 E-value=0.18 Score=53.07 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
.+++|.|+.|+|||||++.++....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 5899999999999999999987643
No 344
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.93 E-value=0.047 Score=47.01 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~ 184 (1448)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 345
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.34 Score=59.39 Aligned_cols=173 Identities=18% Similarity=0.222 Sum_probs=89.3
Q ss_pred ccccccHHH---HHHHHHHHHcCCC---------eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHH
Q 000518 138 HEFIESRES---ILNDILDALRGPY---------VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLK 205 (1448)
Q Consensus 138 ~~~~~gR~~---~~~~l~~~L~~~~---------~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~ 205 (1448)
+..+.|.++ ++.++++.|++.. .+=|.++|++|+|||.||++++....+- | .++|...-++
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~FVe 221 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSDFVE 221 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchhhhh
Confidence 444556554 4556666676432 3568999999999999999999988643 2 2222211111
Q ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCcc------------ch----hhccCCCCC--CCCC
Q 000518 206 RIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL------------DL----ERTGIPFGD--VHRG 267 (1448)
Q Consensus 206 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~~----~~l~~~l~~--~~~g 267 (1448)
+.- + -....++.+....++.-++.|++|.++... .+ ..+..-... .+.|
T Consensus 222 -----mfV--G------vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~g 288 (596)
T COG0465 222 -----MFV--G------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEG 288 (596)
T ss_pred -----hhc--C------CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCc
Confidence 100 0 112445556666666677999999875431 11 112111111 2234
Q ss_pred cEEEEEeccchhhhhc----CcccceEEeecCChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCCh
Q 000518 268 CKILVTSRRRDVLVSE----MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP 332 (1448)
Q Consensus 268 s~ilvTTR~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 332 (1448)
-.|+..|-..+|.+.+ -.-++.+.++.-+-..-.+.++-++.+..-.++. + ...|++.+-|.-
T Consensus 289 viviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~V-d-l~~iAr~tpGfs 355 (596)
T COG0465 289 VIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDV-D-LKKIARGTPGFS 355 (596)
T ss_pred eEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcC-C-HHHHhhhCCCcc
Confidence 4444445555555431 1223445555555455556666665433222111 1 123666666654
No 346
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.68 Score=56.42 Aligned_cols=148 Identities=18% Similarity=0.209 Sum_probs=82.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCc
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1448)
.=|.++|++|+|||-||.+++.....+ +|+|-.. +++.+. +|. .++.++.+..+.+.-++
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP----ElL~Ky---IGa------SEq~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP----ELLSKY---IGA------SEQNVRDLFERAQSAKP 761 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH----HHHHHH---hcc------cHHHHHHHHHHhhccCC
Confidence 358899999999999999999876522 4666543 222222 221 34567777777777899
Q ss_pred EEEEEcCCCCcc-------------chhhccCCCC--CCCCCcEEEE-EeccchhhhhcC--cc-cceEEeecCChHHHH
Q 000518 241 ILVILDDIWTSL-------------DLERTGIPFG--DVHRGCKILV-TSRRRDVLVSEM--HC-QNNYCVSVLNKEEAW 301 (1448)
Q Consensus 241 ~LlVlDdv~~~~-------------~~~~l~~~l~--~~~~gs~ilv-TTR~~~v~~~~~--~~-~~~~~l~~L~~~e~~ 301 (1448)
+.+.||+.++.. ..+.+...+. .+-.|.-|+. |||..-+-.... |. ++.+.-+.-++.|-.
T Consensus 762 CiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl 841 (952)
T KOG0735|consen 762 CILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERL 841 (952)
T ss_pred eEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHH
Confidence 999999987651 1233332232 1334666665 455443322211 21 122222334566677
Q ss_pred HHHHHHhCC--CCCCccHHHHHHHHHHHhCCCh
Q 000518 302 SLFSKVVGN--CVEDPDLQTVAIQVANECGGLP 332 (1448)
Q Consensus 302 ~Lf~~~~~~--~~~~~~~~~~~~~i~~~~~glP 332 (1448)
++|+..+.. .....+ .+.++.+..|.-
T Consensus 842 ~il~~ls~s~~~~~~vd----l~~~a~~T~g~t 870 (952)
T KOG0735|consen 842 EILQVLSNSLLKDTDVD----LECLAQKTDGFT 870 (952)
T ss_pred HHHHHHhhccCCccccc----hHHHhhhcCCCc
Confidence 777766642 112222 334555555544
No 347
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.80 E-value=0.025 Score=36.08 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=13.2
Q ss_pred CCCEEEcccCCCcccchhhhc
Q 000518 581 NLEILSLCCSDIEQLPREIGE 601 (1448)
Q Consensus 581 ~L~~L~Ls~~~l~~LP~~i~~ 601 (1448)
+|++||+++|.++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 456666666666666665544
No 348
>PRK05439 pantothenate kinase; Provisional
Probab=93.80 E-value=0.39 Score=54.62 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=24.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 158 PYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
....+|+|.|.+|+||||+|+.+.....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999988664
No 349
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.77 E-value=0.1 Score=54.44 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
.|.|.|++|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999854
No 350
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.72 E-value=0.2 Score=53.39 Aligned_cols=45 Identities=13% Similarity=0.139 Sum_probs=31.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHH
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 210 (1448)
++.|.|++|+|||++|.+++...-.. =..++|++... +.+++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHH
Confidence 36799999999999999998776422 24577887654 34444443
No 351
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.70 E-value=0.13 Score=50.89 Aligned_cols=101 Identities=19% Similarity=0.325 Sum_probs=34.4
Q ss_pred hhcCCCCceEEEecCCcCcccC-ccCCCCCCCCEEeccCCCCCCC--cccCCCCCCCEEEcccCCCcccchh-hhccCcc
Q 000518 530 FFAGMPKLRVLVLTRMKLLTLP-SSFCHLPNLESLCLDQCILGDI--AIIGNLKNLEILSLCCSDIEQLPRE-IGELTQL 605 (1448)
Q Consensus 530 ~f~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~l--~~i~~L~~L~~L~Ls~~~l~~LP~~-i~~L~~L 605 (1448)
.|.++.+|+.+.+.. .+..++ ..|..+.+|+.+.+.++ +..+ ..+.++.+|+.+.+.. .+..++.. +..+.+|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344444444444442 233332 22444444444444432 3332 2344444455555433 33333322 3345555
Q ss_pred CEEeccCCCCCCccCccccCCCCCCCEEEee
Q 000518 606 KLLDLSNCSKLKVIPPNVISSLSQLEELYLG 636 (1448)
Q Consensus 606 ~~L~Ls~~~~l~~lp~~~l~~L~~L~~L~l~ 636 (1448)
+.+++..+ +..++...+.+. +|+.+.+.
T Consensus 84 ~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 55555331 344444444444 55555443
No 352
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.66 E-value=0.53 Score=52.70 Aligned_cols=97 Identities=14% Similarity=0.162 Sum_probs=54.5
Q ss_pred HHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC-----
Q 000518 148 LNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE----- 222 (1448)
Q Consensus 148 ~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~----- 222 (1448)
.++..+++.+.++.+|.|.|..|+|||||+..+.+..... . .++.+. .+..+..+. +.++..+......
T Consensus 92 a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~--~-~~~VI~-gD~~t~~Da--~rI~~~g~pvvqi~tG~~ 165 (290)
T PRK10463 92 AERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS--V-PCAVIE-GDQQTVNDA--ARIRATGTPAIQVNTGKG 165 (290)
T ss_pred HHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC--C-CEEEEC-CCcCcHHHH--HHHHhcCCcEEEecCCCC
Confidence 3344455556789999999999999999999999987532 2 222221 111222221 2233333221110
Q ss_pred --ChHHHHHHHHHHHHccCcEEEEEcCCCC
Q 000518 223 --SDSERIMMLCNRLKREKKILVILDDIWT 250 (1448)
Q Consensus 223 --~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 250 (1448)
.....+......+.....-++|+++|.+
T Consensus 166 Chl~a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 166 CHLDAQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred CcCcHHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 1233344445555444456778899865
No 353
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.65 E-value=0.053 Score=56.45 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=24.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
..+|+|-||-|+||||||+.++++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999886
No 354
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.60 E-value=0.31 Score=58.40 Aligned_cols=90 Identities=22% Similarity=0.343 Sum_probs=58.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHH------
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSE------ 226 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------ 226 (1448)
..++|+|.+|+|||||+.++++..... +-+.++++-+.+.. .+.++..++...-... ..+++...
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 568999999999999999999887633 56778887776554 5666766665432211 11122111
Q ss_pred HHHHHHHHHH-c-cCcEEEEEcCCCCc
Q 000518 227 RIMMLCNRLK-R-EKKILVILDDIWTS 251 (1448)
Q Consensus 227 ~~~~l~~~l~-~-~k~~LlVlDdv~~~ 251 (1448)
.+-.+-++++ + ++++|+++|++-..
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccchHH
Confidence 1223344554 2 79999999999554
No 355
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.59 E-value=0.084 Score=68.24 Aligned_cols=185 Identities=17% Similarity=0.156 Sum_probs=91.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHH-hccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCC----CCChHHHHHHHH
Q 000518 158 PYVYMIGVYGMAGIGKTTLVKEVARLA-KEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFC----EESDSERIMMLC 232 (1448)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~~~~~~-~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~ 232 (1448)
.+.+++.|.|+.|.||||+.+.+.... ..... .+|.+.....+ .++..+...++.... ..+-......+.
T Consensus 320 ~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G----~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~ 394 (771)
T TIGR01069 320 FEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG----IPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNIS 394 (771)
T ss_pred CCceEEEEECCCCCCchHHHHHHHHHHHHHHhC----CCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHH
Confidence 345799999999999999999998762 11110 11111110000 001111111110000 000011111222
Q ss_pred HHHHc-cCcEEEEEcCCCCccc---hhhc----cCCCCCCCCCcEEEEEeccchhhhhcCcccc--eEEeecCChHHHHH
Q 000518 233 NRLKR-EKKILVILDDIWTSLD---LERT----GIPFGDVHRGCKILVTSRRRDVLVSEMHCQN--NYCVSVLNKEEAWS 302 (1448)
Q Consensus 233 ~~l~~-~k~~LlVlDdv~~~~~---~~~l----~~~l~~~~~gs~ilvTTR~~~v~~~~~~~~~--~~~l~~L~~~e~~~ 302 (1448)
.-+.. .++-|+++|+...-.+ ...+ ...+. ..|+.+|+||....+......... ...+. ++.+ ...
T Consensus 395 ~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~l~ 470 (771)
T TIGR01069 395 AILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-TLS 470 (771)
T ss_pred HHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-CCc
Confidence 22221 4789999999865422 2222 12221 357899999999887542111111 11221 1111 111
Q ss_pred HHHHHh--CCCCCCccHHHHHHHHHHHhCCChHHHHHHHHHhcCCChHHHHHHHHHHh
Q 000518 303 LFSKVV--GNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELR 358 (1448)
Q Consensus 303 Lf~~~~--~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~l~~l~ 358 (1448)
|..+. |... ...|-.|++++ |+|-.|.--|..+-.....+++.++..+.
T Consensus 471 -p~Ykl~~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 471 -PTYKLLKGIPG-----ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred -eEEEECCCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11111 2111 22466788777 79999888888887666666777777776
No 356
>PRK06851 hypothetical protein; Provisional
Probab=93.56 E-value=0.48 Score=55.10 Aligned_cols=43 Identities=30% Similarity=0.329 Sum_probs=33.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC
Q 000518 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT 201 (1448)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~ 201 (1448)
+--+++.|.|++|+||||+++.++..... +.++..++-|-..+
T Consensus 212 ~~~~~~~i~G~pG~GKstl~~~i~~~a~~-~G~~v~~~hC~~dP 254 (367)
T PRK06851 212 GVKNRYFLKGRPGTGKSTMLKKIAKAAEE-RGFDVEVYHCGFDP 254 (367)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHHHHh-CCCeEEEEeCCCCC
Confidence 34578999999999999999999999864 45666665554443
No 357
>PTZ00301 uridine kinase; Provisional
Probab=93.53 E-value=0.067 Score=57.52 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
..+|+|.|.+|+||||+|+.+.....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 47899999999999999999988764
No 358
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.53 E-value=3.2 Score=47.80 Aligned_cols=46 Identities=26% Similarity=0.169 Sum_probs=32.8
Q ss_pred eEEeecCChHHHHHHHHHHhCCC--CCCccHHHHHHHHHHHhCCChHH
Q 000518 289 NYCVSVLNKEEAWSLFSKVVGNC--VEDPDLQTVAIQVANECGGLPIA 334 (1448)
Q Consensus 289 ~~~l~~L~~~e~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~~~glPla 334 (1448)
.+++++++.+|+..++..+.... ......+...+++.-..+|.|.-
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHH
Confidence 78999999999999999888322 11123345566677777999854
No 359
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.52 E-value=0.063 Score=54.26 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 688999999999999999987653
No 360
>PRK08233 hypothetical protein; Provisional
Probab=93.49 E-value=0.062 Score=56.95 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
..+|+|.|++|+||||+|+.++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998764
No 361
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.49 E-value=0.2 Score=49.48 Aligned_cols=115 Identities=19% Similarity=0.333 Sum_probs=63.7
Q ss_pred CCCCccEEEcCCCCCCCCCCchhhcCCCCceEEEecCCcCcccCc-cCCCCCCCCEEeccCCCCCCC--cccCCCCCCCE
Q 000518 508 EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPS-SFCHLPNLESLCLDQCILGDI--AIIGNLKNLEI 584 (1448)
Q Consensus 508 ~~~~L~~L~l~~n~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~l--~~i~~L~~L~~ 584 (1448)
.+++|+.+.+.. . ...++...|.++..|+.+.+.++ +..++. .|.++..|+.+.+.. .+..+ ..+..+.+|+.
T Consensus 10 ~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECC-C-eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 577888888874 2 35677888899989999999875 666653 477887899999976 44333 56777889999
Q ss_pred EEcccCCCcccchh-hhccCccCEEeccCCCCCCccCccccCCCCCC
Q 000518 585 LSLCCSDIEQLPRE-IGELTQLKLLDLSNCSKLKVIPPNVISSLSQL 630 (1448)
Q Consensus 585 L~Ls~~~l~~LP~~-i~~L~~L~~L~Ls~~~~l~~lp~~~l~~L~~L 630 (1448)
+++..+ +..++.. +.+. +|+.+.+.. .+..++...+.+.++|
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 998764 6666544 6665 888888765 3567777666666655
No 362
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.45 E-value=0.18 Score=52.71 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
-.+++|+|+.|+|||||.+.++.-..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35899999999999999999997653
No 363
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.43 E-value=0.41 Score=53.05 Aligned_cols=86 Identities=15% Similarity=0.259 Sum_probs=52.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC-----------------
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE----------------- 221 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~----------------- 221 (1448)
.-.++.|+|.+|+|||++|.++....-. .=..++|++..+. ..++.+.+ .+++.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK--QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh--CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 3468999999999999999999766432 2346788888654 44555543 233322110
Q ss_pred ----CChHHHHHHHHHHHHccCcEEEEEcCCC
Q 000518 222 ----ESDSERIMMLCNRLKREKKILVILDDIW 249 (1448)
Q Consensus 222 ----~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 249 (1448)
.........+.+.+.+.+.-++|+|.+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 1112334444444544466688999875
No 364
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.43 E-value=0.19 Score=51.38 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLA 184 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~ 184 (1448)
-.++.|.||.|+|||||++++..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999999876
No 365
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=93.42 E-value=0.075 Score=56.24 Aligned_cols=28 Identities=39% Similarity=0.532 Sum_probs=25.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~ 186 (1448)
++.+|+|.|.+|+||||+|+.++..+..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4679999999999999999999998873
No 366
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.36 E-value=0.14 Score=55.45 Aligned_cols=57 Identities=25% Similarity=0.276 Sum_probs=36.4
Q ss_pred HHHHHHHHHc--CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcC
Q 000518 147 ILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1448)
Q Consensus 147 ~~~~l~~~L~--~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 203 (1448)
...++++.+. ..+..+|+|.|++|+|||||+-++....+.+.+=-.++=|+=|..++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCC
Confidence 3445555544 34678999999999999999999999988554333444444444443
No 367
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.35 E-value=0.1 Score=52.60 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=27.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEE
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFA 196 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv 196 (1448)
.||.|.|..|+||||||+++........ ..+.++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g--~~~~~L 36 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARG--IKVYLL 36 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT--S-EEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEe
Confidence 5899999999999999999999987443 344444
No 368
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.35 E-value=0.38 Score=48.91 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
+|.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999998875
No 369
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.33 E-value=0.074 Score=57.78 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=24.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHH
Q 000518 158 PYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1448)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~~~~~~ 184 (1448)
.+..+|+|.|++|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999999876
No 370
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.31 E-value=0.18 Score=56.50 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=21.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhc
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKE 186 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~ 186 (1448)
+.|.|.|.+|+||||+|+++......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46899999999999999999998774
No 371
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.28 E-value=0.13 Score=51.36 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=28.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ 200 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~ 200 (1448)
++|.|+|+.|+|||||++.+.+.... +.+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~-~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKR-RGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhH-cCCceEEEEEccC
Confidence 58999999999999999999999873 4455555555444
No 372
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.26 E-value=0.047 Score=34.84 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=15.5
Q ss_pred CceEEEecCCcCcccCccCCCC
Q 000518 536 KLRVLVLTRMKLLTLPSSFCHL 557 (1448)
Q Consensus 536 ~Lr~L~L~~~~i~~lp~~i~~L 557 (1448)
+|++|+|++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4778888888777777766543
No 373
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.26 E-value=0.19 Score=52.47 Aligned_cols=23 Identities=39% Similarity=0.497 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVAR 182 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~ 182 (1448)
-.+++|+|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 35899999999999999999864
No 374
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.25 E-value=0.34 Score=50.30 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
-.+++|+|+.|+|||||++.++....
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999997653
No 375
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.24 E-value=0.071 Score=56.84 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLA 184 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~ 184 (1448)
++++|.|+|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999765
No 376
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.24 E-value=0.21 Score=59.08 Aligned_cols=88 Identities=19% Similarity=0.313 Sum_probs=53.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHHH----
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSER---- 227 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 227 (1448)
-..++|+|..|+|||||++.++.... .+.++.+-+.+.. .+.++.++++..-+.. ..+++....
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 35799999999999999999986432 3556666666554 4566666654432211 111111111
Q ss_pred --HHHHHHHHH-ccCcEEEEEcCCCCc
Q 000518 228 --IMMLCNRLK-REKKILVILDDIWTS 251 (1448)
Q Consensus 228 --~~~l~~~l~-~~k~~LlVlDdv~~~ 251 (1448)
.-.+-+++. +++++|+++||+-..
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 112334443 489999999998654
No 377
>PRK06762 hypothetical protein; Provisional
Probab=93.18 E-value=0.079 Score=55.14 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLA 184 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~ 184 (1448)
.++|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 378
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.15 E-value=0.085 Score=57.15 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
...+|+|+|+.|+||||||+.++....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999998764
No 379
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.15 E-value=0.082 Score=50.22 Aligned_cols=23 Identities=52% Similarity=0.729 Sum_probs=20.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHh
Q 000518 163 IGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 163 i~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
|.|+|++|+|||++|+.++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 56999999999999999998875
No 380
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=1.3 Score=47.15 Aligned_cols=189 Identities=13% Similarity=0.133 Sum_probs=97.0
Q ss_pred cCCCccccccHHHHHHHHHHHHc----C---------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC
Q 000518 134 YNEGHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ 200 (1448)
Q Consensus 134 ~~~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~ 200 (1448)
|......+.|-++.++++++.+. . ...+-+..+|++|.|||-+|++.+.+-. ..|=..+
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~--aTFLKLA------ 237 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN--ATFLKLA------ 237 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc--chHHHhc------
Confidence 34456678899999999998864 1 2345688999999999999999987654 2231100
Q ss_pred CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc-------------cchhh---ccCCCCC-
Q 000518 201 TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS-------------LDLER---TGIPFGD- 263 (1448)
Q Consensus 201 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~-------------~~~~~---l~~~l~~- 263 (1448)
.+ .+.+..+ . +....++....-.+...+..|.+|+++-. +.... +.-.+..
T Consensus 238 --gP-QLVQMfI--------G-dGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGF 305 (424)
T KOG0652|consen 238 --GP-QLVQMFI--------G-DGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF 305 (424)
T ss_pred --ch-HHHhhhh--------c-chHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCC
Confidence 00 0110000 0 11122233333333357788888886432 00011 1111111
Q ss_pred -CCCCcEEEEEeccchhhhhc-C--c-ccceEEeecCChHHHHHHHHHHhC--CCCCCccHHHHHHHHHHHhCCChHHHH
Q 000518 264 -VHRGCKILVTSRRRDVLVSE-M--H-CQNNYCVSVLNKEEAWSLFSKVVG--NCVEDPDLQTVAIQVANECGGLPIAIL 336 (1448)
Q Consensus 264 -~~~gs~ilvTTR~~~v~~~~-~--~-~~~~~~l~~L~~~e~~~Lf~~~~~--~~~~~~~~~~~~~~i~~~~~glPlai~ 336 (1448)
.....|||..|...++...+ + + -.+.|+.+--+++.-..+++-+.. +..++-.++++++.--..-|.---|+-
T Consensus 306 ss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVc 385 (424)
T KOG0652|consen 306 SSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVC 385 (424)
T ss_pred CCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeee
Confidence 23456888877766655431 1 1 234566554455544555555553 333445566665543332222234444
Q ss_pred HHHHHh
Q 000518 337 TVARTL 342 (1448)
Q Consensus 337 ~~~~~l 342 (1448)
+=|+++
T Consensus 386 VEAGMi 391 (424)
T KOG0652|consen 386 VEAGMI 391 (424)
T ss_pred hhhhHH
Confidence 555554
No 381
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.12 E-value=0.64 Score=52.60 Aligned_cols=52 Identities=27% Similarity=0.265 Sum_probs=37.3
Q ss_pred ccccccHHHHHHHHHHHHc----C----------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcc
Q 000518 138 HEFIESRESILNDILDALR----G----------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD 191 (1448)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~----~----------~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~ 191 (1448)
...+.|-+..++.+-+... . ...+-|.++||+|.|||-+|++++.+.. ..|-
T Consensus 91 f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag--a~fI 156 (386)
T KOG0737|consen 91 FDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG--ANFI 156 (386)
T ss_pred hhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC--CCcc
Confidence 3445666776666665532 1 2356789999999999999999999876 4453
No 382
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.12 E-value=0.38 Score=61.54 Aligned_cols=103 Identities=19% Similarity=0.214 Sum_probs=64.7
Q ss_pred cccccHHHHHHHHHHHHcC------C--CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHH
Q 000518 139 EFIESRESILNDILDALRG------P--YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1448)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~~------~--~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 210 (1448)
..++|.++.+..|.+.+.. + ....+.+.|+.|+|||-||++++.-.- +..+..+-+++++-..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F--gse~~~IriDmse~~e------- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF--GSEENFIRLDMSEFQE------- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc--CCccceEEechhhhhh-------
Confidence 3456777777777777652 2 456889999999999999999998773 3344555555444222
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHHccCcEEEEEcCCCCc
Q 000518 211 IADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1448)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 251 (1448)
+.+.++.. +.--..+....+-+.+++..-.+|+||||+..
T Consensus 633 vskligsp-~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 VSKLIGSP-PGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hhhccCCC-cccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 22222321 11111223346667776656678888999876
No 383
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.11 E-value=0.28 Score=49.53 Aligned_cols=26 Identities=38% Similarity=0.457 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
-.+++|+|+.|.|||||++.++....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 35899999999999999999987653
No 384
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.09 E-value=0.25 Score=54.07 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=35.8
Q ss_pred ccccHHHHHHHHHHHHc----C---CCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 140 FIESRESILNDILDALR----G---PYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 140 ~~~gR~~~~~~l~~~L~----~---~~~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
.++|..-..+.++..++ + .+.-+++++|..|+||.-.|+.+++...
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~ 135 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLY 135 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHH
Confidence 45676666677777665 1 3456999999999999999999998765
No 385
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=93.01 E-value=0.033 Score=55.92 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
.-|.|.|..|+||+++|+.++....
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 4578999999999999999987654
No 386
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.01 E-value=0.46 Score=56.59 Aligned_cols=90 Identities=19% Similarity=0.356 Sum_probs=58.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHH------
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSE------ 226 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------ 226 (1448)
..++|.|.+|+|||+|+.++...... .+-+.++++-+.+.. .+.++.+++...-... ..+++...
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 46899999999999999999887642 234778888886654 4566666665432111 11122111
Q ss_pred HHHHHHHHHHc--cCcEEEEEcCCCCc
Q 000518 227 RIMMLCNRLKR--EKKILVILDDIWTS 251 (1448)
Q Consensus 227 ~~~~l~~~l~~--~k~~LlVlDdv~~~ 251 (1448)
..-.+-++++. ++++|+++||+...
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecChHHH
Confidence 12234455553 79999999998654
No 387
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.97 E-value=0.11 Score=55.62 Aligned_cols=59 Identities=25% Similarity=0.300 Sum_probs=37.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEE-------EEecCCcCHHHHH--HHHHHHhCC
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVF-------AEVSQTPDLKRIR--REIADQLGL 217 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~w-------v~v~~~~~~~~~~--~~i~~~l~~ 217 (1448)
...+|.++||+|+||||..+.++...+.++.-..++= +....+.++++.. ++..++-+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~L 85 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQL 85 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCC
Confidence 3468899999999999999999998875433222221 1223344555544 345555543
No 388
>PRK03839 putative kinase; Provisional
Probab=92.97 E-value=0.082 Score=55.87 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=22.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
.|.|.|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999874
No 389
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.96 E-value=0.14 Score=52.97 Aligned_cols=114 Identities=23% Similarity=0.263 Sum_probs=57.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC--CcCHHHHHHHHHHHhCCCCCCCChHHHH-HHHHHHHH
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ--TPDLKRIRREIADQLGLNFCEESDSERI-MMLCNRLK 236 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~l~~~l~ 236 (1448)
-.+++|+|+.|+|||||.+.++.... .....+++.-.. ..+..+..+ +.++.- ..-+..+.. -.+.+.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHHHHHHHh
Confidence 35899999999999999999987543 234555543211 111111111 111110 001112221 12333444
Q ss_pred ccCcEEEEEcCCCCccc---hhhccCCCCC-CCCCcEEEEEeccchhhh
Q 000518 237 REKKILVILDDIWTSLD---LERTGIPFGD-VHRGCKILVTSRRRDVLV 281 (1448)
Q Consensus 237 ~~k~~LlVlDdv~~~~~---~~~l~~~l~~-~~~gs~ilvTTR~~~v~~ 281 (1448)
.++-++++|+.-..-| ...+...+.. ...|..||++|.+.....
T Consensus 99 -~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 -RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred -cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 5778889999754321 2222222211 123667888888876443
No 390
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.95 E-value=0.33 Score=58.52 Aligned_cols=90 Identities=19% Similarity=0.224 Sum_probs=50.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEE-EEecCCc-CHHHHHHHHHHHhCCCCCCCChH------HHHHHHH
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVF-AEVSQTP-DLKRIRREIADQLGLNFCEESDS------ERIMMLC 232 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~w-v~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~------~~~~~l~ 232 (1448)
.-.+|+|++|+|||||++.+++.... ++-+..++ +-|.+.. .+.++.+.+-..+-....+.... ..+-.+-
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~A 495 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERA 495 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHH
Confidence 46799999999999999999987653 23344443 3445443 33344333311111111111111 1122233
Q ss_pred HHHH-ccCcEEEEEcCCCCc
Q 000518 233 NRLK-REKKILVILDDIWTS 251 (1448)
Q Consensus 233 ~~l~-~~k~~LlVlDdv~~~ 251 (1448)
+++. +++.+||++|++...
T Consensus 496 e~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 496 KRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHcCCCEEEEEeCchHH
Confidence 4443 489999999998654
No 391
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.93 E-value=0.34 Score=50.18 Aligned_cols=81 Identities=21% Similarity=0.142 Sum_probs=46.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHcc-Cc
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE-KK 240 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-k~ 240 (1448)
++.|.|..|+|||++|.+++... ...++++.-.+.++. ++.+.|.+.-......-...+....+.+.+.+. +.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCC
Confidence 36799999999999999998651 245667766666654 345454443222211111122223333434322 33
Q ss_pred EEEEEcCC
Q 000518 241 ILVILDDI 248 (1448)
Q Consensus 241 ~LlVlDdv 248 (1448)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 47889986
No 392
>PTZ00088 adenylate kinase 1; Provisional
Probab=92.92 E-value=0.28 Score=53.60 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
.|.|.|++|+||||+|+.+++...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999998764
No 393
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.89 E-value=0.45 Score=53.42 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=30.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ 200 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~ 200 (1448)
-.++.|.|++|+|||++|.+++.....+ =..+++++...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 4689999999999999999987765322 24677888764
No 394
>PRK13949 shikimate kinase; Provisional
Probab=92.86 E-value=0.11 Score=54.16 Aligned_cols=24 Identities=46% Similarity=0.443 Sum_probs=22.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
-|.|+|+.|+||||+|+.+++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998875
No 395
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.86 E-value=0.26 Score=51.44 Aligned_cols=26 Identities=42% Similarity=0.436 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
-.+++|+|+.|+|||||++.++.-..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC
Confidence 35899999999999999999987543
No 396
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.83 E-value=0.5 Score=56.19 Aligned_cols=89 Identities=19% Similarity=0.338 Sum_probs=53.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHHH---
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSER--- 227 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 227 (1448)
+-..++|+|..|+|||||++.+++... .+.++.+-+.+.. .+.++..+.+..-+.. ..+++....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 345789999999999999999987654 3455556665544 4556555554432211 111111111
Q ss_pred ---HHHHHHHHH-ccCcEEEEEcCCCCc
Q 000518 228 ---IMMLCNRLK-REKKILVILDDIWTS 251 (1448)
Q Consensus 228 ---~~~l~~~l~-~~k~~LlVlDdv~~~ 251 (1448)
.-.+-+++. +++++|+++||+-..
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 122334443 489999999999654
No 397
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.78 E-value=0.19 Score=62.98 Aligned_cols=79 Identities=16% Similarity=0.169 Sum_probs=58.9
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000518 135 NEGHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 214 (1448)
+.....+.|+++.++.|...+... +.+.++|++|+||||+|+.+++... ...++..+|..- ...+...+++.+...
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~n-p~~~~~~~~~~v~~~ 102 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPN-PEDPNNPKIRTVPAG 102 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeC-CCcchHHHHHHHHHh
Confidence 344567889988888888776644 4799999999999999999998753 334677888654 444677777777766
Q ss_pred hCC
Q 000518 215 LGL 217 (1448)
Q Consensus 215 l~~ 217 (1448)
++.
T Consensus 103 ~G~ 105 (637)
T PRK13765 103 KGK 105 (637)
T ss_pred cCH
Confidence 654
No 398
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.74 E-value=0.6 Score=55.80 Aligned_cols=90 Identities=23% Similarity=0.380 Sum_probs=56.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHHH-----
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSER----- 227 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 227 (1448)
..++|.|..|+|||||+.+++....... -+.++++-+.+.. .+.++.+++...-... ..+++....
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 4689999999999999999987765322 2467777776554 5667777766532211 111211111
Q ss_pred -HHHHHHHHH--ccCcEEEEEcCCCCc
Q 000518 228 -IMMLCNRLK--REKKILVILDDIWTS 251 (1448)
Q Consensus 228 -~~~l~~~l~--~~k~~LlVlDdv~~~ 251 (1448)
.-.+-++++ +++++||++|++...
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecchHHH
Confidence 222344453 479999999998654
No 399
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=92.74 E-value=0.41 Score=57.01 Aligned_cols=88 Identities=19% Similarity=0.280 Sum_probs=50.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCC------CCCCChHHH------H
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLN------FCEESDSER------I 228 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~------~~~~~~~~~------~ 228 (1448)
..++|+|..|+|||||++.++...+ ....++|..-....++.++........... ..+++.... .
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 5799999999999999998876443 223445544334455555554444332111 111111111 1
Q ss_pred HHHHHHHH-ccCcEEEEEcCCCCc
Q 000518 229 MMLCNRLK-REKKILVILDDIWTS 251 (1448)
Q Consensus 229 ~~l~~~l~-~~k~~LlVlDdv~~~ 251 (1448)
-.+-+++. +++++|+++||+-..
T Consensus 243 ~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHcCCCEEEeccchHHH
Confidence 12333333 479999999998654
No 400
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.73 E-value=0.42 Score=62.15 Aligned_cols=179 Identities=20% Similarity=0.281 Sum_probs=93.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHh---cc-----------CCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCC
Q 000518 158 PYVYMIGVYGMAGIGKTTLVKEVARLAK---EG-----------RIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEES 223 (1448)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~~~~~~~---~~-----------~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~ 223 (1448)
.+.+++.|.|+.+.||||+.+.++-..- .. ..|+. ++..+....++..-...+...
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lStfS~~--------- 394 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSLSTFSGH--------- 394 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhchhHHHHH---------
Confidence 3457899999999999999999975421 00 11222 223333322222211111110
Q ss_pred hHHHHHHHHHHHHccCcEEEEEcCCCCccc---hhhc----cCCCCCCCCCcEEEEEeccchhhhhcCcccc--eEEeec
Q 000518 224 DSERIMMLCNRLKREKKILVILDDIWTSLD---LERT----GIPFGDVHRGCKILVTSRRRDVLVSEMHCQN--NYCVSV 294 (1448)
Q Consensus 224 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~~~l----~~~l~~~~~gs~ilvTTR~~~v~~~~~~~~~--~~~l~~ 294 (1448)
......+.+.+ .++-|+++|+...-.+ -..+ ...+. ..|+.+|+||....+......... ...+.
T Consensus 395 -m~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~- 468 (782)
T PRK00409 395 -MTNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE- 468 (782)
T ss_pred -HHHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-
Confidence 01111222222 4778999999865422 1122 11221 247899999999887663111111 12221
Q ss_pred CChHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHHHHhcCCChHHHHHHHHHHh
Q 000518 295 LNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELR 358 (1448)
Q Consensus 295 L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~w~~~l~~l~ 358 (1448)
++.+...-.++-..|... ...|-.|++++ |+|-.|.--|..+-.....+.+.++..+.
T Consensus 469 ~d~~~l~~~Ykl~~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 469 FDEETLRPTYRLLIGIPG-----KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred EecCcCcEEEEEeeCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 121111111111113211 22366788777 79999888888887766666777777776
No 401
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.69 E-value=0.39 Score=61.12 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=55.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC------CChHHHHHHHH
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE------ESDSERIMMLC 232 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~ 232 (1448)
.-+++-|.|+.|+||||||.+++...... =..++|++..+.++.. .+++++.+... .........+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 34789999999999999998877665422 2567899888877743 56667664321 12223333333
Q ss_pred HHHHccCcEEEEEcCCC
Q 000518 233 NRLKREKKILVILDDIW 249 (1448)
Q Consensus 233 ~~l~~~k~~LlVlDdv~ 249 (1448)
..+.+++--|||+|-+.
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 33444567789999885
No 402
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.65 E-value=0.42 Score=52.20 Aligned_cols=120 Identities=20% Similarity=0.191 Sum_probs=67.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC-----CcCHHHHHHHHHHHhCCCC------CCC-ChHH
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-----TPDLKRIRREIADQLGLNF------CEE-SDSE 226 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~-----~~~~~~~~~~i~~~l~~~~------~~~-~~~~ 226 (1448)
+-.+++|||-.|+||||+++.+..-... -.+.+++.-.+ .....+-..++++.++... +.+ +..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 3468999999999999999999976542 23334333111 2223344556666665431 111 2223
Q ss_pred HHHHHHHHHHccCcEEEEEcCCCCccc------hhhccCCCCCCCCCcEEEEEeccchhhhh
Q 000518 227 RIMMLCNRLKREKKILVILDDIWTSLD------LERTGIPFGDVHRGCKILVTSRRRDVLVS 282 (1448)
Q Consensus 227 ~~~~l~~~l~~~k~~LlVlDdv~~~~~------~~~l~~~l~~~~~gs~ilvTTR~~~v~~~ 282 (1448)
..+-...+...-+.-++|.|+--+.-+ .-.+...+ ....|-..+..|.+-.++..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dl-q~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDL-QEELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHH-HHHhCCeEEEEEEEHHhhhh
Confidence 333333333346889999998654422 11111111 12235668888888888774
No 403
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=92.65 E-value=0.28 Score=52.52 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=22.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLA 184 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~ 184 (1448)
++++|.|+.|.||||+.+.++...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999998655
No 404
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.64 E-value=0.28 Score=53.99 Aligned_cols=86 Identities=16% Similarity=0.252 Sum_probs=49.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCC----------------C---
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNF----------------C--- 220 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~----------------~--- 220 (1448)
-.++.|.|++|+|||++|.+++...-.+ .=+.++|++..+.. +++.+.+. .++.+. .
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccccc
Confidence 3589999999999999999988655321 02456777765543 44444432 333210 0
Q ss_pred --CCChHHHHHHHHHHHHccCcEEEEEcCCC
Q 000518 221 --EESDSERIMMLCNRLKREKKILVILDDIW 249 (1448)
Q Consensus 221 --~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 249 (1448)
..+.......+.+.+.+.+...+|+|.+.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 12233444555555554455788888863
No 405
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.64 E-value=0.92 Score=46.10 Aligned_cols=115 Identities=23% Similarity=0.216 Sum_probs=60.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC---CcCHHHHHHHHHHHh-----CCC--CCCCChHH---H
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ---TPDLKRIRREIADQL-----GLN--FCEESDSE---R 227 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~---~~~~~~~~~~i~~~l-----~~~--~~~~~~~~---~ 227 (1448)
..|-|++..|.||||+|...+-+.--. .+ .+.++-.-+ ......+++.+- .+ +.. +......+ .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~-g~-~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH-GY-RVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC-CC-eEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 467888889999999999998876522 22 333433322 233333333330 01 110 01111111 1
Q ss_pred ----HHHHHHHHHccCcEEEEEcCCCCc-----cchhhccCCCCCCCCCcEEEEEeccch
Q 000518 228 ----IMMLCNRLKREKKILVILDDIWTS-----LDLERTGIPFGDVHRGCKILVTSRRRD 278 (1448)
Q Consensus 228 ----~~~l~~~l~~~k~~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~ilvTTR~~~ 278 (1448)
.+...+.+..++-=|||||++-.. .+.+.+...+.....+.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 112233333345669999998543 223333333433445678999999864
No 406
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.63 E-value=0.16 Score=60.53 Aligned_cols=46 Identities=24% Similarity=0.243 Sum_probs=34.0
Q ss_pred ccccHHHHHHHHHHHHc-------CC---------CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 140 FIESRESILNDILDALR-------GP---------YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 140 ~~~gR~~~~~~l~~~L~-------~~---------~~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
.++|.+..++.+...+. .. ...-+.++|+.|+|||++|+.++....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46888888777754431 00 125689999999999999999997653
No 407
>PRK00625 shikimate kinase; Provisional
Probab=92.58 E-value=0.097 Score=54.46 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
.|.++||.|+||||+|+.+++...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998764
No 408
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.55 E-value=0.93 Score=52.24 Aligned_cols=28 Identities=36% Similarity=0.509 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~ 186 (1448)
+..+++++|++|+||||++..++...+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4579999999999999999999998863
No 409
>PRK13768 GTPase; Provisional
Probab=92.52 E-value=0.51 Score=52.70 Aligned_cols=37 Identities=32% Similarity=0.504 Sum_probs=27.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEe
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV 198 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v 198 (1448)
..++.|.|+||+||||++..+........ ..++.|+.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g--~~v~~i~~ 38 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQG--YDVAIVNL 38 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcC--CceEEEEC
Confidence 36899999999999999999998876322 23444444
No 410
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.52 E-value=0.12 Score=58.24 Aligned_cols=89 Identities=19% Similarity=0.248 Sum_probs=47.7
Q ss_pred HHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHH
Q 000518 149 NDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERI 228 (1448)
Q Consensus 149 ~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 228 (1448)
..+++.+...+ +-+.++|+.|+|||++++......... .| .+.-++.+...+...+++.+-..+......
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~-~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~------- 92 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSD-KY-LVITINFSAQTTSNQLQKIIESKLEKRRGR------- 92 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTC-CE-EEEEEES-TTHHHHHHHHCCCTTECECTTE-------
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCcc-cc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC-------
Confidence 34555554444 456999999999999999988654321 11 133455666555554443222222110000
Q ss_pred HHHHHHHHccCcEEEEEcCCCC
Q 000518 229 MMLCNRLKREKKILVILDDIWT 250 (1448)
Q Consensus 229 ~~l~~~l~~~k~~LlVlDdv~~ 250 (1448)
.. .-..+|+.++.+||+.-
T Consensus 93 --~~-gP~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 93 --VY-GPPGGKKLVLFIDDLNM 111 (272)
T ss_dssp --EE-EEESSSEEEEEEETTT-
T ss_pred --CC-CCCCCcEEEEEecccCC
Confidence 00 00026888999999843
No 411
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=92.49 E-value=0.32 Score=56.92 Aligned_cols=73 Identities=27% Similarity=0.436 Sum_probs=44.9
Q ss_pred ccccHHHHHHHHHHHHcC--------------CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCc---ceEEEEEe-cCC
Q 000518 140 FIESRESILNDILDALRG--------------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF---DEVVFAEV-SQT 201 (1448)
Q Consensus 140 ~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f---~~~~wv~v-~~~ 201 (1448)
.++|+++.+..+.-.+.. ...+-|.++|++|+|||++|+.++..... .| +...++.. ...
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~--~fi~vdat~~~e~g~vG 90 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFTEVGYVG 90 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC--eEEEeecceeecCCccc
Confidence 366777776666544431 12367899999999999999999988752 23 22222221 122
Q ss_pred cCHHHHHHHHHHH
Q 000518 202 PDLKRIRREIADQ 214 (1448)
Q Consensus 202 ~~~~~~~~~i~~~ 214 (1448)
.+.+++++.+...
T Consensus 91 ~dvE~i~r~l~e~ 103 (441)
T TIGR00390 91 RDVESMVRDLTDA 103 (441)
T ss_pred CCHHHHHHHHHHH
Confidence 3566666666543
No 412
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=0.3 Score=55.96 Aligned_cols=86 Identities=30% Similarity=0.349 Sum_probs=58.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHHc
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE--SDSERIMMLCNRLKR 237 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 237 (1448)
-.+|.|-|-+|+|||||.-+++.+...+. .+.+|+- ..+..++ +--+++++...... -....++.+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsG--EES~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSG--EESLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeC--CcCHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 36899999999999999999999987443 5666544 4444332 23355666433221 123345667777777
Q ss_pred cCcEEEEEcCCCCc
Q 000518 238 EKKILVILDDIWTS 251 (1448)
Q Consensus 238 ~k~~LlVlDdv~~~ 251 (1448)
.+.-++|+|-+...
T Consensus 167 ~~p~lvVIDSIQT~ 180 (456)
T COG1066 167 EKPDLVVIDSIQTL 180 (456)
T ss_pred cCCCEEEEecccee
Confidence 89999999998543
No 413
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.45 E-value=0.36 Score=55.53 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=26.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 000518 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEG 187 (1448)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~ 187 (1448)
....+|+|.|++|+||||++..+.......
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 467899999999999999999999877643
No 414
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=92.45 E-value=0.71 Score=54.73 Aligned_cols=119 Identities=20% Similarity=0.214 Sum_probs=65.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccC---------Ccc-----------eEEEE--Eec---CCcCHHHHHHHHHHHh
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGR---------IFD-----------EVVFA--EVS---QTPDLKRIRREIADQL 215 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~---------~f~-----------~~~wv--~v~---~~~~~~~~~~~i~~~l 215 (1448)
..|++||+.|+|||||.+.++-+..... +|- ...|. .+. .+....+..+.|+...
T Consensus 417 srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrf 496 (614)
T KOG0927|consen 417 SRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRF 496 (614)
T ss_pred cceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHh
Confidence 5789999999999999999998765211 111 00010 000 1123456677788887
Q ss_pred CCCCCCC-------ChHHHHHHHHHHHHccCcEEEEEcCCCCccch---hhccCCCCCCCCCcEEEEEeccchhhh
Q 000518 216 GLNFCEE-------SDSERIMMLCNRLKREKKILVILDDIWTSLDL---ERTGIPFGDVHRGCKILVTSRRRDVLV 281 (1448)
Q Consensus 216 ~~~~~~~-------~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~---~~l~~~l~~~~~gs~ilvTTR~~~v~~ 281 (1448)
+...+.. ++.+....+..++.=..+.+||||+--+.-+. +.+..++. .-.|. ||++|.+..+..
T Consensus 497 gLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiN-e~~Gg-vv~vSHDfrlI~ 570 (614)
T KOG0927|consen 497 GLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAIN-EFPGG-VVLVSHDFRLIS 570 (614)
T ss_pred CCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHh-ccCCc-eeeeechhhHHH
Confidence 7663332 22222233344444468899999987654322 22222222 12344 666776665544
No 415
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=92.44 E-value=0.44 Score=61.83 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=40.7
Q ss_pred ccccccHHHHHHHHHHHHc--CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC
Q 000518 138 HEFIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ 200 (1448)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~ 200 (1448)
...++|+...+.++.+.+. ...-.-|.|+|..|+|||++|+.+.+... ..-...+.+++..
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~--r~~~~~v~i~c~~ 437 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG--RNNRRMVKMNCAA 437 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC--CCCCCeEEEeccc
Confidence 3457788777777765554 12234689999999999999999987653 1122344455543
No 416
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.43 E-value=0.61 Score=51.79 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
+..|+|++|+|||+||.+++....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 568999999999999999998754
No 417
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=92.42 E-value=0.2 Score=56.96 Aligned_cols=79 Identities=22% Similarity=0.366 Sum_probs=55.9
Q ss_pred cccccHHHHHHHHHHHHc------CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEec----CCc---CHH
Q 000518 139 EFIESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS----QTP---DLK 205 (1448)
Q Consensus 139 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~----~~~---~~~ 205 (1448)
..|+|-++.+++|++.+. +.+-+|+.++||.|.||||||..+.+-.+. | .+|.-.. +.+ =+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~---y--~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE---Y--PIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe---E--EEEEecCCccccChhhhCCH
Confidence 368999999999999887 456789999999999999999999988762 2 3333211 111 135
Q ss_pred HHHHHHHHHhCCCCCCC
Q 000518 206 RIRREIADQLGLNFCEE 222 (1448)
Q Consensus 206 ~~~~~i~~~l~~~~~~~ 222 (1448)
+..+++.+.++.....+
T Consensus 136 ~~r~~~~~~~~~~i~g~ 152 (358)
T PF08298_consen 136 ELRREFEDELGIRIEGE 152 (358)
T ss_pred hHHHHHHHHhCcccCCC
Confidence 55566666666644433
No 418
>PF13245 AAA_19: Part of AAA domain
Probab=92.39 E-value=0.27 Score=43.12 Aligned_cols=26 Identities=27% Similarity=0.157 Sum_probs=19.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLA 184 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~ 184 (1448)
+-+++.|.|++|+|||+++.+.....
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34678899999999995555555444
No 419
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.35 E-value=0.3 Score=59.22 Aligned_cols=85 Identities=25% Similarity=0.303 Sum_probs=50.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHHc
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE--SDSERIMMLCNRLKR 237 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 237 (1448)
-.++.|.|.+|+|||||+.+++.....+ -..++|++..+. ..++.. -++.++.+.... ......+.+.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4699999999999999999999877522 235677776543 333322 244555422110 000113344444444
Q ss_pred cCcEEEEEcCCC
Q 000518 238 EKKILVILDDIW 249 (1448)
Q Consensus 238 ~k~~LlVlDdv~ 249 (1448)
.+.-+||+|.+.
T Consensus 155 ~~~~lVVIDSIq 166 (446)
T PRK11823 155 EKPDLVVIDSIQ 166 (446)
T ss_pred hCCCEEEEechh
Confidence 456678888774
No 420
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.34 E-value=0.03 Score=57.43 Aligned_cols=70 Identities=13% Similarity=0.112 Sum_probs=36.6
Q ss_pred cCCcchhhhcccceeEEeccCCcccc--CCCCcccCcccEEEEecCCCCccccchhhhhccccccEEEEeccc
Q 000518 1170 QGFKLDSVVENLEMLEVWWCDNLVNL--VPSSPSFRNLITLEVWYCKGLKNLVTSSTAKSLVQLMQLRIDGCK 1240 (1448)
Q Consensus 1170 ~~~~~~~~l~sL~~L~i~~C~~L~~l--~~~~~~l~sL~~L~I~~C~~L~~l~~~~~~~~l~~L~~L~I~~C~ 1240 (1448)
+|...+..+++++.|.+.+|..+.+. --..+-.++|+.|+|++|++|++-. ...+..+++|+.|.|++.+
T Consensus 116 eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 116 EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCch
Confidence 33444455566666666666655332 0011245677777777777777652 2223344555555554443
No 421
>PRK04040 adenylate kinase; Provisional
Probab=92.33 E-value=0.12 Score=54.69 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
.+|+|+|++|+||||+++.+.....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999998873
No 422
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.31 E-value=0.52 Score=58.20 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=53.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC----------------C
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE----------------E 222 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~----------------~ 222 (1448)
.-.++.|.|++|+|||||+.+++.....+ =..+++++..+ +..++.+.+ +.++.+... .
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 34699999999999999999999887522 24566665544 445555543 444433211 1
Q ss_pred ChHHHHHHHHHHHHccCcEEEEEcCCC
Q 000518 223 SDSERIMMLCNRLKREKKILVILDDIW 249 (1448)
Q Consensus 223 ~~~~~~~~l~~~l~~~k~~LlVlDdv~ 249 (1448)
...+.+..+.+.+.+.+.-.+|+|.+.
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 124455555666654455567777763
No 423
>PRK08149 ATP synthase SpaL; Validated
Probab=92.31 E-value=0.5 Score=56.13 Aligned_cols=88 Identities=14% Similarity=0.260 Sum_probs=53.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecC-CcCHHHHHHHHHHHhCCC-------CCCCChHH-----
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLN-------FCEESDSE----- 226 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 226 (1448)
-..++|+|..|+|||||++.++.... -+.++...+.. ..++.++..+........ ..+++...
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 35789999999999999999986443 34444444443 345666666666543221 11121111
Q ss_pred -HHHHHHHHHH-ccCcEEEEEcCCCCc
Q 000518 227 -RIMMLCNRLK-REKKILVILDDIWTS 251 (1448)
Q Consensus 227 -~~~~l~~~l~-~~k~~LlVlDdv~~~ 251 (1448)
....+-+++. ++|++||++||+-..
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 1222334443 489999999998654
No 424
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.30 E-value=0.11 Score=50.32 Aligned_cols=36 Identities=31% Similarity=0.358 Sum_probs=27.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP 202 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~ 202 (1448)
.+-|.|.|-+|+||||+|.+++.... .-|+++++-.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~-------~~~i~isd~v 42 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG-------LEYIEISDLV 42 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC-------CceEehhhHH
Confidence 35689999999999999999996554 2367666543
No 425
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.28 E-value=0.25 Score=56.51 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=38.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHH
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 210 (1448)
.+++.+.|.||+||||+|.+.+-...... ..++-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999887766433 44777888877777766544
No 426
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.25 E-value=0.95 Score=49.93 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=30.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT 201 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~ 201 (1448)
.-.++.|.|.+|+||||+|.+++...-. .-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~--~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR--DGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh--cCCeEEEEEccCC
Confidence 3468999999999999999998765432 2356788876443
No 427
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=92.24 E-value=0.35 Score=50.70 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
-.+++|+|+.|+|||||.+.++....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC
Confidence 35899999999999999999997653
No 428
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=92.22 E-value=0.1 Score=50.13 Aligned_cols=27 Identities=41% Similarity=0.570 Sum_probs=19.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhccCCcc
Q 000518 163 IGVYGMAGIGKTTLVKEVARLAKEGRIFD 191 (1448)
Q Consensus 163 i~I~G~gG~GKTtLa~~~~~~~~~~~~f~ 191 (1448)
|.|+|.+|+||||+|+.++.... ..|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~--~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG--LSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----EE
T ss_pred EeeECCCccHHHHHHHHHHHHcC--Ccee
Confidence 67999999999999999998765 4454
No 429
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=92.20 E-value=0.32 Score=61.14 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=37.2
Q ss_pred CccccccHHHHHHHHHHHHc--CCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 137 GHEFIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
....++|+...+.++.+.+. ...-.-|.|+|..|+|||++|+.+.+...
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 34567888888888777665 12233577999999999999999998653
No 430
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.18 E-value=3.3 Score=51.09 Aligned_cols=129 Identities=22% Similarity=0.203 Sum_probs=68.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhcc-C-----CcceEEEEEecC-----C----------c-C-HHHHHHHHHHHhCC
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEG-R-----IFDEVVFAEVSQ-----T----------P-D-LKRIRREIADQLGL 217 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~-~-----~f~~~~wv~v~~-----~----------~-~-~~~~~~~i~~~l~~ 217 (1448)
..|+|+|+.|+|||||.+.+....... . .--.+.++.-.. . + + .+.-.+..+.+++-
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F 428 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGF 428 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCC
Confidence 479999999999999999997655321 0 001111221111 0 0 0 13334444444443
Q ss_pred CCCC-------CChHHHHHHHHHHHHccCcEEEEEcCCCCccch---hhccCCCCCCCCCcEEEEEeccchhhhhcCccc
Q 000518 218 NFCE-------ESDSERIMMLCNRLKREKKILVILDDIWTSLDL---ERTGIPFGDVHRGCKILVTSRRRDVLVSEMHCQ 287 (1448)
Q Consensus 218 ~~~~-------~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~---~~l~~~l~~~~~gs~ilvTTR~~~v~~~~~~~~ 287 (1448)
.... -+-.+..+-....+.-.+.-+||||+=-+.-|. +.+..++. .-+|+ ||+.|.++..... -+.
T Consensus 429 ~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~-~f~Gt-vl~VSHDr~Fl~~--va~ 504 (530)
T COG0488 429 TGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALL-DFEGT-VLLVSHDRYFLDR--VAT 504 (530)
T ss_pred ChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHH-hCCCe-EEEEeCCHHHHHh--hcc
Confidence 2211 122233333344444478899999987665322 22222222 12465 8888999988773 234
Q ss_pred ceEEee
Q 000518 288 NNYCVS 293 (1448)
Q Consensus 288 ~~~~l~ 293 (1448)
+.+.+.
T Consensus 505 ~i~~~~ 510 (530)
T COG0488 505 RIWLVE 510 (530)
T ss_pred eEEEEc
Confidence 455554
No 431
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.12 E-value=0.5 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
.|.|+|++|+||||+|+.++....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999987754
No 432
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.11 E-value=0.48 Score=52.98 Aligned_cols=54 Identities=24% Similarity=0.207 Sum_probs=40.6
Q ss_pred ccccccHHHHHHH---HHHHHcCC--CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcc
Q 000518 138 HEFIESRESILND---ILDALRGP--YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD 191 (1448)
Q Consensus 138 ~~~~~gR~~~~~~---l~~~L~~~--~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~ 191 (1448)
..+++|..+..+. ++++.... .-+.|.|+|++|+|||+||..+.+..-..-+|.
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 4578887655443 55666533 347899999999999999999999987655664
No 433
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.09 E-value=0.41 Score=50.15 Aligned_cols=25 Identities=40% Similarity=0.534 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLA 184 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~ 184 (1448)
-.+++|+|+.|.|||||++.++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998754
No 434
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.06 E-value=0.57 Score=53.96 Aligned_cols=39 Identities=31% Similarity=0.526 Sum_probs=30.2
Q ss_pred HHHHHHHc--CCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 000518 149 NDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKEG 187 (1448)
Q Consensus 149 ~~l~~~L~--~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~ 187 (1448)
.++++.+. ..+..+|+|.|++|+|||||+..+....+..
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444443 3567899999999999999999999888743
No 435
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=91.97 E-value=0.81 Score=52.03 Aligned_cols=52 Identities=23% Similarity=0.147 Sum_probs=36.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 214 (1448)
-.++.|.|++|+||||+|.+++...... +=..++|+++.. +..++.+.+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEccc--CHHHHHHHHHHH
Confidence 3588999999999999999998876422 124677887765 345555555443
No 436
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.90 E-value=0.18 Score=52.05 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~ 186 (1448)
..++++|+|+.|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4579999999999999999999988764
No 437
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=91.89 E-value=0.5 Score=49.53 Aligned_cols=121 Identities=20% Similarity=0.213 Sum_probs=65.5
Q ss_pred HHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc-CCcceEEEEEecCCcCHHHHHHHHHHHhCC--------CCCC
Q 000518 151 ILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEG-RIFDEVVFAEVSQTPDLKRIRREIADQLGL--------NFCE 221 (1448)
Q Consensus 151 l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~-~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~--------~~~~ 221 (1448)
+++.+-....--..|.|++|+||||+.+.+++-.... +.|-..--+-+.... +|+..+.. ..+-
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers-------EIag~~~gvpq~~~g~R~dV 200 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS-------EIAGCLNGVPQHGRGRRMDV 200 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc-------hhhccccCCchhhhhhhhhh
Confidence 5555555666668899999999999999999876532 233221111111111 22221111 0000
Q ss_pred CChHHHHHHHHHHHHccCcEEEEEcCCCCccchhhccCCCCCCCCCcEEEEEeccchhhh
Q 000518 222 ESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLV 281 (1448)
Q Consensus 222 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~ 281 (1448)
.+.--..+-+...+.+--+=++|+|++...++-.++..++. .|.+++.|..-..+.+
T Consensus 201 ld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~~---~GVkli~TaHG~~ied 257 (308)
T COG3854 201 LDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTALH---AGVKLITTAHGNGIED 257 (308)
T ss_pred cccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHh---cCcEEEEeeccccHHH
Confidence 00000111222233334677899999998876665554443 6888887776554433
No 438
>PRK00131 aroK shikimate kinase; Reviewed
Probab=91.85 E-value=0.14 Score=53.87 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
...|.|+|++|+||||+|+.++....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999999874
No 439
>PRK14532 adenylate kinase; Provisional
Probab=91.83 E-value=0.49 Score=50.39 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 000518 163 IGVYGMAGIGKTTLVKEVARLA 184 (1448)
Q Consensus 163 i~I~G~gG~GKTtLa~~~~~~~ 184 (1448)
|.|.|++|+||||+|+.++...
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7889999999999999998765
No 440
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=91.83 E-value=0.23 Score=57.53 Aligned_cols=47 Identities=26% Similarity=0.296 Sum_probs=39.7
Q ss_pred ccccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 000518 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1448)
Q Consensus 138 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~ 184 (1448)
+..++|.+..+..++-.+.+....-+.|.|..|+||||+++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 45688999998888777777667778899999999999999998665
No 441
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=91.79 E-value=0.27 Score=57.25 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=32.7
Q ss_pred ccccHHHHHHHHHHHHc--CCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 000518 140 FIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1448)
Q Consensus 140 ~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gG~GKTtLa~~~~~~~ 184 (1448)
.++|+...+.++.+.+. ...-.-|.|+|..|+||+++|+.+....
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s 53 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC
Confidence 46677777777766654 1222458899999999999999998643
No 442
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.78 E-value=0.31 Score=50.07 Aligned_cols=112 Identities=21% Similarity=0.295 Sum_probs=57.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc--CHHHHHHHHHHHhCCCCCCCChH-HHHHHHHHHHHc
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP--DLKRIRREIADQLGLNFCEESDS-ERIMMLCNRLKR 237 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~~~~~-~~~~~l~~~l~~ 237 (1448)
.+++|+|..|.|||||++.++.... .....+++.-.... ...+..+ .++.-.. -+.. ...-.+.+.+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~----~i~~~~q-lS~G~~~r~~l~~~l~- 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEELRR----RIGYVPQ-LSGGQRQRVALARALL- 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHHHh----ceEEEee-CCHHHHHHHHHHHHHh-
Confidence 6899999999999999999987653 24455554322111 1111111 1111000 1111 11122334444
Q ss_pred cCcEEEEEcCCCCcc---chhhccCCCCC-CCCCcEEEEEeccchhhh
Q 000518 238 EKKILVILDDIWTSL---DLERTGIPFGD-VHRGCKILVTSRRRDVLV 281 (1448)
Q Consensus 238 ~k~~LlVlDdv~~~~---~~~~l~~~l~~-~~~gs~ilvTTR~~~v~~ 281 (1448)
...-++++|+....- ....+...+.. ...+..++++|.+.....
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 467889999976442 12222221211 112567888888777655
No 443
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=91.74 E-value=0.31 Score=53.95 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~ 184 (1448)
+..|+|++|+||||++..+....
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 79999999999998888888776
No 444
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=91.71 E-value=0.12 Score=54.20 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~ 184 (1448)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 445
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.62 E-value=0.12 Score=55.62 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~ 184 (1448)
+|+|.|+.|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 446
>PHA02774 E1; Provisional
Probab=91.62 E-value=0.32 Score=59.00 Aligned_cols=48 Identities=23% Similarity=0.412 Sum_probs=34.4
Q ss_pred HHHHHHHHHcC-CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEe
Q 000518 147 ILNDILDALRG-PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV 198 (1448)
Q Consensus 147 ~~~~l~~~L~~-~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v 198 (1448)
-+..+..++.. .+...+.|+|++|+|||.+|..+.+-.. -..+.||+.
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~ 468 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNS 468 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEEC
Confidence 34455556553 3456899999999999999999998764 233456664
No 447
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=91.61 E-value=0.9 Score=53.99 Aligned_cols=91 Identities=22% Similarity=0.341 Sum_probs=57.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccC--Ccc---------eEEEEEecCCcCHHHHHHHHHHHhC-CC-------CCC
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGR--IFD---------EVVFAEVSQTPDLKRIRREIADQLG-LN-------FCE 221 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~--~f~---------~~~wv~v~~~~~~~~~~~~i~~~l~-~~-------~~~ 221 (1448)
.-++|.|-+|+|||||+.++++..+... ..| .++++-+.+.....+.+.+.+..-+ .. ..+
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 4689999999999999999998764100 012 5667777777666665555555444 21 111
Q ss_pred CChHH------HHHHHHHHHH--ccCcEEEEEcCCCCc
Q 000518 222 ESDSE------RIMMLCNRLK--REKKILVILDDIWTS 251 (1448)
Q Consensus 222 ~~~~~------~~~~l~~~l~--~~k~~LlVlDdv~~~ 251 (1448)
++... ..-.+-+++. +++++|+++||+..-
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 11111 1223445665 479999999998554
No 448
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=91.59 E-value=1 Score=53.68 Aligned_cols=90 Identities=21% Similarity=0.352 Sum_probs=57.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC-cCHHHHHHHHHHHhCCC-------CCCCChHH------
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-PDLKRIRREIADQLGLN-------FCEESDSE------ 226 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~------ 226 (1448)
..++|.|..|+|||||+.++...... ++-+.++++-+.+. ..+.++++++...-... ..+++...
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~~-~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~ 222 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVAL 222 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHHh-cCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 56899999999999999999877652 22346777777655 35677777765432111 11122111
Q ss_pred HHHHHHHHHH--ccCcEEEEEcCCCCc
Q 000518 227 RIMMLCNRLK--REKKILVILDDIWTS 251 (1448)
Q Consensus 227 ~~~~l~~~l~--~~k~~LlVlDdv~~~ 251 (1448)
..-.+-++++ +++++|||+||+-..
T Consensus 223 ~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 223 TGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 1223445554 379999999999654
No 449
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.56 E-value=0.78 Score=56.67 Aligned_cols=48 Identities=21% Similarity=0.174 Sum_probs=34.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCc-ceEEEEEecCCcCHHHHHHH
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF-DEVVFAEVSQTPDLKRIRRE 210 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f-~~~~wv~v~~~~~~~~~~~~ 210 (1448)
+-+++.|.|++|+||||+|.+++..-. ..+ ..++||+..+ +.+++.+.
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~--~~~ge~~lyvs~eE--~~~~l~~~ 68 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGI--IHFDEPGVFVTFEE--SPQDIIKN 68 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HhCCCCEEEEEEec--CHHHHHHH
Confidence 457999999999999999999976642 122 5678888764 44444444
No 450
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.56 E-value=0.42 Score=52.58 Aligned_cols=55 Identities=27% Similarity=0.361 Sum_probs=41.0
Q ss_pred HHHHHHHc--CCCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcC
Q 000518 149 NDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1448)
Q Consensus 149 ~~l~~~L~--~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~ 203 (1448)
.+++..+. ..+..+|+|.|.+|+|||||.-.+...++.+.+=-.++=|+=|..++
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~T 94 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFT 94 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCC
Confidence 34554444 45667999999999999999999999998666655566666566654
No 451
>PRK00889 adenylylsulfate kinase; Provisional
Probab=91.55 E-value=0.2 Score=52.71 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=24.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~ 186 (1448)
+..+|.|+|++|+||||+|+.++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999998763
No 452
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.51 E-value=0.14 Score=52.00 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
+|.|.|+.|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 453
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=91.48 E-value=0.55 Score=55.77 Aligned_cols=46 Identities=24% Similarity=0.224 Sum_probs=34.6
Q ss_pred ccccHHHHHHHHHHHHc-------C-------C----CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 140 FIESRESILNDILDALR-------G-------P----YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 140 ~~~gR~~~~~~l~~~L~-------~-------~----~~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
.++|.++.++.+...+. . . ....|.++|+.|+|||++|+.++....
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 46888888887765541 1 1 124799999999999999999997653
No 454
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.46 E-value=0.13 Score=52.39 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~ 184 (1448)
++.|.|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998864
No 455
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.44 E-value=0.16 Score=53.42 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=22.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
++|.+.|++|+||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988753
No 456
>PRK06217 hypothetical protein; Validated
Probab=91.43 E-value=0.14 Score=54.21 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=26.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhccCCc--ceEEEE
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIF--DEVVFA 196 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~~~~~f--~~~~wv 196 (1448)
.|.|.|++|+||||+|+++...... .+| |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeec
Confidence 4899999999999999999988642 233 455553
No 457
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.43 E-value=0.28 Score=48.09 Aligned_cols=27 Identities=30% Similarity=0.231 Sum_probs=23.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhc
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~ 186 (1448)
-.+|.+.|.-|+||||+++.++.....
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 358999999999999999999988653
No 458
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.41 E-value=0.16 Score=53.64 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=22.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
.+++|+|+.|+||||+|+.++....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 459
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=91.40 E-value=0.24 Score=57.22 Aligned_cols=48 Identities=25% Similarity=0.298 Sum_probs=38.8
Q ss_pred CccccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHH
Q 000518 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1448)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~ 184 (1448)
++..++|.+..++.+.-.+.+.+..-+.+.|+.|+||||+|+.+..-.
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 456788999988887765544555669999999999999999998764
No 460
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=91.34 E-value=0.56 Score=57.01 Aligned_cols=86 Identities=24% Similarity=0.310 Sum_probs=48.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHH
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE--SDSERIMMLCNRLK 236 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~ 236 (1448)
.-.++.|.|.+|+|||||+.+++....... ..++|++..+. ..++.. -++.++...... ......+.+...+.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 346899999999999999999988765321 35778776543 333322 123343321100 00011233444444
Q ss_pred ccCcEEEEEcCCC
Q 000518 237 REKKILVILDDIW 249 (1448)
Q Consensus 237 ~~k~~LlVlDdv~ 249 (1448)
+.+.-++|+|.+.
T Consensus 168 ~~~~~~vVIDSIq 180 (454)
T TIGR00416 168 EENPQACVIDSIQ 180 (454)
T ss_pred hcCCcEEEEecch
Confidence 4455567777774
No 461
>PTZ00185 ATPase alpha subunit; Provisional
Probab=91.29 E-value=1.2 Score=53.39 Aligned_cols=90 Identities=16% Similarity=0.210 Sum_probs=52.6
Q ss_pred EEEEEEcCCCchHHHHH-HHHHHHHhcc-----CCcceEEEEEecCCcC-HHHHHHHHHHHhC-CC-------CCCCChH
Q 000518 161 YMIGVYGMAGIGKTTLV-KEVARLAKEG-----RIFDEVVFAEVSQTPD-LKRIRREIADQLG-LN-------FCEESDS 225 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa-~~~~~~~~~~-----~~f~~~~wv~v~~~~~-~~~~~~~i~~~l~-~~-------~~~~~~~ 225 (1448)
..++|.|..|+|||+|| -.+.+...+. +.-+.++++-+.+..+ +.++ .+.++.-+ .+ ..+++..
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei-~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARI-HRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHH-HHHHHhcCCccceEEEEECCCCCHH
Confidence 46899999999999997 5567665321 2345678888877654 4443 33333322 11 1111111
Q ss_pred H------HHHHHHHHHH-ccCcEEEEEcCCCCc
Q 000518 226 E------RIMMLCNRLK-REKKILVILDDIWTS 251 (1448)
Q Consensus 226 ~------~~~~l~~~l~-~~k~~LlVlDdv~~~ 251 (1448)
. ..-.+-++++ +++++|+|+||+...
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 1 1112333443 479999999998654
No 462
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=91.29 E-value=0.81 Score=52.47 Aligned_cols=88 Identities=22% Similarity=0.346 Sum_probs=51.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEec-CCcCHHHHHHHHHHHhCCC-------CCCCChHHH----
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS-QTPDLKRIRREIADQLGLN-------FCEESDSER---- 227 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 227 (1448)
-..++|+|..|+|||||++.++.... -+..+..-+. ...++.++.......-+.. ..+++....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999998887543 2334444444 3345566665555432211 111211111
Q ss_pred --HHHHHHHHH-ccCcEEEEEcCCCCc
Q 000518 228 --IMMLCNRLK-REKKILVILDDIWTS 251 (1448)
Q Consensus 228 --~~~l~~~l~-~~k~~LlVlDdv~~~ 251 (1448)
.-.+-+++. +++.+||++||+-..
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 112233332 489999999998654
No 463
>PRK14529 adenylate kinase; Provisional
Probab=91.27 E-value=0.63 Score=50.42 Aligned_cols=84 Identities=21% Similarity=0.208 Sum_probs=45.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhccCCcc-eEE-EEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHccCc
Q 000518 163 IGVYGMAGIGKTTLVKEVARLAKEGRIFD-EVV-FAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1448)
Q Consensus 163 i~I~G~gG~GKTtLa~~~~~~~~~~~~f~-~~~-wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1448)
|.|.|++|+||||+|+.++...... +.+ ..+ .-.+.......+..++++.+-. -..+.-....+.+++.+...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G~----lvpdei~~~lv~~~l~~~~~ 77 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRGD----LVPDDITIPMILETLKQDGK 77 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhccC----cchHHHHHHHHHHHHhccCC
Confidence 7889999999999999999887632 221 111 1122222333333444443211 11222333445556654334
Q ss_pred EEEEEcCCCCc
Q 000518 241 ILVILDDIWTS 251 (1448)
Q Consensus 241 ~LlVlDdv~~~ 251 (1448)
.=+|||+.-..
T Consensus 78 ~g~iLDGfPRt 88 (223)
T PRK14529 78 NGWLLDGFPRN 88 (223)
T ss_pred CcEEEeCCCCC
Confidence 55899997554
No 464
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=91.27 E-value=1.2 Score=50.99 Aligned_cols=48 Identities=17% Similarity=0.334 Sum_probs=36.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc-CHHHHHHHHH
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIA 212 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~ 212 (1448)
..++|.|..|+|||+|++++++... -+.++++-+.+.. .+.+++.++-
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHHH
Confidence 4799999999999999999988643 3577888776654 4566666653
No 465
>PRK06936 type III secretion system ATPase; Provisional
Probab=91.25 E-value=0.76 Score=54.66 Aligned_cols=88 Identities=22% Similarity=0.382 Sum_probs=54.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHHH----
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSER---- 227 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 227 (1448)
-..++|.|..|+|||||.+.+++... -+.++++-+.+.. .+.++....+..-+.. ..+++....
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 35799999999999999999988654 3566777776654 4555554433321111 111111111
Q ss_pred --HHHHHHHHH-ccCcEEEEEcCCCCc
Q 000518 228 --IMMLCNRLK-REKKILVILDDIWTS 251 (1448)
Q Consensus 228 --~~~l~~~l~-~~k~~LlVlDdv~~~ 251 (1448)
.-.+-++++ +++++|+++|++...
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 122334443 489999999999654
No 466
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=91.24 E-value=0.23 Score=57.50 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=42.0
Q ss_pred CccccccHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 137 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
++..++|.++.+..|.-.+.+..+.-|.|.|..|+||||+|+.+++-..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4667899999888888887787887788999999999999999987654
No 467
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=91.22 E-value=0.43 Score=56.55 Aligned_cols=41 Identities=22% Similarity=0.375 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHHHHHHHHhc
Q 000518 146 SILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1448)
Q Consensus 146 ~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~ 186 (1448)
..++.+++.+.......+.|.|+||+|||++.+++.+..+.
T Consensus 8 ~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 8 RVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 45666666666566678899999999999999999998874
No 468
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=91.19 E-value=0.66 Score=55.19 Aligned_cols=89 Identities=18% Similarity=0.274 Sum_probs=50.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCC-------CCCCChHH------
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLN-------FCEESDSE------ 226 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~------ 226 (1448)
-..++|+|..|+|||||++.++...+ ....++...-.....+.++.++.+..-+.. ..+++...
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 35799999999999999988886543 122333222233445566665554332211 11111111
Q ss_pred HHHHHHHHHH-ccCcEEEEEcCCCCc
Q 000518 227 RIMMLCNRLK-REKKILVILDDIWTS 251 (1448)
Q Consensus 227 ~~~~l~~~l~-~~k~~LlVlDdv~~~ 251 (1448)
..-.+-+++. +++++|||+||+-..
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1122334443 479999999998654
No 469
>PRK15453 phosphoribulokinase; Provisional
Probab=91.16 E-value=1.1 Score=49.72 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
+..+|+|.|..|+||||+|+.+.+..+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999997765
No 470
>PRK13947 shikimate kinase; Provisional
Probab=91.16 E-value=0.17 Score=53.01 Aligned_cols=24 Identities=42% Similarity=0.462 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
-|.|+|++|+||||+|+.+++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998875
No 471
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=91.15 E-value=0.28 Score=55.38 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=41.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCC
Q 000518 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGL 217 (1448)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 217 (1448)
..-+++.|.|.+|+|||++|.++..... +....++||+..+. .+++.+.+.+ ++.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~--~~ge~vlyvs~~e~--~~~l~~~~~~-~g~ 75 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGA--REGEPVLYVSTEES--PEELLENARS-FGW 75 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHH--hcCCcEEEEEecCC--HHHHHHHHHH-cCC
Confidence 4557999999999999999999999887 34788999987765 3444444433 444
No 472
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=91.13 E-value=1.3 Score=48.01 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHH
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLA 184 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~ 184 (1448)
-.+++|.|+.|+|||||++.++.-.
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3589999999999999999998653
No 473
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=91.09 E-value=0.17 Score=53.14 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=22.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
+|+|.|..|+||||+|+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998876
No 474
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.08 E-value=1.9 Score=50.71 Aligned_cols=74 Identities=23% Similarity=0.306 Sum_probs=45.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHc
Q 000518 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1448)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1448)
..++-+.+.|+.|.|||.||++|+.+.... +.+++. ..+...+.++. ...++.+....+.
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~~at-------ff~iSa------------ssLtsK~~Ge~-eK~vralf~vAr~ 243 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATESGAT-------FFNISA------------SSLTSKYVGES-EKLVRALFKVARS 243 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhhcce-------EeeccH------------HHhhhhccChH-HHHHHHHHHHHHh
Confidence 345667799999999999999999987632 222221 12222223222 2334444444444
Q ss_pred cCcEEEEEcCCCCc
Q 000518 238 EKKILVILDDIWTS 251 (1448)
Q Consensus 238 ~k~~LlVlDdv~~~ 251 (1448)
.+...+++|+++..
T Consensus 244 ~qPsvifidEidsl 257 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSL 257 (428)
T ss_pred cCCeEEEechhHHH
Confidence 67888889998543
No 475
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.06 E-value=1.2 Score=45.92 Aligned_cols=118 Identities=19% Similarity=0.081 Sum_probs=61.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEE--EEEecCCcCHHHHHHHHH---HHhCCC--CCCCCh---HHHHH
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVV--FAEVSQTPDLKRIRREIA---DQLGLN--FCEESD---SERIM 229 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~--wv~v~~~~~~~~~~~~i~---~~l~~~--~~~~~~---~~~~~ 229 (1448)
...|-|++..|.||||.|..++-+..-. .+...+ |+.-........+++... .+.+.. +..... ...+.
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~-g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGH-GKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 4678889999999999999999887532 232221 232222233333433320 000111 111111 11122
Q ss_pred ----HHHHHHHccCcEEEEEcCCCCc-----cchhhccCCCCCCCCCcEEEEEeccch
Q 000518 230 ----MLCNRLKREKKILVILDDIWTS-----LDLERTGIPFGDVHRGCKILVTSRRRD 278 (1448)
Q Consensus 230 ----~l~~~l~~~k~~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~ilvTTR~~~ 278 (1448)
...+.+..++-=|||||++-.. -+.+.+...+.....+.-||+|-|+..
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 2333444456679999998533 223333333433446778999999773
No 476
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=90.95 E-value=0.45 Score=51.38 Aligned_cols=56 Identities=18% Similarity=0.121 Sum_probs=41.1
Q ss_pred CccccccHHHHHHH---HHHHHcC--CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcce
Q 000518 137 GHEFIESRESILND---ILDALRG--PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDE 192 (1448)
Q Consensus 137 ~~~~~~gR~~~~~~---l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~ 192 (1448)
...+|+|.+...+. +++++.. -.-+.+.+.|++|.|||+||..+.+..-.+-.|-.
T Consensus 36 ~~~g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlAlaisqELG~kvPFcp 96 (456)
T KOG1942|consen 36 VAAGFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCP 96 (456)
T ss_pred cccccccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCccc
Confidence 45578886655433 4555542 23478999999999999999999999887766744
No 477
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.95 E-value=1.1 Score=50.28 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=51.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHc
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1448)
+..+++++|.+|+||||+++.+......+. ..+.+++..... ...+-++..++.++...........+....+.+.+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~--~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 447999999999999999999988765321 244555554321 12222233344444333222233334444445543
Q ss_pred -cCcEEEEEcCCCCc
Q 000518 238 -EKKILVILDDIWTS 251 (1448)
Q Consensus 238 -~k~~LlVlDdv~~~ 251 (1448)
.+.=++|+|..-..
T Consensus 152 ~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 152 EARVDYILIDTAGKN 166 (270)
T ss_pred cCCCCEEEEECCCCC
Confidence 24567888887443
No 478
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.95 E-value=0.046 Score=56.13 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=51.0
Q ss_pred CcccccCeEeccccccccchhcccCCcccccceeEEEEeeCCCCCcCCCchhhcCCCCccEEeeccCcchhh
Q 000518 780 NAFPVLESMFLHNLIHLEKICDGLLTAEFFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEE 851 (1448)
Q Consensus 780 ~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~ 851 (1448)
..+++++.|.+.+|..+.+|+...... .+++|+.|+|++|+.+++-. +..+..+++|+.|.+.+.+.+..
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCchhhhc
Confidence 345677788888888888887655443 68899999999999888742 24456778888888877665543
No 479
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=90.90 E-value=0.41 Score=48.26 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=27.5
Q ss_pred cCCCeEEEEEEcCCCchHHHHHHHHHHHHhcc
Q 000518 156 RGPYVYMIGVYGMAGIGKTTLVKEVARLAKEG 187 (1448)
Q Consensus 156 ~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~ 187 (1448)
...+..+|.+.|..|+||||+|.+++.....+
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 34566799999999999999999999988643
No 480
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=90.89 E-value=0.083 Score=57.65 Aligned_cols=173 Identities=16% Similarity=0.177 Sum_probs=79.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC---C-ChHHHHHHHHHH
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE---E-SDSERIMMLCNR 234 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~-~~~~~~~~l~~~ 234 (1448)
+.+++.|.|+.|.||||+.+.+..-.-. +..-.+|..... .......++..++..... . .-......+...
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~l---a~~g~~vpa~~~--~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~i 103 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLM---AQIGCFVPCDSA--DIPIVDCILARVGASDSQLKGVSTFMAEMLETAAI 103 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHH---HHhCCCcCcccE--EEeccceeEeeeccccchhcCcChHHHHHHHHHHH
Confidence 4579999999999999999998753210 000011211110 000112222222221110 0 111122222233
Q ss_pred HH-ccCcEEEEEcCC---CCccc-----hhhccCCCCCCCCCcEEEEEeccchhhhhc--CcccceEEeecCChH--HHH
Q 000518 235 LK-REKKILVILDDI---WTSLD-----LERTGIPFGDVHRGCKILVTSRRRDVLVSE--MHCQNNYCVSVLNKE--EAW 301 (1448)
Q Consensus 235 l~-~~k~~LlVlDdv---~~~~~-----~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~--~~~~~~~~l~~L~~~--e~~ 301 (1448)
+. -.++-|+++|+. .+..+ |..+ ..+. ...|+.+|+||....+.... .......++.....+ +..
T Consensus 104 l~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~-~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~ 181 (222)
T cd03285 104 LKSATENSLIIIDELGRGTSTYDGFGLAWAIA-EYIA-TQIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTL 181 (222)
T ss_pred HHhCCCCeEEEEecCcCCCChHHHHHHHHHHH-HHHH-hcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcE
Confidence 31 157889999999 33322 2111 1121 13478899999977665531 111112233222111 211
Q ss_pred HHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHHHHhc
Q 000518 302 SLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLR 343 (1448)
Q Consensus 302 ~Lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~ 343 (1448)
.|..+....... ...|-.+++.+ |+|-.+.--|..+.
T Consensus 182 -~~~Y~l~~G~~~---~s~a~~~a~~~-g~p~~vi~~A~~~~ 218 (222)
T cd03285 182 -TMLYKVEKGACD---QSFGIHVAELA-NFPKEVIEMAKQKA 218 (222)
T ss_pred -eEEEEEeeCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHH
Confidence 121112111111 23466777766 88988877776553
No 481
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=90.89 E-value=0.12 Score=55.61 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=21.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARL 183 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~ 183 (1448)
.+++|.|+.|.||||+.+.++..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 78999999999999999999943
No 482
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=90.88 E-value=5.6 Score=44.98 Aligned_cols=151 Identities=11% Similarity=-0.008 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHcCCCe-EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCC----
Q 000518 145 ESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNF---- 219 (1448)
Q Consensus 145 ~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---- 219 (1448)
...++.+...+..+++ ....++| |+||+++|..++...--.+..+. ..+..-...+.|...-..+.
T Consensus 8 ~~~~~~L~~~~~~~rl~hAyLf~G--~~G~~~~A~~~A~~llC~~~~~~-------~~Cg~C~~C~~i~~~~HPD~~~i~ 78 (290)
T PRK07276 8 PKVFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGV-------LPCGHCRSCRLIEQGEFSDVTVIE 78 (290)
T ss_pred HHHHHHHHHHHHcCCcceeeeeeC--CccHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCeeeec
Confidence 3445666666665554 4667777 58999999998876531110000 00000011111111000000
Q ss_pred --CCCChHHHHHHHHHHHH----ccCcEEEEEcCCCCc--cchhhccCCCCCCCCCcEEEEEeccc-hhhhhcCcccceE
Q 000518 220 --CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMHCQNNY 290 (1448)
Q Consensus 220 --~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~~~~~~~~~ 290 (1448)
...-..+.++.+.+.+. .+++-++|+|+++.. ...+.+...+-....++.+|++|.+. .+..........+
T Consensus 79 p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i 158 (290)
T PRK07276 79 PQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIF 158 (290)
T ss_pred CCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceee
Confidence 00012234444444433 257779999999876 45666666665445556666666544 4444222334466
Q ss_pred EeecCChHHHHHHHH
Q 000518 291 CVSVLNKEEAWSLFS 305 (1448)
Q Consensus 291 ~l~~L~~~e~~~Lf~ 305 (1448)
.+.+ +.++..+.+.
T Consensus 159 ~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 159 HFPK-NEAYLIQLLE 172 (290)
T ss_pred eCCC-cHHHHHHHHH
Confidence 7765 6666556554
No 483
>PRK14530 adenylate kinase; Provisional
Probab=90.84 E-value=0.19 Score=54.84 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=22.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
+.|.|+|++|+||||+|+.++....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999988764
No 484
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=90.83 E-value=0.89 Score=54.62 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=57.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCc-CHHHHHHHHHHHhCCC--------------CCCCChH
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLN--------------FCEESDS 225 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~--------------~~~~~~~ 225 (1448)
..++|.|..|+|||||+.++...... .+=+.++++-+.+.. .+.++..++...-... ..+++..
T Consensus 162 QR~gIfgg~GvGKs~L~~~~~~~~~~-~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~ 240 (494)
T CHL00060 162 GKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPG 240 (494)
T ss_pred CEEeeecCCCCChhHHHHHHHHHHHH-hcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHH
Confidence 46899999999999999999987431 112778888887654 4677777666521110 0111111
Q ss_pred ------HHHHHHHHHHHc-cC-cEEEEEcCCCCc
Q 000518 226 ------ERIMMLCNRLKR-EK-KILVILDDIWTS 251 (1448)
Q Consensus 226 ------~~~~~l~~~l~~-~k-~~LlVlDdv~~~ 251 (1448)
-..-.+-++++. ++ ++||++||+...
T Consensus 241 ~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 241 ARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 112234556653 44 999999998654
No 485
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=90.82 E-value=1.1 Score=48.50 Aligned_cols=52 Identities=29% Similarity=0.277 Sum_probs=39.4
Q ss_pred cCCCccccccHHHHHHHHHHHHc----C---------CCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 134 YNEGHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 134 ~~~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
|......+.|-+..+++|.+... . ...+=|.++|.+|.|||-||++|+|.-.
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS 244 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS 244 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc
Confidence 33445667788888888887654 1 2345688999999999999999999765
No 486
>PRK14531 adenylate kinase; Provisional
Probab=90.80 E-value=0.75 Score=48.67 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=22.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
..|.|+|++|+||||+|+.++....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999998764
No 487
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=90.77 E-value=0.61 Score=55.49 Aligned_cols=88 Identities=24% Similarity=0.413 Sum_probs=51.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC-cCHHHHHHHHHHHhCCC-------CCCCChHHH----
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-PDLKRIRREIADQLGLN-------FCEESDSER---- 227 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 227 (1448)
-..++|+|..|+|||||++.+..... .+..+...+.+. ..+.++.......-... ..+++....
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 35799999999999999998886543 244444555544 34555555544331111 111211111
Q ss_pred --HHHHHHHHH-ccCcEEEEEcCCCCc
Q 000518 228 --IMMLCNRLK-REKKILVILDDIWTS 251 (1448)
Q Consensus 228 --~~~l~~~l~-~~k~~LlVlDdv~~~ 251 (1448)
.-.+-+++. +++++||++||+...
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsltr~ 239 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSLTRF 239 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChHHH
Confidence 122334443 479999999998654
No 488
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=90.77 E-value=0.2 Score=51.35 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=21.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHh
Q 000518 163 IGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 163 i~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
|.|+|++|+||||+|+.++....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998764
No 489
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=90.75 E-value=1.2 Score=53.67 Aligned_cols=91 Identities=20% Similarity=0.310 Sum_probs=56.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccCCcc--eEEEEEecCC-cCHHHHHHHHHHHhCCC-------CCCCChHH----
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFD--EVVFAEVSQT-PDLKRIRREIADQLGLN-------FCEESDSE---- 226 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~--~~~wv~v~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 226 (1448)
.-++|.|..|+|||||+..+++.......+. .++++-+.+. ..+.++..++...-... ..+++...
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 4689999999999999999998765321111 4566666554 35667776665432211 11111111
Q ss_pred --HHHHHHHHHH--ccCcEEEEEcCCCCc
Q 000518 227 --RIMMLCNRLK--REKKILVILDDIWTS 251 (1448)
Q Consensus 227 --~~~~l~~~l~--~~k~~LlVlDdv~~~ 251 (1448)
..-.+-++++ +++++||++||+...
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 1223456666 589999999998654
No 490
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=90.74 E-value=0.3 Score=52.47 Aligned_cols=117 Identities=16% Similarity=0.091 Sum_probs=57.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCC----hHHHHHHHHHH
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEES----DSERIMMLCNR 234 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~----~~~~~~~l~~~ 234 (1448)
..+++.|.|+.|.||||+.+.++.-.--. ..-.+|... ...-.+.+.|...++....... -.....++...
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la---~~G~~vpa~--~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~i 102 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMA---QIGCFVPAE--YATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYI 102 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHH---HcCCCcchh--hcCccChhheeEecCCccccchhhhHHHHHHHHHHHH
Confidence 34789999999999999999987543210 000111110 0001122222222222111000 01111122222
Q ss_pred HH-ccCcEEEEEcCCCCc---cch----hhccCCCCCCCCCcEEEEEeccchhhhh
Q 000518 235 LK-REKKILVILDDIWTS---LDL----ERTGIPFGDVHRGCKILVTSRRRDVLVS 282 (1448)
Q Consensus 235 l~-~~k~~LlVlDdv~~~---~~~----~~l~~~l~~~~~gs~ilvTTR~~~v~~~ 282 (1448)
+. ..++-|+++|+...- .+. ..+...+. ..|+.+|++|.+..++..
T Consensus 103 l~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 103 LDYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHH
Confidence 21 147889999997432 111 11222222 237889999999988874
No 491
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=90.74 E-value=0.37 Score=52.14 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=27.7
Q ss_pred HHcCCCeEEEEEEcCCCchHHHHHHHHHHHHh
Q 000518 154 ALRGPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1448)
Q Consensus 154 ~L~~~~~~vi~I~G~gG~GKTtLa~~~~~~~~ 185 (1448)
.+.+.++++|+++|+.|+|||||..++.....
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34467899999999999999999999998754
No 492
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=90.72 E-value=0.18 Score=54.71 Aligned_cols=109 Identities=18% Similarity=0.188 Sum_probs=58.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHH-hcc-C-----------CcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChH
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLA-KEG-R-----------IFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDS 225 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~-~~~-~-----------~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~ 225 (1448)
..+++.|.|+.|.||||+.+.++... ... . .|+. ++..+....++.+-. ..-.
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~-i~~~~~~~d~~~~~~-------------StF~ 95 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDS-VLTRMGASDSIQHGM-------------STFM 95 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccce-EEEEecCcccccccc-------------chHH
Confidence 34688999999999999999998732 211 1 1111 112222222211100 0111
Q ss_pred HHHHHHHHHHHc-cCcEEEEEcCCCCcc---c----hhhccCCCCCCCCCcEEEEEeccchhhhh
Q 000518 226 ERIMMLCNRLKR-EKKILVILDDIWTSL---D----LERTGIPFGDVHRGCKILVTSRRRDVLVS 282 (1448)
Q Consensus 226 ~~~~~l~~~l~~-~k~~LlVlDdv~~~~---~----~~~l~~~l~~~~~gs~ilvTTR~~~v~~~ 282 (1448)
..+.++..-+.. .++-|+++|+..... + -..+...+.. ..++.+|++|.+..++..
T Consensus 96 ~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~-~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 96 VELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLE-EKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh-ccCCeEEEEcccHHHHHH
Confidence 222333333332 579999999974321 1 1112222221 257899999999988764
No 493
>COG4240 Predicted kinase [General function prediction only]
Probab=90.70 E-value=1.6 Score=45.77 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=51.0
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCCcCHHHHHHHHHHHhCC-----CCCCCChHHHHHHHH
Q 000518 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGL-----NFCEESDSERIMMLC 232 (1448)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~l~ 232 (1448)
.+.-+++|.|+-|+||||++..+++....+.- ..++-.++.+-+-...-+-.++++... ..+..-+......+.
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 45669999999999999999999999875543 466666665544444444445555321 112222344555566
Q ss_pred HHHHccC
Q 000518 233 NRLKREK 239 (1448)
Q Consensus 233 ~~l~~~k 239 (1448)
+.+.+++
T Consensus 127 nai~~g~ 133 (300)
T COG4240 127 NAIARGG 133 (300)
T ss_pred HHHhcCC
Confidence 6666555
No 494
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=90.66 E-value=0.39 Score=54.73 Aligned_cols=53 Identities=25% Similarity=0.241 Sum_probs=36.4
Q ss_pred ccccccHHHHHH---HHHHHHcCCC--eEEEEEEcCCCchHHHHHHHHHHHHhccCCc
Q 000518 138 HEFIESRESILN---DILDALRGPY--VYMIGVYGMAGIGKTTLVKEVARLAKEGRIF 190 (1448)
Q Consensus 138 ~~~~~gR~~~~~---~l~~~L~~~~--~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f 190 (1448)
..++||+.+..+ -+++++...+ -+.|.+.|++|+|||+||..++......-.|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 457888765544 3556666543 4789999999999999999999998754444
No 495
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=90.64 E-value=0.21 Score=55.03 Aligned_cols=33 Identities=30% Similarity=0.451 Sum_probs=22.5
Q ss_pred EEcCCCchHHHHHHHHHHHHhccCCcceEEEEEec
Q 000518 165 VYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS 199 (1448)
Q Consensus 165 I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~ 199 (1448)
|+||+|+||||+++.+.+.....+ ..++-|+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~--~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG--RDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc--CCceEEEcc
Confidence 689999999999999999886432 234444543
No 496
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=90.64 E-value=0.17 Score=53.43 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHH
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLA 184 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~ 184 (1448)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999854
No 497
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=90.63 E-value=0.7 Score=55.01 Aligned_cols=89 Identities=13% Similarity=0.260 Sum_probs=52.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHHhccCCcceEEEEEecCC-cCHHHHHHHHHHHhCCC-------CCCCChHHH---
Q 000518 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-PDLKRIRREIADQLGLN-------FCEESDSER--- 227 (1448)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 227 (1448)
+-..++|+|..|+|||||++.+++... .+..+++.+.+. ..+.+.+.+....-... ..++.....
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 345799999999999999998886543 455666666554 34545555543211000 111111111
Q ss_pred ---HHHHHHHHH-ccCcEEEEEcCCCCc
Q 000518 228 ---IMMLCNRLK-REKKILVILDDIWTS 251 (1448)
Q Consensus 228 ---~~~l~~~l~-~~k~~LlVlDdv~~~ 251 (1448)
.-.+-+++. +++++||++||+...
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCHHHH
Confidence 122334443 479999999999654
No 498
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=90.62 E-value=1 Score=49.63 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhc
Q 000518 162 MIGVYGMAGIGKTTLVKEVARLAKE 186 (1448)
Q Consensus 162 vi~I~G~gG~GKTtLa~~~~~~~~~ 186 (1448)
+|+|.|..|+||||+|+.+....+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999988763
No 499
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=90.59 E-value=0.57 Score=51.44 Aligned_cols=27 Identities=33% Similarity=0.361 Sum_probs=24.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHHhc
Q 000518 160 VYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1448)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~~~~~~~~ 186 (1448)
...++|||+.|.|||-+|+.|+....+
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~ 192 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGV 192 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCC
Confidence 468999999999999999999988763
No 500
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=90.56 E-value=1.2 Score=45.92 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=59.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHHhccC-----------CcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHH
Q 000518 161 YMIGVYGMAGIGKTTLVKEVARLAKEGR-----------IFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIM 229 (1448)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~~~~~~~~~~-----------~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 229 (1448)
+++.|+|+.|.|||++.+.+.--.-... .+..-.|. +. + +....+.. .......
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~--~--------i~~~~~lS----~G~~~~~ 86 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVS-AE--L--------IFTRLQLS----GGEKELS 86 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeE-EE--E--------ehheeecc----ccHHHHH
Confidence 6899999999999999999764332111 11111111 00 0 11111110 0112222
Q ss_pred HHHHHHHc---cCcEEEEEcCCCCccch---hhccCCCCC-CCCCcEEEEEeccchhhhhcCcccceEEeec
Q 000518 230 MLCNRLKR---EKKILVILDDIWTSLDL---ERTGIPFGD-VHRGCKILVTSRRRDVLVSEMHCQNNYCVSV 294 (1448)
Q Consensus 230 ~l~~~l~~---~k~~LlVlDdv~~~~~~---~~l~~~l~~-~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~ 294 (1448)
.+.+.+.. +++-++++|+.....+. ..+...+.. ...|+.+|++|.+...... .++.+.+..
T Consensus 87 ~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~---~d~~~~l~~ 155 (162)
T cd03227 87 ALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAEL---ADKLIHIKK 155 (162)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh---hhhEEEEEE
Confidence 33334432 26789999998655221 222222211 1127789999998887763 344555543
Done!