Query 000518
Match_columns 1448
No_of_seqs 553 out of 6588
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 17:07:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000518.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_291-294//hhsearch_pdb/000518hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 401.1 21.8 306 142-470 131-471 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 368.4 27.7 312 133-469 118-451 (1249)
3 3rgz_A Protein brassinosteroid 1.0 1 1 348.0 31.7 659 488-1333 50-765 (768)
4 1vt4_I APAF-1 related killer D 1.0 1 1 333.2 22.7 283 141-464 130-437 (1221)
5 3rgz_A Protein brassinosteroid 1.0 1 1 328.9 33.8 175 488-676 77-260 (768)
6 1ziw_A TOLL-like receptor 3; i 1.0 1 1 306.1 40.7 176 491-680 7-188 (680)
7 1z6t_A APAF-1, apoptotic prote 1.0 1 1 305.5 28.4 307 135-468 120-450 (591)
8 1ziw_A TOLL-like receptor 3; i 1.0 1 1 291.4 39.4 174 486-672 23-204 (680)
9 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 289.1 35.5 179 490-680 13-198 (606)
10 3t6q_A CD180 antigen; protein- 1.0 1 1 285.9 34.7 177 490-680 14-196 (606)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=401.14 Aligned_cols=306 Identities=16% Similarity=0.156 Sum_probs=242.2
Q ss_pred CCHHHHHHHHHHHHCC---CCEEEEEEECCCCCHHHHHHHHHHH--HHHCCCCCCEEEEEEECCCC--CHHHHHHHHHHH
Q ss_conf 1179999999999729---9938999991797629999999999--98606785508999945895--989999999998
Q 000518 142 ESRESILNDILDALRG---PYVYMIGVYGMAGIGKTTLVKEVAR--LAKEGRIFDEVVFAEVSQTP--DLKRIRREIADQ 214 (1448)
Q Consensus 142 ~gR~~~~~~l~~~L~~---~~~~vi~I~G~gG~GKTtLa~~~~~--~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~ 214 (1448)
+||+.++++|.++|.. ...++|+|+||||+||||||+++|+ +.+++.+|++++||++++.+ +...+++.|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 78417999999987251578962899986999988999999998406987466995799997898787999999999999
Q ss_pred HCCCCC--------CCCHHHHHHHHHHHHHCCC-CEEEEECCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCHHHHHCCC
Q ss_conf 289977--------9992999999999997049-3999994888800010006888899998199999164102300176
Q 000518 215 LGLNFC--------EESDSERIMMLCNRLKREK-KILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSEMH 285 (1448)
Q Consensus 215 l~~~~~--------~~~~~~~~~~l~~~l~~~~-~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~~~ 285 (1448)
++.... ..........+.+.+. ++ |+||||||||+..++ .+ + ..+||+||||||+..++.. ++
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~~kr~LlVLDdv~~~~~~-~~----~-~~~gs~ilvTTR~~~v~~~-~~ 282 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALI-DRPNTLFVFDDVVQEETI-RW----A-QELRLRCLVTTRDVEISNA-AS 282 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHT-TSTTEEEEEEEECCHHHH-HH----H-HHTTCEEEEEESBGGGGGG-CC
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCHHH-CC----C-CCCCCEEEEECCCHHHHHH-CC
T ss_conf 853755345555331469999999999976-898489999799971441-54----3-2699889997497799997-08
Q ss_pred -CCCEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf -4621994148968899999999389999940899999999993899089999999960999589999999986301577
Q 000518 286 -CQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELRFSARNF 364 (1448)
Q Consensus 286 -~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~ 364 (1448)
...+++|++|+.++||+||.++++.....++.++++++|+++|+|+||||+++|+.++.+. |+.+ +.+....+..
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~~l~~~ 358 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNNKLESR 358 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHHHHHHH
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCH---HHHH-HHHHHHHHCC
T ss_conf 89738989998989999999987448998556899999999995998399999999844344---8999-8757876136
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHH-----------HHCCCCCCCCCCHHHHHHHHHCC--CCCCCH---HHHHHHH
Q ss_conf 6257888748999871468871478887-----------72137888982088899977315--643221---2199999
Q 000518 365 TGLEALLGSTIELIYNYLEGEELKLTFL-----------LCSLMKHPCDAPIMDLLKYGTGL--GLFEDI---YTMQERR 428 (1448)
Q Consensus 365 ~~~~~~~~~~l~~sy~~L~~~~lk~cfl-----------~~a~fp~~~~~~i~~li~~w~~~--g~~~~~---~~~~~~~ 428 (1448)
....+. .++.+||+.||.+ +|.||+ |||+||+++.++ ++.|+|+ ||+... .+.++++
T Consensus 359 -~~~~i~-~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~ 431 (549)
T 2a5y_B 359 -GLVGVE-CITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA 431 (549)
T ss_dssp -CSSTTC-CCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH
T ss_pred -CHHHHH-HHHHCCCCCCCHH-HHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCCCCHHHHH
T ss_conf -477789-8975162022679-99997526522336743235608997666----5331101355002677899999999
Q ss_pred HHHHHHHHHHHCCCCCCCCC--CCCCEEHHHHHHHHHHHHHCCC
Q ss_conf 99999999672033113479--8882660057999999750011
Q 000518 429 DRVYALVRGLKDTCLLHDDD--TADWFSMLGFVRNVAISIASIN 470 (1448)
Q Consensus 429 ~~~~~~l~~L~~~~ll~~~~--~~~~~~mHdlir~~a~~~~~~~ 470 (1448)
+ ++++|+++||++... ....|+|||+||+||++++.+.
T Consensus 432 ~----~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 432 D----RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp H----HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred H----HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 9----999998758836714798049996769999999998898
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=368.44 Aligned_cols=312 Identities=20% Similarity=0.244 Sum_probs=242.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHC--CCCEEEEEEECCCCCHHHHHHHHHHHHHHC-CC-CCCEEEEEEECCCCC--HHH
Q ss_conf 567775332117999999999972--999389999917976299999999999860-67-855089999458959--899
Q 000518 133 SYNEGHEFIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKE-GR-IFDEVVFAEVSQTPD--LKR 206 (1448)
Q Consensus 133 ~~~~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~-~~-~f~~~~wv~vs~~~~--~~~ 206 (1448)
..+.....|+||++++++|.++|. ++..++|+|+||||+||||||+++|++.+. .. .++.++|+++++..+ ...
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCCCCCCEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHH
T ss_conf 97999864125799999999998613588777999918988888999998607567886278817999978857267999
Q ss_pred HHHHHHHHHCCCCC-----CCCHHHHHHHHHHHHHCCC--CEEEEECCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCHH
Q ss_conf 99999998289977-----9992999999999997049--3999994888800010006888899998199999164102
Q 000518 207 IRREIADQLGLNFC-----EESDSERIMMLCNRLKREK--KILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDV 279 (1448)
Q Consensus 207 ~~~~i~~~l~~~~~-----~~~~~~~~~~l~~~l~~~~--~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v 279 (1448)
.+..++..+..... ..........+...+. ++ |+||||||||+..+|..+ ++|++||||||++.+
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLML-RKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTS-SSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTT
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH-CCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCHHH
T ss_conf 99999998655303334788777899999999973-5678789999567997788763-------689789999277899
Q ss_pred HHHCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 300176462199414-8968899999999389999940899999999993899089999999960999589999999986
Q 000518 280 LVSEMHCQNNYCVSV-LNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELR 358 (1448)
Q Consensus 280 ~~~~~~~~~~~~l~~-L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~l~~l~ 358 (1448)
+...++....+.+++ |+++++++||...++... +...+.+++|+++|+|+||||+++|++|+.+. ..|+++++.+.
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~--~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~ 346 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK--EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQ 346 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS--TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHH
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCH--HHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH-HHHHHHHHHHH
T ss_conf 8763488437982588887889999998657981--34838899999984997799999999862480-57999999986
Q ss_pred HHCCCC------CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 301577------62578887489998714688714788877213788898208889997731564322121999999999
Q 000518 359 FSARNF------TGLEALLGSTIELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVY 432 (1448)
Q Consensus 359 ~~~~~~------~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~a~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~ 432 (1448)
...+.. .....+. .++.+||+.|+++ .|.||+|||+||+++.++...++.+|.+++ ....
T Consensus 347 ~~~~~~~~~~~~~~~~~~~-~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~ 412 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALD-EAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVE 412 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHH-HHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHH
T ss_pred HHHHHHCCCCCCCCHHHHH-HHHHHHHHHCCHH-HHHHHHHHCCCCCCCEECHHHHHHHHCCCH------------HHHH
T ss_conf 5044303465564467799-9999899867999-999999728137997518999998858988------------8999
Q ss_pred HHHHHHHCCCCCCCCCCC--CCEEHHHHHHHHHHHHHCC
Q ss_conf 999967203311347988--8266005799999975001
Q 000518 433 ALVRGLKDTCLLHDDDTA--DWFSMLGFVRNVAISIASI 469 (1448)
Q Consensus 433 ~~l~~L~~~~ll~~~~~~--~~~~mHdlir~~a~~~~~~ 469 (1448)
.++++|++++|++..... ..|+|||+||++++..+.+
T Consensus 413 ~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 413 DILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred HHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 999999744633896379811899668999998745067
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=348.02 Aligned_cols=659 Identities=15% Similarity=0.043 Sum_probs=326.1
Q ss_pred CCCEEEECCCCCCCC----CCCCC-CCCCCCEEECCCCCCCCCCCCHHHCCCCCCEEEEECCCCCC-CCCC--CCCCCCC
Q ss_conf 461189835679899----99977-89875489847999997789022439998119996387674-3593--3799988
Q 000518 488 KNCIAIFLHDINTGE----LPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLL-TLPS--SFCHLPN 559 (1448)
Q Consensus 488 ~~~r~lsl~~~~~~~----l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~-~lp~--~i~~L~~ 559 (1448)
.+++.+.+.+..+.. ++..+ .+++|+.+++..+.. ..+|.. |..+++|++|+|++|.+. .+|. .++.+.+
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~-~~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 127 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI-NGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCE-EECCCC-CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred CCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC-CCCCHH-HCCCCCCCEEECCCCCCCCCCCCHHHHHCCCC
T ss_conf 9278987789986775576696573168022467868886-787033-24578899898989857870789678727889
Q ss_pred CCEEECCCCCCCCC--C-CCCCCCCCCEEECCCCCCCCCC-HH---HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 87886548777898--5-6578877878882168884345-43---3166756799355898998649000289999979
Q 000518 560 LESLCLDQCILGDI--A-IIGNLKNLEILSLCCSDIEQLP-RE---IGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEE 632 (1448)
Q Consensus 560 Lr~L~L~~~~i~~l--~-~i~~L~~L~~L~Ls~~~i~~LP-~~---i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~ 632 (1448)
|++|+|++|.+... . .++++.+|++|+++++.+...+ .. +.++++|++|++++|. +..... +.++++|++
T Consensus 128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~ 204 (768)
T 3rgz_A 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVD--VSRCVNLEF 204 (768)
T ss_dssp CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCB--CTTCTTCCE
T ss_pred CCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCC-CCCCCC--CCCCCCCCE
T ss_conf 99898968826774797785638899989897983588587155664358988989897880-346578--454786898
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEC
Q ss_conf 99108876432244443357757131189999988992147986778511112355159997452389999866430102
Q 000518 633 LYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKL 712 (1448)
Q Consensus 633 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l 712 (1448)
|++++|.+. . .+..++.+++|+.|++..+.....
T Consensus 205 L~Ls~n~l~-----------~-~~~~l~~l~~L~~L~Ls~n~l~~~---------------------------------- 238 (768)
T 3rgz_A 205 LDVSSNNFS-----------T-GIPFLGDCSALQHLDISGNKLSGD---------------------------------- 238 (768)
T ss_dssp EECCSSCCC-----------S-CCCBCTTCCSCCEEECCSSCCCSC----------------------------------
T ss_pred EECCCCCCC-----------C-CCCCCCCCCCCCEEECCCCCCCCC----------------------------------
T ss_conf 989288278-----------8-771112699999897948858781----------------------------------
Q ss_pred CCCCCCCHHHHHHHHCCCCEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCC
Q ss_conf 48975545899955112232014667880001001286886423411122234504522565421257455547575134
Q 000518 713 KLPTNIYLDEIIMNLKEIEELYLDEVPGIENVLYELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHN 792 (1448)
Q Consensus 713 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~fp~L~~L~l~~ 792 (1448)
.+..+..+++|+.|.+.++..... .+. ..+++|++|++.++.....++... ...+++|+.|.+.+
T Consensus 239 -------~~~~l~~l~~L~~L~Ls~n~l~~~-~~~---~~l~~L~~L~L~~n~l~~~ip~~~----~~~~~~L~~L~Ls~ 303 (768)
T 3rgz_A 239 -------FSRAISTCTELKLLNISSNQFVGP-IPP---LPLKSLQYLSLAENKFTGEIPDFL----SGACDTLTGLDLSG 303 (768)
T ss_dssp -------HHHHTTTCSSCCEEECCSSCCEES-CCC---CCCTTCCEEECCSSEEEESCCCCS----CTTCTTCSEEECCS
T ss_pred -------CCHHHHCCCCCCEEECCCCCCCCC-CCC---CCCCCCCEEECCCCCCCCCCCHHH----HHHCCCCCEEECCC
T ss_conf -------657774488889898988866571-672---436878989791785577258888----84468688998968
Q ss_pred CCCCCCHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 33310122466770013530399996089977679701114789865896545745034531488887688775542345
Q 000518 793 LIHLEKICDGLLTAEFFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFG 872 (1448)
Q Consensus 793 ~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~ 872 (1448)
+.--..+ +...+.+++|+.|.+.+|.-...++. ..+..+++|+.|++.+|.....++. ....++
T Consensus 304 n~l~~~~---p~~~~~l~~L~~L~L~~n~l~~~ip~-~~l~~l~~L~~L~Ls~n~l~~~~p~------------~l~~l~ 367 (768)
T 3rgz_A 304 NHFYGAV---PPFFGSCSLLESLALSSNNFSGELPM-DTLLKMRGLKVLDLSFNEFSGELPE------------SLTNLS 367 (768)
T ss_dssp SEEEECC---CGGGGGCTTCCEEECCSSEEEEECCH-HHHTTCTTCCEEECCSSEEEECCCT------------THHHHT
T ss_pred CCCCCCC---CHHHHCCCCCCEEECCCCCCCCCCCH-HHHHCCCCCCEEECCCCCCCCCCCH------------HHHHHH
T ss_conf 9677842---36775587766778978852573797-8872488887884847843762309------------898632
Q ss_pred -CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf -4327871678773221236678777899978865433356554100233464322479998887665565399981467
Q 000518 873 -QLRSLILKFLPQLTSFYAQLKSSDELDTPKPLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSE 951 (1448)
Q Consensus 873 -~L~~L~L~~cp~L~~~~~~~~~~~~~~~~~~~~~~~~~~p~Le~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~C~ 951 (1448)
+|+.|.+.++.--..+... .....+++|+.|++.++.+....+..+ ..+++|+.|++++|
T Consensus 368 ~~L~~L~Ls~N~l~~~~~~~--------------~~~~~~~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~Ls~N- 428 (768)
T 3rgz_A 368 ASLLTLDLSSNNFSGPILPN--------------LCQNPKNTLQELYLQNNGFTGKIPPTL----SNCSELVSLHLSFN- 428 (768)
T ss_dssp TTCSEEECCSSEEEEECCTT--------------TTCSTTCCCCEEECCSSEEEEECCGGG----GGCTTCCEEECCSS-
T ss_pred CCCCEEECCCCCCCCCCCHH--------------HHHCCCCCCCEEECCCCCCCCCCCHHH----HCCCCCCEEECCCC-
T ss_conf 27719986278747876766--------------653324776189897784654248777----56898798989588-
Q ss_pred CCCCCCCCHHHHHCCCCCEEEEECCCCCCEEECCCCCCCCCCEEECCCCCEECCCCCCCCCEECCCCCCCCCCCCCEEEE
Q ss_conf 73333661266410346558993035631333033565554300047645001257875330038853335887546786
Q 000518 952 KIKYLFPSSIVRNFVQLQHLEICHCTVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEV 1031 (1448)
Q Consensus 952 ~L~~l~~~~~~~~l~~L~~L~I~~C~~L~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i 1031 (1448)
.++...| ..+..+++|+.|++++|. -...++.... .+++|+.|++
T Consensus 429 ~l~~~~p-~~l~~l~~L~~L~L~~n~--------------------------------l~~~~p~~~~--~l~~L~~L~L 473 (768)
T 3rgz_A 429 YLSGTIP-SSLGSLSKLRDLKLWLNM--------------------------------LEGEIPQELM--YVKTLETLIL 473 (768)
T ss_dssp EEESCCC-GGGGGCTTCCEEECCSSC--------------------------------CCSCCCGGGG--GCTTCCEEEC
T ss_pred CCCCCCC-HHHHCCCCCCEEECCCCC--------------------------------CCCCCCHHHC--CCCCCEEEEE
T ss_conf 4668546-777449988989897881--------------------------------5471897882--8777329990
Q ss_pred CCCCCEEEECCCCCCCCCCCHHCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 16873012124555688740000136653320144555136630155137664211235788655545528998417998
Q 000518 1032 YGCNKVKIFTSEFLSFPKNSEEIQRNIPTQQALFLVEKVGSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSD 1111 (1448)
Q Consensus 1032 ~~C~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~is~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~~ 1111 (1448)
.+|.-...++.. ...+++|+.|++++|.+....+..+. .+++|+.|++++|.+.
T Consensus 474 ~~N~l~~~~p~~------------------------l~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 474 DFNDLTGEIPSG------------------------LSNCTNLNWISLSNNRLTGEIPKWIG--RLENLAILKLSNNSFS 527 (768)
T ss_dssp CSSCCCSCCCGG------------------------GGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCE
T ss_pred CCCCCCCCCCHH------------------------HHCCCCCCEEECCCCCCCCCCCHHHH--CCCCCCEEECCCCCCC
T ss_conf 199513758878------------------------81699899897539951896876885--6899998989789433
Q ss_pred CCCHHHHHHCCCCCEEEEEECCEE-EEECCHHH----------------------------------------HHHCCCC
Q ss_conf 640778721387528999902016-86022135----------------------------------------4410543
Q 000518 1112 NFPICFLQYFKNLEKLELRWSSYK-QIFSYKEA----------------------------------------EKHAGKL 1150 (1448)
Q Consensus 1112 ~~~~~~l~~l~~L~~L~i~c~~l~-~i~~~~~~----------------------------------------~~~~~~l 1150 (1448)
......+..+++|+.|+++.+.+. .++..-.. ......+
T Consensus 528 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 607 (768)
T 3rgz_A 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred CCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC
T ss_conf 74887770889899898988846882795786042122320134542111134443222233222100135563232002
Q ss_pred CCCCEEECCCCCCCCHHHCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCC
Q ss_conf 43017871788787410024876401101333467722688664578886567646898844788864432243401334
Q 000518 1151 THIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVPSSPSFRNLITLEVWYCKGLKNLVTSSTAKSLVQ 1230 (1448)
Q Consensus 1151 ~~L~~L~l~~c~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~l~~L~~L~I~~C~~L~~l~~~~~~~~l~~ 1230 (1448)
+.+..+.+.. ..+.+..+..+..+++|+.|+++++.-...+|..+..+++|+.|+++++ +++...+.. ...+++
T Consensus 608 ~~~~~~~l~~----~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~-l~~L~~ 681 (768)
T 3rgz_A 608 STRNPCNITS----RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIPDE-VGDLRG 681 (768)
T ss_dssp GGTCCSCTTS----CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS-CCCSCCCGG-GGGCTT
T ss_pred CCCCCCCCCC----CEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCC-CCCCCCCHH-HHCCCC
T ss_conf 3211001133----1004627433403356657978588015558778841415787848688-038878967-847778
Q ss_pred CCEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 46788805654210003667656444322332400022133434313996311379855687615776545578887897
Q 000518 1231 LMQLRIDGCKMITEIISNEGDVAEDEIVFSKLKWLSLENLESLTSFYSGNYTFKFPCLEDLFVIECPNMKIFSTRESNTP 1310 (1448)
Q Consensus 1231 L~~L~I~~c~~l~~~~~~~~~~~~~~~~~~sL~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~Cp~l~~~~~~~~~~p 1310 (1448)
|+.|+++++..-..+|.. ...+++|+.|++.+++--..+|.+. ++.++....+.++|.+.-.|.
T Consensus 682 L~~LdLs~N~l~g~ip~~-------l~~l~~L~~L~ls~N~l~g~iP~~~---~~~~~~~~~~~gN~~Lcg~~l------ 745 (768)
T 3rgz_A 682 LNILDLSSNKLDGRIPQA-------MSALTMLTEIDLSNNNLSGPIPEMG---QFETFPPAKFLNNPGLCGYPL------ 745 (768)
T ss_dssp CCEEECCSSCCEECCCGG-------GGGCCCCSEEECCSSEEEEECCSSS---SGGGSCGGGGCSCTEEESTTS------
T ss_pred CCEEECCCCCCCCCCCHH-------HHCCCCCCEEECCCCCCCCCCCCCH---HHCCCCHHHHCCCCHHCCCCC------
T ss_conf 998989788023868867-------7578878978796881556089960---102489777569832108877------
Q ss_pred CCEEEECCCCCCCCCCCCCHHHH
Q ss_conf 63289805787755445991599
Q 000518 1311 KLQEVRQNWGLDKGCWEGGLNAT 1333 (1448)
Q Consensus 1311 ~L~~~~~~~~g~~~~~~~~~~~~ 1333 (1448)
. .|....+++|++++|....
T Consensus 746 --~-~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 746 --P-RCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp --C-CCCSCC-------------
T ss_pred --C-CCCCCCCCCCCCCCCCCCC
T ss_conf --6-7888766888988876566
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=333.17 Aligned_cols=283 Identities=19% Similarity=0.168 Sum_probs=219.2
Q ss_pred CCCHHHHHHHHHHHHCC-CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCE-EEEEEECCCCCHHHHHHHHHHHHCC-
Q ss_conf 21179999999999729-99389999917976299999999999860678550-8999945895989999999998289-
Q 000518 141 IESRESILNDILDALRG-PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDE-VVFAEVSQTPDLKRIRREIADQLGL- 217 (1448)
Q Consensus 141 ~~gR~~~~~~l~~~L~~-~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~f~~-~~wv~vs~~~~~~~~~~~i~~~l~~- 217 (1448)
.+||++++++|.++|.+ +..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..++..++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 78928999999999743589718999769996679999999971498874899389998289999999999999998622
Q ss_pred --CCCC--C---CHH----HHHHHHHHHHH--CCCCEEEEECCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCHHHHHCC
Q ss_conf --9779--9---929----99999999997--049399999488880001000688889999819999916410230017
Q 000518 218 --NFCE--E---SDS----ERIMMLCNRLK--REKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSEM 284 (1448)
Q Consensus 218 --~~~~--~---~~~----~~~~~l~~~l~--~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~~ 284 (1448)
.... . ... .....+...+. .++|+||||||||+.+.|+.+. +||+||||||++.++.. +
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~-l 281 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDF-L 281 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHH-H
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHC-------CCEEEEEECCCHHHHHH-C
T ss_conf 721022001346799999999999999998504788799871868189998647-------98299994437379986-6
Q ss_pred CCCCEEEEE------CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCC--CHHHHHHHHHH
Q ss_conf 646219941------4896889999999938999994089999999999389908999999996099--95899999999
Q 000518 285 HCQNNYCVS------VLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNK--PLFVWKKALQE 356 (1448)
Q Consensus 285 ~~~~~~~l~------~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~--~~~~w~~~l~~ 356 (1448)
.....++++ +|+.+|||+||.++.+.. . .++..+| |+|+||||+++|+.|+.+ ....|+..
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~--~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~--- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV--- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC--T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC---
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC--H---HHHHHHH---HCCCHHHHHHHHHHHHCCCCCHHHHHCC---
T ss_conf 897089946865568969999999999974998--8---9999999---6989999999999984889979998669---
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCCCCCH-HHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8630157762578887489998714688714-788877213788898208889997731564322121999999999999
Q 000518 357 LRFSARNFTGLEALLGSTIELIYNYLEGEEL-KLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVYALV 435 (1448)
Q Consensus 357 l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~l-k~cfl~~a~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~~~l 435 (1448)
....+. .++.+||+.|+++ . |.||+|||+||+++.++.+.++.+|+++|. + ....++
T Consensus 351 ---------~~~~I~-aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------e----dAe~~L 408 (1221)
T 1vt4_I 351 ---------NCDKLT-TIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------S----DVMVVV 408 (1221)
T ss_dssp ---------SCHHHH-HHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------H----HHHHHH
T ss_pred ---------CHHHHH-HHHHHHHHHCCHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCH-------H----HHHHHH
T ss_conf ---------861899-9999999848899-99999999717799998779999987667788-------9----999999
Q ss_pred HHHHCCCCCCCCCCCCCEEHHHHHHHHHH
Q ss_conf 96720331134798882660057999999
Q 000518 436 RGLKDTCLLHDDDTADWFSMLGFVRNVAI 464 (1448)
Q Consensus 436 ~~L~~~~ll~~~~~~~~~~mHdlir~~a~ 464 (1448)
++|+++||++..+..+.|+|||++++++.
T Consensus 409 ~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 409 NKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHHHHHCCEEEECCCCEEEEHHHHHHHHC
T ss_conf 99996198898689998986099999856
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=328.95 Aligned_cols=175 Identities=19% Similarity=0.169 Sum_probs=95.6
Q ss_pred CCCEEEECCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCC-HHHCCCCCCEEEEECCCCCC-CCCCCC-CCCCCCCEE
Q ss_conf 46118983567989999977-898754898479999977890-22439998119996387674-359337-999888788
Q 000518 488 KNCIAIFLHDINTGELPEGL-EYPHLTSLCMNPKDPFLHIPD-NFFAGMPKLRVLVLTRMKLL-TLPSSF-CHLPNLESL 563 (1448)
Q Consensus 488 ~~~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~-~~f~~l~~Lr~L~Ls~~~i~-~lp~~i-~~L~~Lr~L 563 (1448)
+.++.+.+..+.+..+|..+ .+++|++|++++|.....+|. ..|..+++|++|++++|.+. ..|..+ .++.+|++|
T Consensus 77 ~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156 (768)
T ss_dssp TTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred CCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEE
T ss_conf 80224678688867870332457889989898985787078967872788999898968826774797785638899989
Q ss_pred ECCCCCCCCC--CC---CCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 6548777898--56---578877878882168884345433166756799355898998649000289999979991088
Q 000518 564 CLDQCILGDI--AI---IGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNT 638 (1448)
Q Consensus 564 ~L~~~~i~~l--~~---i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 638 (1448)
+|++|.+... .. ++++.+|++|+++++.+.... .+..+++|++|++++|.....+|. ++++++|++|++++|
T Consensus 157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGN 233 (768)
T ss_dssp ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC-BCTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSS
T ss_pred ECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCEEECCCC
T ss_conf 89798358858715566435898898989788034657-845478689898928827887711--126999998979488
Q ss_pred CCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCC
Q ss_conf 76432244443357757131189999988992147986
Q 000518 639 SVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAV 676 (1448)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 676 (1448)
.+. ...+..+..+++|+.|++..+...
T Consensus 234 ~l~-----------~~~~~~l~~l~~L~~L~Ls~n~l~ 260 (768)
T 3rgz_A 234 KLS-----------GDFSRAISTCTELKLLNISSNQFV 260 (768)
T ss_dssp CCC-----------SCHHHHTTTCSSCCEEECCSSCCE
T ss_pred CCC-----------CCCCHHHHCCCCCCEEECCCCCCC
T ss_conf 587-----------816577744888898989888665
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=306.08 Aligned_cols=176 Identities=22% Similarity=0.257 Sum_probs=137.9
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCEEECCCCC
Q ss_conf 189835679899999778987548984799999778902243999811999638767435-9337999888788654877
Q 000518 491 IAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTL-PSSFCHLPNLESLCLDQCI 569 (1448)
Q Consensus 491 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~ 569 (1448)
..+...+..+..+|..+ .++++.|++++|.. ..++...|.++++|++|+++++.+..+ |..++.+.+|++|+|++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQL-RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCC-CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CEEECCCCCCCCCCCCC-CCCCCEEECCCCCC-CCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 74487779805264124-88876888989977-87597887178767588788996485697787406676888899985
Q ss_pred CCCC--CCCCCCCCCCEEECCCCCCCCCC-HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 7898--56578877878882168884345-43316675679935589899864900028999997999108876432244
Q 000518 570 LGDI--AIIGNLKNLEILSLCCSDIEQLP-REIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEG 646 (1448)
Q Consensus 570 i~~l--~~i~~L~~L~~L~Ls~~~i~~LP-~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~ 646 (1448)
+..+ ..|+++.+|++|+++++.+..+| ..++++++|++|++++|. +...+...++++++|++|++++|.+.
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~----- 158 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQ----- 158 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCC-----
T ss_pred CCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCC-CCCCCCHHHCCCCCCCEEECCCCCCC-----
T ss_conf 675685453038888989898996685396674156788889898995-24667211124556777974588436-----
Q ss_pred CCCCCCCCCHHHC--CCCCCCCEEEEECCCCCCCCC
Q ss_conf 4433577571311--899999889921479867785
Q 000518 647 LNLERNNASLQEL--SILSHLTTLEIHIRDAVILPK 680 (1448)
Q Consensus 647 ~~~~~~~~~~~~L--~~L~~L~~L~l~~~~~~~~~~ 680 (1448)
......+ ..+++|+.|++..+.....+.
T Consensus 159 ------~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 159 ------ALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp ------CBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred ------CCCHHHHHCCCCCCCCEEECCCCCCCCCCH
T ss_conf ------529788624466632179888982565581
No 7
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=305.46 Aligned_cols=307 Identities=22% Similarity=0.283 Sum_probs=228.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHC--CCCEEEEEEECCCCCHHHHHHHHHHHHHHC-CCCC-CEEEEEEECCCCCHHHHHHH
Q ss_conf 7775332117999999999972--999389999917976299999999999860-6785-50899994589598999999
Q 000518 135 NEGHEFIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKE-GRIF-DEVVFAEVSQTPDLKRIRRE 210 (1448)
Q Consensus 135 ~~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~-~~~f-~~~~wv~vs~~~~~~~~~~~ 210 (1448)
+.....|+||+.++++|.+++. .+..++|+|+||||+||||||++++++.++ ..+| +.++|++++.. +...+...
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCCEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEECCCC-CHHHHHHH
T ss_conf 99987140529999999999860368884699976998988999999983556888528996599977877-66889999
Q ss_pred ---HHHHHCCC-----CCCCCHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCHHHH
Q ss_conf ---99982899-----7799929999999999970-49399999488880001000688889999819999916410230
Q 000518 211 ---IADQLGLN-----FCEESDSERIMMLCNRLKR-EKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLV 281 (1448)
Q Consensus 211 ---i~~~l~~~-----~~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~ 281 (1448)
++..++.. ............+...+.. .+++|||+||+|+...++.+ ++|++||||||+..++.
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCCHHHH
T ss_conf 99999985035565567998899999999999706799869998589987999876-------37986999898817777
Q ss_pred HCCCCCCEEEE---ECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 01764621994---148968899999999389999940899999999993899089999999960999589999999986
Q 000518 282 SEMHCQNNYCV---SVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELR 358 (1448)
Q Consensus 282 ~~~~~~~~~~l---~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~l~~l~ 358 (1448)
. +. ...+++ ++|+.+|+++||...++.. .....+.+.+|+++|+|+||||.++|++++.+.. .|+.+++.+.
T Consensus 272 ~-~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~-~w~~~l~~l~ 346 (591)
T 1z6t_A 272 S-VM-GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN-RWEYYLKQLQ 346 (591)
T ss_dssp T-CC-SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred H-CC-CCCEEEECCCCCCHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCH-HHHHHHHHHH
T ss_conf 3-48-9826861588999899999999871898--3104599999999958983799999999844843-5999999998
Q ss_pred HHCCC------CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 30157------762578887489998714688714788877213788898208889997731564322121999999999
Q 000518 359 FSARN------FTGLEALLGSTIELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVY 432 (1448)
Q Consensus 359 ~~~~~------~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~a~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~ 432 (1448)
..... ......+. .++..||+.|+++ .|.||++||+||+++.++...+...|.+.+ + ...
T Consensus 347 ~~~~~~~~~~~~~~~~~l~-~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~--------~----~~~ 412 (591)
T 1z6t_A 347 NKQFKRIRKSSSYDYEALD-EAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET--------E----EVE 412 (591)
T ss_dssp SCCCCCSSCCCSSCCHHHH-HHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH--------H----HHH
T ss_pred HHHHHHHHHCCCCCHHHHH-HHHHHHHHHCCHH-HHHHHHHCCCCCCCCCCCHHHHHHHHCCCH--------H----HHH
T ss_conf 8689876511465437899-9999999868999-999999745567998508999999966588--------9----999
Q ss_pred HHHHHHHCCCCCCCCC--CCCCEEHHHHHHHHHHHHHC
Q ss_conf 9999672033113479--88826600579999997500
Q 000518 433 ALVRGLKDTCLLHDDD--TADWFSMLGFVRNVAISIAS 468 (1448)
Q Consensus 433 ~~l~~L~~~~ll~~~~--~~~~~~mHdlir~~a~~~~~ 468 (1448)
.++++|++++|++... ....|+||+++|++++....
T Consensus 413 ~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 413 DILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHCCCEEEECCCCCCEEEECHHHHHHHHHHHH
T ss_conf 99999985958688548985679976899999986535
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=291.42 Aligned_cols=174 Identities=23% Similarity=0.261 Sum_probs=97.8
Q ss_pred CCCCCEEEECCCCCCCCCCCC-C-CCCCCCEEECCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCC-CCCCCCCCCE
Q ss_conf 124611898356798999997-7-898754898479999977890224399981199963876743593-3799988878
Q 000518 486 MLKNCIAIFLHDINTGELPEG-L-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPS-SFCHLPNLES 562 (1448)
Q Consensus 486 ~~~~~r~lsl~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~ 562 (1448)
...+++++.+.++.+..++.. + .+++|++|++++|... .++...|.++++|++|++++|.+..+|. .|+.+.+|++
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCC-CCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCE
T ss_conf 4888768889899778759788717876758878899648-569778740667688889998567568545303888898
Q ss_pred EECCCCCCCCC--CCCCCCCCCCEEECCCCCCCCC-CHHHHCCCCCCEEECCCCCCCCCCCCCCCC--CCCCCCEEEEEC
Q ss_conf 86548777898--5657887787888216888434-543316675679935589899864900028--999997999108
Q 000518 563 LCLDQCILGDI--AIIGNLKNLEILSLCCSDIEQL-PREIGELTQLKLLDLSNCSKLKVIPPNVIS--SLSQLEELYLGN 637 (1448)
Q Consensus 563 L~L~~~~i~~l--~~i~~L~~L~~L~Ls~~~i~~L-P~~i~~L~~L~~L~L~~~~~l~~lp~~~i~--~L~~L~~L~l~~ 637 (1448)
|+|++|.+..+ ..++++.+|++|+++++.+... |..++++++|++|++++|. +..++...+. .+++|++|++++
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTT
T ss_pred EECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCC-CCCCCHHHHHCCCCCCCCEEECCC
T ss_conf 9898996685396674156788889898995246672111245567779745884-365297886244666321798889
Q ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEC
Q ss_conf 87643224444335775713118999998899214
Q 000518 638 TSVEWEFEGLNLERNNASLQELSILSHLTTLEIHI 672 (1448)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~ 672 (1448)
|.+. ...+..+..+.+|+.|.+..
T Consensus 181 n~l~-----------~~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 181 NQIK-----------EFSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp CCCC-----------CBCTTGGGGSSEECEEECTT
T ss_pred CCCC-----------CCCHHHHHHHHHHHHHHCCC
T ss_conf 8256-----------55815553223445543056
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=289.15 Aligned_cols=179 Identities=18% Similarity=0.228 Sum_probs=132.3
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCEEECCCC
Q ss_conf 1189835679899999778987548984799999778902243999811999638767435-933799988878865487
Q 000518 490 CIAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTL-PSSFCHLPNLESLCLDQC 568 (1448)
Q Consensus 490 ~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~ 568 (1448)
.+.+...+..+..+|..+ .++++.|++++|.. ..++...|.++++|++|++++|.+..+ |..|..+.+|++|+|++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDI-PSSTKNIDLSFNPL-KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCCEECCCCCCCCCCCCC-CCCCCEEECCCCCC-CEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCC
T ss_conf 970574688845189888-88767887888975-7737545557766748868877366439777306010688678798
Q ss_pred CCCCC--CCCCCCCCCCEEECCCCCCCCCC-HHHHCCCCCCEEECCCCCCCC--CCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 77898--56578877878882168884345-433166756799355898998--64900028999997999108876432
Q 000518 569 ILGDI--AIIGNLKNLEILSLCCSDIEQLP-REIGELTQLKLLDLSNCSKLK--VIPPNVISSLSQLEELYLGNTSVEWE 643 (1448)
Q Consensus 569 ~i~~l--~~i~~L~~L~~L~Ls~~~i~~LP-~~i~~L~~L~~L~L~~~~~l~--~lp~~~i~~L~~L~~L~l~~~~~~~~ 643 (1448)
.+..+ ..|+++.+|++|+++++.+..+| ..++++++|++|++++|. +. .+|.. ++++++|++|++++|.+...
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred CCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCEECHHH-HHHCCCCCEEECCCCCCEEC
T ss_conf 5630485220786537888703775554451134898877989687885-232530686-73267777887668853105
Q ss_pred CCCCCCCCCCCCHHHCCCCCC-CCEEEEECCCCCCCCC
Q ss_conf 244443357757131189999-9889921479867785
Q 000518 644 FEGLNLERNNASLQELSILSH-LTTLEIHIRDAVILPK 680 (1448)
Q Consensus 644 ~~~~~~~~~~~~~~~L~~L~~-L~~L~l~~~~~~~~~~ 680 (1448)
. ...+..+.+++. +..|++..+....++.
T Consensus 169 ~--------~~~~~~l~~L~~~l~~L~l~~n~l~~~~~ 198 (606)
T 3vq2_A 169 T--------VNDLQFLRENPQVNLSLDMSLNPIDFIQD 198 (606)
T ss_dssp C--------TTTTHHHHHCTTCCCEEECTTCCCCEECT
T ss_pred C--------HHHHHHHHCCCCCCCEEECCCCCCCEECC
T ss_conf 7--------33412120342002430046897532571
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=285.89 Aligned_cols=177 Identities=19% Similarity=0.165 Sum_probs=139.2
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCEEECCCC
Q ss_conf 1189835679899999778987548984799999778902243999811999638767435-933799988878865487
Q 000518 490 CIAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTL-PSSFCHLPNLESLCLDQC 568 (1448)
Q Consensus 490 ~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~ 568 (1448)
.+.+...+..+..+|..+ .++++.|++++|... .++...|.++++|++|++++|.+..+ |..|+.+.+|++|+|++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTL-PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCEEECCCCCCCCCCCCC-CCCCCEEECCCCCCC-CCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCC
T ss_conf 723777779806286778-986758981587347-179667256766528978898355248511368433676448898
Q ss_pred CCCCC--CCCCCCCCCCEEECCCCCCCCC-CHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 77898--5657887787888216888434-54331667567993558989986490002899999799910887643224
Q 000518 569 ILGDI--AIIGNLKNLEILSLCCSDIEQL-PREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFE 645 (1448)
Q Consensus 569 ~i~~l--~~i~~L~~L~~L~Ls~~~i~~L-P~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~ 645 (1448)
.+..+ ..++++.+|++|+++++.+..+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~---- 166 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIH---- 166 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCC----
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCC-CCCCCCCCCCCCCCCCEEECCCCCCC----
T ss_conf 5654586552344215376521267665781012237822389887983-41147654568765687776568445----
Q ss_pred CCCCCCCCCCHHHCCCCCCCC--EEEEECCCCCCCCC
Q ss_conf 444335775713118999998--89921479867785
Q 000518 646 GLNLERNNASLQELSILSHLT--TLEIHIRDAVILPK 680 (1448)
Q Consensus 646 ~~~~~~~~~~~~~L~~L~~L~--~L~l~~~~~~~~~~ 680 (1448)
......++.+.+|+ .|++..+.....+.
T Consensus 167 -------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 167 -------YLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp -------EECHHHHHTTTTCCSEEEECTTCCCCEECT
T ss_pred -------CCCHHHHHHHCCCCEEEEECCCCCCCCCCH
T ss_conf -------549656332215640389667981475486
Done!